Query 003048
Match_columns 853
No_of_seqs 233 out of 343
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 16:00:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0431 Auxilin-like protein a 100.0 1.5E-40 3.2E-45 368.7 10.1 147 706-852 302-452 (453)
2 smart00271 DnaJ DnaJ molecular 98.8 1.1E-08 2.5E-13 83.3 5.8 58 790-853 3-60 (60)
3 KOG0713 Molecular chaperone (D 98.8 6E-09 1.3E-13 113.1 4.8 64 783-853 11-74 (336)
4 COG0484 DnaJ DnaJ-class molecu 98.7 9.7E-09 2.1E-13 113.2 4.9 57 789-852 5-61 (371)
5 cd06257 DnaJ DnaJ domain or J- 98.7 2.6E-08 5.7E-13 79.7 5.5 53 791-850 3-55 (55)
6 PF00226 DnaJ: DnaJ domain; I 98.6 3.5E-08 7.6E-13 81.9 4.5 56 791-852 3-58 (64)
7 PRK14288 chaperone protein Dna 98.5 6.2E-08 1.4E-12 106.6 5.0 57 789-852 4-60 (369)
8 PRK09430 djlA Dna-J like membr 98.5 1.2E-07 2.5E-12 100.6 6.3 64 788-851 200-263 (267)
9 PRK09510 tolA cell envelope in 98.5 2.5E-05 5.4E-10 87.3 24.4 21 519-539 90-110 (387)
10 PRK14296 chaperone protein Dna 98.5 1.2E-07 2.6E-12 104.6 4.9 56 789-852 5-60 (372)
11 PRK14279 chaperone protein Dna 98.4 1.9E-07 4.2E-12 103.6 5.3 57 789-852 10-66 (392)
12 PRK14285 chaperone protein Dna 98.4 2.6E-07 5.6E-12 101.7 5.2 57 789-852 4-60 (365)
13 KOG0718 Molecular chaperone (D 98.4 2.8E-07 6.1E-12 103.6 4.9 63 785-851 6-68 (546)
14 PRK14299 chaperone protein Dna 98.3 4E-07 8.6E-12 97.3 4.7 56 789-852 5-60 (291)
15 PRK14286 chaperone protein Dna 98.3 4.3E-07 9.3E-12 100.2 4.8 57 789-852 5-61 (372)
16 PRK14295 chaperone protein Dna 98.3 4.9E-07 1.1E-11 100.3 5.2 58 788-852 9-66 (389)
17 PRK14278 chaperone protein Dna 98.3 5E-07 1.1E-11 99.8 5.0 56 789-852 4-59 (378)
18 PRK14277 chaperone protein Dna 98.3 5.3E-07 1.1E-11 99.9 4.8 57 789-852 6-62 (386)
19 PRK14283 chaperone protein Dna 98.3 5.8E-07 1.3E-11 99.2 5.1 56 789-852 6-61 (378)
20 PRK10266 curved DNA-binding pr 98.3 5.9E-07 1.3E-11 96.5 4.9 56 789-852 5-60 (306)
21 PTZ00037 DnaJ_C chaperone prot 98.3 5.2E-07 1.1E-11 101.3 4.6 52 790-852 30-81 (421)
22 PRK14287 chaperone protein Dna 98.3 5.8E-07 1.3E-11 99.1 4.7 56 789-852 5-60 (371)
23 PRK14291 chaperone protein Dna 98.3 6E-07 1.3E-11 99.3 4.9 56 789-852 4-59 (382)
24 PRK14294 chaperone protein Dna 98.3 6.1E-07 1.3E-11 98.7 4.9 57 789-852 5-61 (366)
25 KOG0691 Molecular chaperone (D 98.3 7.8E-07 1.7E-11 96.1 5.5 56 790-852 7-62 (296)
26 PRK14276 chaperone protein Dna 98.3 6.6E-07 1.4E-11 98.9 5.0 56 789-852 5-60 (380)
27 PRK10767 chaperone protein Dna 98.3 6.7E-07 1.5E-11 98.3 5.1 57 789-852 5-61 (371)
28 PRK14280 chaperone protein Dna 98.3 6.8E-07 1.5E-11 98.7 5.0 56 789-852 5-60 (376)
29 PRK14282 chaperone protein Dna 98.3 7.7E-07 1.7E-11 98.0 5.1 58 789-852 5-62 (369)
30 PRK14281 chaperone protein Dna 98.3 8.8E-07 1.9E-11 98.5 5.3 57 789-852 4-60 (397)
31 PRK14297 chaperone protein Dna 98.2 9.8E-07 2.1E-11 97.5 5.0 57 789-852 5-61 (380)
32 PRK14301 chaperone protein Dna 98.2 1.1E-06 2.3E-11 97.1 5.1 57 789-852 5-61 (373)
33 PRK14298 chaperone protein Dna 98.2 9.8E-07 2.1E-11 97.6 4.7 56 789-852 6-61 (377)
34 PRK14300 chaperone protein Dna 98.2 1.4E-06 2.9E-11 96.2 5.3 57 788-852 3-59 (372)
35 KOG0717 Molecular chaperone (D 98.2 1.2E-06 2.6E-11 98.6 4.5 56 789-850 9-64 (508)
36 KOG0719 Molecular chaperone (D 98.2 1.7E-06 3.6E-11 90.8 4.5 60 789-853 15-74 (264)
37 PRK14293 chaperone protein Dna 98.2 2E-06 4.3E-11 95.0 5.3 56 789-852 4-59 (374)
38 PRK14290 chaperone protein Dna 98.1 2.5E-06 5.4E-11 93.9 5.6 58 789-852 4-61 (365)
39 KOG0716 Molecular chaperone (D 98.1 3.4E-06 7.3E-11 90.0 4.8 55 790-851 33-87 (279)
40 PHA03102 Small T antigen; Revi 98.0 5.4E-06 1.2E-10 82.3 5.3 48 793-851 10-59 (153)
41 PRK14289 chaperone protein Dna 98.0 4.2E-06 9.2E-11 92.6 5.0 57 789-852 6-62 (386)
42 COG2214 CbpA DnaJ-class molecu 98.0 5.3E-06 1.1E-10 79.8 4.6 57 790-852 8-64 (237)
43 PTZ00341 Ring-infected erythro 98.0 5.4E-06 1.2E-10 100.1 4.7 56 789-852 574-629 (1136)
44 PRK05014 hscB co-chaperone Hsc 98.0 1.3E-05 2.8E-10 80.4 6.2 59 791-851 4-64 (171)
45 KOG1150 Predicted molecular ch 97.9 1E-05 2.2E-10 83.6 4.4 56 790-851 55-110 (250)
46 KOG0720 Molecular chaperone (D 97.9 1.3E-05 2.7E-10 90.5 5.6 75 770-852 217-291 (490)
47 KOG0715 Molecular chaperone (D 97.9 1.2E-05 2.6E-10 86.5 5.2 63 783-853 38-100 (288)
48 COG3064 TolA Membrane protein 97.9 0.0024 5.2E-08 69.9 22.2 37 778-816 327-363 (387)
49 PTZ00100 DnaJ chaperone protei 97.8 2.1E-05 4.6E-10 75.1 4.9 51 788-849 65-115 (116)
50 KOG0721 Molecular chaperone (D 97.8 2.5E-05 5.4E-10 81.4 5.4 61 783-852 96-156 (230)
51 PRK03578 hscB co-chaperone Hsc 97.8 4E-05 8.7E-10 77.4 6.2 61 789-851 7-69 (176)
52 PRK00294 hscB co-chaperone Hsc 97.8 4.6E-05 1E-09 76.9 6.5 59 791-851 7-67 (173)
53 PRK01356 hscB co-chaperone Hsc 97.8 3.7E-05 8E-10 77.0 5.7 57 791-851 5-63 (166)
54 TIGR00714 hscB Fe-S protein as 97.6 7.2E-05 1.6E-09 74.2 5.8 50 800-851 3-52 (157)
55 PHA02624 large T antigen; Prov 97.3 0.00019 4.1E-09 84.3 4.2 50 791-851 14-65 (647)
56 COG5407 SEC63 Preprotein trans 97.3 0.00028 6.1E-09 79.9 5.4 84 763-851 74-159 (610)
57 KOG0712 Molecular chaperone (D 97.3 0.00025 5.4E-09 78.3 4.4 38 786-823 2-39 (337)
58 KOG0550 Molecular chaperone (D 97.3 0.00051 1.1E-08 77.5 6.8 93 753-851 331-430 (486)
59 PRK09510 tolA cell envelope in 97.2 0.05 1.1E-06 61.6 21.5 12 652-663 255-266 (387)
60 TIGR02794 tolA_full TolA prote 97.1 0.057 1.2E-06 60.2 21.0 41 777-819 285-325 (346)
61 KOG0714 Molecular chaperone (D 96.9 0.00055 1.2E-08 69.5 2.8 56 791-852 6-61 (306)
62 KOG0722 Molecular chaperone (D 96.8 0.00046 1E-08 73.8 1.7 55 790-852 35-89 (329)
63 PRK14284 chaperone protein Dna 96.8 0.00092 2E-08 74.7 3.9 34 790-823 3-36 (391)
64 TIGR02349 DnaJ_bact chaperone 96.6 0.0022 4.8E-08 70.5 4.5 32 791-822 3-34 (354)
65 PRK01773 hscB co-chaperone Hsc 96.5 0.0057 1.2E-07 62.0 6.6 55 794-850 8-64 (173)
66 PRK14292 chaperone protein Dna 96.4 0.0027 5.8E-08 70.4 3.9 33 790-822 4-36 (371)
67 KOG0624 dsRNA-activated protei 96.3 0.0037 8.1E-08 69.7 4.6 61 788-852 394-454 (504)
68 PTZ00121 MAEBL; Provisional 96.0 1.6 3.4E-05 56.3 24.8 19 721-739 1285-1303(2084)
69 KOG1789 Endocytosis protein RM 95.9 0.01 2.3E-07 72.8 5.5 39 802-850 1299-1337(2235)
70 TIGR02794 tolA_full TolA prote 95.1 1.9 4.2E-05 48.4 19.5 17 519-535 78-94 (346)
71 COG3064 TolA Membrane protein 95.1 2.3 5.1E-05 47.5 19.4 19 653-671 258-277 (387)
72 KOG0723 Molecular chaperone (D 95.0 0.042 9E-07 52.5 5.2 47 793-850 61-107 (112)
73 TIGR03835 termin_org_DnaJ term 94.7 0.043 9.3E-07 66.4 5.6 34 790-823 4-37 (871)
74 COG5269 ZUO1 Ribosome-associat 93.8 0.065 1.4E-06 58.3 4.3 47 800-851 58-104 (379)
75 COG1076 DjlA DnaJ-domain-conta 92.6 0.098 2.1E-06 52.7 3.3 60 789-848 114-173 (174)
76 KOG1029 Endocytic adaptor prot 63.8 2E+02 0.0044 36.4 15.7 13 511-523 312-324 (1118)
77 KOG0163 Myosin class VI heavy 63.1 1.3E+02 0.0028 38.0 13.8 15 809-823 1180-1194(1259)
78 KOG0568 Molecular chaperone (D 59.9 16 0.00034 39.9 5.3 65 772-846 30-97 (342)
79 PF14687 DUF4460: Domain of un 58.8 20 0.00044 34.6 5.4 48 800-850 6-53 (112)
80 KOG4364 Chromatin assembly fac 55.3 2.9E+02 0.0064 34.5 15.0 28 751-778 648-675 (811)
81 PF08628 Nexin_C: Sorting nexi 55.0 19 0.00041 33.8 4.5 72 770-843 36-110 (113)
82 KOG0163 Myosin class VI heavy 53.9 2.7E+02 0.0059 35.4 14.5 10 775-784 1119-1128(1259)
83 PLN03086 PRLI-interacting fact 52.8 45 0.00097 40.3 8.0 7 772-778 200-206 (567)
84 PF05262 Borrelia_P83: Borreli 52.8 3.8E+02 0.0083 32.2 15.3 9 367-375 96-104 (489)
85 KOG1029 Endocytic adaptor prot 51.9 1.4E+02 0.003 37.8 11.7 6 802-807 650-655 (1118)
86 PRK12472 hypothetical protein; 51.5 4.9E+02 0.011 31.5 15.7 45 580-625 253-297 (508)
87 PRK06569 F0F1 ATP synthase sub 46.1 1.7E+02 0.0037 30.0 9.9 22 627-648 81-102 (155)
88 KOG1144 Translation initiation 45.9 1E+02 0.0022 38.8 9.5 9 771-779 470-478 (1064)
