Query 003053
Match_columns 852
No_of_seqs 688 out of 3608
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 11:35:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003053.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003053hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2km4_A Regulator of TY1 transp 99.9 7.6E-26 2.6E-30 219.5 12.0 130 327-466 5-134 (142)
2 4fu3_A Regulation of nuclear P 99.9 1.1E-24 3.9E-29 209.5 9.7 128 326-466 5-132 (135)
3 4flb_A Regulation of nuclear P 99.9 1.1E-24 3.7E-29 208.9 8.8 126 325-465 5-130 (132)
4 1x4o_A Splicing factor 4; stru 99.8 5.1E-22 1.8E-26 172.0 1.8 72 199-270 5-76 (78)
5 1ug0_A Splicing factor 4; SURP 99.8 3.6E-21 1.2E-25 170.3 0.4 71 200-270 16-86 (88)
6 4fxv_A ELAV-like protein 1; RN 99.7 3.2E-18 1.1E-22 155.6 10.8 83 61-146 16-98 (99)
7 1sz9_A PCF11 protein; RNA poly 99.7 8.7E-18 3E-22 162.9 13.2 127 325-467 7-139 (144)
8 2yh0_A Splicing factor U2AF 65 99.7 2.8E-17 9.6E-22 165.8 15.5 137 2-148 51-195 (198)
9 3md3_A Nuclear and cytoplasmic 99.7 1.8E-17 6E-22 161.9 13.5 119 2-146 41-166 (166)
10 2kn4_A Immunoglobulin G-bindin 99.7 1.7E-17 5.9E-22 162.7 12.3 85 61-148 67-151 (158)
11 2e5z_A SFRS8 protein, splicing 99.7 1.4E-18 4.6E-23 153.1 3.0 66 201-270 15-80 (90)
12 2qfj_A FBP-interacting repress 99.7 5.5E-18 1.9E-22 173.4 6.4 131 2-149 70-207 (216)
13 2e60_A SFRS8 protein, splicing 99.7 2.6E-18 8.7E-23 155.5 3.0 68 201-269 17-84 (101)
14 2g4b_A Splicing factor U2AF 65 99.7 4.7E-17 1.6E-21 160.4 11.5 114 2-144 51-171 (172)
15 2dt6_A Splicing factor 3 subun 99.7 4.4E-18 1.5E-22 142.0 1.7 60 210-270 2-61 (64)
16 3s8s_A Histone-lysine N-methyl 99.7 1.5E-16 5E-21 147.5 11.5 83 61-146 3-85 (110)
17 1b7f_A Protein (SXL-lethal pro 99.7 1.4E-16 4.8E-21 156.2 12.0 115 2-144 45-168 (168)
18 2dgo_A Cytotoxic granule-assoc 99.7 5.3E-16 1.8E-20 144.0 15.1 88 60-150 11-98 (115)
19 4f02_A Polyadenylate-binding p 99.7 9E-17 3.1E-21 165.6 9.9 118 2-147 57-181 (213)
20 1fje_B Nucleolin RBD12, protei 99.7 2.3E-16 8E-21 156.2 12.3 114 2-147 54-174 (175)
21 3md1_A Nuclear and cytoplasmic 99.7 3.5E-16 1.2E-20 136.2 11.1 81 64-147 1-81 (83)
22 2lxi_A RNA-binding protein 10; 99.7 7.9E-17 2.7E-21 144.0 7.1 82 64-148 1-84 (91)
23 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.9E-16 1E-20 138.0 10.5 83 62-147 4-86 (87)
24 1fxl_A Paraneoplastic encephal 99.7 2.4E-16 8.2E-21 153.9 10.9 115 2-144 44-167 (167)
25 2i2y_A Fusion protein consists 99.7 2E-16 6.8E-21 154.1 10.0 129 1-147 12-148 (150)
26 4f25_A Polyadenylate-binding p 99.7 3.4E-16 1.2E-20 145.9 10.8 80 63-147 4-83 (115)
27 2e5h_A Zinc finger CCHC-type a 99.6 8.4E-16 2.9E-20 137.2 12.6 83 60-145 12-94 (94)
28 1whw_A Hypothetical protein ri 99.6 7.9E-16 2.7E-20 138.8 12.6 85 62-149 6-90 (99)
29 3pgw_A U1-A; protein-RNA compl 99.6 1E-15 3.5E-20 163.7 15.3 78 61-146 204-282 (282)
30 3d9j_A RNA-binding protein 16; 99.6 2.9E-16 9.8E-21 152.6 10.0 130 326-466 3-138 (145)
31 2lkz_A RNA-binding protein 5; 99.6 1.9E-16 6.4E-21 143.0 7.8 80 64-146 9-94 (95)
32 2dnz_A Probable RNA-binding pr 99.6 9.2E-16 3.2E-20 137.2 12.3 84 62-148 3-86 (95)
33 3mdf_A Peptidyl-prolyl CIS-tra 99.6 4.9E-16 1.7E-20 135.9 10.2 82 61-145 4-85 (85)
