Your job contains 1 sequence.
>003053
MRSFSFFLFSFFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDG
DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRA
DGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGP
PVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGN
PLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPTSKSPEH
EKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGE
IVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFND
LYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVTPFHSICGD
APEIDKKNNSEDTCDLSKTNQDTALAMGKGAAIKELMNLPLSELERRCRHNGLSLVGGRE
MMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSGRYSRGWKETNMEAESMGLSGWNGYEE
DEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDPVLPASKWALEDDESDDEQKRSSRGL
GLSYSSSGSENAGDGPSKADDVDFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESL
EERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDVSGNKRRDRRDEILDSRKRHRSQSQS
ESPPPRKSSIRDRERESDLDRDRERHRDRDRAHDFESERGRERREKSGSRERDDHDRDRG
RDRDRDRRRRVK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003053
(852 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2179295 - symbol:RRC1 "reduced red-light respo... 2471 2.7e-297 2
TAIR|locus:2183775 - symbol:AT5G10800 species:3702 "Arabi... 2356 1.6e-244 1
UNIPROTKB|E1C0P9 - symbol:U2SURP "Uncharacterized protein... 814 8.8e-93 3
UNIPROTKB|F1MHP1 - symbol:U2SURP "Uncharacterized protein... 818 1.3e-90 2
UNIPROTKB|E2R1V3 - symbol:U2SURP "Uncharacterized protein... 818 2.7e-90 2
UNIPROTKB|O15042 - symbol:U2SURP "U2 snRNP-associated SUR... 818 2.7e-90 2
UNIPROTKB|F1SKE6 - symbol:U2SURP "Uncharacterized protein... 818 2.7e-90 2
RGD|1307882 - symbol:U2surp "U2 snRNP-associated SURP dom... 818 2.7e-90 2
MGI|MGI:1915208 - symbol:U2surp "U2 snRNP-associated SURP... 818 4.4e-90 2
UNIPROTKB|E7ET15 - symbol:U2SURP "U2 snRNP-associated SUR... 807 3.9e-89 2
ZFIN|ZDB-GENE-070912-400 - symbol:u2surp "U2 snRNP-associ... 782 7.2e-88 2
FB|FBgn0034572 - symbol:CG9346 species:7227 "Drosophila m... 718 1.4e-76 2
ZFIN|ZDB-GENE-070410-141 - symbol:zgc:163098 "zgc:163098"... 739 3.6e-73 1
UNIPROTKB|C9JB80 - symbol:U2SURP "U2 snRNP-associated SUR... 495 1.4e-55 2
WB|WBGene00015581 - symbol:C07H6.4 species:6239 "Caenorha... 220 3.3e-51 4
DICTYBASE|DDB_G0281687 - symbol:DDB_G0281687 "U2 snRNP-as... 487 5.1e-43 2
UNIPROTKB|E7EW00 - symbol:U2SURP "U2 snRNP-associated SUR... 346 1.3e-30 1
UNIPROTKB|H0Y8D9 - symbol:U2SURP "U2 snRNP-associated SUR... 346 1.3e-30 1
DICTYBASE|DDB_G0293252 - symbol:DDB_G0293252 "putative RN... 185 1.3e-15 2
UNIPROTKB|E7ETC0 - symbol:TIAL1 "Nucleolysin TIAR" specie... 127 4.4e-07 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 147 7.2e-07 1
UNIPROTKB|F1NDX1 - symbol:CHERP "Uncharacterized protein"... 128 9.6e-07 2
UNIPROTKB|J3QK89 - symbol:CHERP "Calcium homeostasis endo... 131 1.6e-06 3
ZFIN|ZDB-GENE-070615-33 - symbol:sugp1 "SURP and G patch ... 144 2.7e-06 1
TAIR|locus:2023903 - symbol:ATE1 "ATPase E1" species:3702... 126 3.4e-06 1
UNIPROTKB|F1S9W3 - symbol:CHERP "Uncharacterized protein"... 130 7.5e-06 3
WB|WBGene00004701 - symbol:rsp-4 species:6239 "Caenorhabd... 119 7.5e-06 2
UNIPROTKB|Q09511 - symbol:rsp-4 "Probable splicing factor... 119 7.5e-06 2
TAIR|locus:2012211 - symbol:RBP47A "RNA-binding protein 4... 138 7.5e-06 1
UNIPROTKB|Q8IWX8 - symbol:CHERP "Calcium homeostasis endo... 131 7.6e-06 3
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ... 137 9.3e-06 1
UNIPROTKB|F1NDZ9 - symbol:CHERP "Uncharacterized protein"... 128 9.4e-06 2
UNIPROTKB|A8E648 - symbol:CHERP "CHERP protein" species:9... 130 9.6e-06 3
UNIPROTKB|J9NZK1 - symbol:CHERP "Uncharacterized protein"... 130 9.6e-06 3
UNIPROTKB|E2RHU5 - symbol:CHERP "Uncharacterized protein"... 130 1.1e-05 3
SGD|S000000416 - symbol:NGR1 "RNA binding protein that ne... 139 1.1e-05 1
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 136 1.2e-05 1
POMBASE|SPBC11C11.01 - symbol:SPBC11C11.01 "U2-associated... 136 1.3e-05 1
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 135 1.5e-05 1
UNIPROTKB|F5H5X1 - symbol:SFSWAP "Splicing factor, suppre... 114 1.6e-05 2
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi... 112 1.8e-05 1
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 128 2.9e-05 1
UNIPROTKB|G4MV79 - symbol:MGG_15600 "Uncharacterized prot... 95 4.1e-05 2
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 131 4.2e-05 1
UNIPROTKB|F1NAQ9 - symbol:SUGP1 "Uncharacterized protein"... 131 4.6e-05 2
UNIPROTKB|Q12872 - symbol:SFSWAP "Splicing factor, suppre... 114 6.1e-05 2
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 130 6.1e-05 1
TAIR|locus:2018794 - symbol:UBP1B "oligouridylate binding... 129 6.6e-05 1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 130 8.3e-05 1
TAIR|locus:2014340 - symbol:UBP1A "oligouridylate-binding... 128 8.8e-05 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 127 8.9e-05 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 127 9.1e-05 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 130 9.6e-05 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 130 9.6e-05 1
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 128 0.00014 1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 128 0.00015 1
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 128 0.00015 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 128 0.00016 1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 128 0.00016 1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 128 0.00016 1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 128 0.00016 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 128 0.00016 1
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 128 0.00016 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 121 0.00017 1
UNIPROTKB|H0YFR9 - symbol:SFSWAP "Splicing factor, suppre... 123 0.00018 1
ASPGD|ASPL0000075677 - symbol:AN4943 species:162425 "Emer... 101 0.00019 2
UNIPROTKB|F2Z2U1 - symbol:RBMY1A1 "RNA-binding motif prot... 102 0.00021 1
DICTYBASE|DDB_G0290307 - symbol:DDB_G0290307 "ELAVL1-like... 125 0.00021 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 123 0.00021 1
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 124 0.00022 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 124 0.00023 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 123 0.00026 1
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 125 0.00033 1
UNIPROTKB|E5RH24 - symbol:PABPC1 "Polyadenylate-binding p... 100 0.00034 1
UNIPROTKB|E5RJB9 - symbol:PABPC1 "Polyadenylate-binding p... 100 0.00034 1
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi... 100 0.00034 1
UNIPROTKB|A4FV64 - symbol:SF4 "SF4 protein" species:9913 ... 123 0.00035 2
UNIPROTKB|E2RCV3 - symbol:SUGP1 "Uncharacterized protein"... 123 0.00035 2
UNIPROTKB|J9P8U4 - symbol:SUGP1 "Uncharacterized protein"... 123 0.00036 2
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 131 0.00037 2
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 123 0.00037 1
UNIPROTKB|H0YAP2 - symbol:PABPC1 "Polyadenylate-binding p... 99 0.00043 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 124 0.00044 1
ZFIN|ZDB-GENE-040407-1 - symbol:cherp "calcium homeostasi... 118 0.00052 3
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 123 0.00055 1
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 113 0.00057 2
ASPGD|ASPL0000005578 - symbol:AN6676 species:162425 "Emer... 118 0.00059 1
UNIPROTKB|G4NFS0 - symbol:MGG_08741 "tRNA selenocysteine-... 120 0.00062 1
ASPGD|ASPL0000035772 - symbol:rrmA species:162425 "Emeric... 119 0.00073 1
UNIPROTKB|Q8IWZ8 - symbol:SUGP1 "SURP and G-patch domain-... 117 0.00075 3
RGD|1310496 - symbol:Sugp1 "SURP and G patch domain conta... 120 0.00076 2
SGD|S000001128 - symbol:NAM8 "RNA binding protein, compon... 120 0.00089 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 96 0.00091 1
UNIPROTKB|G4NLD4 - symbol:MGG_02946 "Pre-mRNA-splicing fa... 120 0.00092 1
>TAIR|locus:2179295 [details] [associations]
symbol:RRC1 "reduced red-light responses in cry1cry2
background 1" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009888 "tissue
development" evidence=RCA] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=RCA] [GO:0010413
"glucuronoxylan metabolic process" evidence=RCA] [GO:0010638
"positive regulation of organelle organization" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0033044
"regulation of chromosome organization" evidence=RCA] [GO:0045492
"xylan biosynthetic process" evidence=RCA] [GO:0050665 "hydrogen
peroxide biosynthetic process" evidence=RCA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR003034 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
PROSITE:PS50800 SMART:SM00360 SMART:SM00648 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 eggNOG:COG0724 InterPro:IPR006569 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312
KO:K12842 EMBL:AF360212 EMBL:AY040060 IPI:IPI00527464
RefSeq:NP_568464.1 UniGene:At.23362 PDB:2E62 PDBsum:2E62
ProteinModelPortal:Q9C5J3 SMR:Q9C5J3 IntAct:Q9C5J3 PRIDE:Q9C5J3
EnsemblPlants:AT5G25060.1 GeneID:832577 KEGG:ath:AT5G25060
TAIR:At5g25060 HOGENOM:HOG000030509 InParanoid:Q9C5J3 OMA:EPYIMIT
PhylomeDB:Q9C5J3 ProtClustDB:CLSN2689864 EvolutionaryTrace:Q9C5J3
ArrayExpress:Q9C5J3 Genevestigator:Q9C5J3 Uniprot:Q9C5J3
Length = 946
Score = 2471 (874.9 bits), Expect = 2.7e-297, Sum P(2) = 2.7e-297
Identities = 482/620 (77%), Positives = 532/620 (85%)
Query: 36 PSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVK 95
PSSRFDELPDDFDPSG+ PGSFDDGDPQTTNLYVGNLSP+VDENFLLRTFGRFGPIASVK
Sbjct: 151 PSSRFDELPDDFDPSGR-PGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVK 209
Query: 96 IMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVXXXXXXXX 155
IMWPRT+EE+RRQRNCGFV+FMNRADGQAAKDEMQG++VYEYELKIGWGK+V
Sbjct: 210 IMWPRTDEEKRRQRNCGFVSFMNRADGQAAKDEMQGIIVYEYELKIGWGKAVSLPSQALP 269
Query: 156 XXXXGQMAIRSKEGATVILSGPSGPPV-TTVPSQNSELVLTPNVPDIMVIPPEDRHLRHV 214
G MAIRSKEG ++ SG +GPP+ T+VP+QNSELVLTPNVPDI V+ PED HLRHV
Sbjct: 270 APPPGHMAIRSKEGCNLVFSGQTGPPIITSVPNQNSELVLTPNVPDITVVTPEDEHLRHV 329
Query: 215 IDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWR 274
IDTLALYVLDG CAFEQAIMERGRGNPLF F+FELGSKEHTYYVWRLYSFAQGDTLQRWR
Sbjct: 330 IDTLALYVLDGECAFEQAIMERGRGNPLFKFMFELGSKEHTYYVWRLYSFAQGDTLQRWR 389
Query: 275 TEPFIMITGSGRWIPPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDML 334
TEP+IMITGSGRWIPP LP +++ EHEKES +TYAAGR+RRAE ERTLTD QRDEFEDML
Sbjct: 390 TEPYIMITGSGRWIPPPLPVTRTQEHEKESASTYAAGRTRRAEVERTLTDPQRDEFEDML 449
Query: 335 RALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSS 394
RALTLERSQIKEAMGFALDNADAAGE+VEVLTESLTLKET IPTKVARLMLVSD+LHNSS
Sbjct: 450 RALTLERSQIKEAMGFALDNADAAGEVVEVLTESLTLKETSIPTKVARLMLVSDILHNSS 509
Query: 395 APVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDA 454
A VKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVW+DWFLFSDA
Sbjct: 510 ARVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWADWFLFSDA 569
Query: 455 YVNGLRATFLRSGNSGVTPFHSICGDAPEIDKKNNSEDTCDLSKTNQDTALAMGKGAAIK 514
Y+ GLR+TFLRSG SGVT FHSICGDAPEI+ K+ +++ D+ K N D ALA+GKGAA +
Sbjct: 570 YIYGLRSTFLRSGVSGVTSFHSICGDAPEIENKSYADNMSDIGKINPDAALAIGKGAARQ 629
Query: 515 ELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSG 574
ELMNLP++ELERRCRHNGLSLVGGR MMV RLLSLED EKQRGYE D++ H Q+ S
Sbjct: 630 ELMNLPIAELERRCRHNGLSLVGGRVMMVTRLLSLEDTEKQRGYEAVDEIPK-HPQNHST 688
Query: 575 RYSRGWKETNMEAESMGLSGWNGYEEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKND 634
W+E E E + N Y E E + + V L T + PQPE+KAF KEKN+
Sbjct: 689 -----WEEVKSEREHIK----NSYAEVE-MKEPVN---LPTTIPIPQPELKAFVGKEKNE 735
Query: 635 PVLPASKWALEDDESDDEQK 654
+LPASKWA +DDE+DDEQK
Sbjct: 736 LILPASKWARDDDEADDEQK 755
Score = 407 (148.3 bits), Expect = 2.7e-297, Sum P(2) = 2.7e-297
Identities = 94/200 (47%), Positives = 126/200 (63%)
Query: 580 WKETNMEAESMGLSGWNGYEEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDPVLPA 639
W+E E E + N Y E E + + V L T + PQPE+KAF KEKN+ +LPA
Sbjct: 689 WEEVKSEREHIK----NSYAEVE-MKEPVN---LPTTIPIPQPELKAFVGKEKNELILPA 740
Query: 640 SKWALEDDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDASIPVQPDSGMN 699
SKWA +DDE+DDEQK +N G KAD D + + QPD+GM+
Sbjct: 741 SKWARDDDEADDEQKRSSSSGS--------DNTGGITFKADGEDLKGNDCVRAQPDNGMD 792
Query: 700 EEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDVSGNK 759
EEQRQK RR+EV+LIEYRE+LEE+G+K+ EEIE+KV I+RKRLE +YGL+ PNE K
Sbjct: 793 EEQRQKRRRIEVALIEYRETLEEQGMKNPEEIERKVEINRKRLEVDYGLSGPNEGNRNQK 852
Query: 760 ----RRDRRDEILDS-RKRH 774
R+++R++ +S +KRH
Sbjct: 853 SIIERKEKREDSQESSKKRH 872
>TAIR|locus:2183775 [details] [associations]
symbol:AT5G10800 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006396
"RNA processing" evidence=IEA] [GO:0000394 "RNA splicing, via
endonucleolytic cleavage and ligation" evidence=RCA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=RCA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 EMBL:CP002688 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312
KO:K12842 UniGene:At.6008 IPI:IPI01019487 RefSeq:NP_196641.2
UniGene:At.32334 ProteinModelPortal:F4KIA8 SMR:F4KIA8 PRIDE:F4KIA8
EnsemblPlants:AT5G10800.1 GeneID:830947 KEGG:ath:AT5G10800
OMA:WAREDDE Uniprot:F4KIA8
Length = 947
Score = 2356 (834.4 bits), Expect = 1.6e-244, P = 1.6e-244
Identities = 463/618 (74%), Positives = 521/618 (84%)
Query: 37 SSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKI 96
SSRFDELPD FDPSG+L GS DDGDPQTTNLYV NLS +VDENFLLRTFGRFGPIASVKI
Sbjct: 160 SSRFDELPDYFDPSGRL-GSLDDGDPQTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKI 218
Query: 97 MWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVXXXXXXXXX 156
MWPRTEEE+RR+R+CGFVAFMNRADG+AAK++MQG++VYEYELKIGWGK V
Sbjct: 219 MWPRTEEEKRRERHCGFVAFMNRADGEAAKEKMQGIIVYEYELKIGWGKVVFLPSQALPA 278
Query: 157 XXXGQMAIRSKEGATVILSGPSGPPVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVID 216
G MAIRSKEG +I S SGPP+ +VP+QNSELVLTPNVPDI VI PED HL+ +ID
Sbjct: 279 PPPGHMAIRSKEGCNLIFSVTSGPPMNSVPNQNSELVLTPNVPDITVISPEDEHLKQIID 338
Query: 217 TLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTE 276
T+AL VLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTE
Sbjct: 339 TMALNVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTE 398
Query: 277 PFIMITGSGRWIPPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRA 336
P+IMI GSGRWIPP LP ++SPEH KES TYAAG+SR E E+TLTDSQRDEFEDMLRA
Sbjct: 399 PYIMIAGSGRWIPPPLPATRSPEHGKESRGTYAAGKSRCTEAEQTLTDSQRDEFEDMLRA 458
Query: 337 LTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAP 396
LTLERSQI+EAMGFALDNA+AAGE+VEVLTESLTLKET IPTKVARLMLVSD++HNSSA
Sbjct: 459 LTLERSQIREAMGFALDNAEAAGEVVEVLTESLTLKETSIPTKVARLMLVSDIIHNSSAR 518
Query: 397 VKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYV 456
VKNASAYRTKFEATLPDIMESFNDLY S+ GRITAEAL+ERVLKVLQVW+DWFLFSDAY+
Sbjct: 519 VKNASAYRTKFEATLPDIMESFNDLYHSVHGRITAEALRERVLKVLQVWADWFLFSDAYI 578
Query: 457 NGLRATFLRSGNSGVTPFHSICGDAPEIDKKNNSEDTCDLSKTNQDTALAMGKGAAIKEL 516
NGLRATFLRS N GVT FHSICGDAP+I+KK + D K NQD ALAMG+GAA +EL
Sbjct: 579 NGLRATFLRSRNFGVTSFHSICGDAPDIEKKGLIGNMNDADKINQDAALAMGEGAARQEL 638
Query: 517 MNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSGRY 576
MN P+SELERRCRHNGLSL+GGREMMVARL+ L+DAEKQRGYE+ D+ + + Q S
Sbjct: 639 MNRPISELERRCRHNGLSLLGGREMMVARLVCLKDAEKQRGYEVVDE-NAKYRQGHST-- 695
Query: 577 SRGWKETNMEAESMGLSGWNGYEEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDPV 636
W+E N+E + M S ++ E +E + A ++P+ PQPE+KAF KKEK D +
Sbjct: 696 ---WEEVNIEPKRMKTS-YDKVETEEPVDLA-STIPI------PQPELKAFVKKEKIDLI 744
Query: 637 LPASKWALEDDESDDEQK 654
LP S+WA EDDE+DDEQK
Sbjct: 745 LPTSRWAREDDETDDEQK 762
Score = 411 (149.7 bits), Expect = 4.5e-35, P = 4.5e-35
Identities = 96/205 (46%), Positives = 132/205 (64%)
Query: 573 SGRYSRG---WKETNMEAESMGLSGWNGYEEDEKLSQAVGSVPLGTMLTTPQPEIKAFTK 629
+ +Y +G W+E N+E + M S ++ E +E + A ++P+ PQPE+KAF K
Sbjct: 686 NAKYRQGHSTWEEVNIEPKRMKTS-YDKVETEEPVDLA-STIPI------PQPELKAFVK 737
Query: 630 KEKNDPVLPASKWALEDDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDAS 689
KEK D +LP S+WA EDDE+DDEQK +NAG K D+ D D S
Sbjct: 738 KEKIDLILPTSRWAREDDETDDEQKKSYSSGS--------DNAGGITFKTDEEDLKADPS 789
Query: 690 IPVQPDSGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLA 749
+ VQP++ ++ EQRQKLR +E++LIEYRESLEE+G+K+SEEIE+KVAIHRKRLE++ GL+
Sbjct: 790 VRVQPENEIDVEQRQKLRHIEIALIEYRESLEEQGMKNSEEIERKVAIHRKRLEAD-GLS 848
Query: 750 DPNEDVSGNKRRDRRDEILDSRKRH 774
N+ V KR R D SRKR+
