Query 003047
Match_columns 854
No_of_seqs 296 out of 876
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 11:22:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 1.7E-33 5.9E-38 312.0 45.8 118 32-205 4-121 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 1E-31 3.5E-36 297.7 43.5 369 151-846 4-374 (388)
3 2xpi_A Anaphase-promoting comp 100.0 1.8E-30 6E-35 303.2 43.3 484 26-846 83-585 (597)
4 2gw1_A Mitochondrial precursor 100.0 5.2E-29 1.8E-33 283.6 42.5 465 24-821 3-492 (514)
5 3fp2_A TPR repeat-containing p 100.0 6.7E-29 2.3E-33 285.2 40.8 465 23-820 21-504 (537)
6 2xpi_A Anaphase-promoting comp 100.0 1.6E-28 5.3E-33 286.8 42.1 464 29-822 119-594 (597)
7 2gw1_A Mitochondrial precursor 100.0 3.7E-27 1.3E-31 268.3 37.9 383 143-846 3-484 (514)
8 3fp2_A TPR repeat-containing p 100.0 2.1E-26 7.3E-31 264.3 38.5 411 142-845 21-496 (537)
9 4g1t_A Interferon-induced prot 100.0 2.6E-27 8.8E-32 268.6 29.5 401 144-814 49-466 (472)
10 3ieg_A DNAJ homolog subfamily 100.0 3.2E-25 1.1E-29 238.9 42.1 316 323-846 5-341 (359)
11 3ieg_A DNAJ homolog subfamily 100.0 1.3E-24 4.5E-29 234.1 42.2 294 328-825 44-353 (359)
12 2y4t_A DNAJ homolog subfamily 100.0 4.2E-25 1.4E-29 248.1 39.9 359 142-811 22-414 (450)
13 2y4t_A DNAJ homolog subfamily 99.9 3.7E-24 1.3E-28 240.3 41.4 315 322-847 27-365 (450)
14 3hym_B Cell division cycle pro 99.9 2.5E-24 8.7E-29 229.9 31.1 288 323-830 24-323 (330)
15 3hym_B Cell division cycle pro 99.9 5.4E-24 1.8E-28 227.4 33.1 283 28-488 23-315 (330)
16 4g1t_A Interferon-induced prot 99.9 2.6E-25 8.9E-30 252.1 23.9 292 29-486 53-380 (472)
17 1fch_A Peroxisomal targeting s 99.9 9E-24 3.1E-28 230.4 25.6 305 330-837 34-355 (368)
18 2xm6_A Protein corresponding t 99.9 3.4E-21 1.2E-25 221.8 45.8 394 45-824 25-452 (490)
19 4eqf_A PEX5-related protein; a 99.9 5.7E-23 2E-27 225.1 24.1 275 357-837 65-352 (365)
20 2xm6_A Protein corresponding t 99.9 7.2E-20 2.5E-24 210.7 49.5 403 27-814 39-474 (490)
21 1fch_A Peroxisomal targeting s 99.9 2.6E-22 9.1E-27 218.7 25.6 294 36-492 34-345 (368)
22 4eqf_A PEX5-related protein; a 99.9 4.5E-22 1.5E-26 218.0 25.6 286 324-807 68-356 (365)
23 3sf4_A G-protein-signaling mod 99.9 1.1E-21 3.8E-26 215.7 27.6 315 26-493 8-363 (406)
24 3cv0_A Peroxisome targeting si 99.9 4.1E-21 1.4E-25 204.7 28.4 285 26-476 20-319 (327)
25 3cv0_A Peroxisome targeting si 99.9 6.4E-21 2.2E-25 203.2 28.7 277 358-837 22-311 (327)
26 4a1s_A PINS, partner of inscut 99.9 5.7E-21 1.9E-25 212.1 26.6 299 24-476 45-376 (411)
27 2h6f_A Protein farnesyltransfe 99.9 7.5E-21 2.6E-25 213.8 27.6 239 322-721 98-346 (382)
28 2h6f_A Protein farnesyltransfe 99.9 4E-21 1.4E-25 216.0 25.2 254 348-822 90-363 (382)
29 3ro2_A PINS homolog, G-protein 99.9 9.4E-21 3.2E-25 201.0 26.5 298 26-476 4-336 (338)
30 3uq3_A Heat shock protein STI1 99.9 5.5E-20 1.9E-24 189.0 29.4 248 25-486 3-256 (258)
31 3u4t_A TPR repeat-containing p 99.9 3.8E-20 1.3E-24 193.2 27.6 149 328-488 115-266 (272)
32 3e4b_A ALGK; tetratricopeptide 99.9 1.3E-20 4.3E-25 216.1 25.4 385 32-837 8-417 (452)
33 3u4t_A TPR repeat-containing p 99.9 6.1E-20 2.1E-24 191.6 26.0 259 357-822 3-265 (272)
34 2pl2_A Hypothetical conserved 99.9 2.5E-20 8.4E-25 191.6 22.3 199 354-721 2-212 (217)
35 3sf4_A G-protein-signaling mod 99.9 4.5E-20 1.5E-24 202.8 25.5 313 323-830 11-365 (406)
36 3mkr_A Coatomer subunit epsilo 99.8 4.5E-19 1.5E-23 191.3 29.9 265 32-481 4-273 (291)
37 3mkr_A Coatomer subunit epsilo 99.8 2.6E-19 8.8E-24 193.3 25.5 282 326-835 4-288 (291)
38 3uq3_A Heat shock protein STI1 99.8 1.5E-18 5.1E-23 178.3 29.9 216 144-488 3-218 (258)
39 2pl2_A Hypothetical conserved 99.8 2.8E-19 9.4E-24 183.8 23.2 200 143-470 2-212 (217)
40 3ro2_A PINS homolog, G-protein 99.8 1.9E-18 6.3E-23 183.2 29.9 294 323-811 7-336 (338)
41 4a1s_A PINS, partner of inscut 99.8 1.8E-18 6.1E-23 191.9 29.2 293 323-811 50-376 (411)
42 2ooe_A Cleavage stimulation fa 99.8 6.2E-17 2.1E-21 188.0 40.2 437 49-847 1-499 (530)
43 2q7f_A YRRB protein; TPR, prot 99.8 1.3E-18 4.5E-23 177.7 23.0 217 145-488 22-238 (243)
44 2ho1_A Type 4 fimbrial biogene 99.8 4.4E-18 1.5E-22 175.7 26.8 215 142-483 32-249 (252)
45 3vtx_A MAMA; tetratricopeptide 99.8 8.1E-19 2.8E-23 173.4 19.8 124 334-477 52-175 (184)
46 3ulq_A Response regulator aspa 99.8 6.5E-18 2.2E-22 187.3 26.7 246 322-722 104-367 (383)
47 1ouv_A Conserved hypothetical 99.8 2.6E-17 8.7E-22 173.3 29.9 237 354-815 3-259 (273)
48 1xnf_A Lipoprotein NLPI; TPR, 99.8 8.5E-18 2.9E-22 175.0 25.1 56 777-835 214-269 (275)
49 3ulq_A Response regulator aspa 99.8 7.3E-17 2.5E-21 178.8 33.7 311 25-488 10-350 (383)
50 4abn_A Tetratricopeptide repea 99.8 3.7E-18 1.3E-22 196.8 22.7 227 334-720 81-318 (474)
51 2q7f_A YRRB protein; TPR, prot 99.8 1.4E-17 4.7E-22 170.1 22.7 214 321-699 23-237 (243)
52 2ooe_A Cleavage stimulation fa 99.8 3.6E-15 1.2E-19 173.1 45.4 224 374-811 255-496 (530)
53 3vtx_A MAMA; tetratricopeptide 99.8 2.4E-17 8.4E-22 162.7 23.1 146 323-488 7-152 (184)
54 1ouv_A Conserved hypothetical 99.8 1.3E-16 4.4E-21 167.9 29.9 236 57-482 2-261 (273)
55 2vq2_A PILW, putative fimbrial 99.8 1.2E-16 4.2E-21 160.4 28.2 215 142-483 4-222 (225)
56 3e4b_A ALGK; tetratricopeptide 99.8 3.4E-17 1.2E-21 187.6 26.1 352 150-837 7-383 (452)
57 2ho1_A Type 4 fimbrial biogene 99.8 3.3E-16 1.1E-20 161.6 27.6 148 321-488 37-186 (252)
58 4i17_A Hypothetical protein; T 99.7 5.2E-17 1.8E-21 166.2 21.3 208 145-487 6-224 (228)
59 2vq2_A PILW, putative fimbrial 99.7 6.9E-16 2.4E-20 154.9 28.8 149 322-488 9-158 (225)
60 4i17_A Hypothetical protein; T 99.7 3E-16 1E-20 160.6 25.4 154 323-489 9-165 (228)
61 3q15_A PSP28, response regulat 99.7 4.9E-16 1.7E-20 172.2 29.1 247 320-721 100-363 (378)
62 3q15_A PSP28, response regulat 99.7 2.7E-15 9.3E-20 166.2 34.4 314 24-488 9-347 (378)
63 4gyw_A UDP-N-acetylglucosamine 99.7 6.9E-17 2.3E-21 195.5 21.3 114 342-475 64-177 (723)
64 1xi4_A Clathrin heavy chain; a 99.7 1.5E-14 5.3E-19 179.5 42.0 269 323-839 1107-1382(1630)
65 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.4E-16 4.6E-21 165.8 20.0 246 39-466 17-269 (275)
66 3nf1_A KLC 1, kinesin light ch 99.7 1.5E-16 5.3E-21 167.9 20.2 241 140-475 21-310 (311)
67 1hz4_A MALT regulatory protein 99.7 1.3E-14 4.3E-19 159.6 36.0 298 319-809 12-324 (373)
68 4abn_A Tetratricopeptide repea 99.7 3.1E-16 1.1E-20 180.6 23.6 209 159-492 81-307 (474)
69 4gyw_A UDP-N-acetylglucosamine 99.7 3.1E-16 1.1E-20 189.8 23.6 143 327-489 15-157 (723)
70 4gco_A Protein STI-1; structur 99.7 9E-17 3.1E-21 151.4 14.4 121 347-487 5-125 (126)
71 4ga2_A E3 SUMO-protein ligase 99.7 4.6E-17 1.6E-21 157.7 10.8 137 332-488 8-145 (150)
72 1hz4_A MALT regulatory protein 99.7 1.8E-14 6.2E-19 158.3 33.0 283 358-837 15-318 (373)
73 1qqe_A Vesicular transport pro 99.7 4.2E-16 1.5E-20 167.3 18.7 237 142-488 32-285 (292)
74 3nf1_A KLC 1, kinesin light ch 99.7 5.3E-16 1.8E-20 163.8 19.1 274 6-423 9-308 (311)
75 3qky_A Outer membrane assembly 99.7 3.5E-15 1.2E-19 156.3 22.4 216 142-492 11-247 (261)
76 3urz_A Uncharacterized protein 99.7 1.5E-15 5.1E-20 154.8 18.6 116 356-489 3-134 (208)
77 2ond_A Cleavage stimulation fa 99.7 3.1E-14 1.1E-18 153.6 27.9 225 374-812 33-275 (308)
78 3as5_A MAMA; tetratricopeptide 99.6 7E-15 2.4E-19 142.4 20.0 147 322-488 9-155 (186)
79 3as5_A MAMA; tetratricopeptide 99.6 2.1E-14 7.2E-19 139.0 21.9 129 329-477 50-178 (186)
80 2ond_A Cleavage stimulation fa 99.6 6.2E-14 2.1E-18 151.3 27.9 217 338-722 33-269 (308)
81 3qky_A Outer membrane assembly 99.6 2.4E-14 8.1E-19 149.9 21.3 167 323-492 17-200 (261)
82 3gyz_A Chaperone protein IPGC; 99.6 1.2E-15 4.1E-20 149.0 10.5 126 340-487 21-146 (151)
83 1qqe_A Vesicular transport pro 99.6 3E-14 1E-18 152.8 21.6 210 364-721 44-267 (292)
84 3urz_A Uncharacterized protein 99.6 6.8E-15 2.3E-19 149.9 15.1 144 324-488 7-168 (208)
85 2pzi_A Probable serine/threoni 99.6 2.3E-14 7.9E-19 172.5 18.8 136 332-488 402-545 (681)
86 4ga2_A E3 SUMO-protein ligase 99.6 9.3E-15 3.2E-19 141.4 11.5 109 362-488 2-110 (150)
87 1xi4_A Clathrin heavy chain; a 99.6 2.3E-12 7.9E-17 160.3 35.3 116 659-837 1224-1341(1630)
88 3edt_B KLC 2, kinesin light ch 99.6 4.2E-14 1.4E-18 146.4 16.1 147 324-473 88-282 (283)
89 2pzi_A Probable serine/threoni 99.6 4E-14 1.4E-18 170.4 18.0 198 142-470 390-596 (681)
90 3edt_B KLC 2, kinesin light ch 99.5 7.5E-14 2.6E-18 144.6 17.4 245 39-422 13-281 (283)
91 2vgx_A Chaperone SYCD; alterna 99.5 2E-14 6.7E-19 139.0 11.8 127 342-488 8-134 (148)
92 2r5s_A Uncharacterized protein 99.5 1.1E-13 3.9E-18 136.5 15.4 144 325-489 10-156 (176)
93 2xcb_A PCRH, regulatory protei 99.5 4.4E-14 1.5E-18 134.6 11.6 127 342-488 5-131 (142)
94 3upv_A Heat shock protein STI1 99.5 1.6E-13 5.6E-18 127.0 14.9 117 354-488 1-123 (126)
95 3dra_A Protein farnesyltransfe 99.5 2.8E-12 9.4E-17 139.7 25.1 240 316-721 29-285 (306)
96 2yhc_A BAMD, UPF0169 lipoprote 99.5 9E-13 3.1E-17 135.5 20.0 163 323-488 6-195 (225)
97 2vsy_A XCC0866; transferase, g 99.5 4.6E-13 1.6E-17 156.9 19.9 136 334-489 2-137 (568)
98 2ifu_A Gamma-SNAP; membrane fu 99.5 5.1E-13 1.7E-17 144.3 18.7 144 334-488 4-166 (307)
99 3sz7_A HSC70 cochaperone (SGT) 99.5 2.9E-13 9.8E-18 131.7 14.1 117 354-488 8-124 (164)
100 2fo7_A Synthetic consensus TPR 99.5 2.6E-12 9E-17 117.0 19.1 132 325-476 5-136 (136)
101 3gyz_A Chaperone protein IPGC; 99.5 1.4E-13 4.8E-18 134.3 10.9 100 371-488 16-115 (151)
102 2ifu_A Gamma-SNAP; membrane fu 99.5 1.3E-12 4.5E-17 141.1 19.6 139 328-479 83-230 (307)
103 2yhc_A BAMD, UPF0169 lipoprote 99.5 3.4E-12 1.1E-16 131.2 21.4 139 323-478 43-219 (225)
104 3qou_A Protein YBBN; thioredox 99.5 9.3E-13 3.2E-17 141.2 17.7 149 323-491 119-269 (287)
105 4gcn_A Protein STI-1; structur 99.5 5.4E-13 1.8E-17 125.3 13.5 119 355-485 6-124 (127)
106 2lni_A Stress-induced-phosphop 99.5 7E-13 2.4E-17 121.8 14.0 118 354-489 13-130 (133)
107 1p5q_A FKBP52, FK506-binding p 99.4 1.1E-13 3.7E-18 152.2 9.8 140 334-492 126-279 (336)
108 2qfc_A PLCR protein; TPR, HTH, 99.4 9.5E-12 3.2E-16 133.0 24.1 107 358-474 156-268 (293)
109 2r5s_A Uncharacterized protein 99.4 5.9E-13 2E-17 131.4 13.3 116 354-488 3-119 (176)
110 2vyi_A SGTA protein; chaperone 99.4 2E-12 6.7E-17 117.8 15.5 119 354-490 9-127 (131)
111 1hh8_A P67PHOX, NCF-2, neutrop 99.4 1.8E-12 6.2E-17 130.3 16.7 158 324-488 9-166 (213)
112 2e2e_A Formate-dependent nitri 99.4 4.7E-13 1.6E-17 131.3 12.1 132 333-484 22-156 (177)
113 3dra_A Protein farnesyltransfe 99.4 3E-11 1E-15 131.5 27.3 233 371-816 47-297 (306)
114 4gco_A Protein STI-1; structur 99.4 2.8E-12 9.7E-17 120.4 16.0 111 323-453 15-125 (126)
115 3qou_A Protein YBBN; thioredox 99.4 3.3E-12 1.1E-16 136.9 18.1 117 354-488 114-230 (287)
116 2fbn_A 70 kDa peptidylprolyl i 99.4 9.5E-13 3.3E-17 132.1 11.8 141 334-493 17-172 (198)
117 3u3w_A Transcriptional activat 99.4 1.2E-11 4.2E-16 132.1 21.1 187 145-473 74-267 (293)
118 1elw_A TPR1-domain of HOP; HOP 99.4 6.4E-12 2.2E-16 112.4 15.5 114 356-487 3-116 (118)
119 3rkv_A Putative peptidylprolyl 99.4 3.6E-12 1.2E-16 123.6 14.9 118 357-492 11-147 (162)
120 4f3v_A ESX-1 secretion system 99.4 4E-12 1.4E-16 136.3 16.6 231 148-485 9-249 (282)
121 3u3w_A Transcriptional activat 99.4 6.8E-12 2.3E-16 134.1 18.2 151 327-488 81-247 (293)
122 1na0_A Designed protein CTPR3; 99.4 1.3E-11 4.3E-16 111.3 17.2 118 354-489 5-123 (125)
123 3q49_B STIP1 homology and U bo 99.4 5.3E-12 1.8E-16 117.6 15.0 118 354-489 6-128 (137)
124 2dba_A Smooth muscle cell asso 99.4 1E-11 3.5E-16 116.4 16.3 116 354-487 25-143 (148)
125 3rjv_A Putative SEL1 repeat pr 99.4 2.7E-11 9.2E-16 123.7 20.5 123 339-488 4-136 (212)
126 3dss_A Geranylgeranyl transfer 99.4 3.1E-10 1.1E-14 124.6 29.3 176 333-574 41-230 (331)
127 2qfc_A PLCR protein; TPR, HTH, 99.4 2.5E-11 8.6E-16 129.7 19.9 153 325-488 79-247 (293)
128 1a17_A Serine/threonine protei 99.3 2.4E-11 8.2E-16 116.1 17.4 131 323-473 15-147 (166)
129 2fo7_A Synthetic consensus TPR 99.3 6.4E-11 2.2E-15 107.6 19.0 113 358-488 2-114 (136)
130 2vsy_A XCC0866; transferase, g 99.3 1.4E-11 4.7E-16 144.3 18.4 142 323-484 25-169 (568)
131 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 7.2E-13 2.5E-17 151.9 7.2 141 334-493 247-401 (457)
132 1hh8_A P67PHOX, NCF-2, neutrop 99.3 2.2E-11 7.7E-16 122.2 17.2 110 358-488 7-132 (213)
133 1elr_A TPR2A-domain of HOP; HO 99.3 1.8E-11 6.3E-16 111.5 14.9 126 355-492 2-127 (131)
134 2hr2_A Hypothetical protein; a 99.3 6.7E-12 2.3E-16 123.2 12.5 119 358-486 12-145 (159)
135 3rjv_A Putative SEL1 repeat pr 99.3 1.1E-10 3.7E-15 119.2 20.9 126 336-485 68-208 (212)
136 2vgx_A Chaperone SYCD; alterna 99.3 7.2E-12 2.4E-16 120.9 11.2 94 377-488 7-100 (148)
137 1a17_A Serine/threonine protei 99.3 5.8E-11 2E-15 113.4 17.3 114 357-488 13-126 (166)
138 1hxi_A PEX5, peroxisome target 99.3 9E-12 3.1E-16 116.0 11.1 100 360-477 20-119 (121)
139 1b89_A Protein (clathrin heavy 99.3 3E-12 1E-16 144.9 8.7 271 323-841 34-311 (449)
140 2c2l_A CHIP, carboxy terminus 99.3 1.7E-11 6E-16 130.9 14.2 106 354-477 1-106 (281)
141 3q7a_A Farnesyltransferase alp 99.3 1.6E-10 5.5E-15 127.6 22.2 152 316-488 50-212 (349)
142 4b4t_Q 26S proteasome regulato 99.3 1.2E-11 3.9E-16 138.2 13.3 232 28-423 5-246 (434)
143 2xev_A YBGF; tetratricopeptide 99.3 4.7E-11 1.6E-15 109.9 14.3 117 358-488 3-121 (129)
144 2kck_A TPR repeat; tetratricop 99.3 1.4E-11 4.7E-16 109.3 9.5 106 354-477 3-111 (112)
145 2vyi_A SGTA protein; chaperone 99.3 2.1E-10 7.1E-15 104.2 17.3 119 322-460 13-131 (131)
146 1p5q_A FKBP52, FK506-binding p 99.2 6.8E-11 2.3E-15 129.8 16.2 132 322-473 148-295 (336)
147 4f3v_A ESX-1 secretion system 99.2 1.8E-10 6E-15 123.5 18.8 215 443-837 7-233 (282)
148 3upv_A Heat shock protein STI1 99.2 2.2E-10 7.4E-15 105.8 16.6 118 324-455 7-124 (126)
149 3dss_A Geranylgeranyl transfer 99.2 2.1E-09 7.2E-14 117.9 26.4 103 368-488 40-155 (331)
150 2lni_A Stress-induced-phosphop 99.2 1.7E-10 5.7E-15 105.7 14.8 116 323-458 18-133 (133)
151 3sz7_A HSC70 cochaperone (SGT) 99.2 1.9E-10 6.3E-15 111.6 15.7 97 323-423 13-109 (164)
152 3ro3_A PINS homolog, G-protein 99.2 1.5E-10 5.3E-15 108.7 14.2 143 322-476 10-162 (164)
153 1b89_A Protein (clathrin heavy 99.2 3.1E-11 1.1E-15 136.5 10.9 252 333-837 15-268 (449)
154 3q7a_A Farnesyltransferase alp 99.2 3.2E-09 1.1E-13 117.1 25.9 180 366-700 63-253 (349)
155 2e2e_A Formate-dependent nitri 99.2 9E-11 3.1E-15 114.9 11.9 104 367-488 20-126 (177)
156 4b4t_Q 26S proteasome regulato 99.2 1E-09 3.6E-14 122.3 21.3 222 148-474 6-247 (434)
157 3k9i_A BH0479 protein; putativ 99.2 5.8E-11 2E-15 108.9 9.1 102 369-488 2-106 (117)
158 2c2l_A CHIP, carboxy terminus 99.1 3.2E-10 1.1E-14 121.1 15.2 159 324-488 7-180 (281)
159 1zu2_A Mitochondrial import re 99.1 8.6E-11 2.9E-15 115.1 9.6 98 371-486 16-134 (158)
160 3gw4_A Uncharacterized protein 99.1 3.6E-10 1.2E-14 111.8 14.0 146 332-488 3-158 (203)
161 1na0_A Designed protein CTPR3; 99.1 1.5E-09 5E-14 97.6 16.9 115 323-457 11-125 (125)
162 1ihg_A Cyclophilin 40; ppiase 99.1 4.4E-10 1.5E-14 125.4 16.2 118 358-492 224-356 (370)
163 4gcn_A Protein STI-1; structur 99.1 4.4E-10 1.5E-14 105.3 13.6 93 327-422 14-112 (127)
164 2xcb_A PCRH, regulatory protei 99.1 4.4E-10 1.5E-14 106.7 13.8 98 323-424 20-117 (142)
165 1hxi_A PEX5, peroxisome target 99.1 2.7E-10 9.2E-15 105.9 12.0 95 325-423 21-115 (121)
166 1wao_1 Serine/threonine protei 99.1 7.4E-11 2.5E-15 136.1 9.5 129 332-480 17-158 (477)
167 3gw4_A Uncharacterized protein 99.1 4.2E-10 1.4E-14 111.3 13.6 145 323-477 28-181 (203)
168 1dce_A Protein (RAB geranylger 99.1 1.7E-09 5.9E-14 127.4 20.8 174 336-575 44-230 (567)
169 2fbn_A 70 kDa peptidylprolyl i 99.1 6E-10 2E-14 111.5 14.2 121 323-463 40-176 (198)
170 1elw_A TPR1-domain of HOP; HOP 99.1 2.3E-09 7.7E-14 95.5 16.6 111 323-453 6-116 (118)
171 1zu2_A Mitochondrial import re 99.1 2.2E-10 7.6E-15 112.2 10.6 110 334-484 15-145 (158)
172 3mv2_B Coatomer subunit epsilo 99.1 1.1E-08 3.8E-13 110.9 23.2 147 323-483 138-293 (310)
173 3q49_B STIP1 homology and U bo 99.1 9.9E-10 3.4E-14 102.0 12.9 99 323-425 11-109 (137)
174 3ro3_A PINS homolog, G-protein 99.1 2.2E-09 7.6E-14 100.6 14.7 122 357-488 9-140 (164)
175 1wao_1 Serine/threonine protei 99.1 1E-10 3.6E-15 134.8 6.6 115 355-487 4-118 (477)
176 2if4_A ATFKBP42; FKBP-like, al 99.0 1.1E-10 3.9E-15 128.2 6.2 114 357-488 179-309 (338)
177 2hr2_A Hypothetical protein; a 99.0 1.6E-09 5.6E-14 106.2 13.6 99 323-425 13-134 (159)
178 1dce_A Protein (RAB geranylger 99.0 1.6E-09 5.5E-14 127.6 16.2 146 323-488 65-237 (567)
179 2xev_A YBGF; tetratricopeptide 99.0 5.6E-09 1.9E-13 95.8 16.2 95 325-423 6-106 (129)
180 3rkv_A Putative peptidylprolyl 99.0 1.9E-09 6.4E-14 104.3 13.2 116 324-459 14-148 (162)
181 1elr_A TPR2A-domain of HOP; HO 99.0 3.4E-09 1.2E-13 96.2 13.8 114 324-458 7-127 (131)
182 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 2.2E-09 7.7E-14 122.8 15.3 122 323-464 270-406 (457)
183 2if4_A ATFKBP42; FKBP-like, al 99.0 2.8E-10 9.6E-15 125.1 7.1 136 323-478 181-334 (338)
184 1na3_A Designed protein CTPR2; 99.0 4E-09 1.4E-13 90.5 12.1 85 389-489 5-89 (91)
185 3k9i_A BH0479 protein; putativ 99.0 7.4E-10 2.5E-14 101.5 7.8 85 334-422 3-90 (117)
186 2dba_A Smooth muscle cell asso 99.0 7.3E-09 2.5E-13 96.7 14.4 96 323-422 30-128 (148)
187 1ihg_A Cyclophilin 40; ppiase 98.9 7E-09 2.4E-13 115.6 14.4 122 324-465 226-363 (370)
188 2l6j_A TPR repeat-containing p 98.9 8.8E-09 3E-13 91.7 11.6 84 393-492 4-93 (111)
189 2kck_A TPR repeat; tetratricop 98.9 9.1E-09 3.1E-13 90.8 11.4 94 327-423 12-107 (112)
190 2kat_A Uncharacterized protein 98.9 1.6E-08 5.5E-13 91.7 13.1 96 375-488 3-100 (115)
191 2l6j_A TPR repeat-containing p 98.9 7.8E-10 2.7E-14 98.6 3.8 102 356-469 3-104 (111)
192 3n71_A Histone lysine methyltr 98.8 1.9E-08 6.6E-13 116.3 12.7 146 326-480 314-472 (490)
193 1klx_A Cysteine rich protein B 98.8 6.6E-08 2.3E-12 92.0 14.3 121 335-485 9-137 (138)
194 2kat_A Uncharacterized protein 98.8 3.1E-08 1.1E-12 89.8 11.5 82 339-424 3-84 (115)
195 1na3_A Designed protein CTPR2; 98.8 4E-08 1.4E-12 84.1 10.8 86 354-457 6-91 (91)
196 4e6h_A MRNA 3'-END-processing 98.7 4.7E-05 1.6E-09 91.3 39.8 133 658-845 436-575 (679)
197 4e6h_A MRNA 3'-END-processing 98.7 0.00024 8.2E-09 85.2 44.6 225 374-812 326-575 (679)
198 2kc7_A BFR218_protein; tetratr 98.7 2.7E-08 9.2E-13 87.4 7.1 59 362-422 5-64 (99)
199 3ma5_A Tetratricopeptide repea 98.6 1E-07 3.6E-12 84.9 10.0 69 354-424 4-72 (100)
200 3mv2_B Coatomer subunit epsilo 98.6 2.6E-07 9E-12 100.2 14.7 145 325-489 104-267 (310)
201 3ma5_A Tetratricopeptide repea 98.6 1.8E-07 6.2E-12 83.4 11.3 84 388-488 3-88 (100)
202 3n71_A Histone lysine methyltr 98.6 1.5E-07 5.1E-12 108.8 13.2 156 22-220 304-470 (490)
203 3qww_A SET and MYND domain-con 98.6 3.1E-07 1.1E-11 104.5 13.4 103 369-480 310-424 (433)
204 2kc7_A BFR218_protein; tetratr 98.5 3.9E-07 1.3E-11 79.8 10.3 76 397-488 4-82 (99)
205 3qwp_A SET and MYND domain-con 98.5 1.1E-06 3.9E-11 99.8 15.2 115 365-488 295-424 (429)
206 3ly7_A Transcriptional activat 98.3 9.5E-06 3.2E-10 89.7 17.3 132 326-478 201-345 (372)
207 2v5f_A Prolyl 4-hydroxylase su 98.3 7.8E-06 2.7E-10 73.7 12.3 83 393-484 5-87 (104)
208 2uy1_A Cleavage stimulation fa 98.2 0.0013 4.5E-08 75.8 33.8 109 18-174 4-117 (493)
209 1klx_A Cysteine rich protein B 98.1 1.1E-05 3.9E-10 76.3 11.3 93 370-488 8-104 (138)
210 3qwp_A SET and MYND domain-con 98.1 5.8E-06 2E-10 94.0 10.3 118 329-456 295-426 (429)
211 3qww_A SET and MYND domain-con 98.1 9.3E-06 3.2E-10 92.3 11.8 110 26-178 297-414 (433)
212 1pc2_A Mitochondria fission pr 98.0 4.1E-05 1.4E-09 74.2 11.6 100 372-488 13-116 (152)
213 3bee_A Putative YFRE protein; 97.9 4E-05 1.4E-09 68.0 8.7 68 354-423 3-73 (93)
214 3ly7_A Transcriptional activat 97.8 0.00029 1E-08 77.8 16.8 133 341-488 180-321 (372)
215 2v5f_A Prolyl 4-hydroxylase su 97.8 0.00011 3.6E-09 66.1 10.5 79 356-450 4-87 (104)
216 1pc2_A Mitochondria fission pr 97.8 0.00013 4.4E-09 70.7 11.0 83 337-422 14-100 (152)
217 3bee_A Putative YFRE protein; 97.7 0.00015 5.2E-09 64.2 9.4 71 777-847 5-79 (93)
218 2uy1_A Cleavage stimulation fa 97.4 0.067 2.3E-06 61.5 29.6 84 335-422 28-118 (493)
219 3u64_A Protein TP_0956; tetrat 97.4 0.00084 2.9E-08 71.6 11.9 107 354-476 149-273 (301)
220 3u64_A Protein TP_0956; tetrat 97.3 0.00056 1.9E-08 72.9 9.4 85 336-423 178-270 (301)
221 4g26_A Pentatricopeptide repea 96.9 0.048 1.6E-06 62.8 21.4 130 336-484 85-217 (501)
222 1nzn_A CGI-135 protein, fissio 96.7 0.0083 2.9E-07 56.1 10.1 95 372-483 16-114 (126)
223 3ffl_A Anaphase-promoting comp 96.7 0.007 2.4E-07 59.1 10.0 129 358-487 21-165 (167)
224 4g26_A Pentatricopeptide repea 96.6 0.096 3.3E-06 60.3 20.9 92 328-422 112-204 (501)
225 1nzn_A CGI-135 protein, fissio 96.4 0.028 9.6E-07 52.5 11.5 85 336-423 16-104 (126)
226 3txn_A 26S proteasome regulato 96.3 0.34 1.2E-05 53.9 22.0 132 319-461 97-238 (394)
227 3ffl_A Anaphase-promoting comp 96.2 0.013 4.4E-07 57.3 8.4 143 21-195 12-165 (167)
228 1y8m_A FIS1; mitochondria, unk 94.6 0.31 1.1E-05 46.3 11.9 76 392-482 38-116 (144)
229 3o48_A Mitochondria fission 1 94.4 0.28 9.5E-06 46.1 10.7 87 377-481 27-116 (134)
230 3txn_A 26S proteasome regulato 94.3 5.6 0.00019 44.1 23.0 152 19-217 11-168 (394)
231 3kae_A CDC27, possible protein 94.1 1.2 4E-05 43.6 14.6 121 356-476 61-241 (242)
232 3kae_A CDC27, possible protein 94.0 0.6 2E-05 45.6 12.3 116 354-479 30-150 (242)
233 4b4t_P 26S proteasome regulato 93.9 3.1 0.0001 46.9 20.6 104 319-422 135-247 (445)
234 4h7y_A Dual specificity protei 93.2 0.7 2.4E-05 44.4 11.2 109 354-479 10-130 (161)
235 3mkq_B Coatomer subunit alpha; 90.5 4.8 0.00016 39.6 14.2 104 327-468 11-114 (177)
236 3o48_A Mitochondria fission 1 90.4 0.98 3.4E-05 42.4 8.7 66 356-422 39-107 (134)
237 1zbp_A Hypothetical protein VP 90.1 3.9 0.00013 42.9 13.9 130 330-478 6-135 (273)
238 4b4t_R RPN7, 26S proteasome re 90.0 1 3.6E-05 50.5 10.4 110 357-476 131-241 (429)
239 1y8m_A FIS1; mitochondria, unk 89.4 2.6 8.8E-05 40.0 10.8 68 354-422 36-106 (144)
240 4gns_B Protein CSD3, chitin bi 89.4 1.5 5.2E-05 52.7 11.6 117 334-468 261-396 (754)
241 2ff4_A Probable regulatory pro 89.1 6.1 0.00021 43.5 15.7 122 688-839 109-232 (388)
242 3mkq_A Coatomer beta'-subunit; 88.8 3.1 0.00011 49.4 14.0 48 329-383 660-707 (814)
243 2ff4_A Probable regulatory pro 88.6 3 0.0001 46.0 12.7 97 325-423 119-235 (388)
244 3mkq_B Coatomer subunit alpha; 88.4 8.1 0.00028 38.0 14.1 48 665-721 14-61 (177)
245 1ya0_A SMG-7 transcript varian 87.6 1.9 6.6E-05 49.4 10.5 79 395-489 154-232 (497)
246 1ya0_A SMG-7 transcript varian 87.3 2.1 7E-05 49.1 10.5 62 359-422 154-215 (497)
247 4h7y_A Dual specificity protei 85.9 5.1 0.00018 38.4 10.6 37 143-179 10-52 (161)
248 3mkq_A Coatomer beta'-subunit; 85.5 3.5 0.00012 49.0 11.8 48 365-419 660-707 (814)
249 4b4t_P 26S proteasome regulato 84.3 57 0.002 36.4 22.5 67 142-208 133-200 (445)
250 4fhn_B Nucleoporin NUP120; pro 83.5 5.8 0.0002 50.1 13.0 121 331-468 822-963 (1139)
251 4gns_B Protein CSD3, chitin bi 81.8 3 0.0001 50.1 8.9 60 323-384 339-398 (754)
252 1wfd_A Hypothetical protein 15 81.0 13 0.00045 32.4 10.6 42 15-56 3-44 (93)
253 3spa_A Mtrpol, DNA-directed RN 80.7 13 0.00044 46.2 13.8 98 359-473 129-231 (1134)
254 1zbp_A Hypothetical protein VP 80.2 7.4 0.00025 40.8 10.1 59 703-811 6-64 (273)
255 4b4t_R RPN7, 26S proteasome re 78.2 5.4 0.00019 44.6 9.1 97 326-422 136-237 (429)
256 4b4t_S RPN3, 26S proteasome re 75.4 2 6.9E-05 49.2 4.5 139 328-477 143-304 (523)
257 3spa_A Mtrpol, DNA-directed RN 71.7 28 0.00096 43.2 13.3 92 328-422 134-230 (1134)
258 2crb_A Nuclear receptor bindin 68.2 5.1 0.00017 34.9 4.2 31 691-721 10-42 (97)
259 3lpz_A GET4 (YOR164C homolog); 66.1 1.5E+02 0.0051 31.9 20.0 28 389-416 132-159 (336)
260 2w2u_A Hypothetical P60 katani 65.6 8.2 0.00028 33.0 5.1 34 22-55 14-47 (83)
261 4fhn_B Nucleoporin NUP120; pro 63.1 59 0.002 40.9 14.5 137 665-837 821-963 (1139)
262 2v6y_A AAA family ATPase, P60 61.8 10 0.00035 32.3 5.0 33 23-55 7-39 (83)
263 2crb_A Nuclear receptor bindin 60.6 8.8 0.0003 33.4 4.3 30 777-806 14-43 (97)
264 4b4t_S RPN3, 26S proteasome re 60.1 28 0.00097 39.8 9.7 73 141-218 226-300 (523)
265 4a5x_A MITD1, MIT domain-conta 58.5 12 0.00041 32.2 4.9 33 24-56 13-45 (86)
266 3t5x_A PCI domain-containing p 57.8 27 0.00091 34.9 8.1 52 777-828 13-69 (203)
267 2wpv_A GET4, UPF0363 protein Y 52.6 2.4E+02 0.008 30.0 19.9 27 391-417 132-158 (312)
268 3t5v_B Nuclear mRNA export pro 51.3 29 0.001 39.1 7.9 75 396-476 179-254 (455)
269 2v6x_A Vacuolar protein sortin 49.6 21 0.00072 30.3 5.0 33 23-55 9-41 (85)
270 2cpt_A SKD1 protein, vacuolar 48.1 28 0.00094 31.7 5.8 65 22-95 13-84 (117)
271 1wy6_A Hypothetical protein ST 45.2 2.1E+02 0.007 27.1 13.1 92 326-422 12-154 (172)
272 4gq2_M Nucleoporin NUP120; bet 43.4 1.8E+02 0.006 35.8 13.9 120 363-488 816-947 (950)
273 2ynq_A ESSB; membrane protein, 43.2 79 0.0027 30.3 8.2 49 28-79 9-59 (161)
274 3t5x_A PCI domain-containing p 40.4 67 0.0023 31.9 7.8 61 143-203 11-71 (203)
275 3ax2_A Mitochondrial import re 39.1 34 0.0012 28.5 4.4 32 691-722 14-45 (73)
276 2v6y_A AAA family ATPase, P60 38.5 33 0.0011 29.1 4.5 31 338-385 9-39 (83)
277 1wcr_A PTS system, N, N'-diace 37.8 34 0.0012 30.4 4.6 30 26-55 17-46 (103)
278 2w2u_A Hypothetical P60 katani 37.8 35 0.0012 29.0 4.5 31 338-385 17-47 (83)
279 2e2a_A Protein (enzyme IIA); h 37.0 36 0.0012 30.4 4.6 30 26-55 19-48 (105)
280 4a5x_A MITD1, MIT domain-conta 35.9 48 0.0017 28.3 5.1 36 772-807 10-45 (86)
281 3k1s_A PTS system, cellobiose- 34.0 43 0.0015 30.1 4.6 30 26-55 21-50 (109)
282 3l8r_A PTCA, putative PTS syst 33.0 45 0.0015 30.5 4.6 30 26-55 36-65 (120)
283 3ax2_A Mitochondrial import re 32.2 86 0.0029 26.0 5.8 31 782-812 21-51 (73)
284 4gq2_M Nucleoporin NUP120; bet 31.6 3.9E+02 0.013 32.7 14.3 113 663-811 817-931 (950)
285 2cwy_A Hypothetical protein TT 30.7 83 0.0028 27.3 5.8 63 361-426 5-72 (94)
286 2ijq_A Hypothetical protein; s 29.9 2.4E+02 0.0084 26.9 9.5 63 361-424 36-106 (161)
287 1wy6_A Hypothetical protein ST 29.8 2.2E+02 0.0076 26.9 8.7 33 440-472 122-154 (172)
288 2vkj_A TM1634; membrane protei 29.5 76 0.0026 27.4 5.1 34 25-58 51-84 (106)
289 1om2_A Protein (mitochondrial 29.3 51 0.0017 28.9 4.1 32 691-722 17-48 (95)
290 2cwy_A Hypothetical protein TT 26.7 1E+02 0.0035 26.7 5.7 67 782-850 5-81 (94)
291 2ynq_A ESSB; membrane protein, 25.0 94 0.0032 29.8 5.4 59 777-838 40-99 (161)
292 3re2_A Predicted protein; meni 24.6 5.7E+02 0.02 27.8 11.8 70 355-426 253-329 (472)
293 1qsa_A Protein (soluble lytic 23.8 4.5E+02 0.015 30.5 12.2 128 659-837 217-344 (618)
294 1wfd_A Hypothetical protein 15 23.5 1E+02 0.0034 26.6 5.0 33 142-174 11-43 (93)
295 2ijq_A Hypothetical protein; s 23.0 3.9E+02 0.014 25.4 9.5 73 778-850 32-117 (161)
296 2npm_A 14-3-3 domain containin 22.1 6.6E+02 0.022 25.8 14.1 29 323-351 30-58 (260)
297 3mkr_B Coatomer subunit alpha; 21.8 84 0.0029 33.6 5.0 30 27-56 102-131 (320)
298 3mv2_A Coatomer subunit alpha; 21.7 85 0.0029 33.6 5.0 30 26-55 113-142 (325)
299 3t5v_B Nuclear mRNA export pro 21.7 1.3E+02 0.0045 33.8 6.8 52 777-828 219-281 (455)
300 2br9_A 14-3-3E, 14-3-3 protein 21.6 6.3E+02 0.022 25.5 13.7 28 324-351 8-35 (234)
301 4b4t_O 26S proteasome regulato 20.2 6.8E+02 0.023 27.0 12.2 101 365-474 84-200 (393)
302 1om2_A Protein (mitochondrial 20.1 79 0.0027 27.7 3.5 31 448-478 25-55 (95)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.7e-33 Score=311.99 Aligned_cols=118 Identities=13% Similarity=0.067 Sum_probs=88.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 003047 32 KEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNI 111 (854)
Q Consensus 32 ~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 111 (854)
..|..+++.|+|++|++.|+++++.+|+++.++..++.+++..+. +.++...+.+++..
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~------~~~a~~~~~~a~~~--------------- 62 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR------LDRSAHFSTLAIKQ--------------- 62 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHH---------------
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhc---------------
Confidence 468899999999999999999999999999999999988775443 34455555555531
Q ss_pred CCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHH
Q 003047 112 GSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLL 191 (854)
Q Consensus 112 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l 191 (854)
+|.++..|+++|.+|...|+|++|+++|+++++..+...+ +++.+
T Consensus 63 ------------------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~l 107 (388)
T 1w3b_A 63 ------------------------------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID-----GYINL 107 (388)
T ss_dssp ------------------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-----HHHHH
T ss_pred ------------------------------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHH-----HHHHH
Confidence 4567778888999999999999999988888874333222 35556
Q ss_pred HHHHHHccCHHHHH
Q 003047 192 LDVALACHDAFRSA 205 (854)
Q Consensus 192 ~~vy~~~~~~~kA~ 205 (854)
+.+|...|++++|+
T Consensus 108 ~~~~~~~g~~~~A~ 121 (388)
T 1w3b_A 108 AAALVAAGDMEGAV 121 (388)
T ss_dssp HHHHHHHSCSSHHH
T ss_pred HHHHHHcCCHHHHH
Confidence 66666666666665
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1e-31 Score=297.72 Aligned_cols=369 Identities=19% Similarity=0.127 Sum_probs=305.4
Q ss_pred HHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCccc
Q 003047 151 NIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQ 230 (854)
Q Consensus 151 n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~ 230 (854)
.+|..++..|+|++|+++|+++++..+...+ +++.++.++...|++++|+ .++++++... +..
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~~~~~~a~---~~~~~a~~~~----p~~----- 66 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTG-----VLLLLSSIHFQCRRLDRSA---HFSTLAIKQN----PLL----- 66 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-----HHHHHHHHHHHTTCHHHHH---HHHHHHHHHC----TTC-----
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCCHHHHH---HHHHHHHhcC----CCc-----
Confidence 3688999999999999999999995444322 5777889999999999998 4667766542 110
Q ss_pred chhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhh
Q 003047 231 QSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLV 310 (854)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 310 (854)
T Consensus 67 -------------------------------------------------------------------------------- 66 (388)
T 1w3b_A 67 -------------------------------------------------------------------------------- 66 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC
Q 003047 311 DRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG 390 (854)
Q Consensus 311 ~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~ 390 (854)
.......+.+|...|++++|++.+++++.++ |+++.+++.+|.++...|++++|++.|++++. .+|+
T Consensus 67 ----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~ 133 (388)
T 1w3b_A 67 ----------AEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQ-YNPD 133 (388)
T ss_dssp ----------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH-HCTT
T ss_pred ----------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC
Confidence 0123335677888999999999999999999 99999999999999999999999999999999 7885
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Q 003047 391 ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 391 ~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL 470 (854)
...++.++|.+|..+|++++|+.+|++++.. .|....+|+++|.++...|++++|+.+|++++
T Consensus 134 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 196 (388)
T 1w3b_A 134 -LYCVRSDLGNLLKALGRLEEAKACYLKAIET----------------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 196 (388)
T ss_dssp -CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5678889999999999999999999999998 34567899999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCC
Q 003047 471 LVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPK 550 (854)
Q Consensus 471 ~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~ 550 (854)
.++|+++.+|..+|.++. ..+
T Consensus 197 ~~~p~~~~~~~~lg~~~~---~~~-------------------------------------------------------- 217 (388)
T 1w3b_A 197 TLDPNFLDAYINLGNVLK---EAR-------------------------------------------------------- 217 (388)
T ss_dssp HHCTTCHHHHHHHHHHHH---TTT--------------------------------------------------------
T ss_pred hcCCCcHHHHHHHHHHHH---HcC--------------------------------------------------------
Confidence 999999999999998877 210
Q ss_pred CChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCC
Q 003047 551 LSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGG 630 (854)
Q Consensus 551 ~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~ 630 (854)
.++.|..+|++|+.+.|...
T Consensus 218 -~~~~A~~~~~~al~~~p~~~----------------------------------------------------------- 237 (388)
T 1w3b_A 218 -IFDRAVAAYLRALSLSPNHA----------------------------------------------------------- 237 (388)
T ss_dssp -CTTHHHHHHHHHHHHCTTCH-----------------------------------------------------------
T ss_pred -CHHHHHHHHHHHHhhCcCCH-----------------------------------------------------------
Confidence 12559999999999988743
Q ss_pred chhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCC
Q 003047 631 TSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNR 709 (854)
Q Consensus 631 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr 709 (854)
.++..+|.++...|++.+|+.++++++. .|..+.++..+|.+| +..|+
T Consensus 238 --------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-----~~~g~ 286 (388)
T 1w3b_A 238 --------------------------VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL-----KEKGS 286 (388)
T ss_dssp --------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHH-----HHHSC
T ss_pred --------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-----HHcCC
Confidence 1245678889999999999999999987 778888887777744 46799
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHH
Q 003047 710 PKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFA 789 (854)
Q Consensus 710 ~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~ 789 (854)
+++|+.+|++++. .+ |. .+..+.++|.++.
T Consensus 287 ~~~A~~~~~~al~--~~--------------------------------------p~----------~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 287 VAEAEDCYNTALR--LC--------------------------------------PT----------HADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHHH--HC--------------------------------------TT----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--hC--------------------------------------cc----------cHHHHHHHHHHHH
Confidence 9999999999883 11 22 4677888999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCccccc
Q 003047 790 MQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLPS 846 (854)
Q Consensus 790 ~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~ 846 (854)
.+|++++|++++++++++.|+++.++..++.++.+.|++++|+..+++ .+..|..+.
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 374 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 999999999999999999999988899999999999999999999988 665565543
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-30 Score=303.23 Aligned_cols=484 Identities=13% Similarity=0.053 Sum_probs=365.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccC
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQT 105 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 105 (854)
.+..+...+..++..|+|++|+.+|++++...|+ ...++.++.+++..++ +.+++..+.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~---------- 145 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGN-PNDAFWLAQVYCCTGD------YARAKCLLTKEDL---------- 145 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHTTC------HHHHHHHHHHTCG----------
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCC-chHHHHHHHHHHHcCc------HHHHHHHHHHHhc----------
Confidence 4556677788889999999999999999999994 4778889988775543 3345555554331
Q ss_pred CCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCC-------
Q 003047 106 EGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEP------- 178 (854)
Q Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~------- 178 (854)
.+.+...++.++.+|...|++++|+++|+++......
T Consensus 146 ------------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 189 (597)
T 2xpi_A 146 ------------------------------------YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKL 189 (597)
T ss_dssp ------------------------------------GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------
T ss_pred ------------------------------------cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccc
Confidence 2335668999999999999999999999864332100
Q ss_pred ----CchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccc
Q 003047 179 ----IDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNS 254 (854)
Q Consensus 179 ----~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (854)
........+++.++.+|...|++++|+. .|++++... ++.
T Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~----p~~----------------------------- 233 (597)
T 2xpi_A 190 LMQDGGIKLEASMCYLRGQVYTNLSNFDRAKE---CYKEALMVD----AKC----------------------------- 233 (597)
T ss_dssp -CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHH---HHHHHHHHC----TTC-----------------------------
T ss_pred cccccccchhHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhC----chh-----------------------------
Confidence 0001123468889999999999999985 567776553 111
Q ss_pred hhhhhhhhhhhhhhhhhhhhh------hhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHH
Q 003047 255 DLAATVNASENALSRTLSEET------LEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKV 328 (854)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~ 328 (854)
...+... ..+....+... +.|.... .........+....+
T Consensus 234 --~~~~~~l-~~~~~~~~~~~~~~~~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~ 279 (597)
T 2xpi_A 234 --YEAFDQL-VSNHLLTADEEWDLVLKLNYSTYS-------------------------------KEDAAFLRSLYMLKL 279 (597)
T ss_dssp --HHHHHHH-HHTTCSCHHHHHHHHHHSCTHHHH-------------------------------GGGHHHHHHHHHTTS
T ss_pred --hHHHHHH-HHhhcccchhHHHHHHhcCCcccc-------------------------------cchHHHHHHHHHHHH
Confidence 0001100 00000000000 0011110 001111122222235
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCC
Q 003047 329 RFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK 408 (854)
Q Consensus 329 ~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~ 408 (854)
..|...|++++|++.+++++.. |.+..+++.+|..|...|++++|+++|++++. .+|. ...+++.++.+|...|+
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILE-IDPY-NLDVYPLHLASLHESGE 354 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CCTTHHHHHHHHHHHTC
T ss_pred HHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-cCcc-cHHHHHHHHHHHHHhCC
Confidence 5667789999999999998876 67899999999999999999999999999998 6774 45688899999999999
Q ss_pred HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+++|+..|++++.. .+....+++.+|.+|...|++++|+++|++++.+.|+++.+|..++.++.
T Consensus 355 ~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 418 (597)
T 2xpi_A 355 KNKLYLISNDLVDR----------------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA 418 (597)
T ss_dssp HHHHHHHHHHHHHH----------------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh----------------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999987 34567899999999999999999999999999999999999999999888
Q ss_pred HHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcC
Q 003047 489 MALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLN 568 (854)
Q Consensus 489 ~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p 568 (854)
. .+ .+++|..+|++++.+.|
T Consensus 419 ~---~g---------------------------------------------------------~~~~A~~~~~~~~~~~~ 438 (597)
T 2xpi_A 419 I---EG---------------------------------------------------------EHDQAISAYTTAARLFQ 438 (597)
T ss_dssp H---HT---------------------------------------------------------CHHHHHHHHHHHHHTTT
T ss_pred H---cC---------------------------------------------------------CHHHHHHHHHHHHHhCc
Confidence 3 20 24779999999998877
Q ss_pred CCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhH
Q 003047 569 YPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCR 648 (854)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~ 648 (854)
...
T Consensus 439 ~~~----------------------------------------------------------------------------- 441 (597)
T 2xpi_A 439 GTH----------------------------------------------------------------------------- 441 (597)
T ss_dssp TCS-----------------------------------------------------------------------------
T ss_pred cch-----------------------------------------------------------------------------
Confidence 633
Q ss_pred HhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCC
Q 003047 649 RENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNF 727 (854)
Q Consensus 649 ~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~ 727 (854)
.++..++.++...|++.+|+.++++++. .|.++..+..+|.+| +..|++++|+.+|++++. ..
T Consensus 442 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~--~~- 505 (597)
T 2xpi_A 442 --------LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVA-----FNKSDMQTAINHFQNALL--LV- 505 (597)
T ss_dssp --------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHH--HH-
T ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-----HHhCCHHHHHHHHHHHHH--hh-
Confidence 1245678899999999999999999997 888898998888755 478999999999999983 10
Q ss_pred CCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003047 728 DLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSI 807 (854)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~ 807 (854)
|. .+..|+. .+.++.++|.++...|++++|++.+++++++
T Consensus 506 -------------------------------------~~--~~~~p~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 506 -------------------------------------KK--TQSNEKP-WAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp -------------------------------------HH--SCCCSGG-GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------------------------------hc--cccchhh-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 00 0011111 3788999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCccccc
Q 003047 808 LPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLPS 846 (854)
Q Consensus 808 ~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~ 846 (854)
.|+++.++..++.++.+.|++++|...+++ ....|.++.
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 585 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM 585 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH
Confidence 999999999999999999999999999998 555566554
No 4
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.2e-29 Score=283.61 Aligned_cols=465 Identities=13% Similarity=0.062 Sum_probs=335.6
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcc
Q 003047 24 LSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGE 103 (854)
Q Consensus 24 ~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 103 (854)
...+..++..|..++..|+|++|+..|+++++.+| ++.+++++|.+++..++ +.+++..+.+.+..
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~------- 68 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGD------LKKVVEMSTKALEL------- 68 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTC------HHHHHHHHHHHHHH-------
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhh------HHHHHHHHHHHhcc-------
Confidence 35688999999999999999999999999999999 79999999999886643 55677777777741
Q ss_pred cCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhh
Q 003047 104 QTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETT 183 (854)
Q Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~ 183 (854)
+|++..+++++|.+|..+|+|++|+.+|++++...+......
T Consensus 69 --------------------------------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 110 (514)
T 2gw1_A 69 --------------------------------------KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASI 110 (514)
T ss_dssp --------------------------------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGT
T ss_pred --------------------------------------ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchH
Confidence 456778999999999999999999999999999654433332
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhh
Q 003047 184 ALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNAS 263 (854)
Q Consensus 184 ~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (854)
. .++..+.......++...+..++++.......... ++ . .........| . .
T Consensus 111 ~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~-~-~~~~~~~~~~---~-------~-------- 161 (514)
T 2gw1_A 111 E-----PMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ----PA-K-ERKDKQENLP---S-------V-------- 161 (514)
T ss_dssp H-----HHHHHHHHHHHHHHHTTC---------------------------------CCC---C-------H--------
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC----hh-h-HHHhhccCCc---h-------h--------
Confidence 1 11222222222333333233333222110000000 00 0 0000000000 0 0
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHH---hcCHHHH
Q 003047 264 ENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLL---TRNLKHA 340 (854)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~---~~~~~~A 340 (854)
.....+...+ ...+... .+ . .+ ......+.++.+++. .|++++|
T Consensus 162 ---------~~~~~~~~~~---~~~~~~~-----------~~-----~-~~----~~~~~~~~~~~~~~~~~~~~~~~~A 208 (514)
T 2gw1_A 162 ---------TSMASFFGIF---KPELTFA-----------NY-----D-ES----NEADKELMNGLSNLYKRSPESYDKA 208 (514)
T ss_dssp ---------HHHHHHHTTS---CCCCCCS-----------SC-----C-SS----CHHHHHHHHHHHHHSSCCTTHHHHH
T ss_pred ---------HHHHHHHhhc---CHHHHHH-----------Hh-----c-CC----cHHHHHHHHHHHHHHhhhhccHHHH
Confidence 0000000000 0000000 00 0 00 112345566777776 8999999
Q ss_pred HHHHHHHHH-----h--c-C----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCC
Q 003047 341 KREVKLAMN-----I--A-R----GKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK 408 (854)
Q Consensus 341 ~~elk~al~-----~--~-~----~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~ 408 (854)
++.+++++. + . . .|.++.+++.+|.++...|++++|+++|++++. .+|. ..++..+|.+|...|+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~-~~~~--~~~~~~l~~~~~~~~~ 285 (514)
T 2gw1_A 209 DESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE-LFPR--VNSYIYMALIMADRND 285 (514)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH-HCCC--HHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCcc--HHHHHHHHHHHHHCCC
Confidence 999999999 6 3 0 044567889999999999999999999999999 7885 7899999999999999
Q ss_pred HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+++|+.+|++++.. .+....+++++|.++...|++++|+.+|++++.+.|+++.+|..+|.++.
T Consensus 286 ~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 349 (514)
T 2gw1_A 286 STEYYNYFDKALKL----------------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY 349 (514)
T ss_dssp CTTGGGHHHHHHTT----------------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhc----------------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHH
Confidence 99999999999997 23456789999999999999999999999999999999999999998766
Q ss_pred HHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcC
Q 003047 489 MALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLN 568 (854)
Q Consensus 489 ~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p 568 (854)
.. ..++.|..+|++++.+.|
T Consensus 350 ---~~---------------------------------------------------------~~~~~A~~~~~~~~~~~~ 369 (514)
T 2gw1_A 350 ---RE---------------------------------------------------------NKFDDCETLFSEAKRKFP 369 (514)
T ss_dssp ---TT---------------------------------------------------------TCHHHHHHHHHHHHHHST
T ss_pred ---Hc---------------------------------------------------------CCHHHHHHHHHHHHHHcc
Confidence 21 024779999999999887
Q ss_pred CCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhH
Q 003047 569 YPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCR 648 (854)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~ 648 (854)
...
T Consensus 370 ~~~----------------------------------------------------------------------------- 372 (514)
T 2gw1_A 370 EAP----------------------------------------------------------------------------- 372 (514)
T ss_dssp TCS-----------------------------------------------------------------------------
T ss_pred cCH-----------------------------------------------------------------------------
Confidence 743
Q ss_pred HhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChH------HHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 003047 649 RENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSR------IYIFLGHIYAAEALCL---LNRPKEAAEHFS 718 (854)
Q Consensus 649 ~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~------~~~~la~lY~aeAl~~---lgr~~eAl~~l~ 718 (854)
.++..+|.++...|++.+|+.++++++. .|..+. .+..+|. ++.. .|++++|+.+++
T Consensus 373 --------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~A~~~~~ 439 (514)
T 2gw1_A 373 --------EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT-----LLTRNPTVENFIEATNLLE 439 (514)
T ss_dssp --------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH-----HHHTSCCTTHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH-----HHhhhhhcCCHHHHHHHHH
Confidence 1255778999999999999999999997 555543 7766666 5557 899999999999
Q ss_pred hhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHH
Q 003047 719 MYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAH 798 (854)
Q Consensus 719 ~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~ 798 (854)
+++. .+ |. .+.+++++|.++..+|++++|.
T Consensus 440 ~a~~--~~--------------------------------------~~----------~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 440 KASK--LD--------------------------------------PR----------SEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHH--HC--------------------------------------TT----------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHH--hC--------------------------------------cc----------cHHHHHHHHHHHHHhcCHHHHH
Confidence 9993 11 22 4678899999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHH
Q 003047 799 HFVTQALSILPRSTEATLTAIYV 821 (854)
Q Consensus 799 ~~~~~Al~~~P~~~~a~~l~~y~ 821 (854)
..+++++++.|+++.++..+.+.
T Consensus 470 ~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 470 TLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHH
Confidence 99999999999998877766555
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=6.7e-29 Score=285.22 Aligned_cols=465 Identities=15% Similarity=0.091 Sum_probs=327.7
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhc
Q 003047 23 VLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATG 102 (854)
Q Consensus 23 ~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (854)
....+..++..|..++..|+|++|++.|++++..+|+++.+++++|.+++..+ ++.+++..+.+.+..
T Consensus 21 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g------~~~~A~~~~~~al~~------ 88 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTG------DLEKVIEFTTKALEI------ 88 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHT------CHHHHHHHHHHHHHH------
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC------CHHHHHHHHHHHHhc------
Confidence 34568899999999999999999999999999999999999999999988665 355688888887741
Q ss_pred ccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchh
Q 003047 103 EQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDET 182 (854)
Q Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~ 182 (854)
+|++...++++|.+|..+|+|++|++.|+ .+...+...+.
T Consensus 89 ---------------------------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~ 128 (537)
T 3fp2_A 89 ---------------------------------------KPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGA 128 (537)
T ss_dssp ---------------------------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------
T ss_pred ---------------------------------------CCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChH
Confidence 46678899999999999999999999996 66533332221
Q ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhh
Q 003047 183 TALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNA 262 (854)
Q Consensus 183 ~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (854)
.+..+...+...+|+ ..+++.+...... ... ..|+.. ....+.
T Consensus 129 --------~~~~~~~~~~~~~a~---~~~~~~l~~~~~~-~~~---------------~~~~~~--------~~~~~~-- 171 (537)
T 3fp2_A 129 --------SIEPMLERNLNKQAM---KVLNENLSKDEGR-GSQ---------------VLPSNT--------SLASFF-- 171 (537)
T ss_dssp -----------CHHHHHHHHHHH---HHHHHHCC--------C---------------CCCCHH--------HHHHHH--
T ss_pred --------HHHHHHHHHHHHHHH---HHHHHHHHhCccc-ccc---------------ccchHh--------HHHHHH--
Confidence 133444555667776 4556665542000 000 000000 000000
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHH
Q 003047 263 SENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKR 342 (854)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~ 342 (854)
.. .........+... .. ...........++..+.. .........+++++|+.
T Consensus 172 --~~--~~~~~~~~~~~~~---------~~-~~~~~~~~~~~l~~~~~~--------------~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 172 --GI--FDSHLEVSSVNTS---------SN-YDTAYALLSDALQRLYSA--------------TDEGYLVANDLLTKSTD 223 (537)
T ss_dssp --HT--SCHHHHHHTSCCC---------CS-SCSSHHHHHHHHHHHHTC--------------SHHHHHHHHHHHHHHHH
T ss_pred --Hh--cChHHHHHHHhhc---------cc-cccHHHHHHHHHHHHHHh--------------hhhhhHHHHHHHHHHHH
Confidence 00 0000000000000 00 000000000111111100 01233344578899999
Q ss_pred HHHHHHHhcCCCCCHH-------HHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHH
Q 003047 343 EVKLAMNIARGKDSSL-------ALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVF 415 (854)
Q Consensus 343 elk~al~~~~~P~~~~-------a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~ 415 (854)
.+++++... |+++. +++.+|.++...|++++|+++|++++. .+|. ..++..+|.+|...|++++|+.+
T Consensus 224 ~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~A~~~ 298 (537)
T 3fp2_A 224 MYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN-LHPT--PNSYIFLALTLADKENSQEFFKF 298 (537)
T ss_dssp HHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCC--HHHHHHHHHHTCCSSCCHHHHHH
T ss_pred HHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh-cCCC--chHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999 99966 577889999999999999999999999 7884 67899999999999999999999
Q ss_pred HHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Q 003047 416 LSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGL 495 (854)
Q Consensus 416 f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~ 495 (854)
|++++.. .+....+++++|.++...|++++|+.+|++++.+.|+++.+|..+|.++. ..+
T Consensus 299 ~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~---~~g- 358 (537)
T 3fp2_A 299 FQKAVDL----------------NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY---KQG- 358 (537)
T ss_dssp HHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH---HTT-
T ss_pred HHHHhcc----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HcC-
Confidence 9999998 34467899999999999999999999999999999999999999999988 210
Q ss_pred cCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCccccc
Q 003047 496 VAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYS 575 (854)
Q Consensus 496 ~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~ 575 (854)
.++.|..+|++++.+.|....
T Consensus 359 --------------------------------------------------------~~~~A~~~~~~~~~~~~~~~~--- 379 (537)
T 3fp2_A 359 --------------------------------------------------------KFTESEAFFNETKLKFPTLPE--- 379 (537)
T ss_dssp --------------------------------------------------------CHHHHHHHHHHHHHHCTTCTH---
T ss_pred --------------------------------------------------------CHHHHHHHHHHHHHhCCCChH---
Confidence 247799999999999887431
Q ss_pred ccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHH
Q 003047 576 KFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIK 655 (854)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 655 (854)
T Consensus 380 -------------------------------------------------------------------------------- 379 (537)
T 3fp2_A 380 -------------------------------------------------------------------------------- 379 (537)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHH-HHHHHHHHHhc----------CCHHHHHHHHHhhhcC
Q 003047 656 QALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLG-HIYAAEALCLL----------NRPKEAAEHFSMYLSG 723 (854)
Q Consensus 656 ~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la-~lY~aeAl~~l----------gr~~eAl~~l~~~l~~ 723 (854)
++..+|.++...|++.+|+.++++++. .|..+..+..++ ....+.++..+ |++++|+.+|++++.
T Consensus 380 --~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~- 456 (537)
T 3fp2_A 380 --VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE- 456 (537)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH-
T ss_pred --HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH-
Confidence 245678899999999999999999996 444443333333 22334456667 999999999999993
Q ss_pred CCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003047 724 GDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQ 803 (854)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~ 803 (854)
.+ |. .+.++++||.++..+|++++|.+++++
T Consensus 457 -~~--------------------------------------p~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 457 -LD--------------------------------------PR----------SEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp -HC--------------------------------------TT----------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -hC--------------------------------------CC----------CHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 11 32 467889999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHH
Q 003047 804 ALSILPRSTEATLTAIY 820 (854)
Q Consensus 804 Al~~~P~~~~a~~l~~y 820 (854)
++++.|+.+.......+
T Consensus 488 al~~~~~~~~~~~~~~~ 504 (537)
T 3fp2_A 488 SAILARTMDEKLQATTF 504 (537)
T ss_dssp HHHHC--CHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHhH
Confidence 99999999766554443
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.6e-28 Score=286.75 Aligned_cols=464 Identities=14% Similarity=0.032 Sum_probs=333.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 003047 29 TLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGG 108 (854)
Q Consensus 29 ~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 108 (854)
.++..|..++..|++++|+..|++++.. |.++.+++.++.+++..+. +.+++..+.+.. +..
T Consensus 119 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~----------~~~- 180 (597)
T 2xpi_A 119 DAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYD------WQGALNLLGETN----------PFR- 180 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTC------HHHHHHHHCSSC----------TTC-
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhh------HHHHHHHHhccC----------Ccc-
Confidence 3445567788999999999999999765 7789999999988775543 333444333211 110
Q ss_pred CCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHH
Q 003047 109 GNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQIC 188 (854)
Q Consensus 109 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~ 188 (854)
..+... ... .....+.+.++..|+.+|.+|...|++++|+++|+++++..+...+ +.
T Consensus 181 -~~~~~~-----------~~~------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~ 237 (597)
T 2xpi_A 181 -KDEKNA-----------NKL------LMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE-----AF 237 (597)
T ss_dssp ----------------------------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----HH
T ss_pred -cccccc-----------ccc------cccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH-----HH
Confidence 000000 000 0001113457889999999999999999999999999985433222 34
Q ss_pred HHHHHHHHHccCHHHHHHHHHH--HHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhh
Q 003047 189 LLLLDVALACHDAFRSADVLIY--LEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENA 266 (854)
Q Consensus 189 l~l~~vy~~~~~~~kA~~~l~~--lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (854)
..++.++...+....+. +.. +++..... +. .....++..+..
T Consensus 238 ~~l~~~~~~~~~~~~~~--~~~l~~~~~~~~~----~~------------------------------~~~~~~~~~~~~ 281 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDL--VLKLNYSTYSKED----AA------------------------------FLRSLYMLKLNK 281 (597)
T ss_dssp HHHHHTTCSCHHHHHHH--HHHSCTHHHHGGG----HH------------------------------HHHHHHHTTSCT
T ss_pred HHHHHhhcccchhHHHH--HHhcCCcccccch----HH------------------------------HHHHHHHHHHHH
Confidence 55556555444333332 111 11111000 00 000000000000
Q ss_pred hh--hhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 003047 267 LS--RTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREV 344 (854)
Q Consensus 267 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~el 344 (854)
.. ..+.++.--|.... +. + -........+.+|...|++++|++.+
T Consensus 282 ~~~~g~~~~A~~~~~~~~-----~~------------------------~----~~~~~~~~l~~~~~~~g~~~~A~~~~ 328 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSIN-----GL------------------------E----KSSDLLLCKADTLFVRSRFIDVLAIT 328 (597)
T ss_dssp TTTHHHHHHHHHHHHTST-----TG------------------------G----GCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCcchHHHHHHHHHHhh-----cC------------------------C----chHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 00 01111111111111 00 0 00124445688899999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 003047 345 KLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 345 k~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~ 424 (854)
++++..+ |++..++..++.++...|++++|++++++++. ..|. ...+++.+|.+|.+.|++++|+.+|++++..
T Consensus 329 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 402 (597)
T 2xpi_A 329 TKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVD-RHPE-KAVTWLAVGIYYLCVNKISEARRYFSKSSTM-- 402 (597)
T ss_dssp HHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTT-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-hCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--
Confidence 9999999 99999999999999999999999999999998 6784 5789999999999999999999999999997
Q ss_pred hcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCC
Q 003047 425 SLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSD 504 (854)
Q Consensus 425 ~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~ 504 (854)
.+....+|+.+|.+|...|++++|+++|++++.+.|+++.+|..+|.+|.. .+
T Consensus 403 --------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g---------- 455 (597)
T 2xpi_A 403 --------------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQ---LG---------- 455 (597)
T ss_dssp --------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHH---HT----------
T ss_pred --------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH---cC----------
Confidence 345678999999999999999999999999999999999999999999882 20
Q ss_pred CcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCc
Q 003047 505 GSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSS 584 (854)
Q Consensus 505 ~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~ 584 (854)
.++.|..+|++++.+.|...
T Consensus 456 -----------------------------------------------~~~~A~~~~~~~~~~~~~~~------------- 475 (597)
T 2xpi_A 456 -----------------------------------------------NILLANEYLQSSYALFQYDP------------- 475 (597)
T ss_dssp -----------------------------------------------CHHHHHHHHHHHHHHCCCCH-------------
T ss_pred -----------------------------------------------CHHHHHHHHHHHHHhCCCCh-------------
Confidence 24779999999999887733
Q ss_pred ccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHH
Q 003047 585 VEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAY 664 (854)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~ 664 (854)
.++..++.