34 2cpz_A CUG triplet repeat RNA- 99.6 1.2E-15 4.2E-20 141.6 13.3 86 60-148 21-106 (115)
35 2ghp_A U4/U6 snRNA-associated 99.6 4.8E-16 1.6E-20 167.1 12.1 124 2-147 159-291 (292)
36 2dgs_A DAZ-associated protein 99.6 1.2E-15 4.2E-20 137.7 12.8 84 61-148 7-90 (99)
37 2cqd_A RNA-binding region cont 99.6 1.9E-15 6.6E-20 140.5 14.4 87 60-150 13-99 (116)
38 2cqb_A Peptidyl-prolyl CIS-tra 99.6 8.7E-16 3E-20 139.3 11.7 85 61-148 9-93 (102)
39 2cq0_A Eukaryotic translation 99.6 1.2E-15 4.1E-20 138.7 12.5 85 61-148 12-96 (103)
40 1l3k_A Heterogeneous nuclear r 99.6 6.1E-16 2.1E-20 155.7 11.5 123 2-148 55-184 (196)
41 3p5t_L Cleavage and polyadenyl 99.6 1.2E-16 3.9E-21 142.2 5.4 81 65-148 2-84 (90)
42 2cpf_A RNA binding motif prote 99.6 9.8E-16 3.4E-20 137.9 11.4 84 62-148 3-89 (98)
43 2cqc_A Arginine/serine-rich sp 99.6 1.5E-15 5.2E-20 135.6 12.3 83 61-146 12-94 (95)
44 1sjq_A Polypyrimidine tract-bi 99.6 6.6E-16 2.2E-20 141.7 10.0 81 61-150 13-95 (105)
45 2do4_A Squamous cell carcinoma 99.6 1.8E-15 6E-20 136.9 12.6 84 61-148 14-97 (100)
46 1p27_B RNA-binding protein 8A; 99.6 7E-16 2.4E-20 140.9 10.1 84 62-148 21-104 (106)
47 2x1f_A MRNA 3'-END-processing 99.6 1E-15 3.5E-20 137.5 10.9 82 64-148 2-83 (96)
48 2do0_A HnRNP M, heterogeneous 99.6 3.5E-15 1.2E-19 138.1 14.8 84 61-148 12-95 (114)
49 2fy1_A RNA-binding motif prote 99.6 1.3E-15 4.4E-20 142.3 11.7 83 63-149 6-88 (116)
50 2la6_A RNA-binding protein FUS 99.6 9.5E-16 3.2E-20 138.5 10.4 82 61-145 10-99 (99)
51 2jrs_A RNA-binding protein 39; 99.6 1.3E-15 4.4E-20 140.5 11.4 87 58-147 20-106 (108)
52 2khc_A Testis-specific RNP-typ 99.6 2.5E-15 8.6E-20 140.0 13.4 83 60-145 36-118 (118)
53 1x5t_A Splicing factor 3B subu 99.6 1.3E-15 4.4E-20 136.5 10.9 84 62-148 3-87 (96)
54 2dnm_A SRP46 splicing factor; 99.6 1.2E-15 4E-20 138.8 10.8 84 62-148 11-94 (103)
55 1qm9_A Polypyrimidine tract-bi 99.6 1.2E-15 4.1E-20 154.4 12.0 136 2-147 41-197 (198)
56 2div_A TRNA selenocysteine ass 99.6 8.7E-16 3E-20 138.5 9.7 85 62-149 7-96 (99)
57 2cph_A RNA binding motif prote 99.6 2.3E-15 7.7E-20 137.7 12.6 85 61-148 12-98 (107)
58 2adc_A Polypyrimidine tract-bi 99.6 1.7E-15 5.8E-20 157.8 13.3 136 2-147 72-228 (229)
59 2lea_A Serine/arginine-rich sp 99.6 3.3E-16 1.1E-20 150.3 7.2 84 62-148 45-128 (135)
60 1x5u_A Splicing factor 3B subu 99.6 1.7E-15 5.7E-20 138.2 11.3 85 61-148 12-96 (105)
61 1x4h_A RNA-binding protein 28; 99.6 2.6E-15 8.9E-20 138.2 12.6 85 61-148 12-102 (111)
62 2dgp_A Bruno-like 4, RNA bindi 99.6 1.6E-15 5.5E-20 138.5 10.8 86 60-148 9-97 (106)
63 2dnh_A Bruno-like 5, RNA bindi 99.6 2.3E-15 7.8E-20 137.3 11.8 84 61-148 12-98 (105)
64 2dhg_A TRNA selenocysteine ass 99.6 1.4E-15 4.7E-20 138.5 10.3 84 62-149 7-92 (104)
65 3r27_A HnRNP L, heterogeneous 99.6 2E-15 6.9E-20 137.2 11.2 80 61-149 18-99 (100)
66 1x5s_A Cold-inducible RNA-bind 99.6 1.7E-15 5.8E-20 137.4 10.8 85 61-148 9-93 (102)
67 2d9p_A Polyadenylate-binding p 99.6 3.1E-15 1E-19 136.0 12.5 83 61-148 12-94 (103)
68 3ns6_A Eukaryotic translation 99.6 3.4E-16 1.2E-20 142.2 6.0 81 63-146 5-92 (100)
69 1oo0_B CG8781-PA, drosophila Y 99.6 1.9E-15 6.6E-20 139.1 11.0 85 61-148 23-107 (110)
70 2cq3_A RNA-binding protein 9; 99.6 7.4E-15 2.5E-19 133.5 14.7 85 60-149 11-95 (103)