Sbjct: 849 G-NQRVLPEKREKREDSRDSSRKRN 872
>UNIPROTKB|E1C0P9 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 OMA:SILQANS
GeneTree:ENSGT00390000010687 EMBL:AADN02024092 EMBL:AADN02024093
EMBL:AADN02024094 IPI:IPI00583949 ProteinModelPortal:E1C0P9
Ensembl:ENSGALT00000004113 Uniprot:E1C0P9
Length = 985
Score = 814 (291.6 bits), Expect = 8.8e-93, Sum P(3) = 8.8e-93
Identities = 174/419 (41%), Positives = 241/419 (57%)
Query: 54 PGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGF 113
PGS D GDP TTNLY+GN++PQ++E L + FGRFGP+ASVKIMWPRT+EER R+RNCGF
Sbjct: 220 PGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGF 279
Query: 114 VAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVXXXXXXXXXX-XXGQMAIRSKEGATV 172
VAFMNR D + A + G ++ +E+K+GWGK+V + +
Sbjct: 280 VAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLP 339
Query: 173 ILSGP----SGP--PVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGG 226
+ P P P+ P + T + + V+ P +R+L +I + +V+ G
Sbjct: 340 FNAQPRERLKNPNAPMLPPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREG 399
Query: 227 CAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGR 286
FE IM R NP+F FLFE + H YY W+LYS QGD +WRTE F M
Sbjct: 400 PMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDAPTKWRTEDFRMFKNGSF 459
Query: 287 WIPPAL-PTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIK 345
W PP L P E+E+ + A L + QRD+ E++LR LT ++ I
Sbjct: 460 WRPPPLNPYLHGMSEEQETEAFVEEPNKKGA-----LKEEQRDKLEEILRGLTPRKNDIG 514
Query: 346 EAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRT 405
+AM F L+NA+AA EIV+ +TESL++ +TP+P K+ARL LVSDVL+NSSA V NAS YR
Sbjct: 515 DAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRK 574
Query: 406 KFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 464
FE L I N YR+I G + +E K+RV+ + W DW ++ + ++ L+ FL
Sbjct: 575 FFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 633
Score = 100 (40.3 bits), Expect = 8.8e-93, Sum P(3) = 8.8e-93
Identities = 34/154 (22%), Positives = 72/154 (46%)
Query: 625 KAFTKKEKNDPVLPASKWALED--DESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDV 682
+A + E + SKW L D +ES++E+ + + ++ +
Sbjct: 719 EAVDESELEAQAVTTSKWELFDQHEESEEEEIPNQEEESEDEEDTQSSKSEEQHMYSNPI 778
Query: 683 DFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLE--ERGIKSSEEIEKKVAIHRK 740
+ S S M+EE+R KLR +E+ ++++++ LE +R K + +++V +R
Sbjct: 779 KEEMPESKSSVKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRD 838
Query: 741 RLESEYGLADPNEDVSGNKRRDRRD-EILDSRKR 773
+L + +++ + RD++D E DSR +
Sbjct: 839 KLLQR----EKEKELERERERDKKDKEKSDSRSK 868
Score = 60 (26.2 bits), Expect = 1.4e-88, Sum P(3) = 1.4e-88
Identities = 31/186 (16%), Positives = 78/186 (41%)
Query: 582 ETNMEAESMGLSGWNGYEEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKN---DPV-- 636
E+ +EA+++ S W +++ E+ + +P + + + ++ +E++ +P+
Sbjct: 723 ESELEAQAVTTSKWELFDQHEESEEE--EIPNQEEESEDEEDTQSSKSEEQHMYSNPIKE 780
Query: 637 -LPASKWALEDDESDDEQKXXXXXXXXXXXXXXXE-NAGDGPSKADDVDFTIDASIPVQP 694
+P SK +++ E +E++ E +G P K + +
Sbjct: 781 EMPESKSSVKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQ---SFQEQVEHYR 837
Query: 695 DSGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNED 754
D + E+ ++L R + +E + R K +E E+ ++R + + +
Sbjct: 838 DKLLQREKEKELERERERDKKDKEKSDSRS-KDKKEKEECTPTRKERRKRRHSNSPSPSR 896
Query: 755 VSGNKR 760
SG++R
Sbjct: 897 SSGSRR 902
Score = 43 (20.2 bits), Expect = 8.8e-93, Sum P(3) = 8.8e-93
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 33 LFQPSSRF-DELPDDFDPSGKLPGS 56
+++PSSRF D+ PS + P S
Sbjct: 114 IYKPSSRFSDQKNQPSQPSNEKPPS 138
Score = 42 (19.8 bits), Expect = 1.1e-86, Sum P(3) = 1.1e-86
Identities = 19/73 (26%), Positives = 27/73 (36%)
Query: 701 EQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDVSGNKR 760
++R+K RR S R S R S + E+ H++ S D DVS +
Sbjct: 881 KERRK-RRHSNSPSPSRSSGSRRAKSPSPKSERSERSHKESSRSRSSHKDSPRDVSKKGK 939
Query: 761 RDRRDEILDSRKR 773
R R R
Sbjct: 940 RSPSGSRTPKRSR 952
>UNIPROTKB|F1MHP1 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 OMA:SILQANS GeneTree:ENSGT00390000010687
EMBL:DAAA02002870 IPI:IPI00701440 Ensembl:ENSBTAT00000012063
Uniprot:F1MHP1
Length = 1035
Score = 818 (293.0 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
Identities = 174/419 (41%), Positives = 244/419 (58%)
Query: 54 PGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGF 113
PGS D GDP TTNLY+GN++PQ++E L + FGRFGP+ASVKIMWPRT+EER R+RNCGF
Sbjct: 263 PGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGF 322
Query: 114 VAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVXXXXXXXXXX-XXGQMAIRSKEGATV 172
VAFMNR D + A + G ++ +E+K+GWGK+V + +
Sbjct: 323 VAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLP 382
Query: 173 ILSGP----SGP--PVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGG 226
+ P P P+ P + T + + V+ P +R+L +I + +V+ G
Sbjct: 383 FNAQPRERLKNPNAPMLPPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREG 442
Query: 227 CAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGR 286
FE IM R NP+F FLFE + H YY W+LYS QGD+ +WRTE F M
Sbjct: 443 PMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSF 502
Query: 287 WIPPAL-PTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIK 345
W PP L P E+E+ + S++ L + QRD+ E++LR LT ++ I
Sbjct: 503 WRPPPLNPYLHGMSEEQET-EAFVEEPSKKG----ALKEEQRDKLEEILRGLTPRKNDIG 557
Query: 346 EAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRT 405
+AM F L+NA+AA EIV+ +TESL++ +TP+P K+ARL LVSDVL+NSSA V NAS YR
Sbjct: 558 DAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRK 617
Query: 406 KFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 464
FE L I N YR+I G + +E K+RV+ + W DW ++ + ++ L+ FL
Sbjct: 618 FFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 676
Score = 105 (42.0 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
Identities = 34/156 (21%), Positives = 75/156 (48%)
Query: 625 KAFTKKEKNDPVLPASKWALED--DESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDV 682
+A + E + SKW L D +ES++E+ + + ++ +
Sbjct: 762 EAVDESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPI 821
Query: 683 DFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLE--ERGIKSSEEIEKKVAIHRK 740
+ S S M+EE+R KLR +E+ ++++++ LE +R K+ + +++V +R
Sbjct: 822 KEEMTES-KFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKAGQSFQEQVEHYRD 880
Query: 741 RL--ESEYGLADPNEDVSGNKRRDRRD-EILDSRKR 773
+L + + +++ + RD++D E L+SR +
Sbjct: 881 KLLQRKKKKKQEKEKELERERERDKKDKEKLESRSK 916
Score = 49 (22.3 bits), Expect = 1.0e-84, Sum P(2) = 1.0e-84
Identities = 35/189 (18%), Positives = 73/189 (38%)
Query: 582 ETNMEAESMGLSGWNGY------EEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDP 635
E+ +EA+++ S W + EE+E +Q S ++ E ++ K +
Sbjct: 766 ESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPIKEE- 824
Query: 636 VLPASKWALEDDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKA-----DDVDFTIDASI 690
+ SK++ + S++++ +G P KA + V+ D +
Sbjct: 825 -MTESKFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKAGQSFQEQVEHYRDKLL 883
Query: 691 PVQPDSGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLAD 750
Q +E+ ++L R + +E LE R K +E ++ ++R
Sbjct: 884 --QRKKKKKQEKEKELERERERDKKDKEKLESRS-KDKKEKDECTPTRKERKRRHSTSPS 940
Query: 751 PNEDVSGNK 759
P+ SG +
Sbjct: 941 PSRSSSGRR 949
Score = 43 (20.2 bits), Expect = 4.5e-84, Sum P(2) = 4.5e-84
Identities = 20/76 (26%), Positives = 29/76 (38%)
Query: 702 QRQKLRRLEVSLIEYRESLEERGIKS----SEEIEKKVAIHRKRLESEYGLADPNEDVSG 757
++++ RR S R S R +KS SE E+ H++ S D DVS
Sbjct: 928 RKERKRRHSTSPSPSRSSSGRR-VKSPSPKSERSERSERSHKESSRSRSSHKDSPRDVSK 986
Query: 758 NKRRDRRDEILDSRKR 773
+R R R
Sbjct: 987 KAKRSPSGSRTPKRSR 1002
>UNIPROTKB|E2R1V3 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000061 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102
PROSITE:PS50128 SMART:SM00360 SMART:SM00648 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 OMA:SILQANS
GeneTree:ENSGT00390000010687 EMBL:AAEX03013650
Ensembl:ENSCAFT00000012763 Uniprot:E2R1V3
Length = 1028
Score = 818 (293.0 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 174/419 (41%), Positives = 244/419 (58%)
Query: 54 PGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGF 113
PGS D GDP TTNLY+GN++PQ++E L + FGRFGP+ASVKIMWPRT+EER R+RNCGF
Sbjct: 262 PGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGF 321
Query: 114 VAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVXXXXXXXXXX-XXGQMAIRSKEGATV 172
VAFMNR D + A + G ++ +E+K+GWGK+V + +
Sbjct: 322 VAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLP 381
Query: 173 ILSGP----SGP--PVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGG 226
+ P P P+ P + T + + V+ P +R+L +I + +V+ G
Sbjct: 382 FNAQPRERLKNPNAPMLPPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREG 441
Query: 227 CAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGR 286
FE IM R NP+F FLFE + H YY W+LYS QGD+ +WRTE F M
Sbjct: 442 PMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSF 501
Query: 287 WIPPAL-PTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIK 345
W PP L P E+E+ + S++ L + QRD+ E++LR LT ++ I
Sbjct: 502 WRPPPLNPYLHGMSEEQET-EAFVEEPSKKG----ALKEEQRDKLEEILRGLTPRKNDIG 556
Query: 346 EAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRT 405
+AM F L+NA+AA EIV+ +TESL++ +TP+P K+ARL LVSDVL+NSSA V NAS YR
Sbjct: 557 DAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRK 616
Query: 406 KFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 464
FE L I N YR+I G + +E K+RV+ + W DW ++ + ++ L+ FL
Sbjct: 617 FFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 675
Score = 102 (41.0 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 34/154 (22%), Positives = 73/154 (47%)
Query: 625 KAFTKKEKNDPVLPASKWALED--DESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDV 682
+A + E + SKW L D +ES++E+ + + ++ +
Sbjct: 761 EAVDESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPI 820
Query: 683 DFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLE--ERGIKSSEEIEKKVAIHRK 740
+ S S M+EE+R KLR +E+ ++++++ LE +R K + +++V +R
Sbjct: 821 KEEMTES-KFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRD 879
Query: 741 RLESEYGLADPNEDVSGNKRRDRRD-EILDSRKR 773
+L + +++ + RD++D E L+SR +
Sbjct: 880 KLLQR----EKEKELERERERDKKDKEKLESRSK 909
Score = 50 (22.7 bits), Expect = 8.2e-85, Sum P(2) = 8.2e-85
Identities = 32/184 (17%), Positives = 69/184 (37%)
Query: 582 ETNMEAESMGLSGWNGY------EEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDP 635
E+ +EA+++ S W + EE+E +Q S ++ E ++ K +
Sbjct: 765 ESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPIKEE- 823
Query: 636 VLPASKWALEDDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDASIPVQPD 695
+ SK++ + S++++ +G P K + + D
Sbjct: 824 -MTESKFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQ---SFQEQVEHYRD 879
Query: 696 SGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDV 755
+ E+ ++L R + +E LE R K +E ++ ++R P+
Sbjct: 880 KLLQREKEKELERERERDKKDKEKLESRS-KDKKEKDECTPTRKERKRRHSTSPSPSRSS 938
Query: 756 SGNK 759
SG +
Sbjct: 939 SGRR 942
Score = 43 (20.2 bits), Expect = 4.5e-84, Sum P(2) = 4.5e-84
Identities = 20/76 (26%), Positives = 29/76 (38%)
Query: 702 QRQKLRRLEVSLIEYRESLEERGIKS----SEEIEKKVAIHRKRLESEYGLADPNEDVSG 757
++++ RR S R S R +KS SE E+ H++ S D DVS
Sbjct: 921 RKERKRRHSTSPSPSRSSSGRR-VKSPSPKSERSERSERSHKESSRSRSSHKDSPRDVSK 979
Query: 758 NKRRDRRDEILDSRKR 773
+R R R
Sbjct: 980 KAKRSPSGSRTPKRSR 995
>UNIPROTKB|O15042 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 HSSP:Q9NQ94 EMBL:AC018450 EMBL:AC026304 EMBL:BC006474
EMBL:BC016323 EMBL:BC105604 EMBL:BC111692 EMBL:AB002330
EMBL:BK000564 IPI:IPI00143753 IPI:IPI00790699 IPI:IPI00829908
RefSeq:NP_001073884.1 UniGene:Hs.596572 ProteinModelPortal:O15042
SMR:O15042 IntAct:O15042 STRING:O15042 PhosphoSite:O15042
PaxDb:O15042 PRIDE:O15042 Ensembl:ENST00000319822
Ensembl:ENST00000397933 Ensembl:ENST00000473835 GeneID:23350
KEGG:hsa:23350 UCSC:uc003evh.1 UCSC:uc003evi.1 UCSC:uc003evk.1
CTD:23350 GeneCards:GC03P142720 H-InvDB:HIX0003746 HGNC:HGNC:30855
HPA:HPA037545 neXtProt:NX_O15042 eggNOG:NOG307351
HOGENOM:HOG000286037 HOVERGEN:HBG093996 InParanoid:O15042 KO:K12842
OMA:SILQANS OrthoDB:EOG47SSD9 ChiTaRS:u2surp GenomeRNAi:23350
NextBio:45335 PMAP-CutDB:O15042 ArrayExpress:O15042 Bgee:O15042
Genevestigator:O15042 Uniprot:O15042
Length = 1029
Score = 818 (293.0 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 174/419 (41%), Positives = 244/419 (58%)
Query: 54 PGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGF 113
PGS D GDP TTNLY+GN++PQ++E L + FGRFGP+ASVKIMWPRT+EER R+RNCGF
Sbjct: 263 PGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGF 322
Query: 114 VAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVXXXXXXXXXX-XXGQMAIRSKEGATV 172
VAFMNR D + A + G ++ +E+K+GWGK+V + +
Sbjct: 323 VAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLP 382
Query: 173 ILSGP----SGP--PVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGG 226
+ P P P+ P + T + + V+ P +R+L +I + +V+ G
Sbjct: 383 FNAQPRERLKNPNAPMLPPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREG 442
Query: 227 CAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGR 286
FE IM R NP+F FLFE + H YY W+LYS QGD+ +WRTE F M
Sbjct: 443 PMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSF 502
Query: 287 WIPPAL-PTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIK 345
W PP L P E+E+ + S++ L + QRD+ E++LR LT ++ I
Sbjct: 503 WRPPPLNPYLHGMSEEQET-EAFVEEPSKKG----ALKEEQRDKLEEILRGLTPRKNDIG 557
Query: 346 EAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRT 405
+AM F L+NA+AA EIV+ +TESL++ +TP+P K+ARL LVSDVL+NSSA V NAS YR
Sbjct: 558 DAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRK 617
Query: 406 KFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 464
FE L I N YR+I G + +E K+RV+ + W DW ++ + ++ L+ FL
Sbjct: 618 FFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 676
Score = 102 (41.0 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 34/154 (22%), Positives = 73/154 (47%)
Query: 625 KAFTKKEKNDPVLPASKWALED--DESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDV 682
+A + E + SKW L D +ES++E+ + + ++ +
Sbjct: 762 EAVDESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPI 821
Query: 683 DFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLE--ERGIKSSEEIEKKVAIHRK 740
+ S S M+EE+R KLR +E+ ++++++ LE +R K + +++V +R
Sbjct: 822 KEEMTES-KFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRD 880
Query: 741 RLESEYGLADPNEDVSGNKRRDRRD-EILDSRKR 773
+L + +++ + RD++D E L+SR +
Sbjct: 881 KLLQR----EKEKELERERERDKKDKEKLESRSK 910
Score = 50 (22.7 bits), Expect = 8.2e-85, Sum P(2) = 8.2e-85
Identities = 32/184 (17%), Positives = 69/184 (37%)
Query: 582 ETNMEAESMGLSGWNGY------EEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDP 635
E+ +EA+++ S W + EE+E +Q S ++ E ++ K +
Sbjct: 766 ESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPIKEE- 824
Query: 636 VLPASKWALEDDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDASIPVQPD 695
+ SK++ + S++++ +G P K + + D
Sbjct: 825 -MTESKFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQ---SFQEQVEHYRD 880
Query: 696 SGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDV 755
+ E+ ++L R + +E LE R K +E ++ ++R P+
Sbjct: 881 KLLQREKEKELERERERDKKDKEKLESRS-KDKKEKDECTPTRKERKRRHSTSPSPSRSS 939
Query: 756 SGNK 759
SG +
Sbjct: 940 SGRR 943
Score = 43 (20.2 bits), Expect = 4.5e-84, Sum P(2) = 4.5e-84
Identities = 20/76 (26%), Positives = 29/76 (38%)
Query: 702 QRQKLRRLEVSLIEYRESLEERGIKS----SEEIEKKVAIHRKRLESEYGLADPNEDVSG 757
++++ RR S R S R +KS SE E+ H++ S D DVS
Sbjct: 922 RKERKRRHSTSPSPSRSSSGRR-VKSPSPKSERSERSERSHKESSRSRSSHKDSPRDVSK 980
Query: 758 NKRRDRRDEILDSRKR 773
+R R R
Sbjct: 981 KAKRSPSGSRTPKRSR 996
>UNIPROTKB|F1SKE6 [details] [associations]
symbol:U2SURP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 CTD:23350 KO:K12842 OMA:SILQANS
GeneTree:ENSGT00390000010687 EMBL:FP236268 RefSeq:XP_003358644.1
Ensembl:ENSSSCT00000012792 GeneID:100517309 KEGG:ssc:100517309
Uniprot:F1SKE6
Length = 1029
Score = 818 (293.0 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 174/419 (41%), Positives = 244/419 (58%)
Query: 54 PGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGF 113
PGS D GDP TTNLY+GN++PQ++E L + FGRFGP+ASVKIMWPRT+EER R+RNCGF
Sbjct: 263 PGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGF 322
Query: 114 VAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVXXXXXXXXXX-XXGQMAIRSKEGATV 172
VAFMNR D + A + G ++ +E+K+GWGK+V + +
Sbjct: 323 VAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLP 382
