BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003053
(852 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NV83|SR140_MOUSE U2 snRNP-associated SURP motif-containing protein OS=Mus musculus
GN=U2surp PE=1 SV=3
Length = 1029
Score = 348 bits (893), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 177/422 (41%), Positives = 250/422 (59%), Gaps = 19/422 (4%)
Query: 54 PGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGF 113
PGS D GDP TTNLY+GN++PQ++E L + FGRFGP+ASVKIMWPRT+EER R+RNCGF
Sbjct: 263 PGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGF 322
Query: 114 VAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSV-----------ALPSQALPAPPPGQM 162
VAFMNR D + A + G ++ +E+K+GWGK+V ++ LP PPP +
Sbjct: 323 VAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPPSMMEHTLP-PPPSGL 381
Query: 163 AIRSKEGATVILSGPSGPPVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYV 222
++ L P+ P+ P + T + + V+ P +R+L +I + +V
Sbjct: 382 PFNAQPRER--LKNPNA-PMLPPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFV 438
Query: 223 LDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMIT 282
+ G FE IM R NP+F FLFE + H YY W+LYS QGD+ +WRTE F M
Sbjct: 439 VREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRMFK 498
Query: 283 GSGRWIPPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERS 342
W PP L E++ + S++ L + QRD+ E++LR LT ++
Sbjct: 499 NGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKG----ALKEEQRDKLEEILRGLTPRKN 554
Query: 343 QIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASA 402
I +AM F L+NA+AA EIV+ +TESL++ +TP+P K+ARL LVSDVL+NSSA V NAS
Sbjct: 555 DIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASY 614
Query: 403 YRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRAT 462
YR FE L I N YR+I G + +E K+RV+ + W DW ++ + ++ L+
Sbjct: 615 YRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNI 674
Query: 463 FL 464
FL
Sbjct: 675 FL 676
>sp|O15042|SR140_HUMAN U2 snRNP-associated SURP motif-containing protein OS=Homo sapiens
GN=U2SURP PE=1 SV=2
Length = 1029
Score = 348 bits (892), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 177/422 (41%), Positives = 250/422 (59%), Gaps = 19/422 (4%)
Query: 54 PGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGF 113
PGS D GDP TTNLY+GN++PQ++E L + FGRFGP+ASVKIMWPRT+EER R+RNCGF
Sbjct: 263 PGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGF 322
Query: 114 VAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSV-----------ALPSQALPAPPPGQM 162
VAFMNR D + A + G ++ +E+K+GWGK+V ++ LP PPP +
Sbjct: 323 VAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPPSMMEHTLP-PPPSGL 381
Query: 163 AIRSKEGATVILSGPSGPPVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYV 222
++ L P+ P+ P + T + + V+ P +R+L +I + +V
Sbjct: 382 PFNAQPRER--LKNPNA-PMLPPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFV 438
Query: 223 LDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMIT 282
+ G FE IM R NP+F FLFE + H YY W+LYS QGD+ +WRTE F M
Sbjct: 439 VREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRMFK 498
Query: 283 GSGRWIPPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERS 342
W PP L E++ + S++ L + QRD+ E++LR LT ++
Sbjct: 499 NGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKG----ALKEEQRDKLEEILRGLTPRKN 554
Query: 343 QIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASA 402
I +AM F L+NA+AA EIV+ +TESL++ +TP+P K+ARL LVSDVL+NSSA V NAS
Sbjct: 555 DIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASY 614
Query: 403 YRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRAT 462
YR FE L I N YR+I G + +E K+RV+ + W DW ++ + ++ L+
Sbjct: 615 YRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNI 674
Query: 463 FL 464
FL
Sbjct: 675 FL 676
>sp|Q5R7X2|SR140_PONAB U2 snRNP-associated SURP motif-containing protein OS=Pongo abelii
