Query 003053
Match_columns 852
No_of_seqs 688 out of 3608
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 16:06:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0151 Predicted splicing reg 100.0 1E-115 3E-120 973.0 37.0 647 34-750 145-794 (877)
2 smart00582 RPR domain present 99.9 1.7E-22 3.7E-27 191.9 10.3 120 330-461 2-121 (121)
3 KOG4368 Predicted RNA binding 99.8 3.2E-18 6.9E-23 189.8 21.7 133 324-467 100-238 (757)
4 KOG0148 Apoptosis-promoting RN 99.8 2.6E-18 5.6E-23 176.4 11.7 131 2-150 104-241 (321)
5 KOG2669 Regulator of nuclear m 99.7 5.7E-18 1.2E-22 181.6 10.8 128 324-464 3-130 (325)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.7E-16 3.7E-21 177.3 16.2 81 64-147 269-349 (352)
7 TIGR01659 sex-lethal sex-letha 99.7 4.7E-16 1E-20 172.9 16.3 120 2-149 149-277 (346)
8 TIGR01645 half-pint poly-U bin 99.7 4.3E-16 9.3E-21 182.0 15.3 130 2-148 149-285 (612)
9 PLN03134 glycine-rich RNA-bind 99.6 1.3E-14 2.8E-19 142.2 14.5 84 62-148 32-115 (144)
10 cd03562 CID CID (CTD-Interacti 99.6 6.4E-15 1.4E-19 138.6 10.2 108 330-453 4-114 (114)
11 PF01805 Surp: Surp module; I 99.6 1E-15 2.2E-20 125.2 1.8 54 211-264 1-54 (55)
12 TIGR01642 U2AF_lg U2 snRNP aux 99.5 5.7E-14 1.2E-18 164.8 16.0 141 2-148 223-376 (509)
13 TIGR01622 SF-CC1 splicing fact 99.5 5.3E-14 1.1E-18 162.9 14.0 129 2-147 131-266 (457)
14 TIGR01628 PABP-1234 polyadenyl 99.5 7E-14 1.5E-18 166.2 11.3 135 2-147 219-364 (562)
15 smart00648 SWAP Suppressor-of- 99.5 1.3E-14 2.7E-19 118.3 2.4 52 213-265 2-53 (54)
16 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 2.8E-13 6.2E-18 151.4 13.4 119 2-148 45-172 (352)
17 KOG0131 Splicing factor 3b, su 99.4 2.2E-13 4.8E-18 133.4 6.9 121 2-149 51-179 (203)
18 PF00076 RRM_1: RNA recognitio 99.4 1E-12 2.2E-17 111.2 9.3 70 67-140 1-70 (70)
19 TIGR01648 hnRNP-R-Q heterogene 99.4 1.3E-12 2.8E-17 152.9 13.3 116 2-148 182-308 (578)
20 KOG0127 Nucleolar protein fibr 99.4 1E-12 2.2E-17 146.2 10.9 142 2-149 47-198 (678)
21 TIGR01659 sex-lethal sex-letha 99.4 1E-12 2.3E-17 146.2 10.5 84 60-146 103-186 (346)
22 TIGR01628 PABP-1234 polyadenyl 99.4 1.3E-12 2.9E-17 155.3 12.1 118 2-146 42-166 (562)
23 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 6E-12 1.3E-16 146.9 17.2 81 61-149 272-353 (481)
24 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 3.3E-12 7.1E-17 149.1 14.5 139 2-147 313-480 (481)
25 KOG0122 Translation initiation 99.4 3.5E-12 7.6E-17 130.3 11.4 82 63-147 188-269 (270)
26 KOG0145 RNA-binding protein EL 99.3 1.3E-12 2.8E-17 133.7 7.4 117 3-147 84-209 (360)
27 KOG0127 Nucleolar protein fibr 99.3 6.9E-12 1.5E-16 139.7 12.6 80 64-146 292-377 (678)
28 KOG0149 Predicted RNA-binding 99.3 4.3E-12 9.3E-17 129.3 9.8 83 60-146 8-90 (247)
29 TIGR01642 U2AF_lg U2 snRNP aux 99.3 9.8E-12 2.1E-16 146.0 14.0 142 2-145 337-500 (509)
30 KOG0125 Ataxin 2-binding prote 99.3 8.4E-12 1.8E-16 132.0 11.7 90 64-158 96-185 (376)
31 KOG0117 Heterogeneous nuclear 99.3 5E-12 1.1E-16 138.2 8.9 74 65-149 260-333 (506)
32 PF04818 CTD_bind: RNA polymer 99.3 1.1E-12 2.4E-17 110.7 2.5 64 379-452 1-64 (64)
33 KOG0121 Nuclear cap-binding pr 99.3 5.5E-12 1.2E-16 117.1 6.8 81 61-144 33-113 (153)
34 KOG0124 Polypyrimidine tract-b 99.3 1.1E-11 2.4E-16 131.8 9.3 127 2-145 155-288 (544)
35 PLN03120 nucleic acid binding 99.3 2.4E-11 5.2E-16 127.9 11.5 79 64-149 4-82 (260)
36 KOG0111 Cyclophilin-type pepti 99.3 4.9E-12 1.1E-16 126.8 5.7 85 63-150 9-93 (298)
37 PLN03213 repressor of silencin 99.2 1.9E-11 4.2E-16 134.3 9.8 79 62-147 8-88 (759)
38 TIGR01645 half-pint poly-U bin 99.2 1.9E-11 4.2E-16 143.4 10.1 79 63-144 106-184 (612)
39 KOG4207 Predicted splicing fac 99.2 8.9E-12 1.9E-16 124.2 6.1 82 64-148 13-94 (256)
40 KOG0144 RNA-binding protein CU 99.2 1E-11 2.3E-16 135.1 7.2 122 2-149 76-208 (510)
41 KOG0107 Alternative splicing f 99.2 2.1E-11 4.6E-16 119.0 8.1 78 63-148 9-86 (195)
42 KOG0110 RNA-binding protein (R 99.2 1.6E-11 3.5E-16 141.0 7.7 127 3-148 561-694 (725)
43 KOG0148 Apoptosis-promoting RN 99.2 2.8E-11 6E-16 125.1 7.3 81 65-148 63-143 (321)
44 PF14259 RRM_6: RNA recognitio 99.2 8.8E-11 1.9E-15 100.1 9.2 70 67-140 1-70 (70)
45 KOG0145 RNA-binding protein EL 99.2 1.1E-10 2.4E-15 119.7 11.2 86 60-148 37-122 (360)
46 TIGR01648 hnRNP-R-Q heterogene 99.2 8.6E-11 1.9E-15 137.8 11.9 78 63-144 57-135 (578)
47 KOG0123 Polyadenylate-binding 99.2 7.4E-11 1.6E-15 132.3 10.7 110 3-148 38-154 (369)
48 KOG0126 Predicted RNA-binding 99.2 6.9E-12 1.5E-16 122.8 1.5 84 63-149 34-117 (219)
49 KOG0113 U1 small nuclear ribon 99.1 1.8E-10 3.9E-15 120.8 10.7 85 62-149 99-183 (335)
50 KOG0146 RNA-binding protein ET 99.1 6.7E-11 1.4E-15 121.7 5.2 88 58-148 279-366 (371)
51 KOG0124 Polypyrimidine tract-b 99.1 7E-11 1.5E-15 125.8 5.4 81 65-150 114-194 (544)
52 smart00362 RRM_2 RNA recogniti 99.1 5.8E-10 1.3E-14 93.2 9.7 71 66-141 1-71 (72)
53 KOG0117 Heterogeneous nuclear 99.1 5E-10 1.1E-14 122.8 10.3 90 54-146 73-163 (506)
54 KOG0105 Alternative splicing f 99.1 1.1E-09 2.3E-14 107.7 11.5 79 63-147 5-83 (241)
55 KOG0130 RNA-binding protein RB 99.1 2.4E-10 5.1E-15 107.1 6.5 83 63-148 71-153 (170)
56 PLN03121 nucleic acid binding 99.1 9E-10 1.9E-14 114.4 11.4 76 62-144 3-78 (243)
57 COG0724 RNA-binding proteins ( 99.1 5.4E-10 1.2E-14 117.5 10.0 80 64-146 115-194 (306)
58 KOG4676 Splicing factor, argin 99.0 3.4E-11 7.3E-16 129.7 0.4 61 673-733 89-152 (479)
59 KOG0114 Predicted RNA-binding 99.0 8.1E-10 1.8E-14 99.2 8.8 78 63-146 17-94 (124)
60 TIGR01622 SF-CC1 splicing fact 99.0 7.1E-10 1.5E-14 128.6 10.9 81 62-146 87-167 (457)
61 smart00360 RRM RNA recognition 99.0 1.2E-09 2.5E-14 90.9 8.5 71 69-142 1-71 (71)
62 KOG0131 Splicing factor 3b, su 99.0 3.7E-10 7.9E-15 111.1 5.7 80 63-145 8-87 (203)
63 KOG0108 mRNA cleavage and poly 99.0 8.6E-10 1.9E-14 124.9 8.7 82 65-149 19-100 (435)
64 PF12243 CTK3: CTD kinase subu 99.0 3.7E-09 8.1E-14 102.2 11.7 131 325-464 5-136 (139)
65 KOG0147 Transcriptional coacti 99.0 5.3E-10 1.2E-14 125.7 6.2 78 67-147 281-358 (549)
66 KOG0109 RNA-binding protein LA 99.0 1.3E-09 2.8E-14 114.0 7.6 110 1-148 35-151 (346)
67 cd00590 RRM RRM (RNA recogniti 98.9 5.1E-09 1.1E-13 87.9 9.8 74 66-143 1-74 (74)
68 KOG4676 Splicing factor, argin 98.9 2E-10 4.2E-15 123.9 1.3 74 66-141 9-83 (479)
69 PF13893 RRM_5: RNA recognitio 98.9 4.5E-09 9.8E-14 85.9 8.8 56 81-144 1-56 (56)
70 KOG0109 RNA-binding protein LA 98.9 2.4E-09 5.3E-14 111.9 7.1 75 65-150 3-77 (346)
71 KOG1847 mRNA splicing factor [ 98.9 1.4E-08 3E-13 115.1 13.3 59 201-260 178-236 (878)
72 KOG0144 RNA-binding protein CU 98.8 4.5E-09 9.8E-14 114.9 7.6 84 60-146 30-116 (510)
73 KOG0123 Polyadenylate-binding 98.8 2.3E-09 4.9E-14 120.4 5.0 135 2-147 208-349 (369)
74 KOG4206 Spliceosomal protein s 98.8 2.1E-08 4.6E-13 102.4 10.9 135 1-145 51-220 (221)
75 KOG0415 Predicted peptidyl pro 98.8 5.1E-09 1.1E-13 111.7 6.5 87 60-149 235-321 (479)
76 smart00361 RRM_1 RNA recogniti 98.8 1.4E-08 3E-13 87.2 8.1 61 78-141 2-69 (70)
77 KOG0153 Predicted RNA-binding 98.8 1.5E-08 3.3E-13 108.5 9.2 78 60-146 224-302 (377)
78 KOG0132 RNA polymerase II C-te 98.8 1.1E-08 2.3E-13 118.8 8.0 79 63-150 420-498 (894)
79 KOG4206 Spliceosomal protein s 98.7 3.1E-08 6.7E-13 101.3 7.9 77 66-148 11-91 (221)
80 KOG4205 RNA-binding protein mu 98.7 3.2E-08 7E-13 107.9 6.7 83 63-149 96-178 (311)
81 KOG4208 Nucleolar RNA-binding 98.5 1.8E-07 3.9E-12 94.3 8.0 79 62-143 47-126 (214)
82 KOG0132 RNA polymerase II C-te 98.5 2.7E-06 5.9E-11 99.3 18.3 132 326-468 3-140 (894)
83 KOG0110 RNA-binding protein (R 98.5 2.8E-07 6E-12 106.8 10.2 81 65-145 516-596 (725)
84 KOG4661 Hsp27-ERE-TATA-binding 98.5 2.9E-07 6.3E-12 103.3 9.7 83 62-147 403-485 (940)
85 KOG0226 RNA-binding proteins [ 98.5 2.1E-07 4.6E-12 96.2 6.1 77 63-142 189-265 (290)
86 KOG1457 RNA binding protein (c 98.4 1.1E-06 2.4E-11 89.2 10.1 85 63-149 33-120 (284)
87 KOG0146 RNA-binding protein ET 98.3 9.5E-07 2.1E-11 91.6 7.3 80 63-146 18-100 (371)
88 KOG0533 RRM motif-containing p 98.3 1.5E-06 3.3E-11 91.5 8.8 85 61-149 80-164 (243)
89 KOG4212 RNA-binding protein hn 98.3 1E-06 2.3E-11 96.6 6.7 77 60-144 532-608 (608)
90 KOG4212 RNA-binding protein hn 98.3 3.3E-06 7.2E-11 92.8 9.6 76 63-142 43-119 (608)
91 KOG1548 Transcription elongati 98.2 6.4E-06 1.4E-10 88.7 10.0 83 61-147 131-221 (382)
92 KOG4205 RNA-binding protein mu 98.1 2.1E-06 4.6E-11 93.8 5.1 83 63-149 5-87 (311)
93 KOG0106 Alternative splicing f 98.1 2.7E-06 5.9E-11 87.9 4.1 71 65-146 2-72 (216)
94 KOG4209 Splicing factor RNPS1, 98.0 1.4E-05 3E-10 84.4 7.1 83 61-147 98-180 (231)
95 KOG4454 RNA binding protein (R 97.9 3.7E-06 8.1E-11 85.3 2.2 76 63-143 8-83 (267)
96 KOG0116 RasGAP SH3 binding pro 97.9 3.8E-05 8.2E-10 87.2 10.3 79 64-146 288-366 (419)
97 KOG0120 Splicing factor U2AF, 97.9 1.4E-05 3E-10 91.7 6.5 80 64-146 289-368 (500)
98 KOG0106 Alternative splicing f 97.9 1.6E-05 3.4E-10 82.3 5.4 124 2-141 35-165 (216)
99 KOG1190 Polypyrimidine tract-b 97.9 5.5E-05 1.2E-09 83.1 9.8 78 64-149 297-375 (492)
100 KOG4660 Protein Mei2, essentia 97.8 1.7E-05 3.6E-10 90.4 4.7 72 61-140 72-143 (549)
101 PF04059 RRM_2: RNA recognitio 97.6 0.00031 6.6E-09 64.2 8.6 81 65-148 2-88 (97)
102 KOG0120 Splicing factor U2AF, 97.6 0.0002 4.3E-09 82.4 8.8 140 2-143 331-488 (500)
103 KOG1457 RNA binding protein (c 97.4 0.00011 2.4E-09 75.1 4.0 64 64-134 210-273 (284)
104 PF11608 Limkain-b1: Limkain b 97.4 0.00058 1.3E-08 60.0 7.3 68 65-145 3-75 (90)
105 KOG1995 Conserved Zn-finger pr 97.4 0.00027 5.8E-09 77.2 6.0 85 61-148 63-155 (351)
106 KOG0112 Large RNA-binding prot 97.1 0.0011 2.4E-08 79.5 7.9 82 62-152 453-536 (975)
107 COG5175 MOT2 Transcriptional r 97.1 0.0012 2.6E-08 71.0 7.4 80 66-146 116-202 (480)
108 KOG4210 Nuclear localization s 97.1 0.0007 1.5E-08 73.9 5.5 82 63-148 184-265 (285)
109 KOG1190 Polypyrimidine tract-b 97.0 0.005 1.1E-07 68.1 10.9 128 10-146 350-490 (492)
110 KOG0147 Transcriptional coacti 96.9 0.00044 9.6E-09 78.9 2.6 80 61-144 176-255 (549)
111 KOG0129 Predicted RNA-binding 96.6 0.0059 1.3E-07 69.6 8.3 63 63-128 369-432 (520)
112 PF08777 RRM_3: RNA binding mo 96.6 0.0039 8.6E-08 58.0 5.8 59 65-132 2-60 (105)
113 KOG4368 Predicted RNA binding 96.6 0.0096 2.1E-07 68.4 9.7 45 376-420 205-257 (757)
114 KOG1855 Predicted RNA-binding 96.6 0.0021 4.5E-08 71.5 4.3 77 58-134 225-311 (484)
115 KOG0112 Large RNA-binding prot 96.3 0.00093 2E-08 80.0 -0.4 100 60-163 368-467 (975)
116 KOG1456 Heterogeneous nuclear 96.2 0.018 3.8E-07 63.2 8.7 78 64-149 120-201 (494)
117 KOG4211 Splicing factor hnRNP- 96.2 0.015 3.2E-07 66.1 8.4 76 63-145 9-84 (510)
118 KOG1456 Heterogeneous nuclear 96.1 0.041 8.8E-07 60.5 10.7 82 60-149 283-365 (494)
119 KOG0151 Predicted splicing reg 96.1 0.056 1.2E-06 63.8 12.4 25 511-535 549-574 (877)
120 COG0724 RNA-binding proteins ( 95.9 0.016 3.5E-07 60.6 7.0 95 1-97 156-258 (306)
121 PF14605 Nup35_RRM_2: Nup53/35 95.6 0.024 5.2E-07 46.1 5.1 52 65-126 2-53 (53)
122 KOG4849 mRNA cleavage factor I 95.5 0.011 2.3E-07 64.2 3.2 74 65-141 81-156 (498)
123 KOG2314 Translation initiation 95.4 0.029 6.3E-07 64.5 6.7 76 64-143 58-140 (698)
124 KOG0129 Predicted RNA-binding 95.3 0.036 7.8E-07 63.5 6.9 76 63-142 258-338 (520)
125 KOG3152 TBP-binding protein, a 95.2 0.014 3E-07 61.3 3.2 75 63-138 73-157 (278)
126 KOG1548 Transcription elongati 95.2 0.052 1.1E-06 59.3 7.6 74 63-143 264-348 (382)
127 PF02037 SAP: SAP domain; Int 95.2 0.024 5.3E-07 42.0 3.6 33 517-549 2-34 (35)
128 KOG0796 Spliceosome subunit [R 95.1 0.019 4.1E-07 62.4 4.0 7 692-698 207-213 (319)
129 PF04847 Calcipressin: Calcipr 95.1 0.052 1.1E-06 55.6 7.0 63 78-149 9-73 (184)
130 KOG0115 RNA-binding protein p5 95.1 0.082 1.8E-06 55.8 8.3 64 65-132 32-95 (275)
131 PF05172 Nup35_RRM: Nup53/35/4 94.9 0.093 2E-06 48.4 7.1 79 64-145 6-90 (100)
132 KOG4307 RNA binding protein RB 94.6 0.093 2E-06 61.8 7.9 75 65-143 868-943 (944)
133 KOG4211 Splicing factor hnRNP- 94.5 0.075 1.6E-06 60.6 6.8 77 64-144 103-179 (510)
134 smart00513 SAP Putative DNA-bi 94.5 0.057 1.2E-06 39.9 4.0 33 517-549 2-34 (35)
135 KOG2193 IGF-II mRNA-binding pr 94.4 0.035 7.5E-07 61.8 3.6 74 66-148 3-77 (584)
136 KOG0105 Alternative splicing f 94.2 0.46 1E-05 47.9 10.7 125 3-141 46-184 (241)
137 KOG2888 Putative RNA binding p 93.5 0.026 5.7E-07 60.9 0.7 15 358-372 82-96 (453)
138 PF15023 DUF4523: Protein of u 93.4 0.28 6E-06 47.6 7.3 75 60-145 82-160 (166)
139 KOG2416 Acinus (induces apopto 93.4 0.1 2.2E-06 60.6 5.3 79 62-149 442-524 (718)
140 PF08952 DUF1866: Domain of un 93.0 0.42 9E-06 46.9 8.1 53 80-144 52-104 (146)
141 KOG1996 mRNA splicing factor [ 92.6 0.29 6.2E-06 52.5 6.7 62 79-143 301-363 (378)
142 KOG1847 mRNA splicing factor [ 92.4 0.12 2.7E-06 60.2 4.2 57 203-262 418-474 (878)
143 KOG1365 RNA-binding protein Fu 92.4 0.61 1.3E-05 51.7 9.1 75 64-142 280-357 (508)
144 KOG0128 RNA-binding protein SA 92.4 0.16 3.4E-06 61.5 5.0 79 64-146 736-814 (881)
145 KOG2068 MOT2 transcription fac 91.9 0.076 1.7E-06 58.1 1.6 79 65-146 78-162 (327)
146 cd00197 VHS_ENTH_ANTH VHS, ENT 91.4 1.5 3.2E-05 41.2 9.6 99 340-447 17-115 (115)
147 KOG2202 U2 snRNP splicing fact 91.3 0.089 1.9E-06 55.6 1.4 61 80-144 84-145 (260)
148 KOG4574 RNA-binding protein (c 90.4 0.32 7E-06 58.7 4.9 78 63-149 297-376 (1007)
149 KOG4246 Predicted DNA-binding 88.6 0.2 4.4E-06 60.0 1.5 15 655-669 252-266 (1194)
150 PF08675 RNA_bind: RNA binding 88.3 1.4 3.1E-05 39.2 6.1 57 63-130 7-63 (87)
151 KOG0835 Cyclin L [General func 87.6 0.69 1.5E-05 50.7 4.6 16 514-529 208-223 (367)
152 KOG0128 RNA-binding protein SA 87.6 0.058 1.3E-06 65.0 -3.8 69 64-135 667-735 (881)
153 KOG2135 Proteins containing th 87.6 0.4 8.7E-06 54.6 2.9 75 64-148 372-447 (526)
154 KOG4246 Predicted DNA-binding 87.5 0.33 7.2E-06 58.3 2.3 13 593-605 197-209 (1194)
155 KOG0415 Predicted peptidyl pro 85.6 0.21 4.6E-06 54.7 -0.5 47 672-719 277-327 (479)
156 KOG0796 Spliceosome subunit [R 85.4 0.45 9.8E-06 52.0 1.9 16 379-394 32-51 (319)
157 KOG4454 RNA binding protein (R 83.2 0.31 6.8E-06 50.4 -0.5 58 72-133 92-149 (267)
158 KOG2548 SWAP mRNA splicing reg 83.1 0.6 1.3E-05 53.7 1.7 7 678-684 318-324 (653)
159 KOG4285 Mitotic phosphoprotein 82.8 1.9 4.1E-05 46.8 5.1 61 67-138 200-260 (350)
160 KOG0835 Cyclin L [General func 82.6 2.7 5.8E-05 46.2 6.2 8 362-369 47-54 (367)
161 KOG0113 U1 small nuclear ribon 81.9 1.9 4.2E-05 46.7 4.8 16 431-446 74-89 (335)
162 smart00361 RRM_1 RNA recogniti 80.6 0.99 2.1E-05 38.4 1.7 27 1-29 36-69 (70)
163 KOG2071 mRNA cleavage and poly 80.4 5.4 0.00012 47.3 8.1 103 328-446 7-110 (579)
164 KOG2548 SWAP mRNA splicing reg 79.8 1 2.2E-05 51.9 2.0 11 494-504 202-212 (653)
165 PF10309 DUF2414: Protein of u 79.2 7.2 0.00016 32.9 6.3 54 65-129 6-62 (62)
166 PLN03134 glycine-rich RNA-bind 78.7 1.4 3.1E-05 43.3 2.4 33 2-36 76-115 (144)
167 KOG4660 Protein Mei2, essentia 78.4 3.5 7.6E-05 48.2 5.7 48 101-148 423-474 (549)
168 KOG4307 RNA binding protein RB 78.0 1.6 3.4E-05 52.0 2.8 77 62-142 432-509 (944)
169 KOG0111 Cyclophilin-type pepti 77.7 1.7 3.6E-05 45.1 2.6 33 2-36 52-91 (298)
170 KOG4019 Calcineurin-mediated s 77.7 2.8 6.2E-05 42.4 4.1 78 64-150 10-93 (193)
171 KOG0965 Predicted RNA-binding 76.7 0.87 1.9E-05 54.4 0.3 59 207-265 528-586 (988)
172 KOG2253 U1 snRNP complex, subu 75.8 3.3 7.1E-05 49.4 4.6 70 61-142 37-106 (668)
173 PF03467 Smg4_UPF3: Smg-4/UPF3 74.4 8.9 0.00019 39.1 6.9 85 63-149 6-100 (176)
174 PF07576 BRAP2: BRCA1-associat 74.0 22 0.00049 33.4 8.9 79 64-147 12-95 (110)
175 PF03880 DbpA: DbpA RNA bindin 72.5 17 0.00036 31.5 7.2 67 66-144 2-74 (74)
176 KOG2318 Uncharacterized conser 68.5 12 0.00026 44.1 6.9 82 62-143 172-304 (650)
177 KOG4210 Nuclear localization s 68.5 3.2 6.9E-05 45.6 2.2 82 63-147 87-168 (285)
178 KOG1365 RNA-binding protein Fu 68.1 14 0.0003 41.5 7.0 72 65-141 162-237 (508)
179 PF01417 ENTH: ENTH domain; I 66.1 30 0.00064 33.0 8.2 96 340-444 20-118 (125)
180 PF13893 RRM_5: RNA recognitio 65.4 3.8 8.2E-05 32.9 1.6 29 2-32 21-56 (56)
181 PF11767 SET_assoc: Histone ly 62.9 26 0.00056 29.9 6.2 55 75-141 11-65 (66)
182 PF00790 VHS: VHS domain; Int 62.0 79 0.0017 30.7 10.5 83 354-449 36-120 (140)
183 KOG2193 IGF-II mRNA-binding pr 57.0 1.7 3.6E-05 49.0 -2.5 75 64-144 80-154 (584)
184 KOG0804 Cytoplasmic Zn-finger 56.8 27 0.00059 40.2 6.8 68 63-135 73-141 (493)
185 PF08312 cwf21: cwf21 domain; 56.4 21 0.00047 28.2 4.3 40 705-745 5-44 (46)
186 KOG1902 Putative signal transd 53.1 7.1 0.00015 43.0 1.5 9 694-702 327-335 (441)
187 KOG1924 RhoA GTPase effector D 51.2 30 0.00065 42.4 6.2 48 321-369 695-742 (1102)
188 smart00288 VHS Domain present 50.3 1.4E+02 0.0031 28.8 10.0 79 355-447 32-111 (133)
189 PF00076 RRM_1: RNA recognitio 48.7 9.4 0.0002 31.3 1.3 22 2-23 39-67 (70)
190 KOG0125 Ataxin 2-binding prote 47.7 9.9 0.00022 41.9 1.6 31 2-34 136-173 (376)
191 cd03561 VHS VHS domain family; 44.5 1.5E+02 0.0032 28.6 9.0 81 355-447 32-112 (133)
192 smart00360 RRM RNA recognition 39.9 17 0.00037 28.9 1.6 26 2-29 38-70 (71)
193 cd03568 VHS_STAM VHS domain fa 39.7 2.5E+02 0.0053 27.7 9.8 79 355-447 32-110 (144)
194 cd03567 VHS_GGA VHS domain fam 39.4 2.2E+02 0.0047 28.0 9.3 82 357-447 35-116 (139)
195 PLN03213 repressor of silencin 36.5 21 0.00045 41.4 1.9 32 2-35 48-88 (759)
196 KOG2591 c-Mpl binding protein, 34.6 1.1E+02 0.0023 36.5 7.1 71 60-140 171-245 (684)
197 KOG2891 Surface glycoprotein [ 34.0 15 0.00033 39.4 0.4 70 65-134 150-247 (445)
198 cd03569 VHS_Hrs_Vps27p VHS dom 33.9 4.1E+02 0.0088 26.1 10.3 79 356-448 37-115 (142)
199 PF07498 Rho_N: Rho terminatio 33.5 62 0.0013 25.1 3.6 34 515-548 1-36 (43)
200 KOG4715 SWI/SNF-related matrix 32.3 4.4E+02 0.0096 29.3 10.9 26 522-550 267-292 (410)
201 KOG0121 Nuclear cap-binding pr 32.3 24 0.00051 34.1 1.3 30 3-34 79-115 (153)
202 PF01603 B56: Protein phosphat 30.2 3.4E+02 0.0074 31.4 10.6 112 320-450 208-326 (409)
203 PF02042 RWP-RK: RWP-RK domain 29.4 73 0.0016 26.0 3.4 29 507-535 15-43 (52)
204 PLN03120 nucleic acid binding 26.9 39 0.00084 36.6 2.0 30 2-34 43-79 (260)
205 KOG4483 Uncharacterized conser 26.4 70 0.0015 36.4 3.8 54 65-127 392-445 (528)
206 KOG3039 Uncharacterized conser 25.8 1.4E+02 0.003 32.1 5.6 32 615-646 163-195 (303)
207 KOG1924 RhoA GTPase effector D 25.0 1.5E+02 0.0032 36.8 6.4 13 403-415 790-802 (1102)
208 PF14733 ACDC: AP2-coincident 23.8 1.5E+02 0.0032 26.7 4.9 19 378-396 8-26 (91)
209 PF10567 Nab6_mRNP_bdg: RNA-re 22.5 1.2E+02 0.0026 33.4 4.6 84 62-145 13-106 (309)
210 smart00540 LEM in nuclear memb 22.4 1.5E+02 0.0033 23.3 4.0 35 516-550 3-41 (44)
211 PF07420 DUF1509: Protein of u 22.1 66 0.0014 35.0 2.6 15 399-413 64-78 (377)
212 KOG0108 mRNA cleavage and poly 21.9 58 0.0013 38.0 2.3 34 2-37 60-100 (435)
213 KOG0126 Predicted RNA-binding 20.1 41 0.00089 34.4 0.5 31 2-34 77-114 (219)
No 1
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=100.00 E-value=1.3e-115 Score=973.01 Aligned_cols=647 Identities=53% Similarity=0.819 Sum_probs=581.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEE
Q 003053 34 FQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGF 113 (852)
Q Consensus 34 ~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gF 113 (852)
+..++++..+|..+.+++. ++++++++|.+||||||||++.|+|+.|...|+.||+|.+|+|||||++.+..+.+.|||
T Consensus 145 ~~~s~r~~~~p~~~~~s~~-~gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgf 223 (877)
T KOG0151|consen 145 SAVSSRFDPLPSRFDPSGR-PGSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGF 223 (877)
T ss_pred cchhhccCCCccccCCCCC-CCcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccce
Confidence 3456788899999888874 899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCHHHHHHHHHHhCCceecCeEEEEeeccCCCCCCCCCCCCCCCCccccccCCCcccCCCCCCCCCCCCCCCCcccc
Q 003053 114 VAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPVTTVPSQNSELV 193 (852)
Q Consensus 114 V~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~~~p~~~~~~~pp~~~~~~~~~~~~~~~~gp~~pp~~~~~~~~s~~~ 193 (852)
|.|+++.+|++|+..|||..+.++.|+++|||++++|+.|.+.||++++...++.+....+.+-.+| +.++|+++++++
T Consensus 224 vafmnR~D~era~k~lqg~iv~~~e~K~gWgk~V~ip~~p~~ipp~~h~~~lp~p~s~Lpfnaqp~p-~~~~pn~N~e~~ 302 (877)
T KOG0151|consen 224 VAFMNRADAERALKELQGIIVMEYEMKLGWGKAVPIPNIPIYIPPPLHEATLPPPPSNLPFNAQPGP-PKSLPNQNAELV 302 (877)
T ss_pred eeehhhhhHHHHHHHhcceeeeeeeeeeccccccccCCccccCCChhhhccCCCCccCCcccCCCCc-cccCCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999888888888776666 678999999999
Q ss_pred cCCCCCcccccCCCCcchhhHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccccccCCCCCccceeeeeeecccCCccccc
Q 003053 194 LTPNVPDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRW 273 (852)
Q Consensus 194 ~~~~~~~v~v~~P~d~~~~~~Id~~a~~V~~~G~~FE~~~~~~~~~np~f~FL~d~~~~~h~YYrwkl~~~~~gd~~~~~ 273 (852)
.+++++.+.|.+|+|..+..+||+||.||++.|+.||++||+++.+||+|+|||+.+++.|+||+||||+|+|||+++.|
T Consensus 303 ~~edv~~i~Vvip~d~~L~~vidrM~~fV~~egp~fea~im~re~~nplF~flfen~s~~htyyrwklySilQgdT~~ew 382 (877)
T KOG0151|consen 303 NTEDVEDILVVIPTDRHLLMVIDRMAEFVVREGPMFEAMIMERERGNPLFSFLFENGSPAHTYYRWKLYSILQGDTPQEW 382 (877)
T ss_pred CcCCccceeEecCchHHHHHHHHHHHHHHhccCccHHHHHHHhhccChhHHHHHhcCchHHHHHHHHHHHHHcCCCHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccCCccccCCCCCCCCCCchhhhcCcccccCcCcCcCCCCCCCHHHHHHHHHHHHhcccCHHHHHHHHHHHHh
Q 003053 274 RTEPFIMITGSGRWIPPALPTSKSPEHEKESGTTYAAGRSRRAEPERTLTDSQRDEFEDMLRALTLERSQIKEAMGFALD 353 (852)
Q Consensus 274 ~~~pf~m~~~~~~w~PP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~l~~lL~~Lt~tr~sI~~~~~w~l~ 353 (852)
+++||.||.+|++|+|||++......+..+..++|+.+. ...++.|+..+|++|++||+.|||.|.+|+++|.|||+
T Consensus 383 r~e~frmfknggrwipppin~~~~~mp~ee~~~t~a~~e---~~~k~~Ltd~qRdklE~liR~LTpEk~sIg~aM~Fale 459 (877)
T KOG0151|consen 383 RTEPFRMFKNGGRWIPPPINNYRKGMPEEEERSTDAEGE---SEDKGALTDLQRDKLEDLIRGLTPEKSSIGDAMVFALE 459 (877)
T ss_pred hhhhhhhcccCceecCCCCCcccccCchhhhcccccccc---hhhhcccchHHHHHHHHHHHhcCcccchHHHHHHHHHh
Confidence 999999999999999999998765555555555666543 34568899999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCCCchhhHHHHHhhhHHHHHHHHHHHhhhccccchHH
Q 003053 354 NADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEA 433 (852)
Q Consensus 354 h~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~a~~ 433 (852)
|+++|.|||+||+++|+..+|++++||++|||||||||||.++|.|||.||..||..|+.||..|+.+|+++.|||+++.