T Consensus 476 ------------------------------------------------------------------------~~~~~l~~ 483 (597)
T 2xpi_A 476 ------------------------------------------------------------------------LLLNELGV 483 (597)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ------------------------------------------------------------------------HHHHHHHH
Confidence 12567788
Q ss_pred HHHHcCCHHHHHHHHHHHHcC-------CCC-hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhh
Q 003047 665 VELEMENPVKALAAARSLLEL-------PDC-SRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDC 736 (854)
Q Consensus 665 v~l~lg~~~~Al~~~~~lL~~-------p~~-~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~ 736 (854)
++...|++.+|+..+++++.. |+. ...+..+|. +++..|++++|+.++++++. .
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~--~----------- 545 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH-----AYRKLKMYDAAIDALNQGLL--L----------- 545 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHH-----HHHHTTCHHHHHHHHHHHHH--H-----------
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHH-----HHHHhcCHHHHHHHHHHHHH--h-----------
Confidence 999999999999999999863 222 567766666 55679999999999999993 1
Q ss_pred hhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 003047 737 EQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATL 816 (854)
Q Consensus 737 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~ 816 (854)
.|. .+.++++||.+|...|++++|.+++++++++.|+++.++.
T Consensus 546 ---------------------------~p~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 588 (597)
T 2xpi_A 546 ---------------------------STN----------DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASD 588 (597)
T ss_dssp ---------------------------SSC----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ---------------------------CCC----------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 132 4788999999999999999999999999999999998888
Q ss_pred HHHHHH
Q 003047 817 TAIYVD 822 (854)
Q Consensus 817 l~~y~~ 822 (854)
.++.++
T Consensus 589 ~l~~~~ 594 (597)
T 2xpi_A 589 LLKRAL 594 (597)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 777654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.7e-27 Score=268.30 Aligned_cols=383 Identities=11% Similarity=0.017 Sum_probs=309.4
Q ss_pred hhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccC
Q 003047 143 FDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQ 222 (854)
Q Consensus 143 ~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~ 222 (854)
.+++..++++|.+++..|+|++|+++|+++++.. | + ..+++.++.+|...|++++|+ ..+++++.+.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p-~----~~~~~~la~~~~~~g~~~~A~---~~~~~al~~~---- 69 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELK-E-D----PVFYSNLSACYVSVGDLKKVV---EMSTKALELK---- 69 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-C-C----HHHHHHHHHHHHHHTCHHHHH---HHHHHHHHHC----
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-c-c----HHHHHhHHHHHHHHhhHHHHH---HHHHHHhccC----
Confidence 3577899999999999999999999999999955 3 2 135788999999999999998 4667777553
Q ss_pred CCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCcc
Q 003047 223 VDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSS 302 (854)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (854)
++.
T Consensus 70 p~~----------------------------------------------------------------------------- 72 (514)
T 2gw1_A 70 PDY----------------------------------------------------------------------------- 72 (514)
T ss_dssp SCC-----------------------------------------------------------------------------
T ss_pred hHH-----------------------------------------------------------------------------
Confidence 110
Q ss_pred chhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCC---------------------------
Q 003047 303 NELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKD--------------------------- 355 (854)
Q Consensus 303 ~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~--------------------------- 355 (854)
....+.++.+|..+|++++|+..+++++... |.
T Consensus 73 ------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (514)
T 2gw1_A 73 ------------------SKVLLRRASANEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGD 132 (514)
T ss_dssp ------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC---
T ss_pred ------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123345777788888888888888887777 53
Q ss_pred ----------------------------------------------------CHHHHHHHHHHHHH---hcCHHHHHHHH
Q 003047 356 ----------------------------------------------------SSLALFLKSQLEYA---RRNHRKAIKLL 380 (854)
Q Consensus 356 ----------------------------------------------------~~~a~~lla~ly~~---~g~~~kAl~~l 380 (854)
+...++.+|..++. .|++++|+++|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 212 (514)
T 2gw1_A 133 IDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESF 212 (514)
T ss_dssp ------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHH
T ss_pred HHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHH
Confidence 37777888888886 89999999999
Q ss_pred HHhhh-----c-cCCC------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHH
Q 003047 381 LALSN-----R-TEMG------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYN 448 (854)
Q Consensus 381 ~kal~-----~-~dp~------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~n 448 (854)
++++. . ..|. ..+.+++.+|.+|...|++++|+.+|++++.. .+. ..++++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----------------~~~-~~~~~~ 275 (514)
T 2gw1_A 213 TKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL----------------FPR-VNSYIY 275 (514)
T ss_dssp HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH----------------CCC-HHHHHH
T ss_pred HHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----------------Ccc-HHHHHH
Confidence 99887 2 1221 34678888999999999999999999999997 234 788999
Q ss_pred HHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCc
Q 003047 449 CGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFR 528 (854)
Q Consensus 449 LG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~ 528 (854)
+|.++...|++++|+.+|++++.++|+++.+|..+|.++.. .+
T Consensus 276 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~---------------------------------- 318 (514)
T 2gw1_A 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI---LQ---------------------------------- 318 (514)
T ss_dssp HHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH---TT----------------------------------
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH---hC----------------------------------
Confidence 99999999999999999999999999999999999998882 10
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccccccccccc
Q 003047 529 KNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLD 608 (854)
Q Consensus 529 ~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (854)
.++.|..+|+.++.+.|...
T Consensus 319 -----------------------~~~~A~~~~~~~~~~~~~~~------------------------------------- 338 (514)
T 2gw1_A 319 -----------------------NYDQAGKDFDKAKELDPENI------------------------------------- 338 (514)
T ss_dssp -----------------------CTTHHHHHHHHHHHTCSSCS-------------------------------------
T ss_pred -----------------------CHHHHHHHHHHHHHhChhhH-------------------------------------
Confidence 12559999999999887743
Q ss_pred ccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCC
Q 003047 609 SKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPD 687 (854)
Q Consensus 609 ~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~ 687 (854)
.++..+|.++...|++.+|+.++++++. .|.
T Consensus 339 ------------------------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 370 (514)
T 2gw1_A 339 ------------------------------------------------FPYIQLACLAYRENKFDDCETLFSEAKRKFPE 370 (514)
T ss_dssp ------------------------------------------------HHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT
T ss_pred ------------------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 1255678899999999999999999997 788
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCC
Q 003047 688 CSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRD 767 (854)
Q Consensus 688 ~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~ 767 (854)
.+..+..+|.+| ..+|++++|+.++++++. .+. . .|.
T Consensus 371 ~~~~~~~la~~~-----~~~~~~~~A~~~~~~a~~--~~~---------------------~--------------~~~- 407 (514)
T 2gw1_A 371 APEVPNFFAEIL-----TDKNDFDKALKQYDLAIE--LEN---------------------K--------------LDG- 407 (514)
T ss_dssp CSHHHHHHHHHH-----HHTTCHHHHHHHHHHHHH--HHH---------------------T--------------SSS-
T ss_pred CHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHH--hhh---------------------c--------------cch-
Confidence 888888777754 578999999999999983 100 0 010
Q ss_pred CCCCCchhhhHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcc
Q 003047 768 TMFPKPEEARGTLYVNIAAMFAM---QGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRF 843 (854)
Q Consensus 768 ~~p~~~~~a~a~~~~NLa~~~~~---~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~ 843 (854)
. ...+.+++++|.++.. .|++++|..++++++.+.|+++.++..++.++.+.|++++|+..+++ ....|.
T Consensus 408 ----~--~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 408 ----I--YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp ----C--SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred ----H--HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 0 0025688999999999 99999999999999999999999999999999999999999999988 555565
Q ss_pred ccc
Q 003047 844 LPS 846 (854)
Q Consensus 844 ~~~ 846 (854)
.|.
T Consensus 482 ~~~ 484 (514)
T 2gw1_A 482 MEE 484 (514)
T ss_dssp HHH
T ss_pred cHH
Confidence 544
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=2.1e-26 Score=264.34 Aligned_cols=411 Identities=13% Similarity=0.054 Sum_probs=292.0
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccccc
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVN 221 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~ 221 (854)
..+.+..++++|.+++..|+|++|+++|+++++..+... .+++.++.+|..+|++++|+ ..+++++.+.
T Consensus 21 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~---~~~~~al~~~--- 89 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP-----VFYSNISACYISTGDLEKVI---EFTTKALEIK--- 89 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHTCHHHHH---HHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc-----HHHHHHHHHHHHcCCHHHHH---HHHHHHHhcC---
Confidence 345788999999999999999999999999999544322 36888999999999999998 5678887664
Q ss_pred CCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhh--hhhhhhhhhhhhhhhccccCCCCCCCC
Q 003047 222 QVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLS--EETLEDDTVLALSSLEISGQNLTRPVG 299 (854)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (854)
++. ...+...+. +....+ ++++++...+ ...+.
T Consensus 90 -p~~-------------------------------~~~~~~la~-~~~~~g~~~~A~~~~~~~---~~~~~--------- 124 (537)
T 3fp2_A 90 -PDH-------------------------------SKALLRRAS-ANESLGNFTDAMFDLSVL---SLNGD--------- 124 (537)
T ss_dssp -TTC-------------------------------HHHHHHHHH-HHHHHTCHHHHHHHHHHH---C-------------
T ss_pred -Cch-------------------------------HHHHHHHHH-HHHHcCCHHHHHHHHHHH---hcCCC---------
Confidence 111 000111111 111111 1222211111 00000
Q ss_pred CccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH--------H-------------
Q 003047 300 LSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS--------L------------- 358 (854)
Q Consensus 300 ~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~--------~------------- 358 (854)
... . ....++..+..++|.+.++.++... |.+. .
T Consensus 125 ----------------~~~--~-----~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 125 ----------------FDG--A-----SIEPMLERNLNKQAMKVLNENLSKD--EGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHCC---------CCCCCHHHHHHHHHTSCHHHH
T ss_pred ----------------CCh--H-----HHHHHHHHHHHHHHHHHHHHHHHhC--ccccccccchHhHHHHHHHhcChHHH
Confidence 000 0 0112223333344555555554432 2111 0
Q ss_pred ----------------HHHHH--------HHHHHHhcCHHHHHHHHHHhhhccCCCcc------HHHHHHHHHHHHHcCC
Q 003047 359 ----------------ALFLK--------SQLEYARRNHRKAIKLLLALSNRTEMGIS------SMFNNNLGCIYYQLAK 408 (854)
Q Consensus 359 ----------------a~~ll--------a~ly~~~g~~~kAl~~l~kal~~~dp~~~------a~~~nnLG~iy~~~g~ 408 (854)
....+ +......|++++|+++|++++. .+|... +.++..+|.+|...|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~-~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS-ANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-HCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 11111 3344455799999999999999 677531 3367889999999999
Q ss_pred HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+++|+.+|++++.. .+. ..+++.+|.++...|++++|+.+|++++.++|+++.+|..+|.++.
T Consensus 259 ~~~A~~~~~~~~~~----------------~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 259 LLDAQVLLQESINL----------------HPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHHHH----------------CCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc----------------CCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 99999999999998 233 7899999999999999999999999999999999999999999988
Q ss_pred HHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcC
Q 003047 489 MALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLN 568 (854)
Q Consensus 489 ~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p 568 (854)
..+ .++.|..+|++++.+.|
T Consensus 322 ---~~~---------------------------------------------------------~~~~A~~~~~~a~~~~~ 341 (537)
T 3fp2_A 322 ---ILQ---------------------------------------------------------DYKNAKEDFQKAQSLNP 341 (537)
T ss_dssp ---HTT---------------------------------------------------------CHHHHHHHHHHHHHHCT
T ss_pred ---hcC---------------------------------------------------------CHHHHHHHHHHHHHhCC
Confidence 210 24779999999999988
Q ss_pred CCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhH
Q 003047 569 YPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCR 648 (854)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~ 648 (854)
....
T Consensus 342 ~~~~---------------------------------------------------------------------------- 345 (537)
T 3fp2_A 342 ENVY---------------------------------------------------------------------------- 345 (537)
T ss_dssp TCSH----------------------------------------------------------------------------
T ss_pred CCHH----------------------------------------------------------------------------
Confidence 7431
Q ss_pred HhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCC
Q 003047 649 RENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNF 727 (854)
Q Consensus 649 ~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~ 727 (854)
++..+|.++..+|++.+|+.++++++. .|.++..+..+|.+| ..+|++++|+.+|++++. .+.
T Consensus 346 ---------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~a~~--~~~ 409 (537)
T 3fp2_A 346 ---------PYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEIL-----TDRGDFDTAIKQYDIAKR--LEE 409 (537)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH-----HHTTCHHHHHHHHHHHHH--HHH
T ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-----HHhCCHHHHHHHHHHHHH--cCC
Confidence 255678899999999999999999997 888899998887755 578999999999999993 110
Q ss_pred CCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHc----------CCHHHH
Q 003047 728 DLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQ----------GEFERA 797 (854)
Q Consensus 728 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~----------g~~e~A 797 (854)
. .+..+ .....++++|.++..+ |++++|
T Consensus 410 ---------------------~--------------~~~~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A 447 (537)
T 3fp2_A 410 ---------------------V--------------QEKIH-------VGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447 (537)
T ss_dssp ---------------------H--------------CSSCS-------STTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred ---------------------c--------------chhhH-------HHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence 0 01000 0344568899999999 999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcccc
Q 003047 798 HHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLP 845 (854)
Q Consensus 798 ~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~ 845 (854)
+.++++++++.|+++.++..++.++.++|++++|+..+++ .+..|..+
T Consensus 448 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 448 IKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 9999999999999999999999999999999999999988 44445443
No 9
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.6e-27 Score=268.62 Aligned_cols=401 Identities=12% Similarity=-0.047 Sum_probs=259.7
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCc----hhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccc
Q 003047 144 DVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPID----ETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGC 219 (854)
Q Consensus 144 ~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~----e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~ 219 (854)
..+..|.++|.+|+.+|+|++|+++|++++++.+... +.....++.+++.+|..+|++++|+ .++++++.+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~---~~~~ka~~i~~ 125 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQ---IYVDKVKHVCE 125 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHH---HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHH---HHHHHHHHHhH
Confidence 3456777899999999999999999999988643221 1222335678899999999999998 67888877652
Q ss_pred ccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCC
Q 003047 220 VNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVG 299 (854)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (854)
..... .+.. ..
T Consensus 126 ~~~~~-------------------~~~~--------------------------------------------------~~ 136 (472)
T 4g1t_A 126 KFSSP-------------------YRIE--------------------------------------------------SP 136 (472)
T ss_dssp HSCCS-------------------SCCC--------------------------------------------------CH
T ss_pred hcccc-------------------cchh--------------------------------------------------hH
Confidence 21000 0000 00
Q ss_pred CccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH---hcCHHHH
Q 003047 300 LSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYA---RRNHRKA 376 (854)
Q Consensus 300 ~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~---~g~~~kA 376 (854)
.+++++|.+ .+++..+++++|++.+++++.++ |+++.++..+|.+++. .+++++|
T Consensus 137 ~~~~~~g~~--------------------~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~a 194 (472)
T 4g1t_A 137 ELDCEEGWT--------------------RLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNA 194 (472)
T ss_dssp HHHHHHHHH--------------------HHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHH--------------------HHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHH
Confidence 011222222 23334567899999999999999 9999999999998764 4677899
Q ss_pred HHHHHHhhhccCCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHH
Q 003047 377 IKLLLALSNRTEMGISSMFNNNLGCIYYQ----LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQ 452 (854)
Q Consensus 377 l~~l~kal~~~dp~~~a~~~nnLG~iy~~----~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ 452 (854)
++.|++++. .+|. .+.++.++|..+.. .|++++|+.+|++++.. .+....+++++|.+
T Consensus 195 l~~~~~al~-l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~----------------~~~~~~~~~~lg~~ 256 (472)
T 4g1t_A 195 IDPLRQAIR-LNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK----------------APGVTDVLRSAAKF 256 (472)
T ss_dssp HHHHHHHHH-HCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHH----------------CSSCHHHHHHHHHH
T ss_pred HHHHHHHhh-cCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh----------------CccHHHHHHHHHHH
Confidence 999999999 7884 67888889877665 46788999999999998 34567899999999
Q ss_pred HHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCC
Q 003047 453 YLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGH 532 (854)
Q Consensus 453 ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~ 532 (854)
|...|++++|+.+|++++++.|+++.+|.+||.|+........... ..... .
T Consensus 257 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~-------------------~~~~~---------~ 308 (472)
T 4g1t_A 257 YRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR-------------------ENGMY---------G 308 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC----------------------------------C
T ss_pred HHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHH-------------------HHHHH---------H
Confidence 9999999999999999999999999999999999874322210000 00000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccccccccccccccc
Q 003047 533 VDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKIS 612 (854)
Q Consensus 533 ~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (854)
........+.|..+|+.|+.+.|....
T Consensus 309 -------------~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------------------------------- 335 (472)
T 4g1t_A 309 -------------KRKLLELIGHAVAHLKKADEANDNLFR---------------------------------------- 335 (472)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHCTTTCC----------------------------------------
T ss_pred -------------HHHHHhhHHHHHHHHHHHhhcCCchhh----------------------------------------
Confidence 000011257899999999999888542
Q ss_pred ccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCChH-
Q 003047 613 VGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLEL-PDCSR- 690 (854)
Q Consensus 613 ~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~-p~~~~- 690 (854)
++..+|.++..+|++.+|+.+++++|.. ++...
T Consensus 336 ---------------------------------------------~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~ 370 (472)
T 4g1t_A 336 ---------------------------------------------VCSILASLHALADQYEEAEYYFQKEFSKELTPVAK 370 (472)
T ss_dssp ---------------------------------------------CHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHH
T ss_pred ---------------------------------------------hhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHH
Confidence 1346788999999999999999999974 44322
Q ss_pred --HHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhh--hhhHhhhhhhhhccCCCCCCCCCCCCCCC
Q 003047 691 --IYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCE--QWRVEKIIDCEELNGGPAAAKNPSPEDSR 766 (854)
Q Consensus 691 --~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~p~ 766 (854)
.+..+|.+ .+..+|++++|+.+|.+++. .+........... +.+.++-. .. .|.
T Consensus 371 ~~~~~~~~~~----~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~~~~l~~~~~~~l--~~--------------~p~ 428 (472)
T 4g1t_A 371 QLLHLRYGNF----QLYQMKCEDKAIHHFIEGVK--INQKSREKEKMKDKLQKIAKMRL--SK--------------NGA 428 (472)
T ss_dssp HHHHHHHHHH----HHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHHHHHHHHHHHHHH--HH--------------CC-
T ss_pred HHHHHHHHHH----HHHHCCCHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHHHHH--Hh--------------CCC
Confidence 23444433 34578999999999999994 2211100000000 00000000 00 122
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 003047 767 DTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEA 814 (854)
Q Consensus 767 ~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a 814 (854)
.+.++++||.+|..+|++++|+++|++||++.|..|.+
T Consensus 429 ----------~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 429 ----------DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp ----------CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred ----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 35667778888888888888888888887777665543
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=3.2e-25 Score=238.94 Aligned_cols=316 Identities=16% Similarity=0.106 Sum_probs=269.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+..+.+++..|++++|++.+++++..+ |+++.+++.+|.+++..|++++|+++|++++. .+|. ...++..+|.+
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIA-LKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCC-cchHHHHHHHH
Confidence 45567889999999999999999999999 99999999999999999999999999999999 6884 57899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHH------------HHHHHHCCCcHHHHHHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNC------------GLQYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nL------------G~~ll~~Gk~eeAl~~y~kAL 470 (854)
|..+|++++|+.+|++++...+... ....+++.+ |.++...|++++|+.+|++++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 147 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQ-------------EEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL 147 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCccc-------------ChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999999999999999999832000 234444444 899999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCC
Q 003047 471 LVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPK 550 (854)
Q Consensus 471 ~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~ 550 (854)
.+.|+++.+|..+|.++.. .+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~---~~-------------------------------------------------------- 168 (359)
T 3ieg_A 148 EVCVWDAELRELRAECFIK---EG-------------------------------------------------------- 168 (359)
T ss_dssp HHCTTCHHHHHHHHHHHHH---TT--------------------------------------------------------
T ss_pred HhCCCchHHHHHHHHHHHH---CC--------------------------------------------------------
Confidence 9999999999999999882 10
Q ss_pred CChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCC
Q 003047 551 LSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGG 630 (854)
Q Consensus 551 ~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~ 630 (854)
.++.|..+|++++.+.|...
T Consensus 169 -~~~~A~~~~~~~~~~~~~~~----------------------------------------------------------- 188 (359)
T 3ieg_A 169 -EPRKAISDLKAASKLKSDNT----------------------------------------------------------- 188 (359)
T ss_dssp -CHHHHHHHHHHHHTTCSCCH-----------------------------------------------------------
T ss_pred -CHHHHHHHHHHHHHhCCCCH-----------------------------------------------------------
Confidence 24679999999999877743
Q ss_pred chhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHH-------HHHHH
Q 003047 631 TSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGH-------IYAAE 702 (854)
Q Consensus 631 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~-------lY~ae 702 (854)
.++..+|.++...|++.+|+.++++++. .|+.+..+..+.. +..+.
T Consensus 189 --------------------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 242 (359)
T 3ieg_A 189 --------------------------EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 242 (359)
T ss_dssp --------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHH
Confidence 1256778899999999999999999997 7888877665543 35577
Q ss_pred HHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 003047 703 ALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYV 782 (854)
Q Consensus 703 Al~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~ 782 (854)
++...|++++|+.++++++. .+ |. .+ .....++.
T Consensus 243 ~~~~~~~~~~A~~~~~~~~~--~~--------------------------------------~~-----~~-~~~~~~~~ 276 (359)
T 3ieg_A 243 ELIRDGRYTDATSKYESVMK--TE--------------------------------------PS-----VA-EYTVRSKE 276 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HC--------------------------------------CS-----SH-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh--cC--------------------------------------CC-----ch-HHHHHHHH
Confidence 88899999999999999993 11 11 11 12456688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCccccc
Q 003047 783 NIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLPS 846 (854)
Q Consensus 783 NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~ 846 (854)
++|.++..+|++++|..++++++++.|+++.++..++.++...|++++|+..+++ .+..|.++.
T Consensus 277 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~ 341 (359)
T 3ieg_A 277 RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence 9999999999999999999999999999999999999999999999999999999 666666554
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=1.3e-24 Score=234.15 Aligned_cols=294 Identities=13% Similarity=0.070 Sum_probs=214.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCC---CccHHHHHHH-----
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEM---GISSMFNNNL----- 399 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp---~~~a~~~nnL----- 399 (854)
+.+|...|++++|++.+++++.+. |++..+++.+|.++...|++++|+++|++++. .+| . ...++..+
T Consensus 44 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~-~~~~~~~l~~~~~ 119 (359)
T 3ieg_A 44 ATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK-SNPSEQE-EKEAESQLVKADE 119 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-SCCCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHcCChHHHHHHHHHHHh-cCCcccC-hHHHHHHHHHHHH
Confidence 444445555555555555555555 66666666666666666666666666666666 445 3 23444444
Q ss_pred -------HHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 400 -------GCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 400 -------G~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
|.+|...|++++|+.+|++++.. .+....+++++|.++...|++++|+.+|++++.+
T Consensus 120 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 183 (359)
T 3ieg_A 120 MQRLRSQALDAFDGADYTAAITFLDKILEV----------------CVWDAELRELRAECFIKEGEPRKAISDLKAASKL 183 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 78899999999999999999987 3445688889999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 003047 473 FYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLS 552 (854)
Q Consensus 473 ~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~s 552 (854)
.|+++.+|..+|.++.. .+ .
T Consensus 184 ~~~~~~~~~~la~~~~~---~~---------------------------------------------------------~ 203 (359)
T 3ieg_A 184 KSDNTEAFYKISTLYYQ---LG---------------------------------------------------------D 203 (359)
T ss_dssp CSCCHHHHHHHHHHHHH---HT---------------------------------------------------------C
T ss_pred CCCCHHHHHHHHHHHHH---cC---------------------------------------------------------C
Confidence 99999999999988873 10 1
Q ss_pred hHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCch
Q 003047 553 MPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTS 632 (854)
Q Consensus 553 l~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~ 632 (854)
++.|..+|+.++.+.|.....+.
T Consensus 204 ~~~A~~~~~~a~~~~~~~~~~~~--------------------------------------------------------- 226 (359)
T 3ieg_A 204 HELSLSEVRECLKLDQDHKRCFA--------------------------------------------------------- 226 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHH---------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhCccchHHHH---------------------------------------------------------
Confidence 36689999999988888543110
Q ss_pred hHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHH
Q 003047 633 LEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPK 711 (854)
Q Consensus 633 ~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~ 711 (854)
.. ...........+|.++...|++.+|+.++++++. .|..+. ....+....+.++..+|+++
T Consensus 227 --~~--------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 227 --HY--------------KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE-YTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp --HH--------------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH-HHHHHHHHHHHHHHHTTCHH
T ss_pred --HH--------------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHHccCHH
Confidence 00 0000112345668889999999999999999998 666553 33344455666778899999
Q ss_pred HHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHc
Q 003047 712 EAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQ 791 (854)
Q Consensus 712 eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~ 791 (854)
+|+.++++++. .+ |. .+.+++++|.++..+
T Consensus 290 ~A~~~~~~~~~--~~--------------------------------------~~----------~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 290 EAIRICSEVLQ--ME--------------------------------------PD----------NVNALKDRAEAYLIE 319 (359)
T ss_dssp HHHHHHHHHHH--HC--------------------------------------TT----------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH--hC--------------------------------------cc----------cHHHHHHHHHHHHHc
Confidence 99999999993 11 32 467899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 003047 792 GEFERAHHFVTQALSILPRSTEATLTAIYVDLML 825 (854)
Q Consensus 792 g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~ 825 (854)
|++++|.+++++++++.|+++.+...+.-+...+
T Consensus 320 g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 320 EMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999988777766665443
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=4.2e-25 Score=248.08 Aligned_cols=359 Identities=12% Similarity=0.030 Sum_probs=283.6
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccccc
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVN 221 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~ 221 (854)
+|+++..++.+|.+|+..|+|++|+.+|+++++..+.. ..+++.++.+|...|++++|+ ..|++++.+.
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~l~~~~~~~g~~~~A~---~~~~~al~~~--- 90 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN-----YIAYYRRATVFLAMGKSKAAL---PDLTKVIQLK--- 90 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----HHHHHHHHHHHHHTTCHHHHH---HHHHHHHHHC---
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc-----HHHHHHHHHHHHHCCCHHHHH---HHHHHHHhcC---
Confidence 78899999999999999999999999999999854332 236788999999999999998 5678777553
Q ss_pred CCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCc
Q 003047 222 QVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLS 301 (854)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (854)
++.
T Consensus 91 -p~~---------------------------------------------------------------------------- 93 (450)
T 2y4t_A 91 -MDF---------------------------------------------------------------------------- 93 (450)
T ss_dssp -TTC----------------------------------------------------------------------------
T ss_pred -CCc----------------------------------------------------------------------------
Confidence 110
Q ss_pred cchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH---HHHHHH------------HHH
Q 003047 302 SNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS---LALFLK------------SQL 366 (854)
Q Consensus 302 ~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~---~a~~ll------------a~l 366 (854)
.......+.+|...|++++|++.+++++.+. |++. .++..+ |..
T Consensus 94 -------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 152 (450)
T 2y4t_A 94 -------------------TAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALN 152 (450)
T ss_dssp -------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0123335778889999999999999999999 9998 776555 777
Q ss_pred HHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHH
Q 003047 367 EYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLIT 446 (854)
Q Consensus 367 y~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~ 446 (854)
+...|++++|+++|++++. ..|. .+.+++++|.+|...|++++|+.+|++++.. .+....++
T Consensus 153 ~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------~~~~~~~~ 214 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILE-VCVW-DAELRELRAECFIKEGEPRKAISDLKAASKL----------------KNDNTEAF 214 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH----------------HCSCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHH
Confidence 9999999999999999999 6884 6789999999999999999999999999998 24467899
Q ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccC
Q 003047 447 YNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDG 526 (854)
Q Consensus 447 ~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~ 526 (854)
+++|.+|...|++++|+.+|++++.++|+++.+|..++.+........ +|..
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~------------------~~~~---------- 266 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE------------------SAEE---------- 266 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH------------------HHHH----------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH------------------HHHH----------
Confidence 999999999999999999999999999999999988743321000000 0000
Q ss_pred CcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccccccccc
Q 003047 527 FRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSS 606 (854)
Q Consensus 527 ~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (854)
+ .....++.|..+|+.++.+.|.....
T Consensus 267 -----~---------------~~~g~~~~A~~~~~~~l~~~p~~~~~--------------------------------- 293 (450)
T 2y4t_A 267 -----L---------------IRDGRYTDATSKYESVMKTEPSIAEY--------------------------------- 293 (450)
T ss_dssp -----H---------------HHHTCHHHHHHHHHHHHHHCCSSHHH---------------------------------
T ss_pred -----H---------------HHcCCHHHHHHHHHHHHhcCCcchHH---------------------------------
Confidence 0 00013578999999999998874310
Q ss_pred ccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-C
Q 003047 607 LDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-L 685 (854)
Q Consensus 607 ~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~ 685 (854)
...++.++|.++..+|++.+|+.++++++. .
T Consensus 294 ------------------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 294 ------------------------------------------------TVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 013467889999999999999999999997 8
Q ss_pred CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCC
Q 003047 686 PDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDS 765 (854)
Q Consensus 686 p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p 765 (854)
|+.+.++..+|.+ +..+|++++|+.++++++. .+ |
T Consensus 326 p~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~al~--~~--------------------------------------p 360 (450)
T 2y4t_A 326 PDNVNALKDRAEA-----YLIEEMYDEAIQDYETAQE--HN--------------------------------------E 360 (450)
T ss_dssp TTCHHHHHHHHHH-----HHHTTCHHHHHHHHHHHHT--TS--------------------------------------S
T ss_pred cccHHHHHHHHHH-----HHHhcCHHHHHHHHHHHHH--hC--------------------------------------c
Confidence 8889999888775 4579999999999999993 21 3
Q ss_pred CCCCCCCchhhhHHHHHHHHHH------------HHHcC-----CHHHHHHHHHH-HHhhCCCC
Q 003047 766 RDTMFPKPEEARGTLYVNIAAM------------FAMQG-----EFERAHHFVTQ-ALSILPRS 811 (854)
Q Consensus 766 ~~~~p~~~~~a~a~~~~NLa~~------------~~~~g-----~~e~A~~~~~~-Al~~~P~~ 811 (854)
. .+.++..|+.+ |...| +.+++.+.|++ ++...|+.
T Consensus 361 ~----------~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 361 N----------DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp S----------CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred c----------hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 2 35666777744 44445 67788999997 88888875
No 13
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=3.7e-24 Score=240.34 Aligned_cols=315 Identities=17% Similarity=0.111 Sum_probs=268.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHH
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGC 401 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~ 401 (854)
...+..+..|...|++++|++.+++++... |+++.+++.+|.+++..|++++|+++|++++. .+|. .+.+++.+|.
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ-LKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCC-cHHHHHHHHH
Confidence 355667889999999999999999999999 99999999999999999999999999999999 7884 5889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccH---HH------------HHHHHHHHHHCCCcHHHHHHH
Q 003047 402 IYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSL---LI------------TYNCGLQYLACGKPVLAARCF 466 (854)
Q Consensus 402 iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~---~~------------~~nLG~~ll~~Gk~eeAl~~y 466 (854)
+|..+|++++|+.+|++++...+ ... .+ ++++|.++...|++++|+.+|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNP----------------SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCC----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC----------------CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999732 222 33 455688899999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCC
Q 003047 467 QKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSD 546 (854)
Q Consensus 467 ~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~ 546 (854)
++++.+.|+++.+|..+|.++. ..+
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~---~~g---------------------------------------------------- 191 (450)
T 2y4t_A 167 DKILEVCVWDAELRELRAECFI---KEG---------------------------------------------------- 191 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHH---HTT----------------------------------------------------
T ss_pred HHHHHhCCCChHHHHHHHHHHH---HCC----------------------------------------------------
Confidence 9999999999999999999988 221
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCccc
Q 003047 547 GQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKD 626 (854)
Q Consensus 547 ~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~ 626 (854)
.++.|..+|++++.+.|...
T Consensus 192 -----~~~~A~~~~~~~~~~~~~~~------------------------------------------------------- 211 (450)
T 2y4t_A 192 -----EPRKAISDLKAASKLKNDNT------------------------------------------------------- 211 (450)
T ss_dssp -----CGGGGHHHHHHHHHHHCSCH-------------------------------------------------------
T ss_pred -----CHHHHHHHHHHHHHhCCCCH-------------------------------------------------------
Confidence 12449999999999887743
Q ss_pred ccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHH-------
Q 003047 627 QKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHI------- 698 (854)
Q Consensus 627 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~l------- 698 (854)
.++..+|.++...|++.+|+.++++++. .|+.+..+..++.+
T Consensus 212 ------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 261 (450)
T 2y4t_A 212 ------------------------------EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 261 (450)
T ss_dssp ------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence 1256778899999999999999999997 78888777666332
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhH
Q 003047 699 YAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARG 778 (854)
Q Consensus 699 Y~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a 778 (854)
-.+.++...|++++|+.+|++++. .+ |. .+ ....
T Consensus 262 ~~~~~~~~~g~~~~A~~~~~~~l~--~~--------------------------------------p~-----~~-~~~~ 295 (450)
T 2y4t_A 262 ESAEELIRDGRYTDATSKYESVMK--TE--------------------------------------PS-----IA-EYTV 295 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH--HC--------------------------------------CS-----SH-HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--cC--------------------------------------Cc-----ch-HHHH
Confidence 236678889999999999999993 11 11 11 1136
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcccccc
Q 003047 779 TLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLPSG 847 (854)
Q Consensus 779 ~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~~ 847 (854)
..++++|.++...|++++|+.++++++.+.|+++.++..++.++...|++++|+..+++ ....|.++..
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHH
Confidence 78999999999999999999999999999999999999999999999999999999999 6666766543
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=2.5e-24 Score=229.94 Aligned_cols=288 Identities=15% Similarity=0.097 Sum_probs=250.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
+.+.++..+...|++++|++.+++++..+ |++..++..++.+++..|++++|+.++++++. .+|. .+.++..+|.+
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~l~~~ 99 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVD-LYPS-NPVSWFAVGCY 99 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTT-STHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH-hCcC-CHHHHHHHHHH
Confidence 34557889999999999999999999999 99999999999999999999999999999999 7884 57789999999
Q ss_pred HHHcC-CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHH
Q 003047 403 YYQLA-KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWL 481 (854)
Q Consensus 403 y~~~g-~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~ 481 (854)
|..+| ++++|+.+|++++.. .+....+|+++|.++...|++++|+.+|++++.+.|+++.+|.
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 163 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTL----------------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPML 163 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTT----------------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHh----------------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHH
Confidence 99999 999999999999998 2345688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 003047 482 RLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLL 561 (854)
Q Consensus 482 ~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~ 561 (854)
.+|.++.. .+ .++.|..+|+
T Consensus 164 ~l~~~~~~---~~---------------------------------------------------------~~~~A~~~~~ 183 (330)
T 3hym_B 164 YIGLEYGL---TN---------------------------------------------------------NSKLAERFFS 183 (330)
T ss_dssp HHHHHHHH---TT---------------------------------------------------------CHHHHHHHHH
T ss_pred HHHHHHHH---Hh---------------------------------------------------------hHHHHHHHHH
Confidence 99998882 10 2477999999
Q ss_pred HHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhcc
Q 003047 562 NALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLS 641 (854)
Q Consensus 562 nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~ 641 (854)
+++.+.|...
T Consensus 184 ~al~~~~~~~---------------------------------------------------------------------- 193 (330)
T 3hym_B 184 QALSIAPEDP---------------------------------------------------------------------- 193 (330)
T ss_dssp HHHTTCTTCH----------------------------------------------------------------------
T ss_pred HHHHhCCCCh----------------------------------------------------------------------
Confidence 9999988743
Q ss_pred chhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC----------CCChHHHHHHHHHHHHHHHHhcCCHH
Q 003047 642 YYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLEL----------PDCSRIYIFLGHIYAAEALCLLNRPK 711 (854)
Q Consensus 642 ~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~----------p~~~~~~~~la~lY~aeAl~~lgr~~ 711 (854)
.++..+|.++..+|++.+|+.++++++.. |..+..+..+|.+| ..+|+++
T Consensus 194 ---------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~-----~~~g~~~ 253 (330)
T 3hym_B 194 ---------------FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC-----RKLKKYA 253 (330)
T ss_dssp ---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH-----HHTTCHH
T ss_pred ---------------HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH-----HHhcCHH
Confidence 12567789999999999999999999973 66678888888755 4789999
Q ss_pred HHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHc
Q 003047 712 EAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQ 791 (854)
Q Consensus 712 eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~ 791 (854)
+|+.++++++. .+ |. .+.+++++|.++..+
T Consensus 254 ~A~~~~~~a~~--~~--------------------------------------~~----------~~~~~~~la~~~~~~ 283 (330)
T 3hym_B 254 EALDYHRQALV--LI--------------------------------------PQ----------NASTYSAIGYIHSLM 283 (330)
T ss_dssp HHHHHHHHHHH--HS--------------------------------------TT----------CSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--hC--------------------------------------cc----------chHHHHHHHHHHHHh
Confidence 99999999993 11 22 467789999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HhcCCHHH
Q 003047 792 GEFERAHHFVTQALSILPRSTEATLTAIYVD-LMLGKSQE 830 (854)
Q Consensus 792 g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~-L~~G~~~e 830 (854)
|++++|.+++++++++.|+++.++..++.++ ...|+.+.
T Consensus 284 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 284 GNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp TCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC---
T ss_pred ccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchhc
Confidence 9999999999999999999999999888876 67777653
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=5.4e-24 Score=227.41 Aligned_cols=283 Identities=15% Similarity=0.051 Sum_probs=242.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 003047 28 ATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEG 107 (854)
Q Consensus 28 ~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 107 (854)
..++..|..++..|+|++|+++|+++++.+|.++.+++.++.+++..+ ++.+++..+.+.+..
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~------~~~~A~~~~~~~~~~----------- 85 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELN------KANELFYLSHKLVDL----------- 85 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHT------CHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhh------hHHHHHHHHHHHHHh-----------
Confidence 457889999999999999999999999999999999999998887554 344577767676631
Q ss_pred CCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhh-cHHHHHHHHHHhhhccCCCchhhHHH
Q 003047 108 GGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLH-EYAKALSVLEPLYQNIEPIDETTALQ 186 (854)
Q Consensus 108 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~-~y~~A~~~~e~l~~~~~~~~e~~~~~ 186 (854)
+|+++..++++|.++...| ++++|+++|+++++..+...+
T Consensus 86 ----------------------------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----- 126 (330)
T 3hym_B 86 ----------------------------------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP----- 126 (330)
T ss_dssp ----------------------------------CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTH-----
T ss_pred ----------------------------------CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHH-----
Confidence 4556779999999999999 999999999999996544333
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhh
Q 003047 187 ICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENA 266 (854)
Q Consensus 187 ~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (854)
+++.++.+|...|++++|+ ..+++++.+. ++.
T Consensus 127 ~~~~l~~~~~~~~~~~~A~---~~~~~a~~~~----~~~----------------------------------------- 158 (330)
T 3hym_B 127 AWIAYGHSFAVESEHDQAM---AAYFTAAQLM----KGC----------------------------------------- 158 (330)
T ss_dssp HHHHHHHHHHHHTCHHHHH---HHHHHHHHHT----TTC-----------------------------------------
T ss_pred HHHHHHHHHHHccCHHHHH---HHHHHHHHhc----ccc-----------------------------------------
Confidence 5788999999999999998 5667776553 100
Q ss_pred hhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 003047 267 LSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKL 346 (854)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~ 346 (854)
....+..+.+|...|++++|++.+++
T Consensus 159 ------------------------------------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 159 ------------------------------------------------------HLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp ------------------------------------------------------SHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------------------------------------------HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 00223357788899999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccC---------CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003047 347 AMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTE---------MGISSMFNNNLGCIYYQLAKYHTSSVFLS 417 (854)
Q Consensus 347 al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~d---------p~~~a~~~nnLG~iy~~~g~~~eAi~~f~ 417 (854)
++... |+++.+++.+|.++...|++++|+++|++++.. . | ..+.++.++|.+|..+|++++|+.+|+
T Consensus 185 al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 185 ALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK-IKAIGNEVTVD-KWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTTSCSCTTT-TCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH-hhhcccccccc-HHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999 999999999999999999999999999999983 2 4 345789999999999999999999999
Q ss_pred HHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 418 KALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 418 kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+++.. .+....+++++|.++...|++++|+.+|+++++++|+++.+|..++.|+.
T Consensus 261 ~a~~~----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 315 (330)
T 3hym_B 261 QALVL----------------IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE 315 (330)
T ss_dssp HHHHH----------------STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred HHHhh----------------CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence 99998 24456899999999999999999999999999999999999999999885
No 16
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=2.6e-25 Score=252.11 Aligned_cols=292 Identities=14% Similarity=0.020 Sum_probs=211.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHh
Q 003047 29 TLAKEAALYFQSRKFDECLDLLKQLLDK---------KPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELAR 99 (854)
Q Consensus 29 ~l~~~a~~~~~~g~y~~Al~~l~~~l~~---------~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 99 (854)
.+-.-|..++..|+|++|++.|++++++ +|....+++|+|.+|+..+++.+ ++..+.+++.....
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~------A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSD------VQIYVDKVKHVCEK 126 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHH------HHHHHHHHHHHhHh
Confidence 3445799999999999999999999985 56678899999999998776444 44444444421100
Q ss_pred hhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHh--hcHHHHHHHHHHhhhccC
Q 003047 100 ATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHL--HEYAKALSVLEPLYQNIE 177 (854)
Q Consensus 100 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~--~~y~~A~~~~e~l~~~~~ 177 (854)
.. . ..+++.+..+.++|.++... ++|++|+++|+++++..+
T Consensus 127 --~~--~---------------------------------~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p 169 (472)
T 4g1t_A 127 --FS--S---------------------------------PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP 169 (472)
T ss_dssp --SC--C---------------------------------SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred --cc--c---------------------------------ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence 00 0 01345667888998777654 589999999999999644
Q ss_pred CCchhhHHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccc
Q 003047 178 PIDETTALQICLLLLDVALA---CHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNS 254 (854)
Q Consensus 178 ~~~e~~~~~~~l~l~~vy~~---~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (854)
...+ +...++.++.. .+++++|+ ..|++++.+. ++.
T Consensus 170 ~~~~-----~~~~~~~~~~~l~~~~~~~~al---~~~~~al~l~----p~~----------------------------- 208 (472)
T 4g1t_A 170 KNPE-----FTSGLAIASYRLDNWPPSQNAI---DPLRQAIRLN----PDN----------------------------- 208 (472)
T ss_dssp TCHH-----HHHHHHHHHHHHHHSCCCCCTH---HHHHHHHHHC----SSC-----------------------------
T ss_pred CCHH-----HHHHHHHHHHHhcCchHHHHHH---HHHHHHhhcC----Ccc-----------------------------
Confidence 4333 34555655444 46667776 6788888764 111
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHh
Q 003047 255 DLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLT 334 (854)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~ 334 (854)
.. +++++|.+ ...++...
T Consensus 209 -~~-------------------------------------------~~~~l~~~------------------~~~~~~~~ 226 (472)
T 4g1t_A 209 -QY-------------------------------------------LKVLLALK------------------LHKMREEG 226 (472)
T ss_dssp -HH-------------------------------------------HHHHHHHH------------------HHHCC---
T ss_pred -hH-------------------------------------------HHHHHHHH------------------HHHHHhhh
Confidence 00 01112222 23344456
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc--------
Q 003047 335 RNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL-------- 406 (854)
Q Consensus 335 ~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~-------- 406 (854)
+++++|.+.+++++.++ |+++.+++.+|.+|...|++++|++.|++++. ..|. .+.+++++|.+|..+
T Consensus 227 ~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~y~~~~~~~~~~~ 302 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALE-YIPN-NAYLHCQIGCCYRAKVFQVMNLR 302 (472)
T ss_dssp ---CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTT-CHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH-hCCC-hHHHHHHHHHHHHHHHHHhhhHH
Confidence 78889999999999999 99999999999999999999999999999999 7884 688999999999754
Q ss_pred -----------CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC
Q 003047 407 -----------AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 407 -----------g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~ 475 (854)
+.+++|+.+|++++... +....+++++|.++...|++++|+.+|++++.+.|+
T Consensus 303 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~----------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~ 366 (472)
T 4g1t_A 303 ENGMYGKRKLLELIGHAVAHLKKADEAN----------------DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366 (472)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHC----------------TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhcC----------------CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 34678888888888872 334567889999999999999999999999999998
Q ss_pred CHH---HHHHHHHH
Q 003047 476 QPL---LWLRLAEC 486 (854)
Q Consensus 476 ~~~---aw~~La~~ 486 (854)
+.. +++++|.+
T Consensus 367 ~~~~~~~~~~~~~~ 380 (472)
T 4g1t_A 367 PVAKQLLHLRYGNF 380 (472)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH
Confidence 754 35555544
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.92 E-value=9e-24 Score=230.39 Aligned_cols=305 Identities=13% Similarity=-0.012 Sum_probs=239.7
Q ss_pred HHHHhcCHHHHHH-HHHHHHHhcCCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHH
Q 003047 330 FLLLTRNLKHAKR-EVKLAMNIARGKDSS----LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYY 404 (854)
Q Consensus 330 lyl~~~~~~~A~~-elk~al~~~~~P~~~----~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~ 404 (854)
+|...+++++|++ .+++++.+. |+++ ..++.+|..++..|++++|+++|++++. .+|. .+.+++++|.+|.
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~l~~~~~ 109 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFE--EENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ-QDPK-HMEAWQYLGTTQA 109 (368)
T ss_dssp ------------CHHHHCCCCCC--SSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH-SCTT-CHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcC--CCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHH
Confidence 4556789999999 999999998 8874 5689999999999999999999999999 7884 6789999999999
Q ss_pred HcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003047 405 QLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLA 484 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La 484 (854)
.+|++++|+.+|++++.. .+....+++++|.++...|++++|+.+|++++.+.|+++.+|..++
T Consensus 110 ~~g~~~~A~~~~~~al~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 173 (368)
T 1fch_A 110 ENEQELLAISALRRCLEL----------------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE 173 (368)
T ss_dssp HTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---
T ss_pred HCcCHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 999999999999999998 3456789999999999999999999999999999999998887665
Q ss_pred HHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 003047 485 ECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNAL 564 (854)
Q Consensus 485 ~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL 564 (854)
.+... . .. ......+| .......++.|+.+|++++
T Consensus 174 ~~~~~---~---~~--------~~~~~~~~-------------------------------~~~~~~~~~~A~~~~~~a~ 208 (368)
T 1fch_A 174 EGAGG---A---GL--------GPSKRILG-------------------------------SLLSDSLFLEVKELFLAAV 208 (368)
T ss_dssp --------------------------CTTH-------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhh---h---cc--------cHHHHHHH-------------------------------HHhhcccHHHHHHHHHHHH
Confidence 43210 0 00 00000000 0001124688999999999
Q ss_pred hhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchh
Q 003047 565 HLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYE 644 (854)
Q Consensus 565 ~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~ 644 (854)
.+.|.....
T Consensus 209 ~~~p~~~~~----------------------------------------------------------------------- 217 (368)
T 1fch_A 209 RLDPTSIDP----------------------------------------------------------------------- 217 (368)
T ss_dssp HHSTTSCCH-----------------------------------------------------------------------
T ss_pred HhCcCcccH-----------------------------------------------------------------------
Confidence 998873210
Q ss_pred hHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcC
Q 003047 645 DVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSG 723 (854)
Q Consensus 645 ~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~ 723 (854)
.++..+|.++...|++.+|+.++++++. .|+.+..+..+|.+|. .+|++++|+.+|++++.
T Consensus 218 ------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~al~- 279 (368)
T 1fch_A 218 ------------DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-----NGNQSEEAVAAYRRALE- 279 (368)
T ss_dssp ------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHH-
T ss_pred ------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHH-
Confidence 2356789999999999999999999997 8888999988887554 68999999999999993
Q ss_pred CCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003047 724 GDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQ 803 (854)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~ 803 (854)
.+ |. .+.+++++|.++..+|++++|..++++
T Consensus 280 -~~--------------------------------------~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 310 (368)
T 1fch_A 280 -LQ--------------------------------------PG----------YIRSRYNLGISCINLGAHREAVEHFLE 310 (368)
T ss_dssp -HC--------------------------------------TT----------CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred -hC--------------------------------------CC----------cHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 11 32 467899999999999999999999999
Q ss_pred HHhhCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 804 ALSILPRS-----------TEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 804 Al~~~P~~-----------~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
++.+.|+. +.++..++.++.++|++++|..++++
T Consensus 311 al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 311 ALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 99999988 88999999999999999999999875
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.92 E-value=3.4e-21 Score=221.76 Aligned_cols=394 Identities=14% Similarity=0.085 Sum_probs=304.9
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccCCCCCCCc
Q 003047 45 ECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGV 124 (854)
Q Consensus 45 ~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 124 (854)
.+++.++++. .++++.+++.||.+++.- .....++.+++..++++.+
T Consensus 25 ~~~~~~~~~a--~~g~~~a~~~lg~~y~~g--~~~~~~~~~A~~~~~~a~~----------------------------- 71 (490)
T 2xm6_A 25 VNLEQLKQKA--ESGEAKAQLELGYRYFQG--NETTKDLTQAMDWFRRAAE----------------------------- 71 (490)
T ss_dssp CCHHHHHHHH--HTTCHHHHHHHHHHHHHT--SSSCCCHHHHHHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHH--HCCCHHHHHHHHHHHHcC--CCCCcCHHHHHHHHHHHHH-----------------------------
Confidence 3455666554 478999999999776642 2234566778888888873
Q ss_pred ccccccccccCCcccccchhhHHHHHHHHHHHHH----hhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHH---
Q 003047 125 VGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFH----LHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALA--- 197 (854)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~----~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~--- 197 (854)
..++.+++++|.+|.. .+++++|+++|+++... .+. .+++.|+.+|..
T Consensus 72 ------------------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~---~a~~~Lg~~y~~g~g 126 (490)
T 2xm6_A 72 ------------------QGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GLP---QAQQNLGVMYHEGNG 126 (490)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCH---HHHHHHHHHHHHTSS
T ss_pred ------------------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCH---HHHHHHHHHHHcCCC
Confidence 1245689999999999 99999999999999873 222 357889999999
Q ss_pred -ccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhh
Q 003047 198 -CHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETL 276 (854)
Q Consensus 198 -~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (854)
.+++++|+ .+|+++.... + .
T Consensus 127 ~~~~~~~A~---~~~~~a~~~~-----~-------------------------------~-------------------- 147 (490)
T 2xm6_A 127 VKVDKAESV---KWFRLAAEQG-----R-------------------------------D-------------------- 147 (490)
T ss_dssp SCCCHHHHH---HHHHHHHHTT-----C-------------------------------H--------------------
T ss_pred CCCCHHHHH---HHHHHHHHCC-----C-------------------------------H--------------------
Confidence 89999998 5778775431 0 0
Q ss_pred hhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhcC
Q 003047 277 EDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLL----TRNLKHAKREVKLAMNIAR 352 (854)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~----~~~~~~A~~elk~al~~~~ 352 (854)
.+..+||. +|.. .+++++|++.++++++..
T Consensus 148 -----------------------~a~~~Lg~----------------------~y~~g~g~~~d~~~A~~~~~~a~~~~- 181 (490)
T 2xm6_A 148 -----------------------SGQQSMGD----------------------AYFEGDGVTRDYVMAREWYSKAAEQG- 181 (490)
T ss_dssp -----------------------HHHHHHHH----------------------HHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred -----------------------HHHHHHHH----------------------HHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 01222333 3443 678999999999998764
Q ss_pred CCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhch
Q 003047 353 GKDSSLALFLKSQLEYA----RRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ----LAKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 353 ~P~~~~a~~lla~ly~~----~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~----~g~~~eAi~~f~kAL~~~~ 424 (854)
++.+++.+|.+|.. .+++++|+++|+++.. .. ++.++++||.+|.. .+++++|+.+|++++..
T Consensus 182 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-- 252 (490)
T 2xm6_A 182 ---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT-SG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-- 252 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--
T ss_pred ---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence 79999999999999 9999999999999998 32 36788899999998 89999999999999886
Q ss_pred hcccCCccccccccCCccHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCC
Q 003047 425 SLRKDKPLKLLTFSQDKSLLITYNCGLQYLA----CGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGR 500 (854)
Q Consensus 425 ~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~----~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~ 500 (854)
....+++++|.+|.. .+++++|+.+|+++++. +++.++++||.++. ... .
T Consensus 253 ----------------~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~---~~~---~-- 306 (490)
T 2xm6_A 253 ----------------GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYD---KGA---E-- 306 (490)
T ss_dssp ----------------TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHH---HCB---T--
T ss_pred ----------------CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH---cCC---C--
Confidence 246789999999999 99999999999999765 78999999998887 210 0
Q ss_pred CCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCC
Q 003047 501 SLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLP 580 (854)
Q Consensus 501 ~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~ 580 (854)
| . ...++.|..+|++|+...+.
T Consensus 307 -------------g-----------------~-----------------~~~~~~A~~~~~~a~~~~~~----------- 328 (490)
T 2xm6_A 307 -------------G-----------------V-----------------AKNREQAISWYTKSAEQGDA----------- 328 (490)
T ss_dssp -------------T-----------------B-----------------CCCHHHHHHHHHHHHHTTCH-----------
T ss_pred -------------C-----------------C-----------------cCCHHHHHHHHHHHHhcCCH-----------
Confidence 0 0 01358899999999864211
Q ss_pred CCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHH
Q 003047 581 SNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLA 660 (854)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~ 660 (854)
.++.
T Consensus 329 ----------------------------------------------------------------------------~a~~ 332 (490)
T 2xm6_A 329 ----------------------------------------------------------------------------TAQA 332 (490)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 1245
Q ss_pred HHHHHHHHcC---CHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhh
Q 003047 661 NLAYVELEME---NPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCE 737 (854)
Q Consensus 661 ~la~v~l~lg---~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~ 737 (854)
+||.++...| ++.+|+.+++++++. .++.++..||.+|..- .--.+++++|+.+|+++.. .
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g-~g~~~~~~~A~~~~~~A~~--~------------ 396 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAK-GEKAAQFNLGNALLQG-KGVKKDEQQAAIWMRKAAE--Q------------ 396 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHT-SSSCCCHHHHHHHHHHHHH--T------------
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHHh--C------------
Confidence 6788888867 899999999999987 5688999999877520 0006899999999999992 1
Q ss_pred hhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC---
Q 003047 738 QWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAM----QGEFERAHHFVTQALSILPR--- 810 (854)
Q Consensus 738 ~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~----~g~~e~A~~~~~~Al~~~P~--- 810 (854)
. .+.++++||.+|.. .+++++|..+|++|++..|+
T Consensus 397 ----------------------------~----------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~ 438 (490)
T 2xm6_A 397 ----------------------------G----------LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFG 438 (490)
T ss_dssp ----------------------------T----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHH
T ss_pred ----------------------------C----------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcC
Confidence 0 35678999999999 89999999999999999854
Q ss_pred CHHHHHHHHHHHHh
Q 003047 811 STEATLTAIYVDLM 824 (854)
Q Consensus 811 ~~~a~~l~~y~~L~ 824 (854)
++.+...++.++..
T Consensus 439 ~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 439 TENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHTTSCHH
T ss_pred CHHHHHHHHhcCHh
Confidence 77777777666443
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.91 E-value=5.7e-23 Score=225.10 Aligned_cols=275 Identities=15% Similarity=0.013 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccccc
Q 003047 357 SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLT 436 (854)
Q Consensus 357 ~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~ 436 (854)
...++.+|..++..|++++|+++|++++. .+|. .+.+++++|.+|..+|++++|+.+|++++..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------- 128 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAIL-QDPG-DAEAWQFLGITQAENENEQAAIVALQRCLEL-------------- 128 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------
Confidence 44599999999999999999999999999 7884 6889999999999999999999999999998
Q ss_pred ccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeecccc
Q 003047 437 FSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKG 516 (854)
Q Consensus 437 ~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g 516 (854)
.+....+++++|.+|...|++++|+.+|++++.+.|+++.+|..++........ +|.
T Consensus 129 --~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--------------------l~~- 185 (365)
T 4eqf_A 129 --QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRR--------------------MSK- 185 (365)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------------------------
T ss_pred --CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHH--------------------HHH-
Confidence 345678999999999999999999999999999999998888877411110000 000
Q ss_pred ccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccc
Q 003047 517 KWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASS 596 (854)
Q Consensus 517 ~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (854)
.......++.|..+|++++.+.|.....
T Consensus 186 -----------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~----------------------- 213 (365)
T 4eqf_A 186 -----------------------------SPVDSSVLEGVKELYLEAAHQNGDMIDP----------------------- 213 (365)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHHHHSCSSCCH-----------------------
T ss_pred -----------------------------HHhhhhhHHHHHHHHHHHHHhCcCccCH-----------------------
Confidence 0011124689999999999998873210
Q ss_pred ccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHH
Q 003047 597 KNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKAL 676 (854)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al 676 (854)
.++..+|.++..+|++.+|+
T Consensus 214 ------------------------------------------------------------~~~~~l~~~~~~~g~~~~A~ 233 (365)
T 4eqf_A 214 ------------------------------------------------------------DLQTGLGVLFHLSGEFNRAI 233 (365)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHHHTCHHHHH
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHCCCHHHHH
Confidence 23567899999999999999
Q ss_pred HHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCC
Q 003047 677 AAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPA 755 (854)
Q Consensus 677 ~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 755 (854)
.++++++. .|..+..+..+|.+| ..+|++++|+.+|++++. .+
T Consensus 234 ~~~~~al~~~p~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~al~--~~----------------------------- 277 (365)
T 4eqf_A 234 DAFNAALTVRPEDYSLWNRLGATL-----ANGDRSEEAVEAYTRALE--IQ----------------------------- 277 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHH--HC-----------------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHh--cC-----------------------------
Confidence 99999997 888999998888755 479999999999999993 11
Q ss_pred CCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHH
Q 003047 756 AAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRS------------TEATLTAIYVDL 823 (854)
Q Consensus 756 ~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~------------~~a~~l~~y~~L 823 (854)
|. .+.++++||.++..+|++++|..++++++++.|+. ..++..++.++.
T Consensus 278 ---------p~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (365)
T 4eqf_A 278 ---------PG----------FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALS 338 (365)
T ss_dssp ---------TT----------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHH
T ss_pred ---------CC----------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHH
Confidence 32 47889999999999999999999999999999873 467778888888
Q ss_pred hcCCHHHHHHHHHh
Q 003047 824 MLGKSQEALAKLKY 837 (854)
Q Consensus 824 ~~G~~~eA~~~lk~ 837 (854)
.+|+.+.+..+.++
T Consensus 339 ~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 339 LMDQPELFQAANLG 352 (365)
T ss_dssp HHTCHHHHHHHHTT
T ss_pred HcCcHHHHHHHHHh
Confidence 99999999998877
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.90 E-value=7.2e-20 Score=210.69 Aligned_cols=403 Identities=14% Similarity=0.073 Sum_probs=310.5
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhc
Q 003047 27 TATLAKEAALYFQ----SRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATG 102 (854)
Q Consensus 27 ~~~l~~~a~~~~~----~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 102 (854)
+..++.-|..++. .+++++|++.|+++.+. +++.++++||.+++.- ..-+.++.+++..++++..
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g--~g~~~~~~~A~~~~~~a~~------- 107 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNG--EGVPQDYAQAVIWYKKAAL------- 107 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT--SSSCCCHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC--CCCCCCHHHHHHHHHHHHH-------
Confidence 4567778888888 99999999999999986 7899999999877652 2234556778888888873
Q ss_pred ccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHH----hhcHHHHHHHHHHhhhccCC
Q 003047 103 EQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFH----LHEYAKALSVLEPLYQNIEP 178 (854)
Q Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~----~~~y~~A~~~~e~l~~~~~~ 178 (854)
..++..++++|.+|.. .+++++|+++|+++...
T Consensus 108 ----------------------------------------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--- 144 (490)
T 2xm6_A 108 ----------------------------------------KGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--- 144 (490)
T ss_dssp ----------------------------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred ----------------------------------------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---
Confidence 1245689999999999 89999999999999873
Q ss_pred CchhhHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccc
Q 003047 179 IDETTALQICLLLLDVALA----CHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNS 254 (854)
Q Consensus 179 ~~e~~~~~~~l~l~~vy~~----~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (854)
++. .+++.|+.+|.. .+++++|+ .+|+++.... +
T Consensus 145 -~~~---~a~~~Lg~~y~~g~g~~~d~~~A~---~~~~~a~~~~-----~------------------------------ 182 (490)
T 2xm6_A 145 -GRD---SGQQSMGDAYFEGDGVTRDYVMAR---EWYSKAAEQG-----N------------------------------ 182 (490)
T ss_dssp -TCH---HHHHHHHHHHHHTSSSCCCHHHHH---HHHHHHHHTT-----C------------------------------
T ss_pred -CCH---HHHHHHHHHHHcCCCCCCCHHHHH---HHHHHHHHCC-----C------------------------------
Confidence 222 358889999998 88999998 5778776431 0
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHH-
Q 003047 255 DLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLL- 333 (854)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~- 333 (854)
. .+..+| +.+|..
T Consensus 183 -~-------------------------------------------~a~~~L----------------------g~~y~~g 196 (490)
T 2xm6_A 183 -V-------------------------------------------WSCNQL----------------------GYMYSRG 196 (490)
T ss_dssp -H-------------------------------------------HHHHHH----------------------HHHHHHT
T ss_pred -H-------------------------------------------HHHHHH----------------------HHHHhcC
Confidence 0 011222 334444
Q ss_pred ---hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH-
Q 003047 334 ---TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYA----RRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ- 405 (854)
Q Consensus 334 ---~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~----~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~- 405 (854)
.++.++|++.++++++.. ++.+++.+|.+|.. .+++++|+++|++++. .. .+.++++||.+|..
T Consensus 197 ~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 197 LGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE-QG---NSIAQFRLGYILEQG 268 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT-TT---CHHHHHHHHHHHHHT
T ss_pred CCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHCC
Confidence 688999999999998654 78999999999997 8999999999999988 32 36788899999999
Q ss_pred ---cCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHC-----CCcHHHHHHHHHHHHhcCCCH
Q 003047 406 ---LAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC-----GKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 406 ---~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~-----Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
.+++++|+.+|++++.. ....+++++|.+|... +++++|+.+|+++++. +++
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~------------------~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~ 328 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQ------------------GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDA 328 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTT------------------TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCCCCHHHHHHHHHHHHHc------------------CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCH
Confidence 99999999999999875 2467899999999998 9999999999999876 678
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHH
Q 003047 478 LLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLAR 557 (854)
Q Consensus 478 ~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~ 557 (854)
.+|++||.++.. .+.. ..++.|+
T Consensus 329 ~a~~~lg~~y~~---~g~~------------------------------------------------------~~~~~A~ 351 (490)
T 2xm6_A 329 TAQANLGAIYFR---LGSE------------------------------------------------------EEHKKAV 351 (490)
T ss_dssp HHHHHHHHHHHH---SCCH------------------------------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHh---CCCc------------------------------------------------------ccHHHHH
Confidence 999999998872 1100 0247799
Q ss_pred HHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHh
Q 003047 558 QCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQ 637 (854)
Q Consensus 558 ~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~ 637 (854)
.+|++|+.. .++
T Consensus 352 ~~~~~a~~~--~~~------------------------------------------------------------------ 363 (490)
T 2xm6_A 352 EWFRKAAAK--GEK------------------------------------------------------------------ 363 (490)
T ss_dssp HHHHHHHHT--TCH------------------------------------------------------------------
T ss_pred HHHHHHHHC--CCH------------------------------------------------------------------
Confidence 999999865 111
Q ss_pred hhccchhhHhHHhhHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHH
Q 003047 638 NSLSYYEDVCRRENQMIKQALLANLAYVELE----MENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEA 713 (854)
Q Consensus 638 ~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~----lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eA 713 (854)
.++.+||.++.. .+|+.+|+.+++++++.. ++.++..||.+|..- .--.+++++|
T Consensus 364 -------------------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~Lg~~y~~g-~g~~~d~~~A 422 (490)
T 2xm6_A 364 -------------------AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-LSAAQVQLGEIYYYG-LGVERDYVQA 422 (490)
T ss_dssp -------------------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHT-SSSCCCHHHH
T ss_pred -------------------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcC-CCCCCCHHHH
Confidence 235678999999 899999999999999864 588999999877620 0016999999
Q ss_pred HHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCC
Q 003047 714 AEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGE 793 (854)
Q Consensus 714 l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~ 793 (854)
+.+|++++. .+ |. .|. .+.+.++||.++.. +
T Consensus 423 ~~~~~~A~~--~~--------------------------------------~~-----~~~--~~~a~~~l~~~~~~--~ 453 (490)
T 2xm6_A 423 WAWFDTAST--ND--------------------------------------MN-----LFG--TENRNITEKKLTAK--Q 453 (490)
T ss_dssp HHHHHHHHH--HH--------------------------------------CC-----HHH--HHHHHHHHTTSCHH--H
T ss_pred HHHHHHHHH--CC--------------------------------------CC-----CcC--CHHHHHHHHhcCHh--H
Confidence 999999993 11 00 011 46677889988775 4
Q ss_pred HHHHHHHHHHHHhhCCCCHHH
Q 003047 794 FERAHHFVTQALSILPRSTEA 814 (854)
Q Consensus 794 ~e~A~~~~~~Al~~~P~~~~a 814 (854)
.++|.+..++.++..|+...+
T Consensus 454 ~~~a~~~a~~~~~~~~~~~~~ 474 (490)
T 2xm6_A 454 LQQAELLSQQYIEKYAPEAWA 474 (490)
T ss_dssp HHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666655655433
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=2.6e-22 Score=218.74 Aligned_cols=294 Identities=13% Similarity=0.026 Sum_probs=223.2
Q ss_pred HHHHcCCHHHHHH-HHHHHHhcCCCCH----HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 003047 36 LYFQSRKFDECLD-LLKQLLDKKPDDP----KILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGN 110 (854)
Q Consensus 36 ~~~~~g~y~~Al~-~l~~~l~~~~~~~----~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 110 (854)
.+...|+|++|++ .|++++.+.|.++ .+++++|.+++..+ ++.+++..+.+.++
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~A~~~~~~al~--------------- 92 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEG------DLPNAVLLFEAAVQ--------------- 92 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTT------CHHHHHHHHHHHHH---------------
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCC------CHHHHHHHHHHHHH---------------
Confidence 4567799999999 9999999988874 66999998887554 35567777777773
Q ss_pred CCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHH
Q 003047 111 IGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLL 190 (854)
Q Consensus 111 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~ 190 (854)
. +|+++..++++|.+|...|+|++|+++|+++++..+... .+++.
T Consensus 93 -----------------------------~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~~ 137 (368)
T 1fch_A 93 -----------------------------Q-DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ-----TALMA 137 (368)
T ss_dssp -----------------------------S-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHH
T ss_pred -----------------------------h-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCH-----HHHHH
Confidence 1 456778999999999999999999999999999654322 25788
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhh
Q 003047 191 LLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRT 270 (854)
Q Consensus 191 l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (854)
++.+|...|++++|+ ..+++++.+. ++. . .. +..
T Consensus 138 l~~~~~~~g~~~~A~---~~~~~~~~~~----~~~--------------------~--------~~---~~~-------- 171 (368)
T 1fch_A 138 LAVSFTNESLQRQAC---EILRDWLRYT----PAY--------------------A--------HL---VTP-------- 171 (368)
T ss_dssp HHHHHHHTTCHHHHH---HHHHHHHHTS----TTT--------------------G--------GG---CC---------
T ss_pred HHHHHHHcCCHHHHH---HHHHHHHHhC----cCc--------------------H--------HH---HHH--------
Confidence 999999999999998 5678777654 111 0 00 000
Q ss_pred hhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 003047 271 LSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNI 350 (854)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~ 350 (854)
.+ .. . ... ..+.+...+ ..++ ..|++++|++.+++++.+
T Consensus 172 ~~-------~~------~-~~~----~~~~~~~~~----------------------~~~~-~~~~~~~A~~~~~~a~~~ 210 (368)
T 1fch_A 172 AE-------EG------A-GGA----GLGPSKRIL----------------------GSLL-SDSLFLEVKELFLAAVRL 210 (368)
T ss_dssp --------------------------------CTT----------------------HHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HH-------HH------h-hhh----cccHHHHHH----------------------HHHh-hcccHHHHHHHHHHHHHh
Confidence 00 00 0 000 000011111 2233 678999999999999999
Q ss_pred cCCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhccc
Q 003047 351 ARGKD--SSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRK 428 (854)
Q Consensus 351 ~~~P~--~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~ 428 (854)
. |+ ++.+++.+|.++...|++++|+++|++++. .+|. .+.+++++|.+|..+|++++|+.+|++++..
T Consensus 211 ~--p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------ 280 (368)
T 1fch_A 211 D--PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS-VRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALEL------ 280 (368)
T ss_dssp S--TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------
T ss_pred C--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 9 99 899999999999999999999999999999 6884 5789999999999999999999999999998
Q ss_pred CCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHHHh
Q 003047 429 DKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ-----------PLLWLRLAECCLMALE 492 (854)
Q Consensus 429 ~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~-----------~~aw~~La~~~i~~~~ 492 (854)
.+....+++++|.+|...|++++|+.+|++++.+.|++ +.+|..||.++...++
T Consensus 281 ----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 281 ----------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp ----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred ----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 34567899999999999999999999999999999999 8999999999995444
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=4.5e-22 Score=217.99 Aligned_cols=286 Identities=14% Similarity=0.032 Sum_probs=221.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHH
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIY 403 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy 403 (854)
.+.++.+|...|++++|++.+++++..+ |+++.+++.+|.++...|++++|+++|++++. .+|. .+.+++++|.+|
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~l~~~~ 143 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLE-LQPN-NLKALMALAVSY 143 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHH
Confidence 3456888899999999999999999999 99999999999999999999999999999999 7884 688999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC--CHHHHH
Q 003047 404 YQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK--QPLLWL 481 (854)
Q Consensus 404 ~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~--~~~aw~ 481 (854)
..+|++++|+.+|++++...+...... .........+.++|.++...|++++|+.+|++++.+.|+ ++.+|.