GN=U2SURP PE=2 SV=1
Length = 1028
Score = 348 bits (892), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 177/422 (41%), Positives = 250/422 (59%), Gaps = 19/422 (4%)
Query: 54 PGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGF 113
PGS D GDP TTNLY+GN++PQ++E L + FGRFGP+ASVKIMWPRT+EER R+RNCGF
Sbjct: 262 PGSHDVGDPSTTNLYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGF 321
Query: 114 VAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSV-----------ALPSQALPAPPPGQM 162
VAFMNR D + A + G ++ +E+K+GWGK+V ++ LP PPP +
Sbjct: 322 VAFMNRRDAERALKNLNGKMIMSFEMKLGWGKAVPIPPHPIYIPPSMMEHTLP-PPPSGL 380
Query: 163 AIRSKEGATVILSGPSGPPVTTVPSQNSELVLTPNVPDIMVIPPEDRHLRHVIDTLALYV 222
++ L P+ P+ P + T + + V+ P +R+L +I + +V
Sbjct: 381 PFNAQPRER--LKNPNA-PMLPPPKNKEDFEKTLSQAIVKVVIPTERNLLALIHRMIEFV 437
Query: 223 LDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMIT 282
+ G FE IM R NP+F FLFE + H YY W+LYS QGD+ +WRTE F M
Sbjct: 438 VREGPMFEAMIMNREINNPMFRFLFENQTPAHVYYRWKLYSILQGDSPTKWRTEDFRMFK 497
Query: 283 GSGRWIPPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERS 342
W PP L E++ + S++ L + QRD+ E++LR LT ++
Sbjct: 498 NGSFWRPPPLNPYLHGMSEEQETEAFVEEPSKKG----ALKEEQRDKLEEILRGLTPRKN 553
Query: 343 QIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASA 402
I +AM F L+NA+AA EIV+ +TESL++ +TP+P K+ARL LVSDVL+NSSA V NAS
Sbjct: 554 DIGDAMVFCLNNAEAAEEIVDCITESLSILKTPLPKKIARLYLVSDVLYNSSAKVANASY 613
Query: 403 YRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRAT 462
YR FE L I N YR+I G + +E K+RV+ + W DW ++ + ++ L+
Sbjct: 614 YRKFFETKLCQIFSDLNATYRTIQGHLQSENFKQRVMTCFRAWEDWAIYPEPFLIKLQNI 673
Query: 463 FL 464
FL
Sbjct: 674 FL 675
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2
Length = 672
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 53 LPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCG 112
LP + + DP T ++VG L P+ E L F FGPI +V+I +NCG
Sbjct: 348 LPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRI---------PNGKNCG 398
Query: 113 FVAFMNRADGQAAKDEMQGVVVYEYELKIGWGK 145
FV F R D +A+ +QG +V +++ WG+
Sbjct: 399 FVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR 431
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 10/115 (8%)
Query: 35 QPSSRFDELPDDFDPSGKLP-GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIAS 93
Q SS+ L + +G GS DGD T ++VG L +V + L ++F +FG + S
Sbjct: 264 QYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVS 323
Query: 94 VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 148
VKI P + CGFV F +R+ Q A ++ G ++ + +++ WG+S A
Sbjct: 324 VKI--PAG-------KGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPA 369
Score = 33.5 bits (75), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 67 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 126
+++G+L +DE++L F + G + SVKI+ R ++ + +R GFV F A +
Sbjct: 86 IWIGDLQQWMDESYLHSCFSQAGEVISVKII--RNKQTGQSER-YGFVEFNTHAAAEKVL 142
Query: 127 DEMQGVVV 134
G ++
Sbjct: 143 QSYNGTMM 150
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 55 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 114
GS DG+ + ++VG L V E L++ F FG + SVKI + CGFV
Sbjct: 317 GSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKI---------PVGKGCGFV 367
Query: 115 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 146
F NR + A + G V+ + +++ WG+S
Sbjct: 368 QFANRQSAEEAIGNLNGTVIGKNTVRLSWGRS 399
Score = 40.4 bits (93), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 67 LYVGNLSPQVDENFLLRTF-GRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 125
++VG+L+P V + LL TF GR+ + K++ + R + GFV F + + A
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVV---IDSNTGRSKGYGFVRFGDENERSRA 271
Query: 126 KDEMQGVVVYEYELKIGWGKSVALPSQA 153
EM G ++++G +A P +A
Sbjct: 272 MTEMNGAFCSSRQMRVG----IATPKRA 295
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 15/84 (17%)