T Consensus 460 nA~aa~EI~eci~eSlt~~~t~~~kKiarLyLvsDIL~N~sarv~nas~YR~~FEa~L~~Ifd~l~~~yr~I~gRIkaE~ 539 (877)
T KOG0151|consen 460 NADAAGEIVECITESLTNKETPLPKKIARLYLVSDILHNSSARVANASAYRKSFEATLEDIFDDLNDLYRSIGGRIKAEA 539 (877)
T ss_pred hhhhHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHhccCCCCCCcccccccCCCccccccCCCccc--cCccccchhHHHhhcchh
Q 003053 434 LKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGNSGVTPFHSICGDAPEIDKKNNSEDT--CDLSKTNQDTALAMGKGA 511 (852)
Q Consensus 434 ~k~kv~~vL~iWe~~~vf~~~~l~~L~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~~d~--~dg~~~~~~~~~~~~~~~ 511 (852)
|+++|++||++|++|.|||.+||.+|+++||+ .+++..+++| |++.++++++....++ .||++++ +..
T Consensus 540 fkqRV~kVirvWedW~ifpe~~l~~l~~~Flg-~~~~~~~~~s-e~~~~die~~~~a~~eedldgvple--~~~------ 609 (877)
T KOG0151|consen 540 FKQRVMKVIRVWEDWAIFPEDFLIGLQNTFLG-LNNIVTEKES-EADAPDIENAPLAGNEEDLDGVPLE--DED------ 609 (877)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHhc-CCCCcccccc-cccchhhccCcccCchhhccCCCch--hhh------
Confidence 99999999999999999999999999999999 4566788888 9999999999886544 4555543 221
Q ss_pred HHHHhhcCChHHHHHHHHHcCccccCChHHHHHHHHhhHHHhhhcccccchhh-hhcccCCCCCccccCccccccccccc
Q 003053 512 AIKELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDAEKQRGYELDDDL-KSAHSQSSSGRYSRGWKETNMEAESM 590 (852)
Q Consensus 512 ~~~~~~~~~~~~l~~~c~~~gl~~~~~~~~~~~rl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (852)
+-.+++..++++|+.+| ++++..-+++..+++++.+++.++.|..+|+.... +.+|+.+. +-|..++...++.
T Consensus 610 agip~~n~pi~eld~~~-l~~dd~ldgipm~~e~~ss~s~~~~~sk~e~vd~~~~~~q~vst-----skwe~~~~~~~~~ 683 (877)
T KOG0151|consen 610 AGIPLMNTPIDELDGRP-LNLDDDLDGIPMMVETKSSLSDPETPSKWEAVDESFKEGQAVST-----SKWEHVDDEFEPK 683 (877)
T ss_pred cCCccccCchhhhcccc-ccccccccCceeeeeeccccCCCcccccccccCcccccccccch-----hhhhhcccccccc
Confidence 22367888999999999 88898889999999999999999999999998887 77777752 2377777777755
Q ss_pred CCcCCCCccccccccCCCCCCCCCCCcCCCCchhhhhccccCCCCCCcccccccccCCChhHhhcccCCCccccCCCCCC
Q 003053 591 GLSGWNGYEEDEKLSQAVGSVPLGTMLTTPQPEIKAFTKKEKNDPVLPASKWALEDDESDDEQKRSSRGLGLSYSSSGSE 670 (852)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (852)
.+.|...++-- .|| || +||.+++++.. +|+ |+.
T Consensus 684 ----~~s~~~~e~ed----------------------------~~~----k~---~de~~~~~~~~-------~ss-~~~ 716 (877)
T KOG0151|consen 684 ----KNSYDEVEEED----------------------------NPV----KY---DDEDRDKLRDI-------ESS-GSD 716 (877)
T ss_pred ----cccccchhccc----------------------------ccc----cc---chhhhHHHhhh-------hhh-ccc
Confidence 67777776621 123 88 77778887765 344 778
Q ss_pred CCCCCCCCccccccccCCCcccCCCCCCcHHHHHHHHHhhhhhhhhhhhhhhhccCCcHHHHHHHHHHHhhhhhhcCCCC
Q 003053 671 NAGDGPSKADDVDFTIDASIPVQPDSGMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLAD 750 (852)
Q Consensus 671 ~~~~~~~~~~~vef~~~~sv~~~~~~~~~~~~~~k~~~~~~ai~k~~~~~~e~~~k~~ee~~kr~~~~~~~~~~~~~~~~ 750 (852)
+.| ..+.+........||.++....++...++++++...|.++.+++.++++.++.++++.++.-.+++++..++.+.
T Consensus 717 ~~d--~l~sg~~~lk~~~sv~~qpe~~~d~~l~q~~r~~~~a~~e~~e~~~e~~~k~s~~~~rk~e~~~~r~e~~~g~S~ 794 (877)
T KOG0151|consen 717 NQD--ELESGERDLKPGSSVREQPENERDRLLRQDVRVEAIALIEYREADEEQGMKRSEDKERKVEIERKRKERKRGHSG 794 (877)
T ss_pred ccc--ccCCCCccCCCCCccccChhhHHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhhhhhcchhHHHHHhhhcccC
Confidence 877 467888888888999999999999999999999999999999999999999999999999988888887777664
No 2
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=99.87 E-value=1.7e-22 Score=191.93 Aligned_cols=120 Identities=23% Similarity=0.430 Sum_probs=107.1
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCCCchhhHHHHHh
Q 003053 330 FEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEA 409 (852)
Q Consensus 330 l~~lL~~Lt~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~yr~~fe~ 409 (852)
|+.+|+.|++++++|+++|.||++|.++|.+||++|.+++... +.++||++|||+|||||||. .+.+..|...|.+
T Consensus 2 f~~~L~~L~~s~~~I~~lt~~~~~~~~~a~~Iv~~i~~~~~~~--~~~~kL~~LYlindIl~n~~--~~~~~~f~~~~~~ 77 (121)
T smart00582 2 FEQKLESLNNSQESIQTLTKWAIEHASHAKEIVELWEKYIKKA--PPPRKLPLLYLLDSIVQNSK--RKYGSEFGDELGP 77 (121)
T ss_pred hHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CccceehhHHhHHHHHHHHh--hccHHHHHHHHHH
Confidence 7899999999999999999999999999999999999998654 35799999999999999997 4557789999999
Q ss_pred hhHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhccCccccHHHHHHHHH
Q 003053 410 TLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRA 461 (852)
Q Consensus 410 ~Lp~if~~l~~~~~~~~~r~~a~~~k~kv~~vL~iWe~~~vf~~~~l~~L~~ 461 (852)
.++.+|.++.... .++++++|.+||++|++|.|||+++|.+|++
T Consensus 78 ~~~~~~~~~~~~~--------~~~~~~ki~kll~iW~~~~iF~~~~i~~L~~ 121 (121)
T smart00582 78 VFQDALRDVLGAA--------NDETKKKIRRLLNIWEERGIFPPSVLRPLRE 121 (121)
T ss_pred HHHHHHHHHHHhC--------CHHHHHHHHHHHHHHhcCCCCCHHHHHHhhC
Confidence 9999887655322 1689999999999999999999999999973
No 3
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=99.80 E-value=3.2e-18 Score=189.82 Aligned_cols=133 Identities=21% Similarity=0.392 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHhc--ccCHHHHHHHHHHHHhcccc---HHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCC
Q 003053 324 DSQRDEFEDMLRAL--TLERSQIKEAMGFALDNADA---AGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVK 398 (852)
Q Consensus 324 ~~~~~~l~~lL~~L--t~tr~sI~~~~~w~l~h~~~---a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~ 398 (852)
..+.++|..+|+.+ |||++.|..++.|+.+++++ ++-|+..|...++....-+..+||+||||||+||||. ++
T Consensus 100 ~l~~~~~~~~l~~~~~~c~kd~is~~k~w~f~~~~s~~~~e~~~~~l~n~~~~~~~~~~lrlh~~ylind~~~hcq--rk 177 (757)
T KOG4368|consen 100 QLDMNEFDNLLQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQ--RK 177 (757)
T ss_pred cCCHHHHHHHHHHHHHHHhHHHHHHhhhhhhhcCCCchHHHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHH--HH
Confidence 35678899999988 89999999999999999997 5677778888888888888899999999999999998 77
Q ss_pred CchhhHHHHHhhhHHHHHHHHHHHhhhccccch-HHHHHHHHHHHHHhccCccccHHHHHHHHHHhccCC
Q 003053 399 NASAYRTKFEATLPDIMESFNDLYRSITGRITA-EALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSG 467 (852)
Q Consensus 399 na~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~a-~~~k~kv~~vL~iWe~~~vf~~~~l~~L~~~f~~~~ 467 (852)
.+-....+++.++..| || .+.+.. |.-.+++.+||.+||.+.||.+.++.+|+++.++-.
T Consensus 178 ~~~~~~~~l~~~v~~~-------yc--~~~~~~~e~~~~~~~~ll~~we~~~yf~ds~~~ql~~~~~~~~ 238 (757)
T KOG4368|consen 178 QARELLAALQKVVVPI-------YC--TSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLG 238 (757)
T ss_pred HHHHHHHHHHHHhHHH-------HH--hhhhhhHhHHHHHHHHHHHHHhhcCchhHHHHHHhhhhhhhhh
Confidence 7776677777766554 33 222233 455668899999999999999999999999987654
No 4
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=2.6e-18 Score=176.39 Aligned_cols=131 Identities=22% Similarity=0.433 Sum_probs=112.3
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
.|||||.| +|+..|+|+||+++ .|+..|++.++.... .-+..++ .-.....+.+|++||||++.
T Consensus 104 KGYgFVSf~~k~dAEnAI~~MnGqWlG~R--~IRTNWATRKp~e~n-~~~ltfd------eV~NQssp~NtsVY~G~I~~ 174 (321)
T KOG0148|consen 104 KGYGFVSFPNKEDAENAIQQMNGQWLGRR--TIRTNWATRKPSEMN-GKPLTFD------EVYNQSSPDNTSVYVGNIAS 174 (321)
T ss_pred cceeEEeccchHHHHHHHHHhCCeeeccc--eeeccccccCccccC-CCCccHH------HHhccCCCCCceEEeCCcCc
Confidence 59999999 59999999999999 999999999863221 1121111 12334577899999999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccCCCCC
Q 003053 75 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALP 150 (852)
Q Consensus 75 ~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~~~p 150 (852)
.+||+.|++.|+.||.|..|+|. +.+||+||.|.+.+.|..||..|||.+|+|..++|.|+|.....
T Consensus 175 ~lte~~mr~~Fs~fG~I~EVRvF---------k~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 175 GLTEDLMRQTFSPFGPIQEVRVF---------KDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred cccHHHHHHhcccCCcceEEEEe---------cccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 99999999999999999999999 56799999999999999999999999999999999999976643
No 5
>KOG2669 consensus Regulator of nuclear mRNA [RNA processing and modification]
Probab=99.74 E-value=5.7e-18 Score=181.60 Aligned_cols=128 Identities=17% Similarity=0.275 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHhcccCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCCCchhh
Q 003053 324 DSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAY 403 (852)
Q Consensus 324 ~~~~~~l~~lL~~Lt~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~y 403 (852)
....+.|...|..|+.|+++|+.+..|||.|..+|..||++|.+.|.... ..+||.+|||+|||+||| ++.+..|
T Consensus 3 ~fsee~l~~kL~~L~~TQeSIqtlS~Wli~hkk~a~~IV~~Wl~~~~~~~--~~~Kl~llYLaNDVvQns---krk~~ef 77 (325)
T KOG2669|consen 3 AFSEEALEKKLAELSNTQESIQTLSLWLIHHKKHARLIVDVWLKELKKSS--VNHKLTLLYLANDVVQNS---KRKGPEF 77 (325)
T ss_pred cccHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccC--CCceeeehhhhHHHHHHh---hhcCchh
Confidence 34457899999999999999999999999999999999999999996654 688999999999999999 5677789
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhccCccccHHHHHHHHHHhc
Q 003053 404 RTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 464 (852)
Q Consensus 404 r~~fe~~Lp~if~~l~~~~~~~~~r~~a~~~k~kv~~vL~iWe~~~vf~~~~l~~L~~~f~ 464 (852)
...|.++++..|.|+..-. ..+.+.+|.+||+||++++||+++++..|+..|.
T Consensus 78 ~~ef~~v~~~a~~~i~~~~--------~~~~k~~l~Rl~nIw~eR~Vf~~~~~~~l~~~l~ 130 (325)
T KOG2669|consen 78 VDEFWPVVLKAFAHIVEET--------DVKCKKKLGRLINIWEERNVFSPESLVDLEESLG 130 (325)
T ss_pred HHHHHHHHHHHHHHHHHhc--------chhhhHHHHHHHHHHHHhccCCHHHHHHHHHHhc
Confidence 9999999999887665332 2355899999999999999999999999999987
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.70 E-value=1.7e-16 Score=177.30 Aligned_cols=81 Identities=27% Similarity=0.459 Sum_probs=76.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEee
Q 003053 64 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 143 (852)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ 143 (852)
+.+|||+|||+.+++++|.++|++||.|.+|+|++ |..+|.++|||||+|.+.++|.+||..|||..|+|+.|+|.|
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~---d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIR---DLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSF 345 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeE---cCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34799999999999999999999999999999994 778999999999999999999999999999999999999999
Q ss_pred ccCC
Q 003053 144 GKSV 147 (852)
Q Consensus 144 ak~~ 147 (852)
...+
T Consensus 346 ~~~~ 349 (352)
T TIGR01661 346 KTNK 349 (352)
T ss_pred ccCC
Confidence 8765
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.68 E-value=4.7e-16 Score=172.88 Aligned_cols=120 Identities=23% Similarity=0.307 Sum_probs=104.4
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
||||||.| +|+.+|+|..+.++ +|++.++.+.. .....++|||+|||.
T Consensus 149 rGyaFVeF~~~e~A~~Ai~~LnG~~l~gr--~i~V~~a~p~~-----------------------~~~~~~~lfV~nLp~ 203 (346)
T TIGR01659 149 FGYAFVDFGSEADSQRAIKNLNGITVRNK--RLKVSYARPGG-----------------------ESIKDTNLYVTNLPR 203 (346)
T ss_pred CcEEEEEEccHHHHHHHHHHcCCCccCCc--eeeeecccccc-----------------------cccccceeEEeCCCC
Confidence 69999999 39999999999988 88888764311 012346899999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecC--eEEEEeeccCCCC
Q 003053 75 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE--YELKIGWGKSVAL 149 (852)
Q Consensus 75 ~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G--~~l~V~~ak~~~~ 149 (852)
.+|+++|+++|++||.|..|+|+. +..++++++||||+|.+.++|++||+.|||..+.| ++|+|.|++....
T Consensus 204 ~vtee~L~~~F~~fG~V~~v~i~~---d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 204 TITDDQLDTIFGKYGQIVQKNILR---DKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred cccHHHHHHHHHhcCCEEEEEEee---cCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 999999999999999999999984 77789999999999999999999999999999876 7899999987643
No 8
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.67 E-value=4.3e-16 Score=182.05 Aligned_cols=130 Identities=15% Similarity=0.222 Sum_probs=106.1
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
||||||.| +|+.+|+|..+.++ +|++......+... .. ...........++|||+||++
T Consensus 149 kGfAFVeF~s~e~A~~Ai~~lnG~~i~GR--~IkV~rp~~~p~a~--------~~----~~~~~~~~~~~~rLfVgnLp~ 214 (612)
T TIGR01645 149 KGFAFVEYEVPEAAQLALEQMNGQMLGGR--NIKVGRPSNMPQAQ--------PI----IDMVQEEAKKFNRIYVASVHP 214 (612)
T ss_pred CCeEEEEeCcHHHHHHHHHhcCCeEEecc--eeeecccccccccc--------cc----cccccccccccceEEeecCCC
Confidence 89999999 49999999999999 88887433221110 00 001111123457999999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccCCC
Q 003053 75 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 148 (852)
Q Consensus 75 ~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~~ 148 (852)
++++++|+++|+.||.|.+|+|++ +..+|+++|||||+|.+.++|..|+..|||..|+|+.|+|+|+.+.+
T Consensus 215 ~vteedLk~lFs~FG~I~svrl~~---D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 215 DLSETDIKSVFEAFGEIVKCQLAR---APTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred CCCHHHHHHHHhhcCCeeEEEEEe---cCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 999999999999999999999994 77788999999999999999999999999999999999999987643
No 9
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.60 E-value=1.3e-14 Score=142.21 Aligned_cols=84 Identities=27% Similarity=0.468 Sum_probs=78.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
..+++|||+|||+.+++++|+++|++||.|.+|+|+ .|..+++++|||||+|.+.++|+.|++.|||..|+|+.|+|
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~---~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V 108 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVI---VDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEE---ecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 356799999999999999999999999999999998 47789999999999999999999999999999999999999
Q ss_pred eeccCCC
Q 003053 142 GWGKSVA 148 (852)
Q Consensus 142 ~~ak~~~ 148 (852)
.|++...
T Consensus 109 ~~a~~~~ 115 (144)
T PLN03134 109 NPANDRP 115 (144)
T ss_pred EeCCcCC
Confidence 9997654
No 10
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=99.58 E-value=6.4e-15 Score=138.64 Aligned_cols=108 Identities=24% Similarity=0.491 Sum_probs=89.2
Q ss_pred HHHHHHhc---ccCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCCCchhhHHH
Q 003053 330 FEDMLRAL---TLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTK 406 (852)
Q Consensus 330 l~~lL~~L---t~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~yr~~ 406 (852)
+...|..| +.++.+|+.++.||++|..+|.+||++|.+++... +..+||+.|||+|||++||. .+ |...
T Consensus 4 ~~~~l~~L~~~~~S~~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~--~~~~KL~~LYL~dsIvkn~~--~~----~~~~ 75 (114)
T cd03562 4 YNALLEKLTFNKNSQPSIQTLTKLAIENRKHAKEIVEIIEKHIKKC--PPEQKLPLLYLLDSIVKNVG--RK----YKEF 75 (114)
T ss_pred HHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CcccchHHHHHHHHHHHHcc--cc----hHHH
Confidence 45555555 45999999999999999999999999999999544 46899999999999999996 33 6667
Q ss_pred HHhhhHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhccCccccH
Q 003053 407 FEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSD 453 (852)
Q Consensus 407 fe~~Lp~if~~l~~~~~~~~~r~~a~~~k~kv~~vL~iWe~~~vf~~ 453 (852)
|...++.+|. .+|.. ..++.+++|.+||++|+++.+|+.
T Consensus 76 ~~~~~~~~f~---~~~~~-----~~~~~r~kl~rl~~iW~~~~~f~~ 114 (114)
T cd03562 76 FSEFLVPLFL---DAYEK-----VDEKTRKKLERLLNIWEERFVFGS 114 (114)
T ss_pred HHHHHHHHHH---HHHHh-----CCHHHHHHHHHHHHHccCCCCCCC
Confidence 7777777773 34442 357999999999999999999973
No 11
>PF01805 Surp: Surp module; InterPro: IPR000061 SWAP is derived from the Suppressor-of-White-APricot splicing regulator from Drosophila melanogaster. The domain is found in regulators responsible for pervasive, nonsex-specific alternative pre-mRNA splicing characteristics and has been found in splicing regulatory proteins []. These ancient, conserved SWAP proteins share a colinearly arrayed series of novel sequence motifs [].; GO: 0003723 RNA binding, 0006396 RNA processing; PDB: 2E5Z_A 2DT7_B 2DT6_A 1UG0_A 1X4P_A 2E60_A 1X4O_A 4DGW_B.
Probab=99.55 E-value=1e-15 Score=125.16 Aligned_cols=54 Identities=46% Similarity=0.838 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccccccCCCCCccceeeeeeec
Q 003053 211 LRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSF 264 (852)
Q Consensus 211 ~~~~Id~~a~~V~~~G~~FE~~~~~~~~~np~f~FL~d~~~~~h~YYrwkl~~~ 264 (852)
++.+|++||.||+++|++||++|++++.+||+|+||++.+|++|.||+|+|+++
T Consensus 1 ~~~~I~~tA~~Va~~G~~fE~~l~~~~~~np~F~FL~~~~~~~~~yY~~~l~~y 54 (55)
T PF01805_consen 1 LREIIDKTAEFVAKNGPEFEEKLRERERNNPQFNFLFPSDSPYHAYYRWKLAEY 54 (55)
T ss_dssp HHHHHHHHHHHHHHCSHHHHHHHHHHTTTSGGGGGGSTTSSTHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHhcCCCCCCcCcCCCCCCCchHHHHHHHHh
Confidence 367999999999999999999999999999999999977799999999999865
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.54 E-value=5.7e-14 Score=164.84 Aligned_cols=141 Identities=14% Similarity=0.177 Sum_probs=103.5
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCCCC-CCCCCCCCCCCCCC-----CCCCCCCCCCcceEE
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPSSR-FDELPDDFDPSGKL-----PGSFDDGDPQTTNLY 68 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~~r-~~~~p~~~~~~~~~-----~~~~~~~~~~~~tLf 68 (852)
+|||||.|. |+ +|+|+.+.+. +++|.......... ....+....+.... +..........++||
T Consensus 223 kg~afVeF~~~e~A~~Al-~l~g~~~~g~--~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 299 (509)
T TIGR01642 223 KNFAFLEFRTVEEATFAM-ALDSIIYSNV--FLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIY 299 (509)
T ss_pred CCEEEEEeCCHHHHhhhh-cCCCeEeeCc--eeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEE
Confidence 689999994 88 5999999988 88775432211000 00000000000000 000111122457899
Q ss_pred EcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccCCC
Q 003053 69 VGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 148 (852)
Q Consensus 69 VgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~~ 148 (852)
|+|||..+++++|.++|+.||.|..+.|+ .+..+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+....
T Consensus 300 v~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 300 IGNLPLYLGEDQIKELLESFGDLKAFNLI---KDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEEEE---ecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 99999999999999999999999999998 477789999999999999999999999999999999999999987543
No 13
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.53 E-value=5.3e-14 Score=162.95 Aligned_cols=129 Identities=21% Similarity=0.356 Sum_probs=103.2
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
||||||.|. |+ +|+|..+.+. +|.+........... .. . .......+..++|||+|||.
T Consensus 131 kg~afVeF~~~e~A~~Al-~l~g~~~~g~--~i~v~~~~~~~~~~~-~~------~----~~~~~~~p~~~~l~v~nl~~ 196 (457)
T TIGR01622 131 KGVAYVEFYDVESVIKAL-ALTGQMLLGR--PIIVQSSQAEKNRAA-KA------A----THQPGDIPNFLKLYVGNLHF 196 (457)
T ss_pred ceEEEEEECCHHHHHHHH-HhCCCEECCe--eeEEeecchhhhhhh-hc------c----cccCCCCCCCCEEEEcCCCC
Confidence 799999994 66 5899999998 888876433211100 00 0 00011123478999999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccCC
Q 003053 75 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSV 147 (852)
Q Consensus 75 ~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~ 147 (852)
.+|+++|.++|++||.|..|.|+. +..+|+++|||||+|.+.++|..|+..|||..|.|+.|+|.|+...
T Consensus 197 ~~te~~l~~~f~~~G~i~~v~~~~---d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 197 NITEQELRQIFEPFGDIEDVQLHR---DPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEE---cCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCC
Confidence 999999999999999999999984 7778899999999999999999999999999999999999998843
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.49 E-value=7e-14 Score=166.23 Aligned_cols=135 Identities=26% Similarity=0.348 Sum_probs=104.0
Q ss_pred cceEehhh-------hHHhhhcceecc----CCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEc
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVS----NIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVG 70 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls----~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVg 70 (852)
||||||.| +|++.|+|..+. +. .+.+..+.... .+...+...+.... ........+++|||+
T Consensus 219 ~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~--~l~v~~a~~k~-er~~~~~~~~~~~~----~~~~~~~~~~~l~V~ 291 (562)
T TIGR01628 219 RGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGK--KLYVGRAQKRA-EREAELRRKFEELQ----QERKMKAQGVNLYVK 291 (562)
T ss_pred ccEEEEEECCHHHHHHHHHHhCCcEecccccce--eeEeecccChh-hhHHHHHhhHHhhh----hhhhcccCCCEEEEe
Confidence 78999999 499999999998 65 55555543321 11111111111100 001123457899999
Q ss_pred CCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccCC
Q 003053 71 NLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSV 147 (852)
Q Consensus 71 nLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~ 147 (852)
||+..+|+++|+++|++||.|.+|+|+. + .+|.++|||||+|.+.++|.+|+..|||..++|++|.|.||...
T Consensus 292 nl~~~~~~~~L~~~F~~~G~i~~~~i~~---d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 292 NLDDTVTDEKLRELFSECGEITSAKVML---D-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred CCCCccCHHHHHHHHHhcCCeEEEEEEE---C-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 9999999999999999999999999994 4 67899999999999999999999999999999999999999864
No 15
>smart00648 SWAP Suppressor-of-White-APricot splicing regulator. domain present in regulators which are responsible for pre-mRNA splicing processes
Probab=99.48 E-value=1.3e-14 Score=118.27 Aligned_cols=52 Identities=38% Similarity=0.655 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccccccCCCCCccceeeeeeecc
Q 003053 213 HVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFA 265 (852)
Q Consensus 213 ~~Id~~a~~V~~~G~~FE~~~~~~~~~np~f~FL~d~~~~~h~YYrwkl~~~~ 265 (852)
.+|++||.||+++|.+||++||+++.+||+|+||++ ++++|.||+|+|+++.