89 PRK07735 NADH dehydrogenase su 45.0 6E+02 0.013 30.2 16.5 7 786-792 381-387 (430)
90 PRK12472 hypothetical protein; 42.6 3.4E+02 0.0074 32.7 12.7 13 769-781 435-447 (508)
91 KOG1144 Translation initiation 40.3 1.8E+02 0.004 36.8 10.4 7 629-635 294-300 (1064)
92 COG1076 DjlA DnaJ-domain-conta 39.4 42 0.00091 34.1 4.5 46 803-850 18-63 (174)
93 PF00769 ERM: Ezrin/radixin/mo 37.5 5.7E+02 0.012 27.8 17.9 23 754-776 208-230 (246)
94 PF09738 DUF2051: Double stran 34.3 3.8E+02 0.0082 30.3 11.1 22 613-638 1-22 (302)
95 PRK00247 putative inner membra 32.0 6.1E+02 0.013 30.1 12.6 7 637-643 374-380 (429)
96 KOG3192 Mitochondrial J-type c 29.3 94 0.002 32.3 5.0 53 796-850 18-70 (168)
97 PF04094 DUF390: Protein of un 27.4 1.4E+03 0.03 29.3 14.8 109 517-626 502-625 (828)
98 KOG4661 Hsp27-ERE-TATA-binding 25.6 1.4E+03 0.03 28.6 14.8 11 68-78 22-33 (940)
99 PF13340 DUF4096: Putative tra 25.1 61 0.0013 28.5 2.5 41 771-812 24-64 (75)
100 PF03656 Pam16: Pam16; InterP 22.9 1.1E+02 0.0024 30.4 4.1 39 794-839 64-102 (127)
101 KOG2412 Nuclear-export-signal 22.2 1.2E+03 0.026 28.9 12.7 14 780-793 453-466 (591)
102 KOG2689 Predicted ubiquitin re 20.8 6.9E+02 0.015 28.3 9.8 27 534-560 111-137 (290)
No 1
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=100.00 E-value=1.5e-40 Score=368.71 Aligned_cols=147 Identities=54% Similarity=0.880 Sum_probs=141.8
Q ss_pred ccCccCCcHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH----HHhhhhhHHHHhhhhcCCcccHHHHHhhc
Q 003048 706 SDGIEGESAQRCKARLERHRRTAERAAKALAEKNMRDLLAQREQAER----NRLAETLDADVKRWSSGKEGNLRALLSTL 781 (853)
Q Consensus 706 ~~~~~ge~~~r~~ar~~r~~r~~er~a~al~ek~~rd~~~q~eq~er----~~l~d~vd~kI~~W~~GKe~NIRaLLstL 781 (853)
+...-|...+++..+..+++++..+.+..+.++.-+|+...++++++ .++++.||.+|..|..||++|||||||||
T Consensus 302 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~k~~~~~ae~~~e~~r~~e~~d~~I~~W~~GKE~NIRALLSTL 381 (453)
T KOG0431|consen 302 GNTERGKRAESSSTRTKKQMDTFSDLLNPQGFKSTSDEKRPREIAEMRKELSRLMEPLDEEIRRWSEGKEGNIRALLSTL 381 (453)
T ss_pred ccccccccccccccccchhhhhhhhhhccccccchhhhhhHHHHHHHHHHHHhhcchHHHHHHHhcccccccHHHHHHHH
Confidence 44567889999999999999999999999999999999999999999 79999999999999999999999999999
Q ss_pred ccccCCCCCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 782 QYILGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 782 ~~VLW~~~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
||||||+|||+||+|+|||||++|||+||||||||||||++|+|++++|||||+.||++|++||+.|+.++
T Consensus 382 h~VLW~es~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~f~~~~ 452 (453)
T KOG0431|consen 382 HYVLWPESGWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNKFNQQE 452 (453)
T ss_pred hHhhcCccCcccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875
No 2
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=98.77 E-value=1.1e-08 Score=83.33 Aligned_cols=58 Identities=29% Similarity=0.398 Sum_probs=51.1
Q ss_pred CCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhcC
Q 003048 790 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEER 853 (853)
Q Consensus 790 ~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~deer 853 (853)
-|.-|||...++..+||++|+++++.+|||++++. ...+...|..|++||++|.+..|
T Consensus 3 ~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~------~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 3 YYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD------KEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc------hHHHHHHHHHHHHHHHHHcCCCC
Confidence 37789999999999999999999999999998742 35788999999999999998654
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=6e-09 Score=113.07 Aligned_cols=64 Identities=23% Similarity=0.365 Sum_probs=55.8
Q ss_pred cccCCCCCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhcC
Q 003048 783 YILGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEER 853 (853)
Q Consensus 783 ~VLW~~~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~deer 853 (853)
.|+-.-.-|+-|||...++..+||+||||++|++||||++.+. -|...|..||-||++|+|++.
T Consensus 11 ~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp-------~A~e~F~~in~AYEVLsDpek 74 (336)
T KOG0713|consen 11 AVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDP-------NANEKFKEINAAYEVLSDPEK 74 (336)
T ss_pred hhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCH-------HHHHHHHHHHHHHHHhcCHHH
Confidence 3444456789999999999999999999999999999999633 589999999999999999873
No 4
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=9.7e-09 Score=113.24 Aligned_cols=57 Identities=25% Similarity=0.367 Sum_probs=51.4
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
..|+-|+|+.-+++.+|||||||+++++|||+++.. + -|+..|..|++||++|+|.+
T Consensus 5 dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~---~----~AeeKFKEI~eAYEVLsD~e 61 (371)
T COG0484 5 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD---K----EAEEKFKEINEAYEVLSDPE 61 (371)
T ss_pred chhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC---H----HHHHHHHHHHHHHHHhCCHH
Confidence 348899999999999999999999999999999842 1 48999999999999999976
No 5
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=98.69 E-value=2.6e-08 Score=79.73 Aligned_cols=53 Identities=28% Similarity=0.426 Sum_probs=47.8
Q ss_pred CcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhh
Q 003048 791 WHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNS 850 (853)
Q Consensus 791 Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~d 850 (853)
|.-|||...++..+||++|+++++.+|||+.++. ..+...|..|+.||++|++
T Consensus 3 y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~-------~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 3 YDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-------PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-------HHHHHHHHHHHHHHHHhcC
Confidence 6778999999999999999999999999998742 4688999999999999975
No 6
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=98.62 E-value=3.5e-08 Score=81.93 Aligned_cols=56 Identities=27% Similarity=0.392 Sum_probs=49.7
Q ss_pred CcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 791 WHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 791 Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
|.-|||..-++..+||++|+++++.+|||++++.+ -.+...|..|+.||++|++..
T Consensus 3 y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~------~~~~~~~~~i~~Ay~~L~~~~ 58 (64)
T PF00226_consen 3 YEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE------AEAEEKFARINEAYEILSDPE 58 (64)
T ss_dssp HHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH------HHHHHHHHHHHHHHHHHHSHH
T ss_pred HHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh------hhhhHHHHHHHHHHHHhCCHH
Confidence 56789999999999999999999999999997532 468899999999999998864
No 7
>PRK14288 chaperone protein DnaJ; Provisional
Probab=98.54 E-value=6.2e-08 Score=106.58 Aligned_cols=57 Identities=28% Similarity=0.451 Sum_probs=50.4
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|+-|||...+|+.+||+||||+++.+||||++... -|+..|..|++||++|+|.+
T Consensus 4 dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~-------~a~~~f~~i~~AYevLsd~~ 60 (369)
T PRK14288 4 SYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDK-------EAEEKFKLINEAYGVLSDEK 60 (369)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcc-------HHHHHHHHHHHHHHHhccHH
Confidence 3578999999999999999999999999999986421 37889999999999999875
No 8
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.52 E-value=1.2e-07 Score=100.64 Aligned_cols=64 Identities=20% Similarity=0.352 Sum_probs=58.1
Q ss_pred CCCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003048 788 DSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 851 (853)
Q Consensus 788 ~~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~de 851 (853)
..-|+.|+|++.+|+.+||++||++++.+||||+.+.|.+++..-.|+..|..|++||++++..