Query: 67 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNC-----GFVAFMNRAD 121
L+VG+L +DE +L F ++SVK++ R ++ C GFV F++R+
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVI--------RNKQTCQSEGYGFVEFLSRSA 172
Query: 122 GQAAKDEMQGVVV--YEYELKIGW 143
+ A GV + E ++ W
Sbjct: 173 AEEALQSFSGVTMPNAEQPFRLNW 196
>sp|Q10200|YBY1_SCHPO Uncharacterized protein C11C11.01 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC11C11.01 PE=1 SV=2
Length = 466
Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 24/217 (11%)
Query: 322 LTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKV- 380
LT R + E +++ L E+ I + FA+++ + EI + + + TKV
Sbjct: 209 LTKLDRAKLEWLIQGLNCEKGSIGNLLCFAVEHVNNHVEITDAFLKEFFNDQPTDDTKVY 268
Query: 381 -------------ARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLY---RS 424
+ + L++D+L N + YR FE P + +DLY +
Sbjct: 269 DDDYINERGEKKLSLIYLMNDILFNGISGTSLVWRYRFSFE---PHVERLLDDLYLFSKR 325
Query: 425 ITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVTPFHSICGDAPEI 484
+ GRI + ++V+KV++VW W F + + F SGN+ +P I A ++
Sbjct: 326 LGGRIKEDIFCKKVVKVIEVWKTWIAFQEETLERAWRNF--SGNTPQSP--QINSAALKV 381
Query: 485 DKKNNSEDTCDLSKTNQDTALAMGKGAAIKELMNLPL 521
+ KN+ + ++ QD G + EL+N+
Sbjct: 382 ETKNSWTAISEETEGLQDDEEYNGIPVDVNELLNVEF 418
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 47 FDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERR 106
+ PSG S +GD T ++VG L V + L + F FG I SVKI
Sbjct: 290 YMPSGAFTRS--EGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI---------P 338
Query: 107 RQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 148
+ CGFV F+NR + + A +++ G V+ + +++ WG++ A
Sbjct: 339 VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPA 380
Score = 34.7 bits (78), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 67 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 126
++VG+L+P V + L TF P SVK + R + GFV F + + A
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYP--SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 258
Query: 127 DEMQGVVVYEYELKIG 142
EM GV ++IG
Sbjct: 259 TEMNGVKCSSRAMRIG 274
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 11/102 (10%)
Query: 47 FDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERR 106
+ P+G L + +GD T ++VG L V + L + F FG I SVKI
Sbjct: 288 YMPNGTL--TRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI---------P 336
Query: 107 RQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 148
+ CGFV F+NR + + A +++ G V+ + +++ WG++ A
Sbjct: 337 VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPA 378
Score = 38.5 bits (88), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 67 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 126
++VG+LSP V +N L TF P SVK + R + GFV F + + A
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYP--SVKAAKVVLDANTGRSKGYGFVRFGDENERTKAM 256
Query: 127 DEMQGVVVYEYELKIG 142
EM GV ++IG
Sbjct: 257 TEMNGVKCSSRAMRIG 272
>sp|Q15415|RBY1F_HUMAN RNA-binding motif protein, Y chromosome, family 1 member F/J
OS=Homo sapiens GN=RBMY1F PE=2 SV=2
Length = 496
Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 5/137 (3%)
Query: 67 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 126
L++G L+ + +E L FG+ GPI+ V ++ RT + R F+ F N AD + A
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFENPADAKNAA 65
Query: 127 DEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVP 186
+M G ++ +K+ K + S PP RS G+ G SG +P
Sbjct: 66 KDMNGTSLHGKAIKVEQAKKPSFQSGGR-RRPPASSRNRSPSGSLRSARGSSGGTRGWLP 124
Query: 187 SQNSELVLTPNVPDIMV 203
S L PD+ +
Sbjct: 125 SHEGHLDDGGYTPDLKM 141
>sp|Q8CGZ0|CHERP_MOUSE Calcium homeostasis endoplasmic reticulum protein OS=Mus musculus
GN=Cherp PE=1 SV=1
Length = 936
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 202 MVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 261