Query: 173 ILSGP----SGP--PVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGG 226
+ P P P+ P + T + + V+ P +R+L +I + +V+ G
Sbjct: 383 FNAQPRERLKNPNAPMLPPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREG 442
Query: 227 CAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGR 286
FE IM R NP+F FLFE + H YY W+LYS QGD+ +WRTE F M
Sbjct: 443 PMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSF 502
Query: 287 WIPPAL-PTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIK 345
W PP L P E+E+ + S++ L + QRD+ E++LR LT ++ I
Sbjct: 503 WRPPPLNPYLHGMSEEQET-EAFVEEPSKKG----ALKEEQRDKLEEILRGLTPRKNDIG 557
Query: 346 EAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRT 405
+AM F L+NA+AA EIV+ +TESL++ +TP+P K+ARL LVSDVL+NSSA V NAS YR
Sbjct: 558 DAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRK 617
Query: 406 KFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 464
FE L I N YR+I G + +E K+RV+ + W DW ++ + ++ L+ FL
Sbjct: 618 FFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 676
Score = 102 (41.0 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 34/154 (22%), Positives = 73/154 (47%)
Query: 625 KAFTKKEKNDPVLPASKWALED--DESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDV 682
+A + E + SKW L D +ES++E+ + + ++ +
Sbjct: 762 EAVDESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPI 821
Query: 683 DFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLE--ERGIKSSEEIEKKVAIHRK 740
+ S S M+EE+R KLR +E+ ++++++ LE +R K + +++V +R
Sbjct: 822 KEEMTES-KFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRD 880
Query: 741 RLESEYGLADPNEDVSGNKRRDRRD-EILDSRKR 773
+L + +++ + RD++D E L+SR +
Sbjct: 881 KLLQR----EKEKELERERERDKKDKEKLESRSK 910
Score = 50 (22.7 bits), Expect = 8.2e-85, Sum P(2) = 8.2e-85
Identities = 32/184 (17%), Positives = 69/184 (37%)
Query: 582 ETNMEAESMGLSGWNGY------EEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDP 635
E+ +EA+++ S W + EE+E +Q S ++ E ++ K +
Sbjct: 766 ESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPIKEE- 824
Query: 636 VLPASKWALEDDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDASIPVQPD 695
+ SK++ + S++++ +G P K + + D
Sbjct: 825 -MTESKFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQ---SFQEQVEHYRD 880
Query: 696 SGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDV 755
+ E+ ++L R + +E LE R K +E ++ ++R P+
Sbjct: 881 KLLQREKEKELERERERDKKDKEKLESRS-KDKKEKDECTPTRKERKRRHSTSPSPSRSS 939
Query: 756 SGNK 759
SG +
Sbjct: 940 SGRR 943
Score = 43 (20.2 bits), Expect = 4.5e-84, Sum P(2) = 4.5e-84
Identities = 20/76 (26%), Positives = 29/76 (38%)
Query: 702 QRQKLRRLEVSLIEYRESLEERGIKS----SEEIEKKVAIHRKRLESEYGLADPNEDVSG 757
++++ RR S R S R +KS SE E+ H++ S D DVS
Sbjct: 922 RKERKRRHSTSPSPSRSSSGRR-VKSPSPKSERSERSERSHKESSRSRSSHKDSPRDVSK 980
Query: 758 NKRRDRRDEILDSRKR 773
+R R R
Sbjct: 981 KAKRSPSGSRTPKRSR 996
>RGD|1307882 [details] [associations]
symbol:U2surp "U2 snRNP-associated SURP domain containing"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
RGD:1307882 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170
Pfam:PF08312 CTD:23350 KO:K12842 GeneTree:ENSGT00390000010687
IPI:IPI00370764 RefSeq:XP_002727165.1 RefSeq:XP_002730000.1
ProteinModelPortal:D4A4B4 Ensembl:ENSRNOT00000011609 GeneID:315903
KEGG:rno:315903 UCSC:RGD:1307882 NextBio:670025 ArrayExpress:D4A4B4
Uniprot:D4A4B4
Length = 985
Score = 818 (293.0 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 174/419 (41%), Positives = 244/419 (58%)
Query: 54 PGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGF 113
PGS D GDP TTNLY+GN++PQ++E L + FGRFGP+ASVKIMWPRT+EER R+RNCGF
Sbjct: 219 PGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGF 278
Query: 114 VAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVXXXXXXXXXX-XXGQMAIRSKEGATV 172
VAFMNR D + A + G ++ +E+K+GWGK+V + +
Sbjct: 279 VAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLP 338
Query: 173 ILSGP----SGP--PVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGG 226
+ P P P+ P + T + + V+ P +R+L +I + +V+ G
Sbjct: 339 FNAQPRERLKNPNAPMLPPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREG 398
Query: 227 CAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGR 286
FE IM R NP+F FLFE + H YY W+LYS QGD+ +WRTE F M
Sbjct: 399 PMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSF 458
Query: 287 WIPPAL-PTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIK 345
W PP L P E+E+ + S++ L + QRD+ E++LR LT ++ I
Sbjct: 459 WRPPPLNPYLHGMSEEQET-EAFVEEPSKKG----ALKEEQRDKLEEILRGLTPRKNDIG 513
Query: 346 EAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRT 405
+AM F L+NA+AA EIV+ +TESL++ +TP+P K+ARL LVSDVL+NSSA V NAS YR
Sbjct: 514 DAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRK 573
Query: 406 KFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 464
FE L I N YR+I G + +E K+RV+ + W DW ++ + ++ L+ FL
Sbjct: 574 FFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 632
Score = 102 (41.0 bits), Expect = 2.7e-90, Sum P(2) = 2.7e-90
Identities = 35/154 (22%), Positives = 73/154 (47%)
Query: 625 KAFTKKEKNDPVLPASKWALED--DESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDV 682
+A + E + SKW L D +ES++E+ + + ++ V
Sbjct: 718 EAVDESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPV 777
Query: 683 DFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLE--ERGIKSSEEIEKKVAIHRK 740
+ S S M+EE+R KLR +E+ ++++++ LE +R K + +++V +R
Sbjct: 778 REEMTES-KFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRD 836
Query: 741 RLESEYGLADPNEDVSGNKRRDRRD-EILDSRKR 773
+L + +++ + RD++D E L+SR +
Sbjct: 837 KLLQR----EKEKELERERERDKKDKEKLESRSK 866
Score = 48 (22.0 bits), Expect = 1.3e-84, Sum P(2) = 1.3e-84
Identities = 31/184 (16%), Positives = 69/184 (37%)
Query: 582 ETNMEAESMGLSGWNGY------EEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDP 635
E+ +EA+++ S W + EE+E +Q S ++ E ++ + +
Sbjct: 722 ESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPVREE- 780
Query: 636 VLPASKWALEDDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDASIPVQPD 695
+ SK++ + S++++ +G P K + + D
Sbjct: 781 -MTESKFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQ---SFQEQVEHYRD 836
Query: 696 SGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDV 755
+ E+ ++L R + +E LE R K +E ++ ++R P+
Sbjct: 837 KLLQREKEKELERERERDKKDKEKLESRS-KDKKEKDECTPTRKERKRRHSTSPSPSRSS 895
Query: 756 SGNK 759
SG +
Sbjct: 896 SGRR 899
>MGI|MGI:1915208 [details] [associations]
symbol:U2surp "U2 snRNP-associated SURP domain containing"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
MGI:MGI:1915208 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
InterPro:IPR013170 Pfam:PF08312 CTD:23350 eggNOG:NOG307351
HOGENOM:HOG000286037 HOVERGEN:HBG093996 KO:K12842 OMA:SILQANS
OrthoDB:EOG47SSD9 EMBL:AC159895 EMBL:BC068265 EMBL:AK011588
EMBL:AK011796 IPI:IPI00411097 IPI:IPI00467507 IPI:IPI00830853
RefSeq:NP_001108449.1 RefSeq:NP_080752.2 UniGene:Mm.292742
UniGene:Mm.392755 HSSP:Q01085 ProteinModelPortal:Q6NV83 SMR:Q6NV83
STRING:Q6NV83 PhosphoSite:Q6NV83 PaxDb:Q6NV83 PRIDE:Q6NV83
Ensembl:ENSMUST00000078374 Ensembl:ENSMUST00000079659 GeneID:67958
KEGG:mmu:67958 UCSC:uc009rba.2 UCSC:uc009rbb.2 UCSC:uc009rbd.1
GeneTree:ENSGT00390000010687 InParanoid:Q6NV83 NextBio:326070
Bgee:Q6NV83 CleanEx:MM_2610101N10RIK Genevestigator:Q6NV83
Uniprot:Q6NV83
Length = 1029
Score = 818 (293.0 bits), Expect = 4.4e-90, Sum P(2) = 4.4e-90
Identities = 174/419 (41%), Positives = 244/419 (58%)
Query: 54 PGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGF 113
PGS D GDP TTNLY+GN++PQ++E L + FGRFGP+ASVKIMWPRT+EER R+RNCGF
Sbjct: 263 PGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGF 322
Query: 114 VAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVXXXXXXXXXX-XXGQMAIRSKEGATV 172
VAFMNR D + A + G ++ +E+K+GWGK+V + +
Sbjct: 323 VAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLP 382
Query: 173 ILSGP----SGP--PVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGG 226
+ P P P+ P + T + + V+ P +R+L +I + +V+ G
Sbjct: 383 FNAQPRERLKNPNAPMLPPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREG 442
Query: 227 CAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGR 286
FE IM R NP+F FLFE + H YY W+LYS QGD+ +WRTE F M
Sbjct: 443 PMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRMFKNGSF 502
Query: 287 WIPPAL-PTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIK 345
W PP L P E+E+ + S++ L + QRD+ E++LR LT ++ I
Sbjct: 503 WRPPPLNPYLHGMSEEQET-EAFVEEPSKKG----ALKEEQRDKLEEILRGLTPRKNDIG 557
Query: 346 EAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRT 405
+AM F L+NA+AA EIV+ +TESL++ +TP+P K+ARL LVSDVL+NSSA V NAS YR
Sbjct: 558 DAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRK 617
Query: 406 KFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 464
FE L I N YR+I G + +E K+RV+ + W DW ++ + ++ L+ FL
Sbjct: 618 FFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 676
Score = 100 (40.3 bits), Expect = 4.4e-90, Sum P(2) = 4.4e-90
Identities = 35/154 (22%), Positives = 72/154 (46%)
Query: 625 KAFTKKEKNDPVLPASKWALED--DESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDV 682
+A + E + SKW L D +ES++E+ + + ++ V
Sbjct: 762 EAVDESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPV 821
Query: 683 DFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLE--ERGIKSSEEIEKKVAIHRK 740
S S M+EE+R KLR +E+ ++++++ LE +R K + +++V +R
Sbjct: 822 REEATES-KFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRD 880
Query: 741 RLESEYGLADPNEDVSGNKRRDRRD-EILDSRKR 773
+L + +++ + RD++D E L+SR +
Sbjct: 881 KLLQR----EKEKELERERERDKKDKEKLESRSK 910
Score = 46 (21.3 bits), Expect = 2.2e-84, Sum P(2) = 2.2e-84
Identities = 31/184 (16%), Positives = 68/184 (36%)
Query: 582 ETNMEAESMGLSGWNGY------EEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDP 635
E+ +EA+++ S W + EE+E +Q S ++ E ++ + +
Sbjct: 766 ESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPVREEA 825
Query: 636 VLPASKWALEDDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDASIPVQPD 695
SK++ + S++++ +G P K + + D
Sbjct: 826 T--ESKFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQ---SFQEQVEHYRD 880
Query: 696 SGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDV 755
+ E+ ++L R + +E LE R K +E ++ ++R P+
Sbjct: 881 KLLQREKEKELERERERDKKDKEKLESRS-KDKKEKDECTPTRKERKRRHSTSPSPSRSS 939
Query: 756 SGNK 759
SG +
Sbjct: 940 SGRR 943
>UNIPROTKB|E7ET15 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 EMBL:AC018450
EMBL:AC026304 HGNC:HGNC:30855 ChiTaRS:u2surp IPI:IPI00966302
ProteinModelPortal:E7ET15 SMR:E7ET15 Ensembl:ENST00000493598
ArrayExpress:E7ET15 Bgee:E7ET15 Uniprot:E7ET15
Length = 1028
Score = 807 (289.1 bits), Expect = 3.9e-89, Sum P(2) = 3.9e-89
Identities = 172/419 (41%), Positives = 243/419 (57%)
Query: 54 PGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGF 113
PGS D GDP TTNLY+GN++PQ++E L + FGRFGP+ASVKIMWPRT+EER R+RNCGF
Sbjct: 262 PGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGF 321
Query: 114 VAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVXXXXXXXXXX-XXGQMAIRSKEGATV 172
VAFMNR D + A + G ++ +E+K+GWGK+V + +
Sbjct: 322 VAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPPSMMEHTLPPPPSGLP 381
Query: 173 ILSGP----SGP--PVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGG 226
+ P P P+ P + T + + V+ P +R+L +I + +V+ G
Sbjct: 382 FNAQPRERLKNPNAPMLPPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFVVREG 441
Query: 227 CAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGR 286
FE IM R NP+F FLFE + H YY W+LYS Q ++ +WRTE F M
Sbjct: 442 PMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQANSPTKWRTEDFRMFKNGSF 501
Query: 287 WIPPAL-PTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIK 345
W PP L P E+E+ + S++ L + QRD+ E++LR LT ++ I
Sbjct: 502 WRPPPLNPYLHGMSEEQET-EAFVEEPSKKG----ALKEEQRDKLEEILRGLTPRKNDIG 556
Query: 346 EAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRT 405
+AM F L+NA+AA EIV+ +TESL++ +TP+P K+ARL LVSDVL+NSSA V NAS YR
Sbjct: 557 DAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASYYRK 616
Query: 406 KFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 464
FE L I N YR+I G + +E K+RV+ + W DW ++ + ++ L+ FL
Sbjct: 617 FFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNIFL 675
Score = 102 (41.0 bits), Expect = 3.9e-89, Sum P(2) = 3.9e-89
Identities = 34/154 (22%), Positives = 73/154 (47%)
Query: 625 KAFTKKEKNDPVLPASKWALED--DESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDV 682
+A + E + SKW L D +ES++E+ + + ++ +
Sbjct: 761 EAVDESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPI 820
Query: 683 DFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLE--ERGIKSSEEIEKKVAIHRK 740
+ S S M+EE+R KLR +E+ ++++++ LE +R K + +++V +R
Sbjct: 821 KEEMTES-KFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRD 879
Query: 741 RLESEYGLADPNEDVSGNKRRDRRD-EILDSRKR 773
+L + +++ + RD++D E L+SR +
Sbjct: 880 KLLQR----EKEKELERERERDKKDKEKLESRSK 909
Score = 50 (22.7 bits), Expect = 1.2e-83, Sum P(2) = 1.2e-83
Identities = 32/184 (17%), Positives = 69/184 (37%)
Query: 582 ETNMEAESMGLSGWNGY------EEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDP 635
E+ +EA+++ S W + EE+E +Q S ++ E ++ K +
Sbjct: 765 ESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPIKEE- 823
Query: 636 VLPASKWALEDDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDASIPVQPD 695
+ SK++ + S++++ +G P K + + D
Sbjct: 824 -MTESKFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQ---SFQEQVEHYRD 879
Query: 696 SGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDV 755
+ E+ ++L R + +E LE R K +E ++ ++R P+
Sbjct: 880 KLLQREKEKELERERERDKKDKEKLESRS-KDKKEKDECTPTRKERKRRHSTSPSPSRSS 938
Query: 756 SGNK 759
SG +
Sbjct: 939 SGRR 942
Score = 43 (20.2 bits), Expect = 6.5e-83, Sum P(2) = 6.5e-83
Identities = 20/76 (26%), Positives = 29/76 (38%)
Query: 702 QRQKLRRLEVSLIEYRESLEERGIKS----SEEIEKKVAIHRKRLESEYGLADPNEDVSG 757
++++ RR S R S R +KS SE E+ H++ S D DVS
Sbjct: 921 RKERKRRHSTSPSPSRSSSGRR-VKSPSPKSERSERSERSHKESSRSRSSHKDSPRDVSK 979
Query: 758 NKRRDRRDEILDSRKR 773
+R R R
Sbjct: 980 KAKRSPSGSRTPKRSR 995
>ZFIN|ZDB-GENE-070912-400 [details] [associations]
symbol:u2surp "U2 snRNP-associated SURP domain
containing" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR000061 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102
PROSITE:PS50128 SMART:SM00360 SMART:SM00648
ZFIN:ZDB-GENE-070912-400 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
InterPro:IPR013170 Pfam:PF08312 EMBL:BX248497 eggNOG:NOG307351
HOGENOM:HOG000286037 HOVERGEN:HBG093996 OMA:SILQANS
OrthoDB:EOG47SSD9 GeneTree:ENSGT00390000010687 IPI:IPI00613709
UniGene:Dr.75427 Ensembl:ENSDART00000132651 Uniprot:B0S5J3
Length = 923
Score = 782 (280.3 bits), Expect = 7.2e-88, Sum P(2) = 7.2e-88
Identities = 186/483 (38%), Positives = 255/483 (52%)
Query: 37 SSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKI 96
SSR + D S PGS D GDP TTNLY+GN++PQ++E L + FGR+GP+ASVKI
Sbjct: 182 SSRRNRPSSVLDDSA--PGSHDVGDPTTTNLYLGNINPQMNEEMLCQEFGRYGPLASVKI 239
Query: 97 MWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVXXX------ 150
MWPRT+EER R+RNCGFVAFM R D + A + G ++ +E+K+GWGK V
Sbjct: 240 MWPRTDEERARERNCGFVAFMTRRDAERALKHLNGKMIMNFEMKLGWGKGVPIPPHPIYI 299
Query: 151 --XXXXXXXXXGQMAIRSKEGATVILSGPSG--PPVTTVPSQNSELVLTPNVPDIMVIPP 206
+ L P+ PP P E T + + V+ P
Sbjct: 300 PPSMMEHTLPPPPSGLPFNAQPKERLKNPNAAMPPP---PKCKEEFEKTLSQAIVKVVIP 356
Query: 207 EDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQ 266
+R+L +I + +V+ G FE IM R NPL+ FLFE S H YY W+LY+ Q
Sbjct: 357 TERNLLSLIHRMIEFVVREGPMFEAMIMNREINNPLYRFLFENQSPAHVYYRWKLYTILQ 416
Query: 267 GDTLQRWRTEPFIMITGSGRWIPPAL-P----TSKSPEHEKESGTTYAAGRSRRAEPERT 321
G++ +W+TE F M W PP L P T + EHE + S
Sbjct: 417 GESPTKWKTEDFRMFKNGSLWRPPPLNPYLHGTPEDEEHEDDDDEEICKKGS-------- 468
Query: 322 LTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVA 381
L D +RD+ E++LR LT +S I M F L +ADAA EIVE + ESL++ +TP+P K+A
Sbjct: 469 LKDEERDKLEELLRGLTPRKSDIAGGMFFCLTHADAAEEIVECIAESLSILKTPLPKKIA 528
Query: 382 RLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKV 441
RL LVSDVL+NSSA V NAS YR FE L I N Y++I G + +E K+RV+
Sbjct: 529 RLYLVSDVLYNSSAKVTNASYYRKFFETKLCQIFSDLNATYKTIQGHLQSENFKQRVMSC 588
Query: 442 LQVWSDWFLFSDAYVNGLRATFLRSGNSGVTPFHSICGDAPEIDKKNNSEDTCDLSKTNQ 501
+ W +W ++ D ++ L+ FL G + P PE+ +K D + +
Sbjct: 589 FRAWEEWAVYPDPFLIKLQNIFL--GLVSLDPEKEPEELVPELPEKVEDIDGAPIVEEEL 646
Query: 502 DTA 504
D A
Sbjct: 647 DGA 649
Score = 115 (45.5 bits), Expect = 7.2e-88, Sum P(2) = 7.2e-88
Identities = 32/130 (24%), Positives = 63/130 (48%)