T Consensus 200 ~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred HhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3467889999999999999999999999999999887888888888999999999999999864
No 9
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=98.51 E-value=2.5e-05 Score=87.31 Aligned_cols=21 Identities=38% Similarity=0.710 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 003048 519 ERVKRQRELEIERLRRIEEER 539 (853)
Q Consensus 519 e~~~~e~e~eke~~r~~~e~~ 539 (853)
+.+..+++.+-++++.+++++
T Consensus 90 eel~~~~~~eq~rlk~le~er 110 (387)
T PRK09510 90 EELQQKQAAEQERLKQLEKER 110 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555556665555444
No 10
>PRK14296 chaperone protein DnaJ; Provisional
Probab=98.47 E-value=1.2e-07 Score=104.61 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=49.8
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|.-|+|...+++.+||+||||+++.+|||+++. . -|+..|..|++||++|+|.+
T Consensus 5 dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~-------~a~~~F~~i~~AyevLsD~~ 60 (372)
T PRK14296 5 DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-P-------DAHDKMVEINEAADVLLDKD 60 (372)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-c-------hHHHHHHHHHHHHHHhcCHH
Confidence 34788999999999999999999999999999863 1 27789999999999999875
No 11
>PRK14279 chaperone protein DnaJ; Provisional
Probab=98.43 E-value=1.9e-07 Score=103.60 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=50.5
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|.-|+|..-+++.+||+||||+++.+||||++.. + -|...|..|++||++|+|.+
T Consensus 10 Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~----~a~~~f~~i~~Ay~vLsD~~ 66 (392)
T PRK14279 10 DFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD---P----AAEERFKAVSEAHDVLSDPA 66 (392)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC---h----HHHHHHHHHHHHHHHhcchh
Confidence 457899999999999999999999999999998632 1 37889999999999999976
No 12
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.40 E-value=2.6e-07 Score=101.66 Aligned_cols=57 Identities=26% Similarity=0.398 Sum_probs=50.0
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|.-|+|...+|..+||+|||++++.+||||++.. . -|...|..|++||++|+|.+
T Consensus 4 d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~---~----~a~~~f~~i~~Ay~vL~d~~ 60 (365)
T PRK14285 4 DYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN---K----EAESIFKEATEAYEVLIDDN 60 (365)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC---H----HHHHHHHHHHHHHHHHcCcc
Confidence 347889999999999999999999999999998632 1 37789999999999999875
No 13
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=2.8e-07 Score=103.55 Aligned_cols=63 Identities=27% Similarity=0.376 Sum_probs=56.7
Q ss_pred cCCCCCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003048 785 LGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 851 (853)
Q Consensus 785 LW~~~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~de 851 (853)
+|+-.-|--|++..-+|+.+||+||||.|+.+||||+. ++++|-.|+.+|..|..||++|+|.
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~----dpd~K~~AE~~F~~i~~AyEVLsDp 68 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHT----DPDQKKAAEEKFQRIQRAYEVLSDP 68 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccC----ChhHHHHHHHHHHHHHHHHHHhcCh
Confidence 45445567889999999999999999999999999996 4789999999999999999999985
No 14
>PRK14299 chaperone protein DnaJ; Provisional
Probab=98.34 E-value=4e-07 Score=97.29 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=49.2
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|.-|+|..-+|+.+||+|||++++.+|||+++.. -|+..|..|++||++|++.+
T Consensus 5 d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------~~~~~f~~i~~Ay~~L~d~~ 60 (291)
T PRK14299 5 DYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSP--------GAEEKFKEINEAYTVLSDPE 60 (291)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh--------hHHHHHHHHHHHHHHhcCHH
Confidence 457889999999999999999999999999998631 26788999999999999864
No 15
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.33 E-value=4.3e-07 Score=100.19 Aligned_cols=57 Identities=25% Similarity=0.367 Sum_probs=49.9
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|.-|+|...++..+||+|||++++++|||+++... -|...|..|++||++|+|.+
T Consensus 5 d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~-------~a~~~f~~i~~Ay~vL~d~~ 61 (372)
T PRK14286 5 SYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNK-------ESEEKFKEATEAYEILRDPK 61 (372)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCch-------HHHHHHHHHHHHHHHhccHH
Confidence 3578899999999999999999999999999986321 37889999999999999865
No 16
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.32 E-value=4.9e-07 Score=100.33 Aligned_cols=58 Identities=28% Similarity=0.401 Sum_probs=51.2
Q ss_pred CCCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 788 DSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 788 ~~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
..-|.-|+|..-+++.+||+|||++++.+|||+++... .|+..|..|++||++|++.+
T Consensus 9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~-------~a~~~f~~i~~Ay~vL~d~~ 66 (389)
T PRK14295 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDA-------KAEERFKEISEAYDVLSDEK 66 (389)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCch-------hHHHHHHHHHHHHHHHCchh
Confidence 35689999999999999999999999999999986421 37889999999999999875
No 17
>PRK14278 chaperone protein DnaJ; Provisional
Probab=98.31 E-value=5e-07 Score=99.84 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=49.8
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|.-|+|...+++.+||+|||++++.+|||+++. . -|+..|..|++||++|++.+
T Consensus 4 d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~----~----~a~~~f~~i~~Ay~vL~d~~ 59 (378)
T PRK14278 4 DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD----E----EAQEKFKEISVAYEVLSDPE 59 (378)
T ss_pred CcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc----H----HHHHHHHHHHHHHHHhchhh
Confidence 35788999999999999999999999999999862 1 37889999999999999875
No 18
>PRK14277 chaperone protein DnaJ; Provisional
Probab=98.30 E-value=5.3e-07 Score=99.86 Aligned_cols=57 Identities=23% Similarity=0.327 Sum_probs=50.4
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|.-|+|...++..+||+||||+++.+|||+++... .|+..|..|++||++|++..
T Consensus 6 d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~-------~a~~~f~~i~~Ay~vL~d~~ 62 (386)
T PRK14277 6 DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDK-------EAEQKFKEINEAYEILSDPQ 62 (386)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCch-------HHHHHHHHHHHHHHHhCCHH
Confidence 4588999999999999999999999999999987321 37889999999999999864
No 19
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.30 E-value=5.8e-07 Score=99.18 Aligned_cols=56 Identities=25% Similarity=0.369 Sum_probs=50.1
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|+-|||...++..+||+|||++++.+|||+++. . -|...|..|++||++|+|..
T Consensus 6 d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~-------~a~~~f~~i~~Ay~~Lsd~~ 61 (378)
T PRK14283 6 DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-E-------GAEEKFKEISEAYAVLSDDE 61 (378)
T ss_pred ChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-c-------cHHHHHHHHHHHHHHhchhH
Confidence 45889999999999999999999999999999863 1 27889999999999999864
No 20
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=98.29 E-value=5.9e-07 Score=96.51 Aligned_cols=56 Identities=23% Similarity=0.358 Sum_probs=49.4
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|.-|+|...++.++||+|||++++.+|||+++.. .|+..|..|++||++|++..
T Consensus 5 d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~--------~~~~~f~~i~~Ay~~L~~~~ 60 (306)
T PRK10266 5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP--------DAEARFKEVAEAWEVLSDEQ 60 (306)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------cHHHHHHHHHHHHHHhhhHH
Confidence 357889999999999999999999999999997521 37899999999999999764
No 21
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.29 E-value=5.2e-07 Score=101.31 Aligned_cols=52 Identities=29% Similarity=0.445 Sum_probs=46.8
Q ss_pred CCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 790 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 790 ~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
-|+-|||+..+|+.+||+||||+++++||||++. ...|..|++||++|+|.+
T Consensus 30 ~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~-----------~e~F~~i~~AYevLsD~~ 81 (421)
T PTZ00037 30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-----------PEKFKEISRAYEVLSDPE 81 (421)
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch-----------HHHHHHHHHHHHHhccHH
Confidence 4789999999999999999999999999999741 268999999999999875
No 22
>PRK14287 chaperone protein DnaJ; Provisional
Probab=98.29 E-value=5.8e-07 Score=99.14 Aligned_cols=56 Identities=27% Similarity=0.363 Sum_probs=49.3
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|+-|+|..-++..+||+|||++++.+|||+++.. -|+..|..|++||++|+|.+
T Consensus 5 d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~--------~~~~~f~~i~~Ay~~L~d~~ 60 (371)
T PRK14287 5 DYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAP--------DAEDKFKEVKEAYDTLSDPQ 60 (371)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh--------hHHHHHHHHHHHHHHhCcHh
Confidence 347889999999999999999999999999998631 26789999999999999875
No 23
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.29 E-value=6e-07 Score=99.26 Aligned_cols=56 Identities=25% Similarity=0.367 Sum_probs=49.4
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|.-|+|...++..+||+|||++++.+|||+++.. -|...|..|++||++|++..
T Consensus 4 d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~--------~~~~~f~~i~~Ay~vLsd~~ 59 (382)
T PRK14291 4 DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNP--------EAEEKFKEINEAYQVLSDPE 59 (382)
T ss_pred CHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--------cHHHHHHHHHHHHHHhcCHH
Confidence 347889999999999999999999999999998641 26788999999999999865
No 24
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.29 E-value=6.1e-07 Score=98.67 Aligned_cols=57 Identities=23% Similarity=0.365 Sum_probs=50.0
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|.-|+|..-++..+||+||||+++.+|||+++.. + .|+..|..|++||++|++..
T Consensus 5 d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~----~~~~~f~~~~~Ay~vL~d~~ 61 (366)
T PRK14294 5 DYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD---K----EAEELFKEAAEAYEVLSDPK 61 (366)
T ss_pred ChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc---h----HHHHHHHHHHHHHHHhccHH
Confidence 457889999999999999999999999999998742 1 37789999999999999864
No 25
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=7.8e-07 Score=96.08 Aligned_cols=56 Identities=38% Similarity=0.503 Sum_probs=49.9
Q ss_pred CCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 790 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 790 ~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
-|.-|||+..+|+.+|++|||+-+|.|||||++. +|+ |..-|..|.+||++|.|++
T Consensus 7 yY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~---dP~----A~ekFq~L~eAy~VL~D~~ 62 (296)
T KOG0691|consen 7 YYDLLGISEDATDAEIKKAYRKKALQYHPDKNPG---DPQ----AAEKFQELSEAYEVLSDEE 62 (296)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCC---ChH----HHHHHHHHHHHHHHhcCHH
Confidence 3567899999999999999999999999999985 333 8999999999999999864
No 26
>PRK14276 chaperone protein DnaJ; Provisional
Probab=98.28 E-value=6.6e-07 Score=98.91 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=49.5
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|.-|+|...+|..+||+||||+++.+|||+++.. -|+..|..|++||++|++.+
T Consensus 5 d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~--------~a~~~f~~i~~Ay~vL~d~~ 60 (380)
T PRK14276 5 EYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEP--------GAEEKYKEVQEAYETLSDPQ 60 (380)
T ss_pred CHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------CHHHHHHHHHHHHHHhcCHh
Confidence 457889999999999999999999999999998732 26778999999999999865
No 27
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.28 E-value=6.7e-07 Score=98.29 Aligned_cols=57 Identities=25% Similarity=0.401 Sum_probs=49.9
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|.-|+|..-++..+||+||||+++.+|||+++.. . .|+..|..|++||++|++..