M +PP+D+ LR+VID LA +V G FE+ ME+ + NP F+FLF G + ++YY +L
Sbjct: 3 MPMPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKL 60
>sp|Q8IWX8|CHERP_HUMAN Calcium homeostasis endoplasmic reticulum protein OS=Homo sapiens
GN=CHERP PE=1 SV=3
Length = 916
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 202 MVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRL 261
M +PP+D+ LR+VID LA +V G FE+ ME+ + NP F+FLF G + ++YY +L
Sbjct: 3 MPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLF--GGEFYSYYKCKL 60
>sp|P0C7P1|RBY1D_HUMAN RNA-binding motif protein, Y chromosome, family 1 member D OS=Homo
sapiens GN=RBMY1D PE=2 SV=1
Length = 496
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 5/137 (3%)
Query: 67 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 126
L++G L+ + +E L FG+ GPI+ V ++ RT + R F+ F N AD + A
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFENPADAKNAA 65
Query: 127 DEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVP 186
+M G ++ +K+ K + S PP RS G+ G G +P
Sbjct: 66 KDMNGKSLHGKAIKVEQAKKPSFQSGGR-RRPPASSRNRSPSGSLRSARGSRGGTRGWLP 124
Query: 187 SQNSELVLTPNVPDIMV 203
SQ L PD+ +
Sbjct: 125 SQEGHLDDGGYTPDLKM 141
>sp|A6NDE4|RBY1B_HUMAN RNA-binding motif protein, Y chromosome, family 1 member B OS=Homo
sapiens GN=RBMY1B PE=2 SV=2
Length = 496
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 5/137 (3%)
Query: 67 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 126
L++G L+ + +E L FG+ GPI+ V ++ RT + R F+ F N AD + A
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFENPADAKNAA 65
Query: 127 DEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVP 186
+M G ++ +K+ K + S PP RS G+ G G +P
Sbjct: 66 KDMNGKSLHGKAIKVEQAKKPSFQSGGR-RRPPASSRNRSPSGSLRSARGSRGGTRGWLP 124
Query: 187 SQNSELVLTPNVPDIMV 203
SQ L PD+ +
Sbjct: 125 SQEGHLDDGGYTPDLKM 141
>sp|A6NEQ0|RBY1E_HUMAN RNA-binding motif protein, Y chromosome, family 1 member E OS=Homo
sapiens GN=RBMY1E PE=2 SV=1
Length = 496
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 5/137 (3%)
Query: 67 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 126
L++G L+ + +E L FG+ GPI+ V ++ RT + R F+ F N AD + A
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFENPADAKNAA 65
Query: 127 DEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVP 186
+M G ++ +K+ K + S PP RS G+ G G +P
Sbjct: 66 KDMNGKSLHGKAIKVEQAKKPSFQSGGR-RRPPASSRNRSPSGSLRSARGSRGGTRGWLP 124
Query: 187 SQNSELVLTPNVPDIMV 203
SQ L PD+ +
Sbjct: 125 SQEGHLDDGGYTPDLKM 141
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 55 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 114
GS DG+ ++VG + P V + L + F +FG + SVKI + CGFV
Sbjct: 311 GSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKI---------PVGKGCGFV 361
Query: 115 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 146
F +R + A + + G V+ + +++ WG+S
Sbjct: 362 QFADRKSAEDAIESLNGTVIGKNTVRLSWGRS 393
Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 15/114 (13%)
Query: 67 LYVGNLSPQVDENFLLRTFG-RFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 125
++VG+LSP V + L TF R+ + S K++ + R + GFV F + + A
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVV---IDSNTGRSKGYGFVRFGDENERSRA 260
Query: 126 KDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSG 179
EM G ++++G +A P +A+ + VIL+G G
Sbjct: 261 LTEMNGAYCSNRQMRVG----IATPKRAIANQ-------QQHSSQAVILAGGHG 303
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 55 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 114
GS DD L+VG+L +DE +L F G ++SVK++ + + GFV
Sbjct: 102 GSGDD----VKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQ---SEGYGFV 154
Query: 115 AFMNRADGQAAKDEMQGVVV 134
F++RA + G V+
Sbjct: 155 EFLSRAAAEEVLQNYSGSVM 174
>sp|P0DJD3|RBY1A_HUMAN RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Homo