Query: 640 SKWALED-DESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDASIPVQPDSGM 698
SKW + D E ++ K +A D S ++ V D + S
Sbjct: 718 SKWEIFDLPEESEKSKSSTKSEAEGKNSHKSSSAADQQSYSNPVREEYD--LKSAKFSET 775
Query: 699 NEEQRQKLRRLEVSLIEYRESLE--ERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDVS 756
+EE+R KLR +E+ ++++++ LE +R KS + I+++V ++R +L + +D
Sbjct: 776 SEEKRAKLREIELKVMKFQDELESGKRPKKSGQSIQEQVELYRDKLLQREKEKETEKDKE 835
Query: 757 GNKRRDRRDE 766
K ++R+D+
Sbjct: 836 KEKEKERKDK 845
Score = 47 (21.6 bits), Expect = 1.1e-80, Sum P(2) = 1.1e-80
Identities = 18/75 (24%), Positives = 35/75 (46%)
Query: 695 DSGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESE-----YGLA 749
+SG ++ + + +V L YR+ L +R + E +K+ ++R + E +
Sbjct: 798 ESGKRPKKSGQSIQEQVEL--YRDKLLQREKEKETEKDKEKEKEKERKDKEKSDVFHKEK 855
Query: 750 DPNEDVSGNKRRDRR 764
D +E G K + RR
Sbjct: 856 DKDESTPGRKEKKRR 870
>FB|FBgn0034572 [details] [associations]
symbol:CG9346 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102 PROSITE:PS50128
SMART:SM00360 SMART:SM00648 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
eggNOG:COG0724 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312 EMBL:AY069521
UniGene:Dm.2090 ProteinModelPortal:Q7K0X5 PaxDb:Q7K0X5 PRIDE:Q7K0X5
FlyBase:FBgn0034572 InParanoid:Q7K0X5 OrthoDB:EOG469P8S
ArrayExpress:Q7K0X5 Bgee:Q7K0X5 Uniprot:Q7K0X5
Length = 958
Score = 718 (257.8 bits), Expect = 1.4e-76, Sum P(2) = 1.4e-76
Identities = 166/455 (36%), Positives = 241/455 (52%)
Query: 36 PSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVK 95
PSS + S K GSFD GDP TTNLY+GNL+P++ E L+ FGR+GP+AS+K
Sbjct: 188 PSSSVSTTSQN-SSSSKESGSFDTGDPNTTNLYLGNLNPKISEQQLMEIFGRYGPLASIK 246
Query: 96 IMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVXXXXXXXX 155
IMWPR+EEE++R RNCGFVA+M+R D + A + G + YE+++GWGK+V
Sbjct: 247 IMWPRSEEEKQRGRNCGFVAYMSRKDAERALKTLNGRYIMGYEMRLGWGKTVPIMNTPIF 306
Query: 156 X-XXXGQMAIRSKEGATVILSGPSGPPVTTVPS-----------QNSELVLTPNVPDIMV 203
+M + + P +P +N E +L V + +
Sbjct: 307 TPQALLEMTLPPPPSGLPFNAQPPPSEADVLPKKNYKEFNQEDKENMERILAKCVVKVHI 366
Query: 204 IPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYS 263
P ++ + +VI + +V+ G FE IM R NPLF FLF+ S H YY W+L+S
Sbjct: 367 --PTEKAVLNVIHRMIEFVIREGPMFEALIMIREMENPLFAFLFDNESPAHIYYRWKLFS 424
Query: 264 FAQGDTLQRWRTEPFIMITGSGRWIPPALP--TSKSPEHEKESGTTYAAGRSRRAEPERT 321
QGDT WR E F M W PP T P+ +
Sbjct: 425 LLQGDTPNEWREEEFRMFKNGPVWKPPIANFYTQGMPDE-------LVVDPDAPVVHKGA 477
Query: 322 LTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVA 381
L+++QR+ ED++R LT ER++I +AM F +++ADAA EI E + ESL+ T K+A
Sbjct: 478 LSNAQRNRLEDLIRHLTPERARIGDAMIFCIEHADAADEICECIAESLSNINTLASKKIA 537
Query: 382 RLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKV 441
RL L+SD+LHN + V NAS +R E L DI ++ ++ Y +I R+ AE K RV V
Sbjct: 538 RLYLISDILHNCTVKVANASFFRKSVEKQLLDIFDNLHNYYLNIESRLKAEGFKSRVCNV 597
Query: 442 LQVWSDWFLFSDAYVNGLRATFLRSGNSGVTPFHS 476
++ W +W ++ ++ L A FL G V P ++
Sbjct: 598 IRTWEEWTIYPKDFMAQLTAKFL--GKPYVKPVNN 630
Score = 72 (30.4 bits), Expect = 1.4e-76, Sum P(2) = 1.4e-76
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 700 EEQRQKLRRLEVSLIEYRESLE--ERGIKSSEEIEKKVAIHRKRL 742
+E RQKLR +E I+Y++ LE +R ++ + ++V RKRL
Sbjct: 781 DEMRQKLRDIESKAIQYQDELESGKRRLEPGWSVPEQVEQFRKRL 825
>ZFIN|ZDB-GENE-070410-141 [details] [associations]
symbol:zgc:163098 "zgc:163098" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
ZFIN:ZDB-GENE-070410-141 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
InterPro:IPR013170 Pfam:PF08312 GeneTree:ENSGT00390000010687
EMBL:BX927261 IPI:IPI00997649 Ensembl:ENSDART00000122919
ArrayExpress:F1QSP9 Bgee:F1QSP9 Uniprot:F1QSP9
Length = 942
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 198/573 (34%), Positives = 289/573 (50%)
Query: 57 FDDGD--PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 114
FDD P TTNLY+G ++P++ E L + FG++GP+ASVKIMWPRTEEER R N GFV
Sbjct: 177 FDDDPAVPNTTNLYIGCINPKMTEEMLCKEFGKYGPLASVKIMWPRTEEERTRVTNRGFV 236
Query: 115 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVXXXXXXXXXXXXGQMAIRSKEGATVIL 174
AFM R D + A + G V +E+K+GWGK+V G + T
Sbjct: 237 AFMTRKDAERALAALDGKTVMGFEMKLGWGKAVRIPPQPLYTPI-GVLK-------TTAP 288
Query: 175 SGPSGPPVTTVP--------------SQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLAL 220
PSG P P SQ+ +VIPPE R+L +I +
Sbjct: 289 PPPSGLPFNAQPRDRFRNDFTKPRSRSQDDFYKTLSEAVVTVVIPPE-RNLLGLIHRMIE 347
Query: 221 YVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIM 280
+V+ G FE IM R + NP F FLF+ S+EH YY W+LYS QG+ WRT F M
Sbjct: 348 FVVREGPMFEAMIMNREKNNPDFRFLFDNKSQEHVYYRWKLYSILQGENPNNWRTSSFRM 407
Query: 281 ITGSGRWIPPALPTSKSPEHEKESGTTYAAGRSRRAEPER-TLTDSQRDEFEDMLRALTL 339
G W PP L + E E A+ S EP++ L R++ E +LR LT
Sbjct: 408 FRGGSLWKPPLLNPYLHGDEEPEE----ASFPSPEEEPKKGQLKSEHREKLEVLLRGLTP 463
Query: 340 ERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKN 399
R +I +AM F L+ A+AA EIV +TESL++ TP+ K+ARL L+SD+L+NS A V N
Sbjct: 464 RRDEIGDAMLFCLERAEAAEEIVSCITESLSIAHTPLQKKIARLYLISDILYNSCAKVAN 523
Query: 400 ASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGL 459
AS YR FE LP+I ++ YR+I R+ AE K+R++ + W DW ++ D+++ L
Sbjct: 524 ASYYRKFFETKLPEIFGDISEAYRNIQARLQAEQFKQRIMGCFRAWEDWAVYPDSFLIQL 583
Query: 460 RATFLRSGNSGVTPFHSICGDAPEIDKKNNSEDTCDLSKTNQD-TALAMGKGAAI----K 514
+ FL G P ++P++D D L + D T L G+ +
Sbjct: 584 QNIFLGLIKPGEEP------ESPDLD--GAPLDGVPLDRGEIDGTPLDDLDGSPLTWDPS 635
Query: 515 ELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSG 574
+ +P+ +++ N + + G +L + +E DD +S+ + S+
Sbjct: 636 AIDGVPVDDIDGVPLGNSVDDIDGVPFDEGSDKTLPTVALSK-WEKVDDSESSGTISALT 694
Query: 575 RYSRGWKETNMEAESMGLSGWNGYEEDEKLSQA 607
+ R W +++ E S GL +G + D +A
Sbjct: 695 AFHR-WNDSDNEVNSGGLKENSG-DSDTSSDEA 725
>UNIPROTKB|C9JB80 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000061 Pfam:PF01805 PROSITE:PS50128
SMART:SM00648 GO:GO:0005634 GO:GO:0003723 GO:GO:0006396
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 InterPro:IPR013170 Pfam:PF08312
EMBL:AC018450 EMBL:AC026304 IPI:IPI00790699 HGNC:HGNC:30855
HOGENOM:HOG000286037 ChiTaRS:u2surp ProteinModelPortal:C9JB80
SMR:C9JB80 STRING:C9JB80 PRIDE:C9JB80 Ensembl:ENST00000480029
ArrayExpress:C9JB80 Bgee:C9JB80 Uniprot:C9JB80
Length = 488
Score = 495 (179.3 bits), Expect = 1.4e-55, Sum P(2) = 1.4e-55
Identities = 105/245 (42%), Positives = 146/245 (59%)
Query: 221 YVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIM 280
+V+ G FE IM R NP+F FLFE + H YY W+LYS QGD+ +WRTE F M
Sbjct: 4 FVVREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRM 63
Query: 281 ITGSGRWIPPAL-PTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTL 339
W PP L P E+E+ + S++ L + QRD+ E++LR LT
Sbjct: 64 FKNGSFWRPPPLNPYLHGMSEEQET-EAFVEEPSKKG----ALKEEQRDKLEEILRGLTP 118
Query: 340 ERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKN 399
++ I +AM F L+NA+AA EIV+ +TESL++ +TP+P K+ARL LVSDVL+NSSA V N
Sbjct: 119 RKNDIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVAN 178
Query: 400 ASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGL 459
AS YR FE L I N YR+I G + +E K+RV+ + W DW ++ + ++ L
Sbjct: 179 ASYYRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKL 238
Query: 460 RATFL 464
+ FL
Sbjct: 239 QNIFL 243
Score = 102 (41.0 bits), Expect = 1.4e-55, Sum P(2) = 1.4e-55
Identities = 34/154 (22%), Positives = 73/154 (47%)
Query: 625 KAFTKKEKNDPVLPASKWALED--DESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDV 682
+A + E + SKW L D +ES++E+ + + ++ +
Sbjct: 329 EAVDESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPI 388
Query: 683 DFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLE--ERGIKSSEEIEKKVAIHRK 740
+ S S M+EE+R KLR +E+ ++++++ LE +R K + +++V +R
Sbjct: 389 KEEMTES-KFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQSFQEQVEHYRD 447
Query: 741 RLESEYGLADPNEDVSGNKRRDRRD-EILDSRKR 773
+L + +++ + RD++D E L+SR +
Sbjct: 448 KLLQR----EKEKELERERERDKKDKEKLESRSK 477
Score = 41 (19.5 bits), Expect = 3.6e-49, Sum P(2) = 3.6e-49
Identities = 28/157 (17%), Positives = 59/157 (37%)
Query: 582 ETNMEAESMGLSGWNGY------EEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDP 635
E+ +EA+++ S W + EE+E +Q S ++ E ++ K +
Sbjct: 333 ESELEAQAVTTSKWELFDQHEESEEEENQNQEEESEDEEDTQSSKSEEHHLYSNPIKEE- 391
Query: 636 VLPASKWALEDDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDASIPVQPD 695
+ SK++ + S++++ +G P K + + D
Sbjct: 392 -MTESKFSKYSEMSEEKRAKLREIELKVMKFQDELESGKRPKKPGQ---SFQEQVEHYRD 447
Query: 696 SGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIE 732
+ E+ ++L R + +E LE R E+ E
Sbjct: 448 KLLQREKEKELERERERDKKDKEKLESRSKDKKEKDE 484
>WB|WBGene00015581 [details] [associations]
symbol:C07H6.4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR000061 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805 PROSITE:PS50102
PROSITE:PS50128 SMART:SM00360 SMART:SM00648 GO:GO:0009792
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
HSSP:P19339 InterPro:IPR008942 SUPFAM:SSF48464 EMBL:FO080423
InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
eggNOG:NOG307351 KO:K12842 GeneTree:ENSGT00390000010687
RefSeq:NP_498648.1 ProteinModelPortal:Q95YF1 SMR:Q95YF1
STRING:Q95YF1 PaxDb:Q95YF1 EnsemblMetazoa:C07H6.4 GeneID:176063
KEGG:cel:CELE_C07H6.4 UCSC:C07H6.4 CTD:176063 WormBase:C07H6.4
HOGENOM:HOG000018806 InParanoid:Q95YF1 OMA:AEGFKTR NextBio:890952
Uniprot:Q95YF1
Length = 933
Score = 220 (82.5 bits), Expect = 3.3e-51, Sum P(4) = 3.3e-51
Identities = 44/91 (48%), Positives = 62/91 (68%)
Query: 57 FDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAF 116
FDD DP TTN+YV N+ V E+ LL TFG FGP+A++KI++PR+EEERRR C FVAF
Sbjct: 193 FDD-DPYTTNVYVSNIPHSVTEDDLLFTFGSFGPLAALKILYPRSEEERRRPHICAFVAF 251
Query: 117 MNRADGQAAKDEMQGVVVYEYELKIGWGKSV 147
M+RAD E++ ++V ++ + + V
Sbjct: 252 MSRADVDRFMAEVRVIIVRNEPIRFAFARPV 282
Score = 217 (81.4 bits), Expect = 3.3e-51, Sum P(4) = 3.3e-51
Identities = 59/204 (28%), Positives = 109/204 (53%)
Query: 295 SKSPEHEKESGTTYAAGRSRRAEPERT----LTDSQRDEFEDMLRALTLERSQIKEAMGF 350
S + + E++ R RR + E+ ++D +RD+ E ++R LT E++ I M +
Sbjct: 491 SDAEKEERKMRREEEKERKRREKNEKKRNNRMSDKRRDKLETLIRELTPEKTSIAATMVW 550
Query: 351 ALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNS-SAPVKNASAYRTKFEA 409
+ NA A EI E + +SLT+++ P+ K++RL L++D+L N V++ YR+ FEA
Sbjct: 551 CIQNAKYAAEICECVYDSLTIEDIPLYKKISRLYLINDILSNCVQRNVRDVFLYRSHFEA 610
Query: 410 TLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLF-SDAYVNGLRATFLRSGN 468
L I + YR+I RI E K+RV+ V + + + ++ +D ++ + FL G
Sbjct: 611 LLEKIFVAVGKAYRAIPSRIKQEQFKQRVMCVFRNFEEMAVYPTDKLIHN-QNVFL--GL 667
Query: 469 SGVTPFHSICGDAPEIDKKNNSED 492
+ S D +++++ + ED
Sbjct: 668 IEIGKEKSEERDNQKLEEEEDEED 691
Score = 214 (80.4 bits), Expect = 3.3e-51, Sum P(4) = 3.3e-51
Identities = 46/118 (38%), Positives = 65/118 (55%)
Query: 180 PPVTTVPSQN-------SELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQA 232
PP+ +P++ +EL+ + +V+PP DR L V+D +A+YV+ G FE
Sbjct: 329 PPMHALPTKGQYGYEDFTELIRNSQIR--VVVPP-DRKLVRVMDRMAVYVVTEGPQFEAM 385
Query: 233 IMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPP 290
I NP+F FL++ S H YY WR+YS QGDT++ WR PF M WIPP
Sbjct: 386 ICAEEFQNPMFQFLWDNTSALHVYYRWRIYSLLQGDTIEEWRRTPFRMFENGSWWIPP 443
Score = 65 (27.9 bits), Expect = 3.3e-51, Sum P(4) = 3.3e-51
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 694 PDSG--MNEEQRQKLRRLEVSLI--EYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLA 749
PD+ ++E +R ++ ++E +L E ++S +E+ + SE+ EKK RKR S
Sbjct: 836 PDAKRKVDEFRRCEMEKVEKALRSGESKKS-DEKSERKSEKKEKKRDKERKRSRSRSRDR 894
Query: 750 DPNE---DVSGNKRRDR-RDEILDSRKR 773
D + D S ++ RDR RD D R R
Sbjct: 895 DRDRSRRDRSRDRSRDRDRDRDRDRRDR 922
Score = 50 (22.7 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 718 ESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDVSGNKRRDRRDEILDS 770
ES + R +E+ E+K+ R+ E E + NE N+ D+R + L++
Sbjct: 483 ESSKNRRNSDAEKEERKM---RREEEKERKRREKNEKKRNNRMSDKRRDKLET 532
Score = 45 (20.9 bits), Expect = 3.6e-31, Sum P(3) = 3.6e-31
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 711 VSLIEY-RESLEERGIKSSEEIEKKVAIHRKRLESEYGLADPNEDV 755
+ LIE +E EER + EE E + + LE E + + NE +
Sbjct: 665 LGLIEIGKEKSEERDNQKLEEEEDEEDLDGVPLEEEKSVQNMNESL 710
Score = 43 (20.2 bits), Expect = 5.8e-31, Sum P(3) = 5.8e-31
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 295 SKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFED 332
S+ E +++ + RSR + +R+ D RD D
Sbjct: 873 SEKKEKKRDKERKRSRSRSRDRDRDRSRRDRSRDRSRD 910
Score = 37 (18.1 bits), Expect = 2.4e-30, Sum P(3) = 2.4e-30
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 752 NEDVSGNKRRDRRDEILDSRKR 773
N D +R+ RR+E + ++R
Sbjct: 490 NSDAEKEERKMRREEEKERKRR 511
>DICTYBASE|DDB_G0281687 [details] [associations]
symbol:DDB_G0281687 "U2 snRNP-associated SURP
motif-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
dictyBase:DDB_G0281687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 EMBL:AAFI02000042 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006569 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 eggNOG:NOG307351 RefSeq:XP_640578.4
ProteinModelPortal:Q54TL3 EnsemblProtists:DDB0252764 GeneID:8623186
KEGG:ddi:DDB_G0281687 OMA:GINYCAI Uniprot:Q54TL3
Length = 951
Score = 487 (176.5 bits), Expect = 5.1e-43, Sum P(2) = 5.1e-43
Identities = 127/412 (30%), Positives = 210/412 (50%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRN-CGFVAFMNRADGQ 123
T L++G LS + +E + F +G I S+KI+ P+ E++R+R N C V + D
Sbjct: 382 TTLFLGTLSVESNEQVIDELFSTYGIINSIKIITPKNEDDRKRGINYCAIVTYQFPRDAH 441
Query: 124 AAKDEMQGVVVYEYELKIGWGKSVXXXXXXXXXXXXGQMAIRSKEGATVILSGPSGPPVT 183
A ++ G + EL+IGW K + + G
Sbjct: 442 NAMKDLTGKKLLGRELRIGWAKIQVKQPRNNEINNFNNYNNNNN-----FFNNSHG---- 492
Query: 184 TVPSQNSELVLTPNVP-DIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPL 242
+ ++N+ N P I V P++ ++ +ID LA YV G FE+ I ER N
Sbjct: 493 -MGNKNN------NGPIKIQVQIPQNLFIKSIIDNLAYYVSKEGYPFEKLIQEREYSNMN 545
Query: 243 FNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPALPTSKSPEHEK 302
F FLF+ S ++ YY W++YS GDT W+ +P MI +IPP + + + ++
Sbjct: 546 FQFLFDHQSDDYYYYSWKVYSLINGDTKTNWKLKPIEMIKDYLIFIPPTIDDQQLQQQQQ 605
Query: 303 ESGTTYAAGRSRRAE----PERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAA 358
+ + S A ++ L S R +FE+ ++ LT +R ++ E M ++DN+D +
Sbjct: 606 QQQQPHIQNPSTIASNSNIQQQPLPISLRVKFEEYVKNLTAQREKVCELMVMSIDNSDYS 665
Query: 359 GEIVEVLTES-------LTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATL 411
+IV+++ S L KE+ I +K+++L L+SD+LHN + VKN S+YR FE L
Sbjct: 666 SDIVDIIVGSFFDSISNLNGKES-INSKISKLYLISDILHNCTVNVKNVSSYRGLFENKL 724
Query: 412 PDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATF 463
+ ++ + YRSI GR++A+ KE++ KVL W L+S +++ GLR TF
Sbjct: 725 ALVFQNLSSTYRSIGGRVSAQNFKEKITKVLNSWDKSSLYSKSFLLGLRFTF 776
Score = 38 (18.4 bits), Expect = 5.1e-43, Sum P(2) = 5.1e-43
Identities = 7/38 (18%), Positives = 21/38 (55%)
Query: 539 REMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSGRY 576
R ++ S + + +R +E+ +++ +++ Q+ RY
Sbjct: 913 RATLIKAAASQKISSLKRDFEVGNNINNSNRQTKQQRY 950
>UNIPROTKB|E7EW00 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC018450 EMBL:AC026304 HGNC:HGNC:30855
ChiTaRS:u2surp IPI:IPI00979562 ProteinModelPortal:E7EW00 SMR:E7EW00
Ensembl:ENST00000488497 UCSC:uc011bnj.1 ArrayExpress:E7EW00
Bgee:E7EW00 Uniprot:E7EW00
Length = 425
Score = 346 (126.9 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 59/94 (62%), Positives = 76/94 (80%)
Query: 54 PGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGF 113
PGS D GDP TTNLY+GN++PQ++E L + FGRFGP+ASVKIMWPRT+EER R+RNCGF
Sbjct: 263 PGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGF 322
Query: 114 VAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSV 147
VAFMNR D + A + G ++ +E+K+GWGK+V
Sbjct: 323 VAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAV 356
>UNIPROTKB|H0Y8D9 [details] [associations]
symbol:U2SURP "U2 snRNP-associated SURP motif-containing
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC018450 EMBL:AC026304 HGNC:HGNC:30855
ChiTaRS:u2surp Ensembl:ENST00000463563 Bgee:H0Y8D9 Uniprot:H0Y8D9
Length = 439
Score = 346 (126.9 bits), Expect = 1.3e-30, P = 1.3e-30
Identities = 59/94 (62%), Positives = 76/94 (80%)
Query: 54 PGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGF 113
PGS D GDP TTNLY+GN++PQ++E L + FGRFGP+ASVKIMWPRT+EER R+RNCGF
Sbjct: 265 PGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGF 324
Query: 114 VAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSV 147
VAFMNR D + A + G ++ +E+K+GWGK+V