T Consensus 2 ~iI~~tA~~Va~~G~~fe~~l~~~~~~n~~F~FL~~-~~~~h~yy~~~l~~~~ 53 (54)
T smart00648 2 DIIDKTAQFVARNGPEFEAKLMERERNNPQFDFLKP-NDPYHAYYRKKLAEYR 53 (54)
T ss_pred cHHHHHHHHHHHhhHHHHHHHHHhcCCCCCCccCCC-CCCCcHHHHHHHHHHh
Confidence 589999999999999999999999999999999986 9999999999998754
No 16
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.47 E-value=2.8e-13 Score=151.36 Aligned_cols=119 Identities=17% Similarity=0.303 Sum_probs=102.7
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
||||||.| .|+++|+|..+.++ +|++.++.+... ....++|||+|||.
T Consensus 45 ~g~afV~f~~~~~A~~Ai~~l~g~~l~g~--~i~v~~a~~~~~-----------------------~~~~~~l~v~~l~~ 99 (352)
T TIGR01661 45 LGYGFVNYVRPEDAEKAVNSLNGLRLQNK--TIKVSYARPSSD-----------------------SIKGANLYVSGLPK 99 (352)
T ss_pred ceEEEEEECcHHHHHHHHhhcccEEECCe--eEEEEeeccccc-----------------------ccccceEEECCccc
Confidence 79999999 49999999999999 888887644210 12356899999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecC--eEEEEeeccCCC
Q 003053 75 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE--YELKIGWGKSVA 148 (852)
Q Consensus 75 ~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G--~~l~V~~ak~~~ 148 (852)
.+++++|+.+|++||.|..++++. +..++.++|||||+|.+.++|+.|+..|||..+.| .+|.|.|+....
T Consensus 100 ~~~~~~l~~~f~~~G~i~~~~~~~---~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 100 TMTQHELESIFSPFGQIITSRILS---DNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred cCCHHHHHHHHhccCCEEEEEEEe---cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 999999999999999999999984 66678899999999999999999999999999987 678999887543
No 17
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.42 E-value=2.2e-13 Score=133.42 Aligned_cols=121 Identities=23% Similarity=0.400 Sum_probs=105.5
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
+||||+.|+ |+.-|+++.|.++ ||++.-++.. . . .-..+.+||||||.+
T Consensus 51 qGygF~Ef~~eedadYAikiln~VkLYgr--pIrv~kas~~------------~-~---------nl~vganlfvgNLd~ 106 (203)
T KOG0131|consen 51 QGYGFAEFRTEEDADYAIKILNMVKLYGR--PIRVNKASAH------------Q-K---------NLDVGANLFVGNLDP 106 (203)
T ss_pred cceeEEEEechhhhHHHHHHHHHHHhcCc--eeEEEecccc------------c-c---------cccccccccccccCc
Confidence 699999996 9999999999999 9998876631 0 0 011347999999999
Q ss_pred CCCHHHHHHHhccCCCeeEE-EEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccCCCC
Q 003053 75 QVDENFLLRTFGRFGPIASV-KIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVAL 149 (852)
Q Consensus 75 ~vte~~L~~~F~~fG~I~~v-ki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~~~ 149 (852)
.++|..|..+|+.||.+... +||+ +..||.++|||||.|.+.+.+.+|+..|||+.+..++|.|.+++....
T Consensus 107 ~vDe~~L~dtFsafG~l~~~P~i~r---d~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 107 EVDEKLLYDTFSAFGVLISPPKIMR---DPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred chhHHHHHHHHHhccccccCCcccc---cccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCC
Confidence 99999999999999998765 7885 788999999999999999999999999999999999999999987654
No 18
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.40 E-value=1e-12 Score=111.18 Aligned_cols=70 Identities=34% Similarity=0.620 Sum_probs=66.0
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 67 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 67 LfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
|||+|||.++|+++|+++|++||.|..++++. + .++..++||||+|.+.++|+.|++.|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~---~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMR---N-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEE---E-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccc---c-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999984 3 6788899999999999999999999999999999986
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.40 E-value=1.3e-12 Score=152.88 Aligned_cols=116 Identities=25% Similarity=0.351 Sum_probs=93.5
Q ss_pred cceEehhhh-------HHhhhcc--eeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCC
Q 003053 2 RSFSFFLFS-------FFNAWHV--IYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNL 72 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g--~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnL 72 (852)
||||||.|. |+..|+. +.+.+. .|.+.++.+..... .+.....++|||+||
T Consensus 182 RGFAFVeF~s~edAa~AirkL~~gki~l~Gr--~I~VdwA~p~~~~d------------------~~~~~~~k~LfVgNL 241 (578)
T TIGR01648 182 RGFAFVEYESHRAAAMARRKLMPGRIQLWGH--VIAVDWAEPEEEVD------------------EDVMAKVKILYVRNL 241 (578)
T ss_pred CceEEEEcCCHHHHHHHHHHhhccceEecCc--eEEEEeeccccccc------------------ccccccccEEEEeCC
Confidence 899999994 6666653 345566 78887765532110 001123468999999
Q ss_pred CCCCCHHHHHHHhccC--CCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccCCC
Q 003053 73 SPQVDENFLLRTFGRF--GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 148 (852)
Q Consensus 73 p~~vte~~L~~~F~~f--G~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~~ 148 (852)
+..+++++|+++|++| |.|..|+++ ++||||+|.+.++|++|++.|||..|.|+.|+|.|+++..
T Consensus 242 ~~~~tee~L~~~F~~f~~G~I~rV~~~-----------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 242 MTTTTEEIIEKSFSEFKPGKVERVKKI-----------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred CCCCCHHHHHHHHHhcCCCceEEEEee-----------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 9999999999999999 999999876 2699999999999999999999999999999999998754
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1e-12 Score=146.18 Aligned_cols=142 Identities=16% Similarity=0.170 Sum_probs=106.5
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCcceEEEcC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDF---DPSGKLPGSFDDGDPQTTNLYVGN 71 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~---~~~~~~~~~~~~~~~~~~tLfVgn 71 (852)
||||||+| +|+.+..+..+.++ .+.+.++..............- .+...........+..-..|.|.|
T Consensus 47 RGfgfVtFam~ED~qrA~~e~~~~kf~Gr--~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRN 124 (678)
T KOG0127|consen 47 RGFGFVTFAMEEDVQRALAETEQSKFEGR--ILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRN 124 (678)
T ss_pred cCccceeeehHhHHHHHHHHhhcCcccce--ecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeec
Confidence 89999999 49999999888888 6666666654433311111110 000000001111233367899999
Q ss_pred CCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccCCCC
Q 003053 72 LSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVAL 149 (852)
Q Consensus 72 Lp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~~~ 149 (852)
||+.+...+|..+|+.||.|..|.|.+ ...|+-+|||||.|....+|..|++.|||..|+|++|-|+||-+...
T Consensus 125 LPf~~k~~dLk~vFs~~G~V~Ei~IP~----k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 125 LPFKCKKPDLKNVFSNFGKVVEIVIPR----KKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred CCcccCcHHHHHHHhhcceEEEEEccc----CCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 999999999999999999999999873 33456679999999999999999999999999999999999987654
No 21
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.39 E-value=1e-12 Score=146.24 Aligned_cols=84 Identities=27% Similarity=0.439 Sum_probs=78.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 60 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
.....++|||+|||+++|+++|+++|+.||.|++|+|+ .|..+++++|||||+|.+.++|++|+..|||..|.|++|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~---~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i 179 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIM---RDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRL 179 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---ecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCcee
Confidence 44567899999999999999999999999999999999 477899999999999999999999999999999999999
Q ss_pred EEeeccC
Q 003053 140 KIGWGKS 146 (852)
Q Consensus 140 ~V~~ak~ 146 (852)
+|.|+++
T Consensus 180 ~V~~a~p 186 (346)
T TIGR01659 180 KVSYARP 186 (346)
T ss_pred eeecccc
Confidence 9999864
No 22
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.38 E-value=1.3e-12 Score=155.32 Aligned_cols=118 Identities=25% Similarity=0.438 Sum_probs=100.5
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
+|||||.| +|+.+|++..+.++ +|++.|....+..+ ....++|||+||+.
T Consensus 42 ~G~afV~F~~~~~A~~Al~~ln~~~i~gk--~i~i~~s~~~~~~~---------------------~~~~~~vfV~nLp~ 98 (562)
T TIGR01628 42 LGYGYVNFQNPADAERALETMNFKRLGGK--PIRIMWSQRDPSLR---------------------RSGVGNIFVKNLDK 98 (562)
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCe--eEEeeccccccccc---------------------ccCCCceEEcCCCc
Confidence 58999999 49999999999988 99998854321111 11245899999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccC
Q 003053 75 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 146 (852)
Q Consensus 75 ~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~ 146 (852)
++++++|+++|+.||.|.+|+|+. + .+|+++|||||.|.+.++|.+|+..|||..+.|+.|.|.+...
T Consensus 99 ~~~~~~L~~~F~~~G~i~~~~i~~---~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 99 SVDNKALFDTFSKFGNILSCKVAT---D-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred cCCHHHHHHHHHhcCCcceeEeee---c-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 999999999999999999999983 3 4788999999999999999999999999999999999976543
No 23
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.38 E-value=6e-12 Score=146.91 Aligned_cols=81 Identities=20% Similarity=0.322 Sum_probs=73.7
Q ss_pred CCCcceEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 61 DPQTTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 61 ~~~~~tLfVgnLp~-~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
.+.+++|||+||++ .+|+++|..+|+.||.|.+|+|+. + .+|||||+|.+.++|..|+..|||..|.|+.|
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~---~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l 343 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMK---N-----KKETALIEMADPYQAQLALTHLNGVKLFGKPL 343 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEe---C-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceE
Confidence 34678999999998 699999999999999999999994 1 46999999999999999999999999999999
Q ss_pred EEeeccCCCC
Q 003053 140 KIGWGKSVAL 149 (852)
Q Consensus 140 ~V~~ak~~~~ 149 (852)
+|.+++...+
T Consensus 344 ~v~~s~~~~~ 353 (481)
T TIGR01649 344 RVCPSKQQNV 353 (481)
T ss_pred EEEEcccccc
Confidence 9999987654
No 24
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.38 E-value=3.3e-12 Score=149.09 Aligned_cols=139 Identities=19% Similarity=0.259 Sum_probs=101.7
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCC--CCCCCCCC------CCCCCC----CCCC--CCCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPS--SRFDELPD------DFDPSG----KLPG--SFDDG 60 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~--~r~~~~p~------~~~~~~----~~~~--~~~~~ 60 (852)
+|||||.|. |+..|||..+.+. +++|.++..... .+...++. .+.... ..+. .....
T Consensus 313 ~g~afV~f~~~~~A~~Ai~~lng~~l~g~--~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~ 390 (481)
T TIGR01649 313 KETALIEMADPYQAQLALTHLNGVKLFGK--PLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNI 390 (481)
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCc--eEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCccccccccc
Confidence 699999994 9999999999998 999988654311 11100000 010000 0000 01111
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCC--eeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGP--IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 138 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~--I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~ 138 (852)
.+.+.+|||+|||..+++++|+++|+.||. |+.|+++. ..++ .+++|||+|.+.++|..|+..|||..|.|+.
T Consensus 391 ~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~----~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~ 465 (481)
T TIGR01649 391 QPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFP----KDNE-RSKMGLLEWESVEDAVEALIALNHHQLNEPN 465 (481)
T ss_pred CCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEec----CCCC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCC
Confidence 245779999999999999999999999998 88898872 1222 5789999999999999999999999999885
Q ss_pred ------EEEeeccCC
Q 003053 139 ------LKIGWGKSV 147 (852)
Q Consensus 139 ------l~V~~ak~~ 147 (852)
|+|.|+++.
T Consensus 466 ~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 466 GSAPYHLKVSFSTSR 480 (481)
T ss_pred CCccceEEEEeccCC
Confidence 999999864
No 25
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=3.5e-12 Score=130.25 Aligned_cols=82 Identities=28% Similarity=0.461 Sum_probs=78.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
..++|-|.||+.+++|.+|+++|.+||.|..|.|. .|+.||.++|||||+|.++++|.+||..|||.-++.--|+|.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvyla---rdK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLA---RDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEE---EccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 56789999999999999999999999999999999 499999999999999999999999999999999999999999
Q ss_pred eccCC
Q 003053 143 WGKSV 147 (852)
Q Consensus 143 ~ak~~ 147 (852)
|++|.
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99975
No 26
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=1.3e-12 Score=133.75 Aligned_cols=117 Identities=19% Similarity=0.331 Sum_probs=104.7
Q ss_pred ceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCC
Q 003053 3 SFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQ 75 (852)
Q Consensus 3 ~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~~ 75 (852)
|||||.+ +|++.++|..+..+ .|++.++.++..+ ....+|||.+||..
T Consensus 84 GYGFVNYv~p~DAe~AintlNGLrLQ~K--TIKVSyARPSs~~-----------------------Ik~aNLYvSGlPkt 138 (360)
T KOG0145|consen 84 GYGFVNYVRPKDAEKAINTLNGLRLQNK--TIKVSYARPSSDS-----------------------IKDANLYVSGLPKT 138 (360)
T ss_pred ccceeeecChHHHHHHHhhhcceeeccc--eEEEEeccCChhh-----------------------hcccceEEecCCcc
Confidence 8999999 59999999999999 9999998774211 23569999999999
Q ss_pred CCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecC--eEEEEeeccCC
Q 003053 76 VDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE--YELKIGWGKSV 147 (852)
Q Consensus 76 vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G--~~l~V~~ak~~ 147 (852)
+|..+|+++|++||.|...+|+ .|..+|.++|.|||.|+.+.+|+.||..|||..-.| .+|.|.|+..+
T Consensus 139 MtqkelE~iFs~fGrIItSRiL---~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 139 MTQKELEQIFSPFGRIITSRIL---VDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred chHHHHHHHHHHhhhhhhhhhh---hhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 9999999999999999998988 588999999999999999999999999999999876 47999998764
No 27
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=6.9e-12 Score=139.66 Aligned_cols=80 Identities=21% Similarity=0.370 Sum_probs=72.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHh-----CC-ceecCe
Q 003053 64 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEM-----QG-VVVYEY 137 (852)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~l-----nG-~~l~G~ 137 (852)
..+|||.|||+++||++|...|++||.|.++.|+ .++.||+++|+|||.|.+..+|..||.+. .| ..|.|+
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV---~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV---KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEE---eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 3789999999999999999999999999999998 58999999999999999999999999876 34 678999
Q ss_pred EEEEeeccC
Q 003053 138 ELKIGWGKS 146 (852)
Q Consensus 138 ~l~V~~ak~ 146 (852)
.|+|..|-.
T Consensus 369 ~Lkv~~Av~ 377 (678)
T KOG0127|consen 369 LLKVTLAVT 377 (678)
T ss_pred EEeeeeccc
Confidence 999987643
No 28
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=4.3e-12 Score=129.31 Aligned_cols=83 Identities=23% Similarity=0.411 Sum_probs=75.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 60 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
.|...|+||||+|++.+..+.|+++|++||.|.++.|+ +|+.+|++||||||+|.+.++|.+|+... .-.|+||+-
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvi---td~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~a 83 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVI---TDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKA 83 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEE---eccCCccccceeeEEeecHHHHHHHhcCC-CCccccccc
Confidence 35678899999999999999999999999999999999 69999999999999999999999999864 467999998
Q ss_pred EEeeccC
Q 003053 140 KIGWGKS 146 (852)
Q Consensus 140 ~V~~ak~ 146 (852)
.|++|.-
T Consensus 84 NcnlA~l 90 (247)
T KOG0149|consen 84 NCNLASL 90 (247)
T ss_pred ccchhhh
Confidence 8887643
No 29
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.32 E-value=9.8e-12 Score=145.98 Aligned_cols=142 Identities=11% Similarity=0.135 Sum_probs=102.7
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCcceEEE
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPD-----DFDPSGKLPGSFDDGDPQTTNLYV 69 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~-----~~~~~~~~~~~~~~~~~~~~tLfV 69 (852)
+|||||.| .|+..|+|..+.+. .|.|.++............. ..................+.+|+|
T Consensus 337 ~g~afv~f~~~~~a~~A~~~l~g~~~~~~--~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l 414 (509)
T TIGR01642 337 KGYAFCEYKDPSVTDVAIAALNGKDTGDN--KLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQL 414 (509)
T ss_pred CeEEEEEECCHHHHHHHHHHcCCCEECCe--EEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEe
Confidence 79999999 49999999999998 88888876543221111000 000000000011122345678999
Q ss_pred cCCCCC--C--------CHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 70 GNLSPQ--V--------DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 70 gnLp~~--v--------te~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
.||... + ..++|+++|++||.|..|+|++|..+..++.+.||+||+|.+.++|++|+..|||..|+|+.|
T Consensus 415 ~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v 494 (509)
T TIGR01642 415 TNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVV 494 (509)
T ss_pred ccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 999642 1 125799999999999999998765555667788999999999999999999999999999999
Q ss_pred EEeecc
Q 003053 140 KIGWGK 145 (852)
Q Consensus 140 ~V~~ak 145 (852)
.|.|..
T Consensus 495 ~~~~~~ 500 (509)
T TIGR01642 495 VAAFYG 500 (509)
T ss_pred EEEEeC
Confidence 999853
No 30
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=8.4e-12 Score=131.96 Aligned_cols=90 Identities=26% Similarity=0.406 Sum_probs=78.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEee
Q 003053 64 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 143 (852)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ 143 (852)
-..|||+|+|+..-+.||+.+|++||.|.+|.|+. .++ .+||||||+|++.++|++|-.+|+|.++.||+|.|+-
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIf----NER-GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIF----NER-GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEe----ccC-CCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 35799999999999999999999999999999994 233 4799999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCC
Q 003053 144 GKSVALPSQALPAPP 158 (852)
Q Consensus 144 ak~~~~p~~~~~~~p 158 (852)
|.+.....+..+.|+
T Consensus 171 ATarV~n~K~~v~p~ 185 (376)
T KOG0125|consen 171 ATARVHNKKKKVLPY 185 (376)
T ss_pred cchhhccCCcccCCC
Confidence 988766555544443
No 31
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=5e-12 Score=138.24 Aligned_cols=74 Identities=30% Similarity=0.404 Sum_probs=69.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeec
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 144 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~a 144 (852)
..|||.||+.+|||+.|+++|++||.|..|+.++ .||||.|.++++|.+||+.|||+.|+|..|.|.+|
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~r-----------DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKPR-----------DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeeccc-----------ceeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 4699999999999999999999999999998772 59999999999999999999999999999999999
Q ss_pred cCCCC
Q 003053 145 KSVAL 149 (852)
Q Consensus 145 k~~~~ 149 (852)
||+..
T Consensus 329 KP~~k 333 (506)
T KOG0117|consen 329 KPVDK 333 (506)
T ss_pred CChhh
Confidence 98764
No 32
>PF04818 CTD_bind: RNA polymerase II-binding domain.; InterPro: IPR006903 This entry represents a conserved region found in a number of uncharacterised eukaryotic proteins.; PDB: 2L0I_A 2KM4_A 3D9I_B 3D9N_B 3D9O_A 3D9P_B 3D9K_A 3D9M_A 3D9J_A 3D9L_A ....
Probab=99.29 E-value=1.1e-12 Score=110.70 Aligned_cols=64 Identities=31% Similarity=0.639 Sum_probs=54.9
Q ss_pred hhhhhhhhhhhhccCCCCCCCchhhHHHHHhhhHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhccCcccc
Q 003053 379 KVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFS 452 (852)
Q Consensus 379 KL~~LYLinDIL~ns~~~~~na~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~a~~~k~kv~~vL~iWe~~~vf~ 452 (852)
||++|||+|||||||. .++.+.|..+|+++||.+|.++ |.. .+++.+++|.+||++|+++.||+
T Consensus 1 KL~~lYl~ndI~q~sk--~k~~~~f~~~F~~~l~~~~~~~---~~~-----~~~~~~~kv~rll~iW~~r~if~ 64 (64)
T PF04818_consen 1 KLALLYLANDILQNSK--RKNPDEFAPAFSPVLPDAFAHA---YKN-----VDPEVRKKVQRLLNIWEERNIFS 64 (64)
T ss_dssp HHHHHHHHHHHHHHHH--HHTTHCHHHHHHCCHHHHHHHH---CCC-----S-HHHHHHHHHHHHHHHHCTSS-
T ss_pred CcceeehHHHHHHHhh--hcChHHHHHHHHHHHHHHHHHH---Hhc-----CCHHHHHHHHHHHHHhhCCCCCC
Confidence 7999999999999996 6688899999999999999764 321 26799999999999999999996
No 33
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=5.5e-12 Score=117.06 Aligned_cols=81 Identities=22% Similarity=0.404 Sum_probs=75.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
-..++|||||||++.++|+.|.++|+++|.|..|.+- .|+.+....||+||+|.+.++|+.|+..++|..|+.++|+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMG---Ldr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir 109 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMG---LDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIR 109 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEec---cccCCcCccceEEEEEecchhHHHHHHHhccCccccccee
Confidence 3568999999999999999999999999999998665 4777888899999999999999999999999999999999
Q ss_pred Eeec
Q 003053 141 IGWG 144 (852)
Q Consensus 141 V~~a 144 (852)
|+|-
T Consensus 110 ~D~D 113 (153)
T KOG0121|consen 110 IDWD 113 (153)
T ss_pred eecc
Confidence 9985
No 34
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=1.1e-11 Score=131.85 Aligned_cols=127 Identities=14% Similarity=0.219 Sum_probs=101.8
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
.||+||.| .|++.|||..++++ -|++...++ .++...+-....+.......|||..+.+
T Consensus 155 KgFAFVEYEvPEaAqLAlEqMNg~mlGGR--NiKVgrPsN------------mpQAQpiID~vqeeAk~fnRiYVaSvHp 220 (544)
T KOG0124|consen 155 KGFAFVEYEVPEAAQLALEQMNGQMLGGR--NIKVGRPSN------------MPQAQPIIDMVQEEAKKFNRIYVASVHP 220 (544)
T ss_pred cceEEEEEeCcHHHHHHHHHhccccccCc--cccccCCCC------------CcccchHHHHHHHHHHhhheEEeeecCC
Confidence 59999999 49999999999999 666653222 2222111112222334567899999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeecc
Q 003053 75 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGK 145 (852)
Q Consensus 75 ~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak 145 (852)
+.+|++|+.+|..||+|.+|++.+ +..++..+||||++|.+..+...|+..||-+.|+|..|+|+-+-
T Consensus 221 DLSe~DiKSVFEAFG~I~~C~LAr---~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 221 DLSETDIKSVFEAFGEIVKCQLAR---APTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred CccHHHHHHHHHhhcceeeEEeec---cCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 999999999999999999999985 55566789999999999999999999999999999999995443
No 35
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.26 E-value=2.4e-11 Score=127.87 Aligned_cols=79 Identities=19% Similarity=0.256 Sum_probs=70.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEee
Q 003053 64 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 143 (852)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ 143 (852)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+. +. ..+|||||+|.+.++|+.|+. |||..|.|+.|+|.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~---d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~ 76 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQS---EN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITP 76 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee---cC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEe
Confidence 57999999999999999999999999999999984 32 256899999999999999995 999999999999999
Q ss_pred ccCCCC
Q 003053 144 GKSVAL 149 (852)
Q Consensus 144 ak~~~~ 149 (852)
+.....
T Consensus 77 a~~~~~ 82 (260)
T PLN03120 77 AEDYQL 82 (260)
T ss_pred ccCCCC
Confidence 766543
No 36
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=4.9e-12 Score=126.84 Aligned_cols=85 Identities=31% Similarity=0.516 Sum_probs=80.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
...+||||+|..+|+|.-|...|-+||.|+.|+|. .|-++++.+|||||+|...++|..||..||+.+|.|+.|+|+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiP---lDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIP---LDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccc---cchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 45789999999999999999999999999999998 588999999999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 003053 143 WGKSVALP 150 (852)
Q Consensus 143 ~ak~~~~p 150 (852)
+|+|..+.
T Consensus 86 ~AkP~kik 93 (298)
T KOG0111|consen 86 LAKPEKIK 93 (298)
T ss_pred ecCCcccc
Confidence 99998765
No 37
>PLN03213 repressor of silencing 3; Provisional
Probab=99.24 E-value=1.9e-11 Score=134.26 Aligned_cols=79 Identities=20% Similarity=0.289 Sum_probs=72.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCH--HHHHHHHHHhCCceecCeEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNR--ADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~--~~A~~Ai~~lnG~~l~G~~l 139 (852)
..+.+||||||++.|++++|..+|+.||.|.+|.|++ .+| ||||||+|.+. .++.+||..|||..+.|+.|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR-----ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~L 80 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR-----TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRL 80 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec-----ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCcee
Confidence 3568999999999999999999999999999999983 456 89999999987 78999999999999999999
Q ss_pred EEeeccCC
Q 003053 140 KIGWGKSV 147 (852)
Q Consensus 140 ~V~~ak~~ 147 (852)
+|.-|++.
T Consensus 81 KVNKAKP~ 88 (759)
T PLN03213 81 RLEKAKEH 88 (759)
T ss_pred EEeeccHH
Confidence 99988754
No 38
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.24 E-value=1.9e-11 Score=143.40 Aligned_cols=79 Identities=27% Similarity=0.545 Sum_probs=74.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
..++||||||++.+++++|+++|++||.|.+|+|++ |..+|+++|||||+|.+.++|++|+..|||..|+|+.|+|.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~---D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSW---DPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEee---cCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeec
Confidence 467999999999999999999999999999999995 77899999999999999999999999999999999999998
Q ss_pred ec
Q 003053 143 WG 144 (852)
Q Consensus 143 ~a 144 (852)
+.
T Consensus 183 rp 184 (612)
T TIGR01645 183 RP 184 (612)
T ss_pred cc
Confidence 53
No 39
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.24 E-value=8.9e-12 Score=124.21 Aligned_cols=82 Identities=29% Similarity=0.442 Sum_probs=77.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEee
Q 003053 64 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 143 (852)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ 143 (852)
.++|-|-||...++.++|+.+|++||.|.+|.|.| |..|+.++|||||-|....+|+.|+++|+|.+|+|+.|+|.+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPr---dr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPR---DRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceeccc---ccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 56899999999999999999999999999999986 888999999999999999999999999999999999999988
Q ss_pred ccCCC
Q 003053 144 GKSVA 148 (852)
Q Consensus 144 ak~~~ 148 (852)
|+-..
T Consensus 90 arygr 94 (256)
T KOG4207|consen 90 ARYGR 94 (256)
T ss_pred hhcCC
Confidence 87544
No 40
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=1e-11 Score=135.10 Aligned_cols=122 Identities=24% Similarity=0.318 Sum_probs=100.7
Q ss_pred cceEehhhh-------HHhhhcc-eeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCC
Q 003053 2 RSFSFFLFS-------FFNAWHV-IYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLS 73 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g-~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp 73 (852)
+|.|||.|. |++.+|. +.+.+-.+||.+.++-.... . -+...+||||-|+
T Consensus 76 ~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~e-------------r---------~~~e~KLFvg~ls 133 (510)
T KOG0144|consen 76 KGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERE-------------R---------IVEERKLFVGMLS 133 (510)
T ss_pred cceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhh-------------c---------cccchhhhhhhcc
Confidence 699999994 8888885 56777777888877654210 0 0235689999999
Q ss_pred CCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCce-ecC--eEEEEeeccCCCC
Q 003053 74 PQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV-VYE--YELKIGWGKSVAL 149 (852)
Q Consensus 74 ~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~-l~G--~~l~V~~ak~~~~ 149 (852)
..+||.+++++|++||.|.+|.|++ ...|.+||||||+|.+++-|..||++|||.. +.| .+|.|.||.+...
T Consensus 134 K~~te~evr~iFs~fG~Ied~~ilr----d~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 134 KQCTENEVREIFSRFGHIEDCYILR----DPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred ccccHHHHHHHHHhhCccchhhhee----cccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 9999999999999999999999995 3457899999999999999999999999976 555 5899999987653
No 41
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=2.1e-11 Score=119.00 Aligned_cols=78 Identities=24% Similarity=0.442 Sum_probs=71.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
..|.||||||+..+++.+|+.+|..||+|.+|-|.. ...|||||+|++..+|+.|+..|+|+.|.|..|+|.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--------nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE 80 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--------NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVE 80 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--------cCCCceEEeccCcccHHHHHhhcCCccccCceEEEE
Confidence 468999999999999999999999999999987763 567999999999999999999999999999999999
Q ss_pred eccCCC
Q 003053 143 WGKSVA 148 (852)
Q Consensus 143 ~ak~~~ 148 (852)
++.-.+
T Consensus 81 ~S~G~~ 86 (195)
T KOG0107|consen 81 LSTGRP 86 (195)
T ss_pred eecCCc
Confidence 886543
No 42
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=1.6e-11 Score=141.03 Aligned_cols=127 Identities=21% Similarity=0.341 Sum_probs=105.9
Q ss_pred ceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCC
Q 003053 3 SFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQ 75 (852)
Q Consensus 3 ~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~~ 75 (852)
|||||.|. |+..|+|..|.+. .+.|.+....+..... .........++|+|.|||+.