71 2kt5_A RNA and export factor-b 99.6 1.1E-14 3.8E-19 137.1 16.4 85 61-149 32-116 (124)
72 3nmr_A Cugbp ELAV-like family 99.6 1.5E-15 5.3E-20 149.6 10.8 117 2-144 47-174 (175)
73 2dgx_A KIAA0430 protein; RRM d 99.6 2.7E-15 9.1E-20 135.1 11.4 81 62-148 7-91 (96)
74 1u6f_A Tcubp1, RNA-binding pro 99.6 7.6E-15 2.6E-19 140.8 15.2 87 59-148 37-123 (139)
75 2cpe_A RNA-binding protein EWS 99.6 3.1E-15 1E-19 138.4 11.9 85 61-148 12-104 (113)
76 4a8x_A RNA-binding protein wit 99.6 2E-15 6.8E-20 132.8 10.1 82 63-147 3-85 (88)
77 3smz_A Protein raver-1, ribonu 99.6 1.9E-15 6.4E-20 161.8 12.0 121 2-148 137-265 (284)
78 2err_A Ataxin-2-binding protei 99.6 2.3E-15 8E-20 138.8 10.6 84 60-148 25-108 (109)
79 2dgv_A HnRNP M, heterogeneous 99.6 2.6E-15 9E-20 133.4 10.3 83 62-149 6-88 (92)
80 2dng_A Eukaryotic translation 99.6 5.6E-15 1.9E-19 134.4 12.7 83 61-148 12-94 (103)
81 2cqp_A RNA-binding protein 12; 99.6 1.7E-15 6E-20 136.3 9.1 84 61-147 12-95 (98)
82 2m2b_A RNA-binding protein 10; 99.6 2.5E-15 8.4E-20 143.2 10.5 85 60-148 19-109 (131)
83 2wbr_A GW182, gawky, LD47780P; 99.6 3.5E-15 1.2E-19 131.7 10.4 75 62-145 5-79 (89)
84 2cqi_A Nucleolysin TIAR; RNA r 99.6 1E-14 3.5E-19 132.5 13.6 83 61-148 12-94 (103)
85 2ywk_A Putative RNA-binding pr 99.6 3.5E-15 1.2E-19 133.4 10.3 82 61-146 13-94 (95)
86 3ulh_A THO complex subunit 4; 99.6 4.9E-15 1.7E-19 135.5 11.3 81 61-145 26-106 (107)
87 2cpi_A CCR4-NOT transcription 99.6 4.2E-15 1.4E-19 137.5 10.9 87 62-148 13-102 (111)
88 1wex_A Hypothetical protein (r 99.6 6.2E-15 2.1E-19 135.3 11.9 80 61-149 12-93 (104)
89 1x4e_A RNA binding motif, sing 99.6 8.7E-16 3E-20 134.6 5.9 81 62-145 3-83 (85)
90 3n9u_C Cleavage and polyadenyl 99.6 2.4E-15 8.2E-20 148.0 9.8 82 63-147 54-137 (156)
91 3ucg_A Polyadenylate-binding p 99.6 4.3E-15 1.5E-19 131.1 10.3 81 63-147 5-85 (89)
92 3smz_A Protein raver-1, ribonu 99.6 5.1E-15 1.7E-19 158.5 12.9 112 2-147 57-175 (284)
93 3ex7_B RNA-binding protein 8A; 99.6 3.3E-15 1.1E-19 140.9 9.9 85 61-148 19-103 (126)
94 3s7r_A Heterogeneous nuclear r 99.6 6.3E-15 2.2E-19 129.6 11.1 80 61-144 8-87 (87)
95 2ytc_A PRE-mRNA-splicing facto 99.6 5.6E-15 1.9E-19 129.3 10.6 76 61-145 9-85 (85)
96 1x4a_A Splicing factor, argini 99.6 1.2E-14 4.3E-19 133.5 13.4 82 61-148 19-100 (109)
97 2dh8_A DAZ-associated protein 99.6 5.6E-15 1.9E-19 134.8 11.0 84 61-148 13-96 (105)
98 2kxn_B Transformer-2 protein h 99.6 3.6E-15 1.2E-19 142.0 10.0 84 61-147 43-126 (129)
99 1wi8_A EIF-4B, eukaryotic tran 99.6 9.9E-15 3.4E-19 133.0 12.4 82 62-148 13-95 (104)
100 2cjk_A Nuclear polyadenylated 99.6 7.7E-16 2.6E-20 150.9 5.3 81 63-147 86-166 (167)
101 1h2v_Z 20 kDa nuclear CAP bind 99.6 7.6E-15 2.6E-19 143.8 12.4 85 61-148 36-120 (156)
102 2cqg_A TDP-43, TAR DNA-binding 99.6 1.7E-14 5.9E-19 131.0 13.8 84 61-149 12-95 (103)
103 3tyt_A Heterogeneous nuclear r 99.6 5.5E-15 1.9E-19 151.8 11.8 136 2-144 42-204 (205)
104 2cq1_A PTB-like protein L; RRM 99.6 1.1E-14 3.8E-19 132.8 12.4 80 61-149 12-93 (101)
105 2dgt_A RNA-binding protein 30; 99.6 1.5E-14 5.3E-19 128.7 13.0 77 61-148 7-83 (92)
106 1x4d_A Matrin 3; structural ge 99.6 4.5E-15 1.5E-19 135.7 9.6 77 63-148 14-93 (102)