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 217 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLV------KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT 217 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHH------hhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence 999999999999999999854321000 000012345567799999999999999999999999999 999999
Q ss_pred HHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 003047 482 RLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLL 561 (854)
Q Consensus 482 ~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~ 561 (854)
.+|.++.. .+ .++.|+.+|+
T Consensus 218 ~l~~~~~~---~g---------------------------------------------------------~~~~A~~~~~ 237 (365)
T 4eqf_A 218 GLGVLFHL---SG---------------------------------------------------------EFNRAIDAFN 237 (365)
T ss_dssp HHHHHHHH---HT---------------------------------------------------------CHHHHHHHHH
T ss_pred HHHHHHHH---CC---------------------------------------------------------CHHHHHHHHH
Confidence 99999883 10 2467999999
Q ss_pred HHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhcc
Q 003047 562 NALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLS 641 (854)
Q Consensus 562 nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~ 641 (854)
+++.+.|...
T Consensus 238 ~al~~~p~~~---------------------------------------------------------------------- 247 (365)
T 4eqf_A 238 AALTVRPEDY---------------------------------------------------------------------- 247 (365)
T ss_dssp HHHHHCTTCH----------------------------------------------------------------------
T ss_pred HHHHhCCCCH----------------------------------------------------------------------
Confidence 9999988743
Q ss_pred chhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 003047 642 YYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMY 720 (854)
Q Consensus 642 ~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~ 720 (854)
.++..+|.++..+|++.+|+.++++++. .|..+.++..+|.+|. .+|++++|+.+|+++
T Consensus 248 ---------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~a 307 (365)
T 4eqf_A 248 ---------------SLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI-----NLGAYREAVSNFLTA 307 (365)
T ss_dssp ---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HHTCCHHHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH-----HCCCHHHHHHHHHHH
Confidence 2356789999999999999999999998 8888999988887554 689999999999999
Q ss_pred hcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHH
Q 003047 721 LSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHF 800 (854)
Q Consensus 721 l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~ 800 (854)
+. .+... .. |. .+. .....+.++.+|+.++..+|+.+.|.++
T Consensus 308 l~--~~~~~------------------~~---------------~~--~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 349 (365)
T 4eqf_A 308 LS--LQRKS------------------RN---------------QQ--QVP-HPAISGNIWAALRIALSLMDQPELFQAA 349 (365)
T ss_dssp HH--HHHCC------------------------------------------------CHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HH--hCccc------------------CC---------------Cc--ccc-hhhhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 93 11000 00 00 000 0011467889999999999999999999
Q ss_pred HHHHHhh
Q 003047 801 VTQALSI 807 (854)
Q Consensus 801 ~~~Al~~ 807 (854)
..+.+..
T Consensus 350 ~~~~l~~ 356 (365)
T 4eqf_A 350 NLGDLDV 356 (365)
T ss_dssp HTTCCGG
T ss_pred HHhhHHH
Confidence 8886554
No 23
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.89 E-value=1.1e-21 Score=215.67 Aligned_cols=315 Identities=14% Similarity=0.044 Sum_probs=245.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhh
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDP----KILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARAT 101 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~----~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (854)
.+..++..|..++..|+|++|+.+|++++++.|.++ .+++++|.+++..++ +.+++..+.+++....
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~al~~~~--- 78 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD------YAKALEYHHHDLTLAR--- 78 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHH---
Confidence 466789999999999999999999999999999984 689999999886654 4446666666653210
Q ss_pred cccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCch
Q 003047 102 GEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDE 181 (854)
Q Consensus 102 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e 181 (854)
. ..+.+..+..++++|.+|...|+|++|+.+|++++...+...+
T Consensus 79 -~-----------------------------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 122 (406)
T 3sf4_A 79 -T-----------------------------------IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND 122 (406)
T ss_dssp -H-----------------------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred -h-----------------------------------ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc
Confidence 0 0125667889999999999999999999999999997666544
Q ss_pred hh-HHHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccC
Q 003047 182 TT-ALQICLLLLDVALACHD--------------------AFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYS 240 (854)
Q Consensus 182 ~~-~~~~~l~l~~vy~~~~~--------------------~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (854)
.. ...++..++.+|...|+ +++|+ .++++++.+..... +
T Consensus 123 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~---~~~~~al~~~~~~~-~---------------- 182 (406)
T 3sf4_A 123 KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV---DFYEENLSLVTALG-D---------------- 182 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH---HHHHHHHHHHHHTT-C----------------
T ss_pred ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH---HHHHHHHHHHHhcc-C----------------
Confidence 43 34467788999999999 99997 56677766541110 0
Q ss_pred CCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHH
Q 003047 241 SVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLK 320 (854)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 320 (854)
....
T Consensus 183 ----------------------------------------------------------------------------~~~~ 186 (406)
T 3sf4_A 183 ----------------------------------------------------------------------------RAAQ 186 (406)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------cHHH
Confidence 0000
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCC
Q 003047 321 LKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSL------ALFLKSQLEYARRNHRKAIKLLLALSNR----TEMG 390 (854)
Q Consensus 321 ~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~------a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~ 390 (854)
.......+.+|...|++++|++.+++++.+. |+... +++.+|.++...|++++|+++|++++.. .++.
T Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 264 (406)
T 3sf4_A 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 264 (406)
T ss_dssp HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCch
Confidence 1133445778888999999999999999998 65543 8899999999999999999999999973 1111
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Q 003047 391 ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 391 ~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL 470 (854)
....+++++|.+|..+|++++|+.+|++++.+.+.... .+....++.++|.+|...|++++|+.+|++++
T Consensus 265 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 265 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELND----------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC----------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22668889999999999999999999999998543321 11236788999999999999999999999999
Q ss_pred HhcCCC------HHHHHHHHHHHHHHHhc
Q 003047 471 LVFYKQ------PLLWLRLAECCLMALEK 493 (854)
Q Consensus 471 ~l~P~~------~~aw~~La~~~i~~~~~ 493 (854)
.+.+.. ..++..+|.++...+..
T Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 335 EISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 995443 67899999999865553
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.89 E-value=4.1e-21 Score=204.71 Aligned_cols=285 Identities=11% Similarity=0.061 Sum_probs=227.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccC
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQT 105 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 105 (854)
....++..|..++..|+|++|+.+|+++++.+|+++.+++.+|.+++..++ +.+++..+.+.+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~A~~~~~~a~~~--------- 84 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEK------DGLAIIALNHARML--------- 84 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHH---------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhc---------
Confidence 345688999999999999999999999999999999999999998886543 45577777777731
Q ss_pred CCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHH
Q 003047 106 EGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTAL 185 (854)
Q Consensus 106 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~ 185 (854)
+|++...++++|.+|...|++++|+++|+++++..+...+.
T Consensus 85 ------------------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--- 125 (327)
T 3cv0_A 85 ------------------------------------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL--- 125 (327)
T ss_dssp ------------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC---
T ss_pred ------------------------------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHH---
Confidence 34567799999999999999999999999999965544332
Q ss_pred HHHHHH--------------HH-HHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccc
Q 003047 186 QICLLL--------------LD-VALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTAD 250 (854)
Q Consensus 186 ~~~l~l--------------~~-vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (854)
...+ +. ++...|++++|+ .++++++... ++.
T Consensus 126 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~---~~~~~~~~~~----~~~------------------------- 171 (327)
T 3cv0_A 126 --GSVNLQADVDIDDLNVQSEDFFFAAPNEYRECR---TLLHAALEMN----PND------------------------- 171 (327)
T ss_dssp ----------------------CCTTSHHHHHHHH---HHHHHHHHHS----TTC-------------------------
T ss_pred --HHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHH---HHHHHHHhhC----CCC-------------------------
Confidence 2222 33 588889999998 4567766543 100
Q ss_pred cccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHH
Q 003047 251 ASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRF 330 (854)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~l 330 (854)
..+....+.+
T Consensus 172 ----------------------------------------------------------------------~~~~~~la~~ 181 (327)
T 3cv0_A 172 ----------------------------------------------------------------------AQLHASLGVL 181 (327)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Confidence 0123345778
Q ss_pred HHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHH
Q 003047 331 LLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYH 410 (854)
Q Consensus 331 yl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~ 410 (854)
|...|++++|++.+++++... |+++.+++.+|.++...|++++|+++|++++. ..|. ...++.++|.+|..+|+++
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~-~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALD-INPG-YVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCC-CHHHHHHHHHHHHHhccHH
Confidence 888999999999999999999 99999999999999999999999999999999 6784 5788999999999999999
Q ss_pred HHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 411 TSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 411 eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
+|+.+|++++...+........ ........+++++|.++...|++++|..+|++++...|+.
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGE----ASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC---------CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHHHhCCcccccccc----chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 9999999999985431100000 0000146899999999999999999999999999887753
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=6.4e-21 Score=203.23 Aligned_cols=277 Identities=14% Similarity=0.016 Sum_probs=221.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTF 437 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~ 437 (854)
..++.+|..++..|++++|+.+|++++. .+|. .+.++..+|.+|...|++++|+.+|++++..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------------- 84 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQ-AAPE-REEAWRSLGLTQAENEKDGLAIIALNHARML--------------- 84 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---------------
Confidence 4678899999999999999999999999 6784 6788999999999999999999999999998
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccc
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGK 517 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~ 517 (854)
.+....+++++|.++...|++++|+.+|++++.+.|++..+|..+...+..... ...+|.
T Consensus 85 -~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~-- 144 (327)
T 3cv0_A 85 -DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDD-----------------LNVQSE-- 144 (327)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------
T ss_pred -CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHH-----------------HHHHHH--
Confidence 344578899999999999999999999999999999998888777544321000 000000
Q ss_pred cceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccc
Q 003047 518 WRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSK 597 (854)
Q Consensus 518 ~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (854)
.. .......++.|..+|+.++.+.|...
T Consensus 145 -------------~~-------------~~~~~~~~~~A~~~~~~~~~~~~~~~-------------------------- 172 (327)
T 3cv0_A 145 -------------DF-------------FFAAPNEYRECRTLLHAALEMNPNDA-------------------------- 172 (327)
T ss_dssp --------------C-------------CTTSHHHHHHHHHHHHHHHHHSTTCH--------------------------
T ss_pred -------------hH-------------HHHHcccHHHHHHHHHHHHhhCCCCH--------------------------
Confidence 00 01112246889999999999887732
Q ss_pred cccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Q 003047 598 NLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALA 677 (854)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~ 677 (854)
.++..+|.++...|++.+|+.
T Consensus 173 -----------------------------------------------------------~~~~~la~~~~~~~~~~~A~~ 193 (327)
T 3cv0_A 173 -----------------------------------------------------------QLHASLGVLYNLSNNYDSAAA 193 (327)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHTTCHHHHHH
T ss_pred -----------------------------------------------------------HHHHHHHHHHHHhccHHHHHH
Confidence 235577889999999999999
Q ss_pred HHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCC
Q 003047 678 AARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAA 756 (854)
Q Consensus 678 ~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 756 (854)
++++++. .|..+..+..+|.+| ...|++++|+.++++++. .+
T Consensus 194 ~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~a~~--~~------------------------------ 236 (327)
T 3cv0_A 194 NLRRAVELRPDDAQLWNKLGATL-----ANGNRPQEALDAYNRALD--IN------------------------------ 236 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHH--HC------------------------------
T ss_pred HHHHHHHhCCCcHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHH--cC------------------------------
Confidence 9999997 888888888887755 468999999999999993 11
Q ss_pred CCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHh
Q 003047 757 AKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPR------------STEATLTAIYVDLM 824 (854)
Q Consensus 757 ~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~------------~~~a~~l~~y~~L~ 824 (854)
|. .+.+++++|.++..+|++++|.+++++++.+.|+ .+.++..++.++.+
T Consensus 237 --------~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (327)
T 3cv0_A 237 --------PG----------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV 298 (327)
T ss_dssp --------TT----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH
T ss_pred --------CC----------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh
Confidence 22 4678899999999999999999999999999999 78899999999999
Q ss_pred cCCHHHHHHHHHh
Q 003047 825 LGKSQEALAKLKY 837 (854)
Q Consensus 825 ~G~~~eA~~~lk~ 837 (854)
+|++++|..++++
T Consensus 299 ~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 299 MNRPDLVELTYAQ 311 (327)
T ss_dssp TTCHHHHHHHTTC
T ss_pred cCCHHHHHHHHHH
Confidence 9999999999986
No 26
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.88 E-value=5.7e-21 Score=212.07 Aligned_cols=299 Identities=12% Similarity=0.038 Sum_probs=236.8
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHh
Q 003047 24 LSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDP----KILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELAR 99 (854)
Q Consensus 24 ~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~----~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 99 (854)
...+..++..|..++..|+|++|+.+|+++++..|+++ .+++++|.+++..++ +.+++..+.+++....
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~------~~~A~~~~~~al~~~~- 117 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGD------YNKAMQYHKHDLTLAK- 117 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTC------HHHHHHHHHHHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHH-
Confidence 57788999999999999999999999999999999997 589999999887754 4446666666664210
Q ss_pred hhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCC
Q 003047 100 ATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPI 179 (854)
Q Consensus 100 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~ 179 (854)
. ..+++..+..++++|.+|+.+|+|++|+.+|++++...+..
T Consensus 118 ---~-----------------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 159 (411)
T 4a1s_A 118 ---S-----------------------------------MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL 159 (411)
T ss_dssp ---H-----------------------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ---H-----------------------------------ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 0 01256788899999999999999999999999999976554
Q ss_pred chh-hHHHHHHHHHHHHHHccC-----------------HHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCC
Q 003047 180 DET-TALQICLLLLDVALACHD-----------------AFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSS 241 (854)
Q Consensus 180 ~e~-~~~~~~l~l~~vy~~~~~-----------------~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (854)
.+. ....++..++.+|...|+ +++|+ .++++++.+..... +
T Consensus 160 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~---~~~~~al~~~~~~~-~----------------- 218 (411)
T 4a1s_A 160 GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV---EFYQENLKLMRDLG-D----------------- 218 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH---HHHHHHHHHHHHHT-C-----------------
T ss_pred hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH---HHHHHHHHHHHHcC-C-----------------
Confidence 443 344577789999999999 88887 56677765531100 0
Q ss_pred CCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHH
Q 003047 242 VPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKL 321 (854)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 321 (854)
.....
T Consensus 219 ---------------------------------------------------------------------------~~~~~ 223 (411)
T 4a1s_A 219 ---------------------------------------------------------------------------RGAQG 223 (411)
T ss_dssp ---------------------------------------------------------------------------HHHHH
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 00011
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHhcCHHHHHHHHHHhhhccCC-----C
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSL------ALFLKSQLEYARRNHRKAIKLLLALSNRTEM-----G 390 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~------a~~lla~ly~~~g~~~kAl~~l~kal~~~dp-----~ 390 (854)
......+.+|...|++++|++.+++++.+. |+... +++.+|.+|...|++++|+++|++++.. .+ .
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~ 300 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIA--REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL-AVELGERE 300 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HHHTTCHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH-HHHcCCHH
Confidence 234456888899999999999999999998 65433 8899999999999999999999999983 22 1
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Q 003047 391 ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 391 ~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL 470 (854)
....++.++|.+|..+|++++|+.+|++++.+.+.... ......+++++|.+|...|++++|+.+|++++
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD----------RIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC----------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 23678889999999999999999999999998554321 11235688999999999999999999999999
Q ss_pred HhcCCC
Q 003047 471 LVFYKQ 476 (854)
Q Consensus 471 ~l~P~~ 476 (854)
.+.+..
T Consensus 371 ~~~~~~ 376 (411)
T 4a1s_A 371 QLAXXX 376 (411)
T ss_dssp HHCCHH
T ss_pred HHHhhc
Confidence 999873
No 27
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.88 E-value=7.5e-21 Score=213.80 Aligned_cols=239 Identities=10% Similarity=0.001 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHhhhccCCCccHHHHHHHH
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRN-HRKAIKLLLALSNRTEMGISSMFNNNLG 400 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~-~~kAl~~l~kal~~~dp~~~a~~~nnLG 400 (854)
....+++.+|...|++++|++.+++++.++ |++..+++.+|.++...|+ +++|+++|++++. .+|. +..+|+++|
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~-l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE-EQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-HCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-HCCC-CHHHHHHHH
Confidence 356677899999999999999999999999 9999999999999999997 9999999999999 7994 688999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHH
Q 003047 401 CIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLW 480 (854)
Q Consensus 401 ~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw 480 (854)
.+|..+|++++|+.+|+++|.+ .+.+..+|+++|.++..+|++++|+.+|+++|.++|+++.+|
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~l----------------dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~ 237 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQ----------------DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW 237 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh----------------CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999 456789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 003047 481 LRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCL 560 (854)
Q Consensus 481 ~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l 560 (854)
+++|.++... .+ ..+ . ..++.++.+|
T Consensus 238 ~~lg~~l~~l--~~-------------------------------------~~~-----------e----A~~~~el~~~ 263 (382)
T 2h6f_A 238 NQRYFVISNT--TG-------------------------------------YND-----------R----AVLEREVQYT 263 (382)
T ss_dssp HHHHHHHHHT--TC-------------------------------------SCS-----------H----HHHHHHHHHH
T ss_pred HHHHHHHHHh--cC-------------------------------------cch-----------H----HHHHHHHHHH
Confidence 9999998721 11 000 0 0135568999
Q ss_pred HHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhc
Q 003047 561 LNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSL 640 (854)
Q Consensus 561 ~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i 640 (854)
++|+.+.|++.
T Consensus 264 ~~Al~l~P~~~--------------------------------------------------------------------- 274 (382)
T 2h6f_A 264 LEMIKLVPHNE--------------------------------------------------------------------- 274 (382)
T ss_dssp HHHHHHSTTCH---------------------------------------------------------------------
T ss_pred HHHHHHCCCCH---------------------------------------------------------------------
Confidence 99999999954
Q ss_pred cchhhHhHHhhHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhc-----C-CHHH
Q 003047 641 SYYEDVCRRENQMIKQALLANLAYVELEME--NPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLL-----N-RPKE 712 (854)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~l~~la~v~l~lg--~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~l-----g-r~~e 712 (854)
.++..++.++..+| ++.+|+..++++-..|+++.++..||.+|... ... + .+++
T Consensus 275 ----------------~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~--~~~~~~~~~~~~~~ 336 (382)
T 2h6f_A 275 ----------------SAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM--LENQCDNKEDILNK 336 (382)
T ss_dssp ----------------HHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH--HHTTCSSHHHHHHH
T ss_pred ----------------HHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHH--hcccccchHHHHHH
Confidence 23567788888888 79999999999833788999999999887631 100 2 3699
Q ss_pred HHHHHHhh-h
Q 003047 713 AAEHFSMY-L 721 (854)
Q Consensus 713 Al~~l~~~-l 721 (854)
|+++|++. +
T Consensus 337 A~~~~~~l~~ 346 (382)
T 2h6f_A 337 ALELCEILAK 346 (382)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 99999998 7
No 28
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.88 E-value=4e-21 Score=216.05 Aligned_cols=254 Identities=8% Similarity=-0.055 Sum_probs=215.8
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhchhc
Q 003047 348 MNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK-YHTSSVFLSKALSNSASL 426 (854)
Q Consensus 348 l~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~-~~eAi~~f~kAL~~~~~l 426 (854)
+.+. |++..+++.+|.++...|++++|+++|++++. .+|. +..+|+++|.+|..+|+ +++|+.+|+++|.+
T Consensus 90 i~~~--p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~-l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l---- 161 (382)
T 2h6f_A 90 IIYS--DKFRDVYDYFRAVLQRDERSERAFKLTRDAIE-LNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE---- 161 (382)
T ss_dssp ECCC--HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----
T ss_pred hhCC--hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHH-hCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH----
Confidence 4556 89999999999999999999999999999999 7994 68899999999999997 99999999999998
Q ss_pred ccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCc
Q 003047 427 RKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGS 506 (854)
Q Consensus 427 ~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~ 506 (854)
.+.+..+|+++|.++..+|++++|+.+|+++|.++|+++.+|+++|.++...++
T Consensus 162 ------------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~-------------- 215 (382)
T 2h6f_A 162 ------------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL-------------- 215 (382)
T ss_dssp ------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------------
T ss_pred ------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC--------------
Confidence 456789999999999999999999999999999999999999999999883211
Q ss_pred ccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccc
Q 003047 507 EVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVE 586 (854)
Q Consensus 507 ~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~ 586 (854)
++.|+.+|++||.+.|...
T Consensus 216 ----------------------------------------------~~eAl~~~~~al~l~P~~~--------------- 234 (382)
T 2h6f_A 216 ----------------------------------------------WDNELQYVDQLLKEDVRNN--------------- 234 (382)
T ss_dssp ----------------------------------------------CTTHHHHHHHHHHHCTTCH---------------
T ss_pred ----------------------------------------------hHHHHHHHHHHHHhCCCCH---------------
Confidence 1349999999999999854
Q ss_pred ccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHH
Q 003047 587 ESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVE 666 (854)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~ 666 (854)
.++.++|+++
T Consensus 235 ----------------------------------------------------------------------~a~~~lg~~l 244 (382)
T 2h6f_A 235 ----------------------------------------------------------------------SVWNQRYFVI 244 (382)
T ss_dssp ----------------------------------------------------------------------HHHHHHHHHH
T ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Confidence 2367789999
Q ss_pred HH-cCCHHHH-----HHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHhhhcCCCCCCCCCCchhhh
Q 003047 667 LE-MENPVKA-----LAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLN--RPKEAAEHFSMYLSGGDNFDLPFSGEDCE 737 (854)
Q Consensus 667 l~-lg~~~~A-----l~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lg--r~~eAl~~l~~~l~~~~~~~~~~~~~~~~ 737 (854)
.. .|.+.+| +.++++++. .|.+..+|.+++.+|. ..| ++++|++++... . .+
T Consensus 245 ~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~-----~~g~~~~~~a~~~~~~~-~--~~----------- 305 (382)
T 2h6f_A 245 SNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-----DRGLSKYPNLLNQLLDL-Q--PS----------- 305 (382)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-----TTCGGGCHHHHHHHHHH-T--TT-----------
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-----ccCccchHHHHHHHHHh-c--cC-----------
Confidence 99 4554777 599999997 8999999988887654 566 699999988775 2 11
Q ss_pred hhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-Hhh
Q 003047 738 QWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQG--------E-FERAHHFVTQA-LSI 807 (854)
Q Consensus 738 ~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g--------~-~e~A~~~~~~A-l~~ 807 (854)
|. ...++..||.+|..+| + +++|+++|+++ +++
T Consensus 306 ---------------------------p~----------~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 306 ---------------------------HS----------SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp ---------------------------CC----------CHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred ---------------------------CC----------CHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 22 4677888999999985 3 69999999999 999
Q ss_pred CCCCHHHHHHHHHHH
Q 003047 808 LPRSTEATLTAIYVD 822 (854)
Q Consensus 808 ~P~~~~a~~l~~y~~ 822 (854)
+|.....+..++-.+
T Consensus 349 DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 349 DTIRKEYWRYIGRSL 363 (382)
T ss_dssp CGGGHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH
Confidence 999876666555544
No 29
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.87 E-value=9.4e-21 Score=200.96 Aligned_cols=298 Identities=14% Similarity=0.050 Sum_probs=228.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhh
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDD----PKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARAT 101 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~----~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (854)
.+..|+..|..++..|+|++|+.+|+++++..|.+ +.+++++|.+++..++ +.+++..+.+++....
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~al~~~~--- 74 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD------YAKALEYHHHDLTLAR--- 74 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHhh---
Confidence 35689999999999999999999999999999999 4788999999886654 3446666666553210
Q ss_pred cccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCch
Q 003047 102 GEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDE 181 (854)
Q Consensus 102 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e 181 (854)
. ..+.+..+..++++|.+|+..|+|++|+++|+++++..+...+
T Consensus 75 -~-----------------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 118 (338)
T 3ro2_A 75 -T-----------------------------------IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND 118 (338)
T ss_dssp -H-----------------------------------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -c-----------------------------------ccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Confidence 0 0124567889999999999999999999999999997776655
Q ss_pred hh-HHHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccC
Q 003047 182 TT-ALQICLLLLDVALACHD--------------------AFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYS 240 (854)
Q Consensus 182 ~~-~~~~~l~l~~vy~~~~~--------------------~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (854)
.. ...++..++.+|...|+ +++|+ .++++++.+..... +
T Consensus 119 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~---~~~~~a~~~~~~~~-~---------------- 178 (338)
T 3ro2_A 119 KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV---DLYEENLSLVTALG-D---------------- 178 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH---HHHHHHHHHHHHHT-C----------------
T ss_pred chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH---HHHHHHHHHHHhcC-C----------------
Confidence 43 34467778999999999 88887 45676665431100 0
Q ss_pred CCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHH
Q 003047 241 SVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLK 320 (854)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 320 (854)
....
T Consensus 179 ----------------------------------------------------------------------------~~~~ 182 (338)
T 3ro2_A 179 ----------------------------------------------------------------------------RAAQ 182 (338)
T ss_dssp ----------------------------------------------------------------------------HHHH
T ss_pred ----------------------------------------------------------------------------HHHH
Confidence 0001
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCC
Q 003047 321 LKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS------SLALFLKSQLEYARRNHRKAIKLLLALSNR----TEMG 390 (854)
Q Consensus 321 ~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~------~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~ 390 (854)
..+....+.+|...|++++|++.+++++.+. |.. ..+++.+|.++...|++++|+++|++++.. .++.
T Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 260 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchh
Confidence 1234456788889999999999999999987 543 238899999999999999999999999873 1111
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Q 003047 391 ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 391 ~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL 470 (854)
....++.++|.+|..+|++++|+.+|++++...+.... ......+++++|.+|...|++++|+.+|++++
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD----------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC----------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 22668889999999999999999999999998554321 11235688899999999999999999999999
Q ss_pred HhcCCC
Q 003047 471 LVFYKQ 476 (854)
Q Consensus 471 ~l~P~~ 476 (854)
.+.+..
T Consensus 331 ~~~~~~ 336 (338)
T 3ro2_A 331 EISREV 336 (338)
T ss_dssp HC----
T ss_pred HHHHhh
Confidence 998764
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=5.5e-20 Score=189.04 Aligned_cols=248 Identities=13% Similarity=0.120 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhccc
Q 003047 25 SVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQ 104 (854)
Q Consensus 25 ~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 104 (854)
+.++.++..|..++..|+|++|+.+|+++++.+ .++.+++++|.+++..++ +.+++..+.+++...
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~------~~~A~~~~~~a~~~~------- 68 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGE------YETAISTLNDAVEQG------- 68 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHccc------HHHHHHHHHHHHHhC-------
Confidence 568899999999999999999999999999999 999999999999886653 455777777766421
Q ss_pred CCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhH
Q 003047 105 TEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTA 184 (854)
Q Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~ 184 (854)
+. ...+.+..+..++++|.+|...|+|++|+++|+++++..+.
T Consensus 69 ~~-------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------ 111 (258)
T 3uq3_A 69 RE-------------------------------MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT------ 111 (258)
T ss_dssp HH-------------------------------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------
T ss_pred cc-------------------------------cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch------
Confidence 00 00012223667888888888888888888888777773222
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhh
Q 003047 185 LQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASE 264 (854)
Q Consensus 185 ~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (854)
..++...|
T Consensus 112 -------~~~~~~~~----------------------------------------------------------------- 119 (258)
T 3uq3_A 112 -------ADILTKLR----------------------------------------------------------------- 119 (258)
T ss_dssp -------HHHHHHHH-----------------------------------------------------------------
T ss_pred -------hHHHHHHh-----------------------------------------------------------------
Confidence 12222233
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 003047 265 NALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREV 344 (854)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~el 344 (854)
++++|++.+
T Consensus 120 -----------------------------------------------------------------------~~~~a~~~~ 128 (258)
T 3uq3_A 120 -----------------------------------------------------------------------NAEKELKKA 128 (258)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHH
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 334455555
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 003047 345 KLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 345 k~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~ 424 (854)
++++... |+++.+++.+|.++...|++++|+++|++++. .+|. .+.+++++|.+|..+|++++|+.+|++++..
T Consensus 129 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-- 202 (258)
T 3uq3_A 129 EAEAYVN--PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK-RAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK-- 202 (258)
T ss_dssp HHHHHCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHcC--cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--
Confidence 5555666 77778888889999999999999999999998 6774 5788889999999999999999999999997
Q ss_pred hcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc------CCCHHHHHHHHHH
Q 003047 425 SLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF------YKQPLLWLRLAEC 486 (854)
Q Consensus 425 ~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~------P~~~~aw~~La~~ 486 (854)
.+....+++++|.++...|++++|+.+|+++++++ |++..+|..|+.|
T Consensus 203 --------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 203 --------------DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp --------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred --------------CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 34457889999999999999999999999999999 9999999888876
No 31
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.87 E-value=3.8e-20 Score=193.16 Aligned_cols=149 Identities=9% Similarity=-0.068 Sum_probs=114.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA 407 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g 407 (854)
+.+|...|++++|++.+++++.+. |+++.+++.+|...+..+++++|+++|++++. .+|. ...++..+|.++..+|
T Consensus 115 ~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~p~-~~~~~~~~~~~~~~~~ 190 (272)
T 3u4t_A 115 GSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNKEYVKADSSFVKVLE-LKPN-IYIGYLWRARANAAQD 190 (272)
T ss_dssp HHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTT-CHHHHHHHHHHHHHHS
T ss_pred HHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcc-chHHHHHHHHHHHHcC
Confidence 334444555555555555555556 88888888899555566699999999999999 7884 5788999999999999
Q ss_pred C---HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003047 408 K---YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLA 484 (854)
Q Consensus 408 ~---~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La 484 (854)
+ +++|+.+|++++.........+ ......+++++|.+|...|++++|+++|+++++++|+++.+|..++
T Consensus 191 ~~~~~~~A~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 191 PDTKQGLAKPYYEKLIEVCAPGGAKY--------KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp TTCSSCTTHHHHHHHHHHHGGGGGGG--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred cchhhHHHHHHHHHHHHHHhcccccc--------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence 9 9999999999999843221000 0112478999999999999999999999999999999999999999
Q ss_pred HHHH
Q 003047 485 ECCL 488 (854)
Q Consensus 485 ~~~i 488 (854)
.+..
T Consensus 263 ~~~~ 266 (272)
T 3u4t_A 263 MKLE 266 (272)
T ss_dssp ----
T ss_pred hhhc
Confidence 8766
No 32
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.86 E-value=1.3e-20 Score=216.11 Aligned_cols=385 Identities=14% Similarity=0.036 Sum_probs=252.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCC
Q 003047 32 KEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNI 111 (854)
Q Consensus 32 ~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 111 (854)
..|..+++.|+|++|+++|+++.+. +++.++++||.+++..+ .+.++.+++..+++++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g---~~~d~~~A~~~~~~A~~---------------- 66 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTR---DPAQIKQAEATYRAAAD---------------- 66 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccC---CCCCHHHHHHHHHHHHh----------------
Confidence 4578889999999999999999775 57888999998886543 34344567777777662
Q ss_pred CCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhh-----cHHHHHHHHHHhhhccCCCchhhHHH
Q 003047 112 GSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLH-----EYAKALSVLEPLYQNIEPIDETTALQ 186 (854)
Q Consensus 112 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~-----~y~~A~~~~e~l~~~~~~~~e~~~~~ 186 (854)
. ++..++++|.+++..+ ++++|+++|+++.+.-. .+
T Consensus 67 -------------------------------~-~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~--~~----- 107 (452)
T 3e4b_A 67 -------------------------------T-SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE--GN----- 107 (452)
T ss_dssp ------------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC--SS-----
T ss_pred -------------------------------C-CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC--HH-----
Confidence 1 3457889999777665 88999999999888321 11
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhh
Q 003047 187 ICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENA 266 (854)
Q Consensus 187 ~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (854)
+++.|+.+|...+..+++...+..++++..
T Consensus 108 A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~-------------------------------------------------- 137 (452)
T 3e4b_A 108 TLIPLAMLYLQYPHSFPNVNAQQQISQWQA-------------------------------------------------- 137 (452)
T ss_dssp CHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--------------------------------------------------
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--------------------------------------------------
Confidence 467778877755554444322222222211
Q ss_pred hhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 003047 267 LSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKL 346 (854)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~ 346 (854)
T Consensus 138 -------------------------------------------------------------------------------- 137 (452)
T 3e4b_A 138 -------------------------------------------------------------------------------- 137 (452)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcC----HHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHH
Q 003047 347 AMNIARGKDSSLALFLKSQLEYARRN----HRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA---KYHTSSVFLSKA 419 (854)
Q Consensus 347 al~~~~~P~~~~a~~lla~ly~~~g~----~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g---~~~eAi~~f~kA 419 (854)
+.++.+++.+|.+|...+. .++|..++..+.. .+| .++++||.+|...| ++++|+.+|+++
T Consensus 138 -------~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~-~~~----~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a 205 (452)
T 3e4b_A 138 -------AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN-TTD----ICYVELATVYQKKQQPEQQAELLKQMEAG 205 (452)
T ss_dssp -------HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT-TCT----THHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc-CCH----HHHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 2344566666666666663 3444445555555 455 26788999999999 999999999999
Q ss_pred HHhchhcccCCccccccccCCccHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Q 003047 420 LSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC----GKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGL 495 (854)
Q Consensus 420 L~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~----Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~ 495 (854)
... .+..+..++++|.+|... +++++|+.+|+++. |+++.++++||.++.. ..
T Consensus 206 a~~----------------g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~---~~- 262 (452)
T 3e4b_A 206 VSR----------------GTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYD---FP- 262 (452)
T ss_dssp HHT----------------TCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHH---SG-
T ss_pred HHC----------------CCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHh---CC-
Confidence 887 345567778999998766 68999999999987 8999999999988551 10
Q ss_pred cCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCccccc
Q 003047 496 VAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYS 575 (854)
Q Consensus 496 ~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~ 575 (854)
. ...++.|..+|++|.... +.
T Consensus 263 ~-----------------------------------------------------~~d~~~A~~~~~~Aa~~g--~~---- 283 (452)
T 3e4b_A 263 E-----------------------------------------------------LGDVEQMMKYLDNGRAAD--QP---- 283 (452)
T ss_dssp G-----------------------------------------------------GCCHHHHHHHHHHHHHTT--CH----
T ss_pred C-----------------------------------------------------CCCHHHHHHHHHHHHHCC--CH----
Confidence 0 003477999999887322 11
Q ss_pred ccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHH
Q 003047 576 KFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIK 655 (854)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~ 655 (854)
T Consensus 284 -------------------------------------------------------------------------------- 283 (452)
T 3e4b_A 284 -------------------------------------------------------------------------------- 283 (452)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHcC-----CHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCC
Q 003047 656 QALLANLAYVELEME-----NPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLP 730 (854)
Q Consensus 656 ~~~l~~la~v~l~lg-----~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~ 730 (854)
.++.+||.++. .| |+.+|+.+++++. +.++.++..||.+|.-- .--..++++|+.+|+++.. .
T Consensus 284 -~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg~~y~~G-~g~~~d~~~A~~~~~~Aa~--~----- 351 (452)
T 3e4b_A 284 -RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--GREVAADYYLGQIYRRG-YLGKVYPQKALDHLLTAAR--N----- 351 (452)
T ss_dssp -HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--TTCHHHHHHHHHHHHTT-TTSSCCHHHHHHHHHHHHT--T-----
T ss_pred -HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHHHHCC-CCCCcCHHHHHHHHHHHHh--h-----
Confidence 12456777777 66 9999999999988 88899999999887620 0002289999999999882 1
Q ss_pred CCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Q 003047 731 FSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAM----QGEFERAHHFVTQALS 806 (854)
Q Consensus 731 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~----~g~~e~A~~~~~~Al~ 806 (854)
. .+.+.++||.+|.. .+|+++|..+|++|.+
T Consensus 352 -----------------------------------g----------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 352 -----------------------------------G----------QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp -----------------------------------T----------CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred -----------------------------------C----------hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 0 24567889999985 4699999999999988
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 807 ILPRSTEATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 807 ~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
..+......+..+...+..++..+|..++++
T Consensus 387 ~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 387 QDTPEANDLATQLEAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp TCCHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6544444444444444556677788888876
No 33
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.86 E-value=6.1e-20 Score=191.62 Aligned_cols=259 Identities=16% Similarity=0.117 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccccc
Q 003047 357 SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLT 436 (854)
Q Consensus 357 ~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~ 436 (854)
++.++.+|..++..|++++|+++|++++. .+|. .+.++.++|.+|..+|++++|+.+|++++.. + .+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~----~~------ 69 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEA-KKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSK-V----NA------ 69 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHH-TTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-S----CT------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-c----Cc------
Confidence 34556666666666666666666666666 4553 3445666666666666666666666666663 1 00
Q ss_pred ccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeecccc
Q 003047 437 FSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKG 516 (854)
Q Consensus 437 ~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g 516 (854)
......+++++|.++...|++++|+.+|++++.++|+++.+|..+|.++. ..+
T Consensus 70 --~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~---~~~---------------------- 122 (272)
T 3u4t_A 70 --TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY---NKG---------------------- 122 (272)
T ss_dssp --TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH---HTT----------------------
T ss_pred --hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH---Hcc----------------------
Confidence 01124456666666666666666776677666666666666666666665 110
Q ss_pred ccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccc
Q 003047 517 KWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASS 596 (854)
Q Consensus 517 ~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (854)
.++.|+.+|++|+.+.|...
T Consensus 123 -----------------------------------~~~~A~~~~~~al~~~~~~~------------------------- 142 (272)
T 3u4t_A 123 -----------------------------------NFPLAIQYMEKQIRPTTTDP------------------------- 142 (272)
T ss_dssp -----------------------------------CHHHHHHHHGGGCCSSCCCH-------------------------
T ss_pred -----------------------------------CHHHHHHHHHHHhhcCCCcH-------------------------
Confidence 13556666666666654422
Q ss_pred ccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHH
Q 003047 597 KNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKAL 676 (854)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al 676 (854)
.++..+|.+....+++.+|+
T Consensus 143 ------------------------------------------------------------~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 143 ------------------------------------------------------------KVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHHTTCHHHHH
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 11334453334445667777
Q ss_pred HHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccC
Q 003047 677 AAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNR---PKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNG 752 (854)
Q Consensus 677 ~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr---~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 752 (854)
.++++++. .|+.+..+..+|.+|. .+|+ +++|+.++++++. .. ..
T Consensus 163 ~~~~~a~~~~p~~~~~~~~~~~~~~-----~~~~~~~~~~A~~~~~~a~~--~~---------------~~--------- 211 (272)
T 3u4t_A 163 SSFVKVLELKPNIYIGYLWRARANA-----AQDPDTKQGLAKPYYEKLIE--VC---------------AP--------- 211 (272)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHH-----HHSTTCSSCTTHHHHHHHHH--HH---------------GG---------
T ss_pred HHHHHHHHhCccchHHHHHHHHHHH-----HcCcchhhHHHHHHHHHHHH--HH---------------hc---------
Confidence 77766665 6666666666666444 4577 8889999988883 10 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 003047 753 GPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVD 822 (854)
Q Consensus 753 ~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~ 822 (854)
.|. +. ......++.+||.++..+|++++|.++++++++++|+++.++-.+..+.
T Consensus 212 -----------~~~---~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 212 -----------GGA---KY--KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp -----------GGG---GG--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred -----------ccc---cc--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 011 00 1224678999999999999999999999999999999998887776664
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.86 E-value=2.5e-20 Score=191.63 Aligned_cols=199 Identities=17% Similarity=0.035 Sum_probs=163.6
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|+++.+++.+|.+++..|++++|+..|++++. .+|. .+.+++++|.+|.++|++++|+.+|++++.+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----------- 68 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALK-ENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVAR----------- 68 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------
Confidence 88999999999999999999999999999999 7894 6889999999999999999999999999998
Q ss_pred cccccCCccHHHHHHHHHHHHHC-----------CCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCC
Q 003047 434 LLTFSQDKSLLITYNCGLQYLAC-----------GKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSL 502 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~-----------Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~ 502 (854)
.|....+++++|.++... |++++|+.+|+++++++|+++.+|+.+|.++. ..+
T Consensus 69 -----~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~---~~g-------- 132 (217)
T 2pl2_A 69 -----TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA---LLG-------- 132 (217)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HTT--------
T ss_pred -----CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH---HcC--------
Confidence 355678999999999999 99999999999999999999999999999988 210
Q ss_pred CCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCC
Q 003047 503 SDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSN 582 (854)
Q Consensus 503 ~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~ 582 (854)
.++.|+.+|++|+.+. ...
T Consensus 133 -------------------------------------------------~~~~A~~~~~~al~~~-~~~----------- 151 (217)
T 2pl2_A 133 -------------------------------------------------ERDKAEASLKQALALE-DTP----------- 151 (217)
T ss_dssp -------------------------------------------------CHHHHHHHHHHHHHHC-CCH-----------
T ss_pred -------------------------------------------------ChHHHHHHHHHHHhcc-cch-----------
Confidence 2477999999999998 422
Q ss_pred CcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHH
Q 003047 583 SSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANL 662 (854)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~l 662 (854)
.++.++
T Consensus 152 --------------------------------------------------------------------------~~~~~l 157 (217)
T 2pl2_A 152 --------------------------------------------------------------------------EIRSAL 157 (217)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 235678
Q ss_pred HHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 003047 663 AYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 663 a~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l 721 (854)
|.++..+|++.+|+.++++++. .|+++.++..+|.+| ..+|++++|+.++++.-
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~-----~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL-----LLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-----TC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-----HHccCHHHHHHHHHHHh
Confidence 9999999999999999999998 899999998888754 57899999999998765
No 35
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.85 E-value=4.5e-20 Score=202.82 Aligned_cols=313 Identities=15% Similarity=0.079 Sum_probs=241.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS----LALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSM 394 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~----~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~ 394 (854)
..+.++.++...|++++|+..+++++.+. |+++ .+++.+|.+++..|++++|+++|++++.. .++...+.
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34557889999999999999999999999 9995 57889999999999999999999999873 12224577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC----------------
Q 003047 395 FNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK---------------- 458 (854)
Q Consensus 395 ~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk---------------- 458 (854)
++.++|.+|..+|++++|+.+|++++.+.+.... ......+++++|.+|...|+
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND----------KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc----------ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhh
Confidence 8999999999999999999999999998654321 01235689999999999999
Q ss_pred ----cHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCc
Q 003047 459 ----PVLAARCFQKSSLV------FYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFR 528 (854)
Q Consensus 459 ----~eeAl~~y~kAL~l------~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~ 528 (854)
+++|+.+|++++.+ .|....+|..+|.++.. .+
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~---~g---------------------------------- 201 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL---LG---------------------------------- 201 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---HT----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH---cc----------------------------------
Confidence 99999999999998 44446678888888773 10
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccccccccccc
Q 003047 529 KNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLD 608 (854)
Q Consensus 529 ~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (854)
.++.|..+|+.|+.+.|.....
T Consensus 202 -----------------------~~~~A~~~~~~al~~~~~~~~~----------------------------------- 223 (406)
T 3sf4_A 202 -----------------------NFRDAVIAHEQRLLIAKEFGDK----------------------------------- 223 (406)
T ss_dssp -----------------------BHHHHHHHHHHHHHHHHHTTCH-----------------------------------
T ss_pred -----------------------CHHHHHHHHHHHHHHHHhcCCc-----------------------------------
Confidence 2367999999999998774310
Q ss_pred ccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCC
Q 003047 609 SKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPD 687 (854)
Q Consensus 609 ~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~ 687 (854)
.....++..+|.++..+|++.+|+.++++++. .+.
T Consensus 224 --------------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 259 (406)
T 3sf4_A 224 --------------------------------------------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 259 (406)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 00114577889999999999999999999986 332
Q ss_pred C-hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCC
Q 003047 688 C-SRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSR 766 (854)
Q Consensus 688 ~-~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~ 766 (854)
. .......+....+.++..+|++++|+.++++++. .. ... +
T Consensus 260 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~---------------~~~--------------------~- 301 (406)
T 3sf4_A 260 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA--IA---------------QEL--------------------N- 301 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HH---------------HHT--------------------T-
T ss_pred CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--HH---------------Hhc--------------------C-
Confidence 2 1122223333445566789999999999999993 10 000 0
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCHHH
Q 003047 767 DTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRS------TEATLTAIYVDLMLGKSQE 830 (854)
Q Consensus 767 ~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~------~~a~~l~~y~~L~~G~~~e 830 (854)
. ....+.++.++|.++..+|++++|.+++++++++.+.. ..++..++.++...|+...
T Consensus 302 ----~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 302 ----D--RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp ----C--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred ----C--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 0 01257888999999999999999999999999885422 5677788888888887743
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=4.5e-19 Score=191.32 Aligned_cols=265 Identities=13% Similarity=0.108 Sum_probs=210.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 003047 32 KEAALYFQSRKFDECLDLLKQLLDKKPDD-PKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGN 110 (854)
Q Consensus 32 ~~a~~~~~~g~y~~Al~~l~~~l~~~~~~-~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 110 (854)
...-.+|..|+|++|++.++++....|.+ .++..-++.+|+..++ +..++..++.
T Consensus 4 ~~~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~------~~~al~~~~~------------------ 59 (291)
T 3mkr_A 4 FDVKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRK------YGVVLDEIKP------------------ 59 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTC------HHHHHHHSCT------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCC------HHHHHHHhcc------------------
Confidence 35567899999999999999998888887 4677777877775543 2223332211
Q ss_pred CCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhcc-CCCchhhHHHHHH
Q 003047 111 IGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNI-EPIDETTALQICL 189 (854)
Q Consensus 111 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~-~~~~e~~~~~~~l 189 (854)
. ++....++..+|..|...+++++|++.|++++..- .|-+. .+.+
T Consensus 60 -----------------------------~-~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~----~~~~ 105 (291)
T 3mkr_A 60 -----------------------------S-SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNT----TFLL 105 (291)
T ss_dssp -----------------------------T-SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCH----HHHH
T ss_pred -----------------------------c-CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCH----HHHH
Confidence 0 23356788888999999999999999999998742 23332 2578
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhh
Q 003047 190 LLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSR 269 (854)
Q Consensus 190 ~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (854)
.++.+|...|++++|+..+ ++ ++.
T Consensus 106 ~la~~~~~~g~~~~Al~~l---~~---------~~~-------------------------------------------- 129 (291)
T 3mkr_A 106 MAASIYFYDQNPDAALRTL---HQ---------GDS-------------------------------------------- 129 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHH---TT---------CCS--------------------------------------------
T ss_pred HHHHHHHHCCCHHHHHHHH---hC---------CCC--------------------------------------------
Confidence 8899999999999998644 32 000
Q ss_pred hhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 003047 270 TLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMN 349 (854)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~ 349 (854)
......++++|+.+|++++|++.+++++.
T Consensus 130 ---------------------------------------------------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 130 ---------------------------------------------------LECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 01333468899999999999999999999
Q ss_pred hcCCCCCHHHHHHHH--HHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcc
Q 003047 350 IARGKDSSLALFLKS--QLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLR 427 (854)
Q Consensus 350 ~~~~P~~~~a~~lla--~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~ 427 (854)
.+ |++....+..+ .++...|++++|+.+|++++. ..|. .+.+++++|.+|.++|++++|+.+|+++|..
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~-~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~----- 229 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD-KCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDK----- 229 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH-HSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH-hCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Confidence 99 99987666555 344455899999999999999 6884 6889999999999999999999999999998
Q ss_pred cCCccccccccCCccHHHHHHHHHHHHHCCCcHH-HHHHHHHHHHhcCCCHHHHH
Q 003047 428 KDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVL-AARCFQKSSLVFYKQPLLWL 481 (854)
Q Consensus 428 ~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~ee-Al~~y~kAL~l~P~~~~aw~ 481 (854)
.|.++.+++|+|.++...|++++ +.++++++++++|+++.+..
T Consensus 230 -----------~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 230 -----------DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp -----------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred -----------CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 35578899999999999999977 56899999999999998754
No 37
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=2.6e-19 Score=193.26 Aligned_cols=282 Identities=9% Similarity=-0.011 Sum_probs=227.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHH
Q 003047 326 YKVRFLLLTRNLKHAKREVKLAMNIARGKDS-SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYY 404 (854)
Q Consensus 326 ~K~~lyl~~~~~~~A~~elk~al~~~~~P~~-~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~ 404 (854)
|..+-.+..|++.+|+.+++++.... |++ .++.+.++..|...|++++|+..++.. +| ....++..++.+|.
T Consensus 4 ~~~~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~-~~~~a~~~la~~~~ 76 (291)
T 3mkr_A 4 FDVKNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SA-PELQAVRMFAEYLA 76 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SC-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CC-hhHHHHHHHHHHHc
Confidence 45566777999999999999988888 887 468889999999999999999977552 33 24667888999999
Q ss_pred HcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003047 405 QLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLA 484 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La 484 (854)
..+++++|++.|++.+.... .|.+..+++.+|.++...|++++|+++|++ |+++.+|..+|
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~--------------~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~ 137 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSV--------------DVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTV 137 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCC--------------CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhccc--------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHH
Confidence 99999999999999987510 144678899999999999999999999998 99999999999
Q ss_pred HHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 003047 485 ECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNAL 564 (854)
Q Consensus 485 ~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL 564 (854)
.++. +.+ .++.|..+|++++
T Consensus 138 ~~~~---~~g---------------------------------------------------------~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 138 QILL---KLD---------------------------------------------------------RLDLARKELKKMQ 157 (291)
T ss_dssp HHHH---HTT---------------------------------------------------------CHHHHHHHHHHHH
T ss_pred HHHH---HCC---------------------------------------------------------CHHHHHHHHHHHH
Confidence 9888 221 2477999999999
Q ss_pred hhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchh
Q 003047 565 HLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYE 644 (854)
Q Consensus 565 ~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~ 644 (854)
.+.|.....
T Consensus 158 ~~~p~~~~~----------------------------------------------------------------------- 166 (291)
T 3mkr_A 158 DQDEDATLT----------------------------------------------------------------------- 166 (291)
T ss_dssp HHCTTCHHH-----------------------------------------------------------------------
T ss_pred hhCcCcHHH-----------------------------------------------------------------------
Confidence 998773210
Q ss_pred hHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcC
Q 003047 645 DVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSG 723 (854)
Q Consensus 645 ~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~ 723 (854)
.+- ..+ ..++...|++.+|+.++++++. .|+++..+..+|.+ ++.+|++++|+.+|++++.
T Consensus 167 --------~l~-~a~---~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~-----~~~~g~~~eA~~~l~~al~- 228 (291)
T 3mkr_A 167 --------QLA-TAW---VSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAAC-----HMAQGRWEAAEGVLQEALD- 228 (291)
T ss_dssp --------HHH-HHH---HHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHH-----HHHTTCHHHHHHHHHHHHH-
T ss_pred --------HHH-HHH---HHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHH-
Confidence 000 001 1223456999999999999997 89999999888874 4579999999999999993
Q ss_pred CCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHH-HHHHHH
Q 003047 724 GDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFER-AHHFVT 802 (854)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~-A~~~~~ 802 (854)
.+ |. .+.+++|+|.++..+|++++ +.++++
T Consensus 229 -~~--------------------------------------p~----------~~~~l~~l~~~~~~~g~~~eaa~~~~~ 259 (291)
T 3mkr_A 229 -KD--------------------------------------SG----------HPETLINLVVLSQHLGKPPEVTNRYLS 259 (291)
T ss_dssp -HC--------------------------------------TT----------CHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred -hC--------------------------------------CC----------CHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 21 33 57789999999999999976 678999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003047 803 QALSILPRSTEATLTAIYVDLMLGKSQEALAKL 835 (854)
Q Consensus 803 ~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~l 835 (854)
+++++.|+++.+... ..+.+.|+++..-+
T Consensus 260 ~~~~~~P~~~~~~d~----~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 260 QLKDAHRSHPFIKEY----RAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHCTTCHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHH----HHHHHHHHHHHHHc
Confidence 999999999987653 45788888887765
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.5e-18 Score=178.34 Aligned_cols=216 Identities=9% Similarity=-0.058 Sum_probs=183.5
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCC
Q 003047 144 DVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQV 223 (854)
Q Consensus 144 ~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~ 223 (854)
..+..++++|.+++..|+|++|+++|+++++.. ... .+++.++.+|...|++++|+ .++++++.+.....+
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~-----~~~~~~~~~~~~~~~~~~A~---~~~~~a~~~~~~~~~ 73 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDI-----TYLNNRAAAEYEKGEYETAI---STLNDAVEQGREMRA 73 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCT-----HHHHHHHHHHHHTTCHHHHH---HHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccH-----HHHHHHHHHHHHcccHHHHH---HHHHHHHHhCccccc
Confidence 467799999999999999999999999999965 222 36888999999999999998 567777765310000
Q ss_pred CCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccc
Q 003047 224 DSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSN 303 (854)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (854)
+
T Consensus 74 ~------------------------------------------------------------------------------- 74 (258)
T 3uq3_A 74 D------------------------------------------------------------------------------- 74 (258)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 003047 304 ELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLAL 383 (854)
Q Consensus 304 ~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~ka 383 (854)
...........+.+|...|++++|++.+++++.+. |+ +.++...|++++|++.++++
T Consensus 75 -------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~--------~~~~~~~~~~~~a~~~~~~~ 131 (258)
T 3uq3_A 75 -------------YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RT--------ADILTKLRNAEKELKKAEAE 131 (258)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC--------HHHHHHHHHHHHHHHHHHHH
T ss_pred -------------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--ch--------hHHHHHHhHHHHHHHHHHHH
Confidence 00011244557888999999999999999999999 87 57788899999999999999
Q ss_pred hhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHH
Q 003047 384 SNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAA 463 (854)
Q Consensus 384 l~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl 463 (854)
+. .+| ..+.++.++|.+|...|++++|+.+|++++.. .+....+++++|.++...|++++|+
T Consensus 132 ~~-~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~ 193 (258)
T 3uq3_A 132 AY-VNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR----------------APEDARGYSNRAAALAKLMSFPEAI 193 (258)
T ss_dssp HH-CCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HH-cCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----------------CcccHHHHHHHHHHHHHhCCHHHHH
Confidence 99 677 46789999999999999999999999999998 3446789999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 464 RCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 464 ~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+|++++.++|+++.+|..+|.++.
T Consensus 194 ~~~~~al~~~~~~~~~~~~l~~~~~ 218 (258)
T 3uq3_A 194 ADCNKAIEKDPNFVRAYIRKATAQI 218 (258)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.83 E-value=2.8e-19 Score=183.78 Aligned_cols=200 Identities=16% Similarity=0.059 Sum_probs=155.5
Q ss_pred hhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccC
Q 003047 143 FDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQ 222 (854)
Q Consensus 143 ~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~ 222 (854)
|.++..++++|.+++..|+|++|+..|+++++.-+...+ +++.++.+|...|++++|+ ..|++++.+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-----a~~~lg~~~~~~g~~~~A~---~~~~~al~~~---- 69 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPE-----ALYWLARTQLKLGLVNPAL---ENGKTLVART---- 69 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH-----HHHHHHHHHHHTTCHHHHH---HHHHHHHHHC----
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCCHHHHH---HHHHHHHHhC----
Confidence 456779999999999999999999999999995444333 5888999999999999998 5778888764
Q ss_pred CCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCcc
Q 003047 223 VDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSS 302 (854)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (854)
|+. .. ++
T Consensus 70 P~~------------------------------~~-------------------------------------------a~ 76 (217)
T 2pl2_A 70 PRY------------------------------LG-------------------------------------------GY 76 (217)
T ss_dssp TTC------------------------------HH-------------------------------------------HH
T ss_pred CCc------------------------------HH-------------------------------------------HH
Confidence 211 00 11
Q ss_pred chhhhhhhhcccchhHHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhc
Q 003047 303 NELSRTLVDRSISTVDLKLKLQLYKVRFLLLT-----------RNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARR 371 (854)
Q Consensus 303 ~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~-----------~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g 371 (854)
.+ .+.+|..+ |++++|+..+++++.++ |+++.+++.+|.++...|
T Consensus 77 ~~----------------------lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g 132 (217)
T 2pl2_A 77 MV----------------------LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLG 132 (217)
T ss_dssp HH----------------------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HH----------------------HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcC
Confidence 22 23344444 99999999999999999 999999999999999999
Q ss_pred CHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHH
Q 003047 372 NHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGL 451 (854)
Q Consensus 372 ~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~ 451 (854)
++++|++.|++++. .+ ..+.+++++|.+|..+|++++|+.+|++++.. .|.+..+++++|.
T Consensus 133 ~~~~A~~~~~~al~-~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~~~~~la~ 193 (217)
T 2pl2_A 133 ERDKAEASLKQALA-LE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ----------------APKDLDLRVRYAS 193 (217)
T ss_dssp CHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh-cc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCChHHHHHHHH
Confidence 99999999999999 55 35789999999999999999999999999998 3556789999999
Q ss_pred HHHHCCCcHHHHHHHHHHH
Q 003047 452 QYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 452 ~ll~~Gk~eeAl~~y~kAL 470 (854)
++...|++++|+.+|+++-
T Consensus 194 ~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 194 ALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHTC---------------
T ss_pred HHHHccCHHHHHHHHHHHh
Confidence 9999999999999999864
No 40
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.83 E-value=1.9e-18 Score=183.23 Aligned_cols=294 Identities=14% Similarity=0.074 Sum_probs=224.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS----LALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSM 394 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~----~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~ 394 (854)
..+.++.++...|++++|+..+++++... |+++ .+++.+|.+++..|++++|++++++++.. .++...+.
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34557999999999999999999999999 9994 67889999999999999999999998873 12223467
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC----------------
Q 003047 395 FNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK---------------- 458 (854)
Q Consensus 395 ~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk---------------- 458 (854)
++..+|.+|..+|++++|+.+|++++...+.... ......+++++|.++...|+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND----------KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPED 154 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC----------chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhh
Confidence 8899999999999999999999999998554321 01235688999999999999
Q ss_pred ----cHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCc
Q 003047 459 ----PVLAARCFQKSSLVF------YKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFR 528 (854)
Q Consensus 459 ----~eeAl~~y~kAL~l~------P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~ 528 (854)
+++|+.+|++++.+. |..+.+|..+|.++.. .+
T Consensus 155 a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~---~~---------------------------------- 197 (338)
T 3ro2_A 155 VRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL---LG---------------------------------- 197 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---HT----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH---hC----------------------------------
Confidence 999999999999873 3445578888887772 10
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccccccccccc
Q 003047 529 KNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLD 608 (854)
Q Consensus 529 ~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (854)
.++.|..+|++|+.+.+.....
T Consensus 198 -----------------------~~~~A~~~~~~a~~~~~~~~~~----------------------------------- 219 (338)
T 3ro2_A 198 -----------------------NFRDAVIAHEQRLLIAKEFGDK----------------------------------- 219 (338)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHTCH-----------------------------------
T ss_pred -----------------------CHHHHHHHHHHHHHHHHhcCCh-----------------------------------
Confidence 2467999999999887763210
Q ss_pred ccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCC
Q 003047 609 SKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPD 687 (854)
Q Consensus 609 ~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~ 687 (854)
.....++..+|.++...|++.+|+.++++++. .+.
T Consensus 220 --------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 255 (338)
T 3ro2_A 220 --------------------------------------------AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 255 (338)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 00113577889999999999999999999986 222
Q ss_pred C-hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCC
Q 003047 688 C-SRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSR 766 (854)
Q Consensus 688 ~-~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~ 766 (854)
. .......+....+.++..+|++++|+.++++++. .. ... . .+
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~---------------~~~---~---------------~~- 299 (338)
T 3ro2_A 256 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA--IA---------------QEL---K---------------DR- 299 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HH---------------HHH---T---------------CH-
T ss_pred hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HH---------------Hhc---C---------------Cc-
Confidence 2 1222233334455567789999999999999993 10 000 0 00
Q ss_pred CCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 767 DTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 767 ~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
...+.++.+||.++..+|++++|.+++++++.+.+..
T Consensus 300 --------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 300 --------IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp --------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred --------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 1157788999999999999999999999999987643
No 41
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.82 E-value=1.8e-18 Score=191.90 Aligned_cols=293 Identities=14% Similarity=0.065 Sum_probs=228.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHhhhc----c-CCCccH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS----LALFLKSQLEYARRNHRKAIKLLLALSNR----T-EMGISS 393 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~----~a~~lla~ly~~~g~~~kAl~~l~kal~~----~-dp~~~a 393 (854)
..+..+..+...|++++|++.+++++.+. |+++ .+++.+|.+|+..|++++|+++|++++.. . .| ...
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~ 126 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL-GEA 126 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH-HHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch-HHH
Confidence 34467899999999999999999999999 9997 57899999999999999999999999873 1 34 457
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC---------------
Q 003047 394 MFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK--------------- 458 (854)
Q Consensus 394 ~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk--------------- 458 (854)
.+++++|.+|..+|++++|+.+|++++...+.... .+....+++++|.+|...|+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~ 196 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGD----------RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVK 196 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc----------hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhh
Confidence 78999999999999999999999999998544321 12346789999999999999
Q ss_pred --cHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCC
Q 003047 459 --PVLAARCFQKSSLVFY------KQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKN 530 (854)
Q Consensus 459 --~eeAl~~y~kAL~l~P------~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~ 530 (854)
+++|+.+|++++.+.+ ....+|..+|.++. ..+
T Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~---~~g------------------------------------ 237 (411)
T 4a1s_A 197 EALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYY---LLG------------------------------------ 237 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH---HTT------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---HcC------------------------------------
Confidence 9999999999998863 33457888888877 210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccccccccccccc
Q 003047 531 GHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSK 610 (854)
Q Consensus 531 ~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (854)
.++.|..+|++|+.+.|.....
T Consensus 238 ---------------------~~~~A~~~~~~al~~~~~~~~~------------------------------------- 259 (411)
T 4a1s_A 238 ---------------------DFQAAIEHHQERLRIAREFGDR------------------------------------- 259 (411)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHHHHTCH-------------------------------------
T ss_pred ---------------------ChHHHHHHHHHHHHHHHhcCCc-------------------------------------
Confidence 2477999999999998873210
Q ss_pred ccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCC-
Q 003047 611 ISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDC- 688 (854)
Q Consensus 611 ~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~- 688 (854)
.....++..+|.++..+|++.+|+.++++++. .+..
T Consensus 260 ------------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 297 (411)
T 4a1s_A 260 ------------------------------------------AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297 (411)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ------------------------------------------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 01124577889999999999999999999996 3322
Q ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCC
Q 003047 689 SRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDT 768 (854)
Q Consensus 689 ~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~ 768 (854)
...........++.++..+|++++|+.++++++. .. . .. +. +
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~-----------~----~~---~~---------------~--- 339 (411)
T 4a1s_A 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA--IA-----------Q----EL---GD---------------R--- 339 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HH-----------H----HH---TC---------------H---
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HH-----------H----HC---CC---------------h---
Confidence 1112222333445566689999999999999993 10 0 00 00 0
Q ss_pred CCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 769 MFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 769 ~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
...+.++.+||.+|..+|++++|.+++++++++.+..
T Consensus 340 ------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 340 ------IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp ------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred ------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 1157789999999999999999999999999997644
No 42
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=6.2e-17 Score=188.03 Aligned_cols=437 Identities=9% Similarity=-0.050 Sum_probs=294.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccCCCCCCCccccc
Q 003047 49 LLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQ 128 (854)
Q Consensus 49 ~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 128 (854)
+|+++++.+|.+..+|..++.. ... .++.++...+.+++.
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~--~~~-----~~~~~a~~~~e~al~--------------------------------- 40 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIRE--AQN-----QPIDKARKTYERLVA--------------------------------- 40 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHH--HHS-----SCHHHHHHHHHHHHT---------------------------------
T ss_pred ChhhHhhhCCCCHHHHHHHHHH--HHh-----CCHHHHHHHHHHHHH---------------------------------
Confidence 3688899999999999998853 322 234445666666662
Q ss_pred ccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHH-HHHHHccCHHHHHH-
Q 003047 129 VSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLL-DVALACHDAFRSAD- 206 (854)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~-~vy~~~~~~~kA~~- 206 (854)
. .|.+..+|+..+..+...|++++|..+|+++++..+ ..+ +.+.++ .+....|++++|.+
T Consensus 41 -----------~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~-----lw~~~~~~~~~~~~~~~~a~~~ 102 (530)
T 2ooe_A 41 -----------Q-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HID-----LWKCYLSYVRETKGKLPSYKEK 102 (530)
T ss_dssp -----------T-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHH-----HHHHHHHHHHHHTTTSTTHHHH
T ss_pred -----------H-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChH-----HHHHHHHHHHHHccchhhHHHH
Confidence 1 566788999999999999999999999999999764 222 344444 45556788888875
Q ss_pred HHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh
Q 003047 207 VLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSS 286 (854)
Q Consensus 207 ~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (854)
+...|++++... ..+++ ....|.. .+.|+...
T Consensus 103 ~~~~~~~al~~~-g~~~~-------------------------------~~~~w~~------------~~~~~~~~---- 134 (530)
T 2ooe_A 103 MAQAYDFALDKI-GMEIM-------------------------------SYQIWVD------------YINFLKGV---- 134 (530)
T ss_dssp HHHHHHHHHHHT-TTSTT-------------------------------CHHHHHH------------HHHHHHHS----
T ss_pred HHHHHHHHHHHC-CCCcc-------------------------------cHHHHHH------------HHHHHhcC----
Confidence 223566665431 00000 0001110 00011000
Q ss_pred hccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHH--HHHHHH
Q 003047 287 LEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSL--ALFLKS 364 (854)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~--a~~lla 364 (854)
. . .+ .+..+|++++|...+++++. . |.+.. .+....
T Consensus 135 -----~----~------------------~~------------~~~~~~~~~~a~~~y~~al~-~--P~~~~~~~~~~~~ 172 (530)
T 2ooe_A 135 -----E----A------------------VG------------SYAENQRITAVRRVYQRGCV-N--PMINIEQLWRDYN 172 (530)
T ss_dssp -----C----C------------------CS------------STTHHHHHHHHHHHHHHHTT-S--CCTTHHHHHHHHH
T ss_pred -----C----C------------------cc------------cHHHHhHHHHHHHHHHHHHh-c--hhhhHHHHHHHHH
Confidence 0 0 00 00125788899999999999 5 65432 221111
Q ss_pred HHH-------------HHhcCHHHHHHHHHH------hhhc----cCCCc------cHHHHHHHHHHHHH----cCCH--
Q 003047 365 QLE-------------YARRNHRKAIKLLLA------LSNR----TEMGI------SSMFNNNLGCIYYQ----LAKY-- 409 (854)
Q Consensus 365 ~ly-------------~~~g~~~kAl~~l~k------al~~----~dp~~------~a~~~nnLG~iy~~----~g~~-- 409 (854)
.+. ...++|.+|...|.. .+.. ..|.. ....|......... .++.
T Consensus 173 ~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~ 252 (530)
T 2ooe_A 173 KYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTL 252 (530)
T ss_dssp HHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHH
T ss_pred HHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchh
Confidence 211 235678899888876 3331 12321 02344333222222 1232
Q ss_pred --HHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHH-------CCCcH-------HHHHHHHHHHH-h
Q 003047 410 --HTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLA-------CGKPV-------LAARCFQKSSL-V 472 (854)
Q Consensus 410 --~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~-------~Gk~e-------eAl~~y~kAL~-l 472 (854)
..++..|+++|.. .|..+.+|+++|..+.. .|+++ +|+.+|++++. +
T Consensus 253 ~~~~a~~~y~~al~~----------------~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~ 316 (530)
T 2ooe_A 253 ITKRVMFAYEQCLLV----------------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 316 (530)
T ss_dssp HHHHHHHHHHHHHHH----------------HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh
Confidence 4888999999998 34568999999999987 79987 99999999997 8
Q ss_pred cCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCC
Q 003047 473 FYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLS 552 (854)
Q Consensus 473 ~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~s 552 (854)
.|+++.+|..+|.++. +.+ .
T Consensus 317 ~p~~~~l~~~~~~~~~---~~g---------------------------------------------------------~ 336 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEE---SRM---------------------------------------------------------K 336 (530)
T ss_dssp CSSCHHHHHHHHHHHH---HTT---------------------------------------------------------C
T ss_pred CcccHHHHHHHHHHHH---hcC---------------------------------------------------------C
Confidence 9999999999998776 210 2
Q ss_pred hHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCch
Q 003047 553 MPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTS 632 (854)
Q Consensus 553 l~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~ 632 (854)
++.|+.+|++|+.+.|....
T Consensus 337 ~~~A~~~~~~al~~~p~~~~------------------------------------------------------------ 356 (530)
T 2ooe_A 337 YEKVHSIYNRLLAIEDIDPT------------------------------------------------------------ 356 (530)
T ss_dssp HHHHHHHHHHHHHSSSSCHH------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCccccCch------------------------------------------------------------
Confidence 47799999999998665321
Q ss_pred hHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHHHhcCCHH
Q 003047 633 LEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLELPD-CSRIYIFLGHIYAAEALCLLNRPK 711 (854)
Q Consensus 633 ~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~p~-~~~~~~~la~lY~aeAl~~lgr~~ 711 (854)
.++..++.++...|++.+|+.++++++..|+ ....+...+.+. +...|+++
T Consensus 357 ------------------------~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~----~~~~~~~~ 408 (530)
T 2ooe_A 357 ------------------------LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME----YYCSKDKS 408 (530)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHH----HHHTCCHH
T ss_pred ------------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHH----HHHcCChh
Confidence 1245567778889999999999999998655 344443322211 12589999
Q ss_pred HHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHc
Q 003047 712 EAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQ 791 (854)
Q Consensus 712 eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~ 791 (854)
+|+.+|++++. . .|. .+.++.+++.++...