T Consensus 561 GfgFVEF~~~e~A~~a~k~lqgtvldGH--~l~lk~S~~k~~~~~g--------------K~~~~kk~~tKIlVRNipFe 624 (725)
T KOG0110|consen 561 GFGFVEFAKPESAQAALKALQGTVLDGH--KLELKISENKPASTVG--------------KKKSKKKKGTKILVRNIPFE 624 (725)
T ss_pred ceeEEEecCHHHHHHHHHHhcCceecCc--eEEEEeccCccccccc--------------cccccccccceeeeeccchH
Confidence 99999994 9999999999999 8888887643322211 11112334789999999999
Q ss_pred CCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccCCC
Q 003053 76 VDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 148 (852)
Q Consensus 76 vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~~ 148 (852)
.+-.+++.+|+.||.|.+|+|.- -...+.++|||||+|.+..+|.+|+++|.++.|+|+.|.+.||+.-.
T Consensus 625 At~rEVr~LF~aFGqlksvRlPK---K~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 625 ATKREVRKLFTAFGQLKSVRLPK---KIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred HHHHHHHHHHhcccceeeeccch---hhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 99999999999999999999972 23556679999999999999999999999999999999999998754
No 43
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2.8e-11 Score=125.13 Aligned_cols=81 Identities=26% Similarity=0.582 Sum_probs=77.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeec
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 144 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~a 144 (852)
-.+|||-|.+.|+-+.|++.|.+||.|.+++|++ |..|+++||||||.|-+.++|++||..|||.=|++|.|+.+||
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvir---D~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIR---DMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEee---cccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 4699999999999999999999999999999995 8899999999999999999999999999999999999999999
Q ss_pred cCCC
Q 003053 145 KSVA 148 (852)
Q Consensus 145 k~~~ 148 (852)
..++
T Consensus 140 TRKp 143 (321)
T KOG0148|consen 140 TRKP 143 (321)
T ss_pred ccCc
Confidence 7664
No 44
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.19 E-value=8.8e-11 Score=100.09 Aligned_cols=70 Identities=29% Similarity=0.569 Sum_probs=63.0
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 67 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 67 LfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
|||+|||+.+++++|..+|+.||.|..|++.. +.. +..+++|||+|.+.++|.+|+..++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~---~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIK---NKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEE---STT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEe---eec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999984 444 78899999999999999999999999999999875
No 45
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=1.1e-10 Score=119.70 Aligned_cols=86 Identities=23% Similarity=0.434 Sum_probs=81.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 60 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
.+...|+|.|.-||.++|+++|+.+|+..|.|.+||+++ |+-+|.+-|||||.|.+.++|++|+..|||..|..+.|
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvR---DKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTI 113 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVR---DKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTI 113 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeee---ccccccccccceeeecChHHHHHHHhhhcceeeccceE
Confidence 355678999999999999999999999999999999996 88999999999999999999999999999999999999
Q ss_pred EEeeccCCC
Q 003053 140 KIGWGKSVA 148 (852)
Q Consensus 140 ~V~~ak~~~ 148 (852)
+|+||+|..
T Consensus 114 KVSyARPSs 122 (360)
T KOG0145|consen 114 KVSYARPSS 122 (360)
T ss_pred EEEeccCCh
Confidence 999998753
No 46
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.18 E-value=8.6e-11 Score=137.75 Aligned_cols=78 Identities=19% Similarity=0.374 Sum_probs=71.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceec-CeEEEE
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-EYELKI 141 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~-G~~l~V 141 (852)
..|+|||+|||.+++|++|.++|++||.|.+|+|++ | .+|+++|||||+|.+.++|++||+.|||..|. |+.|.|
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~---D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V 132 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMM---D-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV 132 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEE---C-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc
Confidence 468999999999999999999999999999999994 5 78999999999999999999999999999985 788777
Q ss_pred eec
Q 003053 142 GWG 144 (852)
Q Consensus 142 ~~a 144 (852)
.++
T Consensus 133 ~~S 135 (578)
T TIGR01648 133 CIS 135 (578)
T ss_pred ccc
Confidence 654
No 47
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=7.4e-11 Score=132.33 Aligned_cols=110 Identities=20% Similarity=0.400 Sum_probs=98.2
Q ss_pred ceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCC
Q 003053 3 SFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPQ 75 (852)
Q Consensus 3 ~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~~ 75 (852)
|||+|.| +|+.+|+...+.++ +|++.|....++. |||.||++.
T Consensus 38 gy~yvnf~~~~da~~A~~~~n~~~~~~~--~~rim~s~rd~~~----------------------------~~i~nl~~~ 87 (369)
T KOG0123|consen 38 GYAYVNFQQPADAERALDTMNFDVLKGK--PIRIMWSQRDPSL----------------------------VFIKNLDES 87 (369)
T ss_pred ceEEEecCCHHHHHHHHHHcCCcccCCc--EEEeehhccCCce----------------------------eeecCCCcc
Confidence 8999999 59999999999999 9999997663221 999999999
Q ss_pred CCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccCCC
Q 003053 76 VDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 148 (852)
Q Consensus 76 vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~~ 148 (852)
++..+|.++|+.||.|.+|+++. + ..| ++|| ||+|.+.++|.+|+..|||..+.|+.|.|+......
T Consensus 88 ~~~~~~~d~f~~~g~ilS~kv~~---~-~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 88 IDNKSLYDTFSEFGNILSCKVAT---D-ENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred cCcHHHHHHHHhhcCeeEEEEEE---c-CCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 99999999999999999999994 3 334 8999 999999999999999999999999999998766543
No 48
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=6.9e-12 Score=122.81 Aligned_cols=84 Identities=14% Similarity=0.418 Sum_probs=77.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
.+.-|||||||+..||.+|.-+|++||.|+.|.+++ |..||+++||||++|++..+.--|+..|||..|.|+.|+|+
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiR---Dk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIR---DKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEe---cCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 467899999999999999999999999999999996 99999999999999999999999999999999999999998
Q ss_pred eccCCCC
Q 003053 143 WGKSVAL 149 (852)
Q Consensus 143 ~ak~~~~ 149 (852)
.-.....
T Consensus 111 Hv~~Yk~ 117 (219)
T KOG0126|consen 111 HVSNYKK 117 (219)
T ss_pred ecccccC
Confidence 7554443
No 49
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=1.8e-10 Score=120.78 Aligned_cols=85 Identities=18% Similarity=0.407 Sum_probs=79.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
...+||||+-|+.+++|..|+..|+.||+|+.|.|+ .|..||+++|||||+|++..+...|....+|.+|+|+.|-|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV---~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLV---RDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEe---eecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 357899999999999999999999999999999999 48899999999999999999999999999999999999999
Q ss_pred eeccCCCC
Q 003053 142 GWGKSVAL 149 (852)
Q Consensus 142 ~~ak~~~~ 149 (852)
++-....+
T Consensus 176 DvERgRTv 183 (335)
T KOG0113|consen 176 DVERGRTV 183 (335)
T ss_pred Eecccccc
Confidence 99776554
No 50
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=6.7e-11 Score=121.75 Aligned_cols=88 Identities=27% Similarity=0.439 Sum_probs=81.8
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCe
Q 003053 58 DDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 137 (852)
Q Consensus 58 ~~~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~ 137 (852)
....|.+|||||-.||.+..+.+|..+|-.||.|++.|+. .|+.|..+|+||||.|++..+|+.||.+|||+.|+-+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVF---vDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMK 355 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVF---VDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK 355 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeee---ehhccccccceeeEecCCchhHHHHHHHhcchhhhhh
Confidence 3456889999999999999999999999999999999998 5889999999999999999999999999999999999
Q ss_pred EEEEeeccCCC
Q 003053 138 ELKIGWGKSVA 148 (852)
Q Consensus 138 ~l~V~~ak~~~ 148 (852)
+|+|..-+++.
T Consensus 356 RLKVQLKRPkd 366 (371)
T KOG0146|consen 356 RLKVQLKRPKD 366 (371)
T ss_pred hhhhhhcCccc
Confidence 99998877654
No 51
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=7e-11 Score=125.85 Aligned_cols=81 Identities=27% Similarity=0.605 Sum_probs=75.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeec
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 144 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~a 144 (852)
|.+|||.+.+++.|+.|+..|..||+|++|.+.| |..|++.+||+||+|+-.+.|+-|++.|||.+++|+.|+|+
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSW---Dp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg-- 188 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSW---DPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG-- 188 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeeccc---ccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc--
Confidence 6899999999999999999999999999999998 88999999999999999999999999999999999999995
Q ss_pred cCCCCC
Q 003053 145 KSVALP 150 (852)
Q Consensus 145 k~~~~p 150 (852)
++.++|
T Consensus 189 rPsNmp 194 (544)
T KOG0124|consen 189 RPSNMP 194 (544)
T ss_pred CCCCCc
Confidence 454443
No 52
>smart00362 RRM_2 RNA recognition motif.
Probab=99.09 E-value=5.8e-10 Score=93.19 Aligned_cols=71 Identities=35% Similarity=0.607 Sum_probs=65.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 66 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
+|||+|||..+++++|.++|.+||.|..+.++. +. +.++++|||+|.+.++|+.|+..++|..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~---~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPK---DT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEec---CC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 589999999999999999999999999999884 22 667899999999999999999999999999999887
No 53
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=5e-10 Score=122.80 Aligned_cols=90 Identities=22% Similarity=0.363 Sum_probs=80.2
Q ss_pred CCCCCCCCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCce
Q 003053 54 PGSFDDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV 133 (852)
Q Consensus 54 ~~~~~~~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~ 133 (852)
|+......+.+|-||||.||.++.|++|.-+|++.|+|-.++|| +|+.+|.+||||||+|.+.++|+.||+.||+.+
T Consensus 73 P~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLM---mD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~E 149 (506)
T KOG0117|consen 73 PGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLM---MDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYE 149 (506)
T ss_pred CcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEe---ecccCCCCcceEEEEeecHHHHHHHHHHhhCcc
Confidence 33333344778999999999999999999999999999999999 588999999999999999999999999999999
Q ss_pred ec-CeEEEEeeccC
Q 003053 134 VY-EYELKIGWGKS 146 (852)
Q Consensus 134 l~-G~~l~V~~ak~ 146 (852)
|. |+.|.|..+..
T Consensus 150 ir~GK~igvc~Sva 163 (506)
T KOG0117|consen 150 IRPGKLLGVCVSVA 163 (506)
T ss_pred ccCCCEeEEEEeee
Confidence 94 99999976643
No 54
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=1.1e-09 Score=107.73 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=71.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
..++|||||||.++-+.+|+.+|.+||.|..|.+..|+ ...+||||+|++..+|+.||..-+|..++|+.|+|.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~------g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVE 78 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP------GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVE 78 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC------CCCCeeEEEecCccchhhhhhcccccccCcceEEEE
Confidence 56899999999999999999999999999999887422 345899999999999999999999999999999999
Q ss_pred eccCC
Q 003053 143 WGKSV 147 (852)
Q Consensus 143 ~ak~~ 147 (852)
|+..-
T Consensus 79 fprgg 83 (241)
T KOG0105|consen 79 FPRGG 83 (241)
T ss_pred eccCC
Confidence 97653
No 55
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=2.4e-10 Score=107.07 Aligned_cols=83 Identities=14% Similarity=0.309 Sum_probs=78.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
.+.-|||.++....||+++...|+.||+|+.+.+- .|..||..+||++|+|.+.++|+.|+.+|||..|.|..|.|+
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLN---LDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLN---LDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeec---cccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 45689999999999999999999999999999988 488999999999999999999999999999999999999999
Q ss_pred eccCCC
Q 003053 143 WGKSVA 148 (852)
Q Consensus 143 ~ak~~~ 148 (852)
|+....
T Consensus 148 w~Fv~g 153 (170)
T KOG0130|consen 148 WCFVKG 153 (170)
T ss_pred EEEecC
Confidence 997654
No 56
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.06 E-value=9e-10 Score=114.37 Aligned_cols=76 Identities=22% Similarity=0.277 Sum_probs=67.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
+.+.+|||+||++.+|+++|+++|+.||.|.+|.|+. | +..++||||+|.+.++|+.|+ .|||..|.|+.|.|
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~---D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~I 75 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIR---S---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCI 75 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEec---C---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEE
Confidence 3567999999999999999999999999999999984 3 345589999999999999999 59999999999998
Q ss_pred eec
Q 003053 142 GWG 144 (852)
Q Consensus 142 ~~a 144 (852)
.-.
T Consensus 76 t~~ 78 (243)
T PLN03121 76 TRW 78 (243)
T ss_pred EeC
Confidence 643
No 57
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.05 E-value=5.4e-10 Score=117.47 Aligned_cols=80 Identities=28% Similarity=0.505 Sum_probs=75.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEee
Q 003053 64 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 143 (852)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ 143 (852)
.++|||||||..+++++|..+|.+||.|..|.|.. +..+|.++|||||+|.+.++|..|+..|+|..|.|+.|.|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~---d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVR---DRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeee---ccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeec
Confidence 58999999999999999999999999999999984 667899999999999999999999999999999999999999
Q ss_pred ccC
Q 003053 144 GKS 146 (852)
Q Consensus 144 ak~ 146 (852)
+..
T Consensus 192 ~~~ 194 (306)
T COG0724 192 AQP 194 (306)
T ss_pred ccc
Confidence 764
No 58
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.05 E-value=3.4e-11 Score=129.68 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=55.8
Q ss_pred CCCCCCccccccccCCCcc--cCCCCCCcHHHHH-HHHHhhhhhhhhhhhhhhhccCCcHHHHH
Q 003053 673 GDGPSKADDVDFTIDASIP--VQPDSGMNEEQRQ-KLRRLEVSLIEYRESLEERGIKSSEEIEK 733 (852)
Q Consensus 673 ~~~~~~~~~vef~~~~sv~--~~~~~~~~~~~~~-k~~~~~~ai~k~~~~~~e~~~k~~ee~~k 733 (852)
+.+...+++++|++|+.|+ |.+||+|++++++ +++|+.++|++++++.++.+++.|||++.
T Consensus 89 ~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirR 152 (479)
T KOG4676|consen 89 EVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRR 152 (479)
T ss_pred CCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHh
Confidence 3444566999999999999 9999999999999 99999999999999999999999999983
No 59
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=8.1e-10 Score=99.24 Aligned_cols=78 Identities=23% Similarity=0.378 Sum_probs=70.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
.+.-|||.|||+.+|.++..++|++||.|..|+|-. +...+|.|||.|++..+|.+|++.|+|..+.++.|.|.
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~------~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN------TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecC------ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 456799999999999999999999999999999973 33567999999999999999999999999999999998
Q ss_pred eccC
Q 003053 143 WGKS 146 (852)
Q Consensus 143 ~ak~ 146 (852)
|-.+
T Consensus 91 yyq~ 94 (124)
T KOG0114|consen 91 YYQP 94 (124)
T ss_pred ecCH
Confidence 7543
No 60
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.04 E-value=7.1e-10 Score=128.62 Aligned_cols=81 Identities=16% Similarity=0.315 Sum_probs=74.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
....+|||+|||..+++++|+++|++||.|..|+|+ .|..+|+++|||||+|.+.++|.+|+. |+|..|.|+.|.|
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~---~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v 162 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCI---KDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIV 162 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe---ecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEE
Confidence 346799999999999999999999999999999999 477889999999999999999999996 9999999999999
Q ss_pred eeccC
Q 003053 142 GWGKS 146 (852)
Q Consensus 142 ~~ak~ 146 (852)
.+++.
T Consensus 163 ~~~~~ 167 (457)
T TIGR01622 163 QSSQA 167 (457)
T ss_pred eecch
Confidence 87654
No 61
>smart00360 RRM RNA recognition motif.
Probab=99.01 E-value=1.2e-09 Score=90.91 Aligned_cols=71 Identities=31% Similarity=0.558 Sum_probs=64.9
Q ss_pred EcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 69 VGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 69 VgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
|+|||..+++++|+.+|.+||.|..+.+.. +..++.++|+|||+|.+.++|..|+..|+|..+.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~---~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVR---DKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEe---CCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999999999999999999884 44467889999999999999999999999999999998873
No 62
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.00 E-value=3.7e-10 Score=111.11 Aligned_cols=80 Identities=26% Similarity=0.486 Sum_probs=74.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
+..|||||||+..++++.|.++|-+.|+|..+.|. .|..+...+|||||+|.++++|+-|+..||+..|.|++|+|.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iP---kDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIP---KDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecc---hhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 45799999999999999999999999999999988 488888899999999999999999999999999999999997
Q ss_pred ecc
Q 003053 143 WGK 145 (852)
Q Consensus 143 ~ak 145 (852)
-+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 765
No 63
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.99 E-value=8.6e-10 Score=124.94 Aligned_cols=82 Identities=21% Similarity=0.483 Sum_probs=78.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeec
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 144 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~a 144 (852)
+.+||||+|++++++.|..+|+..|.|.++++++ |.+||+.+||||++|.+.++|..|+..|||..+.|++|+|.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~---D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVY---DRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecc---cccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecc
Confidence 8999999999999999999999999999999995 8899999999999999999999999999999999999999998
Q ss_pred cCCCC
Q 003053 145 KSVAL 149 (852)
Q Consensus 145 k~~~~ 149 (852)
.....
T Consensus 96 ~~~~~ 100 (435)
T KOG0108|consen 96 SNRKN 100 (435)
T ss_pred cccch
Confidence 76553
No 64
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=98.98 E-value=3.7e-09 Score=102.17 Aligned_cols=131 Identities=25% Similarity=0.370 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCC-Cchhh
Q 003053 325 SQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVK-NASAY 403 (852)
Q Consensus 325 ~~~~~l~~lL~~Lt~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~-na~~y 403 (852)
+.|.+|..+|+.||.++.||++|..|+|+|.+.++++.+||++.|-.. +++.|+.+||+| |.|+.++.... ....|
T Consensus 5 E~r~~F~~~L~~L~aS~qSi~kaa~fAlk~~~~~edL~~cIle~le~~--~lN~R~nI~~fI-D~l~e~~~~~~~~~~~Y 81 (139)
T PF12243_consen 5 EVRMQFTQLLRRLNASQQSIQKAAQFALKNRDMEEDLWSCILEQLEKE--NLNTRINIFYFI-DSLCESSQKSKKYNYPY 81 (139)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHHccccHHHHHHHHHHHHhcc--chhhHHHHHHHH-HHHHHHHHhcccccchh
Confidence 567899999999999999999999999999999999999999999666 689999999999 55666654333 35679
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhccCccccHHHHHHHHHHhc
Q 003053 404 RTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFL 464 (852)
Q Consensus 404 r~~fe~~Lp~if~~l~~~~~~~~~r~~a~~~k~kv~~vL~iWe~~~vf~~~~l~~L~~~f~ 464 (852)
...++..||.|+..... .+...+ .....+.+||+.|.++.+++.+.+..+...+.
T Consensus 82 v~~l~~dL~~Iv~~V~P-----~~~~g~-~N~~~~~kvL~~~~~k~~l~~~~~~~~~~~l~ 136 (139)
T PF12243_consen 82 VSMLQRDLPRIVDAVAP-----PDNSGA-ANLKSVRKVLKNWSKKKILDPEEYEEIEASLK 136 (139)
T ss_pred HHHHHHHHHHHHHHhCC-----CCCccc-hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 99999999999865432 222222 67889999999999999999999999877653
No 65
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.97 E-value=5.3e-10 Score=125.74 Aligned_cols=78 Identities=29% Similarity=0.546 Sum_probs=73.7
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccC
Q 003053 67 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 146 (852)
Q Consensus 67 LfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~ 146 (852)
||||||.+++++++|+.+|..||.|..|.++ .|.+||+++|||||+|.+.++|.+|++.|||.+|-|+.|+|+...-
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~---~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLT---KDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeec---cccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 9999999999999999999999999999998 5888999999999999999999999999999999999999987654
Q ss_pred C
Q 003053 147 V 147 (852)
Q Consensus 147 ~ 147 (852)
.
T Consensus 358 r 358 (549)
T KOG0147|consen 358 R 358 (549)
T ss_pred e
Confidence 3
No 66
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.95 E-value=1.3e-09 Score=113.95 Aligned_cols=110 Identities=18% Similarity=0.321 Sum_probs=94.5
Q ss_pred CcceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCC
Q 003053 1 MRSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLS 73 (852)
Q Consensus 1 ~r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp 73 (852)
+..||||-- =|+..+||..|.+. -|.|.-+.++ ...+|+|+|||+.
T Consensus 35 vKNYgFVHiEdktaaedairNLhgYtLhg~--nInVeaSksK-------------------------sk~stkl~vgNis 87 (346)
T KOG0109|consen 35 VKNYGFVHIEDKTAAEDAIRNLHGYTLHGV--NINVEASKSK-------------------------SKASTKLHVGNIS 87 (346)
T ss_pred ecccceEEeecccccHHHHhhcccceecce--EEEEEecccc-------------------------CCCccccccCCCC
Confidence 356888866 28999999999888 6666554442 2247899999999
Q ss_pred CCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccCCC
Q 003053 74 PQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 148 (852)
Q Consensus 74 ~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~~ 148 (852)
+.++.++|+..|.+||+|..++|+ ++|+||.|+..++|..|+..|||.++.|++|+|..+.+.-
T Consensus 88 ~tctn~ElRa~fe~ygpviecdiv-----------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 88 PTCTNQELRAKFEKYGPVIECDIV-----------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred ccccCHHHhhhhcccCCceeeeee-----------cceeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 999999999999999999999998 3899999999999999999999999999999999887653
No 67
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.94 E-value=5.1e-09 Score=87.92 Aligned_cols=74 Identities=30% Similarity=0.597 Sum_probs=66.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEee
Q 003053 66 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 143 (852)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ 143 (852)
+|||+|||..+++++|..+|..||.|..+.+.. +..+ ..+++|||+|.+.++|..|+..++|..+.|+.|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~---~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVR---DKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEee---CCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999884 2222 5689999999999999999999999999999999875
No 68
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.94 E-value=2e-10 Score=123.87 Aligned_cols=74 Identities=19% Similarity=0.430 Sum_probs=59.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCcccc-CCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 66 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEER-RRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~t-g~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
.|.|.||.+.+|.+.++.+|+..|.|..++|+ |..+..+ --..-.|||.|.+...+..|- .|.++++-++.|.|
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrly-p~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv 83 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLY-PNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIV 83 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhcccccccccc-CCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEE
Confidence 79999999999999999999999999999987 3222222 223458999999998888775 47778877777766
No 69
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.93 E-value=4.5e-09 Score=85.89 Aligned_cols=56 Identities=29% Similarity=0.561 Sum_probs=50.4
Q ss_pred HHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeec
Q 003053 81 LLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 144 (852)
Q Consensus 81 L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~a 144 (852)
|.++|++||.|..+.+.. ..+++|||+|.+.++|..|+..|||..++|+.|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~--------~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFK--------KKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEET--------TSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEe--------CCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 678999999999999983 11599999999999999999999999999999999996
No 70
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.89 E-value=2.4e-09 Score=111.93 Aligned_cols=75 Identities=23% Similarity=0.443 Sum_probs=70.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeec
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 144 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~a 144 (852)
.+|||||||.++++.+|+.+|.+||+|..|.|+ |+||||..++...|+.||..|+|..|+|..|+|.-+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaS 71 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEAS 71 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----------cccceEEeecccccHHHHhhcccceecceEEEEEec
Confidence 369999999999999999999999999999999 389999999999999999999999999999999999
Q ss_pred cCCCCC
Q 003053 145 KSVALP 150 (852)
Q Consensus 145 k~~~~p 150 (852)
|++..+
T Consensus 72 ksKsk~ 77 (346)
T KOG0109|consen 72 KSKSKA 77 (346)
T ss_pred cccCCC
Confidence 887543
No 71
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.88 E-value=1.4e-08 Score=115.09 Aligned_cols=59 Identities=24% Similarity=0.421 Sum_probs=54.2
Q ss_pred ccccCCCCcchhhHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccccccCCCCCccceeee
Q 003053 201 IMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWR 260 (852)
Q Consensus 201 v~v~~P~d~~~~~~Id~~a~~V~~~G~~FE~~~~~~~~~np~f~FL~d~~~~~h~YYrwk 260 (852)
+.+..|....+-.||++||.||+++|.+||-+|+.++++||+|.||- +++-.|.||+|-
T Consensus 178 ~~~eLPpt~KlH~IIerTaSFV~~~G~Q~EIvlkaKQ~~N~qFgFL~-fDH~Lnpyykfl 236 (878)
T KOG1847|consen 178 LRQELPPTEKLHQIIERTASFVSKHGGQSEIVLKAKQGDNPQFGFLM-FDHHLNPYYKFL 236 (878)
T ss_pred ccccCCchHHHHHHHHHHHHHHhhcCcceEEEeeeccCCCcccceec-cccccCHHHHHH
Confidence 45667778899999999999999999999999999999999999995 899999999983
No 72
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.85 E-value=4.5e-09 Score=114.92 Aligned_cols=84 Identities=15% Similarity=0.427 Sum_probs=74.9
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCce-ecC--
Q 003053 60 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV-VYE-- 136 (852)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~-l~G-- 136 (852)
.|...-+||||.+|..++|.+|+.+|++||.|.+|.|+ +|+.|+.++|||||.|.++++|.+|+.+|++.. |.|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~---kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~ 106 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLI---KDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMH 106 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEee---cccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCC
Confidence 45667789999999999999999999999999999999 599999999999999999999999999998865 544
Q ss_pred eEEEEeeccC
Q 003053 137 YELKIGWGKS 146 (852)
Q Consensus 137 ~~l~V~~ak~ 146 (852)
.+|.|.||..
T Consensus 107 ~pvqvk~Ad~ 116 (510)
T KOG0144|consen 107 HPVQVKYADG 116 (510)
T ss_pred cceeecccch
Confidence 6788887753
No 73
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=2.3e-09 Score=120.42 Aligned_cols=135 Identities=24% Similarity=0.347 Sum_probs=104.3
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
||||||.| .|+.+|+|....+. .+.+.-+.. +..+...+...+..... .........+|||.||+.
T Consensus 208 ~~~gfv~f~~~e~a~~av~~l~~~~~~~~--~~~V~~aqk-k~e~~~~l~~~~~~~~~----~~~~~~~~~nl~vknld~ 280 (369)
T KOG0123|consen 208 KGFGFVNFENPEDAKKAVETLNGKIFGDK--ELYVGRAQK-KSEREAELKRKFEQEFA----KRSVSLQGANLYVKNLDE 280 (369)
T ss_pred CCccceeecChhHHHHHHHhccCCcCCcc--ceeeccccc-chhhHHHHhhhhHhhhh----hccccccccccccccCcc
Confidence 79999999 39999999888765 555544443 22232222222111111 111234577999999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccCC
Q 003053 75 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSV 147 (852)
Q Consensus 75 ~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~ 147 (852)
.++.+.|..+|+.||.|.+++|+. ...|+++|||||+|.+.++|..|+..|||..++|+.|.|.++...
T Consensus 281 ~~~~e~L~~~f~~~GeI~s~kv~~----~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~ 349 (369)
T KOG0123|consen 281 TLSDEKLRKIFSSFGEITSAKVMV----DENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRK 349 (369)
T ss_pred ccchhHHHHHHhcccceeeEEEEe----ccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhh
Confidence 999999999999999999999984 456889999999999999999999999999999999999988743
No 74
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.82 E-value=2.1e-08 Score=102.45 Aligned_cols=135 Identities=19% Similarity=0.354 Sum_probs=103.4
Q ss_pred CcceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCCCCCC------C------------CCCCCCCC-----
Q 003053 1 MRSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPSSRFD------E------------LPDDFDPS----- 50 (852)
Q Consensus 1 ~r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~------~------------~p~~~~~~----- 50 (852)
|||+|||+|. |+..|+|+...++ |+++.++.+....-.. + .+.....+
T Consensus 51 mRGQA~VvFk~~~~As~A~r~l~gfpFygK--~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~ 128 (221)
T KOG4206|consen 51 MRGQAFVVFKETEAASAALRALQGFPFYGK--PMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYN 128 (221)
T ss_pred ccCceEEEecChhHHHHHHHHhcCCcccCc--hhheecccCccchhhccCceeccccCccccccccccCCcccccccccc
Confidence 8999999994 9999999999999 9999998765321111 0 00000000
Q ss_pred ---CCCCCCC-CCCCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHH
Q 003053 51 ---GKLPGSF-DDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 126 (852)
Q Consensus 51 ---~~~~~~~-~~~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai 126 (852)
...|..+ ....+.+..||+.|||..++.+.|..+|.+|.....|+++. ..++.|||+|.+...|..|.
T Consensus 129 ~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~--------~~~~iAfve~~~d~~a~~a~ 200 (221)
T KOG4206|consen 129 MNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIP--------PRSGIAFVEFLSDRQASAAQ 200 (221)
T ss_pred cccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEecc--------CCCceeEEecchhhhhHHHh
Confidence 0011111 23356678899999999999999999999999999999984 23589999999999999999
Q ss_pred HHhCCceec-CeEEEEeecc
Q 003053 127 DEMQGVVVY-EYELKIGWGK 145 (852)
Q Consensus 127 ~~lnG~~l~-G~~l~V~~ak 145 (852)
..++|..|- ...|.|.+++
T Consensus 201 ~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 201 QALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hhhccceeccCceEEecccC
Confidence 999999987 8899998875
No 75
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=5.1e-09 Score=111.73 Aligned_cols=87 Identities=23% Similarity=0.416 Sum_probs=81.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 60 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
..|+-..|||..|++-+|.++|.-+|+.||+|.+|.|++ |..||-+-.||||+|.+.+++++|.-.|++..|+.++|
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIR---D~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIR---DRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEe---cccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 345667899999999999999999999999999999996 88899999999999999999999999999999999999
Q ss_pred EEeeccCCCC
Q 003053 140 KIGWGKSVAL 149 (852)
Q Consensus 140 ~V~~ak~~~~ 149 (852)
.|+|++++..