Sbjct: 325 VAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAV 358
>DICTYBASE|DDB_G0293252 [details] [associations]
symbol:DDB_G0293252 "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
dictyBase:DDB_G0293252 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AAFI02000200 GO:GO:0006396 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 eggNOG:NOG314315 RefSeq:XP_629218.1
ProteinModelPortal:Q54C48 GeneID:8629100 KEGG:ddi:DDB_G0293252
InParanoid:Q54C48 OMA:FGKVENA Uniprot:Q54C48
Length = 691
Score = 185 (70.2 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 60/258 (23%), Positives = 114/258 (44%)
Query: 205 PPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSF 264
PP+ + +ID LA YV G FE E+ R NPLF+FL + S + YY W+L++
Sbjct: 432 PPQSPQEQQIIDKLAEYVARTGPRFETFTFEKQRNNPLFSFL-KPRSPANDYYKWKLWTI 490
Query: 265 AQGDTLQRWRTEPFIMITGSGRWIPPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTD 324
DT + S + + P+ + + + P L +
Sbjct: 491 RNPDTHSSNNDTNNETQSPSNQQENQQQQQQQQPQQPPQQENQQQ--QQQINYPSSFLNE 548
Query: 325 SQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLM 384
++ EF+D+L LT + + + + + + + EI+ ++ + K+ L
Sbjct: 549 NEVKEFKDILEKLTPSKPSVTNCKNWIMSHTENSLEIISIIVVNFQTISLTFAQKLNILH 608
Query: 385 LVSDVLHNSSAPVKNASAYRTK-FEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQ 443
+++D LHNS + + + + F ++ D + F + S TG + +E+VLKVL
Sbjct: 609 VLNDCLHNSVTKRSSPNDWMSDDFARSIKDYLP-F--IIGS-TGSGESPDNQEKVLKVLS 664
Query: 444 VWSDWFLFSDAYVNGLRA 461
+W + + ++ LR+
Sbjct: 665 IWDNQKFYPKDFIESLRS 682
Score = 96 (38.9 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 31/126 (24%), Positives = 54/126 (42%)
Query: 22 NIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLP--GSFDDGDPQTTNLYVGNLSPQVDEN 79
N++G +F L L + + P G+ + T NL++GN++ V
Sbjct: 231 NLNGTIFRGLPLKLGFGKVENAPQANFGGGRFDQYNKPHQEETPTKNLWLGNVNSNVSYE 290
Query: 80 FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139
L + F +FG + +++I+ R C FV F AA++ + G +V L
Sbjct: 291 LLKQIFDQFGNVDTIRIL---------HGRGCAFVNFFTVESAAAARNGLNGTMVCGMPL 341
Query: 140 KIGWGK 145
KI + K
Sbjct: 342 KINFRK 347
Score = 85 (35.0 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 25/102 (24%), Positives = 48/102 (47%)
Query: 44 PDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEE 103
P+ P + G+ +P T ++ GN++P+ E + F +FG + ++KI+ P
Sbjct: 157 PNQMAPHYQNKGAGGQLEP-TKIVWAGNINPESTEEEVRHLFSQFGYLQAIKII-PN--- 211
Query: 104 ERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGK 145
+ C F+ F + A+ + G + LK+G+GK
Sbjct: 212 -----KQCAFITFADVNCAIQAQFNLNGTIFRGLPLKLGFGK 248
>UNIPROTKB|E7ETC0 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI01012546 ProteinModelPortal:E7ETC0 SMR:E7ETC0
Ensembl:ENST00000497671 ArrayExpress:E7ETC0 Bgee:E7ETC0
Uniprot:E7ETC0
Length = 135
Score = 127 (49.8 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 33/86 (38%), Positives = 43/86 (50%)
Query: 58 DDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFM 117
DDG P+T LYVGNLS V E +L+ F + GP S K++ T + C FV F
Sbjct: 4 DDGQPRT--LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPY----C-FVEFY 56
Query: 118 NRADGQAAKDEMQGVVVYEYELKIGW 143
D AA M G + E+K+ W
Sbjct: 57 EHRDAAAALAAMNGRKILGKEVKVNW 82
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 147 (56.8 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 55 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 114
GS DGD T ++VG L +V + L ++F +FG + SVKI P + CGFV
Sbjct: 285 GSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKI--PAG-------KGCGFV 335
Query: 115 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 146
F +R+ Q A ++ G ++ + +++ WG+S
Sbjct: 336 QFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRS 367
>UNIPROTKB|F1NDX1 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0044325 "ion channel binding"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0051209 "release of sequestered calcium ion into
cytosol" evidence=IEA] [GO:0051533 "positive regulation of NFAT
protein import into nucleus" evidence=IEA] InterPro:IPR000061
Pfam:PF01805 PROSITE:PS50128 SMART:SM00648 GO:GO:0048471
GO:GO:0008285 GO:GO:0051209 GO:GO:0003723 GO:GO:0006396
GO:GO:0051533 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 GeneTree:ENSGT00600000084415
EMBL:AADN02061998 IPI:IPI00821225 Ensembl:ENSGALT00000006062
ArrayExpress:F1NDX1 Uniprot:F1NDX1
Length = 398
Score = 128 (50.1 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 202 MVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 261
M +PP+D+ LR+VID LA +V G FE+ ME+ + NP F+FLF G + YY ++L
Sbjct: 3 MPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKENPKFSFLF--GGDFYGYYKYKL 60
Score = 63 (27.2 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 32/173 (18%), Positives = 76/173 (43%)
Query: 302 KESGTTYAAGRSRRAEPERTLTDSQRD--EFEDMLRAL--TLERSQIKEAMGFALDNADA 357
++ T A + + ++ L ++Q D EF+++L+ + T + I + NA +
Sbjct: 126 RQEQVTSAVALAIEQQMQKVLEETQLDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKS 185
Query: 358 AG--EIVEV-LTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDI 414
E++ L +T + ++ + L++DVLH+ K A R A +
Sbjct: 186 PAHCELMAGHLRNRITAEGAHFELRLHLIYLINDVLHHCQR--KQA---RDLLAALQKVV 240
Query: 415 MESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSG 467
+ + + ++ E ++++ ++LQ+W F ++ + L++ L G
Sbjct: 241 VPIYCTSFLAVE-----EDKQQKIARLLQLWEKNGYFDESIIQQLQSPALGLG 288
>UNIPROTKB|J3QK89 [details] [associations]
symbol:CHERP "Calcium homeostasis endoplasmic reticulum
protein" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0003723 GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 EMBL:AC008764 HGNC:HGNC:16930 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SUPFAM:SSF109905 PROSITE:PS51391
ProteinModelPortal:J3QK89 Ensembl:ENST00000198939 OMA:FEGPWNS
Uniprot:J3QK89
Length = 927
Score = 131 (51.2 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 35/100 (35%), Positives = 55/100 (55%)
Query: 202 MVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 261
M +PP+D+ LR+VID LA +V G FE+ ME+ + NP F+FLF G + ++YY +L
Sbjct: 3 MPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKL 60
Query: 262 YSFAQGDTLQRWRT---EPFIMITGSGRWIPPALPTSKSP 298
+ Q + + +T EP + + PP P + P
Sbjct: 61 -ALEQQQLICKQQTPELEPAATMPPLPQ--PPLAPAAPIP 97
Score = 73 (30.8 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 34/181 (18%), Positives = 80/181 (44%)
Query: 302 KESGTTYAAGRSRRAEPERTLTDSQRD--EFEDMLRAL--TLERSQIKEAMGFALDNADA 357
++ T A + + ++ L ++Q D EF+++L+ + T + I + NA +
Sbjct: 127 RQEQVTAAVAHAVEQQMQKLLEETQLDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKS 186
Query: 358 AG--EIVEV-LTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDI 414
E++ L +T ++ + L++DVLH+ + + + + +A ++
Sbjct: 187 PPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHWALTRGKSLPHSQRKQAR--EL 244
Query: 415 MESFNDLYRSI--TGRITAEALKE-RVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGV 471
+ + + I T + E K+ ++ ++LQ+W F D+ + L++ L G
Sbjct: 245 LAALQKVVVPIYCTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQA 304
Query: 472 T 472
T
Sbjct: 305 T 305
Score = 39 (18.8 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 580 WKETN--MEAESMGLSGWNGYEE 600
W ++ M E G GWNG +
Sbjct: 466 WNNSHEGMWGEQRGDPGWNGQRD 488
>ZFIN|ZDB-GENE-070615-33 [details] [associations]
symbol:sugp1 "SURP and G patch domain containing 1"
species:7955 "Danio rerio" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 ZFIN:ZDB-GENE-070615-33
GO:GO:0003723 GO:GO:0006396 SUPFAM:SSF109905
GeneTree:ENSGT00410000025695 EMBL:FP074868 IPI:IPI00931429
Ensembl:ENSDART00000114286 Bgee:E7FGI4 Uniprot:E7FGI4
Length = 604
Score = 144 (55.7 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 180 PPVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRG 239
P V + P E + +I V PPED R +I +A ++ +GG ++ M+ R
Sbjct: 162 PSVFSSPDDEDEDEDDTHFLEIKVSPPEDADQRLIIQKMAAFIAEGGVELQKKAMQDYRD 221
Query: 240 NPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQ 271
+P F+FLF+ GSKEH YY RL + + Q
Sbjct: 222 DPTFSFLFDKGSKEHLYYRKRLAELRREQSAQ 253
>TAIR|locus:2023903 [details] [associations]
symbol:ATE1 "ATPase E1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 UniGene:At.66943
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK228412 IPI:IPI00541371
RefSeq:NP_563931.2 ProteinModelPortal:Q0WRA3 SMR:Q0WRA3
STRING:Q0WRA3 PaxDb:Q0WRA3 PRIDE:Q0WRA3 EnsemblPlants:AT1G13690.1
GeneID:837930 KEGG:ath:AT1G13690 TAIR:At1g13690 InParanoid:Q0WRA3
OMA:AQPIWAD PhylomeDB:Q0WRA3 ProtClustDB:CLSN2690943
Genevestigator:Q0WRA3 Uniprot:Q0WRA3
Length = 177
Score = 126 (49.4 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 30/81 (37%), Positives = 43/81 (53%)
Query: 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 122
Q LYVG L+ +V+E+ L F FG I VK P ++ ++ R+ GFV F+ R D
Sbjct: 11 QKNTLYVGGLADEVNESILHAAFIPFGDIKDVKT--P-LDQANQKHRSFGFVTFLEREDA 67
Query: 123 QAAKDEMQGVVVYEYELKIGW 143
AA D M G +Y L + +
Sbjct: 68 SAAMDNMDGAELYGRVLTVNY 88
>UNIPROTKB|F1S9W3 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051533 "positive regulation of NFAT protein import
into nucleus" evidence=IEA] [GO:0051209 "release of sequestered
calcium ion into cytosol" evidence=IEA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA] [GO:0044325 "ion channel
binding" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0048471 GO:GO:0008285 GO:GO:0051209 GO:GO:0003723
GO:GO:0006396 GO:GO:0051533 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818
SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
GeneTree:ENSGT00600000084415 EMBL:CU929691
Ensembl:ENSSSCT00000015139 OMA:THELPTH Uniprot:F1S9W3
Length = 852
Score = 130 (50.8 bits), Expect = 7.5e-06, Sum P(3) = 7.5e-06
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 202 MVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 261
M +PP+D+ LR+VID LA +V G FE+ ME+ + NP F+FLF G + ++YY +L
Sbjct: 3 MPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKL 60
Score = 66 (28.3 bits), Expect = 7.5e-06, Sum P(3) = 7.5e-06
Identities = 37/179 (20%), Positives = 77/179 (43%)
Query: 302 KESGTTYAAGRSRRAEPERTLTDSQRD--EFEDMLRAL--TLERSQIKEAMGFALDNADA 357
++ T A + + ++ L ++Q D EF+++L+ + T + I + NA +
Sbjct: 127 RQEQVTAAVAHAVEQQMQKLLEETQLDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKS 186
Query: 358 AG--EIVEV-LTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDI 414
E++ L +T ++ + L++DVLH+ K A + A L +
Sbjct: 187 PPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQR--KQAR----ELLAALQKV 240
Query: 415 MESFNDLYRSITGRITAEALKE-RVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVT 472
+ +Y T + E K+ ++ ++LQ+W F D+ + L++ L G T
Sbjct: 241 VVP---IY--CTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQAT 294
Score = 39 (18.8 bits), Expect = 7.5e-06, Sum P(3) = 7.5e-06
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 580 WKETN--MEAESMGLSGWNGYEE 600
W ++ M E G GWNG +
Sbjct: 455 WNNSHEGMWGEQRGDPGWNGQRD 477
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 119 (46.9 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 32/81 (39%), Positives = 43/81 (53%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
T+L + NLS Q N L RTF R+G I V I PR ++ R+ + GFV F R D +
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHI--PR-DKYSRQSKGFGFVRFYERRDAEH 75
Query: 125 AKDEMQGVVVYEYELKIGWGK 145
A D G +V EL++ K
Sbjct: 76 ALDRTDGKLVDGRELRVTLAK 96
Score = 48 (22.0 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 707 RRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLES-EYGLA-DPNEDVSGNKR---R 761
R L V+L +Y +ERG + ++ R+R S Y + P S + R
Sbjct: 88 RELRVTLAKYDRPSDERGGRGGGGGRRRSRSPRRRSRSPRYSRSRSPRRSRSRTRSPPSR 147
Query: 762 DRRD 765
DRRD
Sbjct: 148 DRRD 151
Score = 44 (20.5 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 295 SKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRD 328
S+SP S Y+ RS R RT + RD
Sbjct: 116 SRSPRRRSRS-PRYSRSRSPRRSRSRTRSPPSRD 148
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 119 (46.9 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 32/81 (39%), Positives = 43/81 (53%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
T+L + NLS Q N L RTF R+G I V I PR ++ R+ + GFV F R D +
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHI--PR-DKYSRQSKGFGFVRFYERRDAEH 75
Query: 125 AKDEMQGVVVYEYELKIGWGK 145
A D G +V EL++ K
Sbjct: 76 ALDRTDGKLVDGRELRVTLAK 96
Score = 48 (22.0 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 707 RRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLES-EYGLA-DPNEDVSGNKR---R 761
R L V+L +Y +ERG + ++ R+R S Y + P S + R
Sbjct: 88 RELRVTLAKYDRPSDERGGRGGGGGRRRSRSPRRRSRSPRYSRSRSPRRSRSRTRSPPSR 147
Query: 762 DRRD 765
DRRD
Sbjct: 148 DRRD 151
Score = 44 (20.5 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 295 SKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRD 328
S+SP S Y+ RS R RT + RD
Sbjct: 116 SRSPRRRSRS-PRYSRSRSPRRSRSRTRSPPSRD 148
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 138 (53.6 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 31/92 (33%), Positives = 47/92 (51%)
Query: 55 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 114
GS DG+ + ++VG L V E L++ F FG + SVKI P + CGFV
Sbjct: 317 GSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKI--PVG-------KGCGFV 367
Query: 115 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 146
F NR + A + G V+ + +++ WG+S
Sbjct: 368 QFANRQSAEEAIGNLNGTVIGKNTVRLSWGRS 399
>UNIPROTKB|Q8IWX8 [details] [associations]
symbol:CHERP "Calcium homeostasis endoplasmic reticulum
protein" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IDA] [GO:0051209 "release of
sequestered calcium ion into cytosol" evidence=IMP] [GO:0051533
"positive regulation of NFAT protein import into nucleus"
evidence=IMP] [GO:0044325 "ion channel binding" evidence=IPI]
[GO:0033017 "sarcoplasmic reticulum membrane" evidence=ISS]
[GO:0007399 "nervous system development" evidence=TAS] [GO:0006874
"cellular calcium ion homeostasis" evidence=IDA] [GO:0008285
"negative regulation of cell proliferation" evidence=IDA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
EMBL:AF536542 GO:GO:0048471 GO:GO:0008285 GO:GO:0007399
GO:GO:0051209 GO:GO:0003723 GO:GO:0006396 GO:GO:0051533
Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464 GO:GO:0033017
EMBL:AC008764 EMBL:BC021294 EMBL:Y08265 EMBL:U94836 IPI:IPI00333010
RefSeq:NP_006378.3 UniGene:Hs.740364 HSSP:Q8CH02
ProteinModelPortal:Q8IWX8 SMR:Q8IWX8 IntAct:Q8IWX8
MINT:MINT-1637299 STRING:Q8IWX8 PhosphoSite:Q8IWX8 DMDM:296439404
PaxDb:Q8IWX8 PRIDE:Q8IWX8 Ensembl:ENST00000546361 GeneID:10523
KEGG:hsa:10523 UCSC:uc002nei.1 CTD:10523 GeneCards:GC19M016629
HGNC:HGNC:16930 HPA:HPA050647 neXtProt:NX_Q8IWX8 PharmGKB:PA26459
eggNOG:NOG267701 HOGENOM:HOG000010294 HOVERGEN:HBG052716
InParanoid:Q8IWX8 KO:K12841 OrthoDB:EOG4BCDMG PhylomeDB:Q8IWX8
GenomeRNAi:10523 NextBio:39918 Bgee:Q8IWX8 CleanEx:HS_CHERP
Genevestigator:Q8IWX8 InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
Uniprot:Q8IWX8
Length = 916
Score = 131 (51.2 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 35/100 (35%), Positives = 55/100 (55%)
Query: 202 MVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 261
M +PP+D+ LR+VID LA +V G FE+ ME+ + NP F+FLF G + ++YY +L
Sbjct: 3 MPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKL 60
Query: 262 YSFAQGDTLQRWRT---EPFIMITGSGRWIPPALPTSKSP 298
+ Q + + +T EP + + PP P + P
Sbjct: 61 -ALEQQQLICKQQTPELEPAATMPPLPQ--PPLAPAAPIP 97
Score = 66 (28.3 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 37/179 (20%), Positives = 77/179 (43%)
Query: 302 KESGTTYAAGRSRRAEPERTLTDSQRD--EFEDMLRAL--TLERSQIKEAMGFALDNADA 357
++ T A + + ++ L ++Q D EF+++L+ + T + I + NA +
Sbjct: 127 RQEQVTAAVAHAVEQQMQKLLEETQLDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKS 186
Query: 358 AG--EIVEV-LTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDI 414
E++ L +T ++ + L++DVLH+ K A + A L +
Sbjct: 187 PPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQR--KQAR----ELLAALQKV 240
Query: 415 MESFNDLYRSITGRITAEALKE-RVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVT 472
+ +Y T + E K+ ++ ++LQ+W F D+ + L++ L G T
Sbjct: 241 VVP---IY--CTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQAT 294
Score = 39 (18.8 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 580 WKETN--MEAESMGLSGWNGYEE 600
W ++ M E G GWNG +
Sbjct: 455 WNNSHEGMWGEQRGDPGWNGQRD 477
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 137 (53.3 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 33/99 (33%), Positives = 54/99 (54%)