107 1s79_A Lupus LA protein; RRM, 99.6 2.7E-15 9.4E-20 137.3 8.2 81 61-146 8-88 (103)
108 2cq4_A RNA binding motif prote 99.6 4.1E-15 1.4E-19 137.8 9.4 82 62-147 23-104 (114)
109 2a3j_A U1 small nuclear ribonu 99.6 4.4E-15 1.5E-19 141.2 9.7 82 61-148 26-111 (127)
110 2ki2_A SS-DNA binding protein 99.6 7.3E-16 2.5E-20 136.6 4.0 81 65-149 2-82 (90)
111 1p1t_A Cleavage stimulation fa 99.6 1.6E-15 5.5E-20 137.9 6.4 84 62-148 6-89 (104)
112 2dis_A Unnamed protein product 99.6 6.3E-15 2.2E-19 135.2 10.4 86 62-149 6-94 (109)
113 2dgw_A Probable RNA-binding pr 99.6 1.1E-14 3.7E-19 129.3 11.6 81 61-147 7-87 (91)
114 2ad9_A Polypyrimidine tract-bi 99.6 7.3E-15 2.5E-19 137.9 10.9 81 61-150 28-110 (119)
115 2la4_A Nuclear and cytoplasmic 99.6 5E-15 1.7E-19 134.1 9.3 78 60-146 23-100 (101)
116 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.5E-14 5.1E-19 138.4 12.7 83 59-144 58-140 (140)
117 2rs2_A Musashi-1, RNA-binding 99.6 1E-14 3.6E-19 134.5 11.2 85 60-148 21-105 (109)
118 1x4g_A Nucleolysin TIAR; struc 99.6 1.2E-14 4.1E-19 133.7 11.5 79 61-148 22-100 (109)
119 2ek1_A RNA-binding protein 12; 99.6 3.3E-15 1.1E-19 133.6 7.3 83 61-146 12-94 (95)
120 2j76_E EIF-4B, EIF4B, eukaryot 99.6 3E-15 1E-19 135.8 7.0 82 61-147 16-98 (100)
121 1whx_A Hypothetical protein ri 99.6 5.4E-15 1.9E-19 136.9 8.7 79 62-149 8-86 (111)
122 1x4f_A Matrin 3; structural ge 99.6 6.2E-15 2.1E-19 136.9 9.0 79 61-148 22-103 (112)
123 2nlw_A Eukaryotic translation 99.6 9.4E-15 3.2E-19 133.8 9.8 81 62-147 13-100 (105)
124 1why_A Hypothetical protein ri 99.6 1.8E-14 6.1E-19 129.6 11.4 78 61-147 14-93 (97)
125 2fc9_A NCL protein; structure 99.6 2.3E-14 7.9E-19 129.8 12.3 81 61-148 12-92 (101)
126 3sde_A Paraspeckle component 1 99.6 9.9E-15 3.4E-19 155.0 11.4 111 2-147 58-179 (261)
127 1x5o_A RNA binding motif, sing 99.6 2.1E-14 7.3E-19 132.9 12.2 83 61-147 22-112 (114)
128 1nu4_A U1A RNA binding domain; 99.6 7E-15 2.4E-19 132.0 8.6 82 61-148 5-90 (97)
129 2mss_A Protein (musashi1); RNA 99.5 3.5E-15 1.2E-19 127.6 6.2 75 66-144 1-75 (75)
130 2dgu_A Heterogeneous nuclear r 99.5 3.7E-14 1.3E-18 129.0 13.3 77 62-149 9-85 (103)
131 1x4b_A Heterogeneous nuclear r 99.5 1.6E-14 5.6E-19 134.2 11.0 83 62-148 25-107 (116)
132 2cpj_A Non-POU domain-containi 99.5 1.4E-14 4.8E-19 130.8 10.1 79 61-148 12-90 (99)
133 2jvr_A Nucleolar protein 3; RN 99.5 9.3E-15 3.2E-19 135.7 9.1 79 61-146 25-104 (111)
134 1rk8_A CG8781-PA, CG8781-PA pr 99.5 1.5E-14 5.2E-19 143.2 11.1 85 61-148 69-153 (165)
135 1uaw_A Mouse-musashi-1; RNP-ty 99.5 4.7E-15 1.6E-19 127.2 6.1 76 65-144 1-76 (77)
136 2dnq_A RNA-binding protein 4B; 99.5 3.1E-14 1.1E-18 126.2 11.6 77 61-148 5-81 (90)
137 2e5j_A Methenyltetrahydrofolat 99.5 1.5E-14 5E-19 130.3 9.6 79 61-147 16-94 (97)
138 2jwn_A Embryonic polyadenylate 99.5 1.3E-14 4.6E-19 136.3 9.5 81 63-147 35-115 (124)
139 2dnp_A RNA-binding protein 14; 99.5 2.9E-14 9.8E-19 126.5 10.9 77 61-148 6-82 (90)
140 2jvo_A Nucleolar protein 3; nu 99.5 2.4E-14 8.1E-19 132.0 10.4 80 58-148 25-104 (108)
141 1x4c_A Splicing factor, argini 99.5 9.5E-14 3.2E-18 127.6 14.3 77 62-148 13-94 (108)
142 2cpy_A RNA-binding protein 12; 99.5 2.1E-14 7.1E-19 133.4 9.2 83 61-148 12-95 (114)