T Consensus 312 HVDFSQSVsk 321 (479)
T KOG0415|consen 312 HVDFSQSVSK 321 (479)
T ss_pred Eeehhhhhhh
Confidence 9999988653
No 76
>smart00361 RRM_1 RNA recognition motif.
Probab=98.81 E-value=1.4e-08 Score=87.16 Aligned_cols=61 Identities=18% Similarity=0.321 Sum_probs=53.9
Q ss_pred HHHHHHHhc----cCCCeeEEE-EeccCCcccc--CCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 78 ENFLLRTFG----RFGPIASVK-IMWPRTEEER--RRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 78 e~~L~~~F~----~fG~I~~vk-i~~pr~d~~t--g~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
+++|+++|+ +||.|.+|. |+. +..+ ++++|||||+|.+.++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~---~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYI---DNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEe---CCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888998 999999995 654 3344 889999999999999999999999999999999986
No 77
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.79 E-value=1.5e-08 Score=108.49 Aligned_cols=78 Identities=31% Similarity=0.674 Sum_probs=69.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHH-hCCceecCeE
Q 003053 60 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDE-MQGVVVYEYE 138 (852)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~-lnG~~l~G~~ 138 (852)
.|...++||||+|...++|.+|+.+|.+||.|.++.++ ..++||||+|.++.+|+.|... +|-..|.|++
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~---------~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL---------PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEee---------cccccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 45567899999999999999999999999999999998 3567999999999999998775 5666689999
Q ss_pred EEEeeccC
Q 003053 139 LKIGWGKS 146 (852)
Q Consensus 139 l~V~~ak~ 146 (852)
|+|.|+++
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99999987
No 78
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.78 E-value=1.1e-08 Score=118.79 Aligned_cols=79 Identities=28% Similarity=0.538 Sum_probs=73.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
-++|||||+|+.+|+|.+|..+|+.||.|.+|.++ .+++||||++..+.+|++|+..|+...+.++.|+|.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li---------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI---------PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIA 490 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeec---------cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence 46899999999999999999999999999999998 477999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 003053 143 WGKSVALP 150 (852)
Q Consensus 143 ~ak~~~~p 150 (852)
||....+-
T Consensus 491 Wa~g~G~k 498 (894)
T KOG0132|consen 491 WAVGKGPK 498 (894)
T ss_pred eeccCCcc
Confidence 99876543
No 79
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.71 E-value=3.1e-08 Score=101.26 Aligned_cols=77 Identities=29% Similarity=0.497 Sum_probs=71.5
Q ss_pred eEEEcCCCCCCCHHHHHH----HhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 66 NLYVGNLSPQVDENFLLR----TFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 66 tLfVgnLp~~vte~~L~~----~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
||||.||+..+..++|+. +|++||.|..|.... +.+.+|-|||.|.+.+.|-.|+.+|+|..+.|++|+|
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k------t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK------TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC------CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 999999999999998877 999999999998773 6688999999999999999999999999999999999
Q ss_pred eeccCCC
Q 003053 142 GWGKSVA 148 (852)
Q Consensus 142 ~~ak~~~ 148 (852)
.||+...
T Consensus 85 qyA~s~s 91 (221)
T KOG4206|consen 85 QYAKSDS 91 (221)
T ss_pred ecccCcc
Confidence 9998754
No 80
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.66 E-value=3.2e-08 Score=107.89 Aligned_cols=83 Identities=23% Similarity=0.351 Sum_probs=74.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
.+.+||||+||..+++++|+++|.+||.|..+.+| .|..+.+.+|||||+|.+.+++++++. ...+.|.|+.+.|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~---~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevk 171 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIM---YDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVK 171 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEe---ecccccccccceeeEeccccccceecc-cceeeecCceeeEe
Confidence 46689999999999999999999999999999999 488899999999999999999998875 57888999999998
Q ss_pred eccCCCC
Q 003053 143 WGKSVAL 149 (852)
Q Consensus 143 ~ak~~~~ 149 (852)
-|-++.+
T Consensus 172 rA~pk~~ 178 (311)
T KOG4205|consen 172 RAIPKEV 178 (311)
T ss_pred eccchhh
Confidence 8877654
No 81
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.55 E-value=1.8e-07 Score=94.31 Aligned_cols=79 Identities=18% Similarity=0.292 Sum_probs=71.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccC-CCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRF-GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~f-G~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....-+||+.+|..+.+..+..+|.+| |.|..+++.+ ...||.++|||||+|++.+.|+-|-+.||+..|+|+.|.
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsR---nkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSR---NKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeec---ccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 345679999999999999999999998 6677777765 778999999999999999999999999999999999999
Q ss_pred Eee
Q 003053 141 IGW 143 (852)
Q Consensus 141 V~~ 143 (852)
|.+
T Consensus 124 c~v 126 (214)
T KOG4208|consen 124 CHV 126 (214)
T ss_pred eEE
Confidence 976
No 82
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.54 E-value=2.7e-06 Score=99.29 Aligned_cols=132 Identities=17% Similarity=0.295 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhc----c-cCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCC-CCC
Q 003053 326 QRDEFEDMLRAL----T-LERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAP-VKN 399 (852)
Q Consensus 326 ~~~~l~~lL~~L----t-~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~-~~n 399 (852)
....|...|..| + .++..|......+|+|.+..+.||..+.+++.... ...||-.||+|--|+-.+.-. .++
T Consensus 3 ~v~~Fn~eL~SL~DsK~~IS~sKi~~ITkaAikaIk~ykhVVqsVeKfi~kCk--pe~Kl~gLYVIDSIVRqsrhq~~~~ 80 (894)
T KOG0132|consen 3 AVKEFNGELDSLEDSKPGISGSKILKITKAAIKAIKLYKHVVQSVEKFIKKCK--PEYKLPGLYVIDSIVRQSRHQFGKE 80 (894)
T ss_pred HHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--cccccCeeEEehHHHHHHHHhhccc
Confidence 456788888887 3 68899999999999999999999999999997654 578999999999998776532 224
Q ss_pred chhhHHHHHhhhHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhccCccccHHHHHHHHHHhccCCC
Q 003053 400 ASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGN 468 (852)
Q Consensus 400 a~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~a~~~k~kv~~vL~iWe~~~vf~~~~l~~L~~~f~~~~~ 468 (852)
-..|-..|...+-.-| ..+|+. ..+.+.++.+||++|...+||-.+.|.-|.++..+..+
T Consensus 81 kd~F~prf~~n~~~tf---~~L~~c------~~edks~iIrvlNlwqkn~VfK~e~IqpLlDm~~~s~~ 140 (894)
T KOG0132|consen 81 KDVFGPRFSKNFTGTF---QNLYEC------PQEDKSDIIRVLNLWQKNNVFKSEIIQPLLDMADGSGL 140 (894)
T ss_pred ccccCCccchhHHHHH---HHHHhc------CHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHhccCc
Confidence 4445555555555533 333442 24789999999999999999999999999999877766
No 83
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.53 E-value=2.8e-07 Score=106.80 Aligned_cols=81 Identities=26% Similarity=0.348 Sum_probs=69.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeec
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 144 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~a 144 (852)
++|||.||++.+|.+.|...|..+|.|.++.|..-+.....-.+.|||||+|.+.++|+.|+..|||+.|+|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 34999999999999999999999999999988731111112235699999999999999999999999999999999998
Q ss_pred c
Q 003053 145 K 145 (852)
Q Consensus 145 k 145 (852)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 6
No 84
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.53 E-value=2.9e-07 Score=103.29 Aligned_cols=83 Identities=19% Similarity=0.317 Sum_probs=74.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
.-+.||||.+|+..+--.+|+.+|++||.|+-.+|+ ++..+--.++||||++.+.++|.+||+.|+-..|+|+.|.|
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVV---TNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISV 479 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVV---TNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISV 479 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeee---ecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeee
Confidence 345789999999999999999999999999999999 45555556899999999999999999999999999999999
Q ss_pred eeccCC
Q 003053 142 GWGKSV 147 (852)
Q Consensus 142 ~~ak~~ 147 (852)
.-+|.-
T Consensus 480 EkaKNE 485 (940)
T KOG4661|consen 480 EKAKNE 485 (940)
T ss_pred eecccC
Confidence 888764
No 85
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.46 E-value=2.1e-07 Score=96.15 Aligned_cols=77 Identities=26% Similarity=0.497 Sum_probs=71.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
.-..||.|-|.-+|+.+.|...|.+|-.....++++ |..||+++|||||.|.+.+++.+|+.+|||+.++.++|++.
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviR---dkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIR---DKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccc---cccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 346899999999999999999999999888888884 88999999999999999999999999999999999998874
No 86
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.42 E-value=1.1e-06 Score=89.18 Aligned_cols=85 Identities=21% Similarity=0.273 Sum_probs=70.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceec---CeEE
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY---EYEL 139 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~---G~~l 139 (852)
.-.||||.+||.+|...+|..+|..|-....+.|.+ +++...--+.+|||+|.+..+|..|+.+|||..++ +..|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~--Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKY--TSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeee--ccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 357999999999999999999999987766666653 23222223479999999999999999999999986 8899
Q ss_pred EEeeccCCCC
Q 003053 140 KIGWGKSVAL 149 (852)
Q Consensus 140 ~V~~ak~~~~ 149 (852)
+|.+||+...
T Consensus 111 hiElAKSNtK 120 (284)
T KOG1457|consen 111 HIELAKSNTK 120 (284)
T ss_pred EeeehhcCcc
Confidence 9999997653
No 87
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.34 E-value=9.5e-07 Score=91.61 Aligned_cols=80 Identities=26% Similarity=0.471 Sum_probs=70.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCce-ecC--eEE
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV-VYE--YEL 139 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~-l~G--~~l 139 (852)
...+||||-|...-.|++++.+|..||.|.+|.+++ ...|.+|||+||.|.+..+|+.||..|+|.. +.| ..|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlr----g~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSL 93 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLR----GPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSL 93 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEec----CCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccce
Confidence 456899999999999999999999999999999985 4467899999999999999999999999976 444 568
Q ss_pred EEeeccC
Q 003053 140 KIGWGKS 146 (852)
Q Consensus 140 ~V~~ak~ 146 (852)
.|.|+..
T Consensus 94 VVK~ADT 100 (371)
T KOG0146|consen 94 VVKFADT 100 (371)
T ss_pred EEEeccc
Confidence 8888754
No 88
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.33 E-value=1.5e-06 Score=91.55 Aligned_cols=85 Identities=25% Similarity=0.316 Sum_probs=75.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
+...++|+|.||+..|++++|+++|..||.++.+-|.+ ...|++.|+|-|.|...++|.+|+..+||..++|+.|+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy----~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk 155 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHY----DRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMK 155 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeecc----CCCCCCCccceeeecchHhHHHHHHHhcCcccCCceee
Confidence 34457899999999999999999999999999998885 45788999999999999999999999999999999999
Q ss_pred EeeccCCCC
Q 003053 141 IGWGKSVAL 149 (852)
Q Consensus 141 V~~ak~~~~ 149 (852)
+....+..+
T Consensus 156 ~~~i~~~~~ 164 (243)
T KOG0533|consen 156 IEIISSPSQ 164 (243)
T ss_pred eEEecCccc
Confidence 987665544
No 89
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.29 E-value=1e-06 Score=96.59 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=70.0
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 60 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
..++.|+|||.|||++.|.+.|++-|..||.|..+.|| +.|+++| .|.|.+.++|++|+..|||..|.|+.|
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim------e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I 603 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM------ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNI 603 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhh------ccCCccc--eEEecCHHHHHHHHHHhccCcccCcee
Confidence 45678899999999999999999999999999999998 3566666 899999999999999999999999999
Q ss_pred EEeec
Q 003053 140 KIGWG 144 (852)
Q Consensus 140 ~V~~a 144 (852)
+|.|.
T Consensus 604 ~V~y~ 608 (608)
T KOG4212|consen 604 KVTYF 608 (608)
T ss_pred eeeeC
Confidence 99873
No 90
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.26 E-value=3.3e-06 Score=92.77 Aligned_cols=76 Identities=18% Similarity=0.340 Sum_probs=70.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHh-ccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTF-GRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F-~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
....+||.|+|+++..++|+++| .+.|.|..|.++. ...|+.+|||.|+|.+++.+++|++.||-+.+.|++|.|
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~----D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~v 118 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLF----DESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVV 118 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeec----ccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEE
Confidence 34569999999999999999999 5889999999984 468999999999999999999999999999999999999
Q ss_pred e
Q 003053 142 G 142 (852)
Q Consensus 142 ~ 142 (852)
.
T Consensus 119 K 119 (608)
T KOG4212|consen 119 K 119 (608)
T ss_pred e
Confidence 5
No 91
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.20 E-value=6.4e-06 Score=88.67 Aligned_cols=83 Identities=14% Similarity=0.234 Sum_probs=73.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCee--------EEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCc
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIA--------SVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 132 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~--------~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~ 132 (852)
...+++|||.|||.++|-+++.++|++||.|. .|++.+ + ..|.-+|=|.++|...++.+-|+..|++.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYr---d-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~ 206 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYR---D-NQGKLKGDALCCYIKRESVELAIKILDED 206 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEe---c-CCCCccCceEEEeecccHHHHHHHHhCcc
Confidence 44678899999999999999999999999885 366663 3 34899999999999999999999999999
Q ss_pred eecCeEEEEeeccCC
Q 003053 133 VVYEYELKIGWGKSV 147 (852)
Q Consensus 133 ~l~G~~l~V~~ak~~ 147 (852)
.|.|+.|+|..|+-.
T Consensus 207 ~~rg~~~rVerAkfq 221 (382)
T KOG1548|consen 207 ELRGKKLRVERAKFQ 221 (382)
T ss_pred cccCcEEEEehhhhh
Confidence 999999999988744
No 92
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.14 E-value=2.1e-06 Score=93.81 Aligned_cols=83 Identities=22% Similarity=0.313 Sum_probs=71.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
..++||||+|++.++++.|+..|++||.|..|.+|+ |..+++++||+||+|.+.+...+++.. .-+.|.|+.|.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~---d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMR---DPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEec---cCCCCCcccccceecCCCcchheeecc-cccccCCccccce
Confidence 568999999999999999999999999999999995 888899999999999998888888753 3466888888887
Q ss_pred eccCCCC
Q 003053 143 WGKSVAL 149 (852)
Q Consensus 143 ~ak~~~~ 149 (852)
-+.+...
T Consensus 81 ~av~r~~ 87 (311)
T KOG4205|consen 81 RAVSRED 87 (311)
T ss_pred eccCccc
Confidence 6665543
No 93
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.07 E-value=2.7e-06 Score=87.89 Aligned_cols=71 Identities=23% Similarity=0.408 Sum_probs=66.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeec
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 144 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~a 144 (852)
..+|||+||..+.+.+|+.+|..||.|-.|.+.. |||||.|.+..+|+.|+..+||++|.|-.+.|.|+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-----------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~ 70 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN-----------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHA 70 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec-----------ccceeccCchhhhhcccchhcCceecceeeeeecc
Confidence 4689999999999999999999999999998773 89999999999999999999999999988999998
Q ss_pred cC
Q 003053 145 KS 146 (852)
Q Consensus 145 k~ 146 (852)
+.
T Consensus 71 r~ 72 (216)
T KOG0106|consen 71 RG 72 (216)
T ss_pred cc
Confidence 75
No 94
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.97 E-value=1.4e-05 Score=84.37 Aligned_cols=83 Identities=16% Similarity=0.236 Sum_probs=76.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....+.+||||+.+.+|-+++...|..||.|..|.|. +|..+|+++||+||+|.+.+.++.|+. |||..|.|..+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~---~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVP---KDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeee---ccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 3456789999999999999999999999999999888 577888899999999999999999999 999999999999
Q ss_pred EeeccCC
Q 003053 141 IGWGKSV 147 (852)
Q Consensus 141 V~~ak~~ 147 (852)
|.|-+-.
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9987765
No 95
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.94 E-value=3.7e-06 Score=85.31 Aligned_cols=76 Identities=26% Similarity=0.265 Sum_probs=67.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
.-.||||+||...|+|+-|.++|-+-|+|..|.|. +...+..+ ||||.|.+.....-|++-|||..+.+.++.|.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip----~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIP----SGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCC----CCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 45689999999999999999999999999999987 23344555 99999999999999999999999999999886
Q ss_pred e
Q 003053 143 W 143 (852)
Q Consensus 143 ~ 143 (852)
+
T Consensus 83 ~ 83 (267)
T KOG4454|consen 83 L 83 (267)
T ss_pred c
Confidence 5
No 96
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.93 E-value=3.8e-05 Score=87.19 Aligned_cols=79 Identities=25% Similarity=0.324 Sum_probs=65.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEee
Q 003053 64 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 143 (852)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ 143 (852)
..+|||.|||+++++.+|+++|..||.|+...|.. .. ..++..+||||+|.+..+++.|+.+- -..|+|+.|.|.-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~v--r~-~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Vee 363 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQV--RS-PGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEE 363 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEE--ec-cCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEe
Confidence 34599999999999999999999999999988873 11 12444599999999999999999864 6678999999976
Q ss_pred ccC
Q 003053 144 GKS 146 (852)
Q Consensus 144 ak~ 146 (852)
-+.
T Consensus 364 k~~ 366 (419)
T KOG0116|consen 364 KRP 366 (419)
T ss_pred ccc
Confidence 544
No 97
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.92 E-value=1.4e-05 Score=91.73 Aligned_cols=80 Identities=14% Similarity=0.344 Sum_probs=74.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEee
Q 003053 64 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 143 (852)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ 143 (852)
...+|||+||..+++..+.++...||.+....++ ++..+|.++||+|.+|.+......|+..|||+.+++..|.|..
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv---~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLV---KDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheee---cccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 3579999999999999999999999999999888 5888899999999999999999999999999999999999987
Q ss_pred ccC
Q 003053 144 GKS 146 (852)
Q Consensus 144 ak~ 146 (852)
|-.
T Consensus 366 A~~ 368 (500)
T KOG0120|consen 366 AIV 368 (500)
T ss_pred hhc
Confidence 654
No 98
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.88 E-value=1.6e-05 Score=82.32 Aligned_cols=124 Identities=19% Similarity=0.173 Sum_probs=88.7
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
-|||||.|- |+..+||..+.+-. +.+.++......+. ..+...... ............+.|.|.|++.
T Consensus 35 ~gf~fv~fed~rda~Dav~~l~~~~l~~e~--~vve~~r~~~~~~g-~~~~g~r~~--~~~~~~~p~~s~~r~~~~~~~~ 109 (216)
T KOG0106|consen 35 NGFGFVEFEDPRDADDAVHDLDGKELCGER--LVVEHARGKRRGRG-RPRGGDRRS--DSRRYRPPSRTHFRLIVRNLSL 109 (216)
T ss_pred cccceeccCchhhhhcccchhcCceeccee--eeeecccccccccC-CCCCCCccc--hhhccCCcccccceeeeccchh
Confidence 489999994 78888898888873 55555543211110 001100000 0011122234567899999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 75 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 75 ~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
.+..++|...|.++|.+..+.+ ..+++||.|.+.++|.+|+..++|..+.|+.|.+
T Consensus 110 r~~~qdl~d~~~~~g~~~~~~~-----------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 110 RVSWQDLKDHFRPAGEVTYVDA-----------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred hhhHHHHhhhhcccCCCchhhh-----------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 9999999999999999854433 3489999999999999999999999999999999
No 99
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.87 E-value=5.5e-05 Score=83.07 Aligned_cols=78 Identities=23% Similarity=0.485 Sum_probs=71.5
Q ss_pred cceEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 64 TTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 64 ~~tLfVgnLp~-~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
++.|-|.||.. .||.+.|..+|+-||.|..|+|++ ..+.-|.|.|.+...|+-|++.|+|..|.|+.|+|.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~--------nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt 368 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILY--------NKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVT 368 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeee--------cCCcceeeeecchhHHHHHHHHhhcceecCceEEEe
Confidence 57899999976 699999999999999999999995 344689999999999999999999999999999999
Q ss_pred eccCCCC
Q 003053 143 WGKSVAL 149 (852)
Q Consensus 143 ~ak~~~~ 149 (852)
++|+..+
T Consensus 369 ~SKH~~v 375 (492)
T KOG1190|consen 369 LSKHTNV 375 (492)
T ss_pred eccCccc
Confidence 9998775
No 100
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.81 E-value=1.7e-05 Score=90.37 Aligned_cols=72 Identities=28% Similarity=0.403 Sum_probs=65.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
+....+|+|-|||..|++++|..+|+.||.|..|+.- ...+|..||+|.+..+|++|+++||+..|.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t--------~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET--------PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc--------cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4566789999999999999999999999999986543 35679999999999999999999999999999998
No 101
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.59 E-value=0.00031 Score=64.23 Aligned_cols=81 Identities=11% Similarity=0.178 Sum_probs=68.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccC--CCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceec----CeE
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRF--GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY----EYE 138 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~f--G~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~----G~~ 138 (852)
|||-|.|+|...|.++|.+++... |...-+.+. .|..++.+.|||||.|.+.+.|..-...++|..+. .+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLP---iDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kv 78 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLP---IDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKV 78 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEee---eeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcE
Confidence 789999999999999999988643 444444444 68888899999999999999999999999999985 577
Q ss_pred EEEeeccCCC
Q 003053 139 LKIGWGKSVA 148 (852)
Q Consensus 139 l~V~~ak~~~ 148 (852)
+.|.||+-+.
T Consensus 79 c~i~yAriQG 88 (97)
T PF04059_consen 79 CEISYARIQG 88 (97)
T ss_pred EEEehhHhhC
Confidence 8999987543
No 102
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.57 E-value=0.0002 Score=82.44 Aligned_cols=140 Identities=16% Similarity=0.205 Sum_probs=92.6
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCcceEEEcCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGS-FDDGDPQTTNLYVGNLS 73 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~-~~~~~~~~~tLfVgnLp 73 (852)
.||+|+.|. |..-++|..++.+ .+.+..+...........+..-.+...++.. .+.....+..|.+.|+=
T Consensus 331 kg~af~ey~dpsvtd~A~agLnGm~lgd~--~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~V 408 (500)
T KOG0120|consen 331 KGFAFCEYCDPSVTDQAIAGLNGMQLGDK--KLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVV 408 (500)
T ss_pred cceeeeeeeCCcchhhhhcccchhhhcCc--eeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcC
Confidence 478998884 9999999999988 7777776654332222222000011111111 12223344556555542
Q ss_pred C--C-CCH-------HHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEee
Q 003053 74 P--Q-VDE-------NFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 143 (852)
Q Consensus 74 ~--~-vte-------~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ 143 (852)
. + .++ ++++.-+++||.|.+|.|.+|..+.....+-|.-||+|.+.+++++|+.+|+|..+.|+.+...|
T Consensus 409 t~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 409 TPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASY 488 (500)
T ss_pred CHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEe
Confidence 1 0 011 34666778999999999987744555556668889999999999999999999999999998877
No 103
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.44 E-value=0.00011 Score=75.06 Aligned_cols=64 Identities=23% Similarity=0.391 Sum_probs=55.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCcee
Q 003053 64 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV 134 (852)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l 134 (852)
..||||.||.+++||++|+.+|+.|-....++|.. ...-..+||.|.+.+.|..||..|+|..|
T Consensus 210 cstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-------~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-------RGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-------CCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 35799999999999999999999998877777762 12336899999999999999999999887
No 104
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.39 E-value=0.00058 Score=60.02 Aligned_cols=68 Identities=24% Similarity=0.363 Sum_probs=48.9
Q ss_pred ceEEEcCCCCCCCHHH----HHHHhccCCC-eeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 65 TNLYVGNLSPQVDENF----LLRTFGRFGP-IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~----L~~~F~~fG~-I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
+.|||.|||.+.+... |++++..+|. |..| +.+.|+|.|.+.+.|.+|...|+|..+.|..|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI 69 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKI 69 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------------eCCEEEEEeCCHHHHHHHHHhhcccccccceE
Confidence 5799999999988754 7788888874 4433 34889999999999999999999999999999
Q ss_pred EEeecc
Q 003053 140 KIGWGK 145 (852)
Q Consensus 140 ~V~~ak 145 (852)
.|.|..
T Consensus 70 ~v~~~~ 75 (90)
T PF11608_consen 70 SVSFSP 75 (90)
T ss_dssp EEESS-
T ss_pred EEEEcC
Confidence 999874
No 105
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.35 E-value=0.00027 Score=77.15 Aligned_cols=85 Identities=19% Similarity=0.217 Sum_probs=75.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCc
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIAS--------VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 132 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~--------vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~ 132 (852)
....-+|||-+|+..+++++|.++|.++|.|.. |.|. +|.+|+..|+-|.|+|.+...|+.|+..++++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y---~dkeT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIY---TDKETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhcc---ccccccCcCCceeeeecChhhhhhhhhhhccc
Confidence 456678999999999999999999999998863 2333 68899999999999999999999999999999
Q ss_pred eecCeEEEEeeccCCC
Q 003053 133 VVYEYELKIGWGKSVA 148 (852)
Q Consensus 133 ~l~G~~l~V~~ak~~~ 148 (852)
.+.|..|+|..+...+
T Consensus 140 df~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 140 DFCGNTIKVSLAERRT 155 (351)
T ss_pred cccCCCchhhhhhhcc
Confidence 9999999998887654
No 106
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.10 E-value=0.0011 Score=79.46 Aligned_cols=82 Identities=26% Similarity=0.400 Sum_probs=71.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecC--eEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE--YEL 139 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G--~~l 139 (852)
..++.+|||+|.+.+....|...|..||.|..|.+- +...|++|.|.+...|+.|+..|-|..|+| ++|
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~---------hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~ 523 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR---------HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRL 523 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecc---------cCCcceeeecccCccchhhHHHHhcCcCCCCCccc
Confidence 356789999999999999999999999999887664 455799999999999999999999999986 779
Q ss_pred EEeeccCCCCCCC
Q 003053 140 KIGWGKSVALPSQ 152 (852)
Q Consensus 140 ~V~~ak~~~~p~~ 152 (852)
+|.|+.....+++
T Consensus 524 rvdla~~~~~~Pq 536 (975)
T KOG0112|consen 524 RVDLASPPGATPQ 536 (975)
T ss_pred ccccccCCCCChh
Confidence 9999987665433
No 107
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.09 E-value=0.0012 Score=71.03 Aligned_cols=80 Identities=21% Similarity=0.437 Sum_probs=61.9
Q ss_pred eEEEcCCCCCCCHHH----H--HHHhccCCCeeEEEEeccCCccccCCcccEE-EEEECCHHHHHHHHHHhCCceecCeE
Q 003053 66 NLYVGNLSPQVDENF----L--LRTFGRFGPIASVKIMWPRTEEERRRQRNCG-FVAFMNRADGQAAKDEMQGVVVYEYE 138 (852)
Q Consensus 66 tLfVgnLp~~vte~~----L--~~~F~~fG~I~~vki~~pr~d~~tg~~rg~g-FV~F~~~~~A~~Ai~~lnG~~l~G~~ 138 (852)
-+||-+|++.|..++ | .++|++||.|..|.|-. ++......+..+| ||+|.+.++|.+||.+.+|..++|+.
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNk-kt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNK-KTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecc-cccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 489999999887765 2 47999999999987763 1111111112243 99999999999999999999999999
Q ss_pred EEEeeccC
Q 003053 139 LKIGWGKS 146 (852)
Q Consensus 139 l~V~~ak~ 146 (852)
|+..|+..
T Consensus 195 lkatYGTT 202 (480)
T COG5175 195 LKATYGTT 202 (480)
T ss_pred EeeecCch
Confidence 99999864
No 108
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.06 E-value=0.0007 Score=73.90 Aligned_cols=82 Identities=22% Similarity=0.289 Sum_probs=73.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
..+-++|++|++.+++++|+..|..+|.|..+++. ++..++..+|||||.|.....+..|+.. +...+.|+++.|.
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~---~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLP---TDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccC---CCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 34445599999999999999999999999999998 5788999999999999999999999887 8899999999999
Q ss_pred eccCCC
Q 003053 143 WGKSVA 148 (852)
Q Consensus 143 ~ak~~~ 148 (852)
++.+.+
T Consensus 260 ~~~~~~ 265 (285)
T KOG4210|consen 260 EDEPRP 265 (285)
T ss_pred cCCCCc
Confidence 887653
No 109
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.97 E-value=0.005 Score=68.12 Aligned_cols=128 Identities=19% Similarity=0.206 Sum_probs=91.2
Q ss_pred hHHhhhcceeccCCCCcEEEEeccCCCCC--CC----CCCCCCCCCCC----CCCCCC--CCCCCCcceEEEcCCCCCCC
Q 003053 10 SFFNAWHVIYVSNIDGPVFLWLNLFQPSS--RF----DELPDDFDPSG----KLPGSF--DDGDPQTTNLYVGNLSPQVD 77 (852)
Q Consensus 10 ~A~~~m~g~~ls~~~~pi~~~~~~~~~~~--r~----~~~p~~~~~~~----~~~~~~--~~~~~~~~tLfVgnLp~~vt 77 (852)
.|++.++|..+.++ ++++.+..-...+ ++ ..+...+.... ..|++. ...-|++.+|.+.|+|+.++
T Consensus 350 LA~~hL~g~~l~gk--~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svs 427 (492)
T KOG1190|consen 350 LAMEHLEGHKLYGK--KLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVS 427 (492)
T ss_pred HHHHHhhcceecCc--eEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccc
Confidence 48999999999998 8888775432111 11 11111111111 112332 23446778999999999999
Q ss_pred HHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCe-EEEEeeccC
Q 003053 78 ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY-ELKIGWGKS 146 (852)
Q Consensus 78 e~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~-~l~V~~ak~ 146 (852)
|++|+.+|..-|...+..... ++.+.++.+.+.+.++|-.|+-.|+...+++. -|+|+|+|.