sapiens GN=RBMY1A1 PE=1 SV=1
Length = 496
Score = 53.1 bits (126), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 5/137 (3%)
Query: 67 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 126
L++G L+ + +E L FG+ GPI+ V ++ RT + R F+ F N AD + A
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTS----KSRGFAFITFENPADAKNAA 65
Query: 127 DEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVP 186
+M G ++ +K+ K + S PP RS G+ G G +P
Sbjct: 66 KDMNGKSLHGKAIKVEQAKKPSFQSGGR-RRPPASSRNRSPSGSLRSARGSRGGTRGWLP 124
Query: 187 SQNSELVLTPNVPDIMV 203
S L PD+ +
Sbjct: 125 SHEGHLDDGGYTPDLKM 141
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 9/88 (10%)
Query: 59 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN 118
+ DP T ++VG L P V E L + F +G + VKI+ + CGFV F
Sbjct: 276 ESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIV---------AGKRCGFVQFGT 326
Query: 119 RADGQAAKDEMQGVVVYEYELKIGWGKS 146
RA + A + G + +++ WG+S
Sbjct: 327 RASAEQALSSLNGTQLGGQSIRLSWGRS 354
Score = 33.5 bits (75), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 67 LYVGNLSPQVDENFLLRTF-GRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 125
++VG+L+ V + L TF + + K++ T+ R + GFV F + ++ A
Sbjct: 178 IFVGDLAADVTDYILQETFKSVYSSVRGAKVV---TDRITGRSKGYGFVKFADESEQLRA 234
Query: 126 KDEMQGVVVYEYELKIGWG---KSVALPSQALPAPPPGQMAIRSKEGATVILSG 176
EM GV+ ++IG K V P +A P T+ + G
Sbjct: 235 MTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGG 288
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 125 AKDEMQGVVVYEYELKIG 142
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 122
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEA 346
Query: 123 QAAKDEMQGVVVYEYELKIGWGK 145
A EM G +V L + +
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQ 369
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
+LYVG+L P V E L F GPI S+++ + RR +V F AD +
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAER 67
Query: 125 AKDEMQGVVVYEYELKIGWGK 145
A D M V+ ++I W +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQ 88
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 66 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 125
N+++ NL +D L TF FG I S K++ + + GFV F + + A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-----DENGSKGYGFVHFETQEAAERA 154
Query: 126 KDEMQGVVVYEYELKIGWGKS 146
++M G+++ + ++ +G KS
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKS 175
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 125 AKDEMQGVVVYEYELKIG 142
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 122
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEA 346
Query: 123 QAAKDEMQGVVVYEYELKIGWGK 145
A EM G +V L + +
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQ 369
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
+LYVG+L P V E L F GPI S+++ + RR +V F AD +
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAER 67
Query: 125 AKDEMQGVVVYEYELKIGWGK 145
A D M V+ ++I W +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQ 88
Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 66 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 125
N+++ NL +D L TF FG I S K++ + + GFV F + + A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-----DENGSKGYGFVHFETQEAAERA 154
Query: 126 KDEMQGVVVYEYELKIGWGKS 146
++M G+++ + ++ +G KS
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKS 175
>sp|Q8CH02|SUGP1_MOUSE SURP and G-patch domain-containing protein 1 OS=Mus musculus
GN=Sugp1 PE=1 SV=1
Length = 643
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 200 DIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYY 257
+I V PPE R VI+ LA +V +GG E+ ME + NP F FL + S+E YY
Sbjct: 173 EIKVSPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYY 230
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 203 VIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLY 262