T Consensus 409 ~A~~~~e~al~--~--------------------------------------~p~----------~~~~~~~~~~~~~~~ 438 (530)
T 2ooe_A 409 VAFKIFELGLK--K--------------------------------------YGD----------IPEYVLAYIDYLSHL 438 (530)
T ss_dssp HHHHHHHHHHH--H--------------------------------------HTT----------CHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHH--H--------------------------------------CCC----------CHHHHHHHHHHHHhC
Confidence 99999999993 1 032 467889999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHh-cCCCcccccc
Q 003047 792 GEFERAHHFVTQALSILPRSTE----ATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLPSG 847 (854)
Q Consensus 792 g~~e~A~~~~~~Al~~~P~~~~----a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~~ 847 (854)
|++++|..+|++++...|.++. ++...+-.+...|+.+.+..+.++ .+..|.++.|
T Consensus 439 g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~~~ 499 (530)
T 2ooe_A 439 NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 499 (530)
T ss_dssp TCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHHTT
T ss_pred CCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhccC
Confidence 9999999999999998776543 565667778899999999999988 6777765544
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.81 E-value=1.3e-18 Score=177.70 Aligned_cols=217 Identities=10% Similarity=0.021 Sum_probs=167.9
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCC
Q 003047 145 VSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVD 224 (854)
Q Consensus 145 ~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~ 224 (854)
.+..++++|.+++..|+|++|+++|+++++..+... .+++.++.+|...|++++|+ ..+++++.+. ++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~la~~~~~~~~~~~A~---~~~~~~~~~~----~~ 89 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA-----IPYINFANLLSSVNELERAL---AFYDKALELD----SS 89 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCH-----HHHHHHHHHHHHTTCHHHHH---HHHHHHHHHC----TT
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHcCCHHHHH---HHHHHHHHcC----Cc
Confidence 567899999999999999999999999999543322 36788899999999999998 4667776543 10
Q ss_pred CCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccch
Q 003047 225 SGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNE 304 (854)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (854)
.
T Consensus 90 ~------------------------------------------------------------------------------- 90 (243)
T 2q7f_A 90 A------------------------------------------------------------------------------- 90 (243)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 003047 305 LSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALS 384 (854)
Q Consensus 305 ~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal 384 (854)
.......+.+|...|++++|++.+++++... |++..+++.+|.++...|++++|+++|++++
T Consensus 91 ----------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 152 (243)
T 2q7f_A 91 ----------------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAV 152 (243)
T ss_dssp ----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 0123345778889999999999999999999 9999999999999999999999999999999
Q ss_pred hccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHH
Q 003047 385 NRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAAR 464 (854)
Q Consensus 385 ~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~ 464 (854)
. ..|. ...++..+|.+|...|++++|+.+|++++.. .+....+++++|.++...|++++|+.
T Consensus 153 ~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~ 214 (243)
T 2q7f_A 153 E-LNEN-DTEARFQFGMCLANEGMLDEALSQFAAVTEQ----------------DPGHADAFYNAGVTYAYKENREKALE 214 (243)
T ss_dssp H-HCTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCTTHHHH
T ss_pred H-hCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CcccHHHHHHHHHHHHHccCHHHHHH
Confidence 9 6774 5788999999999999999999999999998 23457889999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 465 CFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 465 ~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+|++++.++|+++.+|..++.+..
T Consensus 215 ~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 215 MLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHHHHHccCcchHHHHHHHHHHHh
Confidence 999999999999999999886544
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.81 E-value=4.4e-18 Score=175.70 Aligned_cols=215 Identities=8% Similarity=-0.070 Sum_probs=184.3
Q ss_pred chhh-HHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccc
Q 003047 142 EFDV-SVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCV 220 (854)
Q Consensus 142 ~~~~-~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~ 220 (854)
+|++ +..++++|.+|+..|+|++|+++|+++++..+... .+++.++.+|...|++++|+ ..+++++.+.
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~~~~~~A~---~~~~~a~~~~-- 101 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA-----DAHAALAVVFQTEMEPKLAD---EEYRKALASD-- 101 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHHHHH---HHHHHHHHHC--
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH-----HHHHHHHHHHHHcCCHHHHH---HHHHHHHHHC--
Confidence 5665 88999999999999999999999999999543322 36788899999999999998 4667776543
Q ss_pred cCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCC
Q 003047 221 NQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGL 300 (854)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (854)
++.
T Consensus 102 --~~~--------------------------------------------------------------------------- 104 (252)
T 2ho1_A 102 --SRN--------------------------------------------------------------------------- 104 (252)
T ss_dssp --TTC---------------------------------------------------------------------------
T ss_pred --cCc---------------------------------------------------------------------------
Confidence 100
Q ss_pred ccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hcCCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 003047 301 SSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMN--IARGKDSSLALFLKSQLEYARRNHRKAIK 378 (854)
Q Consensus 301 ~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~--~~~~P~~~~a~~lla~ly~~~g~~~kAl~ 378 (854)
.......+.+|...|++++|++.+++++. .. |.+..+++.+|.++...|++++|++
T Consensus 105 --------------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 105 --------------------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY--PERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTC--TTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccC--cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 01223357788889999999999999999 77 9999999999999999999999999
Q ss_pred HHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC
Q 003047 379 LLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK 458 (854)
Q Consensus 379 ~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk 458 (854)
+|++++. ..|. ...++..+|.+|..+|++++|+.+|++++.. .+.....+..++.++...|+
T Consensus 163 ~~~~~~~-~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~g~ 224 (252)
T 2ho1_A 163 YFEKSLR-LNRN-QPSVALEMADLLYKEREYVPARQYYDLFAQG----------------GGQNARSLLLGIRLAKVFED 224 (252)
T ss_dssp HHHHHHH-HCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----------------SCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHh-cCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CcCcHHHHHHHHHHHHHccC
Confidence 9999999 6784 5788999999999999999999999999987 24456788999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCHHHHHHH
Q 003047 459 PVLAARCFQKSSLVFYKQPLLWLRL 483 (854)
Q Consensus 459 ~eeAl~~y~kAL~l~P~~~~aw~~L 483 (854)
+++|..+|++++.++|+++.++..+
T Consensus 225 ~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 225 RDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 9999999999999999999987654
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.81 E-value=8.1e-19 Score=173.37 Aligned_cols=124 Identities=16% Similarity=0.103 Sum_probs=74.5
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHH
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSS 413 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi 413 (854)
.|++++|+..+++++... |+++.++..+|.++...+++++|++.+.+++. .+|. ...++..+|.+|..+|++++|+
T Consensus 52 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~-~~~~-~~~~~~~lg~~~~~~g~~~~A~ 127 (184)
T 3vtx_A 52 IGLPNDAIESLKKFVVLD--TTSAEAYYILGSANFMIDEKQAAIDALQRAIA-LNTV-YADAYYKLGLVYDSMGEHDKAI 127 (184)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcc-chHHHHHHHHHHHHhCCchhHH
Confidence 333333333344444444 55566666666666666666666666666666 4553 4556666666666666666666
Q ss_pred HHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH
Q 003047 414 VFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 414 ~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
.+|++++++ .|....+|+++|.+|..+|++++|+.+|+++++++|+++
T Consensus 128 ~~~~~~l~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 128 EAYEKTISI----------------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHh----------------cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 666666665 233456666666666666666666666666666666553
No 46
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.80 E-value=6.5e-18 Score=187.28 Aligned_cols=246 Identities=12% Similarity=0.025 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--cC---CCcc
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARG----KDSSLALFLKSQLEYARRNHRKAIKLLLALSNR--TE---MGIS 392 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~----P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~--~d---p~~~ 392 (854)
...++++.++...|++++|++.+++++.+... |....+++.+|.+|...|++++|++++++++.. .. +...
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 46677999999999999999999999998310 335678999999999999999999999999983 11 1124
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
+.+++++|.+|..+|++++|+.+|++|+.+.+.... .+....+++++|.+|..+|++++|+.+|++++.+
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ----------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999999999998554321 1123568999999999999999999999999994
Q ss_pred -----c-CCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCC
Q 003047 473 -----F-YKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSD 546 (854)
Q Consensus 473 -----~-P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~ 546 (854)
+ |..+.++.++|.++. ..+
T Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~---~~g---------------------------------------------------- 278 (383)
T 3ulq_A 254 FEESNILPSLPQAYFLITQIHY---KLG---------------------------------------------------- 278 (383)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHH---HTT----------------------------------------------------
T ss_pred HHhhccchhHHHHHHHHHHHHH---HCC----------------------------------------------------
Confidence 5 778889999999988 221
Q ss_pred CCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCccc
Q 003047 547 GQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKD 626 (854)
Q Consensus 547 ~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~ 626 (854)
.++.|..+|++|+.+.+.....
T Consensus 279 -----~~~~A~~~~~~al~~~~~~~~~----------------------------------------------------- 300 (383)
T 3ulq_A 279 -----KIDKAHEYHSKGMAYSQKAGDV----------------------------------------------------- 300 (383)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHTCH-----------------------------------------------------
T ss_pred -----CHHHHHHHHHHHHHHHHHcCCH-----------------------------------------------------
Confidence 2477999999999987762210
Q ss_pred ccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH
Q 003047 627 QKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMEN---PVKALAAARSLLELPDCSRIYIFLGHIYAAEA 703 (854)
Q Consensus 627 ~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~---~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeA 703 (854)
... ..+..++.++...|+ +.+|+..+++.-..+.....+..+|.+
T Consensus 301 -------~~~--------------------~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~----- 348 (383)
T 3ulq_A 301 -------IYL--------------------SEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY----- 348 (383)
T ss_dssp -------HHH--------------------HHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----
T ss_pred -------HHH--------------------HHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH-----
Confidence 000 114567889999999 788888887774344445566666654
Q ss_pred HHhcCCHHHHHHHHHhhhc
Q 003047 704 LCLLNRPKEAAEHFSMYLS 722 (854)
Q Consensus 704 l~~lgr~~eAl~~l~~~l~ 722 (854)
+..+|++++|+.++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5578999999999999984
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.80 E-value=2.6e-17 Score=173.31 Aligned_cols=237 Identities=17% Similarity=0.077 Sum_probs=198.1
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhchhcccC
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ----LAKYHTSSVFLSKALSNSASLRKD 429 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~----~g~~~eAi~~f~kAL~~~~~l~~~ 429 (854)
|+++.+++.+|.+++..|++++|+++|++++. | ..+.+++++|.+|.. .+++++|+.+|++++..
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------- 71 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD---L-KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL------- 71 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---T-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---C-CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-------
Confidence 88999999999999999999999999999998 3 246789999999999 99999999999999997
Q ss_pred CccccccccCCccHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCC
Q 003047 430 KPLKLLTFSQDKSLLITYNCGLQYLA----CGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDG 505 (854)
Q Consensus 430 ~~l~~~~~~~~~~~~~~~nLG~~ll~----~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~ 505 (854)
....+++++|.+|.. .+++++|+.+|++++.. +++.+|++||.++. ...
T Consensus 72 -----------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~---~~~----------- 124 (273)
T 1ouv_A 72 -----------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYH---DGK----------- 124 (273)
T ss_dssp -----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH---HCS-----------
T ss_pred -----------CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHH---cCC-----------
Confidence 146899999999999 99999999999999988 58999999999887 210
Q ss_pred cccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcc
Q 003047 506 SEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSV 585 (854)
Q Consensus 506 ~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~ 585 (854)
+ . ...++.|..+|++|+.+.+ .
T Consensus 125 ----------~---------------~-----------------~~~~~~A~~~~~~a~~~~~--~-------------- 146 (273)
T 1ouv_A 125 ----------V---------------V-----------------TRDFKKAVEYFTKACDLND--G-------------- 146 (273)
T ss_dssp ----------S---------------S-----------------CCCHHHHHHHHHHHHHTTC--H--------------
T ss_pred ----------C---------------c-----------------ccCHHHHHHHHHHHHhcCc--H--------------
Confidence 0 0 0135889999999997541 1
Q ss_pred cccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHH
Q 003047 586 EESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYV 665 (854)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v 665 (854)
.++..+|.+
T Consensus 147 -----------------------------------------------------------------------~a~~~lg~~ 155 (273)
T 1ouv_A 147 -----------------------------------------------------------------------DGCTILGSL 155 (273)
T ss_dssp -----------------------------------------------------------------------HHHHHHHHH
T ss_pred -----------------------------------------------------------------------HHHHHHHHH
Confidence 124567888
Q ss_pred HHH----cCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHhhhcCCCCCCCCCCchhhh
Q 003047 666 ELE----MENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCL----LNRPKEAAEHFSMYLSGGDNFDLPFSGEDCE 737 (854)
Q Consensus 666 ~l~----lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~----lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~ 737 (854)
+.. .+++.+|+.++++++... .+.++..+|.+|. . .+++++|+.+|++++. .+
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~-----~g~~~~~~~~~A~~~~~~a~~--~~----------- 216 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK-DSPGCFNAGNMYH-----HGEGATKNFKEALARYSKACE--LE----------- 216 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH-----HTCSSCCCHHHHHHHHHHHHH--TT-----------
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-----cCCCCCccHHHHHHHHHHHHh--CC-----------
Confidence 888 999999999999999863 5678888887665 6 7999999999999993 11
Q ss_pred hhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHH
Q 003047 738 QWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAM----QGEFERAHHFVTQALSILPRSTE 813 (854)
Q Consensus 738 ~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~----~g~~e~A~~~~~~Al~~~P~~~~ 813 (854)
.+.++++||.+|.. .+++++|.+++++|+++.|+.+.
T Consensus 217 ---------------------------------------~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 217 ---------------------------------------NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred ---------------------------------------CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 25678999999999 99999999999999999887654
Q ss_pred HH
Q 003047 814 AT 815 (854)
Q Consensus 814 a~ 815 (854)
..
T Consensus 258 ~~ 259 (273)
T 1ouv_A 258 DI 259 (273)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.79 E-value=8.5e-18 Score=174.97 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003047 777 RGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKL 835 (854)
Q Consensus 777 ~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~l 835 (854)
.+.+++++|.++..+|++++|..++++++.+.|++.... +.++..+|++++|+..+
T Consensus 214 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred ccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 367788888888888888888888888888888664332 45566788888888776
No 49
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.79 E-value=7.3e-17 Score=178.80 Aligned_cols=311 Identities=11% Similarity=0.036 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHH--HHHHHHHHH--HhCCCChh--------HHHHHHHH
Q 003047 25 SVTATLAKEAALYFQSRKFDECLDLLKQLLDK---KPDDPKIL--HNIAIAEYF--RDGCTDPK--------KLLEALNN 89 (854)
Q Consensus 25 ~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~---~~~~~~~l--~nla~~~~~--~~~~~~~~--------~~~~~l~~ 89 (854)
++...++-+...++.++++++|..+++++.+. -+.|..++ +.+....+. .+.+.... .+.+.+..
T Consensus 10 ~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 89 (383)
T 3ulq_A 10 SSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLE 89 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHH
Confidence 56788899999999999999999999999874 22455544 444332221 11111111 00011121
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHH
Q 003047 90 VKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVL 169 (854)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~ 169 (854)
+..... ..+..-....++.+|.+++..|+|++|+++|
T Consensus 90 i~~~~~-------------------------------------------~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~ 126 (383)
T 3ulq_A 90 IDKKQA-------------------------------------------RLTGLLEYYFNFFRGMYELDQREYLSAIKFF 126 (383)
T ss_dssp HHHHTH-------------------------------------------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCC-------------------------------------------CchhHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 111100 0011223445667899999999999999999
Q ss_pred HHhhhccCCCchhh-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcc
Q 003047 170 EPLYQNIEPIDETT-ALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSST 248 (854)
Q Consensus 170 e~l~~~~~~~~e~~-~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (854)
+++++..+.+.+.. ...+++.++.+|...|++++|+ .++++++.+.......
T Consensus 127 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~---~~~~~al~~~~~~~~~------------------------ 179 (383)
T 3ulq_A 127 KKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSM---DYARQAYEIYKEHEAY------------------------ 179 (383)
T ss_dssp HHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHH---HHHHHHHHHHHTCSTT------------------------
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHHHHhCccc------------------------
Confidence 99999877666553 4567888999999999999998 6889988775221000
Q ss_pred cccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHH
Q 003047 249 ADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKV 328 (854)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~ 328 (854)
. . .........+
T Consensus 180 -------~-----------------------~--------------------------------------~~~~~~~~lg 191 (383)
T 3ulq_A 180 -------N-----------------------I--------------------------------------RLLQCHSLFA 191 (383)
T ss_dssp -------H-----------------------H--------------------------------------HHHHHHHHHH
T ss_pred -------h-----------------------H--------------------------------------HHHHHHHHHH
Confidence 0 0 0011223346
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cC-CCccHHHHH
Q 003047 329 RFLLLTRNLKHAKREVKLAMNIARGKDSS------LALFLKSQLEYARRNHRKAIKLLLALSNR----TE-MGISSMFNN 397 (854)
Q Consensus 329 ~lyl~~~~~~~A~~elk~al~~~~~P~~~------~a~~lla~ly~~~g~~~kAl~~l~kal~~----~d-p~~~a~~~n 397 (854)
.+|...|++++|++.+++++.+. |+.. .+++.+|.+|...|++++|+++|++++.. .+ | ..+.+++
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~ 268 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMA--EAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP-SLPQAYF 268 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG-GHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHH--HHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch-hHHHHHH
Confidence 67778899999999999999997 5432 58899999999999999999999999983 24 5 4588899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHhcC
Q 003047 398 NLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK---PVLAARCFQKSSLVFY 474 (854)
Q Consensus 398 nLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk---~eeAl~~y~kAL~l~P 474 (854)
++|.+|..+|++++|+.+|++++.+.+... .+.....+.++|.++...|+ +++|+..+++. ...|
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~ 336 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAG-----------DVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYA 336 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHH
Confidence 999999999999999999999999854332 11122336789999999999 88888888886 4555
Q ss_pred CCHHHHHHHHHHHH
Q 003047 475 KQPLLWLRLAECCL 488 (854)
Q Consensus 475 ~~~~aw~~La~~~i 488 (854)
....++..||.++.
T Consensus 337 ~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 337 DLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56678888898877
No 50
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.79 E-value=3.7e-18 Score=196.80 Aligned_cols=227 Identities=15% Similarity=0.059 Sum_probs=193.2
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCH-HHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHH
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNH-RKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTS 412 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~-~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eA 412 (854)
.+.+++++..++...... |+++.+++.+|.++...|+| ++|+++|+++++ .+|. .+.+|+++|.+|..+|++++|
T Consensus 81 ~~~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~-~~p~-~~~a~~~lg~~~~~~g~~~~A 156 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK-LEPE-LVEAWNQLGEVYWKKGDVTSA 156 (474)
T ss_dssp HHHHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 345778888899989999 99999999999999999999 999999999999 7884 688999999999999999999
Q ss_pred HHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHC---------CCcHHHHHHHHHHHHhcCCCHHHHHHH
Q 003047 413 SVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC---------GKPVLAARCFQKSSLVFYKQPLLWLRL 483 (854)
Q Consensus 413 i~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~---------Gk~eeAl~~y~kAL~l~P~~~~aw~~L 483 (854)
+.+|++++.+ .+ ...+++++|.+|... |++++|+.+|+++++++|+++.+|++|
T Consensus 157 ~~~~~~al~~----------------~p-~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 219 (474)
T 4abn_A 157 HTCFSGALTH----------------CK-NKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYIL 219 (474)
T ss_dssp HHHHHHHHTT----------------CC-CHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhh----------------CC-CHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999998 22 368999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 003047 484 AECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNA 563 (854)
Q Consensus 484 a~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nA 563 (854)
|.++....-.. | . ....++.|+.+|++|
T Consensus 220 g~~~~~~~~~~-------------------~-----------------~----------------~~g~~~~A~~~~~~a 247 (474)
T 4abn_A 220 GNAYLSLYFNT-------------------G-----------------Q----------------NPKISQQALSAYAQA 247 (474)
T ss_dssp HHHHHHHHHHT-------------------T-----------------C----------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-------------------c-----------------c----------------ccchHHHHHHHHHHH
Confidence 99998531110 0 0 001368899999999
Q ss_pred HhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccch
Q 003047 564 LHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYY 643 (854)
Q Consensus 564 L~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~ 643 (854)
+.+.|.....
T Consensus 248 l~~~p~~~~~---------------------------------------------------------------------- 257 (474)
T 4abn_A 248 EKVDRKASSN---------------------------------------------------------------------- 257 (474)
T ss_dssp HHHCGGGGGC----------------------------------------------------------------------
T ss_pred HHhCCCcccC----------------------------------------------------------------------
Confidence 9998841100
Q ss_pred hhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 003047 644 EDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMY 720 (854)
Q Consensus 644 ~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~ 720 (854)
..++.++|.++..+|++.+|+.++++++. .|+++.++..++.++. .+|++++|++.+.+.
T Consensus 258 ------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~-----~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 258 ------------PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLE-----FLSRLTSLLESKGKT 318 (474)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-----HHHHHHHHHHHTTTC
T ss_pred ------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HHHHHHHHHHHhccc
Confidence 02467889999999999999999999998 8999999988887554 689999999877553
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.78 E-value=1.4e-17 Score=170.07 Aligned_cols=214 Identities=13% Similarity=0.042 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHH
Q 003047 321 LKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLG 400 (854)
Q Consensus 321 ~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG 400 (854)
....+.++.++...|++++|+..+++++... |++..+++.+|.++...|++++|+++|++++. .+|. ...++..+|
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~la 98 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALE-LDSS-AATAYYGAG 98 (243)
T ss_dssp -------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCc-chHHHHHHH
Confidence 3455567888899999999999999999999 99999999999999999999999999999999 6784 678999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHH
Q 003047 401 CIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLW 480 (854)
Q Consensus 401 ~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw 480 (854)
.+|..+|++++|+.+|++++.. .+....+++++|.++...|++++|+.+|++++.+.|+++.+|
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 162 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRA----------------GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEAR 162 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH----------------TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHH
Confidence 9999999999999999999998 234578899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 003047 481 LRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCL 560 (854)
Q Consensus 481 ~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l 560 (854)
..+|.++.. .+ .++.|..+|
T Consensus 163 ~~l~~~~~~---~~---------------------------------------------------------~~~~A~~~~ 182 (243)
T 2q7f_A 163 FQFGMCLAN---EG---------------------------------------------------------MLDEALSQF 182 (243)
T ss_dssp HHHHHHHHH---HT---------------------------------------------------------CCHHHHHHH
T ss_pred HHHHHHHHH---cC---------------------------------------------------------CHHHHHHHH
Confidence 999999883 21 126699999
Q ss_pred HHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhc
Q 003047 561 LNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSL 640 (854)
Q Consensus 561 ~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i 640 (854)
++++.+.|...
T Consensus 183 ~~~~~~~~~~~--------------------------------------------------------------------- 193 (243)
T 2q7f_A 183 AAVTEQDPGHA--------------------------------------------------------------------- 193 (243)
T ss_dssp HHHHHHCTTCH---------------------------------------------------------------------
T ss_pred HHHHHhCcccH---------------------------------------------------------------------
Confidence 99999887632
Q ss_pred cchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHH
Q 003047 641 SYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIY 699 (854)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY 699 (854)
.++..+|.++..+|++.+|+.++++++. .|+.+.++..++.+.
T Consensus 194 ----------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 194 ----------------DAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp ----------------HHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred ----------------HHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 1256778899999999999999999997 888888887777654
No 52
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=3.6e-15 Score=173.14 Aligned_cols=224 Identities=12% Similarity=0.059 Sum_probs=177.6
Q ss_pred HHHHHHHHHhhhccCCCccHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hchhcccCCcccccccc
Q 003047 374 RKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ-------LAKYH-------TSSVFLSKALS-NSASLRKDKPLKLLTFS 438 (854)
Q Consensus 374 ~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~-------~g~~~-------eAi~~f~kAL~-~~~~l~~~~~l~~~~~~ 438 (854)
++|+.+|++++. ..|. .+.+|.++|.++.+ .|+++ +|+..|++|+. .
T Consensus 255 ~~a~~~y~~al~-~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~---------------- 316 (530)
T 2ooe_A 255 KRVMFAYEQCLL-VLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL---------------- 316 (530)
T ss_dssp HHHHHHHHHHHH-HHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT----------------
T ss_pred HHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh----------------
Confidence 588999999999 7884 68899999999987 79987 99999999997 5
Q ss_pred CCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccc
Q 003047 439 QDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP-LLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGK 517 (854)
Q Consensus 439 ~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~-~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~ 517 (854)
.|....+|+++|..+...|++++|..+|++++.+.|+++ .+|..++.++...+
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-------------------------- 370 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE-------------------------- 370 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHH--------------------------
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhc--------------------------
Confidence 245678999999999999999999999999999999996 69999998876211
Q ss_pred cceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccc
Q 003047 518 WRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSK 597 (854)
Q Consensus 518 ~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (854)
.++.|+.+|++|+...|....
T Consensus 371 ----------------------------------~~~~A~~~~~~Al~~~~~~~~------------------------- 391 (530)
T 2ooe_A 371 ----------------------------------GIKSGRMIFKKAREDARTRHH------------------------- 391 (530)
T ss_dssp ----------------------------------HHHHHHHHHHHHHTCTTCCTH-------------------------
T ss_pred ----------------------------------CHHHHHHHHHHHHhccCCchH-------------------------
Confidence 136699999999987554211
Q ss_pred cccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHH-HHHcCCHHHHH
Q 003047 598 NLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYV-ELEMENPVKAL 676 (854)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v-~l~lg~~~~Al 676 (854)
++...+.+ +...|++.+|.
T Consensus 392 ------------------------------------------------------------~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 392 ------------------------------------------------------------VYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHHTCCHHHHH
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHcCChhHHH
Confidence 01112223 34699999999
Q ss_pred HHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCC
Q 003047 677 AAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPA 755 (854)
Q Consensus 677 ~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 755 (854)
.+++++|. .|+.+..+..++.+ +..+|++++|+.+|++++. ..
T Consensus 412 ~~~e~al~~~p~~~~~~~~~~~~-----~~~~g~~~~Ar~~~~~al~--~~----------------------------- 455 (530)
T 2ooe_A 412 KIFELGLKKYGDIPEYVLAYIDY-----LSHLNEDNNTRVLFERVLT--SG----------------------------- 455 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----HTTTTCHHHHHHHHHHHHH--SC-----------------------------
T ss_pred HHHHHHHHHCCCCHHHHHHHHHH-----HHhCCCHhhHHHHHHHHHh--cc-----------------------------
Confidence 99999997 78888888777764 4478999999999999994 10
Q ss_pred CCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 756 AAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 756 ~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
| .+|+. ...+|..........|+++.+.++++++++..|+.
T Consensus 456 ---------~-----~~~~~-~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 456 ---------S-----LPPEK-SGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp ---------C-----SCGGG-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred ---------C-----CCHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 1 11111 35567667777777899999999999999999853
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.78 E-value=2.4e-17 Score=162.69 Aligned_cols=146 Identities=13% Similarity=0.038 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
+.+..+.+|..+|++++|++.++++++++ |+++.+++.+|.+|...|++++|++.+.+++. ..|. .+.++..+|.+
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~-~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV-LDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCch-hHHHHHHHHHH
Confidence 44456888889999999999999999999 99999999999999999999999999999999 6784 67899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
+...+++++|+.++.+++.. .+....+++.+|.+|..+|++++|+++|+++++++|+++.+|++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~----------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 146 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL----------------NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQS 146 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh----------------CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHH
Confidence 99999999999999999998 34567899999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 003047 483 LAECCL 488 (854)
Q Consensus 483 La~~~i 488 (854)
+|.++.
T Consensus 147 lg~~~~ 152 (184)
T 3vtx_A 147 IGLAYE 152 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999988
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.77 E-value=1.3e-16 Score=167.89 Aligned_cols=236 Identities=17% Similarity=0.132 Sum_probs=189.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCC
Q 003047 57 KPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGS 136 (854)
Q Consensus 57 ~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 136 (854)
+|+++.+++++|.+++..+ ++.+++..+.++++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~------~~~~A~~~~~~a~~----------------------------------------- 34 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEK------DFTQAKKYFEKACD----------------------------------------- 34 (273)
T ss_dssp ---CHHHHHHHHHHHHHTT------CHHHHHHHHHHHHH-----------------------------------------
T ss_pred CCCChHHHHHHHHHHHhCC------CHHHHHHHHHHHHH-----------------------------------------
Confidence 5789999999998877554 45567777777772
Q ss_pred cccccchhhHHHHHHHHHHHHH----hhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHH----ccCHHHHHHHH
Q 003047 137 LVYMDEFDVSVAKLNIAVIWFH----LHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALA----CHDAFRSADVL 208 (854)
Q Consensus 137 ~~~~~~~~~~~~~~n~a~~~~~----~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~----~~~~~kA~~~l 208 (854)
++++..++++|.+|.. .+++++|+++|+++++. ++. .+++.++.+|.. .+++++|+
T Consensus 35 ------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~---~a~~~lg~~~~~g~~~~~~~~~A~--- 98 (273)
T 1ouv_A 35 ------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NYS---NGCHLLGNLYYSGQGVSQNTNKAL--- 98 (273)
T ss_dssp ------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCH---HHHHHHHHHHHHTSSSCCCHHHHH---
T ss_pred ------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----CCH---HHHHHHHHHHhCCCCcccCHHHHH---
Confidence 2245689999999999 99999999999999884 222 368889999999 99999998
Q ss_pred HHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhc
Q 003047 209 IYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLE 288 (854)
Q Consensus 209 ~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (854)
.+|++++... + .
T Consensus 99 ~~~~~a~~~~-----~-------------------------------~-------------------------------- 110 (273)
T 1ouv_A 99 QYYSKACDLK-----Y-------------------------------A-------------------------------- 110 (273)
T ss_dssp HHHHHHHHTT-----C-------------------------------H--------------------------------
T ss_pred HHHHHHHHcC-----C-------------------------------c--------------------------------
Confidence 5678776442 0 0
Q ss_pred cccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 003047 289 ISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLL----TRNLKHAKREVKLAMNIARGKDSSLALFLKS 364 (854)
Q Consensus 289 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~----~~~~~~A~~elk~al~~~~~P~~~~a~~lla 364 (854)
...+..+.+|.. .+++++|++.++++++.. ++.+++.+|
T Consensus 111 ---------------------------------~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg 153 (273)
T 1ouv_A 111 ---------------------------------EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCTILG 153 (273)
T ss_dssp ---------------------------------HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHH
T ss_pred ---------------------------------cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHHHHH
Confidence 011223455566 789999999999999876 678999999
Q ss_pred HHHHH----hcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhchhcccCCcccccc
Q 003047 365 QLEYA----RRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ----LAKYHTSSVFLSKALSNSASLRKDKPLKLLT 436 (854)
Q Consensus 365 ~ly~~----~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~----~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~ 436 (854)
.+|.. .+++++|+++|++++. .. .+.+++++|.+|.. .+++++|+.+|+++++.
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------------- 215 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACD-LK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-------------- 215 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--------------
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC--------------
Confidence 99999 9999999999999998 33 35788899999999 99999999999999997
Q ss_pred ccCCccHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 437 FSQDKSLLITYNCGLQYLA----CGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 437 ~~~~~~~~~~~nLG~~ll~----~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
. ...+++++|.+|.. .+++++|+.+|++++++.|+++..++.
T Consensus 216 --~--~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~ 261 (273)
T 1ouv_A 216 --E--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILK 261 (273)
T ss_dssp --T--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred --C--CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1 26789999999999 999999999999999999986555544
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.77 E-value=1.2e-16 Score=160.45 Aligned_cols=215 Identities=13% Similarity=-0.025 Sum_probs=183.4
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccccc
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVN 221 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~ 221 (854)
+|+++..++++|.+++..|+|++|+++|+++++..+... .+++.++.+|...|++++|+ .++++++.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~---~~~~~a~~~~--- 72 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE-----LAWLVRAEIYQYLKVNDKAQ---ESFRQALSIK--- 72 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHHHHH---HHHHHHHHHC---
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch-----HHHHHHHHHHHHcCChHHHH---HHHHHHHHhC---
Confidence 567888999999999999999999999999999654432 25778899999999999998 5677776553
Q ss_pred CCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCc
Q 003047 222 QVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLS 301 (854)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (854)
++.
T Consensus 73 -~~~---------------------------------------------------------------------------- 75 (225)
T 2vq2_A 73 -PDS---------------------------------------------------------------------------- 75 (225)
T ss_dssp -TTC----------------------------------------------------------------------------
T ss_pred -CCC----------------------------------------------------------------------------
Confidence 100
Q ss_pred cchhhhhhhhcccchhHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHH--hcCCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 003047 302 SNELSRTLVDRSISTVDLKLKLQLYKVRFLLLT-RNLKHAKREVKLAMN--IARGKDSSLALFLKSQLEYARRNHRKAIK 378 (854)
Q Consensus 302 ~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~-~~~~~A~~elk~al~--~~~~P~~~~a~~lla~ly~~~g~~~kAl~ 378 (854)
.......+.+|... |++++|++.+++++. .. |++..+++.+|.++...|++++|++
T Consensus 76 -------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 76 -------------------AEINNNYGWFLCGRLNRPAESMAYFDKALADPTY--PTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp -------------------HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTC--SCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------------------hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCC--cchHHHHHHHHHHHHHcCCHHHHHH
Confidence 00223357788899 999999999999999 66 7889999999999999999999999
Q ss_pred HHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCC-ccHHHHHHHHHHHHHCC
Q 003047 379 LLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQD-KSLLITYNCGLQYLACG 457 (854)
Q Consensus 379 ~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~-~~~~~~~nLG~~ll~~G 457 (854)
+|++++. ..|. ...++..+|.+|..+|++++|+.+|++++.. .+ .....+..++.++...|
T Consensus 135 ~~~~~~~-~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~ 196 (225)
T 2vq2_A 135 YLKRSLA-AQPQ-FPPAFKELARTKMLAGQLGDADYYFKKYQSR----------------VEVLQADDLLLGWKIAKALG 196 (225)
T ss_dssp HHHHHHH-HSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------HCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHH-hCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCCHHHHHHHHHHHHhcC
Confidence 9999999 6784 5788999999999999999999999999998 23 45677888899999999
Q ss_pred CcHHHHHHHHHHHHhcCCCHHHHHHH
Q 003047 458 KPVLAARCFQKSSLVFYKQPLLWLRL 483 (854)
Q Consensus 458 k~eeAl~~y~kAL~l~P~~~~aw~~L 483 (854)
++++|..+++.++..+|+++.++..+
T Consensus 197 ~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 197 NAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99999999999999999999987665
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.77 E-value=3.4e-17 Score=187.60 Aligned_cols=352 Identities=11% Similarity=-0.011 Sum_probs=241.7
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCH---HHHHHHHHHHHHhhhcccccCCCCC
Q 003047 150 LNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDA---FRSADVLIYLEKAFSVGCVNQVDSG 226 (854)
Q Consensus 150 ~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~---~kA~~~l~~lek~l~~~~~~~~~~~ 226 (854)
..+|.+++..|++++|+++|+++... . ..+ +++.|+.+|...|++ ++|+ .+|+++.... +
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~-g-~~~-----A~~~Lg~~y~~~g~~~d~~~A~---~~~~~A~~~~----~--- 69 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL-G-YSE-----AQVGLADIQVGTRDPAQIKQAE---ATYRAAADTS----P--- 69 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T-CCT-----GGGTCC-------------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC-C-CHH-----HHHHHHHHHHccCCCCCHHHHH---HHHHHHHhCC----H---
Confidence 46899999999999999999999874 2 122 367788999999999 7886 5677765321 0
Q ss_pred CcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhh
Q 003047 227 SMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELS 306 (854)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 306 (854)
.+.++||
T Consensus 70 -------------------------------------------------------------------------~A~~~Lg 76 (452)
T 3e4b_A 70 -------------------------------------------------------------------------RAQARLG 76 (452)
T ss_dssp --------------------------------------------------------------------------CHHHHH
T ss_pred -------------------------------------------------------------------------HHHHHHH
Confidence 1233455
Q ss_pred hhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHH---HHHHHh
Q 003047 307 RTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAI---KLLLAL 383 (854)
Q Consensus 307 ~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl---~~l~ka 383 (854)
.+++..+.. ..++.++|++.++++++.+ ++.+++.+|.+|...+...++. +.+.++
T Consensus 77 ~~~~~~~~~-----------------~~~~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a 135 (452)
T 3e4b_A 77 RLLAAKPGA-----------------TEAEHHEAESLLKKAFANG----EGNTLIPLAMLYLQYPHSFPNVNAQQQISQW 135 (452)
T ss_dssp HHHHTC--C-----------------CHHHHHHHHHHHHHHHHTT----CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHH
T ss_pred HHHHhCCCC-----------------CCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 544332100 0136678888888888765 4459999999999888765554 444444
Q ss_pred hhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCC---CcH
Q 003047 384 SNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACG---KPV 460 (854)
Q Consensus 384 l~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~G---k~e 460 (854)
.. + ..+.++++||.+|...+.+++++....+...... ..++.+++++|.+|...| +++
T Consensus 136 ~~---~-g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~---------------~~~~~a~~~Lg~~~~~~g~~~~~~ 196 (452)
T 3e4b_A 136 QA---A-GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAAL---------------NTTDICYVELATVYQKKQQPEQQA 196 (452)
T ss_dssp HH---H-TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT---------------TTCTTHHHHHHHHHHHTTCHHHHH
T ss_pred HH---C-CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH---------------cCCHHHHHHHHHHHHHcCCcccHH
Confidence 43 2 1245788899999999976666655333333210 012348999999999999 999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCC
Q 003047 461 LAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDD 540 (854)
Q Consensus 461 eAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~ 540 (854)
+|+.+|++++...|..+..|++||.++. ... | .
T Consensus 197 ~A~~~~~~aa~~g~~~a~~~~~Lg~~y~---~g~-------------------~-----------------~-------- 229 (452)
T 3e4b_A 197 ELLKQMEAGVSRGTVTAQRVDSVARVLG---DAT-------------------L-----------------G-------- 229 (452)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHT---CGG-------------------G-----------------S--------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCC-------------------C-----------------C--------
Confidence 9999999999999999999999998875 210 0 0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccccccccccccccccccccccc
Q 003047 541 SSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTA 620 (854)
Q Consensus 541 ~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (854)
....+.|..+|+.|. |.++.
T Consensus 230 ---------~~d~~~A~~~~~~aa---~g~~~------------------------------------------------ 249 (452)
T 3e4b_A 230 ---------TPDEKTAQALLEKIA---PGYPA------------------------------------------------ 249 (452)
T ss_dssp ---------SCCHHHHHHHHHHHG---GGSTH------------------------------------------------
T ss_pred ---------CCCHHHHHHHHHHHc---CCCHH------------------------------------------------
Confidence 013578999999987 54331
Q ss_pred CCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHcCCCChHHHHHHHH
Q 003047 621 NGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYV-E--LEMENPVKALAAARSLLELPDCSRIYIFLGH 697 (854)
Q Consensus 621 ~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v-~--l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~ 697 (854)
++.+||.+ + ...+|+.+|+.+++++.... ++.++..||.
T Consensus 250 -------------------------------------a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~ 291 (452)
T 3e4b_A 250 -------------------------------------SWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-QPRAELLLGK 291 (452)
T ss_dssp -------------------------------------HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred -------------------------------------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 24566776 3 57899999999999999654 7889999999
Q ss_pred HHHHHHHHhcC-----CHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCC
Q 003047 698 IYAAEALCLLN-----RPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPK 772 (854)
Q Consensus 698 lY~aeAl~~lg-----r~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~ 772 (854)
+|. .| ++++|+.+|+++. ..
T Consensus 292 ~y~------~G~g~~~d~~~A~~~~~~Aa--~g----------------------------------------------- 316 (452)
T 3e4b_A 292 LYY------EGKWVPADAKAAEAHFEKAV--GR----------------------------------------------- 316 (452)
T ss_dssp HHH------HCSSSCCCHHHHHHHHHTTT--TT-----------------------------------------------
T ss_pred HHH------cCCCCCCCHHHHHHHHHHHh--CC-----------------------------------------------
Confidence 886 36 9999999999887 11
Q ss_pred chhhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHh
Q 003047 773 PEEARGTLYVNIAAMFAM----QGEFERAHHFVTQALSILPRSTEATLTAIYVDLM----LGKSQEALAKLKY 837 (854)
Q Consensus 773 ~~~a~a~~~~NLa~~~~~----~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~----~G~~~eA~~~lk~ 837 (854)
.+.++++||.+|.. ..|+++|.++|+++.+. +++.+...++.++.. ..++.+|+..+++
T Consensus 317 ----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 317 ----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp ----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 36778999999987 45999999999999874 567777778877753 4599999999987
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.75 E-value=3.3e-16 Score=161.58 Aligned_cols=148 Identities=20% Similarity=0.114 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHH
Q 003047 321 LKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLG 400 (854)
Q Consensus 321 ~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG 400 (854)
....+..+.+|...|++++|++.+++++... |++..+++.+|.++...|++++|+++|++++. .+|. ...++.++|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~-~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALA-SDSR-NARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCcC-cHHHHHHHH
Confidence 3466778999999999999999999999999 99999999999999999999999999999999 6784 578999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHH--hchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH
Q 003047 401 CIYYQLAKYHTSSVFLSKALS--NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 401 ~iy~~~g~~~eAi~~f~kAL~--~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~ 478 (854)
.+|..+|++++|+.+|++++. . .+....+++++|.++...|++++|+.+|++++.+.|+++.
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 176 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTL----------------YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS 176 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTT----------------CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCcc----------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH
Confidence 999999999999999999998 3 2345788999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 003047 479 LWLRLAECCL 488 (854)
Q Consensus 479 aw~~La~~~i 488 (854)
+|..+|.++.
T Consensus 177 ~~~~la~~~~ 186 (252)
T 2ho1_A 177 VALEMADLLY 186 (252)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999988
No 58
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.75 E-value=5.2e-17 Score=166.22 Aligned_cols=208 Identities=12% Similarity=-0.037 Sum_probs=149.9
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCC
Q 003047 145 VSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVD 224 (854)
Q Consensus 145 ~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~ 224 (854)
++..++++|.+++..|+|++|+++|+++++..++.+. .+++.++.+|...|++++|+ .++++++.+. ++
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~~~~~~A~---~~~~~al~~~----p~ 74 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS----VTAYNCGVCADNIKKYKEAA---DYFDIAIKKN----YN 74 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH----HHHHHHHHHHHHTTCHHHHH---HHHHHHHHTT----CS
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc----HHHHHHHHHHHHhhcHHHHH---HHHHHHHHhC----cc
Confidence 4468999999999999999999999999996542232 24666888888888888887 5677776543 10
Q ss_pred CCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccch
Q 003047 225 SGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNE 304 (854)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (854)
.
T Consensus 75 -------------------------------~------------------------------------------------ 75 (228)
T 4i17_A 75 -------------------------------L------------------------------------------------ 75 (228)
T ss_dssp -------------------------------H------------------------------------------------
T ss_pred -------------------------------h------------------------------------------------
Confidence 0
Q ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHHhcCHHHHH
Q 003047 305 LSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS-------LALFLKSQLEYARRNHRKAI 377 (854)
Q Consensus 305 ~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~-------~a~~lla~ly~~~g~~~kAl 377 (854)
....+..+.+|..+|++++|++.+++++.+. |+++ .+++.+|.++...|++++|+
T Consensus 76 ----------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 137 (228)
T 4i17_A 76 ----------------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAE 137 (228)
T ss_dssp ----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred ----------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHH
Confidence 0123345677777888888888888888888 8887 55788888888888888888
Q ss_pred HHHHHhhhccCCCccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHH
Q 003047 378 KLLLALSNRTEMGISS----MFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQY 453 (854)
Q Consensus 378 ~~l~kal~~~dp~~~a----~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~l 453 (854)
++|++++.. .+. .+++++|.+|..+|+ .+++++..+. +.....+ .+...
T Consensus 138 ~~~~~al~~----~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~----------------~~~~~~~--~~~~~ 190 (228)
T 4i17_A 138 ENYKHATDV----TSKKWKTDALYSLGVLFYNNGA-----DVLRKATPLA----------------SSNKEKY--ASEKA 190 (228)
T ss_dssp HHHHHHTTS----SCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGT----------------TTCHHHH--HHHHH
T ss_pred HHHHHHHhc----CCCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcc----------------cCCHHHH--HHHHH
Confidence 888888772 355 467777888865443 4455655541 1111121 24445
Q ss_pred HHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 454 LACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 454 l~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
...+.+++|+.+|+++++++|+++.++..|+.+.
T Consensus 191 ~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 191 KADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 5566689999999999999999999999888753
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.75 E-value=6.9e-16 Score=154.90 Aligned_cols=149 Identities=16% Similarity=0.171 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHH
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGC 401 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~ 401 (854)
...+..+.+|...|++++|++.+++++... |++..+++.+|.++...|++++|+++|++++. .+|. ...++.++|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALS-IKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHH-hCCC-ChHHHHHHHH
Confidence 355677899999999999999999999999 99999999999999999999999999999999 6784 5788999999
Q ss_pred HHHHc-CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHH
Q 003047 402 IYYQL-AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLW 480 (854)
Q Consensus 402 iy~~~-g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw 480 (854)
+|... |++++|+.+|++++.. +. .+....+++++|.++...|++++|+.+|++++...|+++.+|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~-~~-------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 150 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALAD-PT-------------YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAF 150 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTS-TT-------------CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcC-cC-------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHH
Confidence 99999 9999999999999982 10 234568899999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 003047 481 LRLAECCL 488 (854)
Q Consensus 481 ~~La~~~i 488 (854)
..+|.++.
T Consensus 151 ~~la~~~~ 158 (225)
T 2vq2_A 151 KELARTKM 158 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999988
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.74 E-value=3e-16 Score=160.59 Aligned_cols=154 Identities=8% Similarity=0.011 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGK-DSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGC 401 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P-~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~ 401 (854)
..+.++.+|+..|++++|++.+++++.+. | .+..+++.+|.+++..|++++|+++|++++. .+|. .+.++.++|.
T Consensus 9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 9 QLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK-KNYN-LANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH-hCcc-hHHHHHHHHH
Confidence 45567999999999999999999999999 9 9999999999999999999999999999999 7884 6889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC--CHHH
Q 003047 402 IYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK--QPLL 479 (854)
Q Consensus 402 iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~--~~~a 479 (854)
+|..+|++++|+.+|++++...+.... + ......+++++|.++...|++++|+.+|+++++++|+ ++.+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~---~------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 155 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNAT---I------EKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDA 155 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHH---H------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHH---H------HHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHH
Confidence 999999999999999999998321000 0 0001267999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHH
Q 003047 480 WLRLAECCLM 489 (854)
Q Consensus 480 w~~La~~~i~ 489 (854)
|+++|.++..
T Consensus 156 ~~~l~~~~~~ 165 (228)
T 4i17_A 156 LYSLGVLFYN 165 (228)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999984
No 61
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.74 E-value=4.9e-16 Score=172.23 Aligned_cols=247 Identities=13% Similarity=0.020 Sum_probs=192.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--cCCC---
Q 003047 320 KLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARG----KDSSLALFLKSQLEYARRNHRKAIKLLLALSNR--TEMG--- 390 (854)
Q Consensus 320 ~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~----P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~--~dp~--- 390 (854)
.....++++..+...|++++|+..+++++.+... |....+++.+|.+|...|++++|++++++++.. ..+.
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh
Confidence 3446788999999999999999999999988511 234678899999999999999999999999973 1111
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Q 003047 391 ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSS 470 (854)
Q Consensus 391 ~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL 470 (854)
..+.+++++|.+|..+|++++|+.+|++|+.+.+.... ......+++++|.+|...|++++|+.+|++++
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 249 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN----------DRFIAISLLNIANSYDRSGDDQMAVEHFQKAA 249 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 24678899999999999999999999999998543321 01235789999999999999999999999999
Q ss_pred H-----hcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCC
Q 003047 471 L-----VFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGS 545 (854)
Q Consensus 471 ~-----l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~ 545 (854)
. .+|..+.++..+|.++. +.+
T Consensus 250 ~~~~~~~~~~~~~~~~~la~~~~---~~g--------------------------------------------------- 275 (378)
T 3q15_A 250 KVSREKVPDLLPKVLFGLSWTLC---KAG--------------------------------------------------- 275 (378)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHHH---HTT---------------------------------------------------
T ss_pred HHHHhhCChhHHHHHHHHHHHHH---HCC---------------------------------------------------
Confidence 9 77888899999999988 321
Q ss_pred CCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcc
Q 003047 546 DGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAK 625 (854)
Q Consensus 546 ~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~ 625 (854)
.++.|..+|++|+.+.+......
T Consensus 276 ------~~~~A~~~~~~al~~~~~~~~~~--------------------------------------------------- 298 (378)
T 3q15_A 276 ------QTQKAFQFIEEGLDHITARSHKF--------------------------------------------------- 298 (378)
T ss_dssp ------CHHHHHHHHHHHHHHCCTTCCSC---------------------------------------------------
T ss_pred ------CHHHHHHHHHHHHHHHHHcCCHH---------------------------------------------------
Confidence 24779999999999988743100
Q ss_pred cccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Q 003047 626 DQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMEN---PVKALAAARSLLELPDCSRIYIFLGHIYAAE 702 (854)
Q Consensus 626 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~---~~~Al~~~~~lL~~p~~~~~~~~la~lY~ae 702 (854)
.. ..+..++.++...|+ +.+|+.++++.-..+.....+..+|.
T Consensus 299 ---------~~--------------------~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~----- 344 (378)
T 3q15_A 299 ---------YK--------------------ELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA----- 344 (378)
T ss_dssp ---------HH--------------------HHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred ---------HH--------------------HHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH-----
Confidence 00 113455667888888 88888888874334444455555555
Q ss_pred HHHhcCCHHHHHHHHHhhh
Q 003047 703 ALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 703 Al~~lgr~~eAl~~l~~~l 721 (854)
.+...|++++|+.++++++
T Consensus 345 ~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 4557899999999999998
No 62
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.74 E-value=2.7e-15 Score=166.23 Aligned_cols=314 Identities=9% Similarity=-0.009 Sum_probs=217.2
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHH--HHHHHHHH--HHhCCCChh------HHHHHHHHH
Q 003047 24 LSVTATLAKEAALYFQSRKFDECLDLLKQLLDK---KPDDPKIL--HNIAIAEY--FRDGCTDPK------KLLEALNNV 90 (854)
Q Consensus 24 ~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~---~~~~~~~l--~nla~~~~--~~~~~~~~~------~~~~~l~~~ 90 (854)
.+++..++-+-..++..+++++|..+++++... -..|.+++ +.+....+ ..+.+.... .+.+.+..+
T Consensus 9 ~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 9 SSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHH
Confidence 467788899999999999999999999998763 22366665 44332222 123332222 111222222
Q ss_pred HHHHHHHHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHH
Q 003047 91 KNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLE 170 (854)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e 170 (854)
..... ..++.-...+++.+|..++..|+|++|+++|+
T Consensus 89 ~~~~~-------------------------------------------~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~ 125 (378)
T 3q15_A 89 ETPQK-------------------------------------------KLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYR 125 (378)
T ss_dssp HGGGH-------------------------------------------HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hccCC-------------------------------------------CCccHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 21110 11122344567788999999999999999999
Q ss_pred HhhhccCCCchh-hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCccc
Q 003047 171 PLYQNIEPIDET-TALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTA 249 (854)
Q Consensus 171 ~l~~~~~~~~e~-~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (854)
++++..+.+.+. ....+++.++.+|...|++++|+ .++++++.+.......
T Consensus 126 ~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~---~~~~~al~~~~~~~~~------------------------- 177 (378)
T 3q15_A 126 EAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSM---YHILQALDIYQNHPLY------------------------- 177 (378)
T ss_dssp HHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHH---HHHHHHHHHHHTSTTC-------------------------
T ss_pred HHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHH---HHHHHHHHHHHhCCCc-------------------------
Confidence 999987766554 34457888999999999999998 6889888775211000
Q ss_pred ccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHH
Q 003047 250 DASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVR 329 (854)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~ 329 (854)
. . .........+.
T Consensus 178 ------~-----------------------~--------------------------------------~~~~~~~~lg~ 190 (378)
T 3q15_A 178 ------S-----------------------I--------------------------------------RTIQSLFVIAG 190 (378)
T ss_dssp ------H-----------------------H--------------------------------------HHHHHHHHHHH
T ss_pred ------h-----------------------h--------------------------------------hHHHHHHHHHH
Confidence 0 0 00112223466
Q ss_pred HHHHhcCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHHH
Q 003047 330 FLLLTRNLKHAKREVKLAMNIARGKD----SSLALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLGC 401 (854)
Q Consensus 330 lyl~~~~~~~A~~elk~al~~~~~P~----~~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~ 401 (854)
+|...|++++|++.+++++.+.+..+ ...+++.+|.+|...|++++|+++|++++.. .+|. .+.+++++|.
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~ 269 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSW 269 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHH
Confidence 77788999999999999999861112 2457889999999999999999999999972 3564 4889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHhcCCCHH
Q 003047 402 IYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK---PVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 402 iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk---~eeAl~~y~kAL~l~P~~~~ 478 (854)
+|..+|++++|+.+|++++.+.+... .+.....+..++..+...++ +.+|+.+|++ ....|....
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~ 337 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARS-----------HKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEA 337 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTC-----------CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHH
Confidence 99999999999999999999854332 11223345677888888887 7777777776 334445556
Q ss_pred HHHHHHHHHH
Q 003047 479 LWLRLAECCL 488 (854)
Q Consensus 479 aw~~La~~~i 488 (854)
++..||.++.
T Consensus 338 ~~~~la~~y~ 347 (378)
T 3q15_A 338 CARSAAAVFE 347 (378)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6777777766
No 63
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.73 E-value=6.9e-17 Score=195.48 Aligned_cols=114 Identities=11% Similarity=-0.096 Sum_probs=73.9
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003047 342 REVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALS 421 (854)
Q Consensus 342 ~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~ 421 (854)
+.++++++++ |++..+++.+|.++..+|++++|+++|+++++ .+|+ .+.++++||.+|..+|++++|+.+|++||+
T Consensus 64 ~~~~~Al~l~--P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~-l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~ 139 (723)
T 4gyw_A 64 MHYKEAIRIS--PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ-INPA-FADAHSNLASIHKDSGNIPEAIASYRTALK 139 (723)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444445 66666666667777777777777777777666 5663 466666677777777777777777777776
Q ss_pred hchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC
Q 003047 422 NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 422 ~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~ 475 (854)
+ .+....+++++|.+|..+|++++|.++|++++++.|+
T Consensus 140 l----------------~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 140 L----------------KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp H----------------CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred h----------------CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 6 2344566667777777777777777777776666544
No 64
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=1.5e-14 Score=179.51 Aligned_cols=269 Identities=10% Similarity=-0.001 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
++...++.++..|++++|+..+.+ .+++++++.+|..+...|+|++|+++|..+.+ ..+. +.+...+|.+
T Consensus 1107 vWsqLAKAql~~G~~kEAIdsYiK-------AdD~say~eVa~~~~~lGkyEEAIeyL~mArk-~~~e--~~Idt~Lafa 1176 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARK-KARE--SYVETELIFA 1176 (1630)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHh-------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hccc--ccccHHHHHH
Confidence 334468888999999999999954 46889999999999999999999999999998 4442 2344569999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
|.+++++++ ++.|. .. .....++++|..++..|+|++|..+|.++ ..|.+
T Consensus 1177 YAKl~rlee-le~fI---~~------------------~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~r 1226 (1630)
T 1xi4_A 1177 LAKTNRLAE-LEEFI---NG------------------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGR 1226 (1630)
T ss_pred HHhhcCHHH-HHHHH---hC------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHH
Confidence 999999885 55552 21 23456779999999999999999999996 48999
Q ss_pred HHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 003047 483 LAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLN 562 (854)
Q Consensus 483 La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~n 562 (854)
+|.|++ +.+ .++.|+.|+++
T Consensus 1227 LA~tLv---kLg---------------------------------------------------------e~q~AIEaarK 1246 (1630)
T 1xi4_A 1227 LASTLV---HLG---------------------------------------------------------EYQAAVDGARK 1246 (1630)
T ss_pred HHHHHH---HhC---------------------------------------------------------CHHHHHHHHHH
Confidence 999998 210 24679999998
Q ss_pred HHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccc
Q 003047 563 ALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSY 642 (854)
Q Consensus 563 AL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~ 642 (854)
| ....
T Consensus 1247 A-----~n~~---------------------------------------------------------------------- 1251 (1630)
T 1xi4_A 1247 A-----NSTR---------------------------------------------------------------------- 1251 (1630)
T ss_pred h-----CCHH----------------------------------------------------------------------
Confidence 8 1111
Q ss_pred hhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhc
Q 003047 643 YEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLS 722 (854)
Q Consensus 643 ~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~ 722 (854)
+|...++++...|+|..|..+.-.+...| +.+..+++.|. ..|+++||+.+++.++
T Consensus 1252 ---------------aWkev~~acve~~Ef~LA~~cgl~Iiv~~---deLeeli~yYe-----~~G~feEAI~LlE~aL- 1307 (1630)
T 1xi4_A 1252 ---------------TWKEVCFACVDGKEFRLAQMCGLHIVVHA---DELEELINYYQ-----DRGYFEELITMLEAAL- 1307 (1630)
T ss_pred ---------------HHHHHHHHHhhhhHHHHHHHHHHhhhcCH---HHHHHHHHHHH-----HcCCHHHHHHHHHHHh-
Confidence 13345778889999999999988644454 45557777665 5899999999999998
Q ss_pred CCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHc--CCHHHHHHH
Q 003047 723 GGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQ--GEFERAHHF 800 (854)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~--g~~e~A~~~ 800 (854)
.++ | ++..++..||.+++.- +++-++.+.
T Consensus 1308 -~Le--------------------------------------r----------aH~gmftELaiLyaKy~peklmEhlk~ 1338 (1630)
T 1xi4_A 1308 -GLE--------------------------------------R----------AHMGMFTELAILYSKFKPQKMREHLEL 1338 (1630)
T ss_pred -ccC--------------------------------------h----------hHhHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 332 1 2678888899999887 899999999
Q ss_pred HHHHHhhCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003047 801 VTQALSILP-----RSTEATLTAIYVDLMLGKSQEALAKLKYCN 839 (854)
Q Consensus 801 ~~~Al~~~P-----~~~~a~~l~~y~~L~~G~~~eA~~~lk~~~ 839 (854)
|...+.+.| ...+.+.-+++++.+-|+++.|+..+-.|.
T Consensus 1339 f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~ 1382 (1630)
T 1xi4_A 1339 FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 1382 (1630)
T ss_pred HHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhcc
Confidence 998888766 567888999999999999999997766554
No 65
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.72 E-value=1.4e-16 Score=165.84 Aligned_cols=246 Identities=11% Similarity=-0.010 Sum_probs=190.6
Q ss_pred HcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCc
Q 003047 39 QSRKFDECLDLLKQLLDK----KPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSK 114 (854)
Q Consensus 39 ~~g~y~~Al~~l~~~l~~----~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~ 114 (854)
..|+|++|+..|+++++. +|.++.+++++|.+++..++ +.+++..+.+++..
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~A~~~~~~al~~------------------ 72 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGL------RALARNDFSQALAI------------------ 72 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHH------------------
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHccc------HHHHHHHHHHHHHc------------------
Confidence 458999999999999997 45678999999999886643 55577777777741
Q ss_pred ccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHH
Q 003047 115 VGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDV 194 (854)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~v 194 (854)
+|+++..++++|.+|...|+|++|+++|+++++..+...+ +++.++.+
T Consensus 73 ---------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~la~~ 120 (275)
T 1xnf_A 73 ---------------------------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY-----AHLNRGIA 120 (275)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH-----HHHHHHHH
T ss_pred ---------------------------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccH-----HHHHHHHH
Confidence 3556779999999999999999999999999996544332 58889999
Q ss_pred HHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhh
Q 003047 195 ALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEE 274 (854)
Q Consensus 195 y~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (854)
|...|++++|+ .++++++.+. ++. .
T Consensus 121 ~~~~g~~~~A~---~~~~~a~~~~----~~~------------------------------~------------------ 145 (275)
T 1xnf_A 121 LYYGGRDKLAQ---DDLLAFYQDD----PND------------------------------P------------------ 145 (275)
T ss_dssp HHHTTCHHHHH---HHHHHHHHHC----TTC------------------------------H------------------
T ss_pred HHHhccHHHHH---HHHHHHHHhC----CCC------------------------------h------------------
Confidence 99999999998 5678777653 110 0
Q ss_pred hhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCC
Q 003047 275 TLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGK 354 (854)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P 354 (854)
. ..+ ...++...|++++|+..+++++... |
T Consensus 146 -------------------------------------------~----~~~-~~~~~~~~~~~~~A~~~~~~~~~~~--~ 175 (275)
T 1xnf_A 146 -------------------------------------------F----RSL-WLYLAEQKLDEKQAKEVLKQHFEKS--D 175 (275)
T ss_dssp -------------------------------------------H----HHH-HHHHHHHHHCHHHHHHHHHHHHHHS--C
T ss_pred -------------------------------------------H----HHH-HHHHHHHhcCHHHHHHHHHHHHhcC--C
Confidence 0 000 1123355699999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCc
Q 003047 355 DSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG---ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKP 431 (854)
Q Consensus 355 ~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~---~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~ 431 (854)
++...+. ++.+++..+++++|++.+.+++. ..|. ..+.++.++|.+|..+|++++|+.+|++++...
T Consensus 176 ~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------- 245 (275)
T 1xnf_A 176 KEQWGWN-IVEFYLGNISEQTLMERLKADAT-DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-------- 245 (275)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCC-SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------
T ss_pred cchHHHH-HHHHHHHhcCHHHHHHHHHHHhc-ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------
Confidence 8866654 78888899999999999999998 3431 125788999999999999999999999999982
Q ss_pred cccccccCCccHHHHHHHHHHHHHCCCcHHHHHHH
Q 003047 432 LKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCF 466 (854)
Q Consensus 432 l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y 466 (854)
|.. +...+.++..+|++++|+++|
T Consensus 246 --------p~~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 --------VHN---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --------CTT---CHHHHHHHHHHHHHHHC----
T ss_pred --------chh---HHHHHHHHHHHHHHHhhHHHH
Confidence 222 223488999999999999988
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=1.5e-16 Score=167.92 Aligned_cols=241 Identities=13% Similarity=0.028 Sum_probs=181.1
Q ss_pred ccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCC---chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhh
Q 003047 140 MDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPI---DETTALQICLLLLDVALACHDAFRSADVLIYLEKAFS 216 (854)
Q Consensus 140 ~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~---~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~ 216 (854)
.++|+.+..++++|.+|+..|+|++|+.+|+++++..+.. +......+++.++.+|...|++++|+ .++++++.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~---~~~~~al~ 97 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAA---NLLNDALA 97 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHH---HHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHH---HHHHHHHH
Confidence 3478899999999999999999999999999999864432 23334457888999999999999998 56777776
Q ss_pred cccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCC
Q 003047 217 VGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTR 296 (854)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (854)
+.....+..
T Consensus 98 ~~~~~~~~~----------------------------------------------------------------------- 106 (311)
T 3nf1_A 98 IREKTLGKD----------------------------------------------------------------------- 106 (311)
T ss_dssp HHHHHHCTT-----------------------------------------------------------------------
T ss_pred HHHHHhCCC-----------------------------------------------------------------------
Confidence 531100000
Q ss_pred CCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHHh
Q 003047 297 PVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIA------RGKDSSLALFLKSQLEYAR 370 (854)
Q Consensus 297 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~------~~P~~~~a~~lla~ly~~~ 370 (854)
...........+.+|...|++++|++.+++++.+. ..|....+++.+|.++...
T Consensus 107 --------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 166 (311)
T 3nf1_A 107 --------------------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ 166 (311)
T ss_dssp --------------------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT
T ss_pred --------------------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc
Confidence 00001233445778889999999999999999882 1256677889999999999
Q ss_pred cCHHHHHHHHHHhhhc------c-CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcc--c-------------
Q 003047 371 RNHRKAIKLLLALSNR------T-EMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLR--K------------- 428 (854)
Q Consensus 371 g~~~kAl~~l~kal~~------~-dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~--~------------- 428 (854)
|++++|+++|++++.. . .| ....+++++|.+|..+|++++|+.+|++++...++.. .
T Consensus 167 ~~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 245 (311)
T 3nf1_A 167 GKYEEVEYYYQRALEIYQTKLGPDDP-NVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAE 245 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTSCTTCH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 9999999999999983 1 44 4567889999999999999999999999998643210 0
Q ss_pred ------C-----Ccc-------ccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC
Q 003047 429 ------D-----KPL-------KLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 429 ------~-----~~l-------~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~ 475 (854)
. ..+ .......+....+++++|.+|...|++++|+.+|++++++.|+
T Consensus 246 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 246 EREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 0 000 0000122445788999999999999999999999999999886
No 67
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.72 E-value=1.3e-14 Score=159.58 Aligned_cols=298 Identities=12% Similarity=0.002 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHH-----HHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCC
Q 003047 319 LKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSL-----ALFLKSQLEYARRNHRKAIKLLLALSNR----TEM 389 (854)
Q Consensus 319 ~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~-----a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp 389 (854)
..-.+.+.++.+++..|++++|...+++++... |.+.. +++.+|.++...|++++|++.+++++.. .++
T Consensus 12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (373)
T 1hz4_A 12 MHAEFNALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH
Confidence 444577888999999999999999999999998 75532 6788999999999999999999999873 111
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHH
Q 003047 390 GISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKS 469 (854)
Q Consensus 390 ~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kA 469 (854)
.....+++++|.+|..+|++++|+.+|++++...+...... .+....++.++|.++...|++++|..+|+++
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ--------LPMHEFLVRIRAQLLWAWARLDEAEASARSG 161 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT--------STHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc--------CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 11234578899999999999999999999999854332100 0224567889999999999999999999999
Q ss_pred HHhcCCC-----HHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCC
Q 003047 470 SLVFYKQ-----PLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLG 544 (854)
Q Consensus 470 L~l~P~~-----~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~ 544 (854)
+.+.|.. ..+|..+|.++.. .+
T Consensus 162 l~~~~~~~~~~~~~~~~~la~~~~~---~g-------------------------------------------------- 188 (373)
T 1hz4_A 162 IEVLSSYQPQQQLQCLAMLIQCSLA---RG-------------------------------------------------- 188 (373)
T ss_dssp HHHTTTSCGGGGHHHHHHHHHHHHH---HT--------------------------------------------------
T ss_pred HHHhhccCcHHHHHHHHHHHHHHHH---cC--------------------------------------------------
Confidence 9998863 4567777776662 10
Q ss_pred CCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCc
Q 003047 545 SDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDA 624 (854)
Q Consensus 545 ~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 624 (854)
.++.|..+|++++.+.+......
T Consensus 189 -------~~~~A~~~l~~a~~~~~~~~~~~-------------------------------------------------- 211 (373)
T 1hz4_A 189 -------DLDNARSQLNRLENLLGNGKYHS-------------------------------------------------- 211 (373)
T ss_dssp -------CHHHHHHHHHHHHHHHTTSCCCH--------------------------------------------------
T ss_pred -------CHHHHHHHHHHHHHHHhccCcch--------------------------------------------------
Confidence 24679999999998866522100
Q ss_pred ccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHH
Q 003047 625 KDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEA 703 (854)
Q Consensus 625 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeA 703 (854)
.. .......++.+++..|++.+|+.++++++. .+..+. .........+.+
T Consensus 212 ----------~~------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~la~~ 262 (373)
T 1hz4_A 212 ----------DW------------------ISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH-FLQGQWRNIARA 262 (373)
T ss_dssp ----------HH------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG-GGHHHHHHHHHH
T ss_pred ----------hH------------------HHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcch-hhHHHHHHHHHH
Confidence 00 001112345568899999999999999987 332211 001112334556
Q ss_pred HHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHH
Q 003047 704 LCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVN 783 (854)
Q Consensus 704 l~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~N 783 (854)
+...|++++|+.++++++. .. . ..+ .+ ...+.++..
T Consensus 263 ~~~~g~~~~A~~~l~~a~~--~~-----------~---~~~-------------------~~---------~~~~~~~~~ 298 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNE--NA-----------R---SLR-------------------LM---------SDLNRNLLL 298 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HH-----------H---HTT-------------------CH---------HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--HH-----------H---hCc-------------------ch---------hhHHHHHHH
Confidence 6789999999999999983 10 0 000 00 113457889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC
Q 003047 784 IAAMFAMQGEFERAHHFVTQALSILP 809 (854)
Q Consensus 784 La~~~~~~g~~e~A~~~~~~Al~~~P 809 (854)
+|.++..+|++++|..++++++.+.+
T Consensus 299 la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 299 LNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998765
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.72 E-value=3.1e-16 Score=180.62 Aligned_cols=209 Identities=12% Similarity=-0.020 Sum_probs=176.7
Q ss_pred hhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhh
Q 003047 159 LHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDA-FRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLA 237 (854)
Q Consensus 159 ~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~-~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~ 237 (854)
.+++++|+..+++.....+... .+++.++.+|...|+| ++|+ .+|++++.+. ++.
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a-----~~~~~lg~~~~~~g~~~~~A~---~~~~~al~~~----p~~------------ 136 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEA-----QALMLKGKALNVTPDYSPEAE---VLLSKAVKLE----PEL------------ 136 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCH-----HHHHHHHHHHTSSSSCCHHHH---HHHHHHHHHC----TTC------------
T ss_pred HHHHHHHHHHHHHHhccCchhH-----HHHHHHHHHHHhccccHHHHH---HHHHHHHhhC----CCC------------
Confidence 4567888888887776333211 3688899999999999 9998 5778887664 110
Q ss_pred ccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchh
Q 003047 238 KYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTV 317 (854)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 317 (854)
T Consensus 137 -------------------------------------------------------------------------------- 136 (474)
T 4abn_A 137 -------------------------------------------------------------------------------- 136 (474)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh---------cCHHHHHHHHHHhhhccC
Q 003047 318 DLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYAR---------RNHRKAIKLLLALSNRTE 388 (854)
Q Consensus 318 ~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~---------g~~~kAl~~l~kal~~~d 388 (854)
.......+.+|..+|++++|++.++++++++ |+ ..+++.+|.++... |++++|+++|++++. .+
T Consensus 137 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~ 209 (474)
T 4abn_A 137 ---VEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ-MD 209 (474)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH-HC
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH-hC
Confidence 0123345778888999999999999999999 99 79999999999999 999999999999999 78
Q ss_pred CCccHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcH
Q 003047 389 MGISSMFNNNLGCIYYQL--------AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPV 460 (854)
Q Consensus 389 p~~~a~~~nnLG~iy~~~--------g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~e 460 (854)
|. .+.+|+++|.+|..+ |++++|+.+|++++.+.+. .+..+.+|+++|.+|...|+++
T Consensus 210 p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-------------~~~~~~~~~~lg~~~~~~g~~~ 275 (474)
T 4abn_A 210 VL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-------------ASSNPDLHLNRATLHKYEESYG 275 (474)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-------------GGGCHHHHHHHHHHHHHTTCHH
T ss_pred CC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-------------cccCHHHHHHHHHHHHHcCCHH
Confidence 84 688999999999999 9999999999999998321 0146789999999999999999
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 003047 461 LAARCFQKSSLVFYKQPLLWLRLAECCLMALE 492 (854)
Q Consensus 461 eAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~ 492 (854)
+|+.+|++++.++|+++.+|.+++.++...++
T Consensus 276 ~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 276 EALEGFSQAAALDPAWPEPQQREQQLLEFLSR 307 (474)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999986554
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.71 E-value=3.1e-16 Score=189.79 Aligned_cols=143 Identities=11% Similarity=0.018 Sum_probs=135.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
.+.+|..+|++++|++.++++++++ |++..+++.+|.+|..+|++++|+++|+++++ .+|+ .+.+|++||.+|..+
T Consensus 15 LG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~-l~P~-~~~a~~nLg~~l~~~ 90 (723)
T 4gyw_A 15 LANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR-ISPT-FADAYSNMGNTLKEM 90 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHc
Confidence 4666677899999999999999999 99999999999999999999999999999999 7994 688999999999999
Q ss_pred CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 407 AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
|++++|+++|++|+++ .+....+++|+|.+|..+|++++|+.+|+++++++|+++.+|.+||.+
T Consensus 91 g~~~~A~~~~~kAl~l----------------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 91 QDVQGALQCYTRAIQI----------------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHC 154 (723)
T ss_dssp TCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhH
Confidence 9999999999999998 355689999999999999999999999999999999999999999999
Q ss_pred HHH
Q 003047 487 CLM 489 (854)
Q Consensus 487 ~i~ 489 (854)
+..