T Consensus 428 ee~lk~~f~~~g~~vkafkff-------~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 428 EEDLKNLFQEPGGQVKAFKFF-------QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred hhHHHHhhhcCCceEEeeeec-------CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 999999999888765554432 35668999999999999999999999999854 899999985
No 110
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.94 E-value=0.00044 Score=78.93 Aligned_cols=80 Identities=15% Similarity=0.277 Sum_probs=73.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
.....|+|+-.|+..+++.+|.++|+.+|+|..|.|+ +|..+++++|.|||+|.+......|| +|.|..+.|.+|.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI---~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~ 251 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRII---GDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVI 251 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEee---ccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeE
Confidence 3456789999999999999999999999999999999 58889999999999999999999998 6999999999999
Q ss_pred Eeec
Q 003053 141 IGWG 144 (852)
Q Consensus 141 V~~a 144 (852)
|...
T Consensus 252 vq~s 255 (549)
T KOG0147|consen 252 VQLS 255 (549)
T ss_pred eccc
Confidence 9654
No 111
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.0059 Score=69.62 Aligned_cols=63 Identities=22% Similarity=0.287 Sum_probs=57.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhc-cCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHH
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFG-RFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDE 128 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~-~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ 128 (852)
...|||||+||.-++-++|..+|. -||.|..|-|= +|++-+..+|-|=|+|.+..+--+||.+
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGID---tD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGID---TDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEec---cCcccCCCCCcceeeecccHHHHHHHhh
Confidence 467999999999999999999998 89999999987 6878889999999999999999999875
No 112
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.59 E-value=0.0039 Score=58.00 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=39.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCc
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 132 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~ 132 (852)
+-|+|.+++..++-++|+.+|+.||.|..|.+. ..-.-|||-|.+.+.|+.|+..+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~---------~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFS---------RGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE-----------TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEec---------CCCCEEEEEECCcchHHHHHHHHHhc
Confidence 578999999999999999999999999999887 24468999999999999998876543
No 113
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=96.58 E-value=0.0096 Score=68.36 Aligned_cols=45 Identities=13% Similarity=0.301 Sum_probs=21.8
Q ss_pred ccchhhhh--------hhhhhhhccCCCCCCCchhhHHHHHhhhHHHHHHHHH
Q 003053 376 IPTKVARL--------MLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFND 420 (852)
Q Consensus 376 ~~~KL~~L--------YLinDIL~ns~~~~~na~~yr~~fe~~Lp~if~~l~~ 420 (852)
-.+|+++| |..--|++.-...+.....|+..+-...-.|.+.+..
T Consensus 205 ~~~~~~~ll~~we~~~yf~ds~~~ql~~~~~~~~~~~~~~~~~y~~~~~~~~~ 257 (757)
T KOG4368|consen 205 KQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQATLINEYSSVVQPVQL 257 (757)
T ss_pred HHHHHHHHHHHHhhcCchhHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHHH
Confidence 34555555 4444455444334444555655554444444444433
No 114
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.56 E-value=0.0021 Score=71.50 Aligned_cols=77 Identities=18% Similarity=0.328 Sum_probs=61.5
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEecc---CCccccCCc-------ccEEEEEECCHHHHHHHHH
Q 003053 58 DDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWP---RTEEERRRQ-------RNCGFVAFMNRADGQAAKD 127 (852)
Q Consensus 58 ~~~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~p---r~d~~tg~~-------rg~gFV~F~~~~~A~~Ai~ 127 (852)
+....++.+|.+.|||.+-.-+.|.++|+.+|.|+.|+|..| ..+...... +-||||+|...+.|.+|.+
T Consensus 225 ~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 225 DEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 334457889999999999888999999999999999999977 222222222 5699999999999999999
Q ss_pred HhCCcee
Q 003053 128 EMQGVVV 134 (852)
Q Consensus 128 ~lnG~~l 134 (852)
.||...-
T Consensus 305 ~~~~e~~ 311 (484)
T KOG1855|consen 305 LLNPEQN 311 (484)
T ss_pred hhchhhh
Confidence 8865443
No 115
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.29 E-value=0.00093 Score=79.99 Aligned_cols=100 Identities=24% Similarity=0.360 Sum_probs=82.5
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 60 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
....+.+||+|||...+++.+|+..|..+|.|..|.|-.|+ -+....||||.|.+...+-.|+-.+.|..|....+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~----~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~ 443 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH----IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTH 443 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC----CCcccchhhhhhhccccCcccchhhcCCccccCcc
Confidence 34567899999999999999999999999999999998654 23445799999999999999999999999987788
Q ss_pred EEeeccCCCCCCCCCCCCCCCCcc
Q 003053 140 KIGWGKSVALPSQALPAPPPGQMA 163 (852)
Q Consensus 140 ~V~~ak~~~~p~~~~~~~pp~~~~ 163 (852)
++.++.+...+.+.....+++.|-
T Consensus 444 r~glG~~kst~ttr~~sgglg~w~ 467 (975)
T KOG0112|consen 444 RIGLGQPKSTPTTRLQSGGLGPWS 467 (975)
T ss_pred cccccccccccceeeccCCCCCCC
Confidence 888887655566666666666653
No 116
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.20 E-value=0.018 Score=63.21 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=64.8
Q ss_pred cceEEEcCCC--CCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceec-C-eEE
Q 003053 64 TTNLYVGNLS--PQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-E-YEL 139 (852)
Q Consensus 64 ~~tLfVgnLp--~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~-G-~~l 139 (852)
+..|.+.=|. ..+|-+.|..+....|+|..|.|+. ++.--|.|+|++.+.|++|..+|||..|+ | +.|
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk--------kngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTL 191 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK--------KNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTL 191 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe--------ccceeeEEeechhHHHHHHHhhcccccccccceeE
Confidence 4445555444 4789999999999999999999983 34457999999999999999999999986 4 799
Q ss_pred EEeeccCCCC
Q 003053 140 KIGWGKSVAL 149 (852)
Q Consensus 140 ~V~~ak~~~~ 149 (852)
+|.|||+-.+
T Consensus 192 KIeyAkP~rl 201 (494)
T KOG1456|consen 192 KIEYAKPTRL 201 (494)
T ss_pred EEEecCccee
Confidence 9999998653
No 117
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.20 E-value=0.015 Score=66.10 Aligned_cols=76 Identities=16% Similarity=0.164 Sum_probs=63.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
...-|-+.+||+++|+++|..+|+.++ |..+.+. ..+|+..|-|||+|.+.++++.|++ .+-..+..+.|.|-
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~-----r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP-----RRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe-----ccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 344577889999999999999999995 6776655 3568999999999999999999997 57777888889985
Q ss_pred ecc
Q 003053 143 WGK 145 (852)
Q Consensus 143 ~ak 145 (852)
-+.
T Consensus 82 ~~~ 84 (510)
T KOG4211|consen 82 TAG 84 (510)
T ss_pred ccC
Confidence 443
No 118
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.08 E-value=0.041 Score=60.49 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=71.5
Q ss_pred CCCCcceEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeE
Q 003053 60 GDPQTTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 138 (852)
Q Consensus 60 ~~~~~~tLfVgnLp~-~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~ 138 (852)
+...++.+-|-+|.. .++-+.|..+|..||.|..|++|. ...|.|.|++.+..+.++|+..||+..+.|.+
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmk--------Tk~gtamVemgd~~aver~v~hLnn~~lfG~k 354 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMK--------TKPGTAMVEMGDAYAVERAVTHLNNIPLFGGK 354 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEee--------cccceeEEEcCcHHHHHHHHHHhccCccccce
Confidence 445678899999987 577788999999999999999994 23488999999999999999999999999999
Q ss_pred EEEeeccCCCC
Q 003053 139 LKIGWGKSVAL 149 (852)
Q Consensus 139 l~V~~ak~~~~ 149 (852)
|.|.+++..-+
T Consensus 355 l~v~~SkQ~~v 365 (494)
T KOG1456|consen 355 LNVCVSKQNFV 365 (494)
T ss_pred EEEeecccccc
Confidence 99999886544
No 119
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=96.07 E-value=0.056 Score=63.78 Aligned_cols=25 Identities=16% Similarity=0.028 Sum_probs=18.9
Q ss_pred hHHHHhhcCChHHHHHHHHHc-Cccc
Q 003053 511 AAIKELMNLPLSELERRCRHN-GLSL 535 (852)
Q Consensus 511 ~~~~~~~~~~~~~l~~~c~~~-gl~~ 535 (852)
+.++.|.-.+.+-|..+-.+. |+..
T Consensus 549 rvWedW~ifpe~~l~~l~~~Flg~~~ 574 (877)
T KOG0151|consen 549 RVWEDWAIFPEDFLIGLQNTFLGLNN 574 (877)
T ss_pred HHHHHHHhCcHHHHHHHHHHHhcCCC
Confidence 578899999999999876654 5443
No 120
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=95.93 E-value=0.016 Score=60.57 Aligned_cols=95 Identities=22% Similarity=0.193 Sum_probs=63.9
Q ss_pred CcceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCcceEEEcCC
Q 003053 1 MRSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPD-DFDPSGKLPGSFDDGDPQTTNLYVGNL 72 (852)
Q Consensus 1 ~r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~-~~~~~~~~~~~~~~~~~~~~tLfVgnL 72 (852)
+||||||.|. |+..|+|..+.++ ++.+.........+...... ...................++++++++
T Consensus 156 ~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (306)
T COG0724 156 SRGFAFVEFESEESAEKAIEELNGKELEGR--PLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNL 233 (306)
T ss_pred cCceEEEEecCHHHHHHHHHHcCCCeECCc--eeEeeccccccccccccccccchhhhccccccccccccccceeecccc
Confidence 4899999994 9999999999999 88888865311111111000 000000001112223456788999999
Q ss_pred CCCCCHHHHHHHhccCCCeeEEEEe
Q 003053 73 SPQVDENFLLRTFGRFGPIASVKIM 97 (852)
Q Consensus 73 p~~vte~~L~~~F~~fG~I~~vki~ 97 (852)
+..++...+...|..+|.+..+.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 234 PLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred ccccchhHHHHhccccccceeeecc
Confidence 9999999999999999999777665
No 121
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.59 E-value=0.024 Score=46.06 Aligned_cols=52 Identities=25% Similarity=0.484 Sum_probs=41.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHH
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 126 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai 126 (852)
+.|-|.+.++...+. +...|..||.|..+.+- ....+.+|.|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~---------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP---------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC---------CCCcEEEEEECCHHHHHhhC
Confidence 467788888776655 45588899999998765 35689999999999999985
No 122
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.45 E-value=0.011 Score=64.22 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=62.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCC--eeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFGP--IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG~--I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
-.+|||||-+.+|.++|.+.....|. +..+|+. .++.+|.+||||+|...+....++.++.|--+.|+|..-.|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFF---ENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFF---ENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhh---hcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 46999999999999999998887764 5666766 35677999999999999999999999999999999865433
No 123
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.40 E-value=0.029 Score=64.49 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=58.9
Q ss_pred cceEEEcCCCCCCC------HHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceec-C
Q 003053 64 TTNLYVGNLSPQVD------ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-E 136 (852)
Q Consensus 64 ~~tLfVgnLp~~vt------e~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~-G 136 (852)
-+.|+|.|.|---. ...|..+|+++|+|....+. .++++| .+||.|++|.+..+|+.|+..|||+.|+ .
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P---~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYP---IDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeec---cCccCC-eeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 45789999885211 13477899999988877665 244444 8999999999999999999999999986 5
Q ss_pred eEEEEee
Q 003053 137 YELKIGW 143 (852)
Q Consensus 137 ~~l~V~~ 143 (852)
+.+.|..
T Consensus 134 Htf~v~~ 140 (698)
T KOG2314|consen 134 HTFFVRL 140 (698)
T ss_pred ceEEeeh
Confidence 6676653
No 124
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.28 E-value=0.036 Score=63.48 Aligned_cols=76 Identities=25% Similarity=0.465 Sum_probs=55.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCC--ccc---EEEEEECCHHHHHHHHHHhCCceecCe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRR--QRN---CGFVAFMNRADGQAAKDEMQGVVVYEY 137 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~--~rg---~gFV~F~~~~~A~~Ai~~lnG~~l~G~ 137 (852)
-++.||||+||+.++|+.|...|..||. +++-||+.....++ .+| |.|+.|+++.....-+.++.- .-.+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs---~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~~ 333 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGS---VKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGNY 333 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccc---eEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccce
Confidence 3567999999999999999999999996 55678864443332 456 999999998888776665432 22233
Q ss_pred EEEEe
Q 003053 138 ELKIG 142 (852)
Q Consensus 138 ~l~V~ 142 (852)
.++|.
T Consensus 334 yf~vs 338 (520)
T KOG0129|consen 334 YFKVS 338 (520)
T ss_pred EEEEe
Confidence 44453
No 125
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.24 E-value=0.014 Score=61.31 Aligned_cols=75 Identities=15% Similarity=0.303 Sum_probs=60.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCcc------ccCCccc----EEEEEECCHHHHHHHHHHhCCc
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEE------ERRRQRN----CGFVAFMNRADGQAAKDEMQGV 132 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~------~tg~~rg----~gFV~F~~~~~A~~Ai~~lnG~ 132 (852)
.+-.||++|+|+.++..-|+++|+.||.|-.|.+-. -.+. ..|.+.. -|.|+|.+...|.++...|||.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqp-E~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQP-EDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecc-hhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 345799999999999999999999999999998872 2221 0122222 3679999999999999999999
Q ss_pred eecCeE
Q 003053 133 VVYEYE 138 (852)
Q Consensus 133 ~l~G~~ 138 (852)
.|+|+.
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999864
No 126
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.23 E-value=0.052 Score=59.34 Aligned_cols=74 Identities=16% Similarity=0.237 Sum_probs=59.9
Q ss_pred CcceEEEcCCCC----CCC-------HHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCC
Q 003053 63 QTTNLYVGNLSP----QVD-------ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 131 (852)
Q Consensus 63 ~~~tLfVgnLp~----~vt-------e~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG 131 (852)
..++|.+.|+=. ..+ .++|.+-..+||.|.+|.|. ..++.|.+-|.|.+.++|+.||..|+|
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-------d~hPdGvvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-------DRHPDGVVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-------ccCCCceeEEEeCChHHHHHHHHHhcC
Confidence 356788888732 333 24667778899999999887 235779999999999999999999999
Q ss_pred ceecCeEEEEee
Q 003053 132 VVVYEYELKIGW 143 (852)
Q Consensus 132 ~~l~G~~l~V~~ 143 (852)
..++|+.|....
T Consensus 337 R~fdgRql~A~i 348 (382)
T KOG1548|consen 337 RWFDGRQLTASI 348 (382)
T ss_pred eeecceEEEEEE
Confidence 999999988754
No 127
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=95.21 E-value=0.024 Score=41.96 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=28.9
Q ss_pred hcCChHHHHHHHHHcCccccCChHHHHHHHHhh
Q 003053 517 MNLPLSELERRCRHNGLSLVGGREMMVARLLSL 549 (852)
Q Consensus 517 ~~~~~~~l~~~c~~~gl~~~~~~~~~~~rl~~~ 549 (852)
..|...||...|+..||...|++.+||+||..+
T Consensus 2 ~~l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~ 34 (35)
T PF02037_consen 2 SKLTVAELKEELKERGLSTSGKKAELIERLKEH 34 (35)
T ss_dssp TTSHHHHHHHHHHHTTS-STSSHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHCCCCCCCCHHHHHHHHHHh
Confidence 456788999999999999999999999999764
No 128
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=95.13 E-value=0.019 Score=62.42 Aligned_cols=7 Identities=0% Similarity=-0.154 Sum_probs=4.9
Q ss_pred cCCCCCC
Q 003053 692 VQPDSGM 698 (852)
Q Consensus 692 ~~~~~~~ 698 (852)
=+|+|.|
T Consensus 207 DHf~GKl 213 (319)
T KOG0796|consen 207 DHFGGKL 213 (319)
T ss_pred HhhcchH
Confidence 5677776
No 129
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.12 E-value=0.052 Score=55.58 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=47.8
Q ss_pred HHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhC--CceecCeEEEEeeccCCCC
Q 003053 78 ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ--GVVVYEYELKIGWGKSVAL 149 (852)
Q Consensus 78 e~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ln--G~~l~G~~l~V~~ak~~~~ 149 (852)
...|+.+|..|+.+.....+ ++-+-..|.|.+.++|.+|+..|+ +..+.|..|+|.|+....+
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L---------~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPL---------KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEE---------TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred HHHHHHHHHhcCCceEEEEc---------CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 47899999999999988877 355678999999999999999999 9999999999999966544
No 130
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.08 E-value=0.082 Score=55.79 Aligned_cols=64 Identities=27% Similarity=0.465 Sum_probs=54.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCc
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 132 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~ 132 (852)
..|||-||+..++-+.|...|+.||+|....++- ...++..+-++|.|...-.|..|...++-.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~v----D~r~k~t~eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKV----DDRGKPTREGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeee----cccccccccchhhhhcchhHHHHHHHhccC
Confidence 4799999999999999999999999998766552 345677788999999999999999887533
No 131
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.86 E-value=0.093 Score=48.42 Aligned_cols=79 Identities=20% Similarity=0.177 Sum_probs=51.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCC-----ccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeE
Q 003053 64 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRT-----EEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 138 (852)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~-----d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~ 138 (852)
.+-|.|-+.|+. .-..+.+.|++||.|.+..-+. +. ....-...++-.|.|.++.+|.+|+. -||..+.|..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~-~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVL-RSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG-----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeeccc-ccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 345778888888 4556778899999988764110 00 00011355799999999999999997 6999999865
Q ss_pred E-EEeecc
Q 003053 139 L-KIGWGK 145 (852)
Q Consensus 139 l-~V~~ak 145 (852)
| -|.|.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4 466653
No 132
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.60 E-value=0.093 Score=61.79 Aligned_cols=75 Identities=16% Similarity=0.230 Sum_probs=64.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCee-EEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEee
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFGPIA-SVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 143 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG~I~-~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ 143 (852)
+.|-+.|+|++|+-++|.++|..|-.+- +|.+.+ .+.|..-|-|.|.|++.++|.+|...|+++.|..+.++|..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~----nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRR----NDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEee----cCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4789999999999999999999997653 455543 45677889999999999999999999999999999998864
No 133
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=94.51 E-value=0.075 Score=60.59 Aligned_cols=77 Identities=12% Similarity=0.137 Sum_probs=59.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEee
Q 003053 64 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 143 (852)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ 143 (852)
...|-+.+||+.+|+++|.++|+-.-.|...-++ .....+++.|-|||.|.+.+.|++|+.. |...|+-+.|.|--
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l---~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILL---PMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceee---eccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 3478899999999999999999977555442222 1345677889999999999999999874 55667778888854
Q ss_pred c
Q 003053 144 G 144 (852)
Q Consensus 144 a 144 (852)
+
T Consensus 179 S 179 (510)
T KOG4211|consen 179 S 179 (510)
T ss_pred h
Confidence 3
No 134
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=94.50 E-value=0.057 Score=39.92 Aligned_cols=33 Identities=36% Similarity=0.534 Sum_probs=29.9
Q ss_pred hcCChHHHHHHHHHcCccccCChHHHHHHHHhh
Q 003053 517 MNLPLSELERRCRHNGLSLVGGREMMVARLLSL 549 (852)
Q Consensus 517 ~~~~~~~l~~~c~~~gl~~~~~~~~~~~rl~~~ 549 (852)
..+...+|...|+..||...|.+..||+||..|
T Consensus 2 ~~l~~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~ 34 (35)
T smart00513 2 AKLKVSELKDELKKRGLSTSGTKAELVDRLLEA 34 (35)
T ss_pred CcCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 457789999999999999999999999999864
No 135
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.36 E-value=0.035 Score=61.82 Aligned_cols=74 Identities=24% Similarity=0.307 Sum_probs=59.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCce-ecCeEEEEeec
Q 003053 66 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV-VYEYELKIGWG 144 (852)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~-l~G~~l~V~~a 144 (852)
.||+|||.+.++..+|..+|+..-.-.+-.++ -..||+||.+.+...|.+|++.++|+. +.|.++.|..+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl---------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL---------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCccee---------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 68999999999999999999854211122222 245899999999999999999999986 78999999876
Q ss_pred cCCC
Q 003053 145 KSVA 148 (852)
Q Consensus 145 k~~~ 148 (852)
-++.
T Consensus 74 v~kk 77 (584)
T KOG2193|consen 74 VPKK 77 (584)
T ss_pred hhHH
Confidence 5543
No 136
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=94.20 E-value=0.46 Score=47.92 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=85.9
Q ss_pred ceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCC---CCCC--CCCCCCcceEEEc
Q 003053 3 SFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKL---PGSF--DDGDPQTTNLYVG 70 (852)
Q Consensus 3 ~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~---~~~~--~~~~~~~~tLfVg 70 (852)
.||||.|- |+.--+|....+- .+++.+.....++.- -...+...+.- .+.. .......-.+.|.
T Consensus 46 pfafVeFEd~RDAeDAiygRdGYdydg~--rLRVEfprggr~s~~--~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVs 121 (241)
T KOG0105|consen 46 PFAFVEFEDPRDAEDAIYGRDGYDYDGC--RLRVEFPRGGRSSSD--RRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVS 121 (241)
T ss_pred CeeEEEecCccchhhhhhcccccccCcc--eEEEEeccCCCcccc--cccccCCCCCCCCCCCcccCCcccccceeEEEe
Confidence 59999993 8888889888887 788888765421110 01111111110 0000 1111223468999
Q ss_pred CCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceec--CeEEEE
Q 003053 71 NLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY--EYELKI 141 (852)
Q Consensus 71 nLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~--G~~l~V 141 (852)
+||+.-+.++|+.+.-+-|.|....+.. -|+|.|+|...++.+-|+..|+...+. |....+
T Consensus 122 GLp~SgSWQDLKDHmReaGdvCfadv~r----------Dg~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yi 184 (241)
T KOG0105|consen 122 GLPPSGSWQDLKDHMREAGDVCFADVQR----------DGVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYI 184 (241)
T ss_pred cCCCCCchHHHHHHHHhhCCeeeeeeec----------ccceeeeeeehhhHHHHHHhhccccccCcCcEeeE
Confidence 9999999999999999999999888872 269999999999999999999887763 444333
No 137
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=93.48 E-value=0.026 Score=60.89 Aligned_cols=15 Identities=7% Similarity=0.084 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHhccc
Q 003053 358 AGEIVEVLTESLTLK 372 (852)
Q Consensus 358 a~eiv~~l~~~l~~~ 372 (852)
..+||+-|.-.+.-.
T Consensus 82 yhevideIyyqVkHv 96 (453)
T KOG2888|consen 82 YHEVIDEIYYQVKHV 96 (453)
T ss_pred HHHHHHHHHHHHhcc
Confidence 567777777666543
No 138
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.43 E-value=0.28 Score=47.65 Aligned_cols=75 Identities=20% Similarity=0.360 Sum_probs=59.8
Q ss_pred CCCCcceEEEcCCCCCCCH-H---HHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceec
Q 003053 60 GDPQTTNLYVGNLSPQVDE-N---FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY 135 (852)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte-~---~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~ 135 (852)
.+|.-.||.|.-|..++.. + .+..-.+.||+|.+|... ++..|.|.|.+..+|-.|+.+++. ...
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----------GrqsavVvF~d~~SAC~Av~Af~s-~~p 150 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----------GRQSAVVVFKDITSACKAVSAFQS-RAP 150 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----------CCceEEEEehhhHHHHHHHHhhcC-CCC
Confidence 3566778999887776654 3 345556799999999876 457899999999999999999876 677
Q ss_pred CeEEEEeecc
Q 003053 136 EYELKIGWGK 145 (852)
Q Consensus 136 G~~l~V~~ak 145 (852)
|..+.+.|-.
T Consensus 151 gtm~qCsWqq 160 (166)
T PF15023_consen 151 GTMFQCSWQQ 160 (166)
T ss_pred CceEEeeccc
Confidence 8899999954
No 139
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.42 E-value=0.1 Score=60.55 Aligned_cols=79 Identities=16% Similarity=0.253 Sum_probs=64.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhcc-CCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCcee---cCe
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGR-FGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV---YEY 137 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~-fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l---~G~ 137 (852)
+.+..|||.||-.-+|.-.|+.++++ .|.|... +| | +-+..|||.|.+.++|...+.+|||..+ +++
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm----D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM----D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH-HH----H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 34567999999999999999999995 5556555 44 4 4567899999999999999999999998 578
Q ss_pred EEEEeeccCCCC
Q 003053 138 ELKIGWGKSVAL 149 (852)
Q Consensus 138 ~l~V~~ak~~~~ 149 (852)
-|.+.|+..-.+
T Consensus 513 ~L~adf~~~del 524 (718)
T KOG2416|consen 513 HLIADFVRADEL 524 (718)
T ss_pred eeEeeecchhHH
Confidence 899999875443
No 140
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.04 E-value=0.42 Score=46.92 Aligned_cols=53 Identities=26% Similarity=0.416 Sum_probs=45.3
Q ss_pred HHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeec
Q 003053 80 FLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 144 (852)
Q Consensus 80 ~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~a 144 (852)
+|.+.|..||.|.-|++.- +.-.|+|.+-..|-+|+. |+|..++|+.|+|..-
T Consensus 52 ~ll~~~~~~GevvLvRfv~-----------~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LK 104 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVG-----------DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLK 104 (146)
T ss_dssp HHHHHHHCCS-ECEEEEET-----------TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-
T ss_pred HHHHHHHhCCceEEEEEeC-----------CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeC
Confidence 6888899999999888872 567999999999999987 9999999999999754
No 141
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.57 E-value=0.29 Score=52.53 Aligned_cols=62 Identities=13% Similarity=0.107 Sum_probs=48.4
Q ss_pred HHHHHHhccCCCeeEEEEeccCCcccc-CCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEee
Q 003053 79 NFLLRTFGRFGPIASVKIMWPRTEEER-RRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 143 (852)
Q Consensus 79 ~~L~~~F~~fG~I~~vki~~pr~d~~t-g~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ 143 (852)
+++....++||.|..|-|.- ++.- -...---||+|...++|.+|+..|||..++|+.++..|
T Consensus 301 de~keEceKyg~V~~viife---ip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFE---IPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHhhcceeeEEEEe---cCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 46777889999999997763 1111 11123579999999999999999999999999988766
No 142
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=92.44 E-value=0.12 Score=60.19 Aligned_cols=57 Identities=23% Similarity=0.067 Sum_probs=49.7
Q ss_pred ccCCCCcchhhHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccccccCCCCCccceeeeee
Q 003053 203 VIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLY 262 (852)
Q Consensus 203 v~~P~d~~~~~~Id~~a~~V~~~G~~FE~~~~~~~~~np~f~FL~d~~~~~h~YYrwkl~ 262 (852)
-.+|..+.+..+|+..|+||+++|..||+-+..+ ++-+|.|+- +..+|+.||-++.-
T Consensus 418 ~~ip~~pd~~p~v~~~aE~Vaq~Gl~~e~S~~a~--~d~~~~f~~-pk~~y~~yy~~kk~ 474 (878)
T KOG1847|consen 418 QEIPELPDGDPGVIIRAEDVAQEGLAVEDSKHAF--GDVLPDFSA-PKEKYKMYYDKKKV 474 (878)
T ss_pred hhCCCCCCCchHHHHHHHHHHhhchhhhhhhhhh--cccChhhcc-chhhhhhhhhhhhh
Confidence 3556678899999999999999999999998884 688999995 89999999999874
No 143
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=92.39 E-value=0.61 Score=51.75 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=61.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHhccCCC-eeE--EEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 64 TTNLYVGNLSPQVDENFLLRTFGRFGP-IAS--VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~fG~-I~~--vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
.-.|-+.+||...+-++|..+|+.|-. |.. |.++. ...|+..|-|||.|.+.++|..|....+.+...++.|.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~----N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiE 355 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL----NGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIE 355 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE----cCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEE
Confidence 456889999999999999999998865 333 55552 45678889999999999999999988888877788888
Q ss_pred Ee
Q 003053 141 IG 142 (852)
Q Consensus 141 V~ 142 (852)
|-
T Consensus 356 vf 357 (508)
T KOG1365|consen 356 VF 357 (508)
T ss_pred Ee
Confidence 73
No 144
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.37 E-value=0.16 Score=61.51 Aligned_cols=79 Identities=10% Similarity=0.077 Sum_probs=69.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEee
Q 003053 64 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 143 (852)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ 143 (852)
...|||.|+|+.-|.+.|+.+|..+|.++++.++ ....|+.+|-+||.|.+..+|.+++..+++..+.-+.+.|..
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~v----t~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLV----TVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchh----hhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 4579999999999999999999999999999876 345688999999999999999999998888888877788876
Q ss_pred ccC
Q 003053 144 GKS 146 (852)
Q Consensus 144 ak~ 146 (852)
+.+
T Consensus 812 snp 814 (881)
T KOG0128|consen 812 SNP 814 (881)
T ss_pred cCC
Confidence 655
No 145
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.89 E-value=0.076 Score=58.14 Aligned_cols=79 Identities=19% Similarity=0.337 Sum_probs=60.6
Q ss_pred ceEEEcCCCCCCCHHHHH---HHhccCCCeeEEEEeccCCcc--ccCCc-ccEEEEEECCHHHHHHHHHHhCCceecCeE
Q 003053 65 TNLYVGNLSPQVDENFLL---RTFGRFGPIASVKIMWPRTEE--ERRRQ-RNCGFVAFMNRADGQAAKDEMQGVVVYEYE 138 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~---~~F~~fG~I~~vki~~pr~d~--~tg~~-rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~ 138 (852)
.-+||-+|+..+..+.+. +.|++||.|.+|.+.. +. ..+.. ..-++|+|...++|..||...+|+.++|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~---~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNK---DPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecC---CcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 347888999877665543 5899999999998763 22 11111 124799999999999999999999999999
Q ss_pred EEEeeccC
Q 003053 139 LKIGWGKS 146 (852)
Q Consensus 139 l~V~~ak~ 146 (852)
|+..++..
