BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003048
(853 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AG7|A Chain A, An Auxilin-Like J-Domain Containing Protein, Jac1 J-Domain
Length = 106
Score = 127 bits (319), Expect = 3e-29, Method: Composition-based stats.
Identities = 56/94 (59%), Positives = 77/94 (81%)
Query: 757 ETLDADVKRWSSGKEGNLRALLSTLQYILGPDSGWHPIPLTEVITSAAVKKAYRKATLCV 816
+ +DA +++WSSGK GN+R+LLSTLQYIL SGW P+PL ++I AV+K+Y++A L +
Sbjct: 9 KNIDAKIRKWSSGKSGNIRSLLSTLQYILWSGSGWKPVPLMDMIEGNAVRKSYQRALLIL 68
Query: 817 HPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNS 850
HPDKLQQ+GAS QKY+ EKVF+LL+EAW+ FN+
Sbjct: 69 HPDKLQQKGASANQKYMAEKVFELLQEAWDHFNT 102
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 58/100 (58%), Gaps = 12/100 (12%)
Query: 755 LAETLDAD---VKRWSSGKEGNLRALLSTLQYIL-GPDSGWHPIPLTEVITSAAVKKAYR 810
+A+ +D + + W GKE N+RALLST+ +L ++ W P+ + +++T VKK YR
Sbjct: 80 MAKEMDPEKLKILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYR 139
Query: 811 KATLCVHPDKLQQRGASIQQKY--ICEKVFDLLKEAWNKF 848
KA L VHPDK + Q Y + +F L +AW++F
Sbjct: 140 KAVLVVHPDK------ATGQPYEQYAKMIFMELNDAWSEF 173
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 5/87 (5%)
Query: 766 WSSGKEGNLRALLSTLQYILGP-DSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQR 824
W GKE N+RALLST+ +L ++ W P+ + +++T VKK YRKA L VHPDK
Sbjct: 26 WIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDK--AT 83
Query: 825 GASIQQKYICEKVFDLLKEAWNKFNSE 851
G +Q + +F L +AW++F ++
Sbjct: 84 GQPYEQ--YAKMIFMELNDAWSEFENQ 108
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 766 WSSGKEGNLRALLSTLQYILGP-DSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQR 824
W GKE N+RALLST +L ++ W P+ +++T VKK YRKA L VHPDK
Sbjct: 13 WIEGKERNIRALLSTXHTVLWAGETKWKPVGXADLVTPEQVKKVYRKAVLVVHPDK--AT 70
Query: 825 GASIQQKYICEKVFDLLKEAWNKFNSE 851
G +Q + +F L +AW++F ++
Sbjct: 71 GQPYEQ--YAKXIFXELNDAWSEFENQ 95
>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
Length = 94
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 763 VKRWSSGKEGNLRALLSTLQYILGP-DSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKL 821
+ W GKE N+RALLST+ +L ++ W P+ + +++T VKK YRKA L VHP K
Sbjct: 8 ILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCK- 66
Query: 822 QQRGASIQQKYICEKVFDLLKEAWNKF 848
G +Q + +F L +AW++F
Sbjct: 67 -ATGQPYEQ--YAKMIFMELNDAWSEF 90
>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 92
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 763 VKRWSSGKEGNLRALLSTLQYILGP-DSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKL 821
+ W GKE N+RALLST+ +L ++ W P+ + +++T VKK YRKA L VHP K
Sbjct: 7 ILEWIEGKERNIRALLSTMHTVLWAGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCK- 65
Query: 822 QQRGASIQQKYICEKVFDLLKEAWNKF 848
G +Q + +F L +AW++F
Sbjct: 66 -ATGQPYEQ--YAKMIFMELNDAWSEF 89
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 791 WHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLL-----KEAW 845
+ + L + +K+AYR+ L HPDK ++ GA + K I E +D+L +E +
Sbjct: 6 YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAE-AYDVLSDPRKREIF 64
Query: 846 NKFNSE 851
+++ E
Sbjct: 65 DRYGEE 70
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 801 TSAAVKKAYRKATLCVHPDK 820
+S A+KKAYRK L HPDK
Sbjct: 22 SSEAIKKAYRKLALKWHPDK 41
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 29.3 bits (64), Expect = 9.1, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 788 DSGWHPIPLTEVITSAAVKKAYRKATLCVHPDK 820
+S +H + L + TS +KK+YRK L HPDK
Sbjct: 17 ESLYHVLGLDKNATSDDIKKSYRKLALKYHPDK 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.125 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,991,580
Number of Sequences: 62578
Number of extensions: 732439
Number of successful extensions: 2179
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2144
Number of HSP's gapped (non-prelim): 56
length of query: 853
length of database: 14,973,337
effective HSP length: 107
effective length of query: 746
effective length of database: 8,277,491
effective search space: 6175008286
effective search space used: 6175008286
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (26.2 bits)