T Consensus 155 l~~ 157 (723)
T 4gyw_A 155 LQI 157 (723)
T ss_dssp HHH
T ss_pred HHh
Confidence 884
No 70
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.71 E-value=9e-17 Score=151.38 Aligned_cols=121 Identities=9% Similarity=0.004 Sum_probs=112.2
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhc
Q 003047 347 AMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASL 426 (854)
Q Consensus 347 al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l 426 (854)
+..++ |+...++..+|+.++..|+|++|+++|++++. .+|. .+.+|+++|.+|..+|++++|+.+|++++++
T Consensus 5 ~a~in--P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---- 76 (126)
T 4gco_A 5 LAYIN--PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK-RDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRL---- 76 (126)
T ss_dssp --CCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHh----
Confidence 44577 99999999999999999999999999999999 7894 6889999999999999999999999999998
Q ss_pred ccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 427 RKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 427 ~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
.+....+|+++|.+|..+|++++|+.+|+++++++|+++.++..|+.|+
T Consensus 77 ------------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 77 ------------DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp ------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred ------------hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 3456789999999999999999999999999999999999999999874
No 71
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.69 E-value=4.6e-17 Score=157.75 Aligned_cols=137 Identities=10% Similarity=0.052 Sum_probs=126.5
Q ss_pred HHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHH
Q 003047 332 LLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHT 411 (854)
Q Consensus 332 l~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~e 411 (854)
...|++++|++.+++++... |+++.+++.+|.+|+..|+|++|+++|++++. .+|. ++.+|+++|.+|..+|++++
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~-~~p~-~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN-VQER-DPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCchHH
Confidence 34688899999999999999 99999999999999999999999999999999 7894 68899999999999999999
Q ss_pred HHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHH-HHHHHHhcCCCHHHHHHHHHHHH
Q 003047 412 SSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARC-FQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 412 Ai~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~-y~kAL~l~P~~~~aw~~La~~~i 488 (854)
|+.+|++++++ .|.+..+++++|.+|...|++++|..+ ++++++++|+++.+|..++.++.
T Consensus 84 A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 84 AVECYRRSVEL----------------NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 99999999998 355688999999999999999887766 59999999999999999888766
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.69 E-value=1.8e-14 Score=158.28 Aligned_cols=283 Identities=14% Similarity=-0.008 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISS----MFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a----~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
..++.+|.+++..|++++|+.++++++. ..|.... .+++++|.+|...|++++|+.+|++++...+....
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----- 88 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALE-ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV----- 88 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-TCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc-----
Confidence 5667889999999999999999999998 4443322 36788999999999999999999999998543210
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHHHHhccccCCCCCCCCC
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFY--------KQPLLWLRLAECCLMALEKGLVAPGRSLSDG 505 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P--------~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~ 505 (854)
......+++++|.++...|++++|+.+|++++.+.+ ....++..+|.++. ..+
T Consensus 89 -----~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~---~~g----------- 149 (373)
T 1hz4_A 89 -----WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW---AWA----------- 149 (373)
T ss_dssp -----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH---HTT-----------
T ss_pred -----HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH---Hhc-----------
Confidence 001245678999999999999999999999999873 34556777887776 210
Q ss_pred cccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcc
Q 003047 506 SEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSV 585 (854)
Q Consensus 506 ~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~ 585 (854)
.++.|..+|++++.+.+......
T Consensus 150 ----------------------------------------------~~~~A~~~~~~al~~~~~~~~~~----------- 172 (373)
T 1hz4_A 150 ----------------------------------------------RLDEAEASARSGIEVLSSYQPQQ----------- 172 (373)
T ss_dssp ----------------------------------------------CHHHHHHHHHHHHHHTTTSCGGG-----------
T ss_pred ----------------------------------------------CHHHHHHHHHHHHHHhhccCcHH-----------
Confidence 24779999999999988732100
Q ss_pred cccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHH
Q 003047 586 EESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYV 665 (854)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v 665 (854)
....+..+|.+
T Consensus 173 ---------------------------------------------------------------------~~~~~~~la~~ 183 (373)
T 1hz4_A 173 ---------------------------------------------------------------------QLQCLAMLIQC 183 (373)
T ss_dssp ---------------------------------------------------------------------GHHHHHHHHHH
T ss_pred ---------------------------------------------------------------------HHHHHHHHHHH
Confidence 00236678999
Q ss_pred HHHcCCHHHHHHHHHHHHc---CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHh
Q 003047 666 ELEMENPVKALAAARSLLE---LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVE 742 (854)
Q Consensus 666 ~l~lg~~~~Al~~~~~lL~---~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 742 (854)
+...|++.+|+.++++++. .+..+..+........+.++...|++++|+.++++++. ....
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~~~-------------- 247 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK--PEFA-------------- 247 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC--CCCT--------------
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC--CCCC--------------
Confidence 9999999999999999885 23333233332222344557789999999999999883 1100
Q ss_pred hhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHH
Q 003047 743 KIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRS------TEATL 816 (854)
Q Consensus 743 ~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~------~~a~~ 816 (854)
.+ ......+.++|.++..+|++++|...+++++...+.. ..++.
T Consensus 248 ---------------------~~---------~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 297 (373)
T 1hz4_A 248 ---------------------NN---------HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 297 (373)
T ss_dssp ---------------------TC---------GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------------------cc---------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 00 0123457889999999999999999999998875432 34777
Q ss_pred HHHHHHHhcCCHHHHHHHHHh
Q 003047 817 TAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 817 l~~y~~L~~G~~~eA~~~lk~ 837 (854)
.++.++...|++++|...+++
T Consensus 298 ~la~~~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 298 LLNQLYWQAGRKSDAQRVLLD 318 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHH
Confidence 888888999999999998877
No 73
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.69 E-value=4.2e-16 Score=167.31 Aligned_cols=237 Identities=10% Similarity=-0.044 Sum_probs=180.2
Q ss_pred chhhHHHHHHH-HHHHHHhhcHHHHHHHHHHhhhccCCCchhh-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccc
Q 003047 142 EFDVSVAKLNI-AVIWFHLHEYAKALSVLEPLYQNIEPIDETT-ALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGC 219 (854)
Q Consensus 142 ~~~~~~~~~n~-a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~-~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~ 219 (854)
+++.+..+|+. |.+|..+|+|++|+++|++++...+...+.. ...++..++.+|..+|++++|+ .+|++++.+..
T Consensus 32 ~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~---~~~~~Al~l~~ 108 (292)
T 1qqe_A 32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV---DSLENAIQIFT 108 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH---HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH---HHHHHHHHHHH
Confidence 47778888887 6789999999999999999999766655543 4557888999999999999998 67899887751
Q ss_pred ccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCC
Q 003047 220 VNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVG 299 (854)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (854)
.. ++ . ... .
T Consensus 109 ~~-g~-------------------------------~----------------------~~~-----------------a 117 (292)
T 1qqe_A 109 HR-GQ-------------------------------F----------------------RRG-----------------A 117 (292)
T ss_dssp HT-TC-------------------------------H----------------------HHH-----------------H
T ss_pred Hc-CC-------------------------------H----------------------HHH-----------------H
Confidence 11 00 0 000 0
Q ss_pred CccchhhhhhhhcccchhHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHHhcC
Q 003047 300 LSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLT-RNLKHAKREVKLAMNIARGKDS------SLALFLKSQLEYARRN 372 (854)
Q Consensus 300 ~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~-~~~~~A~~elk~al~~~~~P~~------~~a~~lla~ly~~~g~ 372 (854)
.++++ .+.+|..+ |++++|++.+++++.+. |++ ..++..+|.++...|+
T Consensus 118 ~~~~~----------------------lg~~~~~~lg~~~~A~~~~~~Al~~~--~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 118 NFKFE----------------------LGEILENDLHDYAKAIDCYELAGEWY--AQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp HHHHH----------------------HHHHHHHTTCCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHH----------------------HHHHHHHhhcCHHHHHHHHHHHHHHH--HhCCChHHHHHHHHHHHHHHHHhCC
Confidence 01222 35566675 99999999999999999 865 5678899999999999
Q ss_pred HHHHHHHHHHhhhccCCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHH
Q 003047 373 HRKAIKLLLALSNRTEMGIS------SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLIT 446 (854)
Q Consensus 373 ~~kAl~~l~kal~~~dp~~~------a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~ 446 (854)
|++|+++|++++. ..|... ..+++++|.+|..+|++++|+.+|++++.+.+.+.. ......+
T Consensus 174 ~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-----------~~~~~~l 241 (292)
T 1qqe_A 174 YIEASDIYSKLIK-SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD-----------SRESNFL 241 (292)
T ss_dssp HHHHHHHHHHHHH-TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------------------HHHH
T ss_pred HHHHHHHHHHHHH-HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-----------cHHHHHH
Confidence 9999999999999 455322 226889999999999999999999999998554321 1123455
Q ss_pred HHHHHHHH--HCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 447 YNCGLQYL--ACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 447 ~nLG~~ll--~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+++.++. ..+++++|+..|++++.++|.+..+|.++-....
T Consensus 242 ~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~~ 285 (292)
T 1qqe_A 242 KSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESIQ 285 (292)
T ss_dssp HHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhh
Confidence 66777775 5677999999999999999999888888876553
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=5.3e-16 Score=163.77 Aligned_cols=274 Identities=15% Similarity=0.080 Sum_probs=190.0
Q ss_pred CCCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhCC
Q 003047 6 STQSTAAGNTSGEDDSGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDK--------KPDDPKILHNIAIAEYFRDGC 77 (854)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~--------~~~~~~~l~nla~~~~~~~~~ 77 (854)
++..+...-+.|.++. ..+..++..|..++..|+|++|+.+|++++++ .|..+.++.++|.+++..++
T Consensus 9 ~~~~~~~~q~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~- 84 (311)
T 3nf1_A 9 SGRENLYFQGGGYEIP---ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK- 84 (311)
T ss_dssp GGGGGGSCSSSCTTSC---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC-
T ss_pred cccccccccCCCCcch---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC-
Confidence 3444555666676665 45778899999999999999999999999994 66678999999999886654
Q ss_pred CChhHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHH
Q 003047 78 TDPKKLLEALNNVKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWF 157 (854)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~ 157 (854)
+.+++..+.+++...... ...+++..+..++++|.+|.
T Consensus 85 -----~~~A~~~~~~al~~~~~~-------------------------------------~~~~~~~~~~~~~~l~~~~~ 122 (311)
T 3nf1_A 85 -----YKDAANLLNDALAIREKT-------------------------------------LGKDHPAVAATLNNLAVLYG 122 (311)
T ss_dssp -----HHHHHHHHHHHHHHHHHH-------------------------------------HCTTCHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHH-------------------------------------hCCCChHHHHHHHHHHHHHH
Confidence 444666666665321000 00125667889999999999
Q ss_pred HhhcHHHHHHHHHHhhhccCCC---chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhh
Q 003047 158 HLHEYAKALSVLEPLYQNIEPI---DETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTN 234 (854)
Q Consensus 158 ~~~~y~~A~~~~e~l~~~~~~~---~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~ 234 (854)
..|+|++|+++|+++++..+.. +......+++.++.+|...|++++|+ .++++++.+.....+..
T Consensus 123 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~---~~~~~a~~~~~~~~~~~--------- 190 (311)
T 3nf1_A 123 KRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE---YYYQRALEIYQTKLGPD--------- 190 (311)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH---HHHHHHHHHHHHTSCTT---------
T ss_pred HcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHHHHHHhCCC---------
Confidence 9999999999999999865221 11223456788999999999999998 56677766531110000
Q ss_pred hhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhccc
Q 003047 235 LLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSI 314 (854)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 314 (854)
T Consensus 191 -------------------------------------------------------------------------------- 190 (311)
T 3nf1_A 191 -------------------------------------------------------------------------------- 190 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCC---------------CHHHHHHHHHHHHHhcCHHHHHHH
Q 003047 315 STVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKD---------------SSLALFLKSQLEYARRNHRKAIKL 379 (854)
Q Consensus 315 ~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~---------------~~~a~~lla~ly~~~g~~~kAl~~ 379 (854)
...........+.+|..+|++++|++.+++++.+. |+ ....+...+..+...+.+.+|+..
T Consensus 191 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 191 --DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp --CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred --CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 00011234446888999999999999999999875 43 233445566667777788888888
Q ss_pred HHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 380 LLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 380 l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
+.+++. ..| ..+.++.++|.+|..+|++++|+.+|++++++.
T Consensus 267 ~~~~~~-~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 267 YKACKV-DSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp --------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhhcCC-CCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 988887 566 467889999999999999999999999999973
No 75
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.67 E-value=3.5e-15 Score=156.30 Aligned_cols=216 Identities=10% Similarity=0.051 Sum_probs=161.4
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhccccc
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVN 221 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~ 221 (854)
+++++..+|++|..++..|+|++|+++|+++++..+.. . ....+++.++.+|...|++++|+ ..|++++...
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~-~-~~~~a~~~lg~~~~~~~~~~~A~---~~~~~~l~~~--- 82 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH-E-WAADAQFYLARAYYQNKEYLLAA---SEYERFIQIY--- 82 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS-T-THHHHHHHHHHHHHHTTCHHHHH---HHHHHHHHHC---
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC-c-chHHHHHHHHHHHHHhCcHHHHH---HHHHHHHHHC---
Confidence 45677899999999999999999999999999965432 2 22347889999999999999998 5677777653
Q ss_pred CCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCc
Q 003047 222 QVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLS 301 (854)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (854)
++. +.
T Consensus 83 -p~~--------------------~~------------------------------------------------------ 87 (261)
T 3qky_A 83 -QID--------------------PR------------------------------------------------------ 87 (261)
T ss_dssp -TTC--------------------TT------------------------------------------------------
T ss_pred -CCC--------------------ch------------------------------------------------------
Confidence 110 00
Q ss_pred cchhhhhhhhcccchhHHHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCH
Q 003047 302 SNELSRTLVDRSISTVDLKLKLQLYKVRFLLL--------TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNH 373 (854)
Q Consensus 302 ~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~--------~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~ 373 (854)
.....+..+.+|.. +|++++|++.+++++..+ |+++.+...+..+.
T Consensus 88 ------------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~------ 141 (261)
T 3qky_A 88 ------------------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIR------ 141 (261)
T ss_dssp ------------------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHH------
T ss_pred ------------------hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHH------
Confidence 00123345666666 888999999999999999 98876544433222
Q ss_pred HHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHH
Q 003047 374 RKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQY 453 (854)
Q Consensus 374 ~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~l 453 (854)
.+.. .....++++|.+|..+|++++|+.+|++++...|+ .+....+++++|.+|
T Consensus 142 --------~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~-------------~~~~~~a~~~l~~~~ 195 (261)
T 3qky_A 142 --------ELRA-----KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD-------------TPWADDALVGAMRAY 195 (261)
T ss_dssp --------HHHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------STTHHHHHHHHHHHH
T ss_pred --------HHHH-----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-------------CchHHHHHHHHHHHH
Confidence 1111 12344678999999999999999999999998431 122468999999999
Q ss_pred HHC----------CCcHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHh
Q 003047 454 LAC----------GKPVLAARCFQKSSLVFYKQP---LLWLRLAECCLMALE 492 (854)
Q Consensus 454 l~~----------Gk~eeAl~~y~kAL~l~P~~~---~aw~~La~~~i~~~~ 492 (854)
..+ |++++|+.+|++++..+|+++ .++..++.++....+
T Consensus 196 ~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 196 IAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp HHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence 987 889999999999999999995 456677777664433
No 76
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.67 E-value=1.5e-15 Score=154.78 Aligned_cols=116 Identities=12% Similarity=0.091 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHH----------------HHHHHHHcCCHHHHHHHHHHH
Q 003047 356 SSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNN----------------LGCIYYQLAKYHTSSVFLSKA 419 (854)
Q Consensus 356 ~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nn----------------LG~iy~~~g~~~eAi~~f~kA 419 (854)
.++.++.+|..++..|++++|+.+|++++. .+| .++.+++. +|.+|..+|++++|+.+|+++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIA-LNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455667777777777777777777777777 566 34666666 999999999999999999999
Q ss_pred HHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003047 420 LSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 420 L~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~ 489 (854)
+.+ .|.+..+++++|.+|...|++++|+.+|+++++++|+++.+|++||.++..
T Consensus 81 l~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 81 LQK----------------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHH----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 998 355689999999999999999999999999999999999999999999874
No 77
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.65 E-value=3.1e-14 Score=153.64 Aligned_cols=225 Identities=10% Similarity=0.043 Sum_probs=172.6
Q ss_pred HHHHHHHHHhhhccCCCccHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-hchhcccCCcccccccc
Q 003047 374 RKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ-------LAKY-------HTSSVFLSKALS-NSASLRKDKPLKLLTFS 438 (854)
Q Consensus 374 ~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~-------~g~~-------~eAi~~f~kAL~-~~~~l~~~~~l~~~~~~ 438 (854)
++|+..|++++. .+|. .+.+|+++|.++.. .|++ ++|+..|++|+. +
T Consensus 33 ~~a~~~~~~al~-~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~---------------- 94 (308)
T 2ond_A 33 KRVMFAYEQCLL-VLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL---------------- 94 (308)
T ss_dssp HHHHHHHHHHHH-HHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT----------------
T ss_pred HHHHHHHHHHHH-HcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh----------------
Confidence 456666666666 4553 45566666666542 4664 999999999999 5
Q ss_pred CCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccc
Q 003047 439 QDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL-LWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGK 517 (854)
Q Consensus 439 ~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~-aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~ 517 (854)
.|....+|+++|..+...|++++|..+|++++.+.|+++. +|..+|.++.. .+
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~---~~----------------------- 148 (308)
T 2ond_A 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR---AE----------------------- 148 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH---HH-----------------------
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH---hc-----------------------
Confidence 2446789999999999999999999999999999999987 99999988762 21
Q ss_pred cceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccc
Q 003047 518 WRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSK 597 (854)
Q Consensus 518 ~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (854)
.++.|+.+|++|+.+.|....
T Consensus 149 ----------------------------------~~~~A~~~~~~a~~~~p~~~~------------------------- 169 (308)
T 2ond_A 149 ----------------------------------GIKSGRMIFKKAREDARTRHH------------------------- 169 (308)
T ss_dssp ----------------------------------CHHHHHHHHHHHHTSTTCCTH-------------------------
T ss_pred ----------------------------------CHHHHHHHHHHHHhcCCCCHH-------------------------
Confidence 136799999999998775321
Q ss_pred cccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHH-HcCCHHHHH
Q 003047 598 NLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVEL-EMENPVKAL 676 (854)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l-~lg~~~~Al 676 (854)
++...+.+.. .+|++.+|+
T Consensus 170 ------------------------------------------------------------~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 170 ------------------------------------------------------------VYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHTSCCHHHHH
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHcCCHHHHH
Confidence 1112222322 379999999
Q ss_pred HHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCC
Q 003047 677 AAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPA 755 (854)
Q Consensus 677 ~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 755 (854)
.++++++. .|..+..+..++.+ +..+|++++|+.+|++++.. ..+
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~-----~~~~g~~~~A~~~~~~al~~-~~l---------------------------- 235 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDY-----LSHLNEDNNTRVLFERVLTS-GSL---------------------------- 235 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----HHTTCCHHHHHHHHHHHHHS-SSS----------------------------
T ss_pred HHHHHHHHhCCCcHHHHHHHHHH-----HHHCCCHHHHHHHHHHHHhc-cCC----------------------------
Confidence 99999997 78888888777764 45789999999999999931 000
Q ss_pred CCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 003047 756 AAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRST 812 (854)
Q Consensus 756 ~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~ 812 (854)
.|. . ...+|.+++..+...|++++|..+++++++..|+++
T Consensus 236 --------~p~--------~-~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 236 --------PPE--------K-SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp --------CGG--------G-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred --------CHH--------H-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 011 0 467788899999999999999999999999999864
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.65 E-value=7e-15 Score=142.41 Aligned_cols=147 Identities=12% Similarity=-0.021 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHH
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGC 401 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~ 401 (854)
...+.++.+|...|++++|++.+++++... |+++.+++.+|.++...|++++|++++++++. ..|. ...++.++|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~~a~ 84 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLA-DAPD-NVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCC-CHHHHHHHHH
Confidence 455667899999999999999999999999 99999999999999999999999999999999 6774 5789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHH
Q 003047 402 IYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWL 481 (854)
Q Consensus 402 iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~ 481 (854)
+|...|++++|+.+|++++.. .+....+++++|.++...|++++|+.+|++++.+.|+++.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 148 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEA----------------NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHR 148 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhc----------------CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHH
Confidence 999999999999999999998 3445788999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 003047 482 RLAECCL 488 (854)
Q Consensus 482 ~La~~~i 488 (854)
.+|.++.
T Consensus 149 ~la~~~~ 155 (186)
T 3as5_A 149 AIAFSYE 155 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999988
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.63 E-value=2.1e-14 Score=138.98 Aligned_cols=129 Identities=12% Similarity=0.057 Sum_probs=84.5
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCC
Q 003047 329 RFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK 408 (854)
Q Consensus 329 ~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~ 408 (854)
.+|...|++++|++.+++++... |++..+++.+|.++...|++++|+++|++++. ..|. .+.++..+|.+|..+|+
T Consensus 50 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~~a~~~~~~~~ 125 (186)
T 3as5_A 50 IAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE-ANPI-NFNVRFRLGVALDNLGR 125 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCcH-hHHHHHHHHHHHHHcCc
Confidence 34444455555555555555555 66666666777777777777777777777776 4553 45666667777777777
Q ss_pred HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH
Q 003047 409 YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 409 ~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
+++|+.+|++++.. .+....+++++|.++...|++++|+.+|++++.+.|+++
T Consensus 126 ~~~A~~~~~~~~~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 126 FDEAIDSFKIALGL----------------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhc----------------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 77777777777766 223456667777777777777777777777777776654
No 80
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=6.2e-14 Score=151.26 Aligned_cols=217 Identities=7% Similarity=-0.070 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-------hcCH-------HHHHHHHHHhhhccCCCccHHHHHHHHHHH
Q 003047 338 KHAKREVKLAMNIARGKDSSLALFLKSQLEYA-------RRNH-------RKAIKLLLALSNRTEMGISSMFNNNLGCIY 403 (854)
Q Consensus 338 ~~A~~elk~al~~~~~P~~~~a~~lla~ly~~-------~g~~-------~kAl~~l~kal~~~dp~~~a~~~nnLG~iy 403 (854)
++|...+++++..+ |+++.+|+.+|.++.. .|++ ++|+.+|++++...+| ....+|.++|.++
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 68999999999999 9999999999999874 4885 9999999999982277 4678999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHH-HHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 404 YQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLL-ITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 404 ~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~-~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
...|++++|+..|++++.+ .+.... +|.++|.++...|++++|..+|++++++.|..+.+|..
T Consensus 110 ~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 173 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI----------------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 173 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS----------------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHH
T ss_pred HhcCCHHHHHHHHHHHHhc----------------cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999999997 233344 89999999999999999999999999999999988886
Q ss_pred HHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 003047 483 LAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLN 562 (854)
Q Consensus 483 La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~n 562 (854)
.+.+... .. ...+.|+.+|++
T Consensus 174 ~a~~~~~--~~---------------------------------------------------------~~~~~A~~~~~~ 194 (308)
T 2ond_A 174 AALMEYY--CS---------------------------------------------------------KDKSVAFKIFEL 194 (308)
T ss_dssp HHHHHHH--TS---------------------------------------------------------CCHHHHHHHHHH
T ss_pred HHHHHHH--Hc---------------------------------------------------------CCHHHHHHHHHH
Confidence 6554331 00 024789999999
Q ss_pred HHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccc
Q 003047 563 ALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSY 642 (854)
Q Consensus 563 AL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~ 642 (854)
|+.+.|....
T Consensus 195 al~~~p~~~~---------------------------------------------------------------------- 204 (308)
T 2ond_A 195 GLKKYGDIPE---------------------------------------------------------------------- 204 (308)
T ss_dssp HHHHHTTCHH----------------------------------------------------------------------
T ss_pred HHHhCCCcHH----------------------------------------------------------------------
Confidence 9999987431
Q ss_pred hhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcC---C--CChHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 003047 643 YEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLEL---P--DCSRIYIFLGHIYAAEALCLLNRPKEAAEHF 717 (854)
Q Consensus 643 ~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~---p--~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l 717 (854)
++..++.++..+|++.+|+..+++++.. | .....+..++.++. ..|++++|+.++
T Consensus 205 ---------------~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~-----~~g~~~~a~~~~ 264 (308)
T 2ond_A 205 ---------------YVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES-----NIGDLASILKVE 264 (308)
T ss_dssp ---------------HHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH-----HHSCHHHHHHHH
T ss_pred ---------------HHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH-----HcCCHHHHHHHH
Confidence 2456677888999999999999999984 3 25567766766544 579999999999
Q ss_pred Hhhhc
Q 003047 718 SMYLS 722 (854)
Q Consensus 718 ~~~l~ 722 (854)
++++.
T Consensus 265 ~~a~~ 269 (308)
T 2ond_A 265 KRRFT 269 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99983
No 81
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.61 E-value=2.4e-14 Score=149.89 Aligned_cols=167 Identities=8% Similarity=-0.044 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC--ccHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS---SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG--ISSMFNN 397 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~---~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~--~~a~~~n 397 (854)
..+.++..++..|++++|++.+++++... |++ +.+++.+|.+|+..|++++|++.|++++. ..|. ..+.+++
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~-~~p~~~~~~~a~~ 93 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ-IYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH-HCCCCchhHHHHH
Confidence 55678999999999999999999999999 999 99999999999999999999999999999 5553 3467899
Q ss_pred HHHHHHHH--------cCCHHHHHHHHHHHHHhchhcccC-CccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 398 NLGCIYYQ--------LAKYHTSSVFLSKALSNSASLRKD-KPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 398 nLG~iy~~--------~g~~~eAi~~f~kAL~~~~~l~~~-~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
++|.+|.. +|++++|+.+|++++...|+-..- ................++++|.+|+..|++++|+.+|++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999 999999999999999984421000 000000000001122348999999999999999999999
Q ss_pred HHHhcCC---CHHHHHHHHHHHHHHHh
Q 003047 469 SSLVFYK---QPLLWLRLAECCLMALE 492 (854)
Q Consensus 469 AL~l~P~---~~~aw~~La~~~i~~~~ 492 (854)
++..+|+ .+.+|+.+|.|+...+.
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~ 200 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAE 200 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcc
Confidence 9999999 56799999999996544
No 82
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.61 E-value=1.2e-15 Score=149.01 Aligned_cols=126 Identities=13% Similarity=0.106 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003047 340 AKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKA 419 (854)
Q Consensus 340 A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kA 419 (854)
+-..+++++.++ |+++.+++.+|..++..|++++|+++|++++. .+|. ++.+|+++|.+|..+|++++|+.+|+++
T Consensus 21 ~~~~l~~al~l~--p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~-~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 21 SGATLKDINAIP--DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI-YDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp TSCCTGGGCCSC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHhCCC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 345677888899 99999999999999999999999999999999 7994 6889999999999999999999999999
Q ss_pred HHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 420 LSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 420 L~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
+.+ .|.++.+|+++|.+|..+|++++|+.+|++++.+.|+.+ +-..+..+
T Consensus 97 l~l----------------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~--~~~~A~~l 146 (151)
T 3gyz_A 97 FAL----------------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK--LKIKAQSY 146 (151)
T ss_dssp HHH----------------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH--HHHHHHHH
T ss_pred Hhh----------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH--HHHHHHHH
Confidence 999 345678999999999999999999999999999999976 34444433
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.61 E-value=3e-14 Score=152.85 Aligned_cols=210 Identities=9% Similarity=-0.010 Sum_probs=154.9
Q ss_pred HHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccC
Q 003047 364 SQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQ 439 (854)
Q Consensus 364 a~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~ 439 (854)
|.+|...|++++|+++|.+++.. .+|...+.+++++|.+|..+|++++|+.+|++|+.+.+.... .
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~----------~ 113 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ----------F 113 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC----------H
Confidence 56778899999999999999883 233234678999999999999999999999999998554321 0
Q ss_pred CccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHhccccCCCCCCCCCcccceee
Q 003047 440 DKSLLITYNCGLQYLAC-GKPVLAARCFQKSSLVFYKQ------PLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHV 512 (854)
Q Consensus 440 ~~~~~~~~nLG~~ll~~-Gk~eeAl~~y~kAL~l~P~~------~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~ 512 (854)
.....++.++|.+|... |++++|+.+|++++.++|+. ..+|.++|.++. +.+
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~---~~g------------------ 172 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA---LDG------------------ 172 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---HTT------------------
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH---HhC------------------
Confidence 11256889999999996 99999999999999999865 567888888877 210
Q ss_pred ccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccc
Q 003047 513 IGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSE 592 (854)
Q Consensus 513 vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~ 592 (854)
.++.|+.+|++|+.+.|......
T Consensus 173 ---------------------------------------~~~~A~~~~~~al~~~~~~~~~~------------------ 195 (292)
T 1qqe_A 173 ---------------------------------------QYIEASDIYSKLIKSSMGNRLSQ------------------ 195 (292)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHHTTSSCTTTG------------------
T ss_pred ---------------------------------------CHHHHHHHHHHHHHHHhcCCccc------------------
Confidence 24779999999999998854200
Q ss_pred ccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCH
Q 003047 593 GASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENP 672 (854)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~ 672 (854)
+ .....+.++|.+++.+|++
T Consensus 196 -------------------------------------------------~-----------~~~~~~~~lg~~~~~~g~~ 215 (292)
T 1qqe_A 196 -------------------------------------------------W-----------SLKDYFLKKGLCQLAATDA 215 (292)
T ss_dssp -------------------------------------------------G-----------GHHHHHHHHHHHHHHTTCH
T ss_pred -------------------------------------------------H-----------HHHHHHHHHHHHHHHcCCH
Confidence 0 0012467889999999999
Q ss_pred HHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHH--hcCCHHHHHHHHHhhh
Q 003047 673 VKALAAARSLLE-LPDCSRIYIFLGHIYAAEALC--LLNRPKEAAEHFSMYL 721 (854)
Q Consensus 673 ~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~--~lgr~~eAl~~l~~~l 721 (854)
.+|+.++++++. .|............-+.+++. ..+++++|+..|++++
T Consensus 216 ~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 216 VAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 999999999998 666554332211111222333 5788999999999887
No 84
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.60 E-value=6.8e-15 Score=149.89 Aligned_cols=144 Identities=13% Similarity=-0.006 Sum_probs=123.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHH----------------HHHHHHHhcCHHHHHHHHHHhhhcc
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFL----------------KSQLEYARRNHRKAIKLLLALSNRT 387 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~l----------------la~ly~~~g~~~kAl~~l~kal~~~ 387 (854)
.+.++..++..|++++|+..+++++.++ |+++.+++. +|.+|...|++++|+.+|++++. .
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~ 83 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ-K 83 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-H
Confidence 3557889999999999999999999999 999999999 99999999999999999999999 7
Q ss_pred CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC--cHHHHHH
Q 003047 388 EMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK--PVLAARC 465 (854)
Q Consensus 388 dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk--~eeAl~~ 465 (854)
+|. .+.+++++|.+|..+|++++|+.+|++++.+ .|.+..+++++|.+|+..|+ .+.+..+
T Consensus 84 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 84 APN-NVDCLEACAEMQVCRGQEKDALRMYEKILQL----------------EADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp CTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 895 6889999999999999999999999999998 35567899999999988765 4567788
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHH
Q 003047 466 FQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 466 y~kAL~l~P~~~~aw~~La~~~i 488 (854)
|.+++...|. ..+|+++|.++.
T Consensus 147 ~~~~~~~~~~-~~a~~~~g~~~~ 168 (208)
T 3urz_A 147 YKKLSSPTKM-QYARYRDGLSKL 168 (208)
T ss_dssp HC---CCCHH-HHHHHHHHHHHH
T ss_pred HHHHhCCCch-hHHHHHHHHHHH
Confidence 8887643332 236788887776
No 85
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.57 E-value=2.3e-14 Score=172.54 Aligned_cols=136 Identities=10% Similarity=-0.071 Sum_probs=118.9
Q ss_pred HHhcCHHHHHHHHHHHH--------HhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHH
Q 003047 332 LLTRNLKHAKREVKLAM--------NIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIY 403 (854)
Q Consensus 332 l~~~~~~~A~~elk~al--------~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy 403 (854)
+..+++++|++.+++++ ..+ |++..+++.+|.+++..|++++|++.|+++++ .+|+ +..+++++|.+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~-~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAE-RVGW-RWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHCC-CHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc-cCcc-hHHHHHHHHHHH
Confidence 67788999999999999 888 99999999999999999999999999999998 6784 577888899999
Q ss_pred HHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHH
Q 003047 404 YQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRL 483 (854)
Q Consensus 404 ~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~L 483 (854)
..+|++++|+.+|++|+++ .+.+..+++++|.+|..+|++++ +.+|+++++++|+++.+|+++
T Consensus 478 ~~~g~~~~A~~~~~~al~l----------------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~l 540 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDT----------------FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGL 540 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHH----------------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh----------------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHH
Confidence 9999999999999999998 34456888899999999999999 999999999999999999999
Q ss_pred HHHHH
Q 003047 484 AECCL 488 (854)
Q Consensus 484 a~~~i 488 (854)
|.++.
T Consensus 541 g~~~~ 545 (681)
T 2pzi_A 541 ARARS 545 (681)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98877
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.56 E-value=9.3e-15 Score=141.40 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=98.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCc
Q 003047 362 LKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDK 441 (854)
Q Consensus 362 lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~ 441 (854)
.+|.++..+|++++|++.+++++. .+| ..+..++++|.+|.++|++++|+.+|++++.+ .|.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~-~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~----------------~p~ 63 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTP-SPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINV----------------QER 63 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSC-SHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTT
T ss_pred HhHHHHHHcChHHHHHHHHHHhcc-cCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCC
Confidence 368888999999999999999999 677 46778889999999999999999999999999 456
Q ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 442 SLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 442 ~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
++.+|+++|.+|...|++++|+.+|+++++++|+++.+|+++|.++.
T Consensus 64 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 110 (150)
T 4ga2_A 64 DPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLC 110 (150)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999988
No 87
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.56 E-value=2.3e-12 Score=160.31 Aligned_cols=116 Identities=16% Similarity=0.094 Sum_probs=90.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhh
Q 003047 659 LANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQ 738 (854)
Q Consensus 659 l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~ 738 (854)
+..++.++..+|+++.|+++++++ .++.+|+..+. |++..|++..|..|..... .
T Consensus 1224 y~rLA~tLvkLge~q~AIEaarKA----~n~~aWkev~~-----acve~~Ef~LA~~cgl~Ii---v------------- 1278 (1630)
T 1xi4_A 1224 FGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCF-----ACVDGKEFRLAQMCGLHIV---V------------- 1278 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHh----CCHHHHHHHHH-----HHhhhhHHHHHHHHHHhhh---c-------------
Confidence 456677788888888888888888 34467766644 7778888888888776422 1
Q ss_pred hhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--H
Q 003047 739 WRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEAT--L 816 (854)
Q Consensus 739 ~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~--~ 816 (854)
.+..+..++..|..+|.+++|+.+++++|.++|.+..+. +
T Consensus 1279 --------------------------------------~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftEL 1320 (1630)
T 1xi4_A 1279 --------------------------------------HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL 1320 (1630)
T ss_pred --------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHH
Confidence 234455788899999999999999999999998885555 7
Q ss_pred HHHHHHHhcCCHHHHHHHHHh
Q 003047 817 TAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 817 l~~y~~L~~G~~~eA~~~lk~ 837 (854)
...|...+-++..+++..+.+
T Consensus 1321 aiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 778888889999999998877
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.55 E-value=4.2e-14 Score=146.43 Aligned_cols=147 Identities=16% Similarity=0.050 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--------cCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc------c-C
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNI--------ARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR------T-E 388 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~--------~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~------~-d 388 (854)
....+.+|..+|++++|++.+++++.+ . |....+++.+|.++...|++++|+++|++++.. . .
T Consensus 88 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 88 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH--PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 334577888899999999999999998 4 777889999999999999999999999999982 1 4
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcc--c-------------------C---C--ccc-----ccc-
Q 003047 389 MGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLR--K-------------------D---K--PLK-----LLT- 436 (854)
Q Consensus 389 p~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~--~-------------------~---~--~l~-----~~~- 436 (854)
| ....++.++|.+|..+|++++|+.+|++++...+... . . . .+. ...
T Consensus 166 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 166 P-NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp H-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred H-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 4 4577899999999999999999999999999743210 0 0 0 000 000
Q ss_pred -ccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Q 003047 437 -FSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF 473 (854)
Q Consensus 437 -~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~ 473 (854)
...+....+++++|.+|...|++++|+.+|++++++.
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 0123456788999999999999999999999999764
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.55 E-value=4e-14 Score=170.44 Aligned_cols=198 Identities=12% Similarity=0.011 Sum_probs=157.8
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhh--------hccCCCchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLY--------QNIEPIDETTALQICLLLLDVALACHDAFRSADVLIYLEK 213 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~--------~~~~~~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek 213 (854)
+|+++..++..| +..|+|++|++.|++++ +..+...+ +++.++.+|...|++++|+ ..|++
T Consensus 390 ~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~-----~~~~~a~~~~~~g~~~~A~---~~~~~ 458 (681)
T 2pzi_A 390 DPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVE-----LPLMEVRALLDLGDVAKAT---RKLDD 458 (681)
T ss_dssp CTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSH-----HHHHHHHHHHHHTCHHHHH---HHHHH
T ss_pred CCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchh-----HHHHHHHHHHhcCCHHHHH---HHHHH
Confidence 566666777767 88999999999999999 53333223 5888999999999999998 56787
Q ss_pred hhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCC
Q 003047 214 AFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQN 293 (854)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (854)
++.+. ++.
T Consensus 459 al~~~----p~~-------------------------------------------------------------------- 466 (681)
T 2pzi_A 459 LAERV----GWR-------------------------------------------------------------------- 466 (681)
T ss_dssp HHHHH----CCC--------------------------------------------------------------------
T ss_pred HhccC----cch--------------------------------------------------------------------
Confidence 77653 110
Q ss_pred CCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCH
Q 003047 294 LTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNH 373 (854)
Q Consensus 294 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~ 373 (854)
...++.++.+|..+|++++|++.+++++.++ |+++.+++.+|.++...|++
T Consensus 467 ---------------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~ 517 (681)
T 2pzi_A 467 ---------------------------WRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNT 517 (681)
T ss_dssp ---------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCC
T ss_pred ---------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCh
Confidence 1144557888899999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHH
Q 003047 374 RKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQY 453 (854)
Q Consensus 374 ~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~l 453 (854)
++ ++.|+++++ .+|. .+.+++++|.+|..+|++++|+.+|++++++ .+....+++++|.++
T Consensus 518 ~~-~~~~~~al~-~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----------------~P~~~~a~~~~~~~~ 578 (681)
T 2pzi_A 518 DE-HKFYQTVWS-TNDG-VISAAFGLARARSAEGDRVGAVRTLDEVPPT----------------SRHFTTARLTSAVTL 578 (681)
T ss_dssp CT-TCHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT----------------STTHHHHHHHHHHHT
T ss_pred HH-HHHHHHHHH-hCCc-hHHHHHHHHHHHHHcCCHHHHHHHHHhhccc----------------CcccHHHHHHHHHHH
Confidence 99 999999999 7895 6889999999999999999999999999998 345678999999999
Q ss_pred HHCCCcHHH-HHHHHHHH
Q 003047 454 LACGKPVLA-ARCFQKSS 470 (854)
Q Consensus 454 l~~Gk~eeA-l~~y~kAL 470 (854)
+..+++++| ...+.+++
T Consensus 579 ~~~~~~~~~~~~~~~~A~ 596 (681)
T 2pzi_A 579 LSGRSTSEVTEEQIRDAA 596 (681)
T ss_dssp C-------CCHHHHHHHH
T ss_pred HccCCCCCCCHHHHHHHH
Confidence 887774443 33343333
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.55 E-value=7.5e-14 Score=144.56 Aligned_cols=245 Identities=15% Similarity=0.058 Sum_probs=165.7
Q ss_pred HcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCCCCC
Q 003047 39 QSRKFDECLDLLKQLLDK--------KPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEGGGN 110 (854)
Q Consensus 39 ~~g~y~~Al~~l~~~l~~--------~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 110 (854)
..|++++|+.+|++++++ +|..+.+++++|.+++..++ +.+++..+.+++..... .
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~al~~~~~-----~----- 76 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK------YKEAAHLLNDALAIREK-----T----- 76 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHH-----H-----
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHccc------HHHHHHHHHHHHHHHHH-----H-----
Confidence 345555666666666552 36678999999999887654 34456666665532100 0
Q ss_pred CCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCC---chhhHHHH
Q 003047 111 IGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPI---DETTALQI 187 (854)
Q Consensus 111 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~---~e~~~~~~ 187 (854)
...+++..+..++++|.+|..+|+|++|+++|++++...+.. ++.....+
T Consensus 77 ---------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 129 (283)
T 3edt_B 77 ---------------------------LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQ 129 (283)
T ss_dssp ---------------------------TCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ---------------------------cCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 011256788899999999999999999999999999864322 11233457
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhh
Q 003047 188 CLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENAL 267 (854)
Q Consensus 188 ~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (854)
+..++.+|...|++++|+ .++++++.+.....+..
T Consensus 130 ~~~la~~~~~~g~~~~A~---~~~~~al~~~~~~~~~~------------------------------------------ 164 (283)
T 3edt_B 130 LNNLALLCQNQGKAEEVE---YYYRRALEIYATRLGPD------------------------------------------ 164 (283)
T ss_dssp HHHHHHHHHTTTCHHHHH---HHHHHHHHHHHHHSCTT------------------------------------------
T ss_pred HHHHHHHHHHcCCHHHHH---HHHHHHHHHHHHhcCCC------------------------------------------
Confidence 888999999999999998 56787776531110000
Q ss_pred hhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 003047 268 SRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLA 347 (854)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~a 347 (854)
...........+.+|..+|++++|++.++++
T Consensus 165 -------------------------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 165 -------------------------------------------------DPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp -------------------------------------------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -------------------------------------------------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0001123344688889999999999999999
Q ss_pred HHhc-------CCCCCHHHHHHHHHHHHHhcC------HHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHH
Q 003047 348 MNIA-------RGKDSSLALFLKSQLEYARRN------HRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSV 414 (854)
Q Consensus 348 l~~~-------~~P~~~~a~~lla~ly~~~g~------~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~ 414 (854)
+.+. ..|.....+...+..+...+. +.++...+..... ..| ..+.++.++|.+|..+|++++|+.
T Consensus 196 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~la~~~~~~g~~~~A~~ 273 (283)
T 3edt_B 196 LTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSP-TVNTTLRSLGALYRRQGKLEAAHT 273 (283)
T ss_dssp HHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCH-HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCH-HHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9983 015566677777777776554 4455555555444 345 457789999999999999999999
Q ss_pred HHHHHHHh
Q 003047 415 FLSKALSN 422 (854)
Q Consensus 415 ~f~kAL~~ 422 (854)
+|++++++
T Consensus 274 ~~~~al~~ 281 (283)
T 3edt_B 274 LEDCASRN 281 (283)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99999975
No 91
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.54 E-value=2e-14 Score=139.05 Aligned_cols=127 Identities=13% Similarity=0.065 Sum_probs=113.8
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003047 342 REVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALS 421 (854)
Q Consensus 342 ~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~ 421 (854)
..+++++.++ |++..+++.+|.+++..|++++|+.+|++++. .+|. ++.+|+++|.+|..+|++++|+.+|++++.
T Consensus 8 ~~~~~al~~~--p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 8 GTIAMLNEIS--SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV-LDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp CSHHHHTTCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHcCC--HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH-cCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3567888999 99999999999999999999999999999999 7884 688999999999999999999999999999
Q ss_pred hchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 422 NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 422 ~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+ .|.++.+++++|.+|..+|++++|+.+|++++.+.|+++..+..+..+..
T Consensus 84 l----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 134 (148)
T 2vgx_A 84 M----------------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS 134 (148)
T ss_dssp H----------------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred c----------------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHH
Confidence 8 34567899999999999999999999999999999999877554444433
No 92
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.52 E-value=1.1e-13 Score=136.49 Aligned_cols=144 Identities=13% Similarity=0.036 Sum_probs=125.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYY 404 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~ 404 (854)
+.++..++..|++++|+..+++++..+ |+++.+++.+|.++...|++++|+++|++++. .+| . +.++..++.+..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~-~~p-~-~~~~~~~~~~~~ 84 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPL-EYQ-D-NSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG-GGC-C-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh-ccC-C-hHHHHHHHHHHH
Confidence 446888999999999999999999999 99999999999999999999999999999998 677 3 455655665533
Q ss_pred -HcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC--HHHHH
Q 003047 405 -QLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ--PLLWL 481 (854)
Q Consensus 405 -~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~--~~aw~ 481 (854)
..++..+|+..|++++.. .|.+..+++++|.++...|++++|+.+|++++.++|+. +.+|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~----------------~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~ 148 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAA----------------NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKK 148 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHH
T ss_pred HhhcccchHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHH
Confidence 334555689999999998 35568999999999999999999999999999999986 66999
Q ss_pred HHHHHHHH
Q 003047 482 RLAECCLM 489 (854)
Q Consensus 482 ~La~~~i~ 489 (854)
.||.++..
T Consensus 149 ~l~~~~~~ 156 (176)
T 2r5s_A 149 TFMDILSA 156 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999884
No 93
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.52 E-value=4.4e-14 Score=134.61 Aligned_cols=127 Identities=15% Similarity=0.065 Sum_probs=112.2
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003047 342 REVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALS 421 (854)
Q Consensus 342 ~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~ 421 (854)
..+++++.++ |++..+++.+|..++..|++++|+++|++++. .+|. ++.+|.++|.+|..+|++++|+.+|++++.
T Consensus 5 ~~l~~al~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 5 GTLAMLRGLS--EDTLEQLYALGFNQYQAGKWDDAQKIFQALCM-LDHY-DARYFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp ----CCTTCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHcCC--HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH-hCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3566778888 99999999999999999999999999999999 7884 688999999999999999999999999999
Q ss_pred hchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 422 NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 422 ~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+ .|.++.+++++|.+|..+|++++|+.+|++++.++|+++..+..+..+..
T Consensus 81 ~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 81 M----------------DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp H----------------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred c----------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 8 34567899999999999999999999999999999999887766665554
No 94
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.51 E-value=1.6e-13 Score=127.01 Aligned_cols=117 Identities=8% Similarity=-0.038 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|..+..++.+|..++..|+|++|+++|++++. .+|. .+.+++++|.+|..+|++++|+.+|++++.+
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------- 67 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIK-RAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEK----------- 67 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------
Confidence 45567899999999999999999999999999 7884 6889999999999999999999999999998
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc------CCCHHHHHHHHHHHH
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF------YKQPLLWLRLAECCL 488 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~------P~~~~aw~~La~~~i 488 (854)
.|....+++++|.++..+|++++|+.+|++++.++ |+++.+|..++.|..
T Consensus 68 -----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 68 -----DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred -----CCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999 999999999998765
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.50 E-value=2.8e-12 Score=139.66 Aligned_cols=240 Identities=10% Similarity=-0.046 Sum_probs=192.9
Q ss_pred hhHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhc--CHHHHHHHHHHhhhccCCCcc
Q 003047 316 TVDLKLKLQLYKVRFLLLTR-NLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARR--NHRKAIKLLLALSNRTEMGIS 392 (854)
Q Consensus 316 ~~~~~~~l~l~K~~lyl~~~-~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g--~~~kAl~~l~kal~~~dp~~~ 392 (854)
.++|+....++++. +..+ ..++|++...+++.++ |++..+++.++.+....+ +++++++++.+++. .+|. +
T Consensus 29 ~~~y~~~~~~~~a~--~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~-~nPk-~ 102 (306)
T 3dra_A 29 DEDYKQIMGLLLAL--MKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIAL-DNEK-N 102 (306)
T ss_dssp CHHHHHHHHHHHHH--HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH-HCTT-C
T ss_pred CHHHHHHHHHHHHH--HHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH-HCcc-c
Confidence 46677666665443 3444 4468999999999999 999999999999999999 99999999999999 7895 5
Q ss_pred HHHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcH--HHH
Q 003047 393 SMFNNNLGCIY----YQL---AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPV--LAA 463 (854)
Q Consensus 393 a~~~nnLG~iy----~~~---g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~e--eAl 463 (854)
..+|+..+.++ ... +++++++.++.++|.. .+.+..+|++.+.++...|+++ +++
T Consensus 103 y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~----------------~pkny~aW~~R~~vl~~l~~~~~~~EL 166 (306)
T 3dra_A 103 YQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS----------------DPKNHHVWSYRKWLVDTFDLHNDAKEL 166 (306)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhcccChHHHH
Confidence 67999999999 777 8999999999999998 4667899999999999999998 999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCC
Q 003047 464 RCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSL 543 (854)
Q Consensus 464 ~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~ 543 (854)
+++.+++.++|.|..+|.+.+.+....++. .
T Consensus 167 ~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~--------------------------------------~----------- 197 (306)
T 3dra_A 167 SFVDKVIDTDLKNNSAWSHRFFLLFSKKHL--------------------------------------A----------- 197 (306)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHSSGGG--------------------------------------C-----------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcccc--------------------------------------c-----------
Confidence 999999999999999999999876511000 0
Q ss_pred CCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCC
Q 003047 544 GSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGD 623 (854)
Q Consensus 544 ~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd 623 (854)
+...++++..++++++.++|.+..
T Consensus 198 -----~~~~~~eEl~~~~~aI~~~p~n~S--------------------------------------------------- 221 (306)
T 3dra_A 198 -----TDNTIDEELNYVKDKIVKCPQNPS--------------------------------------------------- 221 (306)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCSSCHH---------------------------------------------------
T ss_pred -----hhhhHHHHHHHHHHHHHhCCCCcc---------------------------------------------------
Confidence 001268899999999999999652
Q ss_pred cccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHc-C---CCChHHHHHHHHH
Q 003047 624 AKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVKAL-AAARSLLE-L---PDCSRIYIFLGHI 698 (854)
Q Consensus 624 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al-~~~~~lL~-~---p~~~~~~~~la~l 698 (854)
++..++.++..+|++..++ ..+.+++. . +..+-++.++|.+
T Consensus 222 ----------------------------------aW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~ 267 (306)
T 3dra_A 222 ----------------------------------TWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKI 267 (306)
T ss_dssp ----------------------------------HHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 3455666777777765544 45566665 2 5677788788776
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhh
Q 003047 699 YAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 699 Y~aeAl~~lgr~~eAl~~l~~~l 721 (854)
|. ..|+.++|+++++...
T Consensus 268 ~~-----~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 268 YT-----QQKKYNESRTVYDLLK 285 (306)
T ss_dssp HH-----HTTCHHHHHHHHHHHH
T ss_pred HH-----ccCCHHHHHHHHHHHH
Confidence 65 5788888888888877
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.49 E-value=9e-13 Score=135.49 Aligned_cols=163 Identities=10% Similarity=-0.051 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCcc--HHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS---LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGIS--SMFNN 397 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~---~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~--a~~~n 397 (854)
..+.++..++..|++++|++.+++++... |+++ .+++.+|.+|+..|++++|++.|+++++ ..|... +.+++
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~-~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR-LNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HCcCCCcHHHHHH
Confidence 34557888999999999999999999999 9874 7899999999999999999999999999 567432 34788
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHHhchhcccC-CccccccccCCccHHHHHHHHHHHHHCCC
Q 003047 398 NLGCIYYQ------------------LAKYHTSSVFLSKALSNSASLRKD-KPLKLLTFSQDKSLLITYNCGLQYLACGK 458 (854)
Q Consensus 398 nLG~iy~~------------------~g~~~eAi~~f~kAL~~~~~l~~~-~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk 458 (854)
.+|.+|.. +|++++|+..|++++...|+-..- .................+.+|.+|+..|+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 89999987 579999999999999985421100 00000000000112334688999999999
Q ss_pred cHHHHHHHHHHHHhcCCCH---HHHHHHHHHHH
Q 003047 459 PVLAARCFQKSSLVFYKQP---LLWLRLAECCL 488 (854)
Q Consensus 459 ~eeAl~~y~kAL~l~P~~~---~aw~~La~~~i 488 (854)
+++|+..|+++++.+|+++ .+|+.+|.|+.
T Consensus 163 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~ 195 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDYPDTQATRDALPLMENAYR 195 (225)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHH
Confidence 9999999999999999997 67999999988
No 97
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.49 E-value=4.6e-13 Score=156.92 Aligned_cols=136 Identities=13% Similarity=0.099 Sum_probs=110.5
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHH
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSS 413 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi 413 (854)
.|++++|++.++++++++ |++..+++.+|.++...|++++|+++|++++. .+|. ...+++++|.+|..+|++++|+
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLA-LHPG-HPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-TSTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 478899999999999999 99999999999999999999999999999999 7884 6889999999999999999999
Q ss_pred HHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003047 414 VFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 414 ~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~ 489 (854)
.+|+++++. .+.+..+++++|.+|...|++++|+++|+++++++|+++.+|.++|.++..
T Consensus 78 ~~~~~al~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 137 (568)
T 2vsy_A 78 VLLQQASDA----------------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR 137 (568)
T ss_dssp HHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999998 345678999999999999999999999999999999999999999999884
No 98
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.49 E-value=5.1e-13 Score=144.29 Aligned_cols=144 Identities=11% Similarity=0.054 Sum_probs=107.6
Q ss_pred hcCHHHHHHHHHHHHHhcC------CCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHH
Q 003047 334 TRNLKHAKREVKLAMNIAR------GKDSS---LALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLG 400 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~------~P~~~---~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG 400 (854)
+|++++|.+.++++.+... +|+.. ..+...|.+|...|++++|+++|.+++.. .++...+.+++++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555555555430 02222 23445578899999999999999999983 12223467899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC----
Q 003047 401 CIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ---- 476 (854)
Q Consensus 401 ~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~---- 476 (854)
.+|..+|++++|+.+|++|+.+.+.... ......++.++|.+|.. |++++|+.+|++++.+.|..
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~----------~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~ 152 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGT----------PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLR 152 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTC----------HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChh
Confidence 9999999999999999999998543321 01235788999999999 99999999999999999865
Q ss_pred --HHHHHHHHHHHH
Q 003047 477 --PLLWLRLAECCL 488 (854)
Q Consensus 477 --~~aw~~La~~~i 488 (854)
..+|.++|.++.
T Consensus 153 ~~~~~~~~lg~~~~ 166 (307)
T 2ifu_A 153 QAAELIGKASRLLV 166 (307)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 567888888877
No 99
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.48 E-value=2.9e-13 Score=131.70 Aligned_cols=117 Identities=14% Similarity=-0.018 Sum_probs=108.3
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|.++..++.+|.+++..|+|++|+++|++++. .+|. .+.+++++|.+|..+|++++|+.+|++++.+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------- 74 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALS-IAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVV----------- 74 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------
Confidence 56678999999999999999999999999999 7884 6889999999999999999999999999998
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+....+|+++|.+|..+|++++|+.+|++++.++|+++.+|++++.+.+
T Consensus 75 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 75 -----DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999888887665
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.47 E-value=2.6e-12 Score=116.96 Aligned_cols=132 Identities=20% Similarity=0.163 Sum_probs=120.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYY 404 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~ 404 (854)
+..+.+|...|++++|++.+++++... |++..+++.+|.++...|++++|++++++++. ..|. ...+++++|.+|.
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH-HCCC-chHHHHHHHHHHH
Confidence 345778888999999999999999999 99999999999999999999999999999998 6774 5778999999999
Q ss_pred HcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 405 QLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
..|++++|+.+|++++.. .+....+++.+|.++...|++++|+.+|++++.++|++
T Consensus 81 ~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALEL----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HhcCHHHHHHHHHHHHHh----------------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 999999999999999997 23456789999999999999999999999999999974
No 101
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.47 E-value=1.4e-13 Score=134.29 Aligned_cols=100 Identities=9% Similarity=-0.059 Sum_probs=88.9
Q ss_pred cCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHH
Q 003047 371 RNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCG 450 (854)
Q Consensus 371 g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG 450 (854)
+++-++-..|++++. .+| ..+.+++++|.+|.++|++++|+.+|++++.+ .|.++.+|+++|
T Consensus 16 ~~~~~~~~~l~~al~-l~p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----------------~P~~~~~~~~lg 77 (151)
T 3gyz_A 16 IDAINSGATLKDINA-IPD-DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY----------------DFYNVDYIMGLA 77 (151)
T ss_dssp HHHHHTSCCTGGGCC-SCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHH
T ss_pred HHHHHCCCCHHHHhC-CCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHH
Confidence 333344456677777 688 46889999999999999999999999999998 456789999999
Q ss_pred HHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 451 LQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 451 ~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+|..+|++++|+.+|++++.++|+++.+|+++|.|+.
T Consensus 78 ~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 78 AIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998
No 102
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.47 E-value=1.3e-12 Score=141.07 Aligned_cols=139 Identities=14% Similarity=0.027 Sum_probs=112.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCC-----CccHHHHHH
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDS----SLALFLKSQLEYARRNHRKAIKLLLALSNRTEM-----GISSMFNNN 398 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~----~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp-----~~~a~~~nn 398 (854)
+.+|..+|++++|++.+++++.+.+...+ ..++..+|.+|.. |++++|+++|++++.. .| .....++++
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~-~~~~~~~~~~~~~~~~ 160 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV-FENEERLRQAAELIGK 160 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH-HHhCCChhHHHHHHHH
Confidence 55677789999999999999999721222 4678899999999 9999999999999983 22 122578999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH
Q 003047 399 LGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 399 LG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~ 478 (854)
+|.+|..+|+|++|+.+|++++.+.++... ......+++++|.+++.+|++++|+.+|++++ ++|++..
T Consensus 161 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 161 ASRLLVRQQKFDEAAASLQKEKSMYKEMEN----------YPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 999999999999999999999998543210 01124578899999999999999999999999 9998754
Q ss_pred H
Q 003047 479 L 479 (854)
Q Consensus 479 a 479 (854)
.
T Consensus 230 ~ 230 (307)
T 2ifu_A 230 S 230 (307)
T ss_dssp S
T ss_pred C
Confidence 3
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.46 E-value=3.4e-12 Score=131.18 Aligned_cols=139 Identities=9% Similarity=-0.011 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHH------------------hcCHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSL---ALFLKSQLEYA------------------RRNHRKAIKLLL 381 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~---a~~lla~ly~~------------------~g~~~kAl~~l~ 381 (854)
..+..+.+|..+|++++|++.++++++.+ |+++. +++.+|.+++. .|++++|++.|+
T Consensus 43 a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 120 (225)
T 2yhc_A 43 VQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS 120 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence 44556888999999999999999999999 99875 88999999987 579999999999
Q ss_pred HhhhccCCCccHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHH
Q 003047 382 ALSNRTEMGISSMFN-----------------NNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLL 444 (854)
Q Consensus 382 kal~~~dp~~~a~~~-----------------nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~ 444 (854)
+++. ..|+. +.++ ..+|.+|.++|++++|+..|++++...|+- +...+
T Consensus 121 ~~l~-~~P~~-~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-------------~~~~~ 185 (225)
T 2yhc_A 121 KLVR-GYPNS-QYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDT-------------QATRD 185 (225)
T ss_dssp HHHT-TCTTC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTS-------------HHHHH
T ss_pred HHHH-HCcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCC-------------CccHH
Confidence 9999 67753 3222 568999999999999999999999984311 12347
Q ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH
Q 003047 445 ITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 445 ~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~ 478 (854)
+++.+|.+|..+|++++|+++|+++....|++..
T Consensus 186 a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 186 ALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 8999999999999999999999999999988643
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.46 E-value=9.3e-13 Score=141.19 Aligned_cols=149 Identities=11% Similarity=-0.032 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+..+..++..|++++|++.+++++..+ |+++.+++.+|.++...|++++|+..|++++. .+| .....+...+..
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-~~p-~~~~~~~~~~~~ 194 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-QDQ-DTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-GGC-SHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-hhc-chHHHHHHHHHH
Confidence 45667899999999999999999999999 99999999999999999999999999999999 688 456667777888
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC--HHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ--PLLW 480 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~--~~aw 480 (854)
+...++.++|+..|++++.. .|.+..+++++|.+|...|++++|+..|++++.++|++ +.+|
T Consensus 195 l~~~~~~~~a~~~l~~al~~----------------~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAE----------------NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred HHhhcccCccHHHHHHHHhc----------------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 99999999999999999998 45678999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHH
Q 003047 481 LRLAECCLMAL 491 (854)
Q Consensus 481 ~~La~~~i~~~ 491 (854)
.+|+.++...+
T Consensus 259 ~~l~~~~~~~g 269 (287)
T 3qou_A 259 XTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHcC
Confidence 99999988533
No 105
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.45 E-value=5.4e-13 Score=125.32 Aligned_cols=119 Identities=20% Similarity=0.220 Sum_probs=100.4
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccc
Q 003047 355 DSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKL 434 (854)
Q Consensus 355 ~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~ 434 (854)
+...++..+|+.++..|+|++|+++|++++. .+|. .+.+|+++|.+|..+|++++|+.+|++++.+.+.....
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~-~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~----- 78 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIE-LDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD----- 78 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh-----
Confidence 3456788999999999999999999999999 7995 68899999999999999999999999999986543210
Q ss_pred ccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003047 435 LTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAE 485 (854)
Q Consensus 435 ~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~ 485 (854)
......+++++|.++..+|++++|+++|++++.+.|+ +.....|.+
T Consensus 79 ----~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~ 124 (127)
T 4gcn_A 79 ----YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKE 124 (127)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHH
Confidence 0113568999999999999999999999999999885 666555544
No 106
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.45 E-value=7e-13 Score=121.82 Aligned_cols=118 Identities=11% Similarity=0.004 Sum_probs=109.8
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|.+..+++.+|.+++..|++++|+++|++++. .+|. ...+++++|.+|..+|++++|+.+|++++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----------- 79 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIK-RNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQL----------- 79 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT-TCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-----------
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----------
Confidence 78889999999999999999999999999999 6884 5789999999999999999999999999998
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~ 489 (854)
.+....+++++|.++...|++++|+.+|++++.++|+++.+|..++.++..
T Consensus 80 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 80 -----EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred -----CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 344678999999999999999999999999999999999999999999884
No 107
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.45 E-value=1.1e-13 Score=152.25 Aligned_cols=140 Identities=16% Similarity=0.052 Sum_probs=125.8
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCcc--------------HHHHHHH
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGIS--------------SMFNNNL 399 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~--------------a~~~nnL 399 (854)
.+++++|++.++.++... |+++.+++.+|.+++..|+|++|+++|++++. ..|... ..+++++
T Consensus 126 L~~~~~A~~~~~~a~~~~--p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~-~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK--LEQSTIVKERGTVYFKEGKYKQALLQYKKIVS-WLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEECCCCGGGCCHHHH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HhhccccCChHHHHHHHHHHHHHHHHH
Confidence 345566777777778888 99999999999999999999999999999999 677543 5899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 400 GCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 400 G~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
|.+|..+|++++|+.+|+++|.+ .+....+++++|.+|+.+|++++|+.+|++++.++|+++.+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a 266 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALEL----------------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Confidence 99999999999999999999998 34567899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 003047 480 WLRLAECCLMALE 492 (854)
Q Consensus 480 w~~La~~~i~~~~ 492 (854)
|..|+.|+...++
T Consensus 267 ~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 267 KTQLAVCQQRIRR 279 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999986554
No 108
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.44 E-value=9.5e-12 Score=132.96 Aligned_cols=107 Identities=14% Similarity=0.075 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhc--cCCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNR--TEMGI---SSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPL 432 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~--~dp~~---~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l 432 (854)
.+++.+|.+|...|++++|+++|++++.. ..|.. ...+++|+|.+|..+|+|++|+.+|++++.+.+....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~---- 231 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS---- 231 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc----
Confidence 46677889999999999999999999842 23321 2268999999999999999999999999998532210
Q ss_pred ccccccCCccHHHHHHHHHHHHHCCCcHHH-HHHHHHHHHhcC
Q 003047 433 KLLTFSQDKSLLITYNCGLQYLACGKPVLA-ARCFQKSSLVFY 474 (854)
Q Consensus 433 ~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeA-l~~y~kAL~l~P 474 (854)
......+++++|.+|..+|++++| ..+|++++.+..
T Consensus 232 ------~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 232 ------MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp ------CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 112368899999999999999999 788999998764
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.44 E-value=5.9e-13 Score=131.36 Aligned_cols=116 Identities=8% Similarity=-0.060 Sum_probs=95.6
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|.....++.+|..++..|++++|+..|++++. .+|+ ++.+++++|.+|..+|++++|+.+|++++..
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~----------- 69 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSD-ELQS-RGDVKLAKADCLLETKQFELAQELLATIPLE----------- 69 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCH-HHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-----------
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-----------
Confidence 55566789999999999999999999999999 7884 6889999999999999999999999999887
Q ss_pred cccccCCccHHHHHHHHHHH-HHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 434 LLTFSQDKSLLITYNCGLQY-LACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~l-l~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+ ++..+..++.+. ...++..+|+.+|++++.++|+++.+|+.+|.++.
T Consensus 70 -----~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~ 119 (176)
T 2r5s_A 70 -----YQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYN 119 (176)
T ss_dssp -----GC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred -----cC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 23 344444444332 33345567899999999999999999999999988
No 110
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.43 E-value=2e-12 Score=117.77 Aligned_cols=119 Identities=13% Similarity=0.041 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|+++..++.+|..++..|++++|+++|++++. .+|. .+.++.++|.+|..+|++++|+.+|++++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------- 75 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIE-LNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICI----------- 75 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHH-cCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-----------
Confidence 66778999999999999999999999999999 6784 5788999999999999999999999999998
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMA 490 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~ 490 (854)
.+....+++++|.++...|++++|+.+|++++.+.|+++.+|..++.++...
T Consensus 76 -----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 76 -----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred -----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 2445789999999999999999999999999999999999999999999853
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.43 E-value=1.8e-12 Score=130.26 Aligned_cols=158 Identities=15% Similarity=0.002 Sum_probs=127.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHH
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIY 403 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy 403 (854)
.+.++.+|...|++++|++.+++++ . | ++.+++.+|.++...|++++|+++|++++. .+|. .+.+++++|.+|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~--~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~-~~~~~~~lg~~~ 81 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--D--P-HSRICFNIGCMYTILKNMTEAEKAFTRSIN-RDKH-LAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--S--C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--C--C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcc-chHHHHHHHHHH
Confidence 4567889999999999999999884 5 5 789999999999999999999999999999 6884 688999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHH
Q 003047 404 YQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRL 483 (854)
Q Consensus 404 ~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~L 483 (854)
..+|++++|+.+|++++...+....-.-........+....+++++|.++...|++++|+.+|++++.+.|++.......
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 161 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 161 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHH
Confidence 99999999999999999984421100000000001223468999999999999999999999999999999987666666
Q ss_pred HHHHH
Q 003047 484 AECCL 488 (854)
Q Consensus 484 a~~~i 488 (854)
+...+
T Consensus 162 a~~~~ 166 (213)
T 1hh8_A 162 AMECV 166 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 112
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.43 E-value=4.7e-13 Score=131.29 Aligned_cols=132 Identities=10% Similarity=0.014 Sum_probs=116.9
Q ss_pred HhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH-HHHcCCH--
Q 003047 333 LTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI-YYQLAKY-- 409 (854)
Q Consensus 333 ~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i-y~~~g~~-- 409 (854)
..|++++|++.+++++..+ |+++.+++.+|.+|+..|++++|+++|++++. .+|. .+.++.++|.+ |...|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ-LRGE-NAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHCS-CHHHHHHHHHHHHHHTTTCCC
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCC-CHHHHHHHHHHHHHhcCCcch
Confidence 4688899999999999999 99999999999999999999999999999999 6784 57899999999 8899999
Q ss_pred HHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHH
Q 003047 410 HTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLA 484 (854)
Q Consensus 410 ~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La 484 (854)
++|+.+|++++.. .+....+++++|.++...|++++|+.+|++++.++|+++..+..+.