T Consensus 155 lka~~gtt 162 (327)
T KOG2068|consen 155 LKASLGTT 162 (327)
T ss_pred hHHhhCCC
Confidence 88887754
No 146
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=91.38 E-value=1.5 Score=41.17 Aligned_cols=99 Identities=13% Similarity=0.222 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCCCchhhHHHHHhhhHHHHHHHH
Q 003053 340 ERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFN 419 (852)
Q Consensus 340 tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~yr~~fe~~Lp~if~~l~ 419 (852)
....|.+...-+-+....+.+++..|.+.|... ....++--|+|+-=++.||. ..|...|....-. ...+.
T Consensus 17 ~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~--~~~~~lkaL~lLe~lvkN~g------~~f~~~i~~~~~~-~~l~~ 87 (115)
T cd00197 17 DWPLIMEICDLINETNVGPKEAVDAIKKRINNK--NPHVVLKALTLLEYCVKNCG------ERFHQEVASNDFA-VELLK 87 (115)
T ss_pred CHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHcc------HHHHHHHHHhHHH-HHHHH
Confidence 445555555555555567899999999999654 56788999999999999996 2355555444322 11222
Q ss_pred HHHhhhccccchHHHHHHHHHHHHHhcc
Q 003053 420 DLYRSITGRITAEALKERVLKVLQVWSD 447 (852)
Q Consensus 420 ~~~~~~~~r~~a~~~k~kv~~vL~iWe~ 447 (852)
..|....|.......++++..|+..|.+
T Consensus 88 ~~~~~~~~~~~~~~Vr~k~~~l~~~w~~ 115 (115)
T cd00197 88 FDKSKLLGDDVSTNVREKAIELVQLWAS 115 (115)
T ss_pred hhccccccCCCChHHHHHHHHHHHHHhC
Confidence 2233445666678999999999999964
No 147
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=91.34 E-value=0.089 Score=55.58 Aligned_cols=61 Identities=11% Similarity=0.219 Sum_probs=49.5
Q ss_pred HHHHHhc-cCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeec
Q 003053 80 FLLRTFG-RFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 144 (852)
Q Consensus 80 ~L~~~F~-~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~a 144 (852)
+|...|+ +||.|..++|- +...-.-.|-.+|.|...++|++|+..|||.-+.|++|...+.
T Consensus 84 d~f~E~~~kygEiee~~Vc----~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVC----DNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHhhhhhhhhhh----cccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 3444444 89999998776 3333345688999999999999999999999999999999875
No 148
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.44 E-value=0.32 Score=58.71 Aligned_cols=78 Identities=19% Similarity=0.266 Sum_probs=66.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCcee--cCeEEE
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV--YEYELK 140 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l--~G~~l~ 140 (852)
-..+.++.|.+-+.+...|..+|+.||.|.++..+ +.-..+.|+|.+.+.|-.|.++++|+++ -|-+.+
T Consensus 297 lqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtl---------r~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~ 367 (1007)
T KOG4574|consen 297 LQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTL---------RDLNMALVSFSSVESAILALDALQGKEVSVTGAPSR 367 (1007)
T ss_pred CcchhhhhcccccchHHHHHHHHHhhcchhhheec---------ccccchhhhhHHHHHHHHhhhhhcCCcccccCCcee
Confidence 33456777777888999999999999999998776 3457899999999999999999999986 488899
Q ss_pred EeeccCCCC
Q 003053 141 IGWGKSVAL 149 (852)
Q Consensus 141 V~~ak~~~~ 149 (852)
|.+|+..++
T Consensus 368 V~~ak~~~~ 376 (1007)
T KOG4574|consen 368 VSFAKTLPM 376 (1007)
T ss_pred EEecccccc
Confidence 999987654
No 149
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=88.59 E-value=0.2 Score=59.98 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=8.6
Q ss_pred cccCCCccccCCCCC
Q 003053 655 RSSRGLGLSYSSSGS 669 (852)
Q Consensus 655 ~~~~~~~~~~~~~~~ 669 (852)
.++.|.|++.+-+.+
T Consensus 252 ~s~~~~g~~lp~~r~ 266 (1194)
T KOG4246|consen 252 SSNPGYGVSLPPGRD 266 (1194)
T ss_pred hcCCCcCCCCCCCCC
Confidence 345566777666443
No 150
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=88.32 E-value=1.4 Score=39.18 Aligned_cols=57 Identities=18% Similarity=0.353 Sum_probs=41.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhC
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ 130 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ln 130 (852)
....+|--..|......+|.++|+.||.|. |..+ +-.-|||...+++.|..|+..+.
T Consensus 7 ~RdHVFhltFPkeWK~~DI~qlFspfG~I~-VsWi----------~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 7 SRDHVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWI----------NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp SGCCEEEEE--TT--HHHHHHHCCCCCCEE-EEEE----------CTTEEEEEECCCHHHHHHHHHHT
T ss_pred CcceEEEEeCchHhhhhhHHHHhccCCcEE-EEEE----------cCCcEEEEeecHHHHHHHHHHhc
Confidence 333444444999999999999999999853 4444 33679999999999999998875
No 151
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=87.63 E-value=0.69 Score=50.66 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=6.4
Q ss_pred HHhhcCChHHHHHHHH
Q 003053 514 KELMNLPLSELERRCR 529 (852)
Q Consensus 514 ~~~~~~~~~~l~~~c~ 529 (852)
.++...+..+++.+|.
T Consensus 208 f~~Fd~~k~eid~ic~ 223 (367)
T KOG0835|consen 208 FKAFDTTKREIDEICY 223 (367)
T ss_pred HHHcCCcHHHHHHHHH
Confidence 3333334444444443
No 152
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=87.61 E-value=0.058 Score=65.02 Aligned_cols=69 Identities=26% Similarity=0.390 Sum_probs=58.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceec
Q 003053 64 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY 135 (852)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~ 135 (852)
.+++||.||+..+.+.+|...|+.+|.+..+.|. ....+++-+|+|||.|...+++.+|+....+..++
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~---~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIV---IHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHH---HHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 3579999999999999999999999998888765 24557788999999999999999999865555444
No 153
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=87.57 E-value=0.4 Score=54.58 Aligned_cols=75 Identities=20% Similarity=0.302 Sum_probs=59.0
Q ss_pred cceEEEcCCCCCCC-HHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 64 TTNLYVGNLSPQVD-ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 64 ~~tLfVgnLp~~vt-e~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
.+.|-+--.++..+ -.+|...|.+||.|..|.|-+ +.-.|.|+|.+..+|-.|.. ..|..|+++.|+|-
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~---------~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY---------SSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLF 441 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccC---------chhhheeeeeccccccchhc-cccceecCceeEEE
Confidence 34455555555543 478999999999999998874 24578999999999966653 68999999999999
Q ss_pred eccCCC
Q 003053 143 WGKSVA 148 (852)
Q Consensus 143 ~ak~~~ 148 (852)
|.++.+
T Consensus 442 whnps~ 447 (526)
T KOG2135|consen 442 WHNPSP 447 (526)
T ss_pred EecCCc
Confidence 998754
No 154
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=87.48 E-value=0.33 Score=58.25 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=5.8
Q ss_pred cCCCCcccccccc
Q 003053 593 SGWNGYEEDEKLS 605 (852)
Q Consensus 593 ~~~~~~~~~~~~~ 605 (852)
..||-|-.+...|
T Consensus 197 fkwnaqriq~l~~ 209 (1194)
T KOG4246|consen 197 FKWNAQRIQHLGG 209 (1194)
T ss_pred ccccHHHHHhccc
Confidence 3455444444433
No 155
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.56 E-value=0.21 Score=54.67 Aligned_cols=47 Identities=21% Similarity=0.338 Sum_probs=34.7
Q ss_pred CCCCCCCccccccccCCCcc---cCCCCCCcHHHHHHHHHhh-hhhhhhhhh
Q 003053 672 AGDGPSKADDVDFTIDASIP---VQPDSGMNEEQRQKLRRLE-VSLIEYRES 719 (852)
Q Consensus 672 ~~~~~~~~~~vef~~~~sv~---~~~~~~~~~~~~~k~~~~~-~ai~k~~~~ 719 (852)
.|+. .+-++|||.++.|.- +.++.++..|+|+-+.-|. ++-++.+.+
T Consensus 277 tgds-LqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSVsk~k~r~k 327 (479)
T KOG0415|consen 277 TGDS-LQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVSKVKYRQK 327 (479)
T ss_pred ccch-hheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhhhhhhcccc
Confidence 3444 678899999999987 8899999999988776653 333444444
No 156
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=85.37 E-value=0.45 Score=52.03 Aligned_cols=16 Identities=31% Similarity=0.615 Sum_probs=7.7
Q ss_pred hhhhhhhhh----hhhccCC
Q 003053 379 KVARLMLVS----DVLHNSS 394 (852)
Q Consensus 379 KL~~LYLin----DIL~ns~ 394 (852)
++=..||+. ||+.|+.
T Consensus 32 ~VC~~fLvg~CPHDlF~nTk 51 (319)
T KOG0796|consen 32 DVCKSFLVGFCPHDLFQNTK 51 (319)
T ss_pred hHHHHHHhCCCcHHHhhhhh
Confidence 444455542 5555543
No 157
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=83.17 E-value=0.31 Score=50.39 Aligned_cols=58 Identities=34% Similarity=0.512 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCce
Q 003053 72 LSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV 133 (852)
Q Consensus 72 Lp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~ 133 (852)
|...++++.+...|+.-|++..+++-. +. .|+++.++||++......-.|+...++..
T Consensus 92 ld~r~~~ei~~~v~s~a~p~~~~R~~~---~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 92 LDERVTEEILYEVFSQAGPIEGVRIPT---DN-DGRNRNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred hhhhcchhhheeeecccCCCCCccccc---cc-cCCccCccchhhhhhhcCcHHhhhhcccC
Confidence 666888999999999999999998873 33 38899999999987776666766555443
No 158
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=83.14 E-value=0.6 Score=53.67 Aligned_cols=7 Identities=0% Similarity=0.781 Sum_probs=3.7
Q ss_pred Ccccccc
Q 003053 678 KADDVDF 684 (852)
Q Consensus 678 ~~~~vef 684 (852)
...++||
T Consensus 318 r~eKiey 324 (653)
T KOG2548|consen 318 RKEKIEY 324 (653)
T ss_pred ccccceE
Confidence 3455665
No 159
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=82.75 E-value=1.9 Score=46.76 Aligned_cols=61 Identities=18% Similarity=0.243 Sum_probs=47.1
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeE
Q 003053 67 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 138 (852)
Q Consensus 67 LfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~ 138 (852)
+-|-++++.-. ..|..+|++||.|.+... +.+.++-+|-|.++.+|++|+. .||++|+|..
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~---------~~ngNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVT---------PSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeec---------CCCCceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 44556766544 356778999999887532 2456899999999999999998 6999998854
No 160
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=82.57 E-value=2.7 Score=46.22 Aligned_cols=8 Identities=25% Similarity=0.297 Sum_probs=3.5
Q ss_pred HHHHHHHh
Q 003053 362 VEVLTESL 369 (852)
Q Consensus 362 v~~l~~~l 369 (852)
..+|.+.+
T Consensus 47 gqVLFqRf 54 (367)
T KOG0835|consen 47 GQVLFQRF 54 (367)
T ss_pred HHHHHHHH
Confidence 34444444
No 161
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=81.93 E-value=1.9 Score=46.70 Aligned_cols=16 Identities=19% Similarity=0.642 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHhc
Q 003053 431 AEALKERVLKVLQVWS 446 (852)
Q Consensus 431 a~~~k~kv~~vL~iWe 446 (852)
.++...++..-|.+|.
T Consensus 74 ~e~~~~~~~~~l~~wd 89 (335)
T KOG0113|consen 74 TEKIPHKLERRLKLWD 89 (335)
T ss_pred hhhhHHHHHHHHHhcC
Confidence 3444444555555553
No 162
>smart00361 RRM_1 RNA recognition motif.
Probab=80.59 E-value=0.99 Score=38.45 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=22.7
Q ss_pred CcceEehhh-------hHHhhhcceeccCCCCcEEE
Q 003053 1 MRSFSFFLF-------SFFNAWHVIYVSNIDGPVFL 29 (852)
Q Consensus 1 ~r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~ 29 (852)
.||||||.| .|+..|||.++.++ .|++
T Consensus 36 ~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr--~l~~ 69 (70)
T smart00361 36 KRGNVYITFERSEDAARAIVDLNGRYFDGR--TVKA 69 (70)
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCE--EEEe
Confidence 389999999 49999999999888 5543
No 163
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=80.38 E-value=5.4 Score=47.29 Aligned_cols=103 Identities=20% Similarity=0.371 Sum_probs=83.0
Q ss_pred HHHHHHHHhcc-cCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCCCchhhHHH
Q 003053 328 DEFEDMLRALT-LERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTK 406 (852)
Q Consensus 328 ~~l~~lL~~Lt-~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~yr~~ 406 (852)
..+...|..|| .++.-|-.+..-+-++..+|..||+.|...+... |...||-.+||+--|+-|-..+ |...
T Consensus 7 ~dy~s~ledltfnskp~i~~lt~la~En~~~a~~iv~~iE~hi~kc--pp~~kL~~~y~~dsi~knvg~p------y~~~ 78 (579)
T KOG2071|consen 7 RDYQSSLEDLTFNSKPIINTLTILAEENLPFAKSIVSAIEAHIAKC--PPSQKLPVMYLLDSIVKNVGSP------YTTA 78 (579)
T ss_pred HHHHHHHHHHhcCCcchhHHhhHhhhhcccccHHHHHHHHHHHhhC--CcccccchhhhhHHHHhhcCCc------chhh
Confidence 45666677774 7899999999999999999999999999998554 4678999999999999887532 8889
Q ss_pred HHhhhHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhc
Q 003053 407 FEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWS 446 (852)
Q Consensus 407 fe~~Lp~if~~l~~~~~~~~~r~~a~~~k~kv~~vL~iWe 446 (852)
|...|...|.+ +|... ++-.+.++.+++..|.
T Consensus 79 fs~~l~a~f~~---~~~~v-----d~r~r~~l~~~~~tw~ 110 (579)
T KOG2071|consen 79 FSRNLVATFIC---AFTKV-----DERTRTSLFKLRATWD 110 (579)
T ss_pred hhhhHHHHHHH---HHhhc-----cccccchhHhhHHhhc
Confidence 99888877643 44433 4455779999999998
No 164
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=79.77 E-value=1 Score=51.85 Aligned_cols=11 Identities=9% Similarity=0.214 Sum_probs=5.1
Q ss_pred cCccccchhHH
Q 003053 494 CDLSKTNQDTA 504 (852)
Q Consensus 494 ~dg~~~~~~~~ 504 (852)
+|...||..++
T Consensus 202 ~D~~~ld~eq~ 212 (653)
T KOG2548|consen 202 FDSNDLDDEQM 212 (653)
T ss_pred cccccCCHHHH
Confidence 34444544443
No 165
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=79.19 E-value=7.2 Score=32.90 Aligned_cols=54 Identities=7% Similarity=0.148 Sum_probs=41.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccC---CCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHh
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRF---GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEM 129 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~f---G~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~l 129 (852)
..|+|.++. +++.++++.+|..| .....|.++ | -..+-|.|.+...|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWI----d------DtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWI----D------DTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEe----c------CCcEEEEECCHHHHHHHHHcC
Confidence 478999985 68888999999988 124566666 2 145789999999999999765
No 166
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=78.74 E-value=1.4 Score=43.34 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=29.1
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.|. |++.|++..+.++ +|+|.++...+
T Consensus 76 kGfaFV~F~~~e~A~~Al~~lng~~i~Gr--~l~V~~a~~~~ 115 (144)
T PLN03134 76 RGFGFVNFNDEGAATAAISEMDGKELNGR--HIRVNPANDRP 115 (144)
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCE--EEEEEeCCcCC
Confidence 799999994 9999999999999 99999887643
No 167
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=78.38 E-value=3.5 Score=48.21 Aligned_cols=48 Identities=8% Similarity=0.032 Sum_probs=40.4
Q ss_pred CccccCCcccEEEEEECCHHHHHHHHHHhCCceec----CeEEEEeeccCCC
Q 003053 101 TEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY----EYELKIGWGKSVA 148 (852)
Q Consensus 101 ~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~----G~~l~V~~ak~~~ 148 (852)
.|-.+..+.|||||.|.+.+++..+.+++||+.+. .+.+.|.||+-+.
T Consensus 423 iDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQG 474 (549)
T KOG4660|consen 423 IDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQG 474 (549)
T ss_pred cccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhc
Confidence 56667778899999999999999999999999863 4667888887654
No 168
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=77.99 E-value=1.6 Score=52.00 Aligned_cols=77 Identities=14% Similarity=0.097 Sum_probs=61.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeE-EEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIAS-VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~-vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
+.+..|||-.||..+++..+..+|..--.|++ |.|.+ .-+++..+.|||.|...+++..|...-.-+.++.+-|+
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~----~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ir 507 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTR----LPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIR 507 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEecc----CCcccccchhhheeccccccchhhhcccccccCceEEE
Confidence 34568999999999999999999987777766 55553 34567789999999999999888776666667777888
Q ss_pred Ee
Q 003053 141 IG 142 (852)
Q Consensus 141 V~ 142 (852)
|.
T Consensus 508 v~ 509 (944)
T KOG4307|consen 508 VD 509 (944)
T ss_pred ee
Confidence 85
No 169
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=77.72 E-value=1.7 Score=45.10 Aligned_cols=33 Identities=15% Similarity=0.137 Sum_probs=30.0
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..|++..|.++ .|++.++.+.+
T Consensus 52 RgFgFVefe~aEDAaaAiDNMnesEL~Gr--tirVN~AkP~k 91 (298)
T KOG0111|consen 52 RGFGFVEFEEAEDAAAAIDNMNESELFGR--TIRVNLAKPEK 91 (298)
T ss_pred cceeEEEeeccchhHHHhhcCchhhhcce--eEEEeecCCcc
Confidence 89999999 49999999999999 99999988753
No 170
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=77.69 E-value=2.8 Score=42.42 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=57.8
Q ss_pred cceEEEcCCCCCCCH-----HHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCe-
Q 003053 64 TTNLYVGNLSPQVDE-----NFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY- 137 (852)
Q Consensus 64 ~~tLfVgnLp~~vte-----~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~- 137 (852)
.+++.+.++...|-. .....+|-+|-......++ ++.++--|.|.+.+.|..|...+++..+.|.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l---------rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~ 80 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL---------RSFRRVRINFSNPEAAADARIKLHSTSFNGKN 80 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH---------HhhceeEEeccChhHHHHHHHHhhhcccCCCc
Confidence 356788888775433 2345667777766655555 3556667899999999999999999999988
Q ss_pred EEEEeeccCCCCC
Q 003053 138 ELKIGWGKSVALP 150 (852)
Q Consensus 138 ~l~V~~ak~~~~p 150 (852)
.|+.-|+.+....
T Consensus 81 ~~k~yfaQ~~~~~ 93 (193)
T KOG4019|consen 81 ELKLYFAQPGHPE 93 (193)
T ss_pred eEEEEEccCCCcc
Confidence 8999998876543
No 171
>KOG0965 consensus Predicted RNA-binding protein, contains SWAP and G-patch domains [General function prediction only]
Probab=76.70 E-value=0.87 Score=54.44 Aligned_cols=59 Identities=19% Similarity=0.100 Sum_probs=53.8
Q ss_pred CCcchhhHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccccccCCCCCccceeeeeeecc
Q 003053 207 EDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFA 265 (852)
Q Consensus 207 ~d~~~~~~Id~~a~~V~~~G~~FE~~~~~~~~~np~f~FL~d~~~~~h~YYrwkl~~~~ 265 (852)
.-+..+.+|+.++.++.-.+..++-..|+--+.||.|.||-|..+-++.||+-++-++.
T Consensus 528 ~~a~~rvv~~i~~~~~~~~~~~L~~~~~tl~k~~pa~~Flsd~ns~e~~yyk~k~aeI~ 586 (988)
T KOG0965|consen 528 QRADHRVVGTIDQLVKRVIEGSLSPKERTLLKEDPAYWFLSDENSLEYKYYKLKLAEIQ 586 (988)
T ss_pred cCCCceeeeehhhhHHhhccccccHHHHHHhhhchhhhhhcchhhhHHHHhccccHHHH
Confidence 44567889999999999999999999999999999999999999999999999997655
No 172
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=75.83 E-value=3.3 Score=49.38 Aligned_cols=70 Identities=21% Similarity=0.314 Sum_probs=61.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
-+..-++||||+...+..+.+..+...+|-|.+++.. -|||..|..+..+.+|+..++-..++|..+.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~------------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD------------KFGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh------------hhcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 3456689999999999999999999999999887766 2999999999999999999998889888776
Q ss_pred Ee
Q 003053 141 IG 142 (852)
Q Consensus 141 V~ 142 (852)
+.
T Consensus 105 ~~ 106 (668)
T KOG2253|consen 105 EN 106 (668)
T ss_pred cc
Confidence 64
No 173
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=74.37 E-value=8.9 Score=39.12 Aligned_cols=85 Identities=13% Similarity=0.210 Sum_probs=51.9
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhcc-CCCe---eEEEEeccCCccccC-CcccEEEEEECCHHHHHHHHHHhCCceec--
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGR-FGPI---ASVKIMWPRTEEERR-RQRNCGFVAFMNRADGQAAKDEMQGVVVY-- 135 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~-fG~I---~~vki~~pr~d~~tg-~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~-- 135 (852)
..+.|.|.+||+++||+++.+.++. ++.- ..+.-..+. ...+ ..-.-|||.|.+.+++..-+..++|..+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~--~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGK--KSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES---SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCC--ccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 4568999999999999999997776 6665 333312111 1111 12346899999999999999999998873
Q ss_pred -C--eEEEEeeccCCCC
Q 003053 136 -E--YELKIGWGKSVAL 149 (852)
Q Consensus 136 -G--~~l~V~~ak~~~~ 149 (852)
| ....|.+|=-..+
T Consensus 84 kg~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 84 KGNEYPAVVEFAPYQKV 100 (176)
T ss_dssp TS-EEEEEEEE-SS---
T ss_pred CCCCcceeEEEcchhcc
Confidence 2 3456777644433
No 174
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=74.04 E-value=22 Score=33.45 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=51.9
Q ss_pred cceEEEcCCCC-CCCHHHHHHHhccCC-CeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceec---CeE
Q 003053 64 TTNLYVGNLSP-QVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY---EYE 138 (852)
Q Consensus 64 ~~tLfVgnLp~-~vte~~L~~~F~~fG-~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~---G~~ 138 (852)
.++|.|--.|+ -++-++|..+.+.+- .|..++|++ | ...++-.+.+.|.+..+|..-...+||+.+. ...
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riir---d--~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ 86 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIR---D--GTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPET 86 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEee---C--CCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCce
Confidence 34444444444 455556655545553 477888884 2 2235667899999999999999999999875 344
Q ss_pred EEEeeccCC
Q 003053 139 LKIGWGKSV 147 (852)
Q Consensus 139 l~V~~ak~~ 147 (852)
++|-|-+..
T Consensus 87 ChvvfV~~V 95 (110)
T PF07576_consen 87 CHVVFVKSV 95 (110)
T ss_pred eEEEEEEEE
Confidence 666554443
No 175
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=72.53 E-value=17 Score=31.45 Aligned_cols=67 Identities=10% Similarity=0.211 Sum_probs=39.2
Q ss_pred eEEEc-CCCCCCCHHHHHHHhccCCC-----eeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 66 NLYVG-NLSPQVDENFLLRTFGRFGP-----IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 66 tLfVg-nLp~~vte~~L~~~F~~fG~-----I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
+|||. +--..++..+|..++...+. |-.|.|. ..|.||+-.. +.|+.++..|++..+.|+.+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v 69 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF-----------DNFSFVEVPE-EVAEKVLEALNGKKIKGKKV 69 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE------------SS-EEEEE-T-T-HHHHHHHHTT--SSS---
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe-----------eeEEEEEECH-HHHHHHHHHhcCCCCCCeeE
Confidence 45553 22346888888888876644 5567776 2689998864 58899999999999999999
Q ss_pred EEeec
Q 003053 140 KIGWG 144 (852)
Q Consensus 140 ~V~~a 144 (852)
+|..|
T Consensus 70 ~ve~A 74 (74)
T PF03880_consen 70 RVERA 74 (74)
T ss_dssp -EEE-
T ss_pred EEEEC
Confidence 99754
No 176
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.52 E-value=12 Score=44.11 Aligned_cols=82 Identities=26% Similarity=0.280 Sum_probs=60.1
Q ss_pred CCcceEEEcCCCC-CCCHHHHHHHhccC----CCeeEEEEeccC-----C--ccccCC----------------------
Q 003053 62 PQTTNLYVGNLSP-QVDENFLLRTFGRF----GPIASVKIMWPR-----T--EEERRR---------------------- 107 (852)
Q Consensus 62 ~~~~tLfVgnLp~-~vte~~L~~~F~~f----G~I~~vki~~pr-----~--d~~tg~---------------------- 107 (852)
..+.+|-|.||.+ .|.-.+|..+|..| |.|.+|+|..-. + ....|.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 3567899999998 58889999999866 589999986300 0 001121
Q ss_pred ---------------cccEEEEEECCHHHHHHHHHHhCCceecC--eEEEEee
Q 003053 108 ---------------QRNCGFVAFMNRADGQAAKDEMQGVVVYE--YELKIGW 143 (852)
Q Consensus 108 ---------------~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G--~~l~V~~ 143 (852)
..-||.|+|.+.+.|......++|..+.. ..|-+.|
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 12389999999999999999999999974 4444444
No 177
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=68.51 E-value=3.2 Score=45.65 Aligned_cols=82 Identities=16% Similarity=0.081 Sum_probs=66.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
..+++|+|++...+.+.+...+|..+|.+..+.... ......+++++.|.|...+.+..|+.......+.+..+...
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~---~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~d 163 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSS---LEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKD 163 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhh---hccccccccceeeccccHHHHHHHHHhhhccccccccccCc
Confidence 478899999999999999999999999877766552 45567889999999999999999998655567777776666
Q ss_pred eccCC
Q 003053 143 WGKSV 147 (852)
Q Consensus 143 ~ak~~ 147 (852)
.....
T Consensus 164 l~~~~ 168 (285)
T KOG4210|consen 164 LNTRR 168 (285)
T ss_pred ccccc
Confidence 55443
No 178
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=68.10 E-value=14 Score=41.49 Aligned_cols=72 Identities=15% Similarity=0.114 Sum_probs=51.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCC----CeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFG----PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG----~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
--|-+.+||++.++.++..+|..-- ....|-++ ....|+.-|-|||.|...++|+.|+.. |-..|+-+.|.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV----~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIE 236 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFV----TRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIE 236 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEE----ECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHH
Confidence 4577889999999999999997432 33344443 123567778999999999999999874 33444445554
Q ss_pred E
Q 003053 141 I 141 (852)
Q Consensus 141 V 141 (852)
+
T Consensus 237 l 237 (508)
T KOG1365|consen 237 L 237 (508)
T ss_pred H
Confidence 4
No 179
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=66.15 E-value=30 Score=32.98 Aligned_cols=96 Identities=16% Similarity=0.250 Sum_probs=62.2
Q ss_pred CHHHHHHHHHHHHhccccHHHHHHHHHHHh-cccCCCccchhhhhhhhhhhhccCCCCCCCchhhHHHHHhhhHHHHHHH
Q 003053 340 ERSQIKEAMGFALDNADAAGEIVEVLTESL-TLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESF 418 (852)
Q Consensus 340 tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l-~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~yr~~fe~~Lp~if~~l 418 (852)
+-.-..+....+.+. ..+..|+++|.+.| .........++--|.|+.-+|.|+. ..|...|...+..|. .|
T Consensus 20 ~~~~l~eIa~~t~~~-~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~------~~~~~~~~~~~~~I~-~l 91 (125)
T PF01417_consen 20 PGKLLAEIAQLTYNS-KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGS------ERFVDELRDHIDIIR-EL 91 (125)
T ss_dssp -HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-------HHHHHHHHHTHHHHH-GG
T ss_pred CHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCC------HHHHHHHHHHHHHHh-hc
Confidence 333444555555555 77899999999999 4444456678889999999999996 356666766655544 22
Q ss_pred HHHHhh--hccccchHHHHHHHHHHHHH
Q 003053 419 NDLYRS--ITGRITAEALKERVLKVLQV 444 (852)
Q Consensus 419 ~~~~~~--~~~r~~a~~~k~kv~~vL~i 444 (852)
. .|.. ..|......++++...|+.+
T Consensus 92 ~-~f~~~d~~g~d~~~~VR~~A~~i~~l 118 (125)
T PF01417_consen 92 Q-DFQYVDPKGKDQGQNVREKAKEILEL 118 (125)
T ss_dssp G-G---BBTTSTBHHHHHHHHHHHHHHH
T ss_pred c-eeeccCCCCccHHHHHHHHHHHHHHH
Confidence 2 2221 13444556788888888887
No 180
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=65.38 E-value=3.8 Score=32.94 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=25.2
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEec
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLN 32 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~ 32 (852)
+|++||.|. |+..|||..+.+. ++++.++
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~~~g~--~l~V~~a 56 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQFNGR--PLKVSYA 56 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSEETTE--EEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCc--EEEEEEC
Confidence 489999994 9999999999998 8888764
No 181
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=62.86 E-value=26 Score=29.95 Aligned_cols=55 Identities=7% Similarity=0.240 Sum_probs=42.8
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 75 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 75 ~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
.++-++++.-+..|+- ..|..- .+ | =||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~d------~t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRDD------RT----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEec------CC----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5677899999999974 333221 12 2 289999999999999999999999988765
No 182
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=62.02 E-value=79 Score=30.74 Aligned_cols=83 Identities=22% Similarity=0.433 Sum_probs=53.6
Q ss_pred ccccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCCCchhhHHHHHhhhHHHHHHHHHHHhhhccccchHH
Q 003053 354 NADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEA 433 (852)
Q Consensus 354 h~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~a~~ 433 (852)
....+.+++.+|.++|... +....+.-|.|+-=++.||. ..|...+... ..+..|..+... .-..+.