V PPED +++ + LA ++ DGG E ++ R N F+FL++ S+ + YY +L
Sbjct: 251 VSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLD 310
Query: 263 SF 264
F
Sbjct: 311 EF 312
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 125 AKDEMQGVVVYEYELKIG 142
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 122
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEA 346
Query: 123 QAAKDEMQGVVVYEYELKIGWGK 145
A EM G +V L + +
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQ 369
Score = 41.6 bits (96), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
+LYVG+L P E L F GPI S+++ + RR +V F AD +
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAER 67
Query: 125 AKDEMQGVVVYEYELKIGWGK 145
A D M V+ ++I W +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQ 88
Score = 38.9 bits (89), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 66 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 125
N+++ NL +D L TF FG I S K++ + + GFV F + + A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-----DENGSKGYGFVHFETQEAAERA 154
Query: 126 KDEMQGVVVYEYELKIGWGKS 146
++M G+++ + ++ +G KS
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKS 175
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 125 AKDEMQGVVVYEYELKIG 142
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 122
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEA 346
Query: 123 QAAKDEMQGVVVYEYELKIGWGK 145
A EM G +V L + +
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQ 369
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
+LYVG+L P V E L F GPI S+++ + RR +V F AD +
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAER 67
Query: 125 AKDEMQGVVVYEYELKIGWGK 145
A D M V+ ++I W +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQ 88
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 66 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 125
N+++ NL +D L TF FG I S K++ + + GFV F + + A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-----DENGSKGYGFVHFETQEAAERA 154
Query: 126 KDEMQGVVVYEYELKIGWGKS 146
++M G+++ + ++ +G KS
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKS 175
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
TN+Y+ N +D+ L FG+FGP SVK+M +E + + GFV+F D Q
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM----TDESGKSKGFGFVSFERHEDAQK 246
Query: 125 AKDEMQGVVVYEYELKIG 142
A DEM G + ++ +G
Sbjct: 247 AVDEMNGKELNGKQIYVG 264
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADG 122
Q NLYV NL +D+ L + F FG I S K+M E R + GFV F + +
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMM-----EGGRSKGFGFVCFSSPEEA 346
Query: 123 QAAKDEMQGVVVYEYELKIGWGK 145
A EM G +V L + +
Sbjct: 347 TKAVTEMNGRIVATKPLYVALAQ 369
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQA 124
+LYVG+L P V E L F GPI S+++ + RR +V F AD +
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVC---RDMITRRSLGYAYVNFQQPADAER 67
Query: 125 AKDEMQGVVVYEYELKIGWGK 145
A D M V+ ++I W +
Sbjct: 68 ALDTMNFDVIKGKPVRIMWSQ 88
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 66 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 125
N+++ NL +D L TF FG I S K++ + + GFV F + + A
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-----DENGSKGYGFVHFETQEAAERA 154
Query: 126 KDEMQGVVVYEYELKIGWGKS 146
++M G+++ + ++ +G KS
Sbjct: 155 IEKMNGMLLNDRKVFVGRFKS 175
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 55 GSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 114
G+ + DP T ++VG + V E+ L FG+FG + VKI + CGFV
Sbjct: 268 GNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI---------PAGKRCGFV 318
Query: 115 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 146
+ NRA + A + G + +++ WG+S
Sbjct: 319 QYANRACAEQALSVLNGTQLGGQSIRLSWGRS 350