T Consensus 98 ~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 98 AQTRAMIDKALAL----------------DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE 156 (177)
T ss_dssp HHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 9999999999998 3456789999999999999999999999999999999977665444
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.43 E-value=3e-11 Score=131.51 Aligned_cols=233 Identities=9% Similarity=-0.037 Sum_probs=186.5
Q ss_pred cCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHH
Q 003047 371 RNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA--KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYN 448 (854)
Q Consensus 371 g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g--~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~n 448 (854)
...++|++++.++|. .+|. ...+|+..|.+...+| ++++++.++.++|.. .|....+|++
T Consensus 47 e~s~~aL~~t~~~L~-~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~----------------nPk~y~aW~~ 108 (306)
T 3dra_A 47 EYSERALHITELGIN-ELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALD----------------NEKNYQIWNY 108 (306)
T ss_dssp CCSHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----------------CTTCCHHHHH
T ss_pred CCCHHHHHHHHHHHH-HCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH----------------CcccHHHHHH
Confidence 555799999999999 7995 6889999999999999 999999999999998 4667899999
Q ss_pred HHHHH----HHC---CCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeecccccccee
Q 003047 449 CGLQY----LAC---GKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYL 521 (854)
Q Consensus 449 LG~~l----l~~---Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l 521 (854)
.+.++ ... +++++++.++.+++.++|++..+|...+.+.. +.+
T Consensus 109 R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~---~l~--------------------------- 158 (306)
T 3dra_A 109 RQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVD---TFD--------------------------- 158 (306)
T ss_dssp HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---HTT---------------------------
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---Hhc---------------------------
Confidence 99999 777 78999999999999999999999999998766 210
Q ss_pred eeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCcccccccccccccccccc
Q 003047 522 VMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNH 601 (854)
Q Consensus 522 ~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (854)
.+ ..+.+..++.+++..+|....
T Consensus 159 ----------~~------------------~~~~EL~~~~~~i~~d~~N~s----------------------------- 181 (306)
T 3dra_A 159 ----------LH------------------NDAKELSFVDKVIDTDLKNNS----------------------------- 181 (306)
T ss_dssp ----------CT------------------TCHHHHHHHHHHHHHCTTCHH-----------------------------
T ss_pred ----------cc------------------ChHHHHHHHHHHHHhCCCCHH-----------------------------
Confidence 00 024689999999999888542
Q ss_pred cccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCC------HHHH
Q 003047 602 KSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMEN------PVKA 675 (854)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~------~~~A 675 (854)
++.+.++++..+|+ +.++
T Consensus 182 --------------------------------------------------------AW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 182 --------------------------------------------------------AWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp --------------------------------------------------------HHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred --------------------------------------------------------HHHHHHHHHHhccccchhhhHHHH
Confidence 35556777777777 8999
Q ss_pred HHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHH-HHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCC
Q 003047 676 LAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAE-HFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGG 753 (854)
Q Consensus 676 l~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 753 (854)
+.++++++. .|.+.+++.+++.++. .+|+..+++. ++.+.+. .+ +
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~-----~~~~~~~~~~~~~~~~~~--~~----------------------~---- 252 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHE-----RFDRSITQLEEFSLQFVD--LE----------------------K---- 252 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHH-----HTTCCGGGGHHHHHTTEE--GG----------------------G----
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHH-----hcCCChHHHHHHHHHHHh--cc----------------------C----
Confidence 999999997 9999999988887554 6788666555 4444441 10 0
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCHHHHH
Q 003047 754 PAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALS-ILPRSTEATL 816 (854)
Q Consensus 754 ~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~-~~P~~~~a~~ 816 (854)
..|. .+.++..||.++..+|+.++|.++++.+.+ .+|-....+.
T Consensus 253 ---------~~~~----------s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 253 ---------DQVT----------SSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWD 297 (306)
T ss_dssp ---------TEES----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred ---------CCCC----------CHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHH
Confidence 0021 355667799999999999999999999997 7997754444
No 114
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.42 E-value=2.8e-12 Score=120.41 Aligned_cols=111 Identities=6% Similarity=-0.103 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
.+..++..|..+|++++|++.++++++++ |+++.+++.+|.+|+.+|++++|++.|++++. .+|. .+.+|+++|.+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~-~~~a~~~lg~~ 90 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIR-LDSK-FIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH-hhhh-hhHHHHHHHHH
Confidence 34457889999999999999999999999 99999999999999999999999999999999 7884 68899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQY 453 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~l 453 (854)
|..+|++++|+.+|+++|++ .|.+.+++.+++.++
T Consensus 91 ~~~~~~~~~A~~~~~~al~l----------------~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV----------------DPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHH----------------CcCCHHHHHHHHHhc
Confidence 99999999999999999999 345678888888764
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.41 E-value=3.3e-12 Score=136.89 Aligned_cols=117 Identities=10% Similarity=-0.034 Sum_probs=107.7
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|++...++.+|..+...|++++|+..|++++. .+|+ ++.+++++|.+|..+|++++|+..|++++...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---------- 181 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ-LSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD---------- 181 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG----------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh----------
Confidence 89999999999999999999999999999999 7995 68899999999999999999999999998872
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+.....+.+.+..+...++.++|+..|++++.++|+++.+|++||.++.
T Consensus 182 ------p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~ 230 (287)
T 3qou_A 182 ------QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLH 230 (287)
T ss_dssp ------CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ------cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3334566788888999999999999999999999999999999999988
No 116
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.40 E-value=9.5e-13 Score=132.06 Aligned_cols=141 Identities=13% Similarity=0.023 Sum_probs=118.4
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCcc---------------HHHHHH
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGIS---------------SMFNNN 398 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~---------------a~~~nn 398 (854)
.+.++++.+.++...... +.....+..+|..++..|+|++|+++|.+++. ..|... ..++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALD-FFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp -----CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhcccccchhhHHHHHHHHHHHHHHH
Confidence 355555665555555555 66678899999999999999999999999998 566433 278999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH
Q 003047 399 LGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 399 LG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~ 478 (854)
+|.+|..+|++++|+.+|++++.. .+....+++++|.+|..+|++++|+.+|++++.++|+++.
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 157 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKI----------------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh----------------CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH
Confidence 999999999999999999999998 3456789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 003047 479 LWLRLAECCLMALEK 493 (854)
Q Consensus 479 aw~~La~~~i~~~~~ 493 (854)
+|..++.|+....+.
T Consensus 158 ~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 158 IRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999865554
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.40 E-value=1.2e-11 Score=132.08 Aligned_cols=187 Identities=13% Similarity=0.054 Sum_probs=138.2
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhh-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCC
Q 003047 145 VSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETT-ALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQV 223 (854)
Q Consensus 145 ~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~-~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~ 223 (854)
....+.+.+..++..|+|++|+++|++++...+...+.. ...++..++.+|...+++++|+ .++++++.+.....
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai---~~~~~al~~~~~~~- 149 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCI---LELKKLLNQQLTGI- 149 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHH---HHHHHHHHTCCCCS-
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHH---HHHHHHHHHhcccc-
Confidence 344555678999999999999999999998554444432 2334555789999999999997 68888886531100
Q ss_pred CCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccc
Q 003047 224 DSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSN 303 (854)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (854)
+ .
T Consensus 150 ~-------------------------------~----------------------------------------------- 151 (293)
T 3u3w_A 150 D-------------------------------V----------------------------------------------- 151 (293)
T ss_dssp C-------------------------------T-----------------------------------------------
T ss_pred c-------------------------------H-----------------------------------------------
Confidence 0 0
Q ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 003047 304 ELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLAL 383 (854)
Q Consensus 304 ~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~ka 383 (854)
.....++..+|.+|...|++++|+++|+++
T Consensus 152 --------------------------------------------------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 152 --------------------------------------------------YQNLYIENAIANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp --------------------------------------------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 000134566778888888888888888888
Q ss_pred hhc-----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC
Q 003047 384 SNR-----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK 458 (854)
Q Consensus 384 l~~-----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk 458 (854)
+.. .++.....+++|+|.+|..+|+|++|+.+|++++.+.+.... ......+++++|.+|..+|+
T Consensus 182 l~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~lg~~~~~~g~ 251 (293)
T 3u3w_A 182 LKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS----------MALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB----------CTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc----------HHHHHHHHHHHHHHHHHhCC
Confidence 841 122234568899999999999999999999999998543321 12247899999999999996
Q ss_pred -cHHHHHHHHHHHHhc
Q 003047 459 -PVLAARCFQKSSLVF 473 (854)
Q Consensus 459 -~eeAl~~y~kAL~l~ 473 (854)
+++|+++|++|+.+.
T Consensus 252 ~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 252 EEAEIEDAYKKASFFF 267 (293)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 699999999998765
No 118
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.39 E-value=6.4e-12 Score=112.38 Aligned_cols=114 Identities=11% Similarity=-0.050 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccc
Q 003047 356 SSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLL 435 (854)
Q Consensus 356 ~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~ 435 (854)
.+..++.+|..++..|++++|+++|++++. .+|. .+.++.++|.+|..+|++++|+.+|++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------- 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIK-LDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL------------- 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH-HCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-------------
Confidence 457889999999999999999999999999 6884 5789999999999999999999999999998
Q ss_pred cccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 436 TFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 436 ~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
.+....+++++|.++...|++++|+.+|++++.++|+++.+|..++.+.
T Consensus 68 ---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 68 ---KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp ---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 3445789999999999999999999999999999999999999999875
No 119
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.39 E-value=3.6e-12 Score=123.61 Aligned_cols=118 Identities=12% Similarity=0.028 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc------------------CCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003047 357 SLALFLKSQLEYARRNHRKAIKLLLALSNRT------------------EMGISSMFNNNLGCIYYQLAKYHTSSVFLSK 418 (854)
Q Consensus 357 ~~a~~lla~ly~~~g~~~kAl~~l~kal~~~------------------dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~k 418 (854)
+..+..+|+.++..|+|++|+++|.+++. . +| ....+|+++|.+|..+|++++|+.+|++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALT-RLDTLILREKPGEPEWVELDR-KNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHHHTSCTTSHHHHHHHH-THHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhcccCCCCHHHHHHHHH-HHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 46778899999999999999999999998 4 45 3467899999999999999999999999
Q ss_pred HHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHh
Q 003047 419 ALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP-LLWLRLAECCLMALE 492 (854)
Q Consensus 419 AL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~-~aw~~La~~~i~~~~ 492 (854)
+|.+ .|....+|+++|.+|..+|++++|+.+|++++.++|+++ .++..|+.|......
T Consensus 89 al~~----------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 89 VLKR----------------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHH----------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHhc----------------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9998 345688999999999999999999999999999999999 778888887765444
No 120
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.39 E-value=4e-12 Score=136.32 Aligned_cols=231 Identities=12% Similarity=0.037 Sum_probs=175.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHH-------HHHHHHccCHHHHHHHHHHHHHhhhcccc
Q 003047 148 AKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLL-------LDVALACHDAFRSADVLIYLEKAFSVGCV 220 (854)
Q Consensus 148 ~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l-------~~vy~~~~~~~kA~~~l~~lek~l~~~~~ 220 (854)
-.+-.|+-+ .-+++..|.++|.+++...+..-| +.+.+ +.++...++..+++ -.+.+.+++.
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~D-----aw~g~~a~g~~~~~~L~~~~r~~~a~---~~~~~~l~l~-- 77 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACD-----AWIGRIRCGDTDRVTLFRAWYSRRNF---GQLSGSVQIS-- 77 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHH-----HHHHHHHTTCCCHHHHHHHHHTGGGT---THHHHTTTCC--
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhH-----HHHhHHHccCCcHHHHHHHHHHHHHH---HHHHHHhcCC--
Confidence 344557766 689999999999999996655555 46666 68888888887776 4567777664
Q ss_pred cCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCC
Q 003047 221 NQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLTRPVGL 300 (854)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (854)
+. ...
T Consensus 78 --p~------------------------------~l~------------------------------------------- 82 (282)
T 4f3v_A 78 --MS------------------------------TLN------------------------------------------- 82 (282)
T ss_dssp --GG------------------------------GGC-------------------------------------------
T ss_pred --hh------------------------------hhh-------------------------------------------
Confidence 10 000
Q ss_pred ccch-hhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 003047 301 SSNE-LSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKL 379 (854)
Q Consensus 301 ~~~~-~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~ 379 (854)
+..+ .| .|.+... ....+..+.+..+.+++..|++++|.+.+..++... |++. +++.+|.+++..+++++|+.+
T Consensus 83 a~~~~~g-~y~~~~~-~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~ 157 (282)
T 4f3v_A 83 ARIAIGG-LYGDITY-PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQ 157 (282)
T ss_dssp CEEECCT-TTCCCEE-ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhccCC-ccccccc-ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHH
Confidence 0111 11 0100000 111234467777999999999999999999999988 9999 999999999999999999999
Q ss_pred HHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccC-Cc-cHHHHHHHHHHHHHCC
Q 003047 380 LLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQ-DK-SLLITYNCGLQYLACG 457 (854)
Q Consensus 380 l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~-~~-~~~~~~nLG~~ll~~G 457 (854)
|+++....+|.....+++++|.++..+|++++|+.+|++++... . |. ..++++++|.++..+|
T Consensus 158 l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~---------------~~P~~~~da~~~~glaL~~lG 222 (282)
T 4f3v_A 158 VKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP---------------AGEACARAIAWYLAMARRSQG 222 (282)
T ss_dssp HTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST---------------TTTTTHHHHHHHHHHHHHHHT
T ss_pred HHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC---------------CCccccHHHHHHHHHHHHHcC
Confidence 99888722231124578889999999999999999999998640 1 22 4578999999999999
Q ss_pred CcHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003047 458 KPVLAARCFQKSSLVFYKQPLLWLRLAE 485 (854)
Q Consensus 458 k~eeAl~~y~kAL~l~P~~~~aw~~La~ 485 (854)
+.++|..+|++++..+|+ +.+|..|..
T Consensus 223 r~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 223 NESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp CHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 999999999999999999 998888863
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.39 E-value=6.8e-12 Score=134.08 Aligned_cols=151 Identities=13% Similarity=0.116 Sum_probs=125.1
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHhcCHHHHHHHHHHhhhc--cCCC--ccHHHH
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSL------ALFLKSQLEYARRNHRKAIKLLLALSNR--TEMG--ISSMFN 396 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~------a~~lla~ly~~~g~~~kAl~~l~kal~~--~dp~--~~a~~~ 396 (854)
+...++..+++++|.+.++++++.. |.++. ++..+|.++...+++++|+++|++++.. ..++ ....++
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccc--cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 4677889999999999999999988 77765 3446899999999999999999999983 1111 124579
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 397 NNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 397 nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
+++|.+|..+|++++|+.+|++++.....+... .+....+++|+|.+|..+|+|++|+.+|++++.+.++.
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDN---------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999875433111 12245689999999999999999999999999998665
Q ss_pred ------HHHHHHHHHHHH
Q 003047 477 ------PLLWLRLAECCL 488 (854)
Q Consensus 477 ------~~aw~~La~~~i 488 (854)
+.+|+++|.|+.
T Consensus 230 ~~~~~~~~~~~~lg~~~~ 247 (293)
T 3u3w_A 230 NSMALIGQLYYQRGECLR 247 (293)
T ss_dssp TBCTTHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 788999999988
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.38 E-value=1.3e-11 Score=111.34 Aligned_cols=118 Identities=19% Similarity=0.155 Sum_probs=106.6
Q ss_pred CCC-HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcc
Q 003047 354 KDS-SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPL 432 (854)
Q Consensus 354 P~~-~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l 432 (854)
|.. ..+++.+|.++...|++++|+++|++++. ..|. ...+++++|.+|...|++++|+.+|++++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---------- 72 (125)
T 1na0_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---------- 72 (125)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------
Confidence 655 78899999999999999999999999999 6774 5788999999999999999999999999997
Q ss_pred ccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003047 433 KLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 433 ~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~ 489 (854)
.+....+++++|.++...|++++|+.+|++++.+.|+++.++..++.++..
T Consensus 73 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 73 ------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred ------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 234578899999999999999999999999999999999999999998773
No 123
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.38 E-value=5.3e-12 Score=117.59 Aligned_cols=118 Identities=12% Similarity=-0.024 Sum_probs=109.1
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|.++..++.+|..++..|++++|+.+|++++. .+|. .+.+++++|.+|..+|++++|+.+|++++.+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----------- 72 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAIT-RNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL----------- 72 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh-hCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------
Confidence 88899999999999999999999999999999 7884 6789999999999999999999999999998
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHH
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYK-----QPLLWLRLAECCLM 489 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~-----~~~aw~~La~~~i~ 489 (854)
.+....+++++|.++...|++++|+.+|++++.+.|+ +..++..+..+...
T Consensus 73 -----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 73 -----DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred -----CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999 88888888877663
No 124
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1e-11 Score=116.41 Aligned_cols=116 Identities=13% Similarity=0.062 Sum_probs=107.5
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCcc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCC
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGIS---SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDK 430 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~---a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~ 430 (854)
|++...++.+|..++..|++++|+++|++++. .+|. . ..++.++|.+|..+|++++|+.+|++++..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------- 94 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALG-LDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-------- 94 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT-SCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-Hccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--------
Confidence 88999999999999999999999999999999 6774 3 678999999999999999999999999998
Q ss_pred ccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 431 PLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 431 ~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
.+....+++++|.++...|++++|+.+|++++.++|+++.+|..++.+.
T Consensus 95 --------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 95 --------DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp --------TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred --------CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 3446789999999999999999999999999999999999999988764
No 125
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.37 E-value=2.7e-11 Score=123.73 Aligned_cols=123 Identities=9% Similarity=-0.090 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC----CHHHHHH
Q 003047 339 HAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA----KYHTSSV 414 (854)
Q Consensus 339 ~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g----~~~eAi~ 414 (854)
+|++.++++.+. .++.+++.+|.+|...+++++|+++|+++.. . .++.++++||.+|.. + ++++|+.
T Consensus 4 eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~---g~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 4 EPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAA-Q---GDGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-T---TCHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred hHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-c---CCHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 466677777765 4899999999999999999999999999988 2 246789999999998 7 9999999
Q ss_pred HHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHhcC--CCHHHHHHHHHHHH
Q 003047 415 FLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLA----CGKPVLAARCFQKSSLVFY--KQPLLWLRLAECCL 488 (854)
Q Consensus 415 ~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~----~Gk~eeAl~~y~kAL~l~P--~~~~aw~~La~~~i 488 (854)
+|++|... ..+.+++++|.+|.. .+++++|+.+|+++++..| +++.++++||.++.
T Consensus 75 ~~~~A~~~------------------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~ 136 (212)
T 3rjv_A 75 LAEKAVEA------------------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA 136 (212)
T ss_dssp HHHHHHHT------------------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC------------------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence 99999775 357899999999998 8999999999999999998 46999999999988
No 126
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.36 E-value=3.1e-10 Score=124.59 Aligned_cols=176 Identities=7% Similarity=-0.033 Sum_probs=146.2
Q ss_pred HhcCHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC----------HHHHHHHHHHhhhccCCCccHHHHHHHHH
Q 003047 333 LTRNLK-HAKREVKLAMNIARGKDSSLALFLKSQLEYARRN----------HRKAIKLLLALSNRTEMGISSMFNNNLGC 401 (854)
Q Consensus 333 ~~~~~~-~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~----------~~kAl~~l~kal~~~dp~~~a~~~nnLG~ 401 (854)
..|.+. +|++....++.++ |++..++..++.+....++ ++++++++..++. .+|. +..+|+..+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~-~~PK-ny~aW~hR~w 116 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR-VNPK-SYGTWHHRCW 116 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HCTT-CHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH-hCCC-CHHHHHHHHH
Confidence 344444 7999999999999 9999999999999998877 7999999999999 7994 6889999999
Q ss_pred HHHHcCC--HHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhcCCCHH
Q 003047 402 IYYQLAK--YHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK-PVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 402 iy~~~g~--~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk-~eeAl~~y~kAL~l~P~~~~ 478 (854)
++..+++ +++++.++.++|.. .+.+..+|++.+.++...|+ ++++++++.+++.++|.|..
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~----------------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S 180 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEA----------------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 180 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH
T ss_pred HHhccCcccHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH
Confidence 9999995 89999999999998 45678999999999999999 59999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHH
Q 003047 479 LWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQ 558 (854)
Q Consensus 479 aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~ 558 (854)
+|.+++.+....+... . . + +. ...+...++.+..
T Consensus 181 AW~~R~~ll~~l~~~~---~---------------------------------~-~-~~--------~~~~~~~~~eEle 214 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQP---D---------------------------------S-G-PQ--------GRLPENVLLKELE 214 (331)
T ss_dssp HHHHHHHHHHHHSCCC----------------------------------------------------CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcc---c---------------------------------c-c-cc--------cccchHHHHHHHH
Confidence 9999998877432210 0 0 0 00 0111124789999
Q ss_pred HHHHHHhhcCCCcccc
Q 003047 559 CLLNALHLLNYPDLNY 574 (854)
Q Consensus 559 ~l~nAL~L~p~~~~~~ 574 (854)
++.+|+.+.|++..+|
T Consensus 215 ~~~~ai~~~P~d~SaW 230 (331)
T 3dss_A 215 LVQNAFFTDPNDQSAW 230 (331)
T ss_dssp HHHHHHHHSTTCHHHH
T ss_pred HHHHHHHhCCCCHHHH
Confidence 9999999999976543
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.35 E-value=2.5e-11 Score=129.66 Aligned_cols=153 Identities=12% Similarity=0.096 Sum_probs=125.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS------LALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSM 394 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~------~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~ 394 (854)
+.++..++..|++++|++.++++++.. |... ..++.+|.++...|++++|+++|++++.. .++.....
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccc--cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 456788999999999999999999998 7664 34577899999999999999999999973 12212256
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcC
Q 003047 395 FNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFY 474 (854)
Q Consensus 395 ~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P 474 (854)
+++++|.+|..+|++++|+.+|++|+.+....... ......+++|+|.+|..+|+|++|+.+|++++.+.+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~---------~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDN---------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc---------ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999764322100 001236899999999999999999999999999975
Q ss_pred CC------HHHHHHHHHHHH
Q 003047 475 KQ------PLLWLRLAECCL 488 (854)
Q Consensus 475 ~~------~~aw~~La~~~i 488 (854)
+. +.+|+++|.|+.
T Consensus 228 ~~~~~~~~~~~~~~lg~~y~ 247 (293)
T 2qfc_A 228 RINSMALIGQLYYQRGECLR 247 (293)
T ss_dssp HTTBCSSHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHH
Confidence 42 778999999988
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.34 E-value=2.4e-11 Score=116.13 Aligned_cols=131 Identities=7% Similarity=-0.116 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+..+.+|...|++++|++.+++++... |++..+++.+|.++...|++++|+++|++++. .+|. .+.+++++|.+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~~~~-~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIE-LDKK-YIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcc-cHHHHHHHHHH
Confidence 45567888889999999999999999999 99999999999999999999999999999999 6784 57889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHH--HHHHHHHHHCCCcHHHHHHHHHHHHhc
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLIT--YNCGLQYLACGKPVLAARCFQKSSLVF 473 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~--~nLG~~ll~~Gk~eeAl~~y~kAL~l~ 473 (854)
|..+|++++|+.+|++++... +....++ +.++..+...|++++|+.++.++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~----------------p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK----------------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS----------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 999999999999999999982 2334455 445555888899999999888866544
No 129
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.34 E-value=6.4e-11 Score=107.61 Aligned_cols=113 Identities=22% Similarity=0.242 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTF 437 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~ 437 (854)
.+++.+|..+...|++++|+++|++++. ..|. ...+++.+|.+|...|++++|+.+|++++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------- 64 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALE-LDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------------- 64 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHH-cCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---------------
Confidence 4678999999999999999999999998 6774 5788999999999999999999999999997
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+....+++++|.++...|++++|+.+|++++.+.|+++.+|..+|.++.
T Consensus 65 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 114 (136)
T 2fo7_A 65 -DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 114 (136)
T ss_dssp -CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 23456789999999999999999999999999999999999999998887
No 130
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.34 E-value=1.4e-11 Score=144.29 Aligned_cols=142 Identities=11% Similarity=-0.040 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
.....+.+|..+|++++|++.++++++++ |++..+++.+|.+|...|++++|+++|++++. .+|. .+.+++++|.+
T Consensus 25 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~la~~ 100 (568)
T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAVLLQQASD-AAPE-HPGIALWLGHA 100 (568)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCC-CHHHHHHHHHH
Confidence 44556888899999999999999999999 99999999999999999999999999999999 7884 68899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHhcCCCHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC---GKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~---Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
|..+|++++|+.+|+++++. .+....+++++|.++... |++++|+++|+++++.+|++...
T Consensus 101 ~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 164 (568)
T 2vsy_A 101 LEDAGQAEAAAAAYTRAHQL----------------LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEP 164 (568)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCH
T ss_pred HHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccCh
Confidence 99999999999999999998 345678999999999999 99999999999999999987655
Q ss_pred HHHHH
Q 003047 480 WLRLA 484 (854)
Q Consensus 480 w~~La 484 (854)
|..++
T Consensus 165 ~~~l~ 169 (568)
T 2vsy_A 165 FAFLS 169 (568)
T ss_dssp HHHTT
T ss_pred HHHhC
Confidence 54333
No 131
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.34 E-value=7.2e-13 Score=151.94 Aligned_cols=141 Identities=16% Similarity=0.059 Sum_probs=122.3
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCcc--------------HHHHHHH
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGIS--------------SMFNNNL 399 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~--------------a~~~nnL 399 (854)
.+++++|++.++.++... |++..++..+|+.++..|+|++|+.+|++++. ..|... ..+|+|+
T Consensus 247 l~~~~~A~~~~~~~~~~~--~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~-~~p~~~~~~~~~~~~~~~~~~~~~~nl 323 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEK--LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS-WLEMEYGLSEKESKASESFLLAAFLNL 323 (457)
T ss_dssp EEEEECCCCGGGSCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HhcccccCChHHHHHHHHHHHHHHHHH
Confidence 456667777777888888 99999999999999999999999999999999 667432 6889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 400 GCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 400 G~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
|.+|.++|+|++|+.+|++||.+ .+....+|+++|.+|+.+|++++|+.+|+++++++|+++.+
T Consensus 324 a~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a 387 (457)
T 1kt0_A 324 AMCYLKLREYTKAVECCDKALGL----------------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 387 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhc----------------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999998 34568899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 003047 480 WLRLAECCLMALEK 493 (854)
Q Consensus 480 w~~La~~~i~~~~~ 493 (854)
|..|+.++....+.
T Consensus 388 ~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 388 RLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999865543
No 132
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.33 E-value=2.2e-11 Score=122.20 Aligned_cols=110 Identities=15% Similarity=0.265 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTF 437 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~ 437 (854)
..++.+|..++..|++++|+++|++++. | .+.+++++|.+|..+|++++|+.+|++++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~---~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------- 66 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQD---P--HSRICFNIGCMYTILKNMTEAEKAFTRSINR--------------- 66 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSS---C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcC---C--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------
Confidence 4578899999999999999999999964 4 3678999999999999999999999999998
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHH
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP----------------LLWLRLAECCL 488 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~----------------~aw~~La~~~i 488 (854)
.+....+++++|.+|...|++++|+.+|++++.+.|++. .+|+++|.++.
T Consensus 67 -~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 132 (213)
T 1hh8_A 67 -DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYA 132 (213)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHH
T ss_pred -CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHH
Confidence 345678999999999999999999999999999888877 99999999988
No 133
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.33 E-value=1.8e-11 Score=111.47 Aligned_cols=126 Identities=15% Similarity=0.136 Sum_probs=107.1
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccc
Q 003047 355 DSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKL 434 (854)
Q Consensus 355 ~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~ 434 (854)
+.+..++.+|.+++..|++++|+.+|++++. .+|. .+.+++++|.+|..+|++++|+.+|++++...+.....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----- 74 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKE-LDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED----- 74 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC-----
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh-----
Confidence 4567889999999999999999999999999 6784 57899999999999999999999999999984421100
Q ss_pred ccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 003047 435 LTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALE 492 (854)
Q Consensus 435 ~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~ 492 (854)
......+++++|.++...|++++|+.+|++++.+.| ++.++..++.+.....+
T Consensus 75 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 75 ----YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 001167899999999999999999999999999999 69999999988775443
No 134
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.33 E-value=6.7e-12 Score=123.16 Aligned_cols=119 Identities=11% Similarity=-0.021 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCc------c-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGI------S-----SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASL 426 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~------~-----a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l 426 (854)
..++.+|+.++..|+|++|++.|++++. .+|.. . +.+|+|+|.++.++|+|++|+.+|++||.++..-
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~-l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME-ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4678899999999999999999999999 66641 2 3389999999999999999999999999982110
Q ss_pred ccCCccccccccCCccHHHH----HHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 427 RKDKPLKLLTFSQDKSLLIT----YNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 427 ~~~~~l~~~~~~~~~~~~~~----~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
.. ..|.+..+| |++|.+|..+|++++|+.+|++++++.|++..++-.+..+
T Consensus 91 ~e---------~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 91 GE---------LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp CC---------TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred cc---------CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 00 013467888 9999999999999999999999999999987766555544
No 135
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.31 E-value=1.1e-10 Score=119.18 Aligned_cols=126 Identities=14% Similarity=0.073 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHhhhccCCC-ccHHHHHHHHHHHHH----c
Q 003047 336 NLKHAKREVKLAMNIARGKDSSLALFLKSQLEYA----RRNHRKAIKLLLALSNRTEMG-ISSMFNNNLGCIYYQ----L 406 (854)
Q Consensus 336 ~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~----~g~~~kAl~~l~kal~~~dp~-~~a~~~nnLG~iy~~----~ 406 (854)
++++|++.+++++ . +.++.+++.+|.+|.. .+++++|+++|+++.. ..|. ..+.++++||.+|.. .
T Consensus 68 ~~~~A~~~~~~A~--~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~~~~~~~~a~~~Lg~~y~~g~g~~ 142 (212)
T 3rjv_A 68 DYPQARQLAEKAV--E--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-DSESDAAVDAQMLLGLIYASGVHGP 142 (212)
T ss_dssp CHHHHHHHHHHHH--H--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-STTSHHHHHHHHHHHHHHHHTSSSS
T ss_pred CHHHHHHHHHHHH--H--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHcCCCCC
Confidence 6777888888884 4 6689999999999998 8999999999999998 4441 136789999999999 8
Q ss_pred CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHC-C-----CcHHHHHHHHHHHHhcCCCHHHH
Q 003047 407 AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC-G-----KPVLAARCFQKSSLVFYKQPLLW 480 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~-G-----k~eeAl~~y~kAL~l~P~~~~aw 480 (854)
+++++|+.+|++|+.. +....+++++|.+|... | ++++|+.+|+++++.. ++.+.
T Consensus 143 ~d~~~A~~~~~~A~~~-----------------~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~ 203 (212)
T 3rjv_A 143 EDDVKASEYFKGSSSL-----------------SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGC 203 (212)
T ss_dssp CCHHHHHHHHHHHHHT-----------------SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHH
T ss_pred CCHHHHHHHHHHHHHc-----------------CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHH
Confidence 9999999999999986 22456899999999875 3 7999999999999884 45555
Q ss_pred HHHHH
Q 003047 481 LRLAE 485 (854)
Q Consensus 481 ~~La~ 485 (854)
..|+.
T Consensus 204 ~~l~~ 208 (212)
T 3rjv_A 204 EEFDR 208 (212)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.31 E-value=7.2e-12 Score=120.92 Aligned_cols=94 Identities=16% Similarity=0.100 Sum_probs=86.0
Q ss_pred HHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHC
Q 003047 377 IKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC 456 (854)
Q Consensus 377 l~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~ 456 (854)
-..|++++. .+| ....+++++|.++...|++++|+.+|++++.. .|.++.+|+++|.++...
T Consensus 7 ~~~~~~al~-~~p-~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~ 68 (148)
T 2vgx_A 7 GGTIAMLNE-ISS-DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL----------------DHYDSRFFLGLGACRQAM 68 (148)
T ss_dssp CCSHHHHTT-CCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHT
T ss_pred hhhHHHHHc-CCH-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----------------CcccHHHHHHHHHHHHHH
Confidence 356778888 678 46788999999999999999999999999998 355788999999999999
Q ss_pred CCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 457 GKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 457 Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
|++++|+.+|++++.++|+++.+|+++|.|+.
T Consensus 69 g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 69 GQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999988
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.30 E-value=5.8e-11 Score=113.44 Aligned_cols=114 Identities=16% Similarity=0.120 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccccc
Q 003047 357 SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLT 436 (854)
Q Consensus 357 ~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~ 436 (854)
+..++.+|..++..|++++|+++|++++. .+|. ...+++++|.+|..+|++++|+.+|++++..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-------------- 76 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIE-LNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIEL-------------- 76 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------
Confidence 36788999999999999999999999999 6884 5889999999999999999999999999998
Q ss_pred ccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 437 FSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 437 ~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+....+++++|.++...|++++|+.+|++++.++|+++.+|..++.+..
T Consensus 77 --~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 126 (166)
T 1a17_A 77 --DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 126 (166)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred --CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34467899999999999999999999999999999999999977776644
No 138
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.30 E-value=9e-12 Score=115.99 Aligned_cols=100 Identities=12% Similarity=-0.058 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccC
Q 003047 360 LFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQ 439 (854)
Q Consensus 360 ~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~ 439 (854)
++.+|..++..|++++|+..|++++. .+|. .+.+|+++|.+|..+|++++|+.+|++++.+ .
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~-~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----------------~ 81 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ-KEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML----------------D 81 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------C
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------C
Confidence 34455555555555555555555555 4552 3455555555555555555555555555555 2
Q ss_pred CccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH
Q 003047 440 DKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 440 ~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
|....+++++|.+|...|++++|+.+|++++.++|+++
T Consensus 82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 23345555555555555555555555555555555543
No 139
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.29 E-value=3e-12 Score=144.86 Aligned_cols=271 Identities=11% Similarity=0.017 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
++...++.++..+++++|++.+.+ .+++..+..++..+...|++++|+++++.+.+ ..+ .+.+...|+.+
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark-~~~--~~~i~~~Li~~ 103 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARK-KAR--ESYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCc--cchhHHHHHHH
Confidence 333456666667777777766643 23444666666677777777777777776666 333 13456667777
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
|.++|++.+++.+|+. +...+|+++|..+...|+|++|..+|.++ ..|.+
T Consensus 104 Y~Klg~l~e~e~f~~~----------------------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~ 153 (449)
T 1b89_A 104 LAKTNRLAELEEFING----------------------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGR 153 (449)
T ss_dssp -----CHHHHTTTTTC----------------------C----------------CTTTHHHHHHHT--------TCHHH
T ss_pred HHHhCCHHHHHHHHcC----------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHH
Confidence 7777777766655531 23358999999999999999999999987 46999
Q ss_pred HHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 003047 483 LAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLN 562 (854)
Q Consensus 483 La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~n 562 (854)
||.|++ +.+ .++.|..|+++
T Consensus 154 LA~~L~---~Lg---------------------------------------------------------~yq~AVea~~K 173 (449)
T 1b89_A 154 LASTLV---HLG---------------------------------------------------------EYQAAVDGARK 173 (449)
T ss_dssp HHHHHH---TTT---------------------------------------------------------CHHHHHHHHHH
T ss_pred HHHHHH---Hhc---------------------------------------------------------cHHHHHHHHHH
Confidence 999988 320 24679999999
Q ss_pred HHhhcCCCcccccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccc
Q 003047 563 ALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSY 642 (854)
Q Consensus 563 AL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~ 642 (854)
| ..+..
T Consensus 174 A-----~~~~~--------------------------------------------------------------------- 179 (449)
T 1b89_A 174 A-----NSTRT--------------------------------------------------------------------- 179 (449)
T ss_dssp H-----TCHHH---------------------------------------------------------------------
T ss_pred c-----CCchh---------------------------------------------------------------------
Confidence 8 11211
Q ss_pred hhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhc
Q 003047 643 YEDVCRRENQMIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLS 722 (854)
Q Consensus 643 ~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~ 722 (854)
|-....++...|++..|..+...+...|+ ...-+..+| ...|+++||+.+|+.++
T Consensus 180 ----------------Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad---~l~~lv~~Y-----ek~G~~eEai~lLe~aL- 234 (449)
T 1b89_A 180 ----------------WKEVCFACVDGKEFRLAQMCGLHIVVHAD---ELEELINYY-----QDRGYFEELITMLEAAL- 234 (449)
T ss_dssp ----------------HHHHHHHHHHTTCHHHHHHTTTTTTTCHH---HHHHHHHHH-----HHTTCHHHHHHHHHHHT-
T ss_pred ----------------HHHHHHHHHHcCcHHHHHHHHHHHHhCHh---hHHHHHHHH-----HHCCCHHHHHHHHHHHh-
Confidence 22335678899999999888887554443 333455555 47899999999999999
Q ss_pred CCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHc--CCHHHHHHH
Q 003047 723 GGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQ--GEFERAHHF 800 (854)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~--g~~e~A~~~ 800 (854)
.++ + +...++..||..|++- +++.++++.
T Consensus 235 -~le--------------------------------------~----------ah~~~ftel~il~~ky~p~k~~ehl~~ 265 (449)
T 1b89_A 235 -GLE--------------------------------------R----------AHMGMFTELAILYSKFKPQKMREHLEL 265 (449)
T ss_dssp -TST--------------------------------------T----------CCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -CCc--------------------------------------H----------HHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 332 1 1577888899998887 888889988
Q ss_pred HHHHHhhCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 003047 801 VTQALSILP-----RSTEATLTAIYVDLMLGKSQEALAKLKYCNHV 841 (854)
Q Consensus 801 ~~~Al~~~P-----~~~~a~~l~~y~~L~~G~~~eA~~~lk~~~~~ 841 (854)
|...+.+.| ..+..+.-++|++..-|+++.|..++-.|...
T Consensus 266 ~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~ 311 (449)
T 1b89_A 266 FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 311 (449)
T ss_dssp HSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTT
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChh
Confidence 888877766 66778889999999999999999988776543
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.29 E-value=1.7e-11 Score=130.93 Aligned_cols=106 Identities=13% Similarity=0.028 Sum_probs=96.9
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|+++.+++.+|..++..|+|++|+++|++++. .+|. .+.+++++|.+|..+|++++|+.+|++++.+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------- 67 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAIT-RNPL-VAVYYTNRALCYLKMQQPEQALADCRRALEL----------- 67 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------
Confidence 67889999999999999999999999999999 7884 6889999999999999999999999999998
Q ss_pred cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCH
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
.+....+++++|.+|..+|++++|+.+|++++.++|+++
T Consensus 68 -----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 106 (281)
T 2c2l_A 68 -----DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (281)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 345678999999999999999999999999999999764
No 141
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.29 E-value=1.6e-10 Score=127.56 Aligned_cols=152 Identities=7% Similarity=-0.033 Sum_probs=134.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHhhhccCCCccHH
Q 003047 316 TVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARR-NHRKAIKLLLALSNRTEMGISSM 394 (854)
Q Consensus 316 ~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g-~~~kAl~~l~kal~~~dp~~~a~ 394 (854)
..+|+....++++. .......++|++.+.+++.++ |++..++..++.+....| .++++++++++++. .+|. +..
T Consensus 50 ~~~y~~~~~~~r~~-~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~-~nPK-ny~ 124 (349)
T 3q7a_A 50 SEEYKDAMDYFRAI-AAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV-QNLK-SYQ 124 (349)
T ss_dssp CHHHHHHHHHHHHH-HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-TTCC-CHH
T ss_pred CHHHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-hCCC-cHH
Confidence 46777766666443 333345578999999999999 999999999999999999 59999999999999 7994 688
Q ss_pred HHHHHHHHHHHc-C-CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcH--------HHHH
Q 003047 395 FNNNLGCIYYQL-A-KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPV--------LAAR 464 (854)
Q Consensus 395 ~~nnLG~iy~~~-g-~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~e--------eAl~ 464 (854)
+|+..+.++..+ + ++++++.++.++|.. .+.+..+|++.+.++...|+++ ++++
T Consensus 125 aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~----------------dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe 188 (349)
T 3q7a_A 125 VWHHRLLLLDRISPQDPVSEIEYIHGSLLP----------------DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELD 188 (349)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHTSS----------------CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhccccccchhhHHHHHH
Confidence 999999999998 8 999999999999997 4567899999999999999988 9999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 465 CFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 465 ~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
++.++++++|.|..+|.+++.+..
T Consensus 189 ~~~k~I~~dp~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 189 WCNEMLRVDGRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999999997755
No 142
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.29 E-value=1.2e-11 Score=138.18 Aligned_cols=232 Identities=11% Similarity=0.069 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHhhhcccCCC
Q 003047 28 ATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEELARATGEQTEG 107 (854)
Q Consensus 28 ~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 107 (854)
.+.+.+|...+..|+|++|++.|+++++..|.........++.+.
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~----------------------------------- 49 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDK----------------------------------- 49 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSH-----------------------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHH-----------------------------------
Confidence 356788999999999999999999999988876543322221100
Q ss_pred CCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhh-HHH
Q 003047 108 GGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETT-ALQ 186 (854)
Q Consensus 108 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~-~~~ 186 (854)
. ..+...+++++|.+|+.+|+|++|+++|++++...+.+.+.. ...
T Consensus 50 -------------------------------~--~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 96 (434)
T 4b4t_Q 50 -------------------------------R--RNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKV 96 (434)
T ss_dssp -------------------------------H--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHH
T ss_pred -------------------------------H--hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 0 111233678999999999999999999999999888877654 333
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhh
Q 003047 187 ICLLLLDVALACHDAFRSADVLIYLEKAFSVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENA 266 (854)
Q Consensus 187 ~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (854)
+..+++.++...|++++|+. ++++++.+.......
T Consensus 97 ~~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~------------------------------------------ 131 (434)
T 4b4t_Q 97 LKTLIEKFEQVPDSLDDQIF---VCEKSIEFAKREKRV------------------------------------------ 131 (434)
T ss_dssp HHHHHHHHCSCCSCHHHHHH---HHHHHHHHHHHSSCC------------------------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHH---HHHHHHHHHHHhCcc------------------------------------------
Confidence 55557788999999999984 567666553111000
Q ss_pred hhhhhhhhhhhhhhhhhhhhhccccCCCCCCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 003047 267 LSRTLSEETLEDDTVLALSSLEISGQNLTRPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKL 346 (854)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~ 346 (854)
.....+....+.+|...|++++|...++.
T Consensus 132 ---------------------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 132 ---------------------------------------------------FLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp ---------------------------------------------------SSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 00123445568889999999999999999
Q ss_pred HHHhcCC----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCC-CccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003047 347 AMNIARG----KDSSLALFLKSQLEYARRNHRKAIKLLLALSNR----TEM-GISSMFNNNLGCIYYQLAKYHTSSVFLS 417 (854)
Q Consensus 347 al~~~~~----P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp-~~~a~~~nnLG~iy~~~g~~~eAi~~f~ 417 (854)
++....+ |....+++.+|.+|...|++++|..+|++++.. .+| .....++..+|.+|...|+|.+|..+|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 161 LLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFF 240 (434)
T ss_dssp HHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9887522 444778999999999999999999999999873 222 1235678889999999999999999999
Q ss_pred HHHHhc
Q 003047 418 KALSNS 423 (854)
Q Consensus 418 kAL~~~ 423 (854)
+++...
T Consensus 241 ~a~~~~ 246 (434)
T 4b4t_Q 241 ESFESY 246 (434)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999974
No 143
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.27 E-value=4.7e-11 Score=109.87 Aligned_cols=117 Identities=14% Similarity=0.043 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCcc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccc
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGIS--SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLL 435 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~--a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~ 435 (854)
.+++.+|..++..|++++|++.|++++. ..|... +.+++++|.+|..+|++++|+.+|++++...++.
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~--------- 72 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLE-LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH--------- 72 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHH-HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS---------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH-HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC---------
Confidence 3578899999999999999999999999 677432 2688899999999999999999999999983210
Q ss_pred cccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 436 TFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 436 ~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+....+++++|.++...|++++|+.+|++++..+|+++.++..+..+..
T Consensus 73 ----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 73 ----DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp ----TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred ----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence 1126889999999999999999999999999999999988776665443
No 144
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.26 E-value=1.4e-11 Score=109.29 Aligned_cols=106 Identities=15% Similarity=0.121 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|+++.+++.+|.+++..|++++|+.+|++++. .+|. ...++.++|.+|..+|++++|+.+|++++..
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----------- 69 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQ-LDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINV----------- 69 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHH-HCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----------
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------
Confidence 88999999999999999999999999999999 6784 5788999999999999999999999999998
Q ss_pred cccccCCc--cHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhcCCCH
Q 003047 434 LLTFSQDK--SLLITYNCGLQYLAC-GKPVLAARCFQKSSLVFYKQP 477 (854)
Q Consensus 434 ~~~~~~~~--~~~~~~nLG~~ll~~-Gk~eeAl~~y~kAL~l~P~~~ 477 (854)
.+. ...+++++|.++... |++++|+++|++++...|+++
T Consensus 70 -----~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 70 -----IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp -----SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred -----CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 234 578999999999999 999999999999999999864
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.25 E-value=2.1e-10 Score=104.15 Aligned_cols=119 Identities=12% Similarity=-0.013 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHH
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGC 401 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~ 401 (854)
...+..+.++...|++++|++.+++++... |+++.+++.+|.++...|++++|+++|++++. .+|. .+.++.++|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~~~~ 88 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAIC-IDPA-YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh-cCcc-CHHHHHHHHH
Confidence 355667899999999999999999999999 99999999999999999999999999999999 6884 5788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcH
Q 003047 402 IYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPV 460 (854)
Q Consensus 402 iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~e 460 (854)
+|..+|++++|+.+|++++.. .+....+++++|.++...|+++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~----------------~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL----------------DPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhc----------------CccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998 3445788999999999998863
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.24 E-value=6.8e-11 Score=129.80 Aligned_cols=132 Identities=6% Similarity=-0.062 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS---------------SLALFLKSQLEYARRNHRKAIKLLLALSNR 386 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~---------------~~a~~lla~ly~~~g~~~kAl~~l~kal~~ 386 (854)
.....++.+|..+|++++|++.+++++.+. |++ ..+++.+|.+|+..|++++|+++|++++.
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 355667899999999999999999999999 999 69999999999999999999999999999
Q ss_pred cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHH-HH
Q 003047 387 TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAA-RC 465 (854)
Q Consensus 387 ~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl-~~ 465 (854)
.+|. ++.+++++|.+|..+|++++|+.+|++++.+ .|....+++++|.++..+|++++|. ..
T Consensus 225 ~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----------------~P~~~~a~~~l~~~~~~~~~~~~a~~~~ 287 (336)
T 1p5q_A 225 LDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL----------------YPNNKAAKTQLAVCQQRIRRQLAREKKL 287 (336)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7884 6889999999999999999999999999998 3456789999999999999999994 67
Q ss_pred HHHHHHhc
Q 003047 466 FQKSSLVF 473 (854)
Q Consensus 466 y~kAL~l~ 473 (854)
|.+++...
T Consensus 288 ~~~~~~~~ 295 (336)
T 1p5q_A 288 YANMFERL 295 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766543
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.24 E-value=1.8e-10 Score=123.53 Aligned_cols=215 Identities=13% Similarity=-0.024 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHH-------HHHHHHHHhccccCCCCCCCCCcccceeeccc
Q 003047 443 LLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRL-------AECCLMALEKGLVAPGRSLSDGSEVKVHVIGK 515 (854)
Q Consensus 443 ~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~L-------a~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~ 515 (854)
..-+|..|.-+ ..+++.+|.++|.+++.++|+.+++|+.+ +.++..+++.
T Consensus 7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~---------------------- 63 (282)
T 4f3v_A 7 LASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYS---------------------- 63 (282)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHT----------------------
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHH----------------------
Confidence 45567778876 68999999999999999999999999999 4554433331
Q ss_pred cccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccc-cCCCCCCccccccccccc
Q 003047 516 GKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSK-FGLPSNSSVEESESSEGA 594 (854)
Q Consensus 516 g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~-~~~~~~~~~~~~~~~~~~ 594 (854)
..+..+++.++.+.|.....+.. .++
T Consensus 64 --------------------------------------~~a~~~~~~~l~l~p~~l~a~~~~~g~--------------- 90 (282)
T 4f3v_A 64 --------------------------------------RRNFGQLSGSVQISMSTLNARIAIGGL--------------- 90 (282)
T ss_dssp --------------------------------------GGGTTHHHHTTTCCGGGGCCEEECCTT---------------
T ss_pred --------------------------------------HHHHHHHHHHhcCChhhhhhhhccCCc---------------
Confidence 22566788888888886542210 000
Q ss_pred ccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCCHHH
Q 003047 595 SSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMENPVK 674 (854)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~~~~ 674 (854)
-||..... ..+..+...+|.++...|+|.+
T Consensus 91 --------------------------y~~~~~~v------------------------~~r~dl~LayA~~L~~~g~y~e 120 (282)
T 4f3v_A 91 --------------------------YGDITYPV------------------------TSPLAITMGFAACEAAQGNYAD 120 (282)
T ss_dssp --------------------------TCCCEEEC------------------------SSHHHHHHHHHHHHHHHTCHHH
T ss_pred --------------------------cccccccc------------------------CCHhHHHHHHHHHHHHCCCHHH
Confidence 01101100 0011334466788999999999
Q ss_pred HHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCC
Q 003047 675 ALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGG 753 (854)
Q Consensus 675 Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 753 (854)
|.+.+..++. .|... .+..+|.+ +..++|+++|+.+|++... .
T Consensus 121 A~~~l~~~~~~~p~~~-~~~~~a~l-----~~~~~r~~dA~~~l~~a~~--~---------------------------- 164 (282)
T 4f3v_A 121 AMEALEAAPVAGSEHL-VAWMKAVV-----YGAAERWTDVIDQVKSAGK--W---------------------------- 164 (282)
T ss_dssp HHHHHTSSCCTTCHHH-HHHHHHHH-----HHHTTCHHHHHHHHTTGGG--C----------------------------
T ss_pred HHHHHHHHHhcCCchH-HHHHHHHH-----HHHcCCHHHHHHHHHHhhc--c----------------------------
Confidence 9999999886 55555 77777764 4478999999999987772 1
Q ss_pred CCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHhcCCHHH
Q 003047 754 PAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSIL--PR-STEATLTAIYVDLMLGKSQE 830 (854)
Q Consensus 754 ~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~--P~-~~~a~~l~~y~~L~~G~~~e 830 (854)
|. | .-...++++||.++..+|++++|+.+|++++.-. |. .+.+++.++.++.++|+.++
T Consensus 165 -----------~d---~----~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~de 226 (282)
T 4f3v_A 165 -----------PD---K----FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESA 226 (282)
T ss_dssp -----------SC---H----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHH
T ss_pred -----------CC---c----ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHH
Confidence 10 0 0125678999999999999999999999998654 55 56789999999999999999
Q ss_pred HHHHHHh
Q 003047 831 ALAKLKY 837 (854)
Q Consensus 831 A~~~lk~ 837 (854)
|..++++
T Consensus 227 A~~~l~~ 233 (282)
T 4f3v_A 227 AVALLEW 233 (282)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999988
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.23 E-value=2.2e-10 Score=105.77 Aligned_cols=118 Identities=8% Similarity=-0.078 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHH
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIY 403 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy 403 (854)
.+.++..+...|++++|++.+++++.++ |+++.+++.+|.+++..|++++|++.|++++. .+|. .+.+++++|.+|
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIE-KDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCC-cHHHHHHHHHHH
Confidence 4457888999999999999999999999 99999999999999999999999999999999 7885 688999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHH
Q 003047 404 YQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLA 455 (854)
Q Consensus 404 ~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~ 455 (854)
..+|++++|+.+|++++.+.++... .+.+..++..++.+...
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~----------~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNN----------GSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHT----------TTTHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCC----------chhHHHHHHHHHHHHHh
Confidence 9999999999999999999543221 13345677667766544
No 149
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.22 E-value=2.1e-09 Score=117.95 Aligned_cols=103 Identities=9% Similarity=-0.106 Sum_probs=91.5
Q ss_pred HHhcCHH-HHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhchhcccCCcccccc
Q 003047 368 YARRNHR-KAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK----------YHTSSVFLSKALSNSASLRKDKPLKLLT 436 (854)
Q Consensus 368 ~~~g~~~-kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~----------~~eAi~~f~kAL~~~~~l~~~~~l~~~~ 436 (854)
...|+++ +|++++.+++. .+|. +..+|+..+.+...+++ +++++.++.++|..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~-~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~-------------- 103 (331)
T 3dss_A 40 RQAGELDESVLELTSQILG-ANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-------------- 103 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHT-TCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------------
T ss_pred HHcCCCCHHHHHHHHHHHH-HCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------------
Confidence 3556665 89999999999 7994 68899999999998877 68899999999987
Q ss_pred ccCCccHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 437 FSQDKSLLITYNCGLQYLACGK--PVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 437 ~~~~~~~~~~~nLG~~ll~~Gk--~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.|....+|++.+.++...++ +++++.++.+++.++|.|..+|.+.+.+..
T Consensus 104 --~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~ 155 (331)
T 3dss_A 104 --NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAA 155 (331)
T ss_dssp --CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 46788999999999999995 899999999999999999999999997765
No 150
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.22 E-value=1.7e-10 Score=105.75 Aligned_cols=116 Identities=9% Similarity=-0.098 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+..+.+|...|++++|++.+++++... |++..+++.+|.++...|++++|+++|++++. .+|. .+.+++++|.+
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQ-LEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hCCC-chHHHHHHHHH
Confidence 44557888999999999999999999999 99999999999999999999999999999999 6884 67899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK 458 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk 458 (854)
|..+|++++|+.+|++++... +....+++++|.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~----------------p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD----------------SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC----------------GGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhC----------------CCchHHHHHHHHHHHHhcC
Confidence 999999999999999999982 3456788999999988774
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.21 E-value=1.9e-10 Score=111.65 Aligned_cols=97 Identities=15% Similarity=0.080 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+.++.+|...|++++|++.+++++.++ |+++.+++.+|.+|+..|++++|+++|++++. .+|. .+.+|+++|.+
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATV-VDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHH
Confidence 55667899999999999999999999999 99999999999999999999999999999999 7884 68899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhc
Q 003047 403 YYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~ 423 (854)
|..+|++++|+.+|++++.+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999983
No 152
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.20 E-value=1.5e-10 Score=108.65 Aligned_cols=143 Identities=15% Similarity=0.043 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCc
Q 003047 322 KLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS------LALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGI 391 (854)
Q Consensus 322 ~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~------~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~ 391 (854)
.+....+.+|...|++++|++.+++++.+. |+.. .++..+|.++...|++++|++++++++.. .++..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--KEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--HHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 355667888999999999999999999987 5432 47889999999999999999999999873 12212
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Q 003047 392 SSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL 471 (854)
Q Consensus 392 ~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~ 471 (854)
...++.++|.+|..+|++++|+.+|++++...+.... .+....+++++|.++...|++++|+++|++++.
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD----------RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccc----------hHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3568889999999999999999999999998543210 112357889999999999999999999999999
Q ss_pred hcCCC
Q 003047 472 VFYKQ 476 (854)
Q Consensus 472 l~P~~ 476 (854)
+....
T Consensus 158 ~~~~~ 162 (164)
T 3ro3_A 158 ISREV 162 (164)
T ss_dssp HHTTC
T ss_pred HHHHh
Confidence 87654
No 153
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.20 E-value=3.1e-11 Score=136.49 Aligned_cols=252 Identities=12% Similarity=0.042 Sum_probs=107.6
Q ss_pred HhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHH
Q 003047 333 LTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTS 412 (854)
Q Consensus 333 ~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eA 412 (854)
..|++++|.+-+++. + ++..|..+|..+...|++++|++.|.++ .+| ..|..++..+...|++++|
T Consensus 15 ~~~~ld~A~~fae~~---~----~~~vWs~La~A~l~~g~~~eAIdsfika---~D~----~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 15 HIGNLDRAYEFAERC---N----EPAVWSQLAKAQLQKGMVKEAIDSYIKA---DDP----SSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC---C----ChHHHHHHHHHHHHcCCHHHHHHHHHcC---CCH----HHHHHHHHHHHhCCCHHHH
Confidence 456677787777766 2 2358889999999999999999999764 233 3577788889999999999
Q ss_pred HHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 003047 413 SVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALE 492 (854)
Q Consensus 413 i~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~ 492 (854)
+.|++++++.. +.+.+...++.+|.++|+++++.+.|+. |+. .+|..+|.+|..
T Consensus 81 i~yl~~ark~~-----------------~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~-~a~~~IGd~~~~--- 134 (449)
T 1b89_A 81 VKYLQMARKKA-----------------RESYVETELIFALAKTNRLAELEEFING-----PNN-AHIQQVGDRCYD--- 134 (449)
T ss_dssp ---------------------------------------------CHHHHTTTTTC-----C------------------
T ss_pred HHHHHHHHHhC-----------------ccchhHHHHHHHHHHhCCHHHHHHHHcC-----CcH-HHHHHHHHHHHH---
Confidence 99999888751 1245566788899999999998888753 543 488888888772
Q ss_pred ccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcc
Q 003047 493 KGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDL 572 (854)
Q Consensus 493 ~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~ 572 (854)
.+ .++.|..+|.++ .
T Consensus 135 ~g---------------------------------------------------------~yeeA~~~Y~~a--------~ 149 (449)
T 1b89_A 135 EK---------------------------------------------------------MYDAAKLLYNNV--------S 149 (449)
T ss_dssp -----------------------------------------------------------CTTTHHHHHHHT--------T
T ss_pred cC---------------------------------------------------------CHHHHHHHHHHh--------h
Confidence 10 124488888865 1
Q ss_pred cccccCCCCCCcccccccccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhH
Q 003047 573 NYSKFGLPSNSSVEESESSEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQ 652 (854)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 652 (854)
.
T Consensus 150 n------------------------------------------------------------------------------- 150 (449)
T 1b89_A 150 N------------------------------------------------------------------------------- 150 (449)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred h-------------------------------------------------------------------------------
Confidence 1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCC
Q 003047 653 MIKQALLANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFS 732 (854)
Q Consensus 653 ~l~~~~l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~ 732 (854)
+.+||.++..+|++.+|+++++++ ..+..++.+.. +|+..|+++.|..|..... .
T Consensus 151 ------~~~LA~~L~~Lg~yq~AVea~~KA----~~~~~Wk~v~~-----aCv~~~ef~lA~~~~l~L~---~------- 205 (449)
T 1b89_A 151 ------FGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCF-----ACVDGKEFRLAQMCGLHIV---V------- 205 (449)
T ss_dssp ------HHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHH-----HHHHTTCHHHHHHTTTTTT---T-------
T ss_pred ------HHHHHHHHHHhccHHHHHHHHHHc----CCchhHHHHHH-----HHHHcCcHHHHHHHHHHHH---h-------
Confidence 346788999999999999999999 35777766654 8999999999966655422 1
Q ss_pred chhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 003047 733 GEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRST 812 (854)
Q Consensus 733 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~ 812 (854)
.|.-.-.+...|...|++++|..+++++|.++|.+.
T Consensus 206 --------------------------------------------~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~ 241 (449)
T 1b89_A 206 --------------------------------------------HADELEELINYYQDRGYFEELITMLEAALGLERAHM 241 (449)
T ss_dssp --------------------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCH
T ss_pred --------------------------------------------CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHH
Confidence 111233577889999999999999999999998873
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHh
Q 003047 813 --EATLTAIYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 813 --~a~~l~~y~~L~~G~~~eA~~~lk~ 837 (854)
..-+...|...+-|+..+.+..+.+
T Consensus 242 ~~ftel~il~~ky~p~k~~ehl~~~~~ 268 (449)
T 1b89_A 242 GMFTELAILYSKFKPQKMREHLELFWS 268 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3445667777788888888888766
No 154
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.19 E-value=3.2e-09 Score=117.12 Aligned_cols=180 Identities=10% Similarity=-0.017 Sum_probs=148.4
Q ss_pred HHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhchhcccCCccccccccCCccHH
Q 003047 366 LEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA-KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLL 444 (854)
Q Consensus 366 ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g-~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~ 444 (854)
+....+..++|++++.+++. .+|. +..+|+..|.++..+| .+++++.++.++|.. .|+...
T Consensus 63 ~~~~~e~se~AL~lt~~~L~-~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----------------nPKny~ 124 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVR-MNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----------------NLKSYQ 124 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----------------TCCCHH
T ss_pred HHHhCCCCHHHHHHHHHHHH-hCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----------------CCCcHH
Confidence 33344777899999999999 7995 6889999999999999 599999999999998 467889
Q ss_pred HHHHHHHHHHHC-C-CcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccccCCCCCCCCCcccceeeccccccceee
Q 003047 445 ITYNCGLQYLAC-G-KPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLV 522 (854)
Q Consensus 445 ~~~nLG~~ll~~-G-k~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~ 522 (854)
+|++.+.++... + +++++++++.+++.++|+|..+|...+.+....++. +.
T Consensus 125 aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~---~~------------------------ 177 (349)
T 3q7a_A 125 VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTL---GR------------------------ 177 (349)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHT---TC------------------------
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc---cc------------------------
Confidence 999999999998 8 899999999999999999999999999887744432 00
Q ss_pred eccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccccccccccccccc
Q 003047 523 MEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESESSEGASSKNLNHK 602 (854)
Q Consensus 523 l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (854)
. ....++.+..++.+++..+|.+.
T Consensus 178 ---------~----------------~~~~~~eELe~~~k~I~~dp~N~------------------------------- 201 (349)
T 3q7a_A 178 ---------I----------------SEAQWGSELDWCNEMLRVDGRNN------------------------------- 201 (349)
T ss_dssp ---------C----------------CHHHHHHHHHHHHHHHHHCTTCH-------------------------------
T ss_pred ---------c----------------chhhHHHHHHHHHHHHHhCCCCH-------------------------------
Confidence 0 00125789999999999998854
Q ss_pred ccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHcCC-------HHHH
Q 003047 603 SLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEMEN-------PVKA 675 (854)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~lg~-------~~~A 675 (854)
+++...++++..+++ +.++
T Consensus 202 ------------------------------------------------------SAW~~R~~lL~~l~~~~~~~~~~~eE 227 (349)
T 3q7a_A 202 ------------------------------------------------------SAWGWRWYLRVSRPGAETSSRSLQDE 227 (349)
T ss_dssp ------------------------------------------------------HHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred ------------------------------------------------------HHHHHHHHHHHhccccccchHHHHHH
Confidence 235566777777776 7899
Q ss_pred HHHHHHHHc-CCCChHHHHHHHHHHH
Q 003047 676 LAAARSLLE-LPDCSRIYIFLGHIYA 700 (854)
Q Consensus 676 l~~~~~lL~-~p~~~~~~~~la~lY~ 700 (854)
++++++++. .|.+.+++.++..++.
T Consensus 228 Le~~~~aI~~~P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 228 LIYILKSIHLIPHNVSAWNYLRGFLK 253 (349)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999997 9999999988777554
No 155
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.18 E-value=9e-11 Score=114.87 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=91.2
Q ss_pred HHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHH
Q 003047 367 EYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLIT 446 (854)
Q Consensus 367 y~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~ 446 (854)
+...|++++|++.|++++. .+|. .+.+++.+|.+|..+|++++|+.+|++++.. .+....++
T Consensus 20 ~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~ 81 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIR-ANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQL----------------RGENAELY 81 (177)
T ss_dssp CC-----CCCCHHHHHHHH-HCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HCSCHHHH
T ss_pred hhhccCHHHHHHHHHHHHH-hCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCCCHHHH
Confidence 4567999999999999999 7884 6789999999999999999999999999998 24457899
Q ss_pred HHHHHH-HHHCCCc--HHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 447 YNCGLQ-YLACGKP--VLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 447 ~nLG~~-ll~~Gk~--eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+++|.+ +...|++ ++|+.+|++++.++|+++.+|+.+|.++.
T Consensus 82 ~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 126 (177)
T 2e2e_A 82 AALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAF 126 (177)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 999999 8899999 99999999999999999999999999988
No 156
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.17 E-value=1e-09 Score=122.25 Aligned_cols=222 Identities=12% Similarity=0.043 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchh------------hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhh
Q 003047 148 AKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDET------------TALQICLLLLDVALACHDAFRSADVLIYLEKAF 215 (854)
Q Consensus 148 ~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~------------~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l 215 (854)
.....|.-+...|+|.+|+++|.++++..+...+. ....++..++.+|...|++++|++ ++++++
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~---~~~~~~ 82 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLRE---FIPHST 82 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHH---HHHHTH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHH---HHHHHH
Confidence 46678999999999999999999999966654432 123456779999999999999984 667766
Q ss_pred hcccccCCCCCCcccchhhhhhccCCCCCCCcccccccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhccccCCCC
Q 003047 216 SVGCVNQVDSGSMGQQSTNLLAKYSSVPSNSSTADASNSDLAATVNASENALSRTLSEETLEDDTVLALSSLEISGQNLT 295 (854)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (854)
.+..... ... . .
T Consensus 83 ~~~~~~~--------------------------------~~~-----------------------~-----~-------- 94 (434)
T 4b4t_Q 83 EYMMQFA--------------------------------KSK-----------------------T-----V-------- 94 (434)
T ss_dssp HHHHTSC--------------------------------HHH-----------------------H-----H--------
T ss_pred HHHHHcc--------------------------------chH-----------------------H-----H--------
Confidence 5541110 000 0 0
Q ss_pred CCCCCccchhhhhhhhcccchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHhc
Q 003047 296 RPVGLSSNELSRTLVDRSISTVDLKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIAR----GKDSSLALFLKSQLEYARR 371 (854)
Q Consensus 296 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~----~P~~~~a~~lla~ly~~~g 371 (854)
..+.+++|. ++...|++++|++.++.++.... .+.-...+..+|.+|...|
T Consensus 95 ---~~~~~~l~~----------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 149 (434)
T 4b4t_Q 95 ---KVLKTLIEK----------------------FEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKK 149 (434)
T ss_dssp ---HHHHHHHHH----------------------HCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHH----------------------HHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHcc
Confidence 001122222 33345666777777777766541 1233667889999999999
Q ss_pred CHHHHHHHHHHhhhc----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHH
Q 003047 372 NHRKAIKLLLALSNR----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITY 447 (854)
Q Consensus 372 ~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~ 447 (854)
+|++|++++++++.. .+......+++++|.+|..+|++++|..+|++++.+.+.+... .......+.
T Consensus 150 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~ 220 (434)
T 4b4t_Q 150 QYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP---------TQTVAELDL 220 (434)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC---------HHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc---------hHHHHHHHH
Confidence 999999999998873 1222457789999999999999999999999999985433210 011356778
Q ss_pred HHHHHHHHCCCcHHHHHHHHHHHHhcC
Q 003047 448 NCGLQYLACGKPVLAARCFQKSSLVFY 474 (854)
Q Consensus 448 nLG~~ll~~Gk~eeAl~~y~kAL~l~P 474 (854)
++|..+...|+|++|..+|.+++...+
T Consensus 221 ~~g~~~~~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 221 MSGILHCEDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 899999999999999999999998654
No 157
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.17 E-value=5.8e-11 Score=108.92 Aligned_cols=102 Identities=8% Similarity=0.002 Sum_probs=86.1
Q ss_pred HhcCHHHHHHHHHHhhhcc---CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHH
Q 003047 369 ARRNHRKAIKLLLALSNRT---EMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLI 445 (854)
Q Consensus 369 ~~g~~~kAl~~l~kal~~~---dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~ 445 (854)
..|++++|+.+|++++. . +| ..+.+++++|.+|..+|++++|+.+|++++.. .|....+
T Consensus 2 ~~g~~~~A~~~~~~al~-~~~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~ 63 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIA-SGLQGK-DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ----------------FPNHQAL 63 (117)
T ss_dssp -----CCCHHHHHHHHS-SCCCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHH
T ss_pred CCCcHHHHHHHHHHHHH-cCCCCc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCchHH
Confidence 46899999999999999 5 57 46789999999999999999999999999998 3456789
Q ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 446 TYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 446 ~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
++++|.++...|++++|+.+|++++.+.|+++.++.....+..
T Consensus 64 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~ 106 (117)
T 3k9i_A 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF 106 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988766554433
No 158
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.15 E-value=3.2e-10 Score=121.11 Aligned_cols=159 Identities=9% Similarity=-0.086 Sum_probs=128.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHH
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIY 403 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy 403 (854)
...++.+|...|++++|++.+++++..+ |+++.+++.+|.+|...|++++|++.|++++. .+|. +..+++++|.+|
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~ 82 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALE-LDGQ-SVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-SCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHH
Confidence 3446888899999999999999999999 99999999999999999999999999999999 7884 688999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhchhcccC-Cc--------------cccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 404 YQLAKYHTSSVFLSKALSNSASLRKD-KP--------------LKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 404 ~~~g~~~eAi~~f~kAL~~~~~l~~~-~~--------------l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
..+|++++|+.+|++++.+.++.... .. ........+....+...++..+ .|++++|++.|++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~ 160 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQR 160 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSG
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 99999999999999999986542100 00 0011111223344555555544 7999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHH
Q 003047 469 SSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 469 AL~l~P~~~~aw~~La~~~i 488 (854)
+++++|++..++..++....
T Consensus 161 al~~~p~~~~~~~~l~~~~~ 180 (281)
T 2c2l_A 161 NHEGHEDDGHIRAQQACIEA 180 (281)
T ss_dssp GGTTTSCHHHHTHHHHHHHH
T ss_pred hhccccchhhhhhHHHHHHH
Confidence 99999999888888876554
No 159
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.14 E-value=8.6e-11 Score=115.09 Aligned_cols=98 Identities=12% Similarity=-0.008 Sum_probs=73.5
Q ss_pred cCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhchhcccCCccccccccCC
Q 003047 371 RNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAK----------YHTSSVFLSKALSNSASLRKDKPLKLLTFSQD 440 (854)
Q Consensus 371 g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~----------~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~ 440 (854)
+.|++|++.+++++. .+|. .+.+|+++|.++..+++ +++|+.+|++||++ .|
T Consensus 16 ~~feeA~~~~~~Ai~-l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l----------------dP 77 (158)
T 1zu2_A 16 LLFEQIRQDAENTYK-SNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI----------------DP 77 (158)
T ss_dssp HHHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH----------------CT
T ss_pred hHHHHHHHHHHHHHH-HCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh----------------Cc
Confidence 445555555555555 4452 34455555555555544 67999999999999 45
Q ss_pred ccHHHHHHHHHHHHHCC-----------CcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003047 441 KSLLITYNCGLQYLACG-----------KPVLAARCFQKSSLVFYKQPLLWLRLAEC 486 (854)
Q Consensus 441 ~~~~~~~nLG~~ll~~G-----------k~eeAl~~y~kAL~l~P~~~~aw~~La~~ 486 (854)
....+|+++|.+|..+| ++++|+.+|++|++++|++..+|..+-.+
T Consensus 78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 67899999999999985 89999999999999999999888877643
No 160
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.14 E-value=3.6e-10 Score=111.82 Aligned_cols=146 Identities=14% Similarity=0.079 Sum_probs=111.8
Q ss_pred HHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHHHHHHHcC
Q 003047 332 LLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLGCIYYQLA 407 (854)
Q Consensus 332 l~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~iy~~~g 407 (854)
+..|++++|.+.++.+.... +....++..+|.++...|++++|+.+|++++.. .++.....+++++|.+|..+|
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHP--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHTST--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 45788999988555555433 477889999999999999999999999999983 122245778999999999999
Q ss_pred CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC--H----HHHH
Q 003047 408 KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ--P----LLWL 481 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~--~----~aw~ 481 (854)
++++|+.+|++++.+....... ......+++++|.++...|++++|+.+|++++.+.+.. + .++.