T Consensus 36 ~~~~~kea~~~l~krl~~~--~~~vq~~aL~lld~lvkNcg------~~f~~ev~~~--~fl~~l~~l~~~---~~~~~~ 102 (140)
T PF00790_consen 36 SPDGAKEAARALRKRLKHG--NPNVQLLALTLLDALVKNCG------PRFHREVASK--EFLDELVKLIKS---KKTDPE 102 (140)
T ss_dssp STTHHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHSH------HHHHHHHTSH--HHHHHHHHHHHH---TTTHHH
T ss_pred CCccHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHcCC------HHHHHHHhHH--HHHHHHHHHHcc---CCCCch
Confidence 3455889999999999763 35677888999999999995 2343333221 122222222222 112333
Q ss_pred --HHHHHHHHHHHhccCc
Q 003053 434 --LKERVLKVLQVWSDWF 449 (852)
Q Consensus 434 --~k~kv~~vL~iWe~~~ 449 (852)
.+++++.+|..|....
T Consensus 103 ~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 103 TPVKEKILELLQEWAEAF 120 (140)
T ss_dssp SHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 8999999999998754
No 183
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=57.05 E-value=1.7 Score=48.98 Aligned_cols=75 Identities=17% Similarity=0.326 Sum_probs=62.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEee
Q 003053 64 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 143 (852)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ 143 (852)
+..+-|.|+|+....+.|..+...||.|..|..+. ++.++ ..--|+|...+.+..||..+||..+....++|+|
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvn--t~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN--TDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc--cchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 45688999999999999999999999999886553 34433 2335789999999999999999999999999988
Q ss_pred c
Q 003053 144 G 144 (852)
Q Consensus 144 a 144 (852)
-
T Consensus 154 i 154 (584)
T KOG2193|consen 154 I 154 (584)
T ss_pred C
Confidence 4
No 184
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=56.80 E-value=27 Score=40.19 Aligned_cols=68 Identities=21% Similarity=0.290 Sum_probs=57.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceec
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY 135 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG-~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~ 135 (852)
.++.|+|-.+|-.++-.+|..+...|- .|.+++|++ | .-.++-...|.|.+.++|..-...+||+.+.
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivR---d--~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVR---D--GMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEee---c--CCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 378999999999999999999998764 488999995 2 1124456799999999999999999999875
No 185
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=56.40 E-value=21 Score=28.24 Aligned_cols=40 Identities=48% Similarity=0.674 Sum_probs=32.7
Q ss_pred HHHHhhhhhhhhhhhhhhhccCCcHHHHHHHHHHHhhhhhh
Q 003053 705 KLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESE 745 (852)
Q Consensus 705 k~~~~~~ai~k~~~~~~e~~~k~~ee~~kr~~~~~~~~~~~ 745 (852)
+.+++++.+++.++++++.+. .-++++.+|...|+.+...
T Consensus 5 rkR~IElk~~elrd~LEe~g~-~~eeIe~kv~~~R~~L~~~ 44 (46)
T PF08312_consen 5 RKREIELKCLELRDELEEQGY-SEEEIEEKVDELRKKLLEE 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhc
Confidence 348899999999999999998 5599999999999887654
No 186
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=53.09 E-value=7.1 Score=43.04 Aligned_cols=9 Identities=0% Similarity=-0.293 Sum_probs=4.1
Q ss_pred CCCCCcHHH
Q 003053 694 PDSGMNEEQ 702 (852)
Q Consensus 694 ~~~~~~~~~ 702 (852)
.+|.|+..+
T Consensus 327 ~pgm~~p~~ 335 (441)
T KOG1902|consen 327 YPGMEQPPH 335 (441)
T ss_pred cCCcccCCC
Confidence 444444444
No 187
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=51.18 E-value=30 Score=42.39 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHhcccCHHHHHHHHHHHHhccccHHHHHHHHHHHh
Q 003053 321 TLTDSQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESL 369 (852)
Q Consensus 321 ~L~~~~~~~l~~lL~~Lt~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l 369 (852)
.|.+.-...|.-+|-.+...-+.|+.|..=|-+-. -+..+++-|++++
T Consensus 695 ilDsKtaQnLsIflgS~rmpyeeik~~ILevne~v-Lse~~iqnLik~l 742 (1102)
T KOG1924|consen 695 ILDSKTAQNLSIFLGSFRMPYEEIKNVILEVNEDV-LSESMIQNLIKHL 742 (1102)
T ss_pred ecchHHHHHHHHHHhhccCCHHHHHHHHhhccHHH-HHHHHHHHHHHhC
Confidence 35555555566667777777777766533221111 1445555555554
No 188
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=50.33 E-value=1.4e+02 Score=28.78 Aligned_cols=79 Identities=19% Similarity=0.381 Sum_probs=49.8
Q ss_pred cccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCCCchhhHHHHHh-hhHHHHHHHHHHHhhhccccchHH
Q 003053 355 ADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEA-TLPDIMESFNDLYRSITGRITAEA 433 (852)
Q Consensus 355 ~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~yr~~fe~-~Lp~if~~l~~~~~~~~~r~~a~~ 433 (852)
...+.+.+..|.+.|...+ ....+.-|-|+--++.||... |...+.. .+.. .|..+. ...-..+.
T Consensus 32 ~~~~k~a~r~l~krl~~~n--~~v~l~AL~lLe~~vkNcg~~------f~~ev~s~~fl~---~L~~l~---~~~~~~~~ 97 (133)
T smart00288 32 PDGPKDAVRLLKKRLNNKN--PHVALLALTLLDACVKNCGSK------FHLEVASKEFLN---ELVKLI---KPKYPLPL 97 (133)
T ss_pred CccHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHCCHH------HHHHHHhHHHHH---HHHHHH---cCCCCcHH
Confidence 3447899999999997533 556777899999999999622 3222211 1111 111121 12223344
Q ss_pred HHHHHHHHHHHhcc
Q 003053 434 LKERVLKVLQVWSD 447 (852)
Q Consensus 434 ~k~kv~~vL~iWe~ 447 (852)
.++||..++..|..
T Consensus 98 Vk~kil~li~~W~~ 111 (133)
T smart00288 98 VKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999999986
No 189
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=48.74 E-value=9.4 Score=31.31 Aligned_cols=22 Identities=9% Similarity=0.249 Sum_probs=19.6
Q ss_pred cceEehhh-------hHHhhhcceeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNI 23 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~ 23 (852)
+|||||.| .|+..|+|..+.+.
T Consensus 39 ~~~a~V~F~~~~~a~~a~~~l~g~~~~~~ 67 (70)
T PF00076_consen 39 KGYAFVEFESEEDAEKALEELNGKKINGR 67 (70)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cceEEEEEcCHHHHHHHHHHcCCCEECcc
Confidence 58999999 49999999999887
No 190
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=47.73 E-value=9.9 Score=41.93 Aligned_cols=31 Identities=13% Similarity=0.042 Sum_probs=26.5
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
.|||||+| ||=.++||..+.++ .|-|..++.
T Consensus 136 KGFGFVTmen~~dadRARa~LHgt~VEGR--kIEVn~ATa 173 (376)
T KOG0125|consen 136 KGFGFVTMENPADADRARAELHGTVVEGR--KIEVNNATA 173 (376)
T ss_pred CccceEEecChhhHHHHHHHhhcceeece--EEEEeccch
Confidence 59999999 79999999999999 666666655
No 191
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=44.50 E-value=1.5e+02 Score=28.62 Aligned_cols=81 Identities=10% Similarity=0.273 Sum_probs=53.0
Q ss_pred cccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCCCchhhHHHHHhhhHHHHHHHHHHHhhhccccchHHH
Q 003053 355 ADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEAL 434 (852)
Q Consensus 355 ~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~a~~~ 434 (852)
...+.+.+..|.+.|... +....+.-|.|+-=++.||.. .|...+.. -..+..|..+.... -......
T Consensus 32 ~~~~k~a~raL~krl~~~--n~~vql~AL~lLd~~vkNcg~------~f~~~i~s--~~fl~~l~~l~~~~--~~~~~~V 99 (133)
T cd03561 32 PNGPKEAARAIRKKIKYG--NPHVQLLALTLLELLVKNCGK------PFHLQVAD--KEFLLELVKIAKNS--PKYDPKV 99 (133)
T ss_pred CCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhCCh------HHHHHHhh--HHHHHHHHHHhCCC--CCCCHHH
Confidence 445889999999999765 356678889999999999962 23333332 01111122222211 1356799
Q ss_pred HHHHHHHHHHhcc
Q 003053 435 KERVLKVLQVWSD 447 (852)
Q Consensus 435 k~kv~~vL~iWe~ 447 (852)
++|+..+|..|..
T Consensus 100 k~kil~ll~~W~~ 112 (133)
T cd03561 100 REKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999987
No 192
>smart00360 RRM RNA recognition motif.
Probab=39.94 E-value=17 Score=28.92 Aligned_cols=26 Identities=19% Similarity=0.338 Sum_probs=20.3
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEE
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFL 29 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~ 29 (852)
+|||||.|. |+..|++..+.+. .+.+
T Consensus 38 ~~~a~v~f~~~~~a~~a~~~~~~~~~~~~--~~~v 70 (71)
T smart00360 38 KGFAFVEFESEEDAEKALEALNGKELDGR--PLKV 70 (71)
T ss_pred CceEEEEeCCHHHHHHHHHHcCCCeeCCc--EEEe
Confidence 689999994 8888998888776 4443
No 193
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=39.71 E-value=2.5e+02 Score=27.72 Aligned_cols=79 Identities=18% Similarity=0.394 Sum_probs=51.4
Q ss_pred cccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCCCchhhHHHHHhhhHHHHHHHHHHHhhhccccchHHH
Q 003053 355 ADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEAL 434 (852)
Q Consensus 355 ~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~a~~~ 434 (852)
...+.+.+.+|.+.|...+ ....+.-|-|+-=+..||... |...+.+ -.....|..+.. .+ .....
T Consensus 32 ~~~~k~a~ral~KRl~~~n--~~v~l~AL~LLe~~vkNCG~~------fh~evas--k~Fl~eL~kl~~---~~-~~~~V 97 (144)
T cd03568 32 ENGAKDCLKAIMKRLNHKD--PNVQLRALTLLDACAENCGKR------FHQEVAS--RDFTQELKKLIN---DR-VHPTV 97 (144)
T ss_pred CccHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHCCHH------HHHHHhh--HHHHHHHHHHhc---cc-CCHHH
Confidence 4457899999999996543 466777888888889999632 3322221 122222222222 22 56799
Q ss_pred HHHHHHHHHHhcc
Q 003053 435 KERVLKVLQVWSD 447 (852)
Q Consensus 435 k~kv~~vL~iWe~ 447 (852)
+++|+.+|.-|..
T Consensus 98 k~kil~li~~W~~ 110 (144)
T cd03568 98 KEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999974
No 194
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=39.44 E-value=2.2e+02 Score=27.98 Aligned_cols=82 Identities=16% Similarity=0.308 Sum_probs=50.5
Q ss_pred cHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCCCchhhHHHHHhhhHHHHHHHHHHHhhhccccchHHHHH
Q 003053 357 AAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKE 436 (852)
Q Consensus 357 ~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~a~~~k~ 436 (852)
.+.+.+..|.+.|...+ ....|.-|-|+-=+..||....... .-...|-.-|..++ ..-| .|.......++
T Consensus 35 ~~k~a~rai~krl~~~n--~~v~l~AL~LLe~~vkNCG~~fh~e-vas~~Fl~el~kl~---~~k~---~~~~~~~~Vk~ 105 (139)
T cd03567 35 GPQLAVRLLAHKIQSPQ--EKEALQALTVLEACMKNCGERFHSE-VGKFRFLNELIKLV---SPKY---LGSRTSEKVKT 105 (139)
T ss_pred cHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHcCHHHHHH-HHhHHHHHHHHHHh---cccc---CCCCCCHHHHH
Confidence 46788889999986544 4456777888888888986321110 01122222233322 1111 13445689999
Q ss_pred HHHHHHHHhcc
Q 003053 437 RVLKVLQVWSD 447 (852)
Q Consensus 437 kv~~vL~iWe~ 447 (852)
||..+|..|.+
T Consensus 106 kil~li~~W~~ 116 (139)
T cd03567 106 KIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHH
Confidence 99999999985
No 195
>PLN03213 repressor of silencing 3; Provisional
Probab=36.49 E-value=21 Score=41.35 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=28.2
Q ss_pred cceEehhhh---------HHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLFS---------FFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f~---------A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.|. ||.+|+|....|+ .|+|..+.+.
T Consensus 48 RGFAFVEMssdddaEeeKAISaLNGAEWKGR--~LKVNKAKP~ 88 (759)
T PLN03213 48 RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG--RLRLEKAKEH 88 (759)
T ss_pred CceEEEEecCCcHHHHHHHHHHhcCCeecCc--eeEEeeccHH
Confidence 899999994 9999999998888 8999888765
No 196
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=34.56 E-value=1.1e+02 Score=36.50 Aligned_cols=71 Identities=8% Similarity=0.110 Sum_probs=53.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhc--cCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCC--ceec
Q 003053 60 GDPQTTNLYVGNLSPQVDENFLLRTFG--RFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG--VVVY 135 (852)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~--~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG--~~l~ 135 (852)
.....|-+.+.-+|..+-+++++.+|. .+-++.+|.+.. + .-=||+|++..||+.|...|.- +.|.
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~---------N-~nWyITfesd~DAQqAykylreevk~fq 240 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH---------N-DNWYITFESDTDAQQAYKYLREEVKTFQ 240 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee---------c-CceEEEeecchhHHHHHHHHHHHHHhhc
Confidence 345667888999999999999999996 467788887652 2 1238999999999999876543 3355
Q ss_pred CeEEE
Q 003053 136 EYELK 140 (852)
Q Consensus 136 G~~l~ 140 (852)
|++|.
T Consensus 241 gKpIm 245 (684)
T KOG2591|consen 241 GKPIM 245 (684)
T ss_pred Ccchh
Confidence 55553
No 197
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=34.05 E-value=15 Score=39.37 Aligned_cols=70 Identities=27% Similarity=0.405 Sum_probs=44.6
Q ss_pred ceEEEcCCCC------------CCCHHHHHHHhccCCCeeEEEEec--cCCccccCCcc-----cEEE---------EEE
Q 003053 65 TNLYVGNLSP------------QVDENFLLRTFGRFGPIASVKIMW--PRTEEERRRQR-----NCGF---------VAF 116 (852)
Q Consensus 65 ~tLfVgnLp~------------~vte~~L~~~F~~fG~I~~vki~~--pr~d~~tg~~r-----g~gF---------V~F 116 (852)
-|||+.+||- --+++-|...|..||.|..|.|.. |.-...+|+.. |||| |.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 3788888773 246778999999999998887642 22223445543 3433 445
Q ss_pred CCHHHHHHHHHHhCCcee
Q 003053 117 MNRADGQAAKDEMQGVVV 134 (852)
Q Consensus 117 ~~~~~A~~Ai~~lnG~~l 134 (852)
+....-..|+.+|.|..+
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 555555667777776654
No 198
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=33.86 E-value=4.1e+02 Score=26.07 Aligned_cols=79 Identities=16% Similarity=0.334 Sum_probs=50.4
Q ss_pred ccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCCCchhhHHHHHhhhHHHHHHHHHHHhhhccccchHHHH
Q 003053 356 DAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALK 435 (852)
Q Consensus 356 ~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~a~~~k 435 (852)
..+.+.+..|.+.|...+ ....+.-|-|+-=++.||..+..... -...|-..|..++ .. -.....+
T Consensus 37 ~~~k~a~ral~krl~~~n--~~vql~AL~LLe~~vkNCG~~fh~ev-as~~fl~~l~~l~-------~~----~~~~~Vk 102 (142)
T cd03569 37 VQPKYAMRALKKRLLSKN--PNVQLYALLLLESCVKNCGTHFHDEV-ASREFMDELKDLI-------KT----TKNEEVR 102 (142)
T ss_pred CCHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHHCCHHHHHHH-hhHHHHHHHHHHH-------cc----cCCHHHH
Confidence 458899999999997643 45667778888889999962211100 0112222222222 21 2456899
Q ss_pred HHHHHHHHHhccC
Q 003053 436 ERVLKVLQVWSDW 448 (852)
Q Consensus 436 ~kv~~vL~iWe~~ 448 (852)
+|+..+|.-|...
T Consensus 103 ~kil~li~~W~~~ 115 (142)
T cd03569 103 QKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999863
No 199
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=33.52 E-value=62 Score=25.08 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=25.6
Q ss_pred HhhcCChHHHHHHHHHcCcccc--CChHHHHHHHHh
Q 003053 515 ELMNLPLSELERRCRHNGLSLV--GGREMMVARLLS 548 (852)
Q Consensus 515 ~~~~~~~~~l~~~c~~~gl~~~--~~~~~~~~rl~~ 548 (852)
++..+...+|..+|+..||... -.+++||..++.
T Consensus 1 eL~~~~~~eL~~iAk~lgI~~~~~~~K~eLI~~Il~ 36 (43)
T PF07498_consen 1 ELKSMTLSELREIAKELGIEGYSKMRKQELIFAILK 36 (43)
T ss_dssp HHHCS-HHHHHHHHHCTT-TTGCCS-HHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCCCCCcCCHHHHHHHHHH
Confidence 4678999999999999999765 478888887764
No 200
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=32.35 E-value=4.4e+02 Score=29.30 Aligned_cols=26 Identities=38% Similarity=0.552 Sum_probs=18.2
Q ss_pred HHHHHHHHHcCccccCChHHHHHHHHhhH
Q 003053 522 SELERRCRHNGLSLVGGREMMVARLLSLE 550 (852)
Q Consensus 522 ~~l~~~c~~~gl~~~~~~~~~~~rl~~~~ 550 (852)
+||+|+| |+...-+-++|++++..-+
T Consensus 267 ~eLKr~c---~~kvevd~eK~~~~i~q~e 292 (410)
T KOG4715|consen 267 NELKRLC---GLKVEVDMEKMAAEIAQAE 292 (410)
T ss_pred HHHHHhc---CCcccccHHHHHHHHHHHH
Confidence 5788888 4455678888888875433
No 201
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=32.33 E-value=24 Score=34.12 Aligned_cols=30 Identities=10% Similarity=0.084 Sum_probs=26.5
Q ss_pred ceEehhhh-------HHhhhcceeccCCCCcEEEEeccC
Q 003053 3 SFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 3 ~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
|||||.|. |+..++|.-+..+ ||++.|+..
T Consensus 79 GFCFVeyy~~~dA~~AlryisgtrLddr--~ir~D~D~G 115 (153)
T KOG0121|consen 79 GFCFVEYYSRDDAEDALRYISGTRLDDR--PIRIDWDAG 115 (153)
T ss_pred ceEEEEEecchhHHHHHHHhccCccccc--ceeeecccc
Confidence 89999994 8899999999888 999988765
No 202
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=30.22 E-value=3.4e+02 Score=31.43 Aligned_cols=112 Identities=13% Similarity=0.212 Sum_probs=76.0
Q ss_pred CCCCHHHHHHHHHHHHhcccC------HHHHHHHH-HHHHhccccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhcc
Q 003053 320 RTLTDSQRDEFEDMLRALTLE------RSQIKEAM-GFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHN 392 (852)
Q Consensus 320 ~~L~~~~~~~l~~lL~~Lt~t------r~sI~~~~-~w~l~h~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~n 392 (852)
.+|.++-..-|...|=.|..+ -..+..|+ .|+-.....+..++..|+++- +.+...+.+..|..+.+||-.
T Consensus 208 ~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~W--P~t~s~Kev~FL~el~~il~~ 285 (409)
T PF01603_consen 208 VPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHW--PKTNSQKEVLFLNELEEILEV 285 (409)
T ss_dssp SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS---SS-HHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhC--CCCCchhHHHHHHHHHHHHHh
Confidence 356677777777777777322 23444444 455555566888888888887 455678889999999999998
Q ss_pred CCCCCCCchhhHHHHHhhhHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhccCcc
Q 003053 393 SSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFL 450 (852)
Q Consensus 393 s~~~~~na~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~a~~~k~kv~~vL~iWe~~~v 450 (852)
.. -..|...+..+|..++....+. +-+-.++.|.+|....+
T Consensus 286 ~~---------~~~f~~i~~~lf~~la~ci~S~--------h~qVAErAl~~w~n~~~ 326 (409)
T PF01603_consen 286 LP---------PEEFQKIMVPLFKRLAKCISSP--------HFQVAERALYFWNNEYF 326 (409)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHTSS--------SHHHHHHHHGGGGSHHH
T ss_pred cC---------HHHHHHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHCCHHH
Confidence 74 4578899999998888765543 24456889999987654
No 203
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=29.42 E-value=73 Score=26.01 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=22.8
Q ss_pred hcchhHHHHhhcCChHHHHHHHHHcCccc
Q 003053 507 MGKGAAIKELMNLPLSELERRCRHNGLSL 535 (852)
Q Consensus 507 ~~~~~~~~~~~~~~~~~l~~~c~~~gl~~ 535 (852)
..+-..+.+-..+....|++.|++.||..
T Consensus 15 hlp~~eAA~~Lgv~~T~LKr~CR~~GI~R 43 (52)
T PF02042_consen 15 HLPIKEAAKELGVSVTTLKRRCRRLGIPR 43 (52)
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHcCCCC
Confidence 33445566678899999999999999863
No 204
>PLN03120 nucleic acid binding protein; Provisional
Probab=26.93 E-value=39 Score=36.64 Aligned_cols=30 Identities=7% Similarity=-0.019 Sum_probs=25.4
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
+|||||.|. |+ .|+|..+.++ +|.|..+..
T Consensus 43 ~GfAFVtF~d~eaAe~Al-lLnG~~l~gr--~V~Vt~a~~ 79 (260)
T PLN03120 43 SQIAYVTFKDPQGAETAL-LLSGATIVDQ--SVTITPAED 79 (260)
T ss_pred CCEEEEEeCcHHHHHHHH-HhcCCeeCCc--eEEEEeccC
Confidence 699999994 88 5999999999 888888654
No 205
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.37 E-value=70 Score=36.36 Aligned_cols=54 Identities=15% Similarity=0.269 Sum_probs=43.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHH
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKD 127 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~ 127 (852)
-.|=|.++|...-.++|..+|+.||. ..++|+| -..-.+|-.|.+...|..|+.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~-kgfdIkW--------vDdthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKW--------VDDTHALAVFSSVNRAAEALT 445 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhc-CCceeEE--------eecceeEEeecchHHHHHHhh
Confidence 36888999999999999999999976 4556666 233678999999999998875
No 206
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.79 E-value=1.4e+02 Score=32.05 Aligned_cols=32 Identities=25% Similarity=0.176 Sum_probs=24.8
Q ss_pred CCcCCCCchhhhh-ccccCCCCCCccccccccc
Q 003053 615 TMLTTPQPEIKAF-TKKEKNDPVLPASKWALED 646 (852)
Q Consensus 615 ~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~ 646 (852)
-|||-..|...+. ..|+++.-+-|-|..++-+
T Consensus 163 FWlPs~tP~A~atklekP~~~v~CP~s~kplkl 195 (303)
T KOG3039|consen 163 FWLPSLTPTAAATKLEKPSTTVVCPVSGKPLKL 195 (303)
T ss_pred eecCccCchhhhhcccCCCceeeccCCCCccch
Confidence 4888888877665 5677888888888888765
No 207
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=24.96 E-value=1.5e+02 Score=36.78 Aligned_cols=13 Identities=23% Similarity=0.570 Sum_probs=6.3
Q ss_pred hHHHHHhhhHHHH
Q 003053 403 YRTKFEATLPDIM 415 (852)
Q Consensus 403 yr~~fe~~Lp~if 415 (852)
|...+...-|.|.
T Consensus 790 fse~vnniKP~i~ 802 (1102)
T KOG1924|consen 790 FSEQVNNIKPDIV 802 (1102)
T ss_pred HHHHHhhcChHHH
Confidence 4444444445554
No 208
>PF14733 ACDC: AP2-coincident C-terminal
Probab=23.83 E-value=1.5e+02 Score=26.74 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=16.8
Q ss_pred chhhhhhhhhhhhccCCCC
Q 003053 378 TKVARLMLVSDVLHNSSAP 396 (852)
Q Consensus 378 ~KL~~LYLinDIL~ns~~~ 396 (852)
.|.+++|+++|+.+||...
T Consensus 8 ~K~Ai~~iL~DL~~~c~~~ 26 (91)
T PF14733_consen 8 CKEAILLILSDLKDNCLPN 26 (91)
T ss_pred HHHHHHHHHHHHHHhhchh
Confidence 5899999999999999743
No 209
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=22.54 E-value=1.2e+02 Score=33.36 Aligned_cols=84 Identities=17% Similarity=0.290 Sum_probs=57.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccC----CccccCCcccEEEEEECCHHHHHHHH----HHhCC--
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPR----TEEERRRQRNCGFVAFMNRADGQAAK----DEMQG-- 131 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr----~d~~tg~~rg~gFV~F~~~~~A~~Ai----~~lnG-- 131 (852)
-.++.|-+.|+...++-..+...|-+||+|.+|.++.-. .+...-.......+.|-+++.+-.-. ..|.-
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 346679999999999999999999999999999998421 01112233467789999888764322 11211
Q ss_pred ceecCeEEEEeecc
Q 003053 132 VVVYEYELKIGWGK 145 (852)
Q Consensus 132 ~~l~G~~l~V~~ak 145 (852)
+.+....|.|.|..
T Consensus 93 ~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 93 TKLKSESLTLSFVS 106 (309)
T ss_pred HhcCCcceeEEEEE
Confidence 23566777777754
No 210
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=22.35 E-value=1.5e+02 Score=23.31 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=27.6
Q ss_pred hhcCChHHHHHHHHHcCcccc----CChHHHHHHHHhhH
Q 003053 516 LMNLPLSELERRCRHNGLSLV----GGREMMVARLLSLE 550 (852)
Q Consensus 516 ~~~~~~~~l~~~c~~~gl~~~----~~~~~~~~rl~~~~ 550 (852)
+..+..+||...|++.|+... .++...+.+|..+.
T Consensus 3 ~~~LSd~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~~~ 41 (44)
T smart00540 3 VDRLSDAELRAELKQYGLPPGPITDTTRKLYEKKLRKLR 41 (44)
T ss_pred hhHcCHHHHHHHHHHcCCCCCCcCcchHHHHHHHHHHHH
Confidence 456788999999999999875 57777777777654
No 211
>PF07420 DUF1509: Protein of unknown function (DUF1509); InterPro: IPR010883 This family consists of several uncharacterised viral proteins, which include LORF2 from the Marek's disease-like viruses (Meleagrid herpesvirus 1 (MeHV-1) and LORF3 from Gallid herpesvirus 2. Members of this family are typically around 400 residues in length. The function of this family is unknown.
Probab=22.08 E-value=66 Score=35.04 Aligned_cols=15 Identities=7% Similarity=-0.037 Sum_probs=8.1
Q ss_pred CchhhHHHHHhhhHH
Q 003053 399 NASAYRTKFEATLPD 413 (852)
Q Consensus 399 na~~yr~~fe~~Lp~ 413 (852)
-+|.|-+....+|--
T Consensus 64 atWpFWk~M~rCLDW 78 (377)
T PF07420_consen 64 ATWPFWKVMRRCLDW 78 (377)
T ss_pred cccHHHHHHHHHHHH
Confidence 356665555555533
No 212
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=21.89 E-value=58 Score=38.01 Aligned_cols=34 Identities=9% Similarity=0.047 Sum_probs=30.3
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPS 37 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~ 37 (852)
|||||+.| +|++.++|..+.++ ++++.++...+.
T Consensus 60 ~G~~f~~~~~~~~~~~a~~~lNg~~~~gr--~l~v~~~~~~~~ 100 (435)
T KOG0108|consen 60 KGFGFCEFTDEETAERAIRNLNGAEFNGR--KLRVNYASNRKN 100 (435)
T ss_pred CceeeEecCchhhHHHHHHhcCCcccCCc--eEEeecccccch
Confidence 79999999 59999999999999 999999877644
No 213
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=20.11 E-value=41 Score=34.40 Aligned_cols=31 Identities=10% Similarity=0.075 Sum_probs=26.4
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
.||||+++ .|+..|+|+.|.++ .|+|.+-..
T Consensus 77 KGFaFLcYEDQRSTILAVDN~NGiki~gR--tirVDHv~~ 114 (219)
T KOG0126|consen 77 KGFAFLCYEDQRSTILAVDNLNGIKILGR--TIRVDHVSN 114 (219)
T ss_pred cceEEEEecCccceEEEEeccCCceecce--eEEeeeccc
Confidence 59999999 39999999999999 888877544
Done!