Query: 51 GKLP-GSF--DDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRR 107
G +P G+F +GD T ++VG L V + L + F FG I SVKI P
Sbjct: 289 GYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI--PVG------ 340
Query: 108 QRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 146
+ CGFV F+NR + + A +++ G V+ + +++ WG++
Sbjct: 341 -KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRN 378
>UNIPROTKB|F1NDZ9 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0044325 "ion channel binding"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0051209 "release of sequestered calcium ion into
cytosol" evidence=IEA] [GO:0051533 "positive regulation of NFAT
protein import into nucleus" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 GO:GO:0048471
GO:GO:0008285 GO:GO:0051209 GO:GO:0003723 GO:GO:0006396
GO:GO:0051533 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 GeneTree:ENSGT00600000084415
OMA:FEGPWNS EMBL:AADN02061998 IPI:IPI00585527
Ensembl:ENSGALT00000006060 ArrayExpress:F1NDZ9 Uniprot:F1NDZ9
Length = 905
Score = 128 (50.1 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 202 MVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 261
M +PP+D+ LR+VID LA +V G FE+ ME+ + NP F+FLF G + YY ++L
Sbjct: 3 MPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKENPKFSFLF--GGDFYGYYKYKL 60
Score = 63 (27.2 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 32/173 (18%), Positives = 76/173 (43%)
Query: 302 KESGTTYAAGRSRRAEPERTLTDSQRD--EFEDMLRAL--TLERSQIKEAMGFALDNADA 357
++ T A + + ++ L ++Q D EF+++L+ + T + I + NA +
Sbjct: 126 RQEQVTSAVALAIEQQMQKVLEETQLDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKS 185
Query: 358 AG--EIVEV-LTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDI 414
E++ L +T + ++ + L++DVLH+ K A R A +
Sbjct: 186 PAHCELMAGHLRNRITAEGAHFELRLHLIYLINDVLHHCQR--KQA---RDLLAALQKVV 240
Query: 415 MESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSG 467
+ + + ++ E ++++ ++LQ+W F ++ + L++ L G
Sbjct: 241 VPIYCTSFLAVE-----EDKQQKIARLLQLWEKNGYFDESIIQQLQSPALGLG 288
Score = 44 (20.5 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 294 TSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQ 326
+S+S +S +Y+ RSR R+ + SQ
Sbjct: 738 SSRSNSRSSKSSGSYSRSRSRSCSRSRSYSRSQ 770
>UNIPROTKB|A8E648 [details] [associations]
symbol:CHERP "CHERP protein" species:9913 "Bos taurus"
[GO:0051533 "positive regulation of NFAT protein import into
nucleus" evidence=IEA] [GO:0051209 "release of sequestered calcium
ion into cytosol" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0044325 "ion channel binding"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0048471 GO:GO:0008285 GO:GO:0051209 GO:GO:0003723
GO:GO:0006396 GO:GO:0051533 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 CTD:10523 eggNOG:NOG267701 HOGENOM:HOG000010294
HOVERGEN:HBG052716 KO:K12841 OrthoDB:EOG4BCDMG InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 GeneTree:ENSGT00600000084415 OMA:FEGPWNS
EMBL:DAAA02019093 EMBL:BC153841 IPI:IPI00871125
RefSeq:NP_001103268.1 UniGene:Bt.46185 Ensembl:ENSBTAT00000006959
GeneID:525110 KEGG:bta:525110 InParanoid:A8E648 NextBio:20874102
Uniprot:A8E648
Length = 916
Score = 130 (50.8 bits), Expect = 9.6e-06, Sum P(3) = 9.6e-06
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 202 MVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 261
M +PP+D+ LR+VID LA +V G FE+ ME+ + NP F+FLF G + ++YY +L
Sbjct: 3 MPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKL 60
Score = 66 (28.3 bits), Expect = 9.6e-06, Sum P(3) = 9.6e-06
Identities = 37/179 (20%), Positives = 76/179 (42%)
Query: 302 KESGTTYAAGRSRRAEPERTLTDSQRD--EFEDMLRAL--TLERSQIKEAMGFALDNADA 357
++ T A + + ++ L ++Q D EF+ +L+ + T + I + NA +
Sbjct: 127 RQEQVTAAVAHALEQQMQKLLEETQLDMNEFDSLLQPIIDTCTKDAISAGKNWMFSNAKS 186
Query: 358 AG--EIVEV-LTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDI 414
E++ L +T ++ + L++DVLH+ K A + A L +
Sbjct: 187 PPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQR--KQAR----ELLAALQKV 240
Query: 415 MESFNDLYRSITGRITAEALKE-RVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVT 472
+ +Y T + E K+ ++ ++LQ+W F D+ + L++ L G T
Sbjct: 241 VVP---IY--CTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQAT 294
Score = 39 (18.8 bits), Expect = 9.6e-06, Sum P(3) = 9.6e-06
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 580 WKETN--MEAESMGLSGWNGYEE 600
W ++ M E G GWNG +
Sbjct: 455 WNNSHEGMWGEQRGDPGWNGQRD 477
>UNIPROTKB|J9NZK1 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 GO:GO:0003723
GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
CTD:10523 KO:K12841 InterPro:IPR006903 InterPro:IPR006569
Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905 PROSITE:PS51391
GeneTree:ENSGT00600000084415 EMBL:AAEX03012307 RefSeq:XP_852773.2
ProteinModelPortal:J9NZK1 Ensembl:ENSCAFT00000050032 GeneID:610237
KEGG:cfa:610237 Uniprot:J9NZK1
Length = 916
Score = 130 (50.8 bits), Expect = 9.6e-06, Sum P(3) = 9.6e-06
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 202 MVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 261
M +PP+D+ LR+VID LA +V G FE+ ME+ + NP F+FLF G + ++YY +L
Sbjct: 3 MPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKL 60
Score = 66 (28.3 bits), Expect = 9.6e-06, Sum P(3) = 9.6e-06
Identities = 37/179 (20%), Positives = 77/179 (43%)
Query: 302 KESGTTYAAGRSRRAEPERTLTDSQRD--EFEDMLRAL--TLERSQIKEAMGFALDNADA 357
++ T A + + ++ L ++Q D EF+++L+ + T + I + NA +
Sbjct: 127 RQEQVTAAVAHAVEQQMQKLLEETQLDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKS 186
Query: 358 AG--EIVEV-LTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDI 414
E++ L +T ++ + L++DVLH+ K A + A L +
Sbjct: 187 PPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQR--KQAR----ELLAALQKV 240
Query: 415 MESFNDLYRSITGRITAEALKE-RVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVT 472
+ +Y T + E K+ ++ ++LQ+W F D+ + L++ L G T
Sbjct: 241 VVP---IY--CTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQAT 294
Score = 39 (18.8 bits), Expect = 9.6e-06, Sum P(3) = 9.6e-06
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 580 WKETN--MEAESMGLSGWNGYEE 600
W ++ M E G GWNG +
Sbjct: 455 WNNSHEGMWGEQRGDPGWNGQRD 477
>UNIPROTKB|E2RHU5 [details] [associations]
symbol:CHERP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 GO:GO:0003723
GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942 SUPFAM:SSF48464
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 GeneTree:ENSGT00600000084415
OMA:FEGPWNS EMBL:AAEX03012307 Ensembl:ENSCAFT00000024839
NextBio:20895802 Uniprot:E2RHU5
Length = 940
Score = 130 (50.8 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 202 MVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 261
M +PP+D+ LR+VID LA +V G FE+ ME+ + NP F+FLF G + ++YY +L
Sbjct: 3 MPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKL 60
Score = 66 (28.3 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 37/179 (20%), Positives = 77/179 (43%)
Query: 302 KESGTTYAAGRSRRAEPERTLTDSQRD--EFEDMLRAL--TLERSQIKEAMGFALDNADA 357
++ T A + + ++ L ++Q D EF+++L+ + T + I + NA +
Sbjct: 127 RQEQVTAAVAHAVEQQMQKLLEETQLDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKS 186
Query: 358 AG--EIVEV-LTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDI 414
E++ L +T ++ + L++DVLH+ K A + A L +
Sbjct: 187 PPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQR--KQAR----ELLAALQKV 240
Query: 415 MESFNDLYRSITGRITAEALKE-RVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVT 472
+ +Y T + E K+ ++ ++LQ+W F D+ + L++ L G T
Sbjct: 241 VVP---IY--CTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQAT 294
Score = 39 (18.8 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 580 WKETN--MEAESMGLSGWNGYEE 600
W ++ M E G GWNG +
Sbjct: 455 WNNSHEGMWGEQRGDPGWNGQRD 477
>SGD|S000000416 [details] [associations]
symbol:NGR1 "RNA binding protein that negatively regulates
growth rate" species:4932 "Saccharomyces cerevisiae" [GO:0005737
"cytoplasm" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] [GO:0007005 "mitochondrion organization"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0061158 "3'-UTR-mediated
mRNA destabilization" evidence=IMP;IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SGD:S000000416 GO:GO:0048471 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006936 GO:GO:0000932
GO:GO:0007005 GO:GO:0010494 eggNOG:COG0724 OrthoDB:EOG44BFB8
RefSeq:NP_009771.3 GeneID:852513 KEGG:sce:YBR212W
GeneTree:ENSGT00510000047100 EMBL:Z14097 EMBL:Z36081 PIR:S46086
RefSeq:NP_009775.3 ProteinModelPortal:P32831 SMR:P32831
DIP:DIP-5160N IntAct:P32831 MINT:MINT-513097 STRING:P32831
PaxDb:P32831 PeptideAtlas:P32831 EnsemblFungi:YBR212W GeneID:852517
KEGG:sce:YBR216C CYGD:YBR212w OMA:RFANETE NextBio:971535
Genevestigator:P32831 GermOnline:YBR212W GO:GO:0061158
Uniprot:P32831
Length = 672
Score = 139 (54.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 35/94 (37%), Positives = 52/94 (55%)
Query: 53 LPGSFDDGDPQTTNLYVGNLSPQVDENFLLRT-FGRFGPIASVKIMWPRTEEERRRQRNC 111
LP + + DP T ++VG L P+ E F LR+ F FGPI +V+I P +NC
Sbjct: 348 LPSNTYNTDPTNTTVFVGGLVPKTTE-FQLRSLFKPFGPILNVRI--PNG-------KNC 397
Query: 112 GFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGK 145
GFV F R D +A+ +QG +V +++ WG+
Sbjct: 398 GFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR 431
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 136 (52.9 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 66 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 125
N++VG+LSP+V + L ++F F + ++MW +++ R R GFV+F N+ D Q A
Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMW---DQKTGRSRGFGFVSFRNQQDAQTA 201
Query: 126 KDEMQGVVVYEYELKIGW 143
+EM G + +++ W
Sbjct: 202 INEMNGKWLSSRQIRCNW 219
>POMBASE|SPBC11C11.01 [details] [associations]
symbol:SPBC11C11.01 "U2-associated protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0005686 "U2
snRNP" evidence=ISS] [GO:0005829 "cytosol" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC11C11.01 GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686
GO:GO:0045292 InterPro:IPR006569 SMART:SM00582 PROSITE:PS51391
PIR:T39711 RefSeq:NP_596390.2 GeneID:2539748 eggNOG:KOG0151
OrthoDB:EOG4TQQKF NextBio:20800899 Uniprot:Q10200
Length = 466
Score = 136 (52.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 58/248 (23%), Positives = 106/248 (42%)
Query: 289 PPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAM 348
P LP + EH + S T ++ + LT R + E +++ L E+ I +
Sbjct: 184 PKRLPNA---EHLESSTKT-----KDESQDKDKLTKLDRAKLEWLIQGLNCEKGSIGNLL 235
Query: 349 GFALDNADAAGEIVEVLTESLTLKETPIPTKV--------------ARLMLVSDVLHNSS 394
FA+++ + EI + + + TKV + + L++D+L N
Sbjct: 236 CFAVEHVNNHVEITDAFLKEFFNDQPTDDTKVYDDDYINERGEKKLSLIYLMNDILFNGI 295
Query: 395 APVKNASAYRTKFEATLPDIMESFNDLY---RSITGRITAEALKERVLKVLQVWSDWFLF 451
+ YR FE P + +DLY + + GRI + ++V+KV++VW W F
Sbjct: 296 SGTSLVWRYRFSFE---PHVERLLDDLYLFSKRLGGRIKEDIFCKKVVKVIEVWKTWIAF 352
Query: 452 SDAYVNGLRATFLRSGNSGVTPFHSICGDAPEIDKKNNSEDTCDLSKTNQDTALAMGKGA 511
+ + F SGN+ +P I A +++ KN+ + ++ QD G
Sbjct: 353 QEETLERAWRNF--SGNTPQSP--QINSAALKVETKNSWTAISEETEGLQDDEEYNGIPV 408
Query: 512 AIKELMNL 519
+ EL+N+
Sbjct: 409 DVNELLNV 416
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 135 (52.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 32/98 (32%), Positives = 53/98 (54%)
Query: 49 PSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQ 108
P+G L + +GD T ++VG L V + L + F FG I SVKI P
Sbjct: 290 PNGTL--TRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI--PVG------- 338
Query: 109 RNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 146
+ CGFV F+NR + + A +++ G V+ + +++ WG++
Sbjct: 339 KGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRN 376
>UNIPROTKB|F5H5X1 [details] [associations]
symbol:SFSWAP "Splicing factor, suppressor of white-apricot
homolog" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000061 Pfam:PF01805 PROSITE:PS50128
SMART:SM00648 GO:GO:0003723 GO:GO:0006396 SUPFAM:SSF109905
EMBL:AC131009 EMBL:AC117500 HGNC:HGNC:10790 ChiTaRS:SFSWAP
IPI:IPI01012731 ProteinModelPortal:F5H5X1 SMR:F5H5X1
Ensembl:ENST00000535236 ArrayExpress:F5H5X1 Bgee:F5H5X1
Uniprot:F5H5X1
Length = 546
Score = 114 (45.2 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 46/176 (26%), Positives = 72/176 (40%)
Query: 162 MAIRSKEGATVILSGPSG----PPVTTVPSQNSELVLTPNV----PDIMVIPPEDRHLRH 213
+ + + G T P G PP TT + + T P +IPP ++
Sbjct: 193 VTVSNSPGVTTTAPPPPGTTPLPPPTTAETSSGATSTTTTTSALAPVAAIIPPPP-DVQP 251
Query: 214 VIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQ---GDTL 270
VID LA YV G FE ++ R + + F FL + + + YY ++ F Q GD++
Sbjct: 252 VIDKLAEYVARNGLKFETSV--RAKNDQRFEFL-QPWHQYNAYYEFKKQFFLQKEGGDSM 308
Query: 271 QRWRTEPFIMITGSGRWIPPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQ 326
Q + P T S P +PE E G +G + A +T+ D +
Sbjct: 309 QAV-SAPEEAPTDSAPEKPSDAGEDGAPEDAAEVGARAGSGGKKEASSSKTVPDGK 363
Score = 70 (29.7 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 39/159 (24%), Positives = 68/159 (42%)
Query: 586 EAESMGLSGWNGYEEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDPVLPASKWALE 645
+A +G +G +++ S+ +VP G ++ I K ++ND +LP K ++
Sbjct: 337 DAAEVGARAGSGGKKEASSSK---TVPDGKLVKASFAPISFAIKAKEND-LLPLEKNRVK 392
Query: 646 -DDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDASIPVQPDSGMNEEQ-R 703
DD+SDD+++ A P+ A ++ P + +Q +
Sbjct: 393 LDDDSDDDEESKEGQESSSSA------ANTNPAVAPPC-VVVEEKKPQLTQEELEAKQAK 445
Query: 704 QKLR-RLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKR 741
QKL RL + RE L + S E EK++ RKR
Sbjct: 446 QKLEDRLAAAA---REKLAQA---SKESKEKQLQAERKR 478
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 112 (44.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 64 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQ 123
++ L++G LS VDE L F FG +A V+I + ++ R R GFV F D
Sbjct: 40 SSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAY---DKGSGRSRGFGFVDFAEEGDAL 96
Query: 124 AAKDEMQGVVVYEYELKIGW 143
+AKD M G + L+I +
Sbjct: 97 SAKDAMDGKGLLGRPLRISF 116
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 128 (50.1 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 24 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 79
Query: 125 AKDEMQGVVVYEYELKIG 142
A DEM G + ++ +G
Sbjct: 80 AVDEMNGKELNGKQIYVG 97
>UNIPROTKB|G4MV79 [details] [associations]
symbol:MGG_15600 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000061 Pfam:PF01805 GO:GO:0003723
GO:GO:0006396 EMBL:CM001232 InterPro:IPR006569 SUPFAM:SSF109905
PROSITE:PS51391 RefSeq:XP_003713901.1 EnsemblFungi:MGG_15600T0
GeneID:12987307 KEGG:mgr:MGG_15600 Uniprot:G4MV79
Length = 826
Score = 95 (38.5 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 32/131 (24%), Positives = 56/131 (42%)
Query: 167 KEGATVILSGPSGPPVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGG 226
KE ++ G P T+ +Q V V + V PP+D H+ I + +L+ G
Sbjct: 298 KERSSYRGRGRGFAPPTSYDAQVGSPVNRSGVMHVPVRPPKDIHMLRTIHMVVESILEHG 357
Query: 227 CAFEQAIMERG--RGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGS 284
FE +M R + + ++++ S+ +Y +RL+ G QR + + + G
Sbjct: 358 PEFEALLMSRPDVQREEKWAWIWDARSEGGVWYRYRLWEVITGARTQRGKGKFVPLFEGG 417
Query: 285 GRWIPPALPTS 295
W P P S
Sbjct: 418 SAWKLPDQPLS 428
Score = 90 (36.7 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 378 TKVARLMLVSDVLHNSSAP-VKNASAYRTKFEATLPD--IMESFNDLYRSIT-GRITAEA 433
+K+ L ++SD+L +SS +++A YR FEA L + + E + + GR+ AE
Sbjct: 577 SKLIGLYVISDILSSSSTSGIRHAWRYRQHFEAALRNRKVCEGLGMVPEKMGWGRLRAEK 636
Query: 434 LKERVLKVLQVWSDWFLF 451
K V VL W W +F
Sbjct: 637 WKRSVGLVLGHWEGWCVF 654
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 131 (51.2 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 35/116 (30%), Positives = 57/116 (49%)
Query: 32 NLFQPSSRFDELPDDFDPSGKLP-GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGP 90
N Q SS+ L +G + GS DG+ ++VG + P V + L + F +FG
Sbjct: 287 NQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGE 346
Query: 91 IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 146
+ SVKI P + CGFV F +R + A + + G V+ + +++ WG+S
Sbjct: 347 VVSVKI--PVG-------KGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGRS 393
>UNIPROTKB|F1NAQ9 [details] [associations]
symbol:SUGP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0005634 GO:GO:0003723 GO:GO:0006396 SUPFAM:SSF109905
OMA:EKVAMEN GeneTree:ENSGT00410000025695 EMBL:AADN02071815
IPI:IPI00580066 Ensembl:ENSGALT00000004744 Uniprot:F1NAQ9
Length = 619
Score = 131 (51.2 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 200 DIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYY 257