T Consensus 5 d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~---~----~a~~~f~~i~~Ay~~L~d~~ 61 (371)
T PRK10767 5 DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD---K----EAEEKFKEIKEAYEVLSDPQ 61 (371)
T ss_pred ChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc---H----HHHHHHHHHHHHHHHhcchh
Confidence 357889999999999999999999999999998632 1 37889999999999998864
No 28
>PRK14280 chaperone protein DnaJ; Provisional
Probab=98.28 E-value=6.8e-07 Score=98.67 Aligned_cols=56 Identities=21% Similarity=0.394 Sum_probs=49.6
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|.-|+|+..++..+||+|||++++.+|||+++.. -|+..|..|++||++|++.+
T Consensus 5 ~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~--------~a~~~f~~i~~Ay~vL~d~~ 60 (376)
T PRK14280 5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEE--------GADEKFKEISEAYEVLSDDQ 60 (376)
T ss_pred ChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--------cHHHHHHHHHHHHHHhccHh
Confidence 457889999999999999999999999999998632 26789999999999999864
No 29
>PRK14282 chaperone protein DnaJ; Provisional
Probab=98.27 E-value=7.7e-07 Score=97.95 Aligned_cols=58 Identities=19% Similarity=0.371 Sum_probs=50.6
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|+-|+|+..+++.+||+|||++++.+|||+++.. .-.|+..|..|++||++|+|.+
T Consensus 5 d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~------~~~a~~~f~~i~~Ay~vL~d~~ 62 (369)
T PRK14282 5 DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPEN------RKEAEQKFKEIQEAYEVLSDPQ 62 (369)
T ss_pred ChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccc------hhHHHHHHHHHHHHHHHhcChh
Confidence 457889999999999999999999999999998631 1137889999999999999875
No 30
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.25 E-value=8.8e-07 Score=98.49 Aligned_cols=57 Identities=26% Similarity=0.434 Sum_probs=49.8
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|.-|+|+.-++..+||+||||+++.+|||+++... .|...|..||+||++|++..
T Consensus 4 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~-------~a~~~f~~i~~Ay~vL~d~~ 60 (397)
T PRK14281 4 DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNK-------EAEEHFKEVNEAYEVLSNDD 60 (397)
T ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCch-------HHHHHHHHHHHHHHHhhhhh
Confidence 3478899999999999999999999999999986421 37789999999999999864
No 31
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.23 E-value=9.8e-07 Score=97.49 Aligned_cols=57 Identities=25% Similarity=0.395 Sum_probs=50.2
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|+-|+|..-++..+||+|||++++.+|||+++... .|+..|..|++||++|++.+
T Consensus 5 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~-------~a~~~f~~i~~Ay~vL~d~~ 61 (380)
T PRK14297 5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNK-------EAEEKFKEINEAYQVLSDPQ 61 (380)
T ss_pred ChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcH-------HHHHHHHHHHHHHHHhcCHh
Confidence 4578899999999999999999999999999986421 37889999999999999864
No 32
>PRK14301 chaperone protein DnaJ; Provisional
Probab=98.22 E-value=1.1e-06 Score=97.10 Aligned_cols=57 Identities=26% Similarity=0.391 Sum_probs=49.7
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|.-|+|..-++..+||+|||++++.+||||++... -|+..|..|++||++|++..
T Consensus 5 ~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~-------~a~~~f~~i~~Ay~vL~d~~ 61 (373)
T PRK14301 5 DYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNP-------EAEQKFKEAAEAYEVLRDAE 61 (373)
T ss_pred ChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCCh-------HHHHHHHHHHHHHHHhcchh
Confidence 4578899999999999999999999999999987421 26788999999999999865
No 33
>PRK14298 chaperone protein DnaJ; Provisional
Probab=98.22 E-value=9.8e-07 Score=97.61 Aligned_cols=56 Identities=29% Similarity=0.430 Sum_probs=49.5
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|.-|+|..-++..+||+|||++++.+|||+++.. -|+..|..|++||++|++.+
T Consensus 6 d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------~~~~~f~~i~~Ay~vL~d~~ 61 (377)
T PRK14298 6 DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEP--------DAEEKFKEISEAYAVLSDAE 61 (377)
T ss_pred CHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCCh--------hHHHHHHHHHHHHHHhcchH
Confidence 457889999999999999999999999999998631 26789999999999999875
No 34
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.20 E-value=1.4e-06 Score=96.22 Aligned_cols=57 Identities=25% Similarity=0.378 Sum_probs=50.0
Q ss_pred CCCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 788 DSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 788 ~~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
..-|+-|+|..-+++.+||+|||++++.+|||+++. . .|+..|..|++||++|++..
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~-------~~~~~f~~i~~Ay~~L~d~~ 59 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-K-------DAEKKFKEINAAYDVLKDEQ 59 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-c-------CHHHHHHHHHHHHHHhhhHh
Confidence 356899999999999999999999999999999863 1 26778999999999999864
No 35
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.2e-06 Score=98.58 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=50.3
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhh
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNS 850 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~d 850 (853)
|.|..|+|..-+++..||++|||++|.+||||++. + ..-|...|..|+.||++|++
T Consensus 9 c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd-~-----ieeat~~F~~i~aAYeVLSd 64 (508)
T KOG0717|consen 9 CYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPD-R-----IEEATQQFQLIQAAYEVLSD 64 (508)
T ss_pred HHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCc-c-----HHHHHHHHHHHHHHHHHhcC
Confidence 67888999999999999999999999999999863 2 23589999999999999987
No 36
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.7e-06 Score=90.81 Aligned_cols=60 Identities=27% Similarity=0.430 Sum_probs=55.0
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhcC
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEER 853 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~deer 853 (853)
+-|.-|||...+++..|++||+|..|.+|||+++ .+++--|...|+.|+.||.+|+|+++
T Consensus 15 d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~-----eed~~ea~~kFq~l~k~y~iLsDeek 74 (264)
T KOG0719|consen 15 DLYEVLGVERDATDKEIRKAYHKLALRLHPDKNH-----EEDKVEATEKFQQLQKAYQILSDEEK 74 (264)
T ss_pred CHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcch-----hhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5678899999999999999999999999999986 46777899999999999999999874
No 37
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.16 E-value=2e-06 Score=94.95 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=49.8
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|.-|+|...+++.+||+|||++++.+|||+++.. .|...|..|++||++|++..
T Consensus 4 d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~--------~a~~~f~~i~~Ay~vL~~~~ 59 (374)
T PRK14293 4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEP--------GAEDRFKEINRAYEVLSDPE 59 (374)
T ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--------CHHHHHHHHHHHHHHHhchH
Confidence 458899999999999999999999999999998632 26789999999999999865
No 38
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.14 E-value=2.5e-06 Score=93.89 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=50.8
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|.-|+|+..++..+||+|||++++.+|||+++.. ...|...|..|++||++|++..
T Consensus 4 d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~------~~~a~~~f~~i~~Ay~~L~d~~ 61 (365)
T PRK14290 4 DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN------KAEAEEKFKEISEAYEVLSDPQ 61 (365)
T ss_pred ChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc------hhHHHHHHHHHHHHHHHhcChh
Confidence 568899999999999999999999999999998631 1248899999999999999865
No 39
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=3.4e-06 Score=89.95 Aligned_cols=55 Identities=27% Similarity=0.372 Sum_probs=47.7
Q ss_pred CCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003048 790 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 851 (853)
Q Consensus 790 ~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~de 851 (853)
-|..|||...+|..+|||+||++++++||||.+.. | -+...|+.||.||++|+|-
T Consensus 33 LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~---P----~~~dkf~eIN~Ay~ILsD~ 87 (279)
T KOG0716|consen 33 LYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN---P----EATDKFKEINTAYAILSDP 87 (279)
T ss_pred HHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC---c----hhHHHHHHHHHHHHHhcCh
Confidence 46678899999999999999999999999999752 2 2568999999999999873
No 40
>PHA03102 Small T antigen; Reviewed
Probab=98.04 E-value=5.4e-06 Score=82.31 Aligned_cols=48 Identities=27% Similarity=0.389 Sum_probs=40.6
Q ss_pred ccCCCccC--ChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003048 793 PIPLTEVI--TSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 851 (853)
Q Consensus 793 ~Vgm~dL~--t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~de 851 (853)
-|||...+ |..+||+|||++++.+||||.+ + ...|..||+||.+|++.
T Consensus 10 vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg----~-------~e~~k~in~Ay~~L~d~ 59 (153)
T PHA03102 10 LLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGG----D-------EEKMKELNTLYKKFRES 59 (153)
T ss_pred HcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCc----h-------hHHHHHHHHHHHHHhhH
Confidence 35677777 9999999999999999999953 2 25899999999999875
No 41
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.04 E-value=4.2e-06 Score=92.64 Aligned_cols=57 Identities=26% Similarity=0.396 Sum_probs=50.2
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|.-|+|..-+|..+||+|||++++.+|||+++.. . .|...|..|++||++|++..
T Consensus 6 ~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~---~----~a~~~f~~i~~Ay~~L~d~~ 62 (386)
T PRK14289 6 DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD---K----EAEEKFKEAAEAYDVLSDPD 62 (386)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC---h----HHHHHHHHHHHHHHHhcCHH
Confidence 457889999999999999999999999999998742 1 37889999999999999864
No 42
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=5.3e-06 Score=79.77 Aligned_cols=57 Identities=26% Similarity=0.415 Sum_probs=49.5
Q ss_pred CCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 790 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 790 ~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.|.-|+|...++..+||++||++++.+|||+++... . .|...|..|++||.+|++..
T Consensus 8 ~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~---~---~a~~~f~~i~~Ay~vLsd~~ 64 (237)
T COG2214 8 YYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDP---K---VAEEKFKEINEAYEILSDPE 64 (237)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCch---h---HHHHHHHHHHHHHHHhhCHH
Confidence 466788999999999999999999999999998522 1 68899999999999998753
No 43
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=97.98 E-value=5.4e-06 Score=100.05 Aligned_cols=56 Identities=13% Similarity=0.069 Sum_probs=50.0
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
.-|.-|||...+++.+||+||||+++.+||||++.. .|...|..|++||.+|+|..
T Consensus 574 dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~--------~A~ekFq~I~EAYeVLSDp~ 629 (1136)
T PTZ00341 574 LFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN--------EGFHKFKKINEAYQILGDID 629 (1136)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc--------hHHHHHHHHHHHHHHhCCHH
Confidence 467899999999999999999999999999998731 26779999999999999875
No 44
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=97.95 E-value=1.3e-05 Score=80.36 Aligned_cols=59 Identities=17% Similarity=0.325 Sum_probs=48.6
Q ss_pred CcccCCCcc--CChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003048 791 WHPIPLTEV--ITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 851 (853)
Q Consensus 791 Wk~Vgm~dL--~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~de 851 (853)
|.-+||..- +++.+|+++||+++..+|||+..+ .+...+.+|...|..||+||.+|++-
T Consensus 4 f~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~--~~~~~~~~a~~~s~~iN~AY~~L~dp 64 (171)
T PRK05014 4 FTLFGLPARYDIDTQLLASRYQELQRQFHPDKFAN--ASERERLLAVQQAATINDAYQTLKHP 64 (171)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCC--CcHHHHHHHHHHHHHHHHHHHHHCCh
Confidence 445666664 788999999999999999999874 34456677889999999999999864
No 45
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=1e-05 Score=83.55 Aligned_cols=56 Identities=29% Similarity=0.538 Sum_probs=48.4
Q ss_pred CCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003048 790 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 851 (853)
Q Consensus 790 ~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~de 851 (853)
-|..|.|.+-++..+||+-||++.|.|||||++.+ ..-|+..|++|..||..|-+.