Score = 39.3 bits (90), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 66 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRA 120
+L++G+L P +DEN+L+ FG G + K++ ++ GF+ F+N A
Sbjct: 81 SLWIGDLQPWMDENYLMNVFGLTGEATAAKVI---RNKQNGYSEGYGFIEFVNHA 132
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 59 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN 118
D DP T ++VG L V ++ L FG+FG + VKI + CGFV + N
Sbjct: 254 DNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKI---------PPGKRCGFVQYAN 304
Query: 119 RADGQAAKDEMQGVVVYEYELKIGWGKS 146
+A + A + G + +++ WG+S
Sbjct: 305 KASAEHALSVLNGTQLGGQSIRLSWGRS 332
Score = 36.2 bits (82), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 67 LYVGNLSPQVDENFLLRTFGR-FGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 125
++VG+L+P+V + L TF +G + K++ RT R + GFV F + + A
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTT---GRSKGYGFVRFADENEQMRA 212
Query: 126 KDEMQGVVVYEYELKIGWGKSVALPSQALPAPP 158
EM G ++IG A ALP P
Sbjct: 213 MTEMNGQYCSTRPMRIG----PAANKNALPMQP 241
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 40.8 bits (94), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 79/153 (51%), Gaps = 16/153 (10%)
Query: 700 EEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIH---RKRLESEYGLADPNEDVS 756
E+ ++K R EV Y+E +++R +K E++ K + +KR ++D+
Sbjct: 715 EKDQEKGRDKEVEKGRYKERVKDR-VKEQEKVRDKEQVKGRDKKR----------SKDLE 763
Query: 757 GNKRRDRRDEILDSRKRHRSQSQSESPPPRKSSIRDRERESDLDRDRERHRDRDRAHDFE 816
+ +D+ E+ + R ++Q + K ++ E+ + DRD+E + R++ D E
Sbjct: 764 KCREKDQDKEL--EKDREKNQDKELEKGREKDQDKELEKGREKDRDKEMEKAREKDQDKE 821
Query: 817 SERGRERREKSGSRERDDHDRDRGRDRDRDRRR 849
E+GRE+ + + + DRD+ R++DRD+ R
Sbjct: 822 LEKGREKDQDKELEKGQEKDRDKVREKDRDKVR 854
Score = 40.8 bits (94), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 43/61 (70%), Gaps = 4/61 (6%)
Query: 791 RDRERESDLDRDRERHRDRDRAHDFESERGRER-REKSGSRERD---DHDRDRGRDRDRD 846
+DR++ + DRD+ R +DRD+ + + ++ RE+ R+K ++R+ + DRD+GR++DRD
Sbjct: 840 KDRDKVREKDRDKVRDKDRDKVREKDRDKVREKDRDKLREKDREKIRERDRDKGREKDRD 899
Query: 847 R 847
+
Sbjct: 900 K 900
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 44/62 (70%), Gaps = 4/62 (6%)
Query: 791 RDRERESDLDRDRERHRDRDRAHDFESERGRER---REKSGSRERDDHDRDRGRDRDRDR 847
+DR++ + DRD+ R +DR++ + + ++GRE+ +E+ +RE+ D +++R +DRD++R
Sbjct: 864 KDRDKVREKDRDKLREKDREKIRERDRDKGREKDRDKEQVKTREK-DQEKERLKDRDKER 922
Query: 848 RR 849
+
Sbjct: 923 EK 924
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 40.0 bits (92), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 777 QSQSESPPPRKSSIRDRERESDLDRDRERHRDRDRAHDFESERGRERREKSGSRERDDHD 836
+ Q +S P R+S RD ERE+ +DRER + RD+ + +SE R R++ G + ++
Sbjct: 30 EDQLDSKPKRES--RDHERETSRSKDREREKGRDKDRERDSEVSRRSRDRDGEKSKE-RS 86
Query: 837 RDRGRDRDRDRRRR 850
RD+ RD R+R R
Sbjct: 87 RDKDRDH-RERHHR 99
>sp|Q6PGZ3|MIPT3_DANRE TRAF3-interacting protein 1 OS=Danio rerio GN=traf3ip1 PE=2 SV=1
Length = 629
Score = 37.7 bits (86), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 12/59 (20%)
Query: 791 RDRERESDLDRDRERHRDRDRAHDFESERGRERREKSGSRERDDHDRDRGRDRDRDRRR 849
R+RER D DRD+++ RDR++ E ER RE+ DR+R ++R+RD+ R
Sbjct: 204 RERERTKDRDRDKDKSRDREKDKTREKEREREK------------DRNREKERERDKDR 250
>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
Length = 5560
Score = 37.0 bits (84), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 64 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQ 123
T +++ + +V E+FL F RFG + V I R R V + + Q
Sbjct: 733 TNCVWIDGVDEKVSESFLQSQFTRFGAVTKVSI---------DRNRQLALVLYDQVQNAQ 783
Query: 124 AAKDEMQGVVVYEYELKIGWG 144
AA +M+G ++ +L++ +
Sbjct: 784 AAVKDMRGTILRRKKLQVDFA 804
>sp|P0C196|PPIL4_USTMA Peptidyl-prolyl cis-trans isomerase-like 4 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=CYP6 PE=3 SV=1
Length = 551
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 51 GKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRN 110