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 151 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPED---------PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFR 151 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCcc---------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 9999999999999985433200 00235688999999999999999999999999876432 2 2356
Q ss_pred HHHHHHH
Q 003047 482 RLAECCL 488 (854)
Q Consensus 482 ~La~~~i 488 (854)
.+|.++.
T Consensus 152 ~la~~~~ 158 (203)
T 3gw4_A 152 GLGDLAQ 158 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6776666
No 161
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.14 E-value=1.5e-09 Score=97.59 Aligned_cols=115 Identities=16% Similarity=0.127 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+..+.+|...|++++|++.+++++... |++..+++.+|.++...|++++|+++|++++. ..|. .+.++.++|.+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hCCc-cHHHHHHHHHH
Confidence 44556888999999999999999999999 99999999999999999999999999999999 6774 57889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCC
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACG 457 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~G 457 (854)
|...|++++|+.+|++++.. .+....++.++|.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL----------------DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999998 3445678889999887654
No 162
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.14 E-value=4.4e-10 Score=125.39 Aligned_cols=118 Identities=11% Similarity=-0.003 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhc---------------cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNR---------------TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~---------------~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
..+..+|..++..|+|++|++.|++++.. .+| ....+|+++|.+|.++|++++|+.+|++||.+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQP-VALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHH-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 56777889999999999999999988861 244 35788999999999999999999999999998
Q ss_pred chhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 003047 423 SASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCLMALE 492 (854)
Q Consensus 423 ~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i~~~~ 492 (854)
.+....+++++|.+|..+|++++|+.+|+++++++|+++.+|..++.++....+
T Consensus 303 ----------------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 303 ----------------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp ----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred ----------------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999886544
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.13 E-value=4.4e-10 Score=105.27 Aligned_cols=93 Identities=6% Similarity=0.069 Sum_probs=83.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCc------cHHHHHHHH
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGI------SSMFNNNLG 400 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~------~a~~~nnLG 400 (854)
.+..|..+|++++|++.++++++++ |+++.+++.+|.+|+.+|+|++|++.|++++. .+|.. .+.+|.++|
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE-VGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH-hCcccchhhHHHHHHHHHHH
Confidence 3556667899999999999999999 99999999999999999999999999999998 34321 245789999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 003047 401 CIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 401 ~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
.+|..+|++++|+.+|+++|..
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999997
No 164
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.13 E-value=4.4e-10 Score=106.68 Aligned_cols=98 Identities=7% Similarity=-0.111 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+..+.+++..|++++|++.+++++..+ |+++.+++.+|.++...|++++|+++|++++. .+|. ++.+++++|.+
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGAL-MDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCCC-CcHHHHHHHHH
Confidence 45567889999999999999999999999 99999999999999999999999999999999 7885 57789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhch
Q 003047 403 YYQLAKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~ 424 (854)
|..+|++++|+.+|++++.+.+
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999844
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.13 E-value=2.7e-10 Score=105.92 Aligned_cols=95 Identities=12% Similarity=-0.060 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYY 404 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~ 404 (854)
+.++.+++..|++++|+..+++++.++ |+++.+++.+|.++...|++++|+.+|++++. .+|. .+.++.++|.+|.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-l~P~-~~~~~~~la~~~~ 96 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARM-LDPK-DIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHH
Confidence 446888999999999999999999999 99999999999999999999999999999999 7895 6789999999999
Q ss_pred HcCCHHHHHHHHHHHHHhc
Q 003047 405 QLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 405 ~~g~~~eAi~~f~kAL~~~ 423 (854)
.+|++++|+.+|+++++..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999974
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.12 E-value=7.4e-11 Score=136.06 Aligned_cols=129 Identities=6% Similarity=-0.149 Sum_probs=111.2
Q ss_pred HHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHH
Q 003047 332 LLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHT 411 (854)
Q Consensus 332 l~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~e 411 (854)
..+|++++|++.++++++++ |++..+++.+|.+|..+|++++|++.|++++. .+|. .+.+++++|.+|..+|++++
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIE-LDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-SCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 34799999999999999999 99999999999999999999999999999999 7884 68899999999999999999
Q ss_pred HHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHH--HHHCCCcHHHHHHHH-----------HHHHhcCCCHH
Q 003047 412 SSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQ--YLACGKPVLAARCFQ-----------KSSLVFYKQPL 478 (854)
Q Consensus 412 Ai~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~--ll~~Gk~eeAl~~y~-----------kAL~l~P~~~~ 478 (854)
|+.+|++++++. +....++++++.+ +...|++++|+++|+ +++.+.|+...
T Consensus 93 A~~~~~~al~~~----------------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~ 156 (477)
T 1wao_1 93 ALRDYETVVKVK----------------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156 (477)
T ss_dssp HHHHHHHHHHHS----------------TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred HHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence 999999999982 3345678888888 899999999999999 88888887644
Q ss_pred HH
Q 003047 479 LW 480 (854)
Q Consensus 479 aw 480 (854)
.+
T Consensus 157 ~~ 158 (477)
T 1wao_1 157 PK 158 (477)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 167
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.12 E-value=4.2e-10 Score=111.34 Aligned_cols=145 Identities=10% Similarity=0.003 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----c-CCCccH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARG----KDSSLALFLKSQLEYARRNHRKAIKLLLALSNR----T-EMGISS 393 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~----P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~-dp~~~a 393 (854)
.....+.+|..+|++++|.+.+++++.+.+. |....++..+|.++...|++++|+++|++++.. . +|....
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 4445678888999999999999999994310 556778899999999999999999999999983 1 221346
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Q 003047 394 MFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF 473 (854)
Q Consensus 394 ~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~ 473 (854)
.+++++|.+|..+|++++|+.+|++++...+.... ......++.++|.++...|++++|+.+|++++.+.
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD----------QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc----------hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999997443210 01124567899999999999999999999999988
Q ss_pred CCCH
Q 003047 474 YKQP 477 (854)
Q Consensus 474 P~~~ 477 (854)
....
T Consensus 178 ~~~~ 181 (203)
T 3gw4_A 178 AELE 181 (203)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 6543
No 168
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.11 E-value=1.7e-09 Score=127.37 Aligned_cols=174 Identities=6% Similarity=-0.057 Sum_probs=148.5
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC----------HHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH
Q 003047 336 NLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRN----------HRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ 405 (854)
Q Consensus 336 ~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~----------~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~ 405 (854)
..++|++.+.+++.++ |++..+|+.++.++...|+ +++|++++++++. .+|. +..+|++.|.++.+
T Consensus 44 ~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~-~~pK-~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR-VNPK-SYGTWHHRCWLLSR 119 (567)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHH
Confidence 4467899999999999 9999999999999999999 9999999999999 7994 68899999999999
Q ss_pred cC--CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhcCCCHHHHHH
Q 003047 406 LA--KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACG-KPVLAARCFQKSSLVFYKQPLLWLR 482 (854)
Q Consensus 406 ~g--~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~G-k~eeAl~~y~kAL~l~P~~~~aw~~ 482 (854)
++ ++++|+.++.++++. .+.+..+|++.|.++...| .++++++++.++++++|++..+|.+
T Consensus 120 l~~~~~~~el~~~~k~l~~----------------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~ 183 (567)
T 1dce_A 120 LPEPNWARELELCARFLEA----------------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 183 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred cccccHHHHHHHHHHHHhh----------------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHH
Confidence 99 669999999999998 3567899999999999999 8999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCCCCCCCCcccceeeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 003047 483 LAECCLMALEKGLVAPGRSLSDGSEVKVHVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLN 562 (854)
Q Consensus 483 La~~~i~~~~~~~~e~~~~~~~~~~~~~~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~n 562 (854)
++.++...+.. .++ + . . ..+....+++|..++++
T Consensus 184 r~~ll~~l~~~--~~~---------------~-----------------~----~--------~~~~~~~~~eel~~~~~ 217 (567)
T 1dce_A 184 RSCLLPQLHPQ--PDS---------------G-----------------P----Q--------GRLPENVLLKELELVQN 217 (567)
T ss_dssp HHHHHHHHSCC--CCS---------------S-----------------S----C--------CSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhccc--ccc---------------c-----------------c----c--------ccccHHHHHHHHHHHHH
Confidence 99988743321 000 0 0 0 00111247999999999
Q ss_pred HHhhcCCCccccc
Q 003047 563 ALHLLNYPDLNYS 575 (854)
Q Consensus 563 AL~L~p~~~~~~~ 575 (854)
|+.+.|++..+|.
T Consensus 218 ai~~~P~~~saW~ 230 (567)
T 1dce_A 218 AFFTDPNDQSAWF 230 (567)
T ss_dssp HHHHCSSCSHHHH
T ss_pred HHhhCCCCccHHH
Confidence 9999999887663
No 169
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.11 E-value=6e-10 Score=111.51 Aligned_cols=121 Identities=12% Similarity=-0.034 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH----------------HHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS----------------LALFLKSQLEYARRNHRKAIKLLLALSNR 386 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~----------------~a~~lla~ly~~~g~~~kAl~~l~kal~~ 386 (854)
....++.++...|++++|++.+++++.+. |+++ .+++.+|.+++..|++++|+++|++++.
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~- 116 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK- 116 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-
Confidence 44567889999999999999999999999 9887 8999999999999999999999999999
Q ss_pred cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHH
Q 003047 387 TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAA 463 (854)
Q Consensus 387 ~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl 463 (854)
.+|. .+.+++++|.+|..+|++++|+.+|++++.+ .+....++.+++.++...++.+++.
T Consensus 117 ~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 117 IDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL----------------NPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHHHHHHC--
T ss_pred hCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH----------------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 7884 6889999999999999999999999999998 3456788999999999988887776
No 170
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.11 E-value=2.3e-09 Score=95.52 Aligned_cols=111 Identities=9% Similarity=-0.064 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+..+.++...|++++|++.+++++... |+++.+++.+|.++...|++++|++++++++. .+|. .+.++.++|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD-LKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH-hCcc-cHHHHHHHHHH
Confidence 34456888999999999999999999999 99999999999999999999999999999999 6884 67899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHH
Q 003047 403 YYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQY 453 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~l 453 (854)
|..+|++++|+.+|++++.. .+....++..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH----------------EANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT----------------CTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHhh
Confidence 99999999999999999998 344567777777664
No 171
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.11 E-value=2.2e-10 Score=112.17 Aligned_cols=110 Identities=12% Similarity=0.072 Sum_probs=97.9
Q ss_pred hcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCH----------HHHHHHHHHhhhccCCCccHHHHHHHHHHH
Q 003047 334 TRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNH----------RKAIKLLLALSNRTEMGISSMFNNNLGCIY 403 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~----------~kAl~~l~kal~~~dp~~~a~~~nnLG~iy 403 (854)
.+.+++|++.+++++.++ |+++.+++.+|.++...+++ ++|+..|+++++ .+|. .+.+|+++|.+|
T Consensus 15 ~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~-ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL-IDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH-hCcC-cHHHHHHHHHHH
Confidence 466799999999999999 99999999999999999876 599999999999 7995 688999999999
Q ss_pred HHcC-----------CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 404 YQLA-----------KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 404 ~~~g-----------~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
..+| ++++|+.+|++||++. |.+ ..|.+++++
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~----------------P~~---------------------~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQ----------------PDN---------------------THYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC----------------TTC---------------------HHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhC----------------CCC---------------------HHHHHHHHH
Confidence 9885 8999999999999992 222 367888999
Q ss_pred cCCCHHHHHHHH
Q 003047 473 FYKQPLLWLRLA 484 (854)
Q Consensus 473 ~P~~~~aw~~La 484 (854)
.+..+.+|+.+.
T Consensus 134 ~~ka~el~~~~~ 145 (158)
T 1zu2_A 134 TAKAPQLHAEAY 145 (158)
T ss_dssp HHTHHHHHHHHH
T ss_pred HHhCHhccCccc
Confidence 999999999887
No 172
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=1.1e-08 Score=110.94 Aligned_cols=147 Identities=14% Similarity=0.017 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHHhc--CHHHHHHHHHHhhhccCCC-ccH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKD------SSLALFLKSQLEYARR--NHRKAIKLLLALSNRTEMG-ISS 393 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~------~~~a~~lla~ly~~~g--~~~kAl~~l~kal~~~dp~-~~a 393 (854)
.....+++|+.+|+.+.|.+.++++...+ |+ .+..++.-|.+.+..| ++++|+.+|+++.. ..|. ...
T Consensus 138 a~~l~vqi~L~~~r~d~A~k~l~~~~~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~-~~p~~~~~ 214 (310)
T 3mv2_B 138 LLLLAIEVALLNNNVSTASTIFDNYTNAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ-TFPTWKTQ 214 (310)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT-TSCSHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hCCCcccH
Confidence 33446899999999999999999999999 83 3444455576677777 99999999999887 5563 123
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc
Q 003047 394 MFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF 473 (854)
Q Consensus 394 ~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~ 473 (854)
..+.+ ++.++|++++|...++++++..+.+.+.+ ...+.++.++.|+..+...+|+ +|.+++.++.++.
T Consensus 215 ~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~------~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 215 LGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKE------NAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCH------HHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccc------cCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 34433 89999999999999998777644331100 0013467888899999999998 8999999999999
Q ss_pred CCCHHHHHHH
Q 003047 474 YKQPLLWLRL 483 (854)
Q Consensus 474 P~~~~aw~~L 483 (854)
|++|.+.-..
T Consensus 284 P~hp~i~d~~ 293 (310)
T 3mv2_B 284 HEHAFIKHHQ 293 (310)
T ss_dssp CCCHHHHHHH
T ss_pred CCChHHHHHH
Confidence 9999875433
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.07 E-value=9.9e-10 Score=102.01 Aligned_cols=99 Identities=12% Similarity=-0.028 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCI 402 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~i 402 (854)
..+..+.+|...|++++|+..+++++.++ |+++.+++.+|.+++..|++++|+++|++++. .+|. .+.+++++|.+
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALE-LDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCch-hHHHHHHHHHH
Confidence 44567889999999999999999999999 99999999999999999999999999999999 7884 68899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhchh
Q 003047 403 YYQLAKYHTSSVFLSKALSNSAS 425 (854)
Q Consensus 403 y~~~g~~~eAi~~f~kAL~~~~~ 425 (854)
|..+|++++|+.+|++++...+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999998553
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.05 E-value=2.2e-09 Score=100.62 Aligned_cols=122 Identities=17% Similarity=0.099 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcc
Q 003047 357 SLALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPL 432 (854)
Q Consensus 357 ~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l 432 (854)
..+++.+|.+++..|++++|+++|++++.. .++.....+++++|.+|..+|++++|+.+|++++...+....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~---- 84 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD---- 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC----
Confidence 357789999999999999999999999973 122122358889999999999999999999999998543321
Q ss_pred ccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC------HHHHHHHHHHHH
Q 003047 433 KLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ------PLLWLRLAECCL 488 (854)
Q Consensus 433 ~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~------~~aw~~La~~~i 488 (854)
.+....+++++|.++...|++++|+.+|++++.+.+.. +.++..+|.++.
T Consensus 85 ------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 85 ------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp ------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 11235688999999999999999999999999986433 456777777776
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.05 E-value=1e-10 Score=134.81 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=105.2
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccc
Q 003047 355 DSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKL 434 (854)
Q Consensus 355 ~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~ 434 (854)
+.+.+++.+|..++..|++++|+++|++++. .+|. .+.+++++|.+|.++|++++|+.+|++|+++
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------------ 69 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIE-LNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIEL------------ 69 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------
Confidence 3445667788999999999999999999999 7884 6889999999999999999999999999998
Q ss_pred ccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 435 LTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 435 ~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
.+....+++++|.+|..+|++++|+++|+++++++|+++.+|..++.+.
T Consensus 70 ----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~ 118 (477)
T 1wao_1 70 ----DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 118 (477)
T ss_dssp ----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999999999999983
No 176
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.05 E-value=1.1e-10 Score=128.22 Aligned_cols=114 Identities=11% Similarity=0.026 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003047 357 SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISS-----------------MFNNNLGCIYYQLAKYHTSSVFLSKA 419 (854)
Q Consensus 357 ~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a-----------------~~~nnLG~iy~~~g~~~eAi~~f~kA 419 (854)
...++.+|+.++..|+|++|+.+|++++. ..|. .. .+|+++|.+|.++|++++|+.+|+++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~-~~p~-~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA-YMGD-DFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH-HSCH-HHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-Hhcc-chhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35566777777777777777777777777 4553 22 37899999999999999999999999
Q ss_pred HHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 420 LSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 420 L~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
|.+ .+.+..+|+++|.+|+.+|++++|+.+|++++.++|+++.+|..|+.+..
T Consensus 257 l~~----------------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 257 LTE----------------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE 309 (338)
T ss_dssp HHH----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred HHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 998 34567899999999999999999999999999999999999999997644
No 177
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.04 E-value=1.6e-09 Score=106.20 Aligned_cols=99 Identities=11% Similarity=0.003 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCC-------CHH-----HHHHHHHHHHHhcCHHHHHHHHHHhhhcc---
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKD-------SSL-----ALFLKSQLEYARRNHRKAIKLLLALSNRT--- 387 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~-------~~~-----a~~lla~ly~~~g~~~kAl~~l~kal~~~--- 387 (854)
..+.++..+...|++++|++.+++++.+. |+ +.. +|..+|.++...|+|++|+.+|++++. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~-l~n~ 89 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH-YFNR 89 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hhhc
Confidence 34557888889999999999999999999 99 554 999999999999999999999999999 7
Q ss_pred ----CCCccHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhchh
Q 003047 388 ----EMGISSMFN----NNLGCIYYQLAKYHTSSVFLSKALSNSAS 425 (854)
Q Consensus 388 ----dp~~~a~~~----nnLG~iy~~~g~~~eAi~~f~kAL~~~~~ 425 (854)
+|+ .+.+| +++|.++..+|++++|+.+|++|+++.|+
T Consensus 90 ~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 90 RGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 894 68899 99999999999999999999999999654
No 178
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.04 E-value=1.6e-09 Score=127.63 Aligned_cols=146 Identities=8% Similarity=-0.077 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHhcC----------HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhc--CHHHHHHHHHHhhhccCCC
Q 003047 323 LQLYKVRFLLLTRN----------LKHAKREVKLAMNIARGKDSSLALFLKSQLEYARR--NHRKAIKLLLALSNRTEMG 390 (854)
Q Consensus 323 l~l~K~~lyl~~~~----------~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g--~~~kAl~~l~kal~~~dp~ 390 (854)
.+.+|..++...++ ++++++.+++++..+ |++..+|+.++.++...+ ++++|+++++++++ .+|.
T Consensus 65 aW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~-~d~~ 141 (567)
T 1dce_A 65 LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLE-ADER 141 (567)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH-HCTT
T ss_pred HHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHh-hccc
Confidence 66778888888888 999999999999999 999999999999999999 77999999999999 7995
Q ss_pred ccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHC-------------
Q 003047 391 ISSMFNNNLGCIYYQLA-KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC------------- 456 (854)
Q Consensus 391 ~~a~~~nnLG~iy~~~g-~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~------------- 456 (854)
+..+|+..|.+...+| .++++++++.++++. .+.+..+|+++|.++..+
T Consensus 142 -N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~----------------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~ 204 (567)
T 1dce_A 142 -NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR----------------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLP 204 (567)
T ss_dssp -CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT----------------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred -cccHHHHHHHHHHHcCCChHHHHHHHHHHHHH----------------CCCCccHHHHHHHHHHhhccccccccccccc
Confidence 6789999999999999 999999999999997 456789999999999985
Q ss_pred -CCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 457 -GKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 457 -Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
+++++|++++++|+.++|++..+|++++.++.
T Consensus 205 ~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~ 237 (567)
T 1dce_A 205 ENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG 237 (567)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Confidence 55799999999999999999999999998766
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.03 E-value=5.6e-09 Score=95.76 Aligned_cols=95 Identities=16% Similarity=0.030 Sum_probs=87.9
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCcc---HHHHHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS---LALFLKSQLEYARRNHRKAIKLLLALSNRTEMGIS---SMFNNN 398 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~---~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~---a~~~nn 398 (854)
+.++.+++..|++++|++.+++++... |+++ .+++.+|.+++..|++++|+++|++++. ..|. . +.++++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~-~~p~-~~~~~~~~~~ 81 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS-RYPT-HDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-STTHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HCCC-CcccHHHHHH
Confidence 346788899999999999999999999 9998 8999999999999999999999999999 6774 4 778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 399 LGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 399 LG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
+|.+|..+|++++|+.+|++++...
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999983
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.03 E-value=1.9e-09 Score=104.26 Aligned_cols=116 Identities=11% Similarity=-0.064 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh------------------cCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNI------------------ARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSN 385 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~------------------~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~ 385 (854)
...++..+...|++++|++.+++++.+ . |.+..+++.+|.+|+..|+|++|+..+++++.
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELD--RKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHH--HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHH--HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 345788889999999999999999999 7 88889999999999999999999999999999
Q ss_pred ccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccH-HHHHHHHHHHHHCCCc
Q 003047 386 RTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSL-LITYNCGLQYLACGKP 459 (854)
Q Consensus 386 ~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~-~~~~nLG~~ll~~Gk~ 459 (854)
.+|. ++.+|+++|.+|..+|++++|+.+|++++.+. |.+. .+...++.+....+++
T Consensus 92 -~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~----------------p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 92 -REET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH----------------PAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp -HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------GGGHHHHHHHHHHHHHHHHHH
T ss_pred -cCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC----------------CCCHHHHHHHHHHHHHHHHHH
Confidence 7894 68899999999999999999999999999993 3333 4455666665554443
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.01 E-value=3.4e-09 Score=96.24 Aligned_cols=114 Identities=11% Similarity=0.101 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCcc-------HHHH
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGIS-------SMFN 396 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~-------a~~~ 396 (854)
.+..+.+|...|++++|+..+++++... |+++.+++.+|.++...|++++|+.+|++++. ..| .. +.++
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~-~~~~~~~~~~~~~ 82 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE-VGR-ENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHH-HSTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh-hcc-ccchhHHHHHHHH
Confidence 3456788899999999999999999999 99999999999999999999999999999998 444 22 6789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCC
Q 003047 397 NNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGK 458 (854)
Q Consensus 397 nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk 458 (854)
.++|.+|..+|++++|+.+|++++... ++...+..++.++...++
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH-----------------RTPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-----------------CCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999971 245677777777665443
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.01 E-value=2.2e-09 Score=122.84 Aligned_cols=122 Identities=8% Similarity=-0.068 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS---------------SLALFLKSQLEYARRNHRKAIKLLLALSNRT 387 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~---------------~~a~~lla~ly~~~g~~~kAl~~l~kal~~~ 387 (854)
....++.+|..+|++++|+..+++++.+. |++ ..+++.+|.+|+.+|+|++|+++|++++. .
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-~ 346 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG-L 346 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-c
Confidence 45567899999999999999999999999 999 79999999999999999999999999999 7
Q ss_pred CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHH
Q 003047 388 EMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAAR 464 (854)
Q Consensus 388 dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~ 464 (854)
+|. ++.+|+++|.+|..+|++++|+.+|++|+++. +.+..++.+++.++..++++++|..
T Consensus 347 ~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~----------------P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 347 DSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN----------------PQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 884 68899999999999999999999999999982 3456789999999999999998874
No 183
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.00 E-value=2.8e-10 Score=125.10 Aligned_cols=136 Identities=10% Similarity=-0.091 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCH-----------------HHHHHHHHHHHHhcCHHHHHHHHHHhhh
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSS-----------------LALFLKSQLEYARRNHRKAIKLLLALSN 385 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~-----------------~a~~lla~ly~~~g~~~kAl~~l~kal~ 385 (854)
....++.+|...|++++|+..+++++.+. |++. .+++.+|.+|+..|+|++|+++|++++.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45567888999999999999999999999 9987 4899999999999999999999999999
Q ss_pred ccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHH-HCCCcHHHHH
Q 003047 386 RTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYL-ACGKPVLAAR 464 (854)
Q Consensus 386 ~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll-~~Gk~eeAl~ 464 (854)
.+|. +..+|+++|.+|..+|++++|+.+|++++.+. +.+..++.+++.+.. ..++.+++..
T Consensus 259 -~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~----------------p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 259 -EEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA----------------PDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp -HCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------------
T ss_pred -hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7884 68899999999999999999999999999982 345677888888844 4556888999
Q ss_pred HHHHHHHhcCCCHH
Q 003047 465 CFQKSSLVFYKQPL 478 (854)
Q Consensus 465 ~y~kAL~l~P~~~~ 478 (854)
.|.+++...|+++.
T Consensus 321 ~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 321 MYKGIFKGKDEGGA 334 (338)
T ss_dssp --------------
T ss_pred HHHHhhCCCCCCCC
Confidence 99999999998764
No 184
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.98 E-value=4e-09 Score=90.54 Aligned_cols=85 Identities=24% Similarity=0.189 Sum_probs=75.8
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 389 MGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 389 p~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
|...+.+++++|.+|..+|++++|+.+|++++.. .+....+++++|.++...|++++|+.+|++
T Consensus 5 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 5 PGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3345678899999999999999999999999998 244578899999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHH
Q 003047 469 SSLVFYKQPLLWLRLAECCLM 489 (854)
Q Consensus 469 AL~l~P~~~~aw~~La~~~i~ 489 (854)
++.++|+++.+|.++|.++..
T Consensus 69 a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 69 ALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHh
Confidence 999999999999999998873
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.98 E-value=7.4e-10 Score=101.47 Aligned_cols=85 Identities=15% Similarity=0.055 Sum_probs=77.8
Q ss_pred hcCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHH
Q 003047 334 TRNLKHAKREVKLAMNI---ARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYH 410 (854)
Q Consensus 334 ~~~~~~A~~elk~al~~---~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~ 410 (854)
+|++++|++.+++++.+ + |+++.+++.+|.+|+..|++++|+++|++++. .+|. .+.+++++|.+|..+|+++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQG--KDLAECYLGLGSTFRTLGEYRKAEAVLANGVK-QFPN-HQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCCC--ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-chHHHHHHHHHHHHcCCHH
Confidence 58889999999999999 8 99999999999999999999999999999999 7885 6889999999999999999
Q ss_pred HHHHHHHHHHHh
Q 003047 411 TSSVFLSKALSN 422 (854)
Q Consensus 411 eAi~~f~kAL~~ 422 (854)
+|+.+|++++..
T Consensus 79 ~A~~~~~~al~~ 90 (117)
T 3k9i_A 79 QGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999998
No 186
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=7.3e-09 Score=96.68 Aligned_cols=96 Identities=9% Similarity=-0.043 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHH
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS---SLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNL 399 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~---~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnL 399 (854)
..+..+..+...|++++|++.+++++.+. |++ ..+++.+|.++...|++++|+++|++++. .+|. .+.+++++
T Consensus 30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~~~~~~ 105 (148)
T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE-KDGG-DVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTSC-CHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh-hCcc-CHHHHHHH
Confidence 45567889999999999999999999999 998 89999999999999999999999999999 6884 57899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 003047 400 GCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 400 G~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
|.+|..+|++++|+.+|++++..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999999998
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.92 E-value=7e-09 Score=115.60 Aligned_cols=122 Identities=8% Similarity=-0.052 Sum_probs=110.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH----------------hcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMN----------------IARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRT 387 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~----------------~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~ 387 (854)
...++..|...|++++|++.+++++. +. |.+..+++.+|.+|+..|++++|+++|++++. .
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~--~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-~ 302 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ--PVALSCVLNIGACKLKMSDWQGAVDSCLEALE-I 302 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH--HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-h
Confidence 45568899999999999999999999 77 88899999999999999999999999999999 7
Q ss_pred CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHH
Q 003047 388 EMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARC 465 (854)
Q Consensus 388 dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~ 465 (854)
+|. .+.+++++|.+|..+|++++|+.+|++|+++ .+.+..++..++.++..+++++++...
T Consensus 303 ~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l----------------~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI----------------APEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred Cch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 884 6889999999999999999999999999998 344678899999999999998888643
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.90 E-value=8.8e-09 Score=91.65 Aligned_cols=84 Identities=12% Similarity=0.018 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
+.+++++|.+|...|++++|+.+|++++.. .+....+++++|.++..+|++++|+.+|++++.+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA----------------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 568899999999999999999999999998 3456789999999999999999999999999999
Q ss_pred cCCC------HHHHHHHHHHHHHHHh
Q 003047 473 FYKQ------PLLWLRLAECCLMALE 492 (854)
Q Consensus 473 ~P~~------~~aw~~La~~~i~~~~ 492 (854)
+|++ +.+++++|.++...+.
T Consensus 68 ~p~~~~~~~~~~~~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 68 TSTAEHVAIRSKLQYRLELAQGAVGS 93 (111)
T ss_dssp CSSTTSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 9999 9999999999986553
No 189
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.89 E-value=9.1e-09 Score=90.80 Aligned_cols=94 Identities=10% Similarity=-0.010 Sum_probs=86.7
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCC-ccHHHHHHHHHHHHH
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMG-ISSMFNNNLGCIYYQ 405 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~-~~a~~~nnLG~iy~~ 405 (854)
.+.+|...|++++|+..+++++.+. |++..+++.+|.++...|++++|+++|++++. ..|. ....++.++|.+|..
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVIN-VIEDEYNKDVWAAKADALRY 88 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TSCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCcccchHHHHHHHHHHHHH
Confidence 5667788999999999999999999 99999999999999999999999999999999 6773 057889999999999
Q ss_pred c-CCHHHHHHHHHHHHHhc
Q 003047 406 L-AKYHTSSVFLSKALSNS 423 (854)
Q Consensus 406 ~-g~~~eAi~~f~kAL~~~ 423 (854)
+ |++++|+.+|++++...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 89 IEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp CSSCSHHHHHHHHHHGGGC
T ss_pred HhCCHHHHHHHHHHHhhcc
Confidence 9 99999999999999873
No 190
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.89 E-value=1.6e-08 Score=91.73 Aligned_cols=96 Identities=13% Similarity=0.045 Sum_probs=68.6
Q ss_pred HHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHH
Q 003047 375 KAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYL 454 (854)
Q Consensus 375 kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll 454 (854)
+|++.|++++. .+|. .+.+++++|.+|..+|++++|+.+|++++.. .+....+|+++|.+|.
T Consensus 3 ~a~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~ 64 (115)
T 2kat_A 3 AITERLEAMLA-QGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDF----------------DPTYSVAWKWLGKTLQ 64 (115)
T ss_dssp CHHHHHHHHHT-TTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH----------------CCCcHHHHHHHHHHHH
Confidence 56777777777 5673 5667777888888888888888888888776 2344667777888888
Q ss_pred HCCCcHHHHHHHHHHHHhcCC--CHHHHHHHHHHHH
Q 003047 455 ACGKPVLAARCFQKSSLVFYK--QPLLWLRLAECCL 488 (854)
Q Consensus 455 ~~Gk~eeAl~~y~kAL~l~P~--~~~aw~~La~~~i 488 (854)
..|++++|+.+|++++.+.|+ +...+..+...+.
T Consensus 65 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~ 100 (115)
T 2kat_A 65 GQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLR 100 (115)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 888888888888888877774 3455555555444
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.88 E-value=7.8e-10 Score=98.59 Aligned_cols=102 Identities=11% Similarity=0.043 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccc
Q 003047 356 SSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLL 435 (854)
Q Consensus 356 ~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~ 435 (854)
++.+++.+|.+++..|++++|+++|++++. .+|. .+.+++++|.+|..+|++++|+.+|++++.+.+... +
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~----- 73 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT-AQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAE--H----- 73 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTT--S-----
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcc--H-----
Confidence 457889999999999999999999999999 7884 578999999999999999999999999999832110 0
Q ss_pred cccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHH
Q 003047 436 TFSQDKSLLITYNCGLQYLACGKPVLAARCFQKS 469 (854)
Q Consensus 436 ~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kA 469 (854)
......+++++|.++..+|++++|+..|++.
T Consensus 74 ---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 74 ---VAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred ---HHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 0001678899999999999999888776653
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.79 E-value=1.9e-08 Score=116.26 Aligned_cols=146 Identities=6% Similarity=-0.086 Sum_probs=116.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcC---CCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHhhhc-------cCCCcc
Q 003047 326 YKVRFLLLTRNLKHAKREVKLAMNIAR---GKDSS---LALFLKSQLEYARRNHRKAIKLLLALSNR-------TEMGIS 392 (854)
Q Consensus 326 ~K~~lyl~~~~~~~A~~elk~al~~~~---~P~~~---~a~~lla~ly~~~g~~~kAl~~l~kal~~-------~dp~~~ 392 (854)
-++..+..+|++++|+..+++++.+.. ||+++ ..+..+|.+|..+|+|++|+.+|++++.. ..| ..
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp-~~ 392 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA-QL 392 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH-HH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH-HH
Confidence 345557789999999999999999874 46665 56788999999999999999999999973 345 46
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
+..++|||.+|..+|++++|+.+|++||.+....-..+ .|.-.++..+++.++..++++++|...|+++.+.
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~--------Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS--------HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT--------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999955421111 1233567789999999999999999999998776
Q ss_pred cCCCHHHH
Q 003047 473 FYKQPLLW 480 (854)
Q Consensus 473 ~P~~~~aw 480 (854)
.-++-..|
T Consensus 465 ~~~~~~~~ 472 (490)
T 3n71_A 465 ALNNQPMQ 472 (490)
T ss_dssp HHTC----
T ss_pred HhcCCCCc
Confidence 65555555
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.79 E-value=6.6e-08 Score=91.98 Aligned_cols=121 Identities=17% Similarity=0.071 Sum_probs=103.2
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH----cCCHH
Q 003047 335 RNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ----LAKYH 410 (854)
Q Consensus 335 ~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~----~g~~~ 410 (854)
+++++|++.++++.+.. ... +. +|.+|...+.+++|+++|+++.. . ..+.++++||.+|.. .++++
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMF--GC--LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTT--HH--HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHHHHcCC--CHh--hh--HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHH
Confidence 46788999999999887 443 44 99999999999999999999998 3 246789999999999 89999
Q ss_pred HHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003047 411 TSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLA----CGKPVLAARCFQKSSLVFYKQPLLWLRLAE 485 (854)
Q Consensus 411 eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~----~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~ 485 (854)
+|+.+|++|.+. .++.+++++|.+|.. .+++++|+.+|+++.+. .++.+..+|+.
T Consensus 79 ~A~~~~~~Aa~~------------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~~ 137 (138)
T 1klx_A 79 KAAQYYSKACGL------------------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILNN 137 (138)
T ss_dssp HHHHHHHHHHHT------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC--
T ss_pred HHHHHHHHHHcC------------------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHhh
Confidence 999999999986 246899999999999 89999999999999987 56677666653
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.79 E-value=3.1e-08 Score=89.84 Aligned_cols=82 Identities=12% Similarity=0.026 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003047 339 HAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSK 418 (854)
Q Consensus 339 ~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~k 418 (854)
+|++.+++++..+ |+++.+++.+|.+++..|++++|+++|++++. .+|. ...+++++|.+|..+|++++|+.+|++
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALD-FDPT-YSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4788899999999 99999999999999999999999999999999 7884 678999999999999999999999999
Q ss_pred HHHhch
Q 003047 419 ALSNSA 424 (854)
Q Consensus 419 AL~~~~ 424 (854)
++.+.+
T Consensus 79 al~~~~ 84 (115)
T 2kat_A 79 GLAAAQ 84 (115)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 999844
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.76 E-value=4e-08 Score=84.12 Aligned_cols=86 Identities=20% Similarity=0.203 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccc
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLK 433 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~ 433 (854)
|.+..+++.+|.+++..|++++|+++|++++. .+|. .+.++.++|.+|..+|++++|+.+|++++..
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------- 72 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------- 72 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----------
Confidence 35677888999999999999999999999998 6774 5778888999999999999999999999988
Q ss_pred cccccCCccHHHHHHHHHHHHHCC
Q 003047 434 LLTFSQDKSLLITYNCGLQYLACG 457 (854)
Q Consensus 434 ~~~~~~~~~~~~~~nLG~~ll~~G 457 (854)
.+....+++++|.++...|
T Consensus 73 -----~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 73 -----DPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp -----CTTCHHHHHHHHHHHHHHC
T ss_pred -----CCCCHHHHHHHHHHHHhcC
Confidence 3445678888998887654
No 196
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.73 E-value=4.7e-05 Score=91.29 Aligned_cols=133 Identities=9% Similarity=0.034 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcC-CCC-hHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHhhhcCCCCCCCCCCch
Q 003047 658 LLANLAYVELEMENPVKALAAARSLLEL-PDC-SRIYIFLGHIYAAEALCLL-NRPKEAAEHFSMYLSGGDNFDLPFSGE 734 (854)
Q Consensus 658 ~l~~la~v~l~lg~~~~Al~~~~~lL~~-p~~-~~~~~~la~lY~aeAl~~l-gr~~eAl~~l~~~l~~~~~~~~~~~~~ 734 (854)
++...+......|+...|...+.+++.. |.. ...|...|.+ -... ++++.|...|..++..
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~l-----E~~~~~d~e~Ar~ife~~Lk~----------- 499 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYI-----EYHISKDTKTACKVLELGLKY----------- 499 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHH-----HHTTTSCCHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHH-----HHHhCCCHHHHHHHHHHHHHH-----------
Confidence 3445555666789999999999999986 543 3444332221 1234 4599999999999931
Q ss_pred hhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---C
Q 003047 735 DCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPR---S 811 (854)
Q Consensus 735 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~---~ 811 (854)
+|. .+..+...+......|+.+.|..+|++|+...|+ .
T Consensus 500 ----------------------------------~p~-----~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~ 540 (679)
T 4e6h_A 500 ----------------------------------FAT-----DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLL 540 (679)
T ss_dssp ----------------------------------HTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHH
T ss_pred ----------------------------------CCC-----chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 111 2445555666677789999999999999999884 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcccc
Q 003047 812 TEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLP 845 (854)
Q Consensus 812 ~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~ 845 (854)
..++...+-.+.+.|+.+.+..+.++ .+..|.+|
T Consensus 541 ~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 541 KMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 45666667778899999999999988 77777654
No 197
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.70 E-value=0.00024 Score=85.17 Aligned_cols=225 Identities=9% Similarity=0.030 Sum_probs=159.9
Q ss_pred HHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHH
Q 003047 374 RKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSS-VFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQ 452 (854)
Q Consensus 374 ~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi-~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ 452 (854)
+....+|++++. ..|. .+.+|...+.++...|+.++|. ..|++|+.. .|....+|+..+..
T Consensus 326 ~Rv~~~Ye~aL~-~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~----------------~P~s~~Lwl~~a~~ 387 (679)
T 4e6h_A 326 ARMTYVYMQAAQ-HVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQC----------------IPNSAVLAFSLSEQ 387 (679)
T ss_dssp HHHHHHHHHHHH-HTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH----------------CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHH
Confidence 456678888888 6774 6788888888888888888887 899999887 34456778888888
Q ss_pred HHHCCCcHHHHHHHHHHHHhc-----------CC-----------CHHHHHHHHHHHHHHHhccccCCCCCCCCCcccce
Q 003047 453 YLACGKPVLAARCFQKSSLVF-----------YK-----------QPLLWLRLAECCLMALEKGLVAPGRSLSDGSEVKV 510 (854)
Q Consensus 453 ll~~Gk~eeAl~~y~kAL~l~-----------P~-----------~~~aw~~La~~~i~~~~~~~~e~~~~~~~~~~~~~ 510 (854)
....|++++|...|++++... |. .+.+|...+.+.. +.+
T Consensus 388 ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er---R~~---------------- 448 (679)
T 4e6h_A 388 YELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK---RIQ---------------- 448 (679)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH---HHH----------------
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH---HcC----------------
Confidence 889999999999999998763 43 3446766666544 110
Q ss_pred eeccccccceeeeccCCcCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHhhcCCCcccccccCCCCCCccccccc
Q 003047 511 HVIGKGKWRYLVMEDGFRKNGHVDSPEKDDSSLGSDGQPKLSMPLARQCLLNALHLLNYPDLNYSKFGLPSNSSVEESES 590 (854)
Q Consensus 511 ~~vg~g~~r~l~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~sl~~A~~~l~nAL~L~p~~~~~~~~~~~~~~~~~~~~~~ 590 (854)
.++.|+..|..|+...|....
T Consensus 449 -----------------------------------------~l~~AR~vf~~A~~~~~~~~~------------------ 469 (679)
T 4e6h_A 449 -----------------------------------------GLAASRKIFGKCRRLKKLVTP------------------ 469 (679)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHTGGGSCT------------------
T ss_pred -----------------------------------------CHHHHHHHHHHHHHhcCCCCh------------------
Confidence 136699999999876332110
Q ss_pred ccccccccccccccccccccccccccccccCCCcccccCCchhHHHhhhccchhhHhHHhhHHHHHHHHHHHHHHHHHc-
Q 003047 591 SEGASSKNLNHKSLSSLDSKISVGLGQVTANGDAKDQKGGTSLEVIQNSLSYYEDVCRRENQMIKQALLANLAYVELEM- 669 (854)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~l~~la~v~l~l- 669 (854)
.++...|.+-...
T Consensus 470 ------------------------------------------------------------------~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 470 ------------------------------------------------------------------DIYLENAYIEYHIS 483 (679)
T ss_dssp ------------------------------------------------------------------HHHHHHHHHHHTTT
T ss_pred ------------------------------------------------------------------HHHHHHHHHHHHhC
Confidence 0122223344444
Q ss_pred CCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhh
Q 003047 670 ENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCE 748 (854)
Q Consensus 670 g~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~ 748 (854)
+++..|...+.++|. .|..+..+...+. -++..|+.+.|...|++++. ..
T Consensus 484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~-----fe~~~~~~~~AR~lferal~--~~---------------------- 534 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYFATDGEYINKYLD-----FLIYVNEESQVKSLFESSID--KI---------------------- 534 (679)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHH-----HHHHHTCHHHHHHHHHHHTT--TS----------------------
T ss_pred CCHHHHHHHHHHHHHHCCCchHHHHHHHH-----HHHhCCCHHHHHHHHHHHHH--hc----------------------
Confidence 459999999999997 6777666544444 34567999999999999993 11
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 003047 749 ELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRST 812 (854)
Q Consensus 749 ~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~ 812 (854)
|. + .-...+|.-....-...|+.+.+.++..+++...|+++
T Consensus 535 ----------------~~------~-~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 535 ----------------SD------S-HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp ----------------SS------T-THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred ----------------CC------H-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 10 0 01456665566666677999999999999999999874
No 198
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.68 E-value=2.7e-08 Score=87.43 Aligned_cols=59 Identities=14% Similarity=0.064 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhhccCCCccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 362 LKSQLEYARRNHRKAIKLLLALSNRTEMGISSM-FNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 362 lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~-~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
.+|..++..|++++|++.|++++. .+|. .+. +++++|.+|..+|++++|+.+|++++..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQ-TEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH-HCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-HCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344445555555555555555554 3442 233 4444555555555555555555555554
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.64 E-value=1e-07 Score=84.92 Aligned_cols=69 Identities=14% Similarity=0.182 Sum_probs=64.0
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~ 424 (854)
|+++.+++.+|.+|+..|++++|+++|++++. .+|. .+.+|+++|.+|..+|++++|+.+|++++.+.+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVE-TDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999 7885 567899999999999999999999999999843
No 200
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.63 E-value=2.6e-07 Score=100.17 Aligned_cols=145 Identities=11% Similarity=0.022 Sum_probs=118.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCC-----CccHHHHH
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGK--DSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEM-----GISSMFNN 397 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P--~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp-----~~~a~~~n 397 (854)
++.+++|...|++++|++.+.+.+..+ | ++.+++.+.+.++..+|+.++|.+.+++... .+| ++...+..
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~--~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~-~~~d~~~~~d~~l~~L 180 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDND--EAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN-AIEDTVSGDNEMILNL 180 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSS--CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccC--CCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCccccccchHHHHHH
Confidence 467899999999999999999999988 8 8999999999999999999999999999887 566 22233332
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh---
Q 003047 398 NLGCIYYQLA--KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV--- 472 (854)
Q Consensus 398 nLG~iy~~~g--~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l--- 472 (854)
.-+.+....| ++.+|..+|+++....++ ......++| +++++|++++|...+++++++
T Consensus 181 aea~v~l~~g~~~~q~A~~~f~El~~~~p~--------------~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQTFPT--------------WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTTSCS--------------HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhCCC--------------cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhccc
Confidence 2366677777 999999999997665210 002456666 899999999999999988887
Q ss_pred -------cCCCHHHHHHHHHHHHH
Q 003047 473 -------FYKQPLLWLRLAECCLM 489 (854)
Q Consensus 473 -------~P~~~~aw~~La~~~i~ 489 (854)
+|+++.+..+++.|...
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~ 267 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALM 267 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHH
Confidence 48899999999988884
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.63 E-value=1.8e-07 Score=83.35 Aligned_cols=84 Identities=10% Similarity=0.029 Sum_probs=70.0
Q ss_pred CCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHH
Q 003047 388 EMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQ 467 (854)
Q Consensus 388 dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~ 467 (854)
+|. .+.+++++|.+|..+|++++|+.+|++++.. .|....+|+++|.+|...|++++|+.+|+
T Consensus 3 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 65 (100)
T 3ma5_A 3 DPE-DPFTRYALAQEHLKHDNASRALALFEELVET----------------DPDYVGTYYHLGKLYERLDRTDDAIDTYA 65 (100)
T ss_dssp --C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Ccc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 573 6789999999999999999999999999998 34456899999999999999999999999
Q ss_pred HHHHhcCCC--HHHHHHHHHHHH
Q 003047 468 KSSLVFYKQ--PLLWLRLAECCL 488 (854)
Q Consensus 468 kAL~l~P~~--~~aw~~La~~~i 488 (854)
+++.+.|+. ......+...+.
T Consensus 66 ~al~l~~~~~~~~~~~~l~~~l~ 88 (100)
T 3ma5_A 66 QGIEVAREEGTQKDLSELQDAKL 88 (100)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHhhhhcCCchhHHHHHHHHHH
Confidence 999998754 444555555544
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.62 E-value=1.5e-07 Score=108.79 Aligned_cols=156 Identities=6% Similarity=0.047 Sum_probs=114.9
Q ss_pred hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 003047 22 GVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDK-----KPDDP---KILHNIAIAEYFRDGCTDPKKLLEALNNVKNK 93 (854)
Q Consensus 22 ~~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~-----~~~~~---~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~ 93 (854)
.+...++.+..++..+..+|+|++|+.+|+++|++ .|++| .+++|||.+|..++++.. ++...+++
T Consensus 304 ~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~e------A~~~~~~a 377 (490)
T 3n71_A 304 EMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEE------ASHYARRM 377 (490)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHH
Confidence 34556777888888899999999999999999985 56665 679999999987766444 55545554
Q ss_pred HHHHHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhh
Q 003047 94 SEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLY 173 (854)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~ 173 (854)
+..... . ..-++|+-+..++|+|.+|..+|+|++|+.+|++++
T Consensus 378 L~i~~~--~-----------------------------------lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 378 VDGYMK--L-----------------------------------YHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHH--H-----------------------------------SCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHH--H-----------------------------------cCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 432100 0 122489999999999999999999999999999999
Q ss_pred hccCCC---chhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcccc
Q 003047 174 QNIEPI---DETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVGCV 220 (854)
Q Consensus 174 ~~~~~~---~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~~~ 220 (854)
++.+.. +-..-..+.-++..++..+++|++|..+|.+...+..-+++
T Consensus 421 ~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 421 AILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 876543 11223345566779999999999999887766654433333
No 203
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.56 E-value=3.1e-07 Score=104.52 Aligned_cols=103 Identities=5% Similarity=0.050 Sum_probs=84.4
Q ss_pred HhcCHHHHHHHHHHhhhc-------cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCc
Q 003047 369 ARRNHRKAIKLLLALSNR-------TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDK 441 (854)
Q Consensus 369 ~~g~~~kAl~~l~kal~~-------~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~ 441 (854)
..|+|++|+..|++++.. .+| ..+..++|||.+|..+|+|++|+.+|+++|.+.......+ .+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp-~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~--------Hp~ 380 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNV-YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY--------SLN 380 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS--------CHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhch-HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC--------ChH
Confidence 468899999999999973 234 3567899999999999999999999999999854432111 233
Q ss_pred cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc-----CCCHHHH
Q 003047 442 SLLITYNCGLQYLACGKPVLAARCFQKSSLVF-----YKQPLLW 480 (854)
Q Consensus 442 ~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~-----P~~~~aw 480 (854)
-+..++|||.+|..+|++++|+.+|++|+++. |++|.+-
T Consensus 381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 381 VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 46789999999999999999999999999976 7777653
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.53 E-value=3.9e-07 Score=79.82 Aligned_cols=76 Identities=13% Similarity=-0.032 Sum_probs=67.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHH-HHHHHHHHHHHCCCcHHHHHHHHHHHHhcCC
Q 003047 397 NNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLL-ITYNCGLQYLACGKPVLAARCFQKSSLVFYK 475 (854)
Q Consensus 397 nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~-~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~ 475 (854)
.++|.++...|++++|+.+|++++.. .+.... +++++|.+|...|++++|+.+|++++.++|+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT----------------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH----------------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH----------------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 46899999999999999999999998 344567 9999999999999999999999999999999
Q ss_pred CHHHH--HHHHHHHH
Q 003047 476 QPLLW--LRLAECCL 488 (854)
Q Consensus 476 ~~~aw--~~La~~~i 488 (854)
++.+| ..++++..
T Consensus 68 ~~~~~~~~~~~~a~~ 82 (99)
T 2kc7_A 68 SPALQARKMVMDILN 82 (99)
T ss_dssp STHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 99998 55555544
No 205
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.48 E-value=1.1e-06 Score=99.76 Aligned_cols=115 Identities=10% Similarity=0.044 Sum_probs=92.4
Q ss_pred HHHHHhcCHHHHHHHHHHhhhc-------cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccc
Q 003047 365 QLEYARRNHRKAIKLLLALSNR-------TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTF 437 (854)
Q Consensus 365 ~ly~~~g~~~kAl~~l~kal~~-------~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~ 437 (854)
.-+..+|+|++|++.|++++.. .+| .....++|||.+|..+|+|++|+.+++++|.+....-..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~-~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~------- 366 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINI-YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS------- 366 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-------
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccch-HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-------
Confidence 4456789999999999999973 233 3467889999999999999999999999999854432111
Q ss_pred cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc-----CCCHHH---HHHHHHHHH
Q 003047 438 SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF-----YKQPLL---WLRLAECCL 488 (854)
Q Consensus 438 ~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~-----P~~~~a---w~~La~~~i 488 (854)
.|.....++|||.+|..+|++++|+.+|++|+++. |++|.+ ..+|++|..
T Consensus 367 -Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 367 -HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp -CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 23346789999999999999999999999999876 777765 566777665
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.33 E-value=9.5e-06 Score=89.66 Aligned_cols=132 Identities=14% Similarity=0.021 Sum_probs=102.3
Q ss_pred HHHHHHHHhc---CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHH----HHHH----HHHH--hhhccCCCcc
Q 003047 326 YKVRFLLLTR---NLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHR----KAIK----LLLA--LSNRTEMGIS 392 (854)
Q Consensus 326 ~K~~lyl~~~---~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~----kAl~----~l~k--al~~~dp~~~ 392 (854)
.+++-|+..+ .+.+|+..++++++++ |++..++-.++..|.....+. ..+. .+.. .+. .+| ..
T Consensus 201 Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~-~~~-~~ 276 (372)
T 3ly7_A 201 YQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP-ELN-NL 276 (372)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG-GGT-TC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc-cCC-cC
Confidence 4566666654 4578999999999999 999999998888876322211 1111 1111 112 456 36
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
+.++..++..+...|++++|+.++++|+.+ ++....|.-+|.++...|++++|++.|.+|+.+
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~L-----------------n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDL-----------------EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 788888999999899999999999999998 234677788899999999999999999999999
Q ss_pred cCCCHH
Q 003047 473 FYKQPL 478 (854)
Q Consensus 473 ~P~~~~ 478 (854)
+|..+.
T Consensus 340 ~P~~~t 345 (372)
T 3ly7_A 340 RPGANT 345 (372)
T ss_dssp SCSHHH
T ss_pred CCCcCh
Confidence 998764
No 207
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.26 E-value=7.8e-06 Score=73.67 Aligned_cols=83 Identities=14% Similarity=-0.015 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 393 SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 393 a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
+.-.+.||.+++.+|+|..|+.+|++|+.....-. . .......+++++|.++..+|++++|+.++++++.+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~--~-------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE--I-------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--C-------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC--C-------CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34566799999999999999999999999732110 0 02346789999999999999999999999999999
Q ss_pred cCCCHHHHHHHH
Q 003047 473 FYKQPLLWLRLA 484 (854)
Q Consensus 473 ~P~~~~aw~~La 484 (854)
.|+++.+..+++
T Consensus 76 ~P~~~~~~~n~~ 87 (104)
T 2v5f_A 76 DPEHQRANGNLK 87 (104)
T ss_dssp CTTCHHHHHHHH
T ss_pred CCCCHHHHhhHH
Confidence 999999999988
No 208
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.25 E-value=0.0013 Score=75.77 Aligned_cols=109 Identities=17% Similarity=0.113 Sum_probs=68.5
Q ss_pred Ccchhh-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHH
Q 003047 18 EDDSGV-LSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEE 96 (854)
Q Consensus 18 ~~~~~~-~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 96 (854)
|..-|. ...+..++..++..|-.|+++.+..+|++++..-| +.++|..-. .|..+............ ..++..
T Consensus 4 e~~~~~~i~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~--~f~~~~~~~~~~i~~~f---e~al~~ 77 (493)
T 2uy1_A 4 EEKMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYI--EYVRKVSQKKFKLYEVY---EFTLGQ 77 (493)
T ss_dssp --------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHH--HHHHHHC----CTHHHH---HHHHHH
T ss_pred HHHcCcchHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHH--HHHHHhCchHHHHHHHH---HHHHHH
Confidence 344564 67899999999999999999999999999999888 888887655 44443211111111121 222210
Q ss_pred HHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHH----HhhcHHHHHHHHHHh
Q 003047 97 LARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWF----HLHEYAKALSVLEPL 172 (854)
Q Consensus 97 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~----~~~~y~~A~~~~e~l 172 (854)
+ . .|+.+...|......+. .+++.+.+-++|+++
T Consensus 78 v-----------------------------------------g-~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rA 115 (493)
T 2uy1_A 78 F-----------------------------------------E-NYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRA 115 (493)
T ss_dssp S-----------------------------------------T-TCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHH
T ss_pred c-----------------------------------------C-CCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHH
Confidence 0 0 03445557765555543 468899999999999
Q ss_pred hh
Q 003047 173 YQ 174 (854)
Q Consensus 173 ~~ 174 (854)
+.
T Consensus 116 L~ 117 (493)
T 2uy1_A 116 LQ 117 (493)
T ss_dssp HT
T ss_pred Hh
Confidence 99
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.14 E-value=1.1e-05 Score=76.33 Aligned_cols=93 Identities=19% Similarity=0.040 Sum_probs=81.8
Q ss_pred hcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHH
Q 003047 370 RRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNC 449 (854)
Q Consensus 370 ~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nL 449 (854)
.+++++|+++|+++....+| .+. ||.+|...+..++|+.+|++|... .++.+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~----~a~--lg~~y~~g~~~~~A~~~~~~Aa~~------------------g~~~a~~~L 63 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEM----FGC--LSLVSNSQINKQKLFQYLSKACEL------------------NSGNGCRFL 63 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCT----THH--HHHHTCTTSCHHHHHHHHHHHHHT------------------TCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCH----hhh--HHHHHHcCCCHHHHHHHHHHHHcC------------------CCHHHHHHH
Confidence 46899999999999983333 233 999999999999999999999986 256899999
Q ss_pred HHHHHH----CCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 450 GLQYLA----CGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 450 G~~ll~----~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
|.+|.. .+++++|+++|+++.+. +++.++++||.++.
T Consensus 64 g~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 64 GDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQY 104 (138)
T ss_dssp HHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHH
Confidence 999999 89999999999999987 88999999999988
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.12 E-value=5.8e-06 Score=93.96 Aligned_cols=118 Identities=5% Similarity=-0.144 Sum_probs=92.5
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcC---CCCCH---HHHHHHHHHHHHhcCHHHHHHHHHHhhhc-------cCCCccHHH
Q 003047 329 RFLLLTRNLKHAKREVKLAMNIAR---GKDSS---LALFLKSQLEYARRNHRKAIKLLLALSNR-------TEMGISSMF 395 (854)
Q Consensus 329 ~lyl~~~~~~~A~~elk~al~~~~---~P~~~---~a~~lla~ly~~~g~~~kAl~~l~kal~~-------~dp~~~a~~ 395 (854)
.-+..+|++++|++.+++++.+.. ||+++ ..+..+|.+|..+|+|++|+.++++++.. ..| ..+..
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp-~~a~~ 373 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP-VRGVQ 373 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH-HHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh-HHHHH
Confidence 335568999999999999998753 46665 45678999999999999999999999973 355 45788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhc-ccCCccccccccCCccHHHHHHHHHHHHHC
Q 003047 396 NNNLGCIYYQLAKYHTSSVFLSKALSNSASL-RKDKPLKLLTFSQDKSLLITYNCGLQYLAC 456 (854)
Q Consensus 396 ~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l-~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~ 456 (854)
++|||.+|..+|++++|+.+|+||+.+.... +.+ .|...+++.+|+.+...+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~---------Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE---------HSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT---------SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC---------ChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999995432 211 122345667777776543
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.11 E-value=9.3e-06 Score=92.34 Aligned_cols=110 Identities=11% Similarity=0.085 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHH
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLDK-----KPDDP---KILHNIAIAEYFRDGCTDPKKLLEALNNVKNKSEEL 97 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~-----~~~~~---~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 97 (854)
.+.....+.......|+|++|+.+|+++|++ .|+++ .+++|||.+|..++++. +++...++++...
T Consensus 297 ~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~------eA~~~~~~aL~i~ 370 (433)
T 3qww_A 297 YARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWE------GALKYGQKIIKPY 370 (433)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHH------HHHHHHHHHHHHH
Confidence 3444444555555678999999999999985 66775 66899999998776544 4555555555321
Q ss_pred HhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccC
Q 003047 98 ARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIE 177 (854)
Q Consensus 98 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~ 177 (854)
.. . ..-++|+.+..++|+|.+|.++|+|++|+++|++++++++
T Consensus 371 ~~--~-----------------------------------lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 371 SK--H-----------------------------------YPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp HH--H-----------------------------------SCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HH--H-----------------------------------cCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 10 0 1224899999999999999999999999999999999654
Q ss_pred C
Q 003047 178 P 178 (854)
Q Consensus 178 ~ 178 (854)
.
T Consensus 414 ~ 414 (433)
T 3qww_A 414 V 414 (433)
T ss_dssp H
T ss_pred H
Confidence 3
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.98 E-value=4.1e-05 Score=74.20 Aligned_cols=100 Identities=7% Similarity=-0.124 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhchhcccCCccccccccCC-ccHHHHH
Q 003047 372 NHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLA---KYHTSSVFLSKALSNSASLRKDKPLKLLTFSQD-KSLLITY 447 (854)
Q Consensus 372 ~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g---~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~-~~~~~~~ 447 (854)
...++.+.|.+.+. .+| ....+.+++|+++.+.+ +..+++.+|++.+... .| .+.+++|
T Consensus 13 ~l~~~~~~y~~e~~-~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~---------------~p~~~rd~lY 75 (152)
T 1pc2_A 13 DLLKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG---------------SKEEQRDYVF 75 (152)
T ss_dssp HHHHHHHHHHHHHH-TTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS---------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---------------CccchHHHHH
Confidence 34566777777776 455 35778899999999988 5669999999999972 02 3568999
Q ss_pred HHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 448 NCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 448 nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
++|..++++|+|++|.++++++|+++|++..+..-+-.+--
T Consensus 76 ~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~ 116 (152)
T 1pc2_A 76 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 116 (152)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999888665554443
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.87 E-value=4e-05 Score=67.99 Aligned_cols=68 Identities=10% Similarity=-0.046 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHHhcC---HHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 354 KDSSLALFLKSQLEYARRN---HRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~---~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
|+++..++.+|.+++..++ .++|..++++++. .+|. ++.++..+|.++++.|+|++|+.+|++++...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~-~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ-LEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-HCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8888888888888876665 6888888888888 7884 57788888888888888888888888888873
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.84 E-value=0.00029 Score=77.79 Aligned_cols=133 Identities=12% Similarity=0.033 Sum_probs=93.9
Q ss_pred HHHHHHHHHhcCCCCCHHHH--HHHHHHHHHhcC---HHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc---C-CHHH
Q 003047 341 KREVKLAMNIARGKDSSLAL--FLKSQLEYARRN---HRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL---A-KYHT 411 (854)
Q Consensus 341 ~~elk~al~~~~~P~~~~a~--~lla~ly~~~g~---~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~---g-~~~e 411 (854)
..+.+++.... |.++.+| ++.|..++..+. +.+|+.+|+++++ .+|+ .+.++-.++.+|.-. + ....
T Consensus 180 ~~e~~r~~~~~--p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~-lDP~-~a~A~A~la~a~~~~~~~~~~~~~ 255 (372)
T 3ly7_A 180 QRMQETLQKIL--PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ-SSPE-FTYARAEKALVDIVRHSQHPLDEK 255 (372)
T ss_dssp HHHHHHHHHHS--CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH-HCTT-CHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHhccC--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHhccCCCchh
Confidence 34566677777 9988776 788988887654 5899999999999 7995 688888888877521 1 1122
Q ss_pred HHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 003047 412 SSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECCL 488 (854)
Q Consensus 412 Ai~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~i 488 (854)
.+.-..+++.....+.. .+..+.++.-++.+++..|++++|+..+++|+.++|+ ..+|.-+|.++.
T Consensus 256 ~~~~l~~a~~a~~a~~~----------~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~ 321 (372)
T 3ly7_A 256 QLAALNTEIDNIVTLPE----------LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYE 321 (372)
T ss_dssp HHHHHHHHHHHHHTCGG----------GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccc----------CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence 22333444432111110 2345677777888899999999999999999999975 667777787766
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.80 E-value=0.00011 Score=66.12 Aligned_cols=79 Identities=10% Similarity=0.004 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc--C---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCC
Q 003047 356 SSLALFLKSQLEYARRNHRKAIKLLLALSNRT--E---MGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDK 430 (854)
Q Consensus 356 ~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~--d---p~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~ 430 (854)
++.-.+.+|..++..|+|.+|+..|+.++... + ....+.++.+||.+|+++|++++|+.++++++.+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-------- 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-------- 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------
Confidence 45667899999999999999999999999841 1 1135788999999999999999999999999998
Q ss_pred ccccccccCCccHHHHHHHH
Q 003047 431 PLKLLTFSQDKSLLITYNCG 450 (854)
Q Consensus 431 ~l~~~~~~~~~~~~~~~nLG 450 (854)
.|.+..+..|++
T Consensus 76 --------~P~~~~~~~n~~ 87 (104)
T 2v5f_A 76 --------DPEHQRANGNLK 87 (104)
T ss_dssp --------CTTCHHHHHHHH
T ss_pred --------CCCCHHHHhhHH
Confidence 344556677766
No 216
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.76 E-value=0.00013 Score=70.70 Aligned_cols=83 Identities=17% Similarity=0.124 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHhhhccC-CCccHHHHHHHHHHHHHcCCHHHH
Q 003047 337 LKHAKREVKLAMNIARGKDSSLALFLKSQLEYARR---NHRKAIKLLLALSNRTE-MGISSMFNNNLGCIYYQLAKYHTS 412 (854)
Q Consensus 337 ~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g---~~~kAl~~l~kal~~~d-p~~~a~~~nnLG~iy~~~g~~~eA 412 (854)
+..+.+++.+.+..+ |.+..+.|..|..+...+ +.++++.+|+.+++ .+ |....+++++||..|.++|+|++|
T Consensus 14 l~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~-~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP-KGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cCCccchHHHHHHHHHHHHHccCHHHH
Confidence 445667778888888 999999999999999977 77799999999999 56 634578899999999999999999
Q ss_pred HHHHHHHHHh
Q 003047 413 SVFLSKALSN 422 (854)
Q Consensus 413 i~~f~kAL~~ 422 (854)
..|++++|++
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999999
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.68 E-value=0.00015 Score=64.19 Aligned_cols=71 Identities=14% Similarity=0.022 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHh-cCCCcccccc
Q 003047 777 RGTLYVNIAAMFAMQGE---FERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKY-CNHVRFLPSG 847 (854)
Q Consensus 777 ~a~~~~NLa~~~~~~g~---~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~-~~~~~~~~~~ 847 (854)
++..++.+|.++...++ .++|..++++||+++|+++.++++++.++++.|++++|+..+++ ....|.+|+-
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~ 79 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDR 79 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 57888999999988766 79999999999999999999999999999999999999999999 5555556653
No 218
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.43 E-value=0.067 Score=61.45 Aligned_cols=84 Identities=6% Similarity=-0.119 Sum_probs=59.8
Q ss_pred cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHhhhc--cCCCccHHHHHHHHHHHH----HcC
Q 003047 335 RNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRN-HRKAIKLLLALSNR--TEMGISSMFNNNLGCIYY----QLA 407 (854)
Q Consensus 335 ~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~-~~kAl~~l~kal~~--~dp~~~a~~~nnLG~iy~----~~g 407 (854)
++++.+..-+++++... | +...|..-.......+. .++....|+.++.. .+|. ...+|......+. ..+
T Consensus 28 ~~~e~~~~iferal~~~--p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~-s~~iW~~Yi~f~~~~~~~~~ 103 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS--Y-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWD-SYGLYKEYIEEEGKIEDEQT 103 (493)
T ss_dssp TCHHHHHHHHHHHSTTC--C-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTT-CHHHHHHHHHHTSSCSSHHH
T ss_pred CCHHHHHHHHHHHhccC--C-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcc-cHHHHHHHHHHHHhchhhhH
Confidence 89999999999999988 8 77777666666655553 45667788888763 2553 4677765544433 346
Q ss_pred CHHHHHHHHHHHHHh
Q 003047 408 KYHTSSVFLSKALSN 422 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~ 422 (854)
+.+.+-..|++||..
T Consensus 104 ~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 104 RIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhC
Confidence 788899999999985
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.40 E-value=0.00084 Score=71.60 Aligned_cols=107 Identities=7% Similarity=-0.087 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHHHHHH-----hc------CHHHHHHHHHHhhhccCCC-ccHHHHHHHHHHHHHc-----CCHHHHHHHH
Q 003047 354 KDSSLALFLKSQLEYA-----RR------NHRKAIKLLLALSNRTEMG-ISSMFNNNLGCIYYQL-----AKYHTSSVFL 416 (854)
Q Consensus 354 P~~~~a~~lla~ly~~-----~g------~~~kAl~~l~kal~~~dp~-~~a~~~nnLG~iy~~~-----g~~~eAi~~f 416 (854)
|+++++++-.|.++.. .| ...+|...++++++ .+|. ....+|..||.+|... |+.++|..+|
T Consensus 149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle-LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~f 227 (301)
T 3u64_A 149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD-LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAF 227 (301)
T ss_dssp GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH-HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH-hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHH
Confidence 9999998877777643 12 36799999999999 7885 1356899999999996 9999999999
Q ss_pred HHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhcCCC
Q 003047 417 SKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLAC-GKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 417 ~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~-Gk~eeAl~~y~kAL~l~P~~ 476 (854)
+|||++.++ .+...++..|..|... |++++|.+++++++...|..
T Consensus 228 erAL~LnP~---------------~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 228 EHLTRYCSA---------------HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHCCT---------------TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHhCCC---------------CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999321 1256677779999885 99999999999999998874
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.31 E-value=0.00056 Score=72.95 Aligned_cols=85 Identities=12% Similarity=-0.019 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHh-----cCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHH-cC
Q 003047 336 NLKHAKREVKLAMNIARGKD--SSLALFLKSQLEYAR-----RNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQ-LA 407 (854)
Q Consensus 336 ~~~~A~~elk~al~~~~~P~--~~~a~~lla~ly~~~-----g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~-~g 407 (854)
..+.|+..++++++++ |+ +..+|..+|.+|... |+.++|.++|++++. ..|+.+..+++..|..++. +|
T Consensus 178 ~l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~-LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 178 TVHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR-YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH-HCCTTCSHHHHHHHHHTTTTTT
T ss_pred hHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH-hCCCCCchHHHHHHHHHHHhcC
Confidence 4577999999999999 99 677999999999994 999999999999999 7885447788889999988 59
Q ss_pred CHHHHHHHHHHHHHhc
Q 003047 408 KYHTSSVFLSKALSNS 423 (854)
Q Consensus 408 ~~~eAi~~f~kAL~~~ 423 (854)
++++|..++++||...