T Consensus 55 pfeVLqIdpev~~edikkryRklSilVHPDKN~Dd------~~rAqkAFdivkKA~k~l~n~ 110 (250)
T KOG1150|consen 55 PFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDD------AERAQKAFDIVKKAYKLLEND 110 (250)
T ss_pred hHHHHhcCCCCCHHHHHHHHHhhheeecCCCCccc------HHHHHHHHHHHHHHHHHHhCH
Confidence 36678899999999999999999999999999852 236999999999999988653
No 46
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=1.3e-05 Score=90.52 Aligned_cols=75 Identities=25% Similarity=0.316 Sum_probs=60.8
Q ss_pred CcccHHHHHhhcccccCCCCCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhh
Q 003048 770 KEGNLRALLSTLQYILGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFN 849 (853)
Q Consensus 770 Ke~NIRaLLstL~~VLW~~~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~ 849 (853)
--.|.+-+---|-.++=.-..|-.|||..-+++++|||.|||.+..|||||+.+. .|+.+|..|..||+++.
T Consensus 217 va~n~t~~adrl~re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~--------~A~Eafk~Lq~Afevig 288 (490)
T KOG0720|consen 217 VATNATSFADRLSRELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIP--------RAEEAFKKLQVAFEVIG 288 (490)
T ss_pred cccchhhHHHhhhhhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCCh--------hHHHHHHHHHHHHHHhc
Confidence 3456666555555555223568899999999999999999999999999999853 48999999999999998
Q ss_pred hhc
Q 003048 850 SEE 852 (853)
Q Consensus 850 dee 852 (853)
+.+
T Consensus 289 ~~~ 291 (490)
T KOG0720|consen 289 DSV 291 (490)
T ss_pred chh
Confidence 753
No 47
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=1.2e-05 Score=86.54 Aligned_cols=63 Identities=24% Similarity=0.390 Sum_probs=56.6
Q ss_pred cccCCCCCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhcC
Q 003048 783 YILGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEER 853 (853)
Q Consensus 783 ~VLW~~~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~deer 853 (853)
.++|....|+.||+..-+|..+||+||++++..+|||-+... .|...|..|.+||++|.++++
T Consensus 38 ~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~--------~a~~kF~eI~~AYEiLsd~eK 100 (288)
T KOG0715|consen 38 RIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK--------EASKKFKEISEAYEILSDEEK 100 (288)
T ss_pred ccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc--------chhhHHHHHHHHHHHhcCHHH
Confidence 356766788999999999999999999999999999999753 589999999999999999874
No 48
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=97.89 E-value=0.0024 Score=69.94 Aligned_cols=37 Identities=19% Similarity=0.113 Sum_probs=17.7
Q ss_pred HhhcccccCCCCCCcccCCCccCChhHHHHHHHHhhhhc
Q 003048 778 LSTLQYILGPDSGWHPIPLTEVITSAAVKKAYRKATLCV 816 (853)
Q Consensus 778 LstL~~VLW~~~~Wk~Vgm~dL~t~~~VKKAYRKA~L~v 816 (853)
.|.|+.-|-|+-. -+++..+--+..|=-+-..|+..+
T Consensus 327 ~C~l~ikL~pdGt--l~~~~~~~Gd~~lCqAalsAvAk~ 363 (387)
T COG3064 327 TCRLRIKLAPDGT--LLDIKPEGGDPALCQAALSAVAKT 363 (387)
T ss_pred eeEEEEEEcCCcc--eeeccccCCChHHHHHHHHHHHHh
Confidence 4667766665321 233344444444444444444443
No 49
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=97.82 E-value=2.1e-05 Score=75.11 Aligned_cols=51 Identities=18% Similarity=0.280 Sum_probs=43.7
Q ss_pred CCCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhh
Q 003048 788 DSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFN 849 (853)
Q Consensus 788 ~~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~ 849 (853)
..-|+-|||.+.++..+|+++||++++.+|||+. | ++ ..|..|++||++|.
T Consensus 65 ~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg---G-s~-------~~~~kIneAyevL~ 115 (116)
T PTZ00100 65 SEAYKILNISPTASKERIREAHKQLMLRNHPDNG---G-ST-------YIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC---C-CH-------HHHHHHHHHHHHHh
Confidence 3467889999999999999999999999999983 2 22 47889999999985
No 50
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=2.5e-05 Score=81.39 Aligned_cols=61 Identities=21% Similarity=0.349 Sum_probs=50.5
Q ss_pred cccCCCCCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 783 YILGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 783 ~VLW~~~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
..+| .-+.-|||++.++..+|||+||++++++||||++..+. -+.-|..|+.||..|.|..
T Consensus 96 ~~~f--DPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~-------~e~~~~~I~KAY~aLTD~~ 156 (230)
T KOG0721|consen 96 RQKF--DPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEG-------DEEFFEAIAKAYQALTDKK 156 (230)
T ss_pred hhcC--CcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcch-------hHHHHHHHHHHHHHhcchh
Confidence 3455 34778999999999999999999999999999975322 3577999999999998864
No 51
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=97.77 E-value=4e-05 Score=77.41 Aligned_cols=61 Identities=21% Similarity=0.322 Sum_probs=49.5
Q ss_pred CCCcccCCCc--cCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003048 789 SGWHPIPLTE--VITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 851 (853)
Q Consensus 789 ~~Wk~Vgm~d--L~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~de 851 (853)
..|.-+||.. -+++.+|+++||++...+|||+.++. +...+.+|...|..||+||.+|++-
T Consensus 7 dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~--~~~e~~~a~~~s~~iN~AY~tL~~p 69 (176)
T PRK03578 7 DHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAA--GDAEKRVAMQWATRANEAYQTLRDP 69 (176)
T ss_pred CHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--CHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 3455566666 47889999999999999999999753 4455677888899999999999864
No 52
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=97.76 E-value=4.6e-05 Score=76.86 Aligned_cols=59 Identities=20% Similarity=0.324 Sum_probs=47.9
Q ss_pred CcccCCCcc--CChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003048 791 WHPIPLTEV--ITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 851 (853)
Q Consensus 791 Wk~Vgm~dL--~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~de 851 (853)
|.-+||..- +++.+|+++||++...+|||+..+ .+...+.+|...|..||+||.+|++.
T Consensus 7 F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~--~~~~e~~~a~~~s~~IN~AY~~L~~p 67 (173)
T PRK00294 7 FALFDLQPSFRLDLDQLATRYRELAREVHPDRFAD--APEREQRLALERSASLNEAYQTLKSP 67 (173)
T ss_pred hhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--CcHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 444555555 778999999999999999999974 34445667888999999999999874
No 53
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=97.76 E-value=3.7e-05 Score=76.96 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=46.5
Q ss_pred CcccCCCcc--CChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003048 791 WHPIPLTEV--ITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 851 (853)
Q Consensus 791 Wk~Vgm~dL--~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~de 851 (853)
|.-+||..- ++..+|+++||++.+.+||||..+ ...+..+...|..||+||.+|++-
T Consensus 5 f~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~----~~~k~~~~~~s~~in~AY~~L~dp 63 (166)
T PRK01356 5 FQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKT----LQEKEQNLIIASELNNAYSTLKDA 63 (166)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHHHHHHHhCCH
Confidence 455677765 788999999999999999999752 334556667899999999999863
No 54
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=97.65 E-value=7.2e-05 Score=74.17 Aligned_cols=50 Identities=20% Similarity=0.326 Sum_probs=42.5
Q ss_pred CChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003048 800 ITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 851 (853)
Q Consensus 800 ~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~de 851 (853)
|++..|+++||++...+|||+.++. +...+.+|...|..||+||.+|++.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~--~~~~~~~a~~~s~~iN~AY~~L~~p 52 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASG--SAQEQLAAVQQSTTLNQAYQTLKDP 52 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCC--ChhhhHHHHHHHHHHHHHHHHhCCh
Confidence 6788999999999999999998753 3344567889999999999999874
No 55
>PHA02624 large T antigen; Provisional
Probab=97.29 E-value=0.00019 Score=84.32 Aligned_cols=50 Identities=22% Similarity=0.281 Sum_probs=42.2
Q ss_pred CcccCCCccC--ChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003048 791 WHPIPLTEVI--TSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 851 (853)
Q Consensus 791 Wk~Vgm~dL~--t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~de 851 (853)
|.-|||...+ +..+||++||++++.+||||.. + ...|..||.||++|.+.
T Consensus 14 yelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgG----d-------eekfk~Ln~AYevL~d~ 65 (647)
T PHA02624 14 MDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGG----D-------EEKMKRLNSLYKKLQEG 65 (647)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC----c-------HHHHHHHHHHHHHHhcH
Confidence 4556777777 9999999999999999999942 2 36899999999999874
No 56
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=97.29 E-value=0.00028 Score=79.90 Aligned_cols=84 Identities=17% Similarity=0.249 Sum_probs=65.1
Q ss_pred Hhhhhc-C-CcccHHHHHhhcccccCCCCCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHH
Q 003048 763 VKRWSS-G-KEGNLRALLSTLQYILGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDL 840 (853)
Q Consensus 763 I~~W~~-G-Ke~NIRaLLstL~~VLW~~~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~ 840 (853)
|-.|.- | =--|||. |+-+-.=+| .-|.-|||+.-.+..+||++||++.+++||||++. ...+.+..-+..+..
T Consensus 74 ivgWl~i~~L~~~I~~-~k~~~~~~f--DPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~--mvn~~rse~Ee~y~~ 148 (610)
T COG5407 74 IVGWLVISYLISNIRT-LKIEYRRGF--DPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPP--MVNELRSEYEEKYKT 148 (610)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHcCC--ChHHhhcccCCCcHHHHHHHHHhheeecChhhcCC--CChhHHHHHHHHHHH
Confidence 556763 1 1113444 344444566 34777999999999999999999999999999984 677888888999999
Q ss_pred HHHHHHHhhhh
Q 003048 841 LKEAWNKFNSE 851 (853)
Q Consensus 841 LneAwe~F~de 851 (853)
|+.||..|.|+
T Consensus 149 ItkAY~~lTd~ 159 (610)
T COG5407 149 ITKAYGLLTDK 159 (610)
T ss_pred HHHHHHhhhhH
Confidence 99999999875
No 57
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00025 Score=78.26 Aligned_cols=38 Identities=29% Similarity=0.386 Sum_probs=33.6
Q ss_pred CCCCCCcccCCCccCChhHHHHHHHHhhhhcCCCcccc
Q 003048 786 GPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQ 823 (853)
Q Consensus 786 W~~~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~ 823 (853)
|+-.-|.-|+|+..+|+.+|||||||+++++||||++.
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~ 39 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD 39 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc
Confidence 44455678899999999999999999999999999984
No 58
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00051 Score=77.49 Aligned_cols=93 Identities=25% Similarity=0.332 Sum_probs=69.3
Q ss_pred HHhhhhhHHHHhhhh----cCCcccHHHHHhhcccccC---CCCCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCC
Q 003048 753 NRLAETLDADVKRWS----SGKEGNLRALLSTLQYILG---PDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRG 825 (853)
Q Consensus 753 ~~l~d~vd~kI~~W~----~GKe~NIRaLLstL~~VLW---~~~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~g 825 (853)
+.+.+....-|.... .-+.-+||.+|--.+.-|- .-.-|+-||+..+++...||++|||..|.+|||++..