G LP F + P L+V L+P + L F RFG I S +++ + + +
Sbjct: 250 GDLP--FAEIRPPENILFVCKLNPVTRSDDLELIFSRFGKILSCEVIKDKKTGDSLQY-- 305
Query: 111 CGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 148
F+ F + D + A +MQ V+V + + + + +SV+
Sbjct: 306 -AFIEFDKKDDAERAYFKMQNVLVDDRRIWVDFSQSVS 342
>sp|Q5XIN3|MIPT3_RAT TRAF3-interacting protein 1 OS=Rattus norvegicus GN=Traf3ip1 PE=2
SV=1
Length = 653
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 24/83 (28%)
Query: 791 RDRERESDLDRDRERHRDRDRAHDFESERGRERREK-----------------------S 827
RD+E+ + DRDR R DRDR D E E+ R R ++
Sbjct: 197 RDKEKAKEADRDRHREPDRDRNRDGEREKARARAKQDRDRNNKDRDRETERDRDRDRRSD 256
Query: 828 GSRERDDHDRDRGRDRDRDRRRR 850
G +E++ +DR RD+ +DR RR
Sbjct: 257 GGKEKE-RQKDRDRDKGKDRERR 278
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana
GN=RNU1 PE=1 SV=1
Length = 427
Score = 35.4 bits (80), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 60 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNR 119
GDP T L+V L+ + E+ + R F +GPI V ++ T++ + + F+ +M+
Sbjct: 134 GDPYKT-LFVSRLNYESSESKIKREFESYGPIKRVHLV---TDQLTNKPKGYAFIEYMHT 189
Query: 120 ADGQAAKDEMQGVVV 134
D +AA + G +
Sbjct: 190 RDMKAAYKQADGQKI 204
>sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Triticum aestivum
GN=U2AF65A PE=2 SV=1
Length = 591
Score = 35.0 bits (79), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/37 (59%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 789 SIRDRERESDLDRDRERHR----DRDRAHDFESERGR 821
S RDR RE D D+DRERHR DR+R D ES R R
Sbjct: 36 SSRDRVRERDEDKDRERHRRHGEDRERYRDRESVRER 72
>sp|P0CP88|PPIL4_CRYNJ Peptidyl-prolyl cis-trans isomerase-like 4 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=CYP6 PE=3 SV=1
Length = 504
Score = 34.7 bits (78), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 51 GKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRN 110
G LP F P L+V L+P + L F RFG I S +++ + + +
Sbjct: 234 GDLP--FAAVRPPENILFVCKLNPVTQDEDLELIFSRFGKILSCEVVRDKKSGDSLQY-- 289
Query: 111 CGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 148
F+ F R + A +MQ V+V + + + + +SVA
Sbjct: 290 -AFIEFDEREAAEQAYFKMQNVLVDDRRIWVDFSQSVA 326
>sp|P0CP89|PPIL4_CRYNB Peptidyl-prolyl cis-trans isomerase-like 4 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=CYP6 PE=3 SV=1
Length = 504
Score = 34.7 bits (78), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 51 GKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRN 110
G LP F P L+V L+P + L F RFG I S +++ + + +
Sbjct: 234 GDLP--FAAVRPPENILFVCKLNPVTQDEDLELIFSRFGKILSCEVVRDKKSGDSLQY-- 289
Query: 111 CGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 148
F+ F R + A +MQ V+V + + + + +SVA
Sbjct: 290 -AFIEFDEREAAEQAYFKMQNVLVDDRRIWVDFSQSVA 326
>sp|Q9AS36|CCL11_ORYSJ Cyclin-L1-1 OS=Oryza sativa subsp. japonica GN=CYCL1-1 PE=2 SV=1
Length = 427
Score = 34.7 bits (78), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 9/63 (14%)
Query: 792 DRERESD--LDRDRE-RHRDRDRAHDF-ESERGRERREKSGSRERDDH-DRDRGRDRDRD 846
DRERE D DRDR+ RH +DR+ + + E+ R R SR+R DH RD+DR
Sbjct: 369 DRERERDREADRDRQRRHHSKDRSSGYSDKEKSRHR----SSRDRGDHYSSHSSRDKDRH 424
Query: 847 RRR 849
RR+
Sbjct: 425 RRQ 427
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 333,599,682
Number of Sequences: 539616
Number of extensions: 15340084
Number of successful extensions: 69640
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 1308
Number of HSP's that attempted gapping in prelim test: 44580
Number of HSP's gapped (non-prelim): 10902
length of query: 852
length of database: 191,569,459
effective HSP length: 126
effective length of query: 726
effective length of database: 123,577,843
effective search space: 89717514018
effective search space used: 89717514018
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)