+I V+PPED R V++ LA +V +GG E+ ME + NP F+FL + S+E YY
Sbjct: 167 EIKVLPPEDAETRQVVEKLARFVAEGGPELEKVAMEDYKDNPAFSFLHDKNSREFLYY 224
Score = 49 (22.3 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 15/79 (18%), Positives = 37/79 (46%)
Query: 532 GLSLVGGREMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSGRYSRGWKETNMEAESMG 591
GL G+ + + + L +A+K++ E +++ + ++ + +E M E
Sbjct: 394 GLGYEKGKPVGLVGVTELSEAQKKQLKE-QQEMQQMYDMIM--KHKQAMQEMQMMWEKAI 450
Query: 592 LSGWNGYEEDEKLSQAVGS 610
+GY+ DE++ +G+
Sbjct: 451 QQHQHGYDSDEEVDSELGT 469
>UNIPROTKB|Q12872 [details] [associations]
symbol:SFSWAP "Splicing factor, suppressor of white-apricot
homolog" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
InterPro:IPR000061 Pfam:PF01805 PROSITE:PS50128 SMART:SM00648
GO:GO:0005634 GO:GO:0006355 EMBL:CH471054 GO:GO:0006351
GO:GO:0003723 GO:GO:0048025 GO:GO:0006376 SUPFAM:SSF109905
InterPro:IPR019147 Pfam:PF09750 EMBL:AC131009 EMBL:U08377
EMBL:AC117500 EMBL:BC008707 EMBL:BC015953 EMBL:BC136678
EMBL:BC144364 IPI:IPI00290094 IPI:IPI00790550 PIR:A54037 PIR:B54037
PIR:C54037 RefSeq:NP_001248340.1 RefSeq:NP_004583.2
UniGene:Hs.308171 PDB:2E5Z PDB:2E60 PDBsum:2E5Z PDBsum:2E60
ProteinModelPortal:Q12872 SMR:Q12872 IntAct:Q12872 STRING:Q12872
PhosphoSite:Q12872 DMDM:292495067 PRIDE:Q12872
Ensembl:ENST00000261674 Ensembl:ENST00000541286 GeneID:6433
KEGG:hsa:6433 UCSC:uc001uja.1 CTD:6433 GeneCards:GC12P132196
H-InvDB:HIX0036782 HGNC:HGNC:10790 HPA:HPA039362 HPA:HPA040063
MIM:601945 neXtProt:NX_Q12872 PharmGKB:PA35706 eggNOG:NOG289028
HOVERGEN:HBG079184 InParanoid:Q12872 OMA:MYYSYYM OrthoDB:EOG4ZW59T
PhylomeDB:Q12872 ChiTaRS:SFSWAP EvolutionaryTrace:Q12872
GenomeRNAi:6433 NextBio:24987 ArrayExpress:Q12872 Bgee:Q12872
CleanEx:HS_SFRS8 Genevestigator:Q12872 GermOnline:ENSG00000061936
Uniprot:Q12872
Length = 951
Score = 114 (45.2 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 46/176 (26%), Positives = 72/176 (40%)
Query: 162 MAIRSKEGATVILSGPSG----PPVTTVPSQNSELVLTPNV----PDIMVIPPEDRHLRH 213
+ + + G T P G PP TT + + T P +IPP ++
Sbjct: 400 VTVSNSPGVTTTAPPPPGTTPLPPPTTAETSSGATSTTTTTSALAPVAAIIPPPP-DVQP 458
Query: 214 VIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQ---GDTL 270
VID LA YV G FE ++ R + + F FL + + + YY ++ F Q GD++
Sbjct: 459 VIDKLAEYVARNGLKFETSV--RAKNDQRFEFL-QPWHQYNAYYEFKKQFFLQKEGGDSM 515
Query: 271 QRWRTEPFIMITGSGRWIPPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQ 326
Q + P T S P +PE E G +G + A +T+ D +
Sbjct: 516 QAV-SAPEEAPTDSAPEKPSDAGEDGAPEDAAEVGARAGSGGKKEASSSKTVPDGK 570
Score = 70 (29.7 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 39/159 (24%), Positives = 68/159 (42%)
Query: 586 EAESMGLSGWNGYEEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDPVLPASKWALE 645
+A +G +G +++ S+ +VP G ++ I K ++ND +LP K ++
Sbjct: 544 DAAEVGARAGSGGKKEASSSK---TVPDGKLVKASFAPISFAIKAKEND-LLPLEKNRVK 599
Query: 646 -DDESDDEQKXXXXXXXXXXXXXXXENAGDGPSKADDVDFTIDASIPVQPDSGMNEEQ-R 703
DD+SDD+++ A P+ A ++ P + +Q +
Sbjct: 600 LDDDSDDDEESKEGQESSSSA------ANTNPAVAPPC-VVVEEKKPQLTQEELEAKQAK 652
Query: 704 QKLR-RLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKR 741
QKL RL + RE L + S E EK++ RKR
Sbjct: 653 QKLEDRLAAAA---REKLAQA---SKESKEKQLQAERKR 685
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 130 (50.8 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 23 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 78
Query: 125 AKDEMQGVVVYEYELKIG 142
A DEM G + ++ +G
Sbjct: 79 AVDEMNGKELNGKQIYVG 96
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 129 (50.5 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 66 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 125
N++VG+LSP+V + L F + + ++MW +++ R R GFV+F N+ D Q A
Sbjct: 140 NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMW---DQKTGRSRGFGFVSFRNQQDAQTA 196
Query: 126 KDEMQGVVVYEYELKIGW 143
DE+ G + +++ W
Sbjct: 197 IDEITGKWLGSRQIRCNW 214
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 130 (50.8 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 127 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 182
Query: 125 AKDEMQGVVVYEYELKIG 142
A DEM G + ++ +G
Sbjct: 183 AVDEMNGKELNGKQIYVG 200
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 128 (50.1 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 66 NLYVGNLSPQVDENFLLRTFGRFGPIAS----VKIMWPRTEEERRRQRNCGFVAFMNRAD 121
N++VG+LSP+V + L +F F +S ++MW +++ R R GFV+F N+ D
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMW---DQKTGRSRGFGFVSFRNQQD 205
Query: 122 GQAAKDEMQGVVVYEYELKIGW 143
Q A +EM G V +++ W
Sbjct: 206 AQTAINEMNGKWVSSRQIRCNW 227
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 127 (49.8 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 33/86 (38%), Positives = 43/86 (50%)
Query: 58 DDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFM 117
DDG P+T LYVGNLS V E +L+ F + GP S K++ T + C FV F
Sbjct: 4 DDGQPRT--LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPY----C-FVEFY 56
Query: 118 NRADGQAAKDEMQGVVVYEYELKIGW 143
D AA M G + E+K+ W
Sbjct: 57 EHRDAAAALAAMNGRKILGKEVKVNW 82
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 127 (49.8 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 33/86 (38%), Positives = 43/86 (50%)
Query: 58 DDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFM 117
DDG P+T LYVGNLS V E +L+ F + GP S K++ T + C FV F
Sbjct: 4 DDGQPRT--LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPY----C-FVEFY 56
Query: 118 NRADGQAAKDEMQGVVVYEYELKIGW 143
D AA M G + E+K+ W
Sbjct: 57 EHRDAAAALAAMNGRKILGKEVKVNW 82
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 130 (50.8 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 125 AKDEMQGVVVYEYELKIG 142
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 130 (50.8 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 125 AKDEMQGVVVYEYELKIG 142
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 128 (50.1 bits), Expect = 0.00014, P = 0.00014
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 146 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 201
Query: 125 AKDEMQGVVVYEYELKIG 142
A DEM G + ++ +G
Sbjct: 202 AVDEMNGKELNGKQIYVG 219
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 128 (50.1 bits), Expect = 0.00015, P = 0.00015
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 125 AKDEMQGVVVYEYELKIG 142
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 128 (50.1 bits), Expect = 0.00015, P = 0.00015
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 159 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 214
Query: 125 AKDEMQGVVVYEYELKIG 142
A DEM G + ++ +G
Sbjct: 215 AVDEMNGKELNGKQIYVG 232
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 128 (50.1 bits), Expect = 0.00016, P = 0.00016
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 125 AKDEMQGVVVYEYELKIG 142
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 128 (50.1 bits), Expect = 0.00016, P = 0.00016
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 125 AKDEMQGVVVYEYELKIG 142
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 128 (50.1 bits), Expect = 0.00016, P = 0.00016
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 125 AKDEMQGVVVYEYELKIG 142
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 128 (50.1 bits), Expect = 0.00016, P = 0.00016
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 125 AKDEMQGVVVYEYELKIG 142
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 128 (50.1 bits), Expect = 0.00016, P = 0.00016
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 125 AKDEMQGVVVYEYELKIG 142
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 128 (50.1 bits), Expect = 0.00016, P = 0.00016
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 125 AKDEMQGVVVYEYELKIG 142
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 121 (47.7 bits), Expect = 0.00017, P = 0.00017
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 66 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 125
N+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q A
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQKA 247
Query: 126 KDEMQG 131
DEM G
Sbjct: 248 VDEMNG 253
>UNIPROTKB|H0YFR9 [details] [associations]
symbol:SFSWAP "Splicing factor, suppressor of white-apricot
homolog" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000061 Pfam:PF01805 PROSITE:PS50128 SMART:SM00648
GO:GO:0003723 GO:GO:0006396 SUPFAM:SSF109905 EMBL:AC131009
EMBL:AC117500 HGNC:HGNC:10790 ChiTaRS:SFSWAP
Ensembl:ENST00000537164 Uniprot:H0YFR9
Length = 320
Score = 123 (48.4 bits), Expect = 0.00018, P = 0.00018
Identities = 51/195 (26%), Positives = 80/195 (41%)
Query: 162 MAIRSKEGATVILSGPSG----PPVTTVPSQNSELVLTPNV----PDIMVIPPEDRHLRH 213
+ + + G T P G PP TT + + T P +IPP ++
Sbjct: 40 VTVSNSPGVTTTAPPPPGTTPLPPPTTAETSSGATSTTTTTSALAPVAAIIPPPP-DVQP 98
Query: 214 VIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQ---GDTL 270
VID LA YV G FE ++ R + + F FL + + + YY ++ F Q GD++
Sbjct: 99 VIDKLAEYVARNGLKFETSV--RAKNDQRFEFL-QPWHQYNAYYEFKKQFFLQKEGGDSM 155
Query: 271 QRWRTEPFIMITGSGRWIPPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQ---- 326
Q + P T S P +PE E G +G + A +T+ D +
Sbjct: 156 QAV-SAPEEAPTDSAPEKPSDAGEDGAPEDAAEVGARAGSGGKKEASSSKTVPDGKLVKA 214
Query: 327 RDEFEDMLRALTLER 341
+ + ED L A E+
Sbjct: 215 KQKLEDRLAAAAREK 229
>ASPGD|ASPL0000075677 [details] [associations]
symbol:AN4943 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 Pfam:PF01805 GO:GO:0003723 GO:GO:0006396
EMBL:BN001303 EMBL:AACD01000084 InterPro:IPR006569 SMART:SM00582
SUPFAM:SSF109905 PROSITE:PS51391 eggNOG:NOG307351 KO:K12842
OrthoDB:EOG4TQQKF RefSeq:XP_662547.1 ProteinModelPortal:Q5B3D7
EnsemblFungi:CADANIAT00005454 GeneID:2872744 KEGG:ani:AN4943.2
HOGENOM:HOG000197003 OMA:HAWRYRQ Uniprot:Q5B3D7
Length = 807
Score = 101 (40.6 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 25/77 (32%), Positives = 42/77 (54%)
Query: 379 KVARLMLVSDVLHNSSAP-VKNASAYRTKFEATLPD--IMESFNDLYRSIT-GRITAEAL 434
K+ L L+SD+L +S+ V++A YR FE+ L + E L + ++ GR+ AE
Sbjct: 569 KLVGLYLISDILSSSATSGVRHAWRYRQLFESALKTHKVFEHLGRLEKDLSWGRLRAEKW 628
Query: 435 KERVLKVLQVWSDWFLF 451
K + +L +W W +F
Sbjct: 629 KRSIGSLLHLWEGWCVF 645
Score = 77 (32.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 32/120 (26%), Positives = 51/120 (42%)
Query: 176 GPSGPPVTTVPSQNSELVLTPNVPDIMVIPPED-RHLRHVIDTLALYVLDGGCAFEQAIM 234
G PP + PS + + + V P D + LR + TL +L+ G FE +M
Sbjct: 297 GGFAPPSSYGPSYGG----SSSTLQVEVKAPSDLKQLRLIHKTLE-NLLNYGPEFEALLM 351
Query: 235 ERG--RGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTL--QRWRTE-PFIMITGSGRWIP 289
R + + +L++ S YY W+L+ QR ++ PF + G WIP
Sbjct: 352 SRPEVQKEEKWAWLWDARSPGGVYYRWKLWDIITNSRSKDQRGHSQNPFPIFEGGAMWIP 411
>UNIPROTKB|F2Z2U1 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
Ensembl:ENST00000361046 Ensembl:ENST00000382639
Ensembl:ENST00000382653 Uniprot:F2Z2U1
Length = 81
Score = 102 (41.0 bits), Expect = 0.00021, P = 0.00021
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 67 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 126
L++G L+ + +E L FG+ GPI+ V ++ RT + R F+ F N AD + A
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFENPADAKNAA 65
Query: 127 DEMQGVVVYE 136
+M G ++ +
Sbjct: 66 KDMNGKMMVD 75
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 125 (49.1 bits), Expect = 0.00021, P = 0.00021
Identities = 37/97 (38%), Positives = 51/97 (52%)
Query: 49 PSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQ 108
P GK PG+ DP TNLYV NL D++ L R F G IASVKI+ +T + R
Sbjct: 372 PGGKNPGT----DP--TNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCR-- 423
Query: 109 RNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGK 145
GFV ++ AD +A + + GV V + + + K
Sbjct: 424 -GYGFVRMVSLADSYSAINSINGVQVGGKTISVSFKK 459
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 123 (48.4 bits), Expect = 0.00021, P = 0.00021
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 66 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 125
N+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q A
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQKA 247
Query: 126 KDEMQGVVVYEYELKIG 142
DEM G + ++ +G
Sbjct: 248 VDEMNGKELNGKQIYVG 264
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 124 (48.7 bits), Expect = 0.00022, P = 0.00022
Identities = 27/88 (30%), Positives = 42/88 (47%)
Query: 59 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN 118
+ DP T ++VG L P V E L + F +G + VKI+ + CGFV F
Sbjct: 276 ESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIV---------AGKRCGFVQFGT 326
Query: 119 RADGQAAKDEMQGVVVYEYELKIGWGKS 146
RA + A + G + +++ WG+S
Sbjct: 327 RASAEQALSSLNGTQLGGQSIRLSWGRS 354
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 124 (48.7 bits), Expect = 0.00023, P = 0.00023
Identities = 29/92 (31%), Positives = 46/92 (50%)
Query: 55 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 114
G+ + DP T ++VG + V E+ L FG+FG + VKI P + CGFV
Sbjct: 268 GNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI--PAG-------KRCGFV 318
Query: 115 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 146
+ NRA + A + G + +++ WG+S
Sbjct: 319 QYANRACAEQALSVLNGTQLGGQSIRLSWGRS 350
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 123 (48.4 bits), Expect = 0.00026, P = 0.00026
Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 59 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN 118
D DP T ++VG L V ++ L FG+FG + VKI P + CGFV + N
Sbjct: 254 DNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIP-PG--------KRCGFVQYAN 304
Query: 119 RADGQAAKDEMQGVVVYEYELKIGWGKS 146
+A + A + G + +++ WG+S
Sbjct: 305 KASAEHALSVLNGTQLGGQSIRLSWGRS 332
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 125 (49.1 bits), Expect = 0.00033, P = 0.00033
Identities = 27/67 (40%), Positives = 38/67 (56%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
TN+Y+ N ++D+ L FGRFG + SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVM----TDEGGKSKGFGFVSFERHEDAQK 246
Query: 125 AKDEMQG 131
A DEM G
Sbjct: 247 AVDEMNG 253
>UNIPROTKB|E5RH24 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00979703
ProteinModelPortal:E5RH24 SMR:E5RH24 Ensembl:ENST00000520142
ArrayExpress:E5RH24 Bgee:E5RH24 Uniprot:E5RH24
Length = 118
Score = 100 (40.3 bits), Expect = 0.00034, P = 0.00034
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 66 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 125
+LYVG+L P V E L F GPI S+++ + RR +V F AD + A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAERA 68
Query: 126 KDEMQGVVVYEYELKIGWGK 145
D M V+ ++I W +
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQ 88
>UNIPROTKB|E5RJB9 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
Length = 129
Score = 100 (40.3 bits), Expect = 0.00034, P = 0.00034
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 66 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 125
+LYVG+L P V E L F GPI S+++ + RR +V F AD + A
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAERA 68
Query: 126 KDEMQGVVVYEYELKIGWGK 145
D M V+ ++I W +
Sbjct: 69 LDTMNFDVIKGKPVRIMWSQ 88
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 100 (40.3 bits), Expect = 0.00034, P = 0.00034
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
T +YVGNLSP ++ L F +G + +M R + R R GFV + + ++ +A
Sbjct: 3 TRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTD---RSRGFGFVTYSSHSEAEA 59
Query: 125 AKDEMQG 131
A M G
Sbjct: 60 AVSGMDG 66
>UNIPROTKB|A4FV64 [details] [associations]
symbol:SF4 "SF4 protein" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0005634 GO:GO:0003723 GO:GO:0006396 SUPFAM:SSF109905
KO:K13096 eggNOG:NOG299701 CTD:57794 HOVERGEN:HBG079172 OMA:EKVAMEN
GeneTree:ENSGT00410000025695 EMBL:DAAA02019030 EMBL:BC123792
IPI:IPI00838095 RefSeq:NP_001096748.1 UniGene:Bt.61513 SMR:A4FV64
STRING:A4FV64 Ensembl:ENSBTAT00000049124 GeneID:533971
KEGG:bta:533971 HOGENOM:HOG000253953 NextBio:20876213
Uniprot:A4FV64
Length = 635
Score = 123 (48.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 178 SGPPVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERG 237
S P V P ++ E + +I V PPE R VI+ LA +V +GG E+ ME
Sbjct: 146 SRPSVFQSPDEDDEEDYEQWL-EIKVSPPEGAETRKVIEKLARFVAEGGPELEKVAMENY 204
Query: 238 RGNPLFNFLFELGSKEHTYY 257
+ NP F+FL + S+E YY
Sbjct: 205 KDNPAFSFLHDKNSREFLYY 224
Score = 121 (47.7 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 29/96 (30%), Positives = 45/96 (46%)
Query: 203 VIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLY 262