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ag-- 408 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAG-- 408 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcc--
Confidence 334444444444333 2344568888877766553 1234678999999999999999999999999999974
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhhh
Q 003048 826 ASIQQKYICEKVFDLLKEAWNKFNSE 851 (853)
Q Consensus 826 as~eqk~iAe~vF~~LneAwe~F~de 851 (853)
+ ++-|+..|..+-+||.+++|-
T Consensus 409 -s---q~eaE~kFkevgeAy~il~d~ 430 (486)
T KOG0550|consen 409 -S---QKEAEAKFKEVGEAYTILSDP 430 (486)
T ss_pred -h---hHHHHHHHHHHHHHHHHhcCH
Confidence 2 678999999999999999863
No 59
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=97.18 E-value=0.05 Score=61.57 Aligned_cols=12 Identities=8% Similarity=0.099 Sum_probs=8.0
Q ss_pred Hhhhhhhhhccc
Q 003048 652 VDRIFSEKFSAS 663 (853)
Q Consensus 652 ~~~~~~~~f~~~ 663 (853)
.+..+.|+|+|.
T Consensus 255 ~e~~~dd~~~gl 266 (387)
T PRK09510 255 AAAEVDDLFGGL 266 (387)
T ss_pred HHHHHHHHhhcc
Confidence 355678888763
No 60
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=97.12 E-value=0.057 Score=60.17 Aligned_cols=41 Identities=22% Similarity=0.156 Sum_probs=18.9
Q ss_pred HHhhcccccCCCCCCcccCCCccCChhHHHHHHHHhhhhcCCC
Q 003048 777 LLSTLQYILGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPD 819 (853)
Q Consensus 777 LLstL~~VLW~~~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPD 819 (853)
+-+.|+..|-|+ | ..++|...-.+..+-.+-..||..+-|-
T Consensus 285 ~~v~V~I~L~pd-G-~V~~I~~sSGd~~lD~AAl~AV~ka~p~ 325 (346)
T TIGR02794 285 KTCRLRIRLAPD-G-TLLSVTKSSGDPALCQAALAAVAKAAKL 325 (346)
T ss_pred CEEEEEEEECCC-C-CEEeeccCCCCHHHHHHHHHHHHHhCCC
Confidence 345555555442 2 2333332222344555555666555544
No 61
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00055 Score=69.50 Aligned_cols=56 Identities=29% Similarity=0.466 Sum_probs=45.2
Q ss_pred CcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 791 WHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 791 Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
++-|+|..-+++.+||+||+++++.+||||++. . +..|...|..|++||+++++..
T Consensus 6 ~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~-----~-~~~~~~~~~~~~ea~~~ls~~~ 61 (306)
T KOG0714|consen 6 YKILGIARSASEEDIKKAYRKLALKYHPDKNPS-----P-KEVAEAKFKEIAEAYEVLSDPK 61 (306)
T ss_pred HHHhCccccccHHHHHHHHHHHHHhhCCCCCCC-----c-hhhHHHHHhhhhccccccCCHH
Confidence 455677777777799999999999999999653 2 4456669999999999988653
No 62
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.00046 Score=73.77 Aligned_cols=55 Identities=20% Similarity=0.388 Sum_probs=48.4
Q ss_pred CCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 790 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 790 ~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
-|..||++.-.+..+|++|||++++.+|||+++.. + +...|..|..||+++++++
T Consensus 35 CYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~----e----~k~~F~~iAtayeilkd~e 89 (329)
T KOG0722|consen 35 CYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDP----E----SKKLFVKIATAYEILKDNE 89 (329)
T ss_pred HHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCc----h----hhhhhhhhhcccccccchh
Confidence 47789999999999999999999999999999842 2 3489999999999998865
No 63
>PRK14284 chaperone protein DnaJ; Provisional
Probab=96.82 E-value=0.00092 Score=74.67 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=31.6
Q ss_pred CCcccCCCccCChhHHHHHHHHhhhhcCCCcccc
Q 003048 790 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQ 823 (853)
Q Consensus 790 ~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~ 823 (853)
-|.-|+|..-+++.+||+|||++++.+|||+++.
T Consensus 3 ~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~ 36 (391)
T PRK14284 3 YYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPG 36 (391)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 4788999999999999999999999999999874
No 64
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=96.55 E-value=0.0022 Score=70.47 Aligned_cols=32 Identities=28% Similarity=0.481 Sum_probs=30.3
Q ss_pred CcccCCCccCChhHHHHHHHHhhhhcCCCccc
Q 003048 791 WHPIPLTEVITSAAVKKAYRKATLCVHPDKLQ 822 (853)
Q Consensus 791 Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~ 822 (853)
|+-|+|...++..+||+|||++++.+|||+++
T Consensus 3 y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~ 34 (354)
T TIGR02349 3 YEILGVSKDASEEEIKKAYRKLAKKYHPDRNK 34 (354)
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Confidence 67889999999999999999999999999986
No 65
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=96.49 E-value=0.0057 Score=62.04 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=46.3
Q ss_pred cCCCcc--CChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhh
Q 003048 794 IPLTEV--ITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNS 850 (853)
Q Consensus 794 Vgm~dL--~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~d 850 (853)
+||..- +++..+++.|+.+...+|||+..+ .+...+.+|...=..||+||.+|++
T Consensus 8 f~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~--~~~~eq~~a~~~ss~iN~AY~tLkd 64 (173)
T PRK01773 8 FDLPVDFQLDNALLSERYLALQKSLHPDNFAN--SSAQEQRLAMQKSAEVNDALQILKD 64 (173)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHhCcCcccC--CCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 344444 889999999999999999999985 3566777888889999999999986
No 66
>PRK14292 chaperone protein DnaJ; Provisional
Probab=96.39 E-value=0.0027 Score=70.39 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=30.9
Q ss_pred CCcccCCCccCChhHHHHHHHHhhhhcCCCccc
Q 003048 790 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQ 822 (853)
Q Consensus 790 ~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~ 822 (853)
-|+-|+|...+|+.+||+|||++++.+|||+++
T Consensus 4 ~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~ 36 (371)
T PRK14292 4 YYELLGVSRTASADEIKSAYRKLALKYHPDRNK 36 (371)
T ss_pred hHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCC
Confidence 477899999999999999999999999999986
No 67
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.34 E-value=0.0037 Score=69.69 Aligned_cols=61 Identities=25% Similarity=0.291 Sum_probs=55.8
Q ss_pred CCCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhhc
Q 003048 788 DSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSEE 852 (853)
Q Consensus 788 ~~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~dee 852 (853)
-..|+-||+-.-++--.|-|||||++.++|||--+ +.+.+-.|++.|+-|.-|-++|+++|
T Consensus 394 RDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFq----dEeEKKkAEKKFIDIAAAKEVLsd~E 454 (504)
T KOG0624|consen 394 RDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQ----DEEEKKKAEKKFIDIAAAKEVLSDPE 454 (504)
T ss_pred chHHHHhhhcccccHHHHHHHHHHHHHhcCCcccc----CHHHHHHHHHhhhhHHHHHHhhcCHH
Confidence 45789999999999999999999999999999986 35778899999999999999999987
No 68
>PTZ00121 MAEBL; Provisional
Probab=96.04 E-value=1.6 Score=56.32 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 003048 721 LERHRRTAERAAKALAEKN 739 (853)
Q Consensus 721 ~~r~~r~~er~a~al~ek~ 739 (853)
..-|+|..+.+.++-..+.
T Consensus 1285 k~Ee~r~a~~~kk~ee~kk 1303 (2084)
T PTZ00121 1285 KAEEKKKADEAKKAEEKKK 1303 (2084)
T ss_pred HHHHHHHHHHHhhHHHHHH
Confidence 3345565555544443333
No 69
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.01 Score=72.78 Aligned_cols=39 Identities=26% Similarity=0.489 Sum_probs=35.2
Q ss_pred hhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhh
Q 003048 802 SAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNS 850 (853)
Q Consensus 802 ~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~d 850 (853)
+.+|+++|+|++.++||||++- ....|..+|.||+.|+.
T Consensus 1299 ~~KirrqY~kLA~kYHPDKNPE----------GRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1299 PAKIRRQYYKLAAKYHPDKNPE----------GREMFERVNKAYELLSS 1337 (2235)
T ss_pred HHHHHHHHHHHHHHhCCCCCch----------HHHHHHHHHHHHHHHHH
Confidence 5799999999999999999984 36899999999999874
No 70
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=95.12 E-value=1.9 Score=48.38 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003048 519 ERVKRQRELEIERLRRI 535 (853)
Q Consensus 519 e~~~~e~e~eke~~r~~ 535 (853)
+.+...+..+..+++.+
T Consensus 78 ~~~~~~~~~eq~r~~~l 94 (346)
T TIGR02794 78 EEAEKQRAAEQARQKEL 94 (346)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555554
No 71
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=95.06 E-value=2.3 Score=47.51 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=10.0
Q ss_pred hhhhhhhhcc-ccCCCCCCC
Q 003048 653 DRIFSEKFSA-SSRNSAVRP 671 (853)
Q Consensus 653 ~~~~~~~f~~-~~~~~~~~~ 671 (853)
...+.|+|++ +.+.++|+.
T Consensus 258 ~aaldD~fg~ls~g~~a~~~ 277 (387)
T COG3064 258 AAALDDIFGGLSSGKNAPKT 277 (387)
T ss_pred HhhHHHHhccccccCCCCCc
Confidence 3356777866 334443443
No 72
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.042 Score=52.54 Aligned_cols=47 Identities=26% Similarity=0.381 Sum_probs=39.5
Q ss_pred ccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhh
Q 003048 793 PIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNS 850 (853)
Q Consensus 793 ~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~d 850 (853)
-|+|++.++.+.||.++||+.+.-|||+.. |+ |||. .||+|++.|..
T Consensus 61 IL~v~~s~~k~KikeaHrriM~~NHPD~GG----SP---YlAs----KINEAKdlLe~ 107 (112)
T KOG0723|consen 61 ILGVTPSLDKDKIKEAHRRIMLANHPDRGG----SP---YLAS----KINEAKDLLEG 107 (112)
T ss_pred HhCCCccccHHHHHHHHHHHHHcCCCcCCC----CH---HHHH----HHHHHHHHHhc
Confidence 378889999999999999999999999965 33 6775 47999998753
No 73
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=94.66 E-value=0.043 Score=66.40 Aligned_cols=34 Identities=24% Similarity=0.364 Sum_probs=31.1
Q ss_pred CCcccCCCccCChhHHHHHHHHhhhhcCCCcccc
Q 003048 790 GWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQ 823 (853)
Q Consensus 790 ~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~ 823 (853)
.|.-|||...++..+||++||++++.+|||+++.