T Consensus 255 d~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 255 NRAGFDEALDRALAID 270 (301)
T ss_dssp CHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHcCC
Confidence 9999999999999983
No 221
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.92 E-value=0.048 Score=62.83 Aligned_cols=130 Identities=5% Similarity=-0.128 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-cCCCccHHHHHHHHHHHHHcCCHHHHHH
Q 003047 336 NLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR-TEMGISSMFNNNLGCIYYQLAKYHTSSV 414 (854)
Q Consensus 336 ~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~-~dp~~~a~~~nnLG~iy~~~g~~~eAi~ 414 (854)
.+++|.+-++........| |...+..+-..|...|+.++|+++|++.... ..| +...|+.|-..|.+.|+.++|.+
T Consensus 85 ~l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P--d~~tyn~lI~~~~~~g~~~~A~~ 161 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP--RLRSYGPALFGFCRKGDADKAYE 161 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--ccceehHHHHHHHHCCCHHHHHH
Confidence 3455666666666655324 5566677778899999999999999998874 456 36789999999999999999999
Q ss_pred HHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHH--hcCCCHHHHHHHH
Q 003047 415 FLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSL--VFYKQPLLWLRLA 484 (854)
Q Consensus 415 ~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~--l~P~~~~aw~~La 484 (854)
.|++.... . ..++..+|..+-.+|.+.|+.++|++.|++.-+ +.|+.. .+..+-
T Consensus 162 l~~~M~~~----G-----------~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~-T~~~l~ 217 (501)
T 4g26_A 162 VDAHMVES----E-----------VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS-TFDMIE 217 (501)
T ss_dssp HHHHHHHT----T-----------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH-HHHHHH
T ss_pred HHHHHHhc----C-----------CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHH-HHHHHH
Confidence 99998765 1 235677888889999999999999999998765 445533 343333
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.69 E-value=0.0083 Score=56.06 Aligned_cols=95 Identities=7% Similarity=-0.107 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhchhcccCCccccccccCC-ccHHHHH
Q 003047 372 NHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHT---SSVFLSKALSNSASLRKDKPLKLLTFSQD-KSLLITY 447 (854)
Q Consensus 372 ~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~e---Ai~~f~kAL~~~~~l~~~~~l~~~~~~~~-~~~~~~~ 447 (854)
....+.+.|.+.+. .++ ....+-+++++++....+... +|..++..+... .| .+-+.+|
T Consensus 16 ~l~~~~~~y~~e~~-~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~---------------~p~~~Rd~lY 78 (126)
T 1nzn_A 16 DLLKFEKKFQSEKA-AGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG---------------SKEEQRDYVF 78 (126)
T ss_dssp HHHHHHHHHHHHHH-HSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS---------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---------------CcchHHHHHH
Confidence 34455555555554 233 245667778887777776655 777777666541 01 2457888
Q ss_pred HHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHH
Q 003047 448 NCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRL 483 (854)
Q Consensus 448 nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~L 483 (854)
.+|..++++|+|++|..+++..|++.|+|..+..-.
T Consensus 79 ~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 79 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 899999999999999999999999999987765433
No 223
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.68 E-value=0.007 Score=59.08 Aligned_cols=129 Identities=12% Similarity=0.001 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhhc--cCCC-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCC
Q 003047 358 LALFLKSQLEYARRNHRKAIKLLLALSNR--TEMG-----ISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDK 430 (854)
Q Consensus 358 ~a~~lla~ly~~~g~~~kAl~~l~kal~~--~dp~-----~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~ 430 (854)
.+++....-.+..|.|+-|+-....++.. .+|+ ....++..+|..++..++|..|+.+|++||+....+....
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34555566677778888888888886653 2231 2234667799999999999999999999999844332111
Q ss_pred ----ccc-----cccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 003047 431 ----PLK-----LLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLLWLRLAECC 487 (854)
Q Consensus 431 ----~l~-----~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~aw~~La~~~ 487 (854)
... ........+.++-|.++.||..+|++++|+..++. |...-..|++..-||..|
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~-Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG-IPSRQRTPKINMLLANLY 165 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT-SCGGGCCHHHHHHHHHHC
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc-CCchhcCHHHHHHHHHHh
Confidence 000 00111233568889999999999999999998765 445556677777777654
No 224
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.62 E-value=0.096 Score=60.29 Aligned_cols=92 Identities=9% Similarity=-0.138 Sum_probs=75.1
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-cCCCccHHHHHHHHHHHHHc
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR-TEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~-~dp~~~a~~~nnLG~iy~~~ 406 (854)
...|...|++++|.+-++........| +...+..+=..|...|+.++|.++|.+.... ..| +...|+.|-..|.+.
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P--d~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP--EEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHhhC
Confidence 345678899999999999988875325 4555566667789999999999999999874 456 367899999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 003047 407 AKYHTSSVFLSKALSN 422 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~ 422 (854)
|+.++|...|++.-..
T Consensus 189 g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 189 KNADKVYKTLQRLRDL 204 (501)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999996654
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.36 E-value=0.028 Score=52.48 Aligned_cols=85 Identities=15% Similarity=0.107 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHH---HHHHHHHhhhccC-CCccHHHHHHHHHHHHHcCCHHH
Q 003047 336 NLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRK---AIKLLLALSNRTE-MGISSMFNNNLGCIYYQLAKYHT 411 (854)
Q Consensus 336 ~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~k---Al~~l~kal~~~d-p~~~a~~~nnLG~iy~~~g~~~e 411 (854)
.+..+.+++.+.+..+ +....+.|..|..+....+... +|.+++.+++ .+ |......++.||..|+++|+|++
T Consensus 16 ~l~~~~~~y~~e~~~~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~-~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-KGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 4455667777777878 9999999999999997776666 9999999999 45 53456788889999999999999
Q ss_pred HHHHHHHHHHhc
Q 003047 412 SSVFLSKALSNS 423 (854)
Q Consensus 412 Ai~~f~kAL~~~ 423 (854)
|..+++..|++.
T Consensus 93 A~~~~~~lL~~e 104 (126)
T 1nzn_A 93 ALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999983
No 226
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.29 E-value=0.34 Score=53.94 Aligned_cols=132 Identities=15% Similarity=0.049 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-----cCC
Q 003047 319 LKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS----SLALFLKSQLEYARRNHRKAIKLLLALSNR-----TEM 389 (854)
Q Consensus 319 ~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~----~~a~~lla~ly~~~g~~~kAl~~l~kal~~-----~dp 389 (854)
++..+....+.+|+..|++.+|.+.++++...-...++ .+.+.+-..+|...+|+.++-..|.++... .+|
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 46667778899999999999999999998886521223 355677899999999999999999998763 233
Q ss_pred CccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHH
Q 003047 390 GISSMFNNNLGCIYY-QLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVL 461 (854)
Q Consensus 390 ~~~a~~~nnLG~iy~-~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~ee 461 (854)
...+.+...-|.+|. ..++|.+|..+|-+++....... .+....++..++.|-+..+...+
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-----------~~~~~~~lkYlvL~aLl~~~r~e 238 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVD-----------SVKALTSLKYMLLCKIMLGQSDD 238 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-----------HHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccc-----------cHHHHHHHHHHHHHHHHcCCHHH
Confidence 222333334488999 89999999999999987532111 11223444557788888777433
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.18 E-value=0.013 Score=57.26 Aligned_cols=143 Identities=13% Similarity=0.091 Sum_probs=81.4
Q ss_pred hhhhHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 003047 21 SGVLSVTA--TLAKEAALYFQSRKFDECLDLLKQLLDKKPDD---------PKILHNIAIAEYFRDGCTDPKKLLEALNN 89 (854)
Q Consensus 21 ~~~~~~~~--~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~---------~~~l~nla~~~~~~~~~~~~~~~~~~l~~ 89 (854)
||..+... .|+.+.-..+..|.|+.|+-+...++....++ .+++..+|.+.|..+.|.. +...
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrr------A~~~ 85 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRN------AVSK 85 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHH------HHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHH------HHHH
Confidence 44444433 47788889999999999999999988763332 3578888988887765444 5555
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHH
Q 003047 90 VKNKSEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVL 169 (854)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~ 169 (854)
++++++..... .+.+.+ . .+.+ ..++++.+ .+.+......|.+|.+|..++++.+|+.++
T Consensus 86 y~qALq~~k~l-~k~~s~-------~--~~~~-~~ss~p~s---------~~~~~e~Elkykia~C~~~l~~~~~Ai~~L 145 (167)
T 3ffl_A 86 YTMALQQKKAL-SKTSKV-------R--PSTG-NSASTPQS---------QCLPSEIEVKYKLAECYTVLKQDKDAIAIL 145 (167)
T ss_dssp HHHHHHHHHCC----------------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHH-hcCCCc-------c--cccc-ccCCCccc---------ccccchHHHHHHHHHHHHHHCCHHHHHHHH
Confidence 55554322100 011110 0 0000 00011100 111224568899999999999999999999
Q ss_pred HHhhhccCCCchhhHHHHHHHHHHHH
Q 003047 170 EPLYQNIEPIDETTALQICLLLLDVA 195 (854)
Q Consensus 170 e~l~~~~~~~~e~~~~~~~l~l~~vy 195 (854)
|.+=...+. -++.++|+.+|
T Consensus 146 e~Ip~k~Rt------~kvnm~LakLy 165 (167)
T 3ffl_A 146 DGIPSRQRT------PKINMLLANLY 165 (167)
T ss_dssp HTSCGGGCC------HHHHHHHHHHC
T ss_pred hcCCchhcC------HHHHHHHHHHh
Confidence 776442222 14677787776
No 228
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.64 E-value=0.31 Score=46.31 Aligned_cols=76 Identities=8% Similarity=-0.055 Sum_probs=60.7
Q ss_pred cHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 392 SSMFNNNLGCIYYQLAKY---HTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 392 ~a~~~nnLG~iy~~~g~~---~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
.+..-+++++++.+..+. .++|..++..+...+ ..+-+.+|.++..++++|+|++|..+.+.
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~---------------~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~ 102 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE---------------SRRRECLYYLTIGCYKLGEYSMAKRYVDT 102 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCC---------------STHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc---------------cchhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 467778898888877665 468888888777511 13457889999999999999999999999
Q ss_pred HHHhcCCCHHHHHH
Q 003047 469 SSLVFYKQPLLWLR 482 (854)
Q Consensus 469 AL~l~P~~~~aw~~ 482 (854)
.|++.|+|..+..-
T Consensus 103 lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 103 LFEHERNNKQVGAL 116 (144)
T ss_dssp HHHTCCCCHHHHHH
T ss_pred HHhcCCCcHHHHHH
Confidence 99999999776433
No 229
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.37 E-value=0.28 Score=46.08 Aligned_cols=87 Identities=7% Similarity=-0.041 Sum_probs=63.9
Q ss_pred HHHHHHhhhccCCCccHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHH
Q 003047 377 IKLLLALSNRTEMGISSMFNNNLGCIYYQLAKY---HTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQY 453 (854)
Q Consensus 377 l~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~---~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~l 453 (854)
.+.|++-+. ..| .+.+-+++++++.+..+. .++|..++..+...+ ..+-+.+|.++..+
T Consensus 27 ~~qy~~E~~-~~v--s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~---------------~~~Rd~LYyLAvg~ 88 (134)
T 3o48_A 27 RQQVVSEGG-PTA--TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE---------------SRRRECLYYLTIGC 88 (134)
T ss_dssp HHHHHHTTG-GGS--CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG---------------GGHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCC--ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc---------------chhHHHHHHHHHHH
Confidence 344444323 455 356777788877766654 478888888777521 12467889999999
Q ss_pred HHCCCcHHHHHHHHHHHHhcCCCHHHHH
Q 003047 454 LACGKPVLAARCFQKSSLVFYKQPLLWL 481 (854)
Q Consensus 454 l~~Gk~eeAl~~y~kAL~l~P~~~~aw~ 481 (854)
.++|+|++|..+.+..|++.|+|..+..
T Consensus 89 yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 89 YKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp HHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 9999999999999999999999987643
No 230
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=94.25 E-value=5.6 Score=44.14 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=97.7
Q ss_pred cchhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Q 003047 19 DDSGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDKKPDDP-----KILHNIAIAEYFRDGCTDPKKLLEALNNVKNK 93 (854)
Q Consensus 19 ~~~~~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~~~-----~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~ 93 (854)
|+.++..+=+.+..-|-.+...|++++-.+++..+...-+.-+ ++--+| +.++..--.. ....++-+.+.
T Consensus 11 ~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l--~~~~~~~~~~---~~~~~~~~~~~ 85 (394)
T 3txn_A 11 DEERIRIKEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSL--VDMFLDMDAG---TGIEVQLCKDC 85 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHH--HHHHTTSCCC---HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHH--HHHHhcCCCc---HHHHHHHHHHH
Confidence 3345666777888899999999999999999998877544332 323222 2333321111 11222223333
Q ss_pred HHHHHhhhcccCCCCCCCCCcccCCCCCCCcccccccccccCCcccccchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhh
Q 003047 94 SEELARATGEQTEGGGNIGSKVGLGSKGSGVVGNQVSAANSGSLVYMDEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLY 173 (854)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~ 173 (854)
++- + ..+ .. ..+ ..-+-..+|.+|+..|+|.+|++++.++.
T Consensus 86 ~~~-a--~~~-~r-------------------------------~fl----r~~l~~kL~~l~~~~~~y~~a~~~i~~l~ 126 (394)
T 3txn_A 86 IEW-A--KQE-KR-------------------------------TFL----RQSLEARLIALYFDTALYTEALALGAQLL 126 (394)
T ss_dssp HHH-H--HHT-TC-------------------------------HHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHH-H--HHH-HH-------------------------------HHH----HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 321 0 000 00 000 00122367999999999999999999999
Q ss_pred hccCCCchh-hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhc
Q 003047 174 QNIEPIDET-TALQICLLLLDVALACHDAFRSADVLIYLEKAFSV 217 (854)
Q Consensus 174 ~~~~~~~e~-~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~ 217 (854)
+....+|+. ....++++-+.+|..++++.++-. .|.++..+
T Consensus 127 ~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~---~l~~a~~~ 168 (394)
T 3txn_A 127 RELKKLDDKNLLVEVQLLESKTYHALSNLPKARA---ALTSARTT 168 (394)
T ss_dssp HHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHH---HHHHHHHH
T ss_pred HHHhccccchhHHHHHHHHHHHHHHhccHHHHHH---HHHHHHhh
Confidence 988888877 477788889999999999999974 45555443
No 231
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.10 E-value=1.2 Score=43.59 Aligned_cols=121 Identities=14% Similarity=0.140 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----------------cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003047 356 SSLALFLKSQLEYARRNHRKAIKLLLALSNR----------------TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKA 419 (854)
Q Consensus 356 ~~~a~~lla~ly~~~g~~~kAl~~l~kal~~----------------~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kA 419 (854)
-..+.+-.+..|....+|++|+.++++++.. .+|.+...+++.+|.+..+.|..++||.+|...
T Consensus 61 T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 61 TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 4567777888888888888888888888841 145566677777899999999999999999999
Q ss_pred HHhch------hc--cc---------------CCccc---------c------ccc-----cCCc-cHHHHHHHHHHHHH
Q 003047 420 LSNSA------SL--RK---------------DKPLK---------L------LTF-----SQDK-SLLITYNCGLQYLA 455 (854)
Q Consensus 420 L~~~~------~l--~~---------------~~~l~---------~------~~~-----~~~~-~~~~~~nLG~~ll~ 455 (854)
+...+ .+ .+ ...++ + ..+ -.|. -....-+.+..|+.
T Consensus 141 f~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~ 220 (242)
T 3kae_A 141 FGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFN 220 (242)
T ss_dssp HHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHH
T ss_pred cCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 88621 00 00 00000 0 000 0111 12233467888999
Q ss_pred CCCcHHHHHHHHHHHHhcCCC
Q 003047 456 CGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 456 ~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
+|-.++...||...-..+|..
T Consensus 221 lg~~d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 221 LGMNDKSKACFELVRRKDPMF 241 (242)
T ss_dssp TTCHHHHHHHHHHHHHHSTTT
T ss_pred cccchhHHHHHHHHHhcCCCc
Confidence 999999999999998888863
No 232
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.97 E-value=0.6 Score=45.57 Aligned_cols=116 Identities=13% Similarity=0.023 Sum_probs=81.9
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCc--
Q 003047 354 KDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKP-- 431 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~-- 431 (854)
|..+++..+++..++-.|.|..|+-++.+... ....| --..||.++++|.+|+.++++.|.-.. ..++
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~lNT------~Ts~Y-Yk~LCy~klKdYkkA~~~le~il~~kv---d~d~~~ 99 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHKLNT------CTSKY-YESLCYKKKKDYKKAIKSLESILEGKV---ERDPDV 99 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHTCCB------HHHHH-HHHHHHHHTTCHHHHHHHHHHHHTTCS---BCCCCC
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHhcch------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccc---ccCccc
Confidence 77778999999999999999999988765322 23333 378899999999999999999996411 1111
Q ss_pred -cccc-cccCCccHHHHH-HHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 432 -LKLL-TFSQDKSLLITY-NCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 432 -l~~~-~~~~~~~~~~~~-nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
+.+. .+..+.+.+.++ .+|..+-+.|.-+||+.+|.....++|=.+.+
T Consensus 100 d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 100 DARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp CHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred ccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 1111 112233444444 56999999999999999999999999986654
No 233
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.92 E-value=3.1 Score=46.95 Aligned_cols=104 Identities=11% Similarity=0.032 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc---c--CC
Q 003047 319 LKLKLQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDS----SLALFLKSQLEYARRNHRKAIKLLLALSNR---T--EM 389 (854)
Q Consensus 319 ~~~~l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~----~~a~~lla~ly~~~g~~~kAl~~l~kal~~---~--dp 389 (854)
-+.++...-+.+|...|++.+|.+.+..+...--+..+ .+.++....+++..+++.+|..++.++... . .|
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~ 214 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYE 214 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcH
Confidence 45677888899999999999999999887543211222 467788999999999999999999997542 1 22
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 390 GISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 390 ~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
.....++..+|.+|...++|.+|..+|..++..
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 233456667899999999999999999999986
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.17 E-value=0.7 Score=44.39 Aligned_cols=109 Identities=8% Similarity=-0.081 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHHHHhcCH------HHHHHHHHHhhhccCCC------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003047 354 KDSSLALFLKSQLEYARRNH------RKAIKLLLALSNRTEMG------ISSMFNNNLGCIYYQLAKYHTSSVFLSKALS 421 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g~~------~kAl~~l~kal~~~dp~------~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~ 421 (854)
|++++.|+.-....-..|+. ++-+++|++++....|. .-...|...+ .+...++.++|-..|+.++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 99999999988888888999 89999999999832221 1133344334 44677999999999999999
Q ss_pred hchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHHH
Q 003047 422 NSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPLL 479 (854)
Q Consensus 422 ~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~a 479 (854)
+. ...+.+|...+..-.++|+...|...+.+++.+.|.....
T Consensus 89 ~h----------------KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 89 NC----------------KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HC----------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred Hh----------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 72 2347788888999999999999999999999999986553
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.49 E-value=4.8 Score=39.57 Aligned_cols=104 Identities=16% Similarity=0.069 Sum_probs=73.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHc
Q 003047 327 KVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQL 406 (854)
Q Consensus 327 K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~ 406 (854)
|+.+.+..|+++.|.+..+.+ ++..-|-.+|..-+..|+++-|.++|.++-. . -.+-.+|...
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------~----~~L~~Ly~~t 73 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS------F----DKLSFLYLVT 73 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------H----HHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC------H----HHHHHHHHHh
Confidence 667788899999999876644 3557899999999999999999999998633 1 2244667778
Q ss_pred CCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 407 AKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 407 g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
|+.+.-.+.-+.|... .+ +.-...+++.+|+++++++.|.+
T Consensus 74 g~~e~L~kla~iA~~~------------------g~---~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 74 GDVNKLSKMQNIAQTR------------------ED---FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp TCHHHHHHHHHHHHHT------------------TC---HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC------------------cc---HHHHHHHHHHcCCHHHHHHHHHH
Confidence 8865544433333332 11 22235667888888888888765
No 236
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.42 E-value=0.98 Score=42.35 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHhc---CHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 356 SSLALFLKSQLEYARR---NHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 356 ~~~a~~lla~ly~~~g---~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
.+.+.|..|..+.... +..++|.+++.+++ .+|......++.|+..|+++|+|++|..+.+..|++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~-~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH-HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4566666666666443 34578888888777 556444666777888888888888888888888887
No 237
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.11 E-value=3.9 Score=42.87 Aligned_cols=130 Identities=6% Similarity=-0.115 Sum_probs=91.3
Q ss_pred HHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCH
Q 003047 330 FLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKY 409 (854)
Q Consensus 330 lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~ 409 (854)
-.+..+++++|++.++..+... |.|......+-++++-.|++++|.+.++-+.+ .+|...+ ++..|.. .
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~-l~p~~~~-----~a~~yr~---l 74 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIK-LFPEYLP-----GASQLRH---L 74 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCGGGHH-----HHHHHHH---H
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCchhhH-----HHHHHHH---H
Confidence 3567899999999999999999 99999999999999999999999999999999 7884322 2223321 1
Q ss_pred HHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH
Q 003047 410 HTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 410 ~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~ 478 (854)
-.|...=.+.+.- ... +..+..++......--++.....|+.++|.+.-.++++..|..+-
T Consensus 75 I~aE~~R~~vfaG-----~~~---P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 75 VKAAQARKDFAQG-----AAT---AKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHHHHHHTTS-----CCC---EECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHHHHHHcC-----CCC---CCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 2222221222221 000 111112333344445688888899999999999999999887654
No 238
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.99 E-value=1 Score=50.50 Aligned_cols=110 Identities=13% Similarity=-0.042 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccc
Q 003047 357 SLALFLKSQLEYARRNHRKAIKLLLALSNR-TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLL 435 (854)
Q Consensus 357 ~~a~~lla~ly~~~g~~~kAl~~l~kal~~-~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~ 435 (854)
..++..+|.+|+..|++++|+++|.++... ..+.....++..+-.++...+++..+..++.|+-.....-. +
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~--d----- 203 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG--D----- 203 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC--C-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC--C-----
Confidence 347789999999999999999999998874 23344567777778888899999999999999977632110 0
Q ss_pred cccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcCCC
Q 003047 436 TFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFYKQ 476 (854)
Q Consensus 436 ~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~ 476 (854)
.........-.|..++..++|.+|..+|..++.-+...
T Consensus 204 ---~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~ 241 (429)
T 4b4t_R 204 ---WERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSI 241 (429)
T ss_dssp ---THHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCS
T ss_pred ---HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCcc
Confidence 01112233445889999999999999999988766443
No 239
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.42 E-value=2.6 Score=39.99 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHHhc---CHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 354 KDSSLALFLKSQLEYARR---NHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 354 P~~~~a~~lla~ly~~~g---~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
+-.+...|..|..+.... +..+++.+++.+++ ..|......++.|+..|+++|+|++|..|.+..|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~-~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK-EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHH-HCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-cCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 345677777777777554 44578899998888 666555677777999999999999999999999988
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.38 E-value=1.5 Score=52.73 Aligned_cols=117 Identities=10% Similarity=-0.076 Sum_probs=81.3
Q ss_pred hcC-HHHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHHhcCHHHHHHHHHHhhhc-------cCCCc---------cHH
Q 003047 334 TRN-LKHAKREVKLAMNIARGKDSSLALF--LKSQLEYARRNHRKAIKLLLALSNR-------TEMGI---------SSM 394 (854)
Q Consensus 334 ~~~-~~~A~~elk~al~~~~~P~~~~a~~--lla~ly~~~g~~~kAl~~l~kal~~-------~dp~~---------~a~ 394 (854)
.++ .+.|+..++++...+ |.....+. .++.+.....+--+|+.++.+.++. ..+.. ...
T Consensus 261 t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 344 577899999999998 86654332 2222223344566788888777641 11111 012
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 395 FNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 395 ~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
.++--+..+...|+|+.|+++=++|... .|.....|+.|+.+|..+|+|+.|+-.++-
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~----------------aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTEL----------------ALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhc----------------CchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 3333367777899999999999999998 455679999999999999999999976443
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.11 E-value=6.1 Score=43.51 Aligned_cols=122 Identities=13% Similarity=-0.027 Sum_probs=84.6
Q ss_pred ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhh--hhhhHhhhhhhhhccCCCCCCCCCCCCCC
Q 003047 688 CSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDC--EQWRVEKIIDCEELNGGPAAAKNPSPEDS 765 (854)
Q Consensus 688 ~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~p 765 (854)
..+...|...+-.+......|++++|+..|+.++. += .+--..+. ..|.......
T Consensus 109 ~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~--L~--rG~~L~~~~~~~w~~~~r~~------------------- 165 (388)
T 2ff4_A 109 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALR--EW--RGPVLDDLRDFQFVEPFATA------------------- 165 (388)
T ss_dssp GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC--CSSTTGGGTTSTTHHHHHHH-------------------
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hc--CCCCCCCCCchhHHHHHHHH-------------------
Confidence 34677777666666666677999999999999993 10 00000111 1122110000
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003047 766 RDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKYCN 839 (854)
Q Consensus 766 ~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~~~ 839 (854)
..+....+...++..+...|++++|...++++++..|-+-.++..++..+.+.|+..+|++.+++.+
T Consensus 166 -------l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 166 -------LVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp -------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0111344555678888899999999999999999999998888888888899999999999998843
No 242
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=88.84 E-value=3.1 Score=49.35 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=27.6
Q ss_pred HHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 003047 329 RFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLAL 383 (854)
Q Consensus 329 ~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~ka 383 (854)
.+.+..|+++.|.+..+ . .++...|-.+|..+...++++.|+++|.++
T Consensus 660 ~~~l~~~~~~~A~~~~~-----~--~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLT-----D--ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHTCHHHHHHHHT-----T--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ehhhhcCCHHHHHHHHH-----h--hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34455666666655432 1 344556666666666666666666666654
No 243
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.61 E-value=3 Score=46.02 Aligned_cols=97 Identities=19% Similarity=0.080 Sum_probs=77.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhcCCC------CC--------------HHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 003047 325 LYKVRFLLLTRNLKHAKREVKLAMNIARGK------DS--------------SLALFLKSQLEYARRNHRKAIKLLLALS 384 (854)
Q Consensus 325 l~K~~lyl~~~~~~~A~~elk~al~~~~~P------~~--------------~~a~~lla~ly~~~g~~~kAl~~l~kal 384 (854)
+-+++-....++.+.|.+.+..++.+.+|| .. ..+...++..+...|++.+|+..+..++
T Consensus 119 ~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~ 198 (388)
T 2ff4_A 119 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT 198 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455556789999999999999998764 21 1233456788889999999999999999
Q ss_pred hccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 003047 385 NRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNS 423 (854)
Q Consensus 385 ~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~ 423 (854)
. .+| ....++-.+-.+|...|+..+|+..|++.-..+
T Consensus 199 ~-~~P-~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 199 F-EHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp H-HST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred H-hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9 789 467788888999999999999999999987753
No 244
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=88.40 E-value=8.1 Score=37.95 Aligned_cols=48 Identities=21% Similarity=0.056 Sum_probs=40.8
Q ss_pred HHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhh
Q 003047 665 VELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 665 v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l 721 (854)
..+++|++..|.+.++++ +....|+.||...+ ..|+++=|..||.+.-
T Consensus 14 LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL-----~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL----NDSITWERLIQEAL-----AQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHH-----HTTCHHHHHHHHHHTT
T ss_pred HHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHH-----HcCChHHHHHHHHHhC
Confidence 478999999999999887 56789999988544 6799999999998865
No 245
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=87.57 E-value=1.9 Score=49.35 Aligned_cols=79 Identities=11% Similarity=-0.019 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcC
Q 003047 395 FNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVFY 474 (854)
Q Consensus 395 ~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P 474 (854)
.+..||++.+-...+..|..||.+|+.+. |.....++.||......|+.-+|+-+|.+++....
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~----------------P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~ 217 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLV----------------PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhC----------------CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCC
Confidence 56679999999999999999999999994 34457899999999999999999999999999998
Q ss_pred CCHHHHHHHHHHHHH
Q 003047 475 KQPLLWLRLAECCLM 489 (854)
Q Consensus 475 ~~~~aw~~La~~~i~ 489 (854)
-.+.++.+|...+-.
T Consensus 218 Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 218 PFPAASTNLQKALSK 232 (497)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHH
Confidence 899999999987764
No 246
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=87.33 E-value=2.1 Score=49.14 Aligned_cols=62 Identities=10% Similarity=0.052 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 359 ALFLKSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 359 a~~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
.+..+|++.-....++.|..+|.++.. ..|. ....||.||.++...|+.-+|+.+|-++|..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~-~~P~-~G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQ-LVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHH-hCCC-CCchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 445567777777778888888888888 6774 5678888888888888888888888888876
No 247
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=85.91 E-value=5.1 Score=38.43 Aligned_cols=37 Identities=8% Similarity=-0.043 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHhhcH------HHHHHHHHHhhhccCCC
Q 003047 143 FDVSVAKLNIAVIWFHLHEY------AKALSVLEPLYQNIEPI 179 (854)
Q Consensus 143 ~~~~~~~~n~a~~~~~~~~y------~~A~~~~e~l~~~~~~~ 179 (854)
|.+...|.+.....-..|+. ++-+++|++++.+++|-
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~ 52 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPD 52 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcc
Confidence 34555676777776666777 77778888888877664
No 248
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=85.53 E-value=3.5 Score=48.96 Aligned_cols=48 Identities=19% Similarity=0.083 Sum_probs=39.0
Q ss_pred HHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003047 365 QLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKA 419 (854)
Q Consensus 365 ~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kA 419 (854)
.+....|++++|+++.+.. + ....|.++|..+.+.++++.|+.+|.++
T Consensus 660 ~~~l~~~~~~~A~~~~~~~----~---~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE----S---AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC----C---CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhh----C---cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3456788999998875432 1 2568999999999999999999999986
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.32 E-value=57 Score=36.40 Aligned_cols=67 Identities=12% Similarity=0.063 Sum_probs=51.9
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCC-chhhHHHHHHHHHHHHHHccCHHHHHHHH
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPI-DETTALQICLLLLDVALACHDAFRSADVL 208 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~-~e~~~~~~~l~l~~vy~~~~~~~kA~~~l 208 (854)
+.+-+.....+|.+|...|+|.+|.+++..+....... +...-..+++....+|+..+++.+|..++
T Consensus 133 E~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~ 200 (445)
T 4b4t_P 133 EVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLS 200 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34566677788999999999999999999887643333 33345556777889999999999998544
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.49 E-value=5.8 Score=50.12 Aligned_cols=121 Identities=17% Similarity=0.153 Sum_probs=87.8
Q ss_pred HHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--c-------------------CC
Q 003047 331 LLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR--T-------------------EM 389 (854)
Q Consensus 331 yl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~--~-------------------dp 389 (854)
++..+..+-+. .++..- |.++..-|++|.+++..|++++|..+|+++-.- . ..
T Consensus 822 l~~~~~~~~~~----~l~~~~--~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 822 LFLFKQYNACM----QLIGWL--NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHSCTTHHH----HHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHhhhHHHHH----HHhhhc--cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 44445554332 355666 889989999999999999999999999997431 0 01
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHH
Q 003047 390 GISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQK 468 (854)
Q Consensus 390 ~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~k 468 (854)
..-+.+|..+..++.+.+.++.+++.-+.|++... .+. .+.....|.++=..++..|+|++|..++..
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~----~~~-------~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKE----TDD-------EDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCC----SCC-------HHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc----CCC-------hhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 11245677788889999999999999999998621 100 001234788889999999999999988754
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.78 E-value=3 Score=50.13 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALS 384 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal 384 (854)
+....+++++..|+++-|++..+++++.. |.+...|+.++.+|..+|+|+.|+-.++.+.
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44456888899999999999999999999 9999999999999999999999998888764
No 252
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=81.03 E-value=13 Score=32.35 Aligned_cols=42 Identities=10% Similarity=0.136 Sum_probs=36.1
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003047 15 TSGEDDSGVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDK 56 (854)
Q Consensus 15 ~~~~~~~~~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~ 56 (854)
.|+..-......+..++.+|+..=..|+|++|+.+|.++++.
T Consensus 3 ~~~~~~~~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 3 SGSSGQDSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp SCSSCCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344455667889999999999999999999999999999883
No 253
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=80.68 E-value=13 Score=46.20 Aligned_cols=98 Identities=11% Similarity=-0.044 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCcccc
Q 003047 359 ALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKL 434 (854)
Q Consensus 359 a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~ 434 (854)
.+..+=+.|...|+.++|.++|...... ..| +...||.|-..|++.|+.++|.+.|++.... +
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P--dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~----G------- 195 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL--TLDMYNAVMLGWARQGAFKELVYVLFMVKDA----G------- 195 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----T-------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC--CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----C-------
Confidence 3445556778888888998888664321 356 3678888888888999999999888887664 1
Q ss_pred ccccCCccHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHhc
Q 003047 435 LTFSQDKSLLITYNCGLQYLACGKP-VLAARCFQKSSLVF 473 (854)
Q Consensus 435 ~~~~~~~~~~~~~nLG~~ll~~Gk~-eeAl~~y~kAL~l~ 473 (854)
..++..+|..+=.++.+.|+. ++|.++|++.....
T Consensus 196 ----~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 196 ----LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred ----CCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 234566676677778888885 67888888877643
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.18 E-value=7.4 Score=40.78 Aligned_cols=59 Identities=17% Similarity=0.322 Sum_probs=50.3
Q ss_pred HHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHH
Q 003047 703 ALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYV 782 (854)
Q Consensus 703 Al~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~ 782 (854)
.+...|.+++|++.+...++ . .|. ++..+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR--~--------------------------------------~P~----------da~~R~ 35 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIK--A--------------------------------------SPK----------DASLRS 35 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHH--T--------------------------------------CTT----------CHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHH--h--------------------------------------CCc----------CHHHHH
Confidence 46678999999999999994 1 143 577778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 003047 783 NIAAMFAMQGEFERAHHFVTQALSILPRS 811 (854)
Q Consensus 783 NLa~~~~~~g~~e~A~~~~~~Al~~~P~~ 811 (854)
-|-..+|..|+|++|.+.++.+..++|..
T Consensus 36 ~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 36 SFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 89999999999999999999999999976
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.24 E-value=5.4 Score=44.58 Aligned_cols=97 Identities=8% Similarity=0.119 Sum_probs=75.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHhhhc----cCCCccHHHHHHHH
Q 003047 326 YKVRFLLLTRNLKHAKREVKLAMNIARGKDS-SLALFLKSQLEYARRNHRKAIKLLLALSNR----TEMGISSMFNNNLG 400 (854)
Q Consensus 326 ~K~~lyl~~~~~~~A~~elk~al~~~~~P~~-~~a~~lla~ly~~~g~~~kAl~~l~kal~~----~dp~~~a~~~nnLG 400 (854)
-++.+|...|++++|.+.+.++...-..+.+ .+.++.+-.++...+++..+..++.++... .+|.....+....|
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~g 215 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYG 215 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence 4688899999999999999999887633333 567788889999999999999999998763 22211122333458
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 003047 401 CIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 401 ~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
.++...++|.+|..+|-.++..
T Consensus 216 l~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 216 IHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHhcc
Confidence 8888999999999999998775
No 256
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.39 E-value=2 Score=49.21 Aligned_cols=139 Identities=9% Similarity=-0.029 Sum_probs=64.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHH---hc---C---CCCCHHHHHHHHHHHHHhcCHHHHH----------HHHHHhhh---
Q 003047 328 VRFLLLTRNLKHAKREVKLAMN---IA---R---GKDSSLALFLKSQLEYARRNHRKAI----------KLLLALSN--- 385 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~---~~---~---~P~~~~a~~lla~ly~~~g~~~kAl----------~~l~kal~--- 385 (854)
...++.++++++|.+....++. +. + -+=....||..+.++-..|+....+ ..+..+++
T Consensus 143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~ 222 (523)
T 4b4t_S 143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS 222 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence 3345567788888887776652 11 0 0233445565666666666655432 12222332
Q ss_pred -ccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHH
Q 003047 386 -RTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAAR 464 (854)
Q Consensus 386 -~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~ 464 (854)
..|+...+.++|-+-..|...+.|++|..+..|+- +|... .++......+|.+|.++...++|.+|.+
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~---------~sn~q~~rY~YY~GRI~a~q~~Y~eA~~ 291 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTD---------VSSSLEARYFFYLSKINAIQLDYSTANE 291 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTT---------SCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCccc---------CCHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 13454567888888999999999999999999874 21100 0012235667889999999999999999
Q ss_pred HHHHHHHhcCCCH
Q 003047 465 CFQKSSLVFYKQP 477 (854)
Q Consensus 465 ~y~kAL~l~P~~~ 477 (854)
+|..|+...|.+.
T Consensus 292 ~L~~A~rkap~~~ 304 (523)
T 4b4t_S 292 YIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHTSSCSCSS
T ss_pred HHHHHHHhCCcch
Confidence 9999999988654
No 257
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=71.65 E-value=28 Score=43.23 Aligned_cols=92 Identities=9% Similarity=-0.095 Sum_probs=70.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-cCCCccHHHHHHHHHHH
Q 003047 328 VRFLLLTRNLKHAKREVKLAMNI---ARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSNR-TEMGISSMFNNNLGCIY 403 (854)
Q Consensus 328 ~~lyl~~~~~~~A~~elk~al~~---~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~~-~dp~~~a~~~nnLG~iy 403 (854)
...|...|++++|.+-++...+. ...|+ ...|..+=.-|...|+.++|+++|.+.... ..| +...|+.|-..+
T Consensus 134 IdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P--DvvTYntLI~gl 210 (1134)
T 3spa_A 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP--DLLSYAAALQCM 210 (1134)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHH
Confidence 44678899999999998765432 11144 455555666899999999999999999874 457 367899898899
Q ss_pred HHcCCH-HHHHHHHHHHHHh
Q 003047 404 YQLAKY-HTSSVFLSKALSN 422 (854)
Q Consensus 404 ~~~g~~-~eAi~~f~kAL~~ 422 (854)
++.|+. ++|...|++....
T Consensus 211 cK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 211 GRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHTCCHHHHHHHHHHHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHc
Confidence 999985 7888999887774
No 258
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=68.24 E-value=5.1 Score=34.89 Aligned_cols=31 Identities=19% Similarity=0.036 Sum_probs=27.2
Q ss_pred HHHHHHHHH--HHHHHHhcCCHHHHHHHHHhhh
Q 003047 691 IYIFLGHIY--AAEALCLLNRPKEAAEHFSMYL 721 (854)
Q Consensus 691 ~~~~la~lY--~aeAl~~lgr~~eAl~~l~~~l 721 (854)
...++||.| .||+|+..|+|+|||+|.+.+.
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 456678888 7899999999999999999987
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=66.05 E-value=1.5e+02 Score=31.93 Aligned_cols=28 Identities=11% Similarity=0.267 Sum_probs=21.0
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHH
Q 003047 389 MGISSMFNNNLGCIYYQLAKYHTSSVFL 416 (854)
Q Consensus 389 p~~~a~~~nnLG~iy~~~g~~~eAi~~f 416 (854)
|...+..+..+|.+|.+-+++.+|..+|
T Consensus 132 ~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 132 PAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 3344667777888888888888888877
No 260
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=65.56 E-value=8.2 Score=33.01 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003047 22 GVLSVTATLAKEAALYFQSRKFDECLDLLKQLLD 55 (854)
Q Consensus 22 ~~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~ 55 (854)
.....|..++.+|++.=..|+|++|+.+|+++++
T Consensus 14 ~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 14 MLEEMARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999987
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=63.11 E-value=59 Score=40.93 Aligned_cols=137 Identities=12% Similarity=0.007 Sum_probs=83.9
Q ss_pred HHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhHhh
Q 003047 665 VELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRVEK 743 (854)
Q Consensus 665 v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 743 (854)
-++..|.+..| ++++. .+..+...+.+|++|+ ..|++++|..+|.++-..... +. +.......+....
T Consensus 821 ~l~~~~~~~~~----~~l~~~~~~~~~~~yl~g~~~L-----~~ge~~~A~~~F~kaa~~~~~-~~-~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 821 KLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYL-----KSKEAVKAVRCFKTTSLVLYS-HT-SQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHSCTTHH----HHHHHHSCCCHHHHHHHHHHHH-----HTTCHHHHHHHHHTCCCSCTT-CC-CSCSSHHHHHHHH
T ss_pred HHHHhhhHHHH----HHHhhhccCCcHHHHHHHHHHH-----hcCCHHHHHHHHHHHhhhhcc-cc-hhhhhhccccccc
Confidence 45666776554 34555 6667767777777555 689999999999998632110 00 0111111110000
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHH---HHHHHH
Q 003047 744 IIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILP-RSTE---ATLTAI 819 (854)
Q Consensus 744 ~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P-~~~~---a~~l~~ 819 (854)
+ +.+.. ...+.-|+.+...+...|-++.+.+..+.|++..+ ++.. .++..+
T Consensus 890 -----~------------------~~~~~--~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~i 944 (1139)
T 4fhn_B 890 -----E------------------KYHHQ--NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHET 944 (1139)
T ss_dssp -----H------------------TTTSC--CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred -----c------------------ccccc--ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHH
Confidence 0 00000 11355677788888888999999999999998764 4432 233333
Q ss_pred -HHHHhcCCHHHHHHHHHh
Q 003047 820 -YVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 820 -y~~L~~G~~~eA~~~lk~ 837 (854)
-..|..|+|++|...|-+
T Consensus 945 Fk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 945 LKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHHHCCSGGGGHHHHH
T ss_pred HHHHHhhCCHHHHHHHHHh
Confidence 347889999999998865
No 262
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=61.83 E-value=10 Score=32.35 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003047 23 VLSVTATLAKEAALYFQSRKFDECLDLLKQLLD 55 (854)
Q Consensus 23 ~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~ 55 (854)
....|..++.+|++.=..|+|++|+.+|+++++
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 457889999999999999999999999999986
No 263
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=60.58 E-value=8.8 Score=33.41 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003047 777 RGTLYVNIAAMFAMQGEFERAHHFVTQALS 806 (854)
Q Consensus 777 ~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~ 806 (854)
.|-.+-..|-.+...|+||+|++|.++|..
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 577777789999999999999999999864
No 264
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.10 E-value=28 Score=39.82 Aligned_cols=73 Identities=12% Similarity=0.040 Sum_probs=55.0
Q ss_pred cchhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCC--CchhhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhhhcc
Q 003047 141 DEFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEP--IDETTALQICLLLLDVALACHDAFRSADVLIYLEKAFSVG 218 (854)
Q Consensus 141 ~~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~--~~e~~~~~~~l~l~~vy~~~~~~~kA~~~l~~lek~l~~~ 218 (854)
|....+.++.-+=..|.+.+.|+.|.++..+.- ++. ..+......++-+|-++..+++|.+|. .+|..++...
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~---~~L~~A~rka 300 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTAN---EYIIAAIRKA 300 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH---HHHHHHTSSC
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHH---HHHHHHHHhC
Confidence 345577777667899999999999999998874 332 223333455666889999999999997 6889887553
No 265
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=58.52 E-value=12 Score=32.15 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003047 24 LSVTATLAKEAALYFQSRKFDECLDLLKQLLDK 56 (854)
Q Consensus 24 ~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~ 56 (854)
-..+..++.+|+..-..|+|++|+.+|+++++.
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356788999999999999999999999999873
No 266
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=57.82 E-value=27 Score=34.85 Aligned_cols=52 Identities=19% Similarity=0.290 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHhcCCH
Q 003047 777 RGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRST-----EATLTAIYVDLMLGKS 828 (854)
Q Consensus 777 ~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~-----~a~~l~~y~~L~~G~~ 828 (854)
.+.-+|-+|.+++.+++|.+|.+++.+|+...|... .++..++-+.|.+|++
T Consensus 13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~i 69 (203)
T 3t5x_A 13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHM 69 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCC
Confidence 688889999999999999999999999999988662 2344444455667774
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=52.64 E-value=2.4e+02 Score=29.97 Aligned_cols=27 Identities=7% Similarity=0.081 Sum_probs=19.0
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003047 391 ISSMFNNNLGCIYYQLAKYHTSSVFLS 417 (854)
Q Consensus 391 ~~a~~~nnLG~iy~~~g~~~eAi~~f~ 417 (854)
..+..+..+|.+|.+-|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 345667777777777777777777764
No 268
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=51.27 E-value=29 Score=39.08 Aligned_cols=75 Identities=19% Similarity=0.227 Sum_probs=54.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccCCccccccccCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh-cC
Q 003047 396 NNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKDKPLKLLTFSQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLV-FY 474 (854)
Q Consensus 396 ~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~~~l~~~~~~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l-~P 474 (854)
.++|=.+|+++++...+...+ ++++....+. .+...+........|.+|..++..++|.+|.++|..|+.. .|
T Consensus 179 ~n~L~kiYFkl~~~~lckni~-k~i~~~~~~p-----~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp 252 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIF-KNFQPKSMLA-----HFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLN 252 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHH-HTHHHHCCCS-----CGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH-HHhccCCCCc-----ChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCC
Confidence 345567999999999998877 4455411000 1122333445678889999999999999999999999999 88
Q ss_pred CC
Q 003047 475 KQ 476 (854)
Q Consensus 475 ~~ 476 (854)
..
T Consensus 253 ~~ 254 (455)
T 3t5v_B 253 LP 254 (455)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 269
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=49.61 E-value=21 Score=30.30 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003047 23 VLSVTATLAKEAALYFQSRKFDECLDLLKQLLD 55 (854)
Q Consensus 23 ~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~ 55 (854)
.+..+..++.+|+..=..|+|++|+.+|.++++
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 577899999999999999999999999999987
No 270
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=48.08 E-value=28 Score=31.70 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 003047 22 GVLSVTATLAKEAALYFQSRKFDECLDLLKQLLDK-------KPDDPKILHNIAIAEYFRDGCTDPKKLLEALNNVKNKS 94 (854)
Q Consensus 22 ~~~~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~-------~~~~~~~l~nla~~~~~~~~~~~~~~~~~~l~~~~~~~ 94 (854)
-.+..+..|+.+|+..=..|+|++|+.+|.++++. .+.+++....|- . +..+|+.-.+.|+..+
T Consensus 13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr-~--------K~~eYl~RAE~LK~~l 83 (117)
T 2cpt_A 13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIR-A--------KCTEYLDRAEKLKEYL 83 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHH-H--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH-H--------HHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999873 335554322111 1 1245555666666665
Q ss_pred H
Q 003047 95 E 95 (854)
Q Consensus 95 ~ 95 (854)
+
T Consensus 84 ~ 84 (117)
T 2cpt_A 84 K 84 (117)
T ss_dssp H
T ss_pred h
Confidence 3
No 271
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=45.22 E-value=2.1e+02 Score=27.14 Aligned_cols=92 Identities=9% Similarity=0.038 Sum_probs=66.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhcCCC--------------------------------------------------C
Q 003047 326 YKVRFLLLTRNLKHAKREVKLAMNIARGK--------------------------------------------------D 355 (854)
Q Consensus 326 ~K~~lyl~~~~~~~A~~elk~al~~~~~P--------------------------------------------------~ 355 (854)
..++=.+.-|..++..+-+.+.++.. | .
T Consensus 12 meAK~~ildG~v~qGveii~k~~~ss--ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~ 89 (172)
T 1wy6_A 12 MDAKKFLLDGYIDEGVKIVLEITKSS--TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNT 89 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHcCCC--CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcc
Confidence 34566677888898888888887766 3 1
Q ss_pred CHHHHHHHHH-HHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 003047 356 SSLALFLKSQ-LEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSN 422 (854)
Q Consensus 356 ~~~a~~lla~-ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~ 422 (854)
+.+ ++.+|. ....+|+-++=-+++..++. .++ -++.++..+|..|.+.|+..+|.+.+++|-+.
T Consensus 90 ~se-~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~-~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 90 LNE-HVNKALDILVIQGKRDKLEEIGREILK-NNE-VSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp CCH-HHHHHHHHHHHTTCHHHHHHHHHHHC---CC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHH-HHHHHHHHHHHhccHhHHHHHHHHHhc-cCC-CChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 111 234443 34477777777778877666 444 25788999999999999999999999999875
No 272
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=43.41 E-value=1.8e+02 Score=35.84 Aligned_cols=120 Identities=7% Similarity=-0.080 Sum_probs=69.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHhhhccCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcc-cCCccc----cc-c
Q 003047 363 KSQLEYARRNHRKAIKLLLALSNRTEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLR-KDKPLK----LL-T 436 (854)
Q Consensus 363 la~ly~~~g~~~kAl~~l~kal~~~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~-~~~~l~----~~-~ 436 (854)
+...+...|.++-|.+ +...+. .+.... +-+|.+|...|++++|..+|+||=.-+..-. ...... +. .
T Consensus 816 l~~~L~~~~~~~~a~e-L~~~~~----~t~~~~-yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ-LIGWLN----SDPIAV-YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHH-HGGGCC----SSHHHH-HHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHH-HHhhcC----CChHHH-HHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 4455666777775544 223332 222333 4489999999999999999988643211000 000000 00 0
Q ss_pred c-cCCccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhc-CCCHH----HHHHHHHHHH
Q 003047 437 F-SQDKSLLITYNCGLQYLACGKPVLAARCFQKSSLVF-YKQPL----LWLRLAECCL 488 (854)
Q Consensus 437 ~-~~~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~-P~~~~----aw~~La~~~i 488 (854)
. ........|.++...+...+-++-+++.-+.||+.- ++++. +|.++-....
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~ 947 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTAC 947 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHh
Confidence 0 011123456678888888888999999999999754 56665 5666554443
No 273
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=43.15 E-value=79 Score=30.31 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhCCCC
Q 003047 28 ATLAKEAALYFQSRKFDECLDLLKQLLDKKPD--DPKILHNIAIAEYFRDGCTD 79 (854)
Q Consensus 28 ~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~~--~~~~l~nla~~~~~~~~~~~ 79 (854)
+.-+..|..+|.+.+|.+.++.+++. +|. ...+.|.||..|....+++.
T Consensus 9 q~a~i~a~~afl~~dYs~VI~~L~~~---~~~~Lp~~~kY~LA~SYI~~e~Ls~ 59 (161)
T 2ynq_A 9 QEAYIQSTELFLQNKYSDVITTLEDY---APEDMPYVIQYELASSYVMTESLTE 59 (161)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHTTS---CGGGSCHHHHHHHHHHHHHTSSSCH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcC---ChhhCChhHHHHHHHHHHHccCCCH
Confidence 55678899999999999999887765 554 46788999988886666553
No 274
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=40.37 E-value=67 Score=31.89 Aligned_cols=61 Identities=11% Similarity=0.051 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHccCHHH
Q 003047 143 FDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQNIEPIDETTALQICLLLLDVALACHDAFR 203 (854)
Q Consensus 143 ~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~~~~~~~e~~~~~~~l~l~~vy~~~~~~~k 203 (854)
.+...++|-+|.+++..++|.+|.+.+.+++..-++.....-..++..|+-+-+-.|+...
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~ 71 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPT 71 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4567788999999999999999999999999976554333344444445555555666543
No 275
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=39.11 E-value=34 Score=28.49 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhc
Q 003047 691 IYIFLGHIYAAEALCLLNRPKEAAEHFSMYLS 722 (854)
Q Consensus 691 ~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~ 722 (854)
..+|+-.+.++|.|+..|++++|+.||-.+++
T Consensus 14 e~~Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~ 45 (73)
T 3ax2_A 14 QKFFLEEIQLGEELLAQGDYEKGVDHLTNAIA 45 (73)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999999999994
No 276
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=38.53 E-value=33 Score=29.07 Aligned_cols=31 Identities=16% Similarity=0.116 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Q 003047 338 KHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSN 385 (854)
Q Consensus 338 ~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~ 385 (854)
++|+..++++++.+ ..|+|++|+.+|..++.
T Consensus 9 ~~Ai~lv~~Ave~D-----------------~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 9 DMARKYAILAVKAD-----------------KEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHH-----------------HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----------------HhccHHHHHHHHHHHHH
Confidence 35666666665555 66888888887777765
No 277
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=37.83 E-value=34 Score=30.40 Aligned_cols=30 Identities=17% Similarity=0.079 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLD 55 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~ 55 (854)
.+++++.+|+..-..|+|++|.++++++-+
T Consensus 17 ~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 17 QARSLAYAALKQAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 578999999999999999999999998743
No 278
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=37.77 E-value=35 Score=29.01 Aligned_cols=31 Identities=16% Similarity=0.069 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Q 003047 338 KHAKREVKLAMNIARGKDSSLALFLKSQLEYARRNHRKAIKLLLALSN 385 (854)
Q Consensus 338 ~~A~~elk~al~~~~~P~~~~a~~lla~ly~~~g~~~kAl~~l~kal~ 385 (854)
++|+.-++++++.+ ..|+|++|+.+|..++.
T Consensus 17 ~~Ai~lv~~Ave~D-----------------~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 17 EMARKYAINAVKAD-----------------KEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHH-----------------HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----------------HhccHHHHHHHHHHHHH
Confidence 44565556555555 67888888888887776
No 279
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=37.01 E-value=36 Score=30.39 Aligned_cols=30 Identities=13% Similarity=-0.007 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLD 55 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~ 55 (854)
.+++++.+|+..-..|+|++|-++++++-+
T Consensus 19 ~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 19 DARSKLLEALKAAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 588999999999999999999999998743
No 280
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=35.86 E-value=48 Score=28.31 Aligned_cols=36 Identities=8% Similarity=0.217 Sum_probs=30.7
Q ss_pred CchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 003047 772 KPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSI 807 (854)
Q Consensus 772 ~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~ 807 (854)
+|....+..+..-|+-.-..|+|++|..+|.++++.
T Consensus 10 ~~~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 10 DPQSTAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455678899999999999999999999999999764
No 281
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=33.99 E-value=43 Score=30.12 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLD 55 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~ 55 (854)
.+++++.+|+..-..|+|++|.++++++-+
T Consensus 21 ~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~~ 50 (109)
T 3k1s_A 21 NARSFAMEALQFAKQGKMAEADEAMVKAKE 50 (109)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 588999999999999999999999998743
No 282
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=33.02 E-value=45 Score=30.53 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLD 55 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~ 55 (854)
.+++++.+|+..-..|+|++|.++++++-+
T Consensus 36 ~ARS~~~eAl~~Ak~gdfe~A~~~l~eA~e 65 (120)
T 3l8r_A 36 NARSIVHEAFDAMREKNYILAEQKLQEAND 65 (120)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578999999999999999999999998743
No 283
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=32.20 E-value=86 Score=26.04 Aligned_cols=31 Identities=16% Similarity=0.438 Sum_probs=28.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 003047 782 VNIAAMFAMQGEFERAHHFVTQALSILPRST 812 (854)
Q Consensus 782 ~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~ 812 (854)
..+|-.+..+|++++|..++-+|+.+.|...
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 5689999999999999999999999998764
No 284
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.57 E-value=3.9e+02 Score=32.74 Aligned_cols=113 Identities=10% Similarity=-0.018 Sum_probs=69.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhhhhH
Q 003047 663 AYVELEMENPVKALAAARSLLE-LPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQWRV 741 (854)
Q Consensus 663 a~v~l~lg~~~~Al~~~~~lL~-~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~~~~ 741 (854)
..-++..|.+.. +++++. .|..+..-+.+|++|+ .+|++++|..+|+++-..... .. +......+..+
T Consensus 817 ~~~L~~~~~~~~----a~eL~~~~~~t~~~~yv~gr~~L-----~~ge~~~A~~~F~kAA~gl~~-~~-~~~~~~~~~~~ 885 (950)
T 4gq2_M 817 VEKLFLFKQYNA----CMQLIGWLNSDPIAVYLKALIYL-----KSKEAVKAVRCFKTTSLVLYS-HT-SQFAVLREFQE 885 (950)
T ss_dssp HHHHHHTTCHHH----HHHHGGGCCSSHHHHHHHHHHHH-----HTTCHHHHHHHHHTCCCTTCS-SC-CSCGGGHHHHH
T ss_pred HHHHHHhcHHHH----HHHHHhhcCCChHHHHHHHHHHH-----HcCCHHHHHHHHHHHhhhccc-Cc-ccccchhhhhh
Confidence 345667777764 456776 7777766667777554 799999999999987732110 00 00000000000
Q ss_pred hhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCC
Q 003047 742 EKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSIL-PRS 811 (854)
Q Consensus 742 ~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~-P~~ 811 (854)
-- +. ..+....+.-|..+...+-..+-++-+.+..+.|++.. +++
T Consensus 886 ll----~~---------------------~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd 931 (950)
T 4gq2_M 886 IA----EK---------------------YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDD 931 (950)
T ss_dssp HH----HH---------------------TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCC
T ss_pred cc----Cc---------------------ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCC
Confidence 00 00 01112245677788888888899999999999999865 444
No 285
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=30.71 E-value=83 Score=27.30 Aligned_cols=63 Identities=11% Similarity=-0.054 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhccCCCcc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhc
Q 003047 361 FLKSQLEYARRNHRKAIKLLLALSNRTEMGIS-----SMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASL 426 (854)
Q Consensus 361 ~lla~ly~~~g~~~kAl~~l~kal~~~dp~~~-----a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l 426 (854)
+..|..++..|+|=+|-++++.+-. ..|... ..+...-|.+|.+.|+. |...|.+++..+..+
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~-~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~ 72 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWL-KATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGL 72 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHh-hCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhC
Confidence 4567888899999999999999888 444311 22222337788889998 999999999975433
No 286
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.91 E-value=2.4e+02 Score=26.90 Aligned_cols=63 Identities=5% Similarity=-0.068 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhccCCCc--c-----HHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhch
Q 003047 361 FLKSQLEYARRNHRKAIKLLLALSNRTEMGI--S-----SMFN-NNLGCIYYQLAKYHTSSVFLSKALSNSA 424 (854)
Q Consensus 361 ~lla~ly~~~g~~~kAl~~l~kal~~~dp~~--~-----a~~~-nnLG~iy~~~g~~~eAi~~f~kAL~~~~ 424 (854)
+..|..+++.|+|=+|-++++.+-. ..+.. . ..+. ...|.+|.+.|+..-|...|.+++..+.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~-~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~ 106 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWY-NYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFR 106 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTT-TTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5566788889999999999999987 33321 1 2223 3346788899999999999999999743
No 287
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=29.79 E-value=2.2e+02 Score=26.93 Aligned_cols=33 Identities=12% Similarity=-0.046 Sum_probs=29.3
Q ss_pred CccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh
Q 003047 440 DKSLLITYNCGLQYLACGKPVLAARCFQKSSLV 472 (854)
Q Consensus 440 ~~~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l 472 (854)
++.++.++.+|.+|-+.|...+|-+.+.+|.+-
T Consensus 122 ~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 122 EVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 456899999999999999999999999998764
No 288
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=29.54 E-value=76 Score=27.40 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003047 25 SVTATLAKEAALYFQSRKFDECLDLLKQLLDKKP 58 (854)
Q Consensus 25 ~~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~~~ 58 (854)
..+..+..+|-..|..|+|-+|+.+|++++.+..
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~te 84 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSD 84 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcccc
Confidence 5688899999999999999999999999987643
No 289
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=29.34 E-value=51 Score=28.88 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhc
Q 003047 691 IYIFLGHIYAAEALCLLNRPKEAAEHFSMYLS 722 (854)
Q Consensus 691 ~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~ 722 (854)
..+|+-.+.++|.|+..|++++|+.||-.+++
T Consensus 17 e~~Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~ 48 (95)
T 1om2_A 17 QKFFLEEIQLGEELLAQGDYEKGVDHLTNAIA 48 (95)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35688888999999999999999999988884
No 290
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=26.72 E-value=1e+02 Score=26.70 Aligned_cols=67 Identities=15% Similarity=0.094 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHh----cCCCccccccccc
Q 003047 782 VNIAAMFAMQGEFERAHHFVTQALSILPRS------TEATLTAIYVDLMLGKSQEALAKLKY----CNHVRFLPSGLQL 850 (854)
Q Consensus 782 ~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~------~~a~~l~~y~~L~~G~~~eA~~~lk~----~~~~~~~~~~~~~ 850 (854)
+.-|..+...|+|=+|.+.++.+-...|+. +.+.+..+..+++.||. |..++++ -..+|.++.|+.+
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~~~~~~~~gidv 81 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLEGLPCPLMGLDW 81 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHTTCCSSBTTBCH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHHhCCCccCCcCH
Confidence 345777788899999999999876655653 55677777888899998 8888877 3455666777654
No 291
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=24.99 E-value=94 Score=29.79 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 003047 777 RGTLYVNIAAMFAMQGEFE-RAHHFVTQALSILPRSTEATLTAIYVDLMLGKSQEALAKLKYC 838 (854)
Q Consensus 777 ~a~~~~NLa~~~~~~g~~e-~A~~~~~~Al~~~P~~~~a~~l~~y~~L~~G~~~eA~~~lk~~ 838 (854)
.....|-||..|...-++. +-++.+-.-+.+..+. ..++-||++..|++++|+.+.++.
T Consensus 40 p~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSde---~yL~YWIyiGRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 40 PYVIQYELASSYVMTESLTEEQRQTVSNNITLKTDE---QYMLYWIYIGRSQSEEALELARTI 99 (161)
T ss_dssp CHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSCH---HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCCH---HHHHHHHHHcCCchHHHHHHHHhc
Confidence 4567899999999996655 4444444444443332 567889999999999999998873
No 292
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=24.62 E-value=5.7e+02 Score=27.82 Aligned_cols=70 Identities=17% Similarity=0.084 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHHhcCHH--HHHHHHHHhhhc-----cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhc
Q 003047 355 DSSLALFLKSQLEYARRNHR--KAIKLLLALSNR-----TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASL 426 (854)
Q Consensus 355 ~~~~a~~lla~ly~~~g~~~--kAl~~l~kal~~-----~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l 426 (854)
..|.++-++|.+.-..--.. .++.+|.+++.. .+.+ ..-|.-+|-+|++.+++.+|+.++-.|-..++.+
T Consensus 253 rYPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~H--vYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~Y 329 (472)
T 3re2_A 253 TYPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHH--IYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKY 329 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred hCchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCC--ccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHc
Confidence 34455555555544322222 266666666652 2333 3345558999999999999999999998886654
No 293
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=23.77 E-value=4.5e+02 Score=30.53 Aligned_cols=128 Identities=13% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhhcCCCCCCCCCCchhhhh
Q 003047 659 LANLAYVELEMENPVKALAAARSLLELPDCSRIYIFLGHIYAAEALCLLNRPKEAAEHFSMYLSGGDNFDLPFSGEDCEQ 738 (854)
Q Consensus 659 l~~la~v~l~lg~~~~Al~~~~~lL~~p~~~~~~~~la~lY~aeAl~~lgr~~eAl~~l~~~l~~~~~~~~~~~~~~~~~ 738 (854)
++.++...+...|+..|...+...-.....+..-.....-..+..+...+...++...+........+
T Consensus 217 ~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~------------ 284 (618)
T 1qsa_A 217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS------------ 284 (618)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC------------
Q ss_pred hhHhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 003047 739 WRVEKIIDCEELNGGPAAAKNPSPEDSRDTMFPKPEEARGTLYVNIAAMFAMQGEFERAHHFVTQALSILPRSTEATLTA 818 (854)
Q Consensus 739 ~~~~~~~d~~~~~~~~~~~~~~~~~~p~~~~p~~~~~a~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~~~a~~l~ 818 (854)
......-.+.++.. ||++.|.+.|.+.-...+..+.+..=+
T Consensus 285 --------------------------------------~~~~e~~~r~Alr~-~d~~~a~~~~~~l~~~~~~~~r~~YW~ 325 (618)
T 1qsa_A 285 --------------------------------------TSLIERRVRMALGT-GDRRGLNTWLARLPMEAKEKDEWRYWQ 325 (618)
T ss_dssp --------------------------------------HHHHHHHHHHHHHH-TCHHHHHHHHHHSCTTGGGSHHHHHHH
T ss_pred --------------------------------------hHHHHHHHHHHHHC-CCHHHHHHHHHHccccccccHhHHHHH
Q ss_pred HHHHHhcCCHHHHHHHHHh
Q 003047 819 IYVDLMLGKSQEALAKLKY 837 (854)
Q Consensus 819 ~y~~L~~G~~~eA~~~lk~ 837 (854)
+..+.++|+.++|..++++
T Consensus 326 ~ra~~~~g~~~~a~~~~~~ 344 (618)
T 1qsa_A 326 ADLLLERGREAEAKEILHQ 344 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
No 294
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=23.48 E-value=1e+02 Score=26.64 Aligned_cols=33 Identities=24% Similarity=0.139 Sum_probs=28.9
Q ss_pred chhhHHHHHHHHHHHHHhhcHHHHHHHHHHhhh
Q 003047 142 EFDVSVAKLNIAVIWFHLHEYAKALSVLEPLYQ 174 (854)
Q Consensus 142 ~~~~~~~~~n~a~~~~~~~~y~~A~~~~e~l~~ 174 (854)
-.+.+..+.+.|+-.=..|+|++|+.+|...+.
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 346788899999999999999999999987766
No 295
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.99 E-value=3.9e+02 Score=25.43 Aligned_cols=73 Identities=14% Similarity=0.071 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--------HHHH-HHHHHHHHhcCCHHHHHHHHHh----cCCCccc
Q 003047 778 GTLYVNIAAMFAMQGEFERAHHFVTQALSILPRS--------TEAT-LTAIYVDLMLGKSQEALAKLKY----CNHVRFL 844 (854)
Q Consensus 778 a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~~P~~--------~~a~-~l~~y~~L~~G~~~eA~~~lk~----~~~~~~~ 844 (854)
..--+--|..+...|+|=+|.++++.+-...|+. +.+. +..++.+++.||..-|..++++ -..+|..
T Consensus 32 ~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~~ 111 (161)
T 2ijq_A 32 LRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPND 111 (161)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCTT
T ss_pred ccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCc
Confidence 3344667888888899999999999986655433 4566 6777889999999999999987 2344556
Q ss_pred cccccc
Q 003047 845 PSGLQL 850 (854)
Q Consensus 845 ~~~~~~ 850 (854)
+.|+.+
T Consensus 112 ~~GIDv 117 (161)
T 2ijq_A 112 YYGVDL 117 (161)
T ss_dssp GGGBCH
T ss_pred cCCcCH
Confidence 666654
No 296
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=22.10 E-value=6.6e+02 Score=25.83 Aligned_cols=29 Identities=7% Similarity=0.107 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Q 003047 323 LQLYKVRFLLLTRNLKHAKREVKLAMNIA 351 (854)
Q Consensus 323 l~l~K~~lyl~~~~~~~A~~elk~al~~~ 351 (854)
-.+|++++.-+.+++++..+..+++++.+
T Consensus 30 ~~v~~AkLaeqaeRyddmv~~mk~v~~~~ 58 (260)
T 2npm_A 30 SNVYMAKLAEQAERYDEMAKYMKDVVEAR 58 (260)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 44678999999999999999999999864
No 297
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=21.81 E-value=84 Score=33.58 Aligned_cols=30 Identities=13% Similarity=0.145 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003047 27 TATLAKEAALYFQSRKFDECLDLLKQLLDK 56 (854)
Q Consensus 27 ~~~l~~~a~~~~~~g~y~~Al~~l~~~l~~ 56 (854)
-.+.+.+|+++|..|+|.+|++.|+.+|-.
T Consensus 102 l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~ 131 (320)
T 3mkr_B 102 LIQRLQLCYQLTTVGKFEEAVEKFRSILLS 131 (320)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 444679999999999999999999999973
No 298
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=21.67 E-value=85 Score=33.59 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003047 26 VTATLAKEAALYFQSRKFDECLDLLKQLLD 55 (854)
Q Consensus 26 ~~~~l~~~a~~~~~~g~y~~Al~~l~~~l~ 55 (854)
...+.+.+|+++|..|+|.+|++.|+.+|-
T Consensus 113 ~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~ 142 (325)
T 3mv2_A 113 VVNEKMNEGYKNFKLNKPDIAIECFREAIY 142 (325)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344578899999999999999999999997
No 299
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=21.65 E-value=1.3e+02 Score=33.76 Aligned_cols=52 Identities=17% Similarity=0.149 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC----------HHHHHHHHHHHHhcCCH
Q 003047 777 RGTLYVNIAAMFAMQGEFERAHHFVTQALSI-LPRS----------TEATLTAIYVDLMLGKS 828 (854)
Q Consensus 777 ~a~~~~NLa~~~~~~g~~e~A~~~~~~Al~~-~P~~----------~~a~~l~~y~~L~~G~~ 828 (854)
.+.-+|-+|.+++.+++|.+|.+++..|+.. .|.. -.++..++-+.|-+|++
T Consensus 219 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~ 281 (455)
T 3t5v_B 219 QIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKM 281 (455)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred eEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCC
Confidence 7888999999999999999999999999998 7754 12333445555566754
No 300
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=21.62 E-value=6.3e+02 Score=25.47 Aligned_cols=28 Identities=7% Similarity=0.166 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhc
Q 003047 324 QLYKVRFLLLTRNLKHAKREVKLAMNIA 351 (854)
Q Consensus 324 ~l~K~~lyl~~~~~~~A~~elk~al~~~ 351 (854)
.+|++++.-+.+++++..+.++++++.+
T Consensus 8 ~v~~AklaeqaeRyddm~~~mk~v~~~~ 35 (234)
T 2br9_A 8 LVYQAKLAEQAERYDEMVESMKKVAGMD 35 (234)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHhccc
Confidence 3578999999999999999999999987
No 301
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.19 E-value=6.8e+02 Score=26.98 Aligned_cols=101 Identities=5% Similarity=-0.125 Sum_probs=65.8
Q ss_pred HHHHHhcCHHHHHHHHHHhhhc---------------cCCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhchhcccC
Q 003047 365 QLEYARRNHRKAIKLLLALSNR---------------TEMGISSMFNNNLGCIYYQLAKYHTSSVFLSKALSNSASLRKD 429 (854)
Q Consensus 365 ~ly~~~g~~~kAl~~l~kal~~---------------~dp~~~a~~~nnLG~iy~~~g~~~eAi~~f~kAL~~~~~l~~~ 429 (854)
.+.....+.++|+++++++... ........+...++.+|...|+.++|..+++++-..+......
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence 3445667889999999876541 0011123444557889999999999999999987664322111
Q ss_pred CccccccccCCc-cHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhcC
Q 003047 430 KPLKLLTFSQDK-SLLITYNCGLQYLACGKPVLAARCFQKSSLVFY 474 (854)
Q Consensus 430 ~~l~~~~~~~~~-~~~~~~nLG~~ll~~Gk~eeAl~~y~kAL~l~P 474 (854)
.+. +...+.-.+..+...+++.++...+-.++...+
T Consensus 164 ---------~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 164 ---------PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp ---------SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ---------cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 111 233444456777788889999888888886543
No 302
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=20.08 E-value=79 Score=27.67 Aligned_cols=31 Identities=16% Similarity=0.074 Sum_probs=27.6
Q ss_pred HHHHHHHHCCCcHHHHHHHHHHHHhcCCCHH
Q 003047 448 NCGLQYLACGKPVLAARCFQKSSLVFYKQPL 478 (854)
Q Consensus 448 nLG~~ll~~Gk~eeAl~~y~kAL~l~P~~~~ 478 (854)
.+|..++..|.++.|+.+|-+|+.++|.-..
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~ 55 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 55 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 5799999999999999999999999998433
Done!