143 3lqv_A PRE-mRNA branch site pr 99.5 2.5E-14 8.5E-19 132.6 9.7 80 62-147 6-85 (115)
144 2krb_A Eukaryotic translation 99.5 8E-15 2.7E-19 127.5 5.9 73 64-141 1-80 (81)
145 2cqh_A IGF-II mRNA-binding pro 99.5 2.5E-14 8.4E-19 127.6 9.2 77 62-148 6-84 (93)
146 2xnq_A Nuclear polyadenylated 99.5 5E-14 1.7E-18 127.2 11.3 77 60-147 18-95 (97)
147 1x5p_A Negative elongation fac 99.5 1.3E-13 4.4E-18 124.1 13.9 76 62-148 13-88 (97)
148 2cpd_A Apobec-1 stimulating pr 99.5 1.6E-13 5.6E-18 123.8 14.1 77 61-148 12-90 (99)
149 2fc8_A NCL protein; structure 99.5 8.1E-14 2.8E-18 126.3 12.0 82 61-148 12-93 (102)
150 2hvz_A Splicing factor, argini 99.5 3.6E-14 1.2E-18 128.5 9.6 76 65-148 1-76 (101)
151 2cpx_A Hypothetical protein FL 99.5 3.9E-14 1.3E-18 131.2 9.5 85 61-148 22-106 (115)
152 1fj7_A Nucleolin RBD1, protein 99.5 6.3E-15 2.1E-19 133.5 4.0 81 63-148 16-96 (101)
153 1wg5_A Heterogeneous nuclear r 99.5 6.5E-14 2.2E-18 127.9 10.7 82 62-148 13-95 (104)
154 2xs2_A Deleted in azoospermia- 99.5 1.6E-14 5.4E-19 131.1 6.5 82 61-148 6-87 (102)
155 2ghp_A U4/U6 snRNA-associated 99.5 3.9E-14 1.3E-18 152.2 10.5 110 2-148 81-198 (292)
156 3q2s_C Cleavage and polyadenyl 99.5 1.8E-14 6.3E-19 150.5 7.4 82 63-147 67-150 (229)
157 1wel_A RNA-binding protein 12; 99.5 1.8E-14 6.2E-19 135.8 6.7 82 62-147 23-104 (124)
158 2cq2_A Hypothetical protein LO 99.5 3.6E-14 1.2E-18 132.0 8.5 78 62-148 23-107 (114)
159 2kvi_A Nuclear polyadenylated 99.5 3.9E-14 1.3E-18 127.3 8.4 78 61-149 7-85 (96)
160 2db1_A Heterogeneous nuclear r 99.5 5.5E-14 1.9E-18 131.6 9.6 81 62-147 15-98 (118)
161 2e5g_A U6 snRNA-specific termi 99.5 1.1E-13 3.9E-18 123.7 10.9 77 63-148 7-83 (94)
162 1wf1_A RNA-binding protein RAL 99.5 1.6E-13 5.5E-18 126.3 12.1 76 61-147 24-100 (110)
163 1fjc_A Nucleolin RBD2, protein 99.5 7.5E-14 2.5E-18 125.1 9.5 80 61-148 13-92 (96)
164 1wez_A HnRNP H', FTP-3, hetero 99.5 7.4E-14 2.5E-18 127.4 9.4 81 61-147 12-92 (102)
165 1wg1_A KIAA1579 protein, homol 99.5 1.3E-13 4.6E-18 121.8 10.7 76 63-148 4-79 (88)
166 3egn_A RNA-binding protein 40; 99.5 6.7E-14 2.3E-18 135.0 9.2 87 62-148 43-131 (143)
167 2lcw_A RNA-binding protein FUS 99.2 3.6E-15 1.2E-19 138.8 0.0 85 61-148 4-96 (116)
168 1sjr_A Polypyrimidine tract-bi 99.5 2E-13 6.9E-18 134.6 12.4 80 63-149 45-126 (164)
169 1iqt_A AUF1, heterogeneous nuc 99.5 1.9E-14 6.4E-19 122.8 4.4 75 66-144 1-75 (75)
170 3zzy_A Polypyrimidine tract-bi 99.5 1.7E-13 5.7E-18 130.4 11.3 79 63-149 27-108 (130)
171 2hgl_A HNRPF protein, heteroge 99.5 5.8E-14 2E-18 135.0 8.2 81 61-146 41-124 (136)
172 2f3j_A RNA and export factor b 99.5 7E-14 2.4E-18 140.4 9.1 84 61-148 85-168 (177)
173 2lmi_A GRSF-1, G-rich sequence 99.5 2.8E-14 9.6E-19 131.0 5.5 82 61-147 8-92 (107)
174 4f02_A Polyadenylate-binding p 99.5 1.5E-13 5E-18 141.5 11.0 81 63-146 14-94 (213)
175 2e44_A Insulin-like growth fac 99.5 1.2E-13 4E-18 123.8 9.0 80 62-148 13-93 (96)
176 3pgw_S U1-70K; protein-RNA com 99.5 3.3E-13 1.1E-17 153.8 14.5 85 62-149 100-184 (437)
177 3d2w_A TAR DNA-binding protein 99.5 2.2E-13 7.4E-18 121.1 10.1 75 61-147 8-84 (89)
178 2dnn_A RNA-binding protein 12; 99.4 2E-13 6.9E-18 126.2 9.8 78 63-146 15-92 (109)
179 1fxl_A Paraneoplastic encephal 99.4 2.9E-13 1E-17 131.9 11.2 80 64-146 2-81 (167)