T Consensus 4 YYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~ 37 (871)
T TIGR03835 4 YYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA 37 (871)
T ss_pred hhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC
Confidence 4678899999999999999999999999999864
No 74
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.065 Score=58.33 Aligned_cols=47 Identities=26% Similarity=0.441 Sum_probs=39.6
Q ss_pred CChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhhh
Q 003048 800 ITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNSE 851 (853)
Q Consensus 800 ~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~de 851 (853)
++|.+|.++.+|-++.+||||... |++. -|...|..|+.||++|.|-
T Consensus 58 a~~~qi~kah~kkv~kyHPDk~aa-~g~~----~~d~fFk~iqkA~evL~D~ 104 (379)
T COG5269 58 AIPPQILKAHKKKVYKYHPDKTAA-GGNK----GCDEFFKLIQKAREVLGDR 104 (379)
T ss_pred CCcHHHHHHHHHHHHHhCccchhc-cCCC----CcHHHHHHHHHHHHHhccH
Confidence 357899999999999999999854 4343 3789999999999999874
No 75
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.64 E-value=0.098 Score=52.68 Aligned_cols=60 Identities=23% Similarity=0.317 Sum_probs=54.0
Q ss_pred CCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHh
Q 003048 789 SGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKF 848 (853)
Q Consensus 789 ~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F 848 (853)
..+..+++..-.+...|+++|++++-..|||++...|..++...++...+..|+.||..+
T Consensus 114 ~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 114 DALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 346777888888899999999999999999999998888999999999999999999864
No 76
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.83 E-value=2e+02 Score=36.43 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=8.4
Q ss_pred cchhhhhHHHHHH
Q 003048 511 LTSKDKDAERVKR 523 (853)
Q Consensus 511 ~~~~~~~~e~~~~ 523 (853)
.+-+||..+.++|
T Consensus 312 ~TFEDKrkeNy~k 324 (1118)
T KOG1029|consen 312 VTFEDKRKENYEK 324 (1118)
T ss_pred cchhhhhHHhHhh
Confidence 4557887766554
No 77
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=63.09 E-value=1.3e+02 Score=38.00 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=10.8
Q ss_pred HHHhhhhcCCCcccc
Q 003048 809 YRKATLCVHPDKLQQ 823 (853)
Q Consensus 809 YRKA~L~vHPDKl~~ 823 (853)
|-.--+.+||||-|+
T Consensus 1180 ~I~RQm~l~~~kpP~ 1194 (1259)
T KOG0163|consen 1180 WIARQMELHPDKPPI 1194 (1259)
T ss_pred HHHhhheecCCCCCe
Confidence 334457899999875
No 78
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=59.87 E-value=16 Score=39.86 Aligned_cols=65 Identities=23% Similarity=0.301 Sum_probs=48.4
Q ss_pred ccHHHHHhhccc---ccCCCCCCcccCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHH
Q 003048 772 GNLRALLSTLQY---ILGPDSGWHPIPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWN 846 (853)
Q Consensus 772 ~NIRaLLstL~~---VLW~~~~Wk~Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe 846 (853)
|=||.-|-+||. ++- --|.-||+...++.+.|.-+|.+++-.||||-... .++ ..-|..|-+||-
T Consensus 30 giirnrll~~~kske~~~--e~fril~v~e~~~adevr~af~~lakq~hpdsgs~-~ad-------aa~f~qideafr 97 (342)
T KOG0568|consen 30 GIIRNRLLHLHKSKEKIM--ECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE-EAD-------AARFIQIDEAFR 97 (342)
T ss_pred hhHHHHHHHHhhhHHHHH--HHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc-ccc-------HHHHHHHHHHHH
Confidence 347766666664 221 13677899999999999999999999999998764 222 356888888876
No 79
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=58.79 E-value=20 Score=34.55 Aligned_cols=48 Identities=25% Similarity=0.419 Sum_probs=39.2
Q ss_pred CChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhh
Q 003048 800 ITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNS 850 (853)
Q Consensus 800 ~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~d 850 (853)
++..+++.+.|...+.||||-..+ .++++.+=+.-+..||.-.+.+..
T Consensus 6 ~~~~~l~~aLr~Fy~~VHPDlF~~---~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 6 LSSPDLRSALRPFYFAVHPDLFGQ---HPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhHHHHHHHHHHHHHhCCccccc---ChHHHHhhHHHHHHHHHHHHHHhc
Confidence 456789999999999999999875 467888888889998887766643
No 80
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=55.29 E-value=2.9e+02 Score=34.47 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=18.7
Q ss_pred HHHHhhhhhHHHHhhhhcCCcccHHHHH
Q 003048 751 ERNRLAETLDADVKRWSSGKEGNLRALL 778 (853)
Q Consensus 751 er~~l~d~vd~kI~~W~~GKe~NIRaLL 778 (853)
.++.+.+.|-..+..|..|..+-|-.|+
T Consensus 648 ve~~~d~alm~ql~pl~hgn~ns~~~ii 675 (811)
T KOG4364|consen 648 VEQICDRALMVQLFPLSHGNENSINDII 675 (811)
T ss_pred hHHHHHHHHHHHHhhhhcccccchHHHH
Confidence 4556666677777778877776665554
No 81
>PF08628 Nexin_C: Sorting nexin C terminal; InterPro: IPR013937 This region is found at the C terminus of proteins belonging to the nexin family. It is found on proteins which also contain IPR001683 from INTERPRO.
Probab=54.99 E-value=19 Score=33.76 Aligned_cols=72 Identities=19% Similarity=0.267 Sum_probs=46.8
Q ss_pred CcccHHHHHhhcccccCCCCCCcccCCCccCChhHHHHHH---HHhhhhcCCCccccCCCChhHHHHHHHHHHHHHH
Q 003048 770 KEGNLRALLSTLQYILGPDSGWHPIPLTEVITSAAVKKAY---RKATLCVHPDKLQQRGASIQQKYICEKVFDLLKE 843 (853)
Q Consensus 770 Ke~NIRaLLstL~~VLW~~~~Wk~Vgm~dL~t~~~VKKAY---RKA~L~vHPDKl~~~gas~eqk~iAe~vF~~Lne 843 (853)
.+.++=.+|..|+..|||+-.|.+.+. .-|+.+-...+ +..++..=||-+..-=+......-+..||..|+.
T Consensus 36 se~~v~~~i~~l~~~lwP~g~~~~~~~--~Rt~~ek~~tr~~A~~~L~~~~P~~l~~vvG~~~~~~g~~~if~~LQ~ 110 (113)
T PF08628_consen 36 SEEQVARYIQLLRESLWPNGKLAEPPP--PRTEEEKLRTRQEARELLLSLLPDTLKKVVGSENSRRGARRIFEMLQN 110 (113)
T ss_pred CHHHHHHHHHHHHHhhCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHhcHHHHHHccCHHHHHHHHHHHHHHHCC
Confidence 456788999999999999876665544 22333222222 2344677799887532233456678888988864
No 82
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=53.94 E-value=2.7e+02 Score=35.36 Aligned_cols=10 Identities=40% Similarity=0.418 Sum_probs=7.5
Q ss_pred HHHHhhcccc
Q 003048 775 RALLSTLQYI 784 (853)
Q Consensus 775 RaLLstL~~V 784 (853)
||-||.+.+-
T Consensus 1119 RAp~sv~~~~ 1128 (1259)
T KOG0163|consen 1119 RAPLSVMEAA 1128 (1259)
T ss_pred ccchhHHHHH
Confidence 8888877665
No 83
>PLN03086 PRLI-interacting factor K; Provisional
Probab=52.82 E-value=45 Score=40.34 Aligned_cols=7 Identities=43% Similarity=0.534 Sum_probs=3.6
Q ss_pred ccHHHHH
Q 003048 772 GNLRALL 778 (853)
Q Consensus 772 ~NIRaLL 778 (853)
.|.++||
T Consensus 200 ~npKavL 206 (567)
T PLN03086 200 PNHKAVL 206 (567)
T ss_pred ccHHHHH
Confidence 3555555
No 84
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=52.79 E-value=3.8e+02 Score=32.25 Aligned_cols=9 Identities=11% Similarity=0.541 Sum_probs=3.5
Q ss_pred cccccccch
Q 003048 367 FGLAHGNLK 375 (853)
Q Consensus 367 ~e~~~g~~~ 375 (853)
+|-+..++.
T Consensus 96 ygY~~~~a~ 104 (489)
T PF05262_consen 96 YGYSDEDAE 104 (489)
T ss_pred cCCChhhHH
Confidence 333333333
No 85
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.92 E-value=1.4e+02 Score=37.76 Aligned_cols=6 Identities=33% Similarity=0.639 Sum_probs=2.3
Q ss_pred hhHHHH
Q 003048 802 SAAVKK 807 (853)
Q Consensus 802 ~~~VKK 807 (853)
+..|++
T Consensus 650 ~eavq~ 655 (1118)
T KOG1029|consen 650 TEAVQR 655 (1118)
T ss_pred HHHHhh
Confidence 334433
No 86
>PRK12472 hypothetical protein; Provisional
Probab=51.47 E-value=4.9e+02 Score=31.49 Aligned_cols=45 Identities=31% Similarity=0.297 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHH
Q 003048 580 TAEFRQRALAEARERLEKACAEAKEKSLAEKTSMEARLRAERAAVE 625 (853)
Q Consensus 580 ~~EArera~~eAreraekaa~e~~e~~~~eka~~EAr~raEraA~e 625 (853)
+-+|+.||+ +++.+++..++++..+....++.+++++.+--++.+
T Consensus 253 ~d~~~~~a~-~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~ 297 (508)
T PRK12472 253 TDEAKARAE-ERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKE 297 (508)
T ss_pred cchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445555555 366666666666666655556665655444333333
No 87
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=46.10 E-value=1.7e+02 Score=30.05 Aligned_cols=22 Identities=5% Similarity=0.114 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhhhhHHh
Q 003048 627 ATVEARERAAEKAMAERGAFDA 648 (853)
Q Consensus 627 A~aEAr~ra~e~a~~eraa~ea 648 (853)
..+|+|.++..+|..++++.++
T Consensus 81 I~~e~~~~~~a~~~~~~~~~ea 102 (155)
T PRK06569 81 LKKEKIDSLESEFLIKKKNLEQ 102 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555444444444
No 88
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=45.91 E-value=1e+02 Score=38.84 Aligned_cols=9 Identities=33% Similarity=0.493 Sum_probs=4.7
Q ss_pred cccHHHHHh
Q 003048 771 EGNLRALLS 779 (853)
Q Consensus 771 e~NIRaLLs 779 (853)
..|||.-+|
T Consensus 470 ~~~lRSPIc 478 (1064)
T KOG1144|consen 470 TENLRSPIC 478 (1064)
T ss_pred chhcCCceE
Confidence 446665443
No 89
>PRK07735 NADH dehydrogenase subunit C; Validated
Probab=45.01 E-value=6e+02 Score=30.21 Aligned_cols=7 Identities=14% Similarity=0.482 Sum_probs=2.8
Q ss_pred CCCCCCc
Q 003048 786 GPDSGWH 792 (853)
Q Consensus 786 W~~~~Wk 792 (853)
||+.+|-
T Consensus 381 ~P~AnW~ 387 (430)
T PRK07735 381 WKGANWP 387 (430)
T ss_pred hccCChH
Confidence 3344443
No 90
>PRK12472 hypothetical protein; Provisional
Probab=42.64 E-value=3.4e+02 Score=32.74 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=5.5
Q ss_pred CCcccHHHHHhhc
Q 003048 769 GKEGNLRALLSTL 781 (853)
Q Consensus 769 GKe~NIRaLLstL 781 (853)
|+..++=+|||+-
T Consensus 435 ~~~tefv~~~~~~ 447 (508)
T PRK12472 435 NYRTEFVAVLSDQ 447 (508)
T ss_pred CCcceEEEEecCC
Confidence 3333444455443
No 91
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=40.28 E-value=1.8e+02 Score=36.82 Aligned_cols=7 Identities=29% Similarity=0.126 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 003048 629 VEARERA 635 (853)
Q Consensus 629 aEAr~ra 635 (853)
+||+.++
T Consensus 294 aea~l~~ 300 (1064)
T KOG1144|consen 294 AEAFLKQ 300 (1064)
T ss_pred HHHHHHH
Confidence 3344333
No 92
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=39.35 E-value=42 Score=34.07 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=36.9
Q ss_pred hHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhh
Q 003048 803 AAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNS 850 (853)
Q Consensus 803 ~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~d 850 (853)
...+..|+.+...+|||.... ++......+-..|..+|.||.+|++
T Consensus 18 ~~l~~~~~~~~~~~~~dr~~~--~~~~~~~~~l~~~~~~~~a~~tLk~ 63 (174)
T COG1076 18 DALKLQYRELQRAYHPDRFGK--ASEAEQRKALQQSAEVNPAYQTLKD 63 (174)
T ss_pred hHhhhhHHHHHHhhCcccccc--cchHHHHHHHHHHHHhcchHHHHHH
Confidence 467889999999999999875 3344455566789999999999875
No 93
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=37.45 E-value=5.7e+02 Score=27.75 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=9.1
Q ss_pred HhhhhhHHHHhhhhcCCcccHHH
Q 003048 754 RLAETLDADVKRWSSGKEGNLRA 776 (853)
Q Consensus 754 ~l~d~vd~kI~~W~~GKe~NIRa 776 (853)
.-.|.|+..=..--..|+.-||.