V PPED ++++ + LA ++ DGG E ++ R N F+FL+E S+ + YY +L
Sbjct: 245 VSPPEDEEVKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYEPNSQGYKYYRQKLE 304
Query: 263 SFAQGDTLQRWRTEPFIMITGSGRWIPPALPTSKSP 298
F + P G R PP P +P
Sbjct: 305 EFRKAKAGPTGT--PMAPDLGLKRRSPPETPLGSTP 338
Score = 49 (22.3 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 15/79 (18%), Positives = 37/79 (46%)
Query: 532 GLSLVGGREMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSGRYSRGWKETNMEAESMG 591
GL G+ + + + L DA+K++ E +++ + ++ R ++ + E
Sbjct: 410 GLGYEKGKPVGLVGVTELSDAQKKQLKE-QQEMQQMYDMIM--QHKRAMQDMQLLWEKAL 466
Query: 592 LSGWNGYEEDEKLSQAVGS 610
+GY+ DE++ +G+
Sbjct: 467 QQHQHGYDSDEEVDSELGT 485
>UNIPROTKB|E2RCV3 [details] [associations]
symbol:SUGP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585
Pfam:PF01805 PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443
SMART:SM00648 GO:GO:0005634 GO:GO:0003723 GO:GO:0006396
SUPFAM:SSF109905 KO:K13096 CTD:57794 GeneTree:ENSGT00410000025695
EMBL:AAEX03012271 RefSeq:XP_864993.2 Ensembl:ENSCAFT00000022747
GeneID:476661 KEGG:cfa:476661 Uniprot:E2RCV3
Length = 636
Score = 123 (48.4 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 178 SGPPVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERG 237
S P V P ++ E + +I V PPE R VI+ LA +V +GG E+ ME
Sbjct: 147 SRPSVFQSPDEDEEEDYEQWL-EIKVSPPEGAETRKVIEKLARFVAEGGPELEKVAMENY 205
Query: 238 RGNPLFNFLFELGSKEHTYY 257
+ NP F+FL + S+E YY
Sbjct: 206 KDNPAFSFLHDKNSREFLYY 225
Score = 49 (22.3 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 15/79 (18%), Positives = 37/79 (46%)
Query: 532 GLSLVGGREMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSGRYSRGWKETNMEAESMG 591
GL G+ + + + L DA+K++ E +++ + ++ R ++ + E
Sbjct: 411 GLGYEKGKPVGLVGVTELSDAQKKQLKE-QQEMQQMYDMIM--QHKRAMQDMQLLWEKAL 467
Query: 592 LSGWNGYEEDEKLSQAVGS 610
+GY+ DE++ +G+
Sbjct: 468 QQHQHGYDSDEEVDSELGT 486
>UNIPROTKB|J9P8U4 [details] [associations]
symbol:SUGP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 GO:GO:0003723
GO:GO:0006396 SUPFAM:SSF109905 OMA:EKVAMEN
GeneTree:ENSGT00410000025695 EMBL:AAEX03012271
Ensembl:ENSCAFT00000049900 Uniprot:J9P8U4
Length = 640
Score = 123 (48.4 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 178 SGPPVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERG 237
S P V P ++ E + +I V PPE R VI+ LA +V +GG E+ ME
Sbjct: 151 SRPSVFQSPDEDEEEDYEQWL-EIKVSPPEGAETRKVIEKLARFVAEGGPELEKVAMENY 209
Query: 238 RGNPLFNFLFELGSKEHTYY 257
+ NP F+FL + S+E YY
Sbjct: 210 KDNPAFSFLHDKNSREFLYY 229
Score = 49 (22.3 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 15/79 (18%), Positives = 37/79 (46%)
Query: 532 GLSLVGGREMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSGRYSRGWKETNMEAESMG 591
GL G+ + + + L DA+K++ E +++ + ++ R ++ + E
Sbjct: 415 GLGYEKGKPVGLVGVTELSDAQKKQLKE-QQEMQQMYDMIM--QHKRAMQDMQLLWEKAL 471
Query: 592 LSGWNGYEEDEKLSQAVGS 610
+GY+ DE++ +G+
Sbjct: 472 QQHQHGYDSDEEVDSELGT 490
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 131 (51.2 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 66 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 125
+++VG+LS +V++ LL+ F FG ++ ++MW + + R R GFVAF RAD + A
Sbjct: 183 HIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMW---DMKTGRSRGYGFVAFRERADAEKA 239
Query: 126 KDEMQGVVVYEYELKIGW 143
M G + ++ W
Sbjct: 240 LTSMDGEWLGSRAIRCNW 257
Score = 37 (18.1 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 571 SSSGRY--SRGWKETNMEAESMGLSGWNGYEEDEKLSQAVGSVPLGT 615
SS G Y G M + +G G+E+ + Q G VP T
Sbjct: 401 SSPGPYFPQYGGPGGPMTPQGPAQAG-RGWEQPQMAQQGFGQVPGNT 446
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 123 (48.4 bits), Expect = 0.00037, P = 0.00037
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 66 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 125
+++VG+LS +V++ L + F FG ++ ++MW + + R R GFVAF +R+D + A
Sbjct: 177 HIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMW---DMKTGRSRGYGFVAFRDRSDAEKA 233
Query: 126 KDEMQGVVVYEYELKIGW 143
M G + ++ W
Sbjct: 234 LSSMDGEWLGSRAIRCNW 251
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 99 (39.9 bits), Expect = 0.00043, P = 0.00043
Identities = 25/66 (37%), Positives = 35/66 (53%)
Query: 77 DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 136
DE L FG+FGP SVK+M +E + + GFV+F D Q A DEM G +
Sbjct: 2 DER-LKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNG 56
Query: 137 YELKIG 142
++ +G
Sbjct: 57 KQIYVG 62
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 124 (48.7 bits), Expect = 0.00044, P = 0.00044
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
TN+Y+ NL +D+ L F RFGP SVK+M +E + + GFV+F D +
Sbjct: 191 TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVM----TDESGKSKGFGFVSFERHEDARK 246
Query: 125 AKDEMQGVVVYEYELKIG 142
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKDLNGKQIYVG 264
>ZFIN|ZDB-GENE-040407-1 [details] [associations]
symbol:cherp "calcium homeostasis endoplasmic
reticulum protein" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805 PROSITE:PS50128
PROSITE:PS50174 SMART:SM00443 SMART:SM00648 ZFIN:ZDB-GENE-040407-1
GO:GO:0003723 GO:GO:0006396 Gene3D:1.25.40.90 InterPro:IPR008942
SUPFAM:SSF48464 HOGENOM:HOG000010294 HOVERGEN:HBG052716
InterPro:IPR006903 InterPro:IPR006569 Pfam:PF04818 SUPFAM:SSF109905
PROSITE:PS51391 EMBL:BC171627 IPI:IPI00490676 UniGene:Dr.75231
ArrayExpress:B7ZVL5 Bgee:B7ZVL5 Uniprot:B7ZVL5
Length = 910
Score = 118 (46.6 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 26/57 (45%), Positives = 36/57 (63%)
Query: 205 PPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 261
PPED+ LR+VID LA +V G FE+ ME+ + N F+FLF G + YY ++L
Sbjct: 6 PPEDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNAKFSFLF--GGEFFGYYKYKL 60
Score = 61 (26.5 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 35/174 (20%), Positives = 72/174 (41%)
Query: 302 KESGTTYAAGRSRRAEPERTLTDSQRD--EFEDMLRAL--TLERSQIKEAMGFALDNADA 357
++ T A + + ++ L ++Q D E +++L+ + T + I + NA
Sbjct: 132 RQEQITAAISLAMEQQMQKLLVETQLDMNELDNLLQPIIDTCTKDAISAGKNWMFGNAKT 191
Query: 358 AGE---IVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDI 414
+ L +T E ++ + L +DVLH+ KN + A L +
Sbjct: 192 PQHCELMASHLRNRITADEAHFELRLHLIYLTNDVLHHCQR--KN----QKDLLAALQKV 245
Query: 415 MESFNDLYRSITGRITAEALKE-RVLKVLQVWSDWFLFSDAYVNGLRATFLRSG 467
+ +Y T ++ E K+ ++ ++LQ+W F D + L++ L G
Sbjct: 246 VVP---IY--CTSFLSVEEDKQQKITRLLQLWEKNGYFDDVTIQQLQSPALGLG 294
Score = 39 (18.8 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 22/100 (22%), Positives = 33/100 (33%)
Query: 511 AAIKELMNLPLSELERRCR---HNGLSLVGGREMMVARLLSLEDAEKQRGYELDDDLKSA 567
AA++ + P + R NGL +M R + RG +
Sbjct: 671 AAVEAFYSPPSHDRPRNSEGWEQNGLYEFFRAKMRARRKKEQDKRSSARGSR-SRSRSHS 729
Query: 568 HSQSSSGRYSRGWKETNMEAESMGLSGWNGYEEDEKLSQA 607
+SSS SR K + + S S Y SQ+
Sbjct: 730 RGRSSSHSSSRSSKSSRSRSRSRSRSRSRSYSRSRSRSQS 769
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 123 (48.4 bits), Expect = 0.00055, P = 0.00055
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 66 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 125
N+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q A
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQKA 247
Query: 126 KDEMQGVVVYEYELKIG 142
DEM G + ++ +G
Sbjct: 248 VDEMNGKELNGKQIYVG 264
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 113 (44.8 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 55 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 114
G D DP T ++VG L V ++ L F ++G I VKI P + CGFV
Sbjct: 251 GVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKI--PAG-------KRCGFV 301
Query: 115 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 146
F ++ + A + GV + +++ WG+S
Sbjct: 302 QFSEKSCAEEALRMLNGVQLGGTTVRLSWGRS 333
Score = 52 (23.4 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 553 EKQRGYELDDDLKSAHSQSSSGRYSRGWKET 583
++Q GY + D + + S G YS G+++T
Sbjct: 354 QEQYGYTMPQDPNAYYGGYSGGGYSGGYQQT 384
>ASPGD|ASPL0000005578 [details] [associations]
symbol:AN6676 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001301 GO:GO:0030529 EMBL:AACD01000111 eggNOG:NOG297815
OMA:GIHPRLT OrthoDB:EOG4KPXM5 RefSeq:XP_664280.1
ProteinModelPortal:Q5AYF4 STRING:Q5AYF4
EnsemblFungi:CADANIAT00007461 GeneID:2870465 KEGG:ani:AN6676.2
HOGENOM:HOG000180680 Uniprot:Q5AYF4
Length = 307
Score = 118 (46.6 bits), Expect = 0.00059, P = 0.00059
Identities = 36/108 (33%), Positives = 54/108 (50%)
Query: 36 PSSRFDELPDDFDPSGKLPGSFDDGDPQT-TNLYVGNLSPQVDENFLLRTFGRFGPIASV 94
P+ R DE DP +L D+G T +NL+V + P++ E+ + R F ++G + S
Sbjct: 40 PNGRLDER-GPIDPRKQLDD--DEGAVNTGSNLFVTGIHPRLTESDISRLFEKYGDVESC 96
Query: 95 KIMW-PRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141
IM P T+E R GFV + AAK+ +QG V+ L I
Sbjct: 97 SIMVDPHTKESR----GFGFVNMVTAEQADAAKEGLQGEVIEGRTLSI 140
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 120 (47.3 bits), Expect = 0.00062, P = 0.00062
Identities = 31/86 (36%), Positives = 45/86 (52%)
Query: 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRA 120
DP T ++VG LS V E+ L F FG I VKI P + CGFV F++R
Sbjct: 280 DPNNTTVFVGGLSGYVTEDELRSFFQGFGDITYVKIP-PG--------KGCGFVQFVHRH 330
Query: 121 DGQAAKDEMQGVVVYEYELKIGWGKS 146
+ A ++MQG + +++ WG+S
Sbjct: 331 AAEMAINQMQGYPIGNSRVRLSWGRS 356
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 119 (46.9 bits), Expect = 0.00073, P = 0.00073
Identities = 31/86 (36%), Positives = 44/86 (51%)
Query: 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRA 120
DP T ++VG LS V E+ L F FG I VKI P + CGFV F+ R
Sbjct: 282 DPNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIP-PG--------KGCGFVQFVQRH 332
Query: 121 DGQAAKDEMQGVVVYEYELKIGWGKS 146
+ A ++MQG + +++ WG+S
Sbjct: 333 AAEMAINQMQGYPIGNSRVRLSWGRS 358
>UNIPROTKB|Q8IWZ8 [details] [associations]
symbol:SUGP1 "SURP and G-patch domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0005681 GO:GO:0003723
GO:GO:0000398 SUPFAM:SSF109905 KO:K13096 eggNOG:NOG299701
EMBL:AF521128 EMBL:AY072916 EMBL:AY072917 EMBL:AC004475
EMBL:BC063784 EMBL:AL137286 EMBL:AL713757 IPI:IPI00103419
IPI:IPI00337787 PIR:T02299 RefSeq:NP_757386.2 UniGene:Hs.515274
ProteinModelPortal:Q8IWZ8 SMR:Q8IWZ8 IntAct:Q8IWZ8
MINT:MINT-3047702 STRING:Q8IWZ8 PhosphoSite:Q8IWZ8 DMDM:61216666
PaxDb:Q8IWZ8 PRIDE:Q8IWZ8 Ensembl:ENST00000247001
Ensembl:ENST00000334782 GeneID:57794 KEGG:hsa:57794 UCSC:uc002nmh.3
CTD:57794 GeneCards:GC19M019389 HGNC:HGNC:18643 HPA:HPA004890
MIM:607992 neXtProt:NX_Q8IWZ8 PharmGKB:PA165394338
HOVERGEN:HBG079172 InParanoid:Q8IWZ8 OMA:EKVAMEN OrthoDB:EOG4VX24Z
PhylomeDB:Q8IWZ8 ChiTaRS:SUGP1 GenomeRNAi:57794 NextBio:64730
ArrayExpress:Q8IWZ8 Bgee:Q8IWZ8 CleanEx:HS_SF4
Genevestigator:Q8IWZ8 GermOnline:ENSG00000105705 Uniprot:Q8IWZ8
Length = 645
Score = 117 (46.2 bits), Expect = 0.00076, Sum P(3) = 0.00075
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 200 DIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYY 257
+I V PPE R VI+ LA +V +GG E+ ME + NP F FL + S+E YY
Sbjct: 177 EIKVSPPEGAETRKVIEKLARFVAEGGPELEKVAMEDYKDNPAFAFLHDKNSREFLYY 234
Score = 50 (22.7 bits), Expect = 0.00076, Sum P(3) = 0.00075
Identities = 15/79 (18%), Positives = 37/79 (46%)
Query: 532 GLSLVGGREMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSGRYSRGWKETNMEAESMG 591
GL G+ + + + L DA+K++ E +++ + ++ R ++ + E
Sbjct: 420 GLGYEKGKPVGLVGVTELSDAQKKQLKE-QQEMQQMYDMIM--QHKRAMQDMQLLWEKAV 476
Query: 592 LSGWNGYEEDEKLSQAVGS 610
+GY+ DE++ +G+
Sbjct: 477 QQHQHGYDSDEEVDSELGT 495
Score = 44 (20.5 bits), Expect = 0.00076, Sum P(3) = 0.00075
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 175 SGPSGPPVTTVPSQNSELVL 194
S PS PP T PS +L
Sbjct: 108 SAPSAPPSTPTPSAGKRSLL 127
>RGD|1310496 [details] [associations]
symbol:Sugp1 "SURP and G patch domain containing 1"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000061 InterPro:IPR000467 Pfam:PF01585 Pfam:PF01805
PROSITE:PS50128 PROSITE:PS50174 SMART:SM00443 SMART:SM00648
RGD:1310496 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
SUPFAM:SSF109905 KO:K13096 eggNOG:NOG299701 CTD:57794
HOVERGEN:HBG079172 OrthoDB:EOG4VX24Z GeneTree:ENSGT00410000025695
EMBL:BC079341 IPI:IPI00206072 RefSeq:NP_001011920.1
RefSeq:XP_003751619.1 UniGene:Rn.67035 ProteinModelPortal:Q68FU8
SMR:Q68FU8 STRING:Q68FU8 PhosphoSite:Q68FU8 PRIDE:Q68FU8
Ensembl:ENSRNOT00000027826 GeneID:290666 KEGG:rno:290666
UCSC:RGD:1310496 InParanoid:Q68FU8 NextBio:631453
ArrayExpress:Q68FU8 Genevestigator:Q68FU8
GermOnline:ENSRNOG00000020510 Uniprot:Q68FU8
Length = 644
Score = 120 (47.3 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 200 DIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYY 257
+I V PPE R VI+ LA +V +GG E+ ME + NP F FL + S+E YY
Sbjct: 174 EIKVSPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYY 231
Score = 49 (22.3 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 15/79 (18%), Positives = 37/79 (46%)
Query: 532 GLSLVGGREMMVARLLSLEDAEKQRGYELDDDLKSAHSQSSSGRYSRGWKETNMEAESMG 591
GL G+ + + + L DA+K++ E +++ + ++ R ++ + E
Sbjct: 419 GLGYEKGKPVGLVGVTELSDAQKKQLKE-QQEMQQMYDMIM--QHKRAMQDMQLLWEKAL 475
Query: 592 LSGWNGYEEDEKLSQAVGS 610
+GY+ DE++ +G+
Sbjct: 476 QQHQHGYDSDEEVDSELGT 494
>SGD|S000001128 [details] [associations]
symbol:NAM8 "RNA binding protein, component of the U1 snRNP
protein" species:4932 "Saccharomyces cerevisiae" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IPI] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IPI] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001128 GO:GO:0005739 GO:GO:0000166 EMBL:BK006934
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0048026 GO:GO:0006376 GO:GO:0071004 OrthoDB:EOG44BFB8
EMBL:U00060 GO:GO:0005685 EMBL:X64763 EMBL:D11461 PIR:S46720
RefSeq:NP_011954.1 ProteinModelPortal:Q00539 SMR:Q00539
DIP:DIP-2749N IntAct:Q00539 MINT:MINT-612683 STRING:Q00539
PaxDb:Q00539 PeptideAtlas:Q00539 EnsemblFungi:YHR086W GeneID:856486
KEGG:sce:YHR086W CYGD:YHR086w GeneTree:ENSGT00510000047100
HOGENOM:HOG000066109 OMA:MNTGMNT NextBio:982182
Genevestigator:Q00539 GermOnline:YHR086W Uniprot:Q00539
Length = 523
Score = 120 (47.3 bits), Expect = 0.00089, P = 0.00089
Identities = 38/145 (26%), Positives = 60/145 (41%)
Query: 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRA 120
DP T +++G LS V E+ L F FG I VKI + CGFV +++R
Sbjct: 309 DPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKC---------CGFVQYVDRL 359
Query: 121 DGQAAKDEMQGVVVYEYELKIGWGKSVXXXXXXXXXXXXGQMAIRSKEGATVILSGPSGP 180
+AA MQG + +++ WG+S + ++ ++ G P
Sbjct: 360 SAEAAIAGMQGFPIANSRVRLSWGRSAKQTALLQQAMLSNSLQVQQQQ------PGLQQP 413
Query: 181 PVTTVPSQNSELVLTP--NVPDIMV 203
+PS E + P NV M+
Sbjct: 414 NYGYIPSSTCEAPVLPDNNVSSTML 438
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 96 (38.9 bits), Expect = 0.00091, P = 0.00091
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 67 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 126
L+VG LS +E L + F ++G I+ V ++ R E +R R GFV F N D + A
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR---ETQRSRGFGFVTFENIDDAKDAM 64
Query: 127 DEMQGVVVYEYELKIGW-GKS 146
M G V ++++ GKS
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKS 85
>UNIPROTKB|G4NLD4 [details] [associations]
symbol:MGG_02946 "Pre-mRNA-splicing factor sap114"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000061 Pfam:PF01805
PROSITE:PS50128 SMART:SM00648 GO:GO:0003723 GO:GO:0006396
EMBL:CM001237 SUPFAM:SSF109905 InterPro:IPR022030 Pfam:PF12230
KO:K12825 RefSeq:XP_003720761.1 ProteinModelPortal:G4NLD4
EnsemblFungi:MGG_02946T0 GeneID:2682499 KEGG:mgr:MGG_02946
Uniprot:G4NLD4
Length = 536
Score = 120 (47.3 bits), Expect = 0.00092, P = 0.00092
Identities = 32/105 (30%), Positives = 46/105 (43%)
Query: 175 SGPSGPPVTTVPSQNSELVLTP-NVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAI 233
+ P P T + + L P+ ++IPP +R VI+ A YV GG EQ +
Sbjct: 7 AAPPAPAAETAAATAAAAQLDGLRPPEGVIIPPPGE-IREVIEKTAGYVARGGLGIEQRL 65
Query: 234 MERGRGNPLFNFLFELGSKEHTYYVWRL--YSFAQGDTLQRWRTE 276
E GNP F+F+ + YY WR Y +G L R +
Sbjct: 66 RENHSGNPKFSFVTSQSDAYNPYYEWRKAEYKAGRGTALAAGRAD 110
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.133 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 852 743 0.00088 121 3 11 23 0.45 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 94
No. of states in DFA: 624 (66 KB)
Total size of DFA: 378 KB (2186 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 75.21u 0.09s 75.30t Elapsed: 00:00:10
Total cpu time: 75.23u 0.09s 75.32t Elapsed: 00:00:10
Start: Fri May 10 14:28:28 2013 End: Fri May 10 14:28:38 2013