180 2e5i_A Heterogeneous nuclear r 99.4 7.5E-13 2.6E-17 125.1 13.5 76 65-149 26-104 (124)
181 3tyt_A Heterogeneous nuclear r 99.4 3.1E-13 1.1E-17 138.8 11.2 80 62-149 2-82 (205)
182 1b7f_A Protein (SXL-lethal pro 99.4 2.6E-13 8.7E-18 132.8 10.1 82 63-147 2-83 (168)
183 2bz2_A Negative elongation fac 99.4 3E-13 1E-17 127.4 9.3 76 62-148 37-112 (121)
184 2diu_A KIAA0430 protein; struc 99.4 3.1E-13 1.1E-17 120.4 8.6 74 62-148 7-85 (96)
185 2j8a_A Histone-lysine N-methyl 99.4 2.4E-13 8.2E-18 127.8 7.6 79 65-146 3-95 (136)
186 3u1l_A PRE-mRNA-splicing facto 99.4 2.5E-13 8.7E-18 142.2 8.4 80 61-149 131-231 (240)
187 3pgw_A U1-A; protein-RNA compl 99.4 3.9E-12 1.3E-16 135.8 17.7 82 61-148 6-91 (282)
188 1l3k_A Heterogeneous nuclear r 99.4 7.9E-13 2.7E-17 132.8 10.7 83 61-147 10-92 (196)
189 2hzc_A Splicing factor U2AF 65 99.4 7.1E-13 2.4E-17 116.2 8.9 72 62-143 4-86 (87)
190 3beg_B Splicing factor, argini 99.4 7.5E-13 2.6E-17 123.2 8.9 74 63-146 15-93 (115)
191 2hgn_A Heterogeneous nuclear r 99.4 1.7E-13 6E-18 132.1 4.5 81 62-148 44-124 (139)
192 2dnl_A Cytoplasmic polyadenyla 99.4 9.5E-13 3.3E-17 122.2 8.5 77 63-145 7-86 (114)
193 2hgm_A HNRPF protein, heteroge 99.4 6.9E-13 2.4E-17 125.8 7.6 79 62-146 40-120 (126)
194 1wf0_A TDP-43, TAR DNA-binding 99.4 8.3E-13 2.8E-17 116.5 7.6 74 63-148 4-79 (88)
195 2dha_A FLJ20171 protein; RRM d 99.4 4.8E-13 1.7E-17 126.4 6.3 80 62-146 21-104 (123)
196 3md3_A Nuclear and cytoplasmic 99.4 2.1E-12 7.3E-17 125.6 10.8 79 65-147 1-79 (166)
197 2qfj_A FBP-interacting repress 99.3 1.7E-12 5.9E-17 132.3 9.4 81 63-146 27-107 (216)
198 2pe8_A Splicing factor 45; RRM 99.3 6.6E-12 2.3E-16 115.2 10.7 81 63-146 7-93 (105)
199 2cjk_A Nuclear polyadenylated 99.3 3.4E-12 1.2E-16 124.8 8.8 79 63-146 2-80 (167)
200 3nmr_A Cugbp ELAV-like family 99.3 4.3E-12 1.5E-16 124.7 9.4 82 63-147 2-88 (175)
201 2voo_A Lupus LA protein; RNA-b 99.3 7.5E-12 2.6E-16 127.3 10.2 80 63-147 108-187 (193)
202 1qm9_A Polypyrimidine tract-bi 99.2 3.5E-11 1.2E-15 121.5 13.0 77 64-148 3-80 (198)
203 2adc_A Polypyrimidine tract-bi 99.2 1E-11 3.5E-16 129.1 8.6 80 61-148 31-111 (229)
204 3sde_A Paraspeckle component 1 99.2 2.1E-11 7.2E-16 129.3 11.0 76 62-146 20-95 (261)
205 2dt7_B Splicing factor 3 subun 99.2 1.7E-12 6E-17 113.6 2.1 54 211-265 31-84 (85)
206 1fje_B Nucleolin RBD12, protei 99.2 3.5E-12 1.2E-16 126.0 4.4 82 61-147 10-91 (175)
207 2dit_A HIV TAT specific factor 99.2 4.2E-11 1.4E-15 110.7 11.4 79 62-147 13-102 (112)
208 2g4b_A Splicing factor U2AF 65 99.2 4.1E-11 1.4E-15 117.7 10.1 74 63-146 3-87 (172)
209 2yh0_A Splicing factor U2AF 65 99.2 8E-11 2.7E-15 118.3 11.7 76 63-148 3-89 (198)
210 3v4m_A Splicing factor U2AF 65 99.2 7.1E-11 2.4E-15 108.3 9.7 83 62-145 3-95 (105)
211 1jmt_A Splicing factor U2AF 35 99.2 1.5E-11 5E-16 112.6 4.8 72 69-144 20-103 (104)
212 3tht_A Alkylated DNA repair pr 99.1 4.1E-11 1.4E-15 131.8 7.9 78 61-147 15-99 (345)
213 2d9o_A DNAJ (HSP40) homolog, s 99.1 4.9E-10 1.7E-14 101.9 11.6 65 74-148 27-91 (100)
214 3ue2_A Poly(U)-binding-splicin 99.1 2.4E-10 8.2E-15 107.0 9.0 83 63-145 19-107 (118)
215 3clj_A Protein NRD1; CTD-inter 99.0 2.8E-10 9.6E-15 110.7 5.1 129 327-465 3-147 (157)
216 3s6e_A RNA-binding protein 39; 98.9 6.8E-09 2.3E-13 96.5 10.2 76 63-145 6-91 (114)
217 1x4p_A Putative splicing facto 98.8 6.7E-10 2.3E-14 89.6 -0.6 56 209-266 5-60 (66)
218 2dnr_A Synaptojanin-1; RRM dom 98.7 3.5E-08 1.2E-12 87.2 8.2 74 62-147 5-86 (91)
219 1owx_A Lupus LA protein, SS-B, 98.6 6.4E-08 2.2E-12 90.6 8.9 73 62-143 16-92 (121)
220 3dxb_A Thioredoxin N-terminall 98.4 3.2E-07 1.1E-11 94.6 7.4 70 76-145 141-211 (222)
221 1ufw_A Synaptojanin 2; RNP dom 98.4 4.6E-07 1.6E-11 80.5 6.1 72 61-144 12-92 (95)
222 4dgw_B PRE-mRNA-splicing facto 98.1 5E-07 1.7E-11 87.2 1.8 51 212-265 8-58 (152)
223 1wey_A Calcipressin 1; structu 97.8 5.2E-05 1.8E-09 68.5 8.3 77 64-149 5-86 (104)
224 2l9w_A U4/U6 snRNA-associated- 97.6 0.00027 9.1E-09 64.2 9.7 70 64-142 21-95 (117)
225 4f25_A Polyadenylate-binding p 97.5 3.1E-05 1.1E-09 71.3 2.0 62 2-80 45-113 (115)
226 2e62_A Protein AT5G25060; CWF2 97.5 0.00018 6.1E-09 57.9 5.9 53 697-749 9-61 (61)
227 2hvz_A Splicing factor, argini 96.1 0.0033 1.1E-07 55.8 3.7 58 2-74 37-101 (101)
228 1uw4_A UPF3X; nonsense mediate 95.1 0.14 4.8E-06 45.2 10.2 80 65-145 2-86 (91)
229 2dhx_A Poly (ADP-ribose) polym 94.9 0.35 1.2E-05 43.5 12.0 68 63-142 7-79 (104)
230 1whv_A Poly(A)-specific ribonu 94.8 0.032 1.1E-06 49.6 5.1 57 63-130 14-70 (100)
231 3lqv_A PRE-mRNA branch site pr 94.7 0.0041 1.4E-07 56.6 -0.9 56 2-90 47-109 (115)
232 1wwh_A Nucleoporin 35, nucleop 94.7 0.09 3.1E-06 48.6 8.0 70 63-143 23-93 (119)
233 1h1j_S THO1 protein; SAP domai 94.4 0.051 1.7E-06 42.7 4.8 40 515-554 4-43 (51)
234 3ctr_A Poly(A)-specific ribonu 94.4 0.036 1.2E-06 49.5 4.4 52 67-130 9-60 (101)
235 2kvu_A MKL/myocardin-like prot 94.2 0.051 1.8E-06 45.9 4.8 39 515-553 25-63 (75)
236 2do1_A Nuclear protein HCC-1; 92.4 0.15 5.3E-06 40.6 4.6 38 516-553 10-47 (55)
237 1zrj_A E1B-55KDA-associated pr 92.0 0.14 4.9E-06 40.0 3.9 37 515-551 9-45 (50)
238 2cpi_A CCR4-NOT transcription 91.8 0.11 3.7E-06 46.9 3.7 34 2-37 63-103 (111)
239 2diu_A KIAA0430 protein; struc 91.4 0.12 4.1E-06 45.9 3.4 33 2-36 46-85 (96)
240 4fxv_A ELAV-like protein 1; RN 91.1 0.071 2.4E-06 47.3 1.6 31 2-34 61-98 (99)
241 2lxi_A RNA-binding protein 10; 90.8 0.15 5.1E-06 44.4 3.4 33 2-36 44-84 (91)
242 2i2y_A Fusion protein consists 90.7 0.084 2.9E-06 50.2 1.8 40 106-146 10-50 (150)
243 2a3j_A U1 small nuclear ribonu 90.6 0.1 3.6E-06 48.7 2.4 33 1-35 71-110 (127)
244 2dgo_A Cytotoxic granule-assoc 90.6 0.23 7.7E-06 44.8 4.5 34 2-37 57-97 (115)
245 2cpd_A Apobec-1 stimulating pr 90.0 0.21 7E-06 43.8 3.7 34 1-36 50-90 (99)
246 2dgu_A Heterogeneous nuclear r 89.7 0.4 1.4E-05 42.3 5.4 35 1-37 44-85 (103)
247 2jvr_A Nucleolar protein 3; RN 89.7 0.13 4.4E-06 47.0 2.0 33 2-36 67-106 (111)
248 2cqi_A Nucleolysin TIAR; RNA r 89.4 0.26 9E-06 43.4 3.9 33 2-36 55-94 (103)
249 2fc9_A NCL protein; structure 89.2 0.29 1E-05 42.9 4.0 33 2-36 53-92 (101)
250 3p5t_L Cleavage and polyadenyl 89.2 0.11 3.9E-06 44.8 1.2 33 2-36 45-84 (90)
251 2dgx_A KIAA0430 protein; RRM d 89.1 0.22 7.4E-06 43.6 3.1 32 2-35 52-90 (96)
252 2cqb_A Peptidyl-prolyl CIS-tra 89.1 0.3 1E-05 42.9 4.1 33 2-36 54-93 (102)
253 2cqh_A IGF-II mRNA-binding pro 88.9 0.26 9E-06 42.5 3.4 32 2-35 44-83 (93)
254 1whw_A Hypothetical protein ri 88.5 0.39 1.3E-05 41.9 4.3 33 2-36 50-89 (99)
255 2dit_A HIV TAT specific factor 88.5 0.27 9.3E-06 44.3 3.4 32 2-35 64-102 (112)
256 2wbr_A GW182, gawky, LD47780P; 88.4 0.2 6.7E-06 44.0 2.2 30 2-33 43-79 (89)
257 2lkz_A RNA-binding protein 5; 88.4 0.2 6.7E-06 44.3 2.3 31 2-34 53-94 (95)
258 2kn4_A Immunoglobulin G-bindin 88.0 0.35 1.2E-05 46.1 4.0 38 93-135 2-39 (158)
259 2do0_A HnRNP M, heterogeneous 88.0 0.45 1.6E-05 42.6 4.5 32 2-35 56-94 (114)
260 1fjc_A Nucleolin RBD2, protein 87.9 0.25 8.4E-06 42.9 2.6 33 2-36 53-92 (96)
261 2dnz_A Probable RNA-binding pr 87.8 0.37 1.3E-05 41.6 3.7 33 2-36 47-86 (95)
262 1x5p_A Negative elongation fac 87.6 0.35 1.2E-05 42.2 3.4 32 2-35 49-87 (97)
263 2cpx_A Hypothetical protein FL 87.6 0.38 1.3E-05 43.2 3.8 33 2-36 67-106 (115)
264 3pq1_A Poly(A) RNA polymerase; 87.3 0.29 1E-05 55.5 3.4 54 65-127 54-107 (464)
265 2fc8_A NCL protein; structure 87.3 0.33 1.1E-05 42.6 3.1 33 2-36 54-93 (102)
266 2l08_A Regulator of nonsense t 87.2 1.3 4.5E-05 39.4 6.8 71 64-135 9-79 (97)
267 2pe8_A Splicing factor 45; RRM 87.2 0.22 7.4E-06 44.9 1.8 31 2-34 56-93 (105)
268 2dgw_A Probable RNA-binding pr 87.1 0.29 1E-05 42.0 2.6 31 2-35 50-87 (91)
269 3s8s_A Histone-lysine N-methyl 87.1 0.21 7.2E-06 45.2 1.7 32 2-35 48-86 (110)
270 1fj7_A Nucleolin RBD1, protein 87.0 0.34 1.2E-05 42.5 3.0 32 2-36 58-96 (101)
271 2d9p_A Polyadenylate-binding p 87.0 0.41 1.4E-05 42.1 3.6 33 2-36 55-94 (103)
272 1x4g_A Nucleolysin TIAR; struc 87.0 0.37 1.3E-05 43.0 3.2 33 2-36 61-100 (109)
273 1x5u_A Splicing factor 3B subu 86.9 0.41 1.4E-05 42.2 3.5 33 2-36 57-96 (105)
274 2dgt_A RNA-binding protein 30; 86.9 0.52 1.8E-05 40.5 4.1 34 1-36 43-83 (92)
275 2do4_A Squamous cell carcinoma 86.8 0.37 1.3E-05 42.2 3.1 32 2-35 58-96 (100)
276 2e5j_A Methenyltetrahydrofolat 86.7 0.35 1.2E-05 42.2 2.8 32 2-35 56-94 (97)
277 2dnq_A RNA-binding protein 4B; 86.6 0.49 1.7E-05 40.5 3.8 33 2-36 42-81 (90)
278 2cpf_A RNA binding motif prote 86.6 0.34 1.2E-05 42.2 2.7 33 2-36 50-89 (98)
279 3ns6_A Eukaryotic translation 86.6 0.28 9.5E-06 43.3 2.2 31 2-34 54-92 (100)
280 1x5t_A Splicing factor 3B subu 86.5 0.37 1.3E-05 41.7 2.9 33 2-36 48-87 (96)
281 1wg1_A KIAA1579 protein, homol 86.4 0.37 1.3E-05 41.3 2.8 31 2-34 40-77 (88)
282 2cq2_A Hypothetical protein LO 86.3 0.31 1.1E-05 44.7 2.4 33 2-36 63-107 (114)
283 2fy1_A RNA-binding motif prote 86.3 0.77 2.6E-05 41.7 5.1 33 2-36 48-87 (116)
284 3md1_A Nuclear and cytoplasmic 86.2 0.27 9.4E-06 41.2 1.9 32 2-35 43-81 (83)
285 3bs9_A Nucleolysin TIA-1 isofo 86.2 0.23 7.8E-06 42.1 1.3 32 2-35 48-86 (87)
286 1x5s_A Cold-inducible RNA-bind 86.1 0.39 1.3E-05 42.1 2.9 34 2-37 54-94 (102)
287 2rnn_A E3 SUMO-protein ligase 86.0 0.75 2.6E-05 42.0 4.7 43 512-554 33-75 (114)
288 2xnq_A Nuclear polyadenylated 86.0 0.32 1.1E-05 42.7 2.2 33 1-35 56-95 (97)
289 3s6e_A RNA-binding protein 39; 85.7 0.26 8.8E-06 45.2 1.5 31 2-34 55-92 (114)
290 2cpe_A RNA-binding protein EWS 85.7 0.48 1.6E-05 42.4 3.3 33 2-36 65-104 (113)
291 2cq3_A RNA-binding protein 9; 85.7 0.49 1.7E-05 41.6 3.3 33 2-36 55-94 (103)
292 2dng_A Eukaryotic translation 85.6 0.44 1.5E-05 41.9 3.0 32 2-36 56-94 (103)
293 2dnm_A SRP46 splicing