T Consensus 208 T~~D~~h~en~~~g~~ky~tl~~ 230 (246)
T PF00769_consen 208 TQLDIIHAENVRAGRDKYKTLRQ 230 (246)
T ss_dssp -HHHHHHHHHHHTT--HHHHHHH
T ss_pred chhHHHHHHHHHhchhHHHHHHH
Confidence 33455554432222345555553
No 94
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=34.27 E-value=3.8e+02 Score=30.29 Aligned_cols=22 Identities=55% Similarity=0.558 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003048 613 MEARLRAERAAVERATVEARERAAEK 638 (853)
Q Consensus 613 ~EAr~raEraA~erA~aEAr~ra~e~ 638 (853)
+|||+.|-|+|+ ||||+=-|.+
T Consensus 1 AEarlaakR~ar----aEAR~iRmre 22 (302)
T PF09738_consen 1 AEARLAAKRAAR----AEAREIRMRE 22 (302)
T ss_pred ChhhHHHHHHhh----HHHHHHHHHH
Confidence 477877777664 4566555444
No 95
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=32.01 E-value=6.1e+02 Score=30.11 Aligned_cols=7 Identities=43% Similarity=0.520 Sum_probs=2.5
Q ss_pred HHHHHhh
Q 003048 637 EKAMAER 643 (853)
Q Consensus 637 e~a~~er 643 (853)
++++..+
T Consensus 374 ~~~~~~~ 380 (429)
T PRK00247 374 ARARARR 380 (429)
T ss_pred HHHHHHH
Confidence 3333333
No 96
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=29.35 E-value=94 Score=32.32 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=38.3
Q ss_pred CCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHHHHHHHHHHhhh
Q 003048 796 LTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFNS 850 (853)
Q Consensus 796 m~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~~LneAwe~F~d 850 (853)
+.+-+.|..++.-|----.++|||+...... -+.-.|..--..||+||++|++
T Consensus 18 ~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~--~~~d~a~eqSa~lnkAY~TLk~ 70 (168)
T KOG3192|consen 18 LSFKIDPDKLKEKYTDISKKLHPDRPGLSFA--GDTDQASEQSAELNKAYDTLKD 70 (168)
T ss_pred cCCCCCcchhhHHHHHHHHhhCccccccccc--ccchhHHHHHHHHHHHHHHHHh
Confidence 4455677777778888888999999653221 1222677778999999999976
No 97
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=27.45 E-value=1.4e+03 Score=29.28 Aligned_cols=109 Identities=39% Similarity=0.381 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhH-HHHHHHHHHHHHHHHHHHHHH--------HHHH-HHHHHHHHH
Q 003048 517 DAERVKRQRELEIERLRRIEEERERERER---EKDR-MAVDIATLEARERAFAEARER--------AERA-AVERATAEF 583 (853)
Q Consensus 517 ~~e~~~~e~e~eke~~r~~~e~~ere~e~---~~~r-~Avera~~Earera~aEArer--------aer~-A~erA~~EA 583 (853)
+.+..-+.|+..-+..++..+++-+..++ .+++ .+..-+|.-|+|++.+|...- ++|. ++.++++-+
T Consensus 502 E~eas~r~R~~ALEara~ALeERAr~~e~~L~~Re~a~a~Re~TLAahEaa~AE~E~aLRLREeA~aER~~~~~~aEaaa 581 (828)
T PF04094_consen 502 EAEASLRAREEALEARAKALEERARAAERSLEERERAAAQREATLAAHEAAAAEEESALRLREEALAERDRALNRAEAAA 581 (828)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hHHHHHhhhHHHHHHHHHHHHHH
Q 003048 584 RQRALAEARERLEKACAEAK--EKSLAEKTSMEARLRAERAAVER 626 (853)
Q Consensus 584 rera~~eAreraekaa~e~~--e~~~~eka~~EAr~raEraA~er 626 (853)
+.++..=+.-....+..+++ +-.-+++|.+.+|. +|-+|.++
T Consensus 582 ~Rlae~L~lREeA~~~~~~r~le~araeraa~~~ra-~eleArek 625 (828)
T PF04094_consen 582 QRLAEQLALREEAVEERERRHLESARAERAAMAARA-SELEAREK 625 (828)
T ss_pred HHHHHhhhccHHHHHHHHHhhhhhhHHHHHHHHHHH-HHHHHHHH
No 98
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=25.60 E-value=1.4e+03 Score=28.59 Aligned_cols=11 Identities=45% Similarity=0.679 Sum_probs=5.2
Q ss_pred hhhhh-hhHHHh
Q 003048 68 TAANG-RRLREA 78 (853)
Q Consensus 68 ~~eng-k~~~ea 78 (853)
+.|+| ++|-++
T Consensus 22 ~~EtGtrrlseL 33 (940)
T KOG4661|consen 22 MPETGTRRLSEL 33 (940)
T ss_pred Ccccccchhhhe
Confidence 44555 444444
No 99
>PF13340 DUF4096: Putative transposase of IS4/5 family (DUF4096)
Probab=25.06 E-value=61 Score=28.48 Aligned_cols=41 Identities=22% Similarity=0.500 Sum_probs=34.2
Q ss_pred cccHHHHHhhcccccCCCCCCcccCCCccCChhHHHHHHHHh
Q 003048 771 EGNLRALLSTLQYILGPDSGWHPIPLTEVITSAAVKKAYRKA 812 (853)
Q Consensus 771 e~NIRaLLstL~~VLW~~~~Wk~Vgm~dL~t~~~VKKAYRKA 812 (853)
.-++|.+|..+-+||..||.|..|+ .+.-....|-..|++-
T Consensus 24 ~~~~R~v~~ail~~lrtG~~Wr~LP-~~fg~~~tv~~~f~rW 64 (75)
T PF13340_consen 24 RIDLREVLNAILYVLRTGCPWRDLP-EDFGPWSTVYRRFRRW 64 (75)
T ss_pred ccchHHHHhcccccceecceecccc-hhccCcCcHHHHHHHH
Confidence 4589999999999999999999988 5666777777777654
No 100
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=22.86 E-value=1.1e+02 Score=30.42 Aligned_cols=39 Identities=26% Similarity=0.408 Sum_probs=27.6
Q ss_pred cCCCccCChhHHHHHHHHhhhhcCCCccccCCCChhHHHHHHHHHH
Q 003048 794 IPLTEVITSAAVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFD 839 (853)
Q Consensus 794 Vgm~dL~t~~~VKKAYRKA~L~vHPDKl~~~gas~eqk~iAe~vF~ 839 (853)
|+|.+.+++.+|.+.|.++.-.-+|+|.. | -||-.+||.
T Consensus 64 Lnv~~~~~~eeI~k~y~~Lf~~Nd~~kGG----S---fYLQSKV~r 102 (127)
T PF03656_consen 64 LNVKEELSREEIQKRYKHLFKANDPSKGG----S---FYLQSKVFR 102 (127)
T ss_dssp HT--G--SHHHHHHHHHHHHHHT-CCCTS--------HHHHHHHHH
T ss_pred cCCCCccCHHHHHHHHHHHHhccCCCcCC----C---HHHHHHHHH
Confidence 46666888999999999999999999864 3 378777775
No 101
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=22.17 E-value=1.2e+03 Score=28.86 Aligned_cols=14 Identities=14% Similarity=0.375 Sum_probs=6.8
Q ss_pred hcccccCCCCCCcc
Q 003048 780 TLQYILGPDSGWHP 793 (853)
Q Consensus 780 tL~~VLW~~~~Wk~ 793 (853)
+|.|=+|....|..
T Consensus 453 ~mGyk~~d~nk~Eq 466 (591)
T KOG2412|consen 453 MMGYKAWDSNKWEQ 466 (591)
T ss_pred hhcccccccccccc
Confidence 44455554445543
No 102
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=20.85 E-value=6.9e+02 Score=28.34 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 003048 534 RIEEEREREREREKDRMAVDIATLEAR 560 (853)
Q Consensus 534 ~~~e~~ere~e~~~~r~Avera~~Ear 560 (853)
.+.|..++++.+.+.-..+.+|.+-.+
T Consensus 111 e~~E~~~~~k~~~ks~~~~~~a~~r~q 137 (290)
T KOG2689|consen 111 ELREALEREKQRRKSGDEMSAAKRRLQ 137 (290)
T ss_pred HHHHhhhhHHhhhhcccHHHHHHHHHH
Confidence 344445555555555555554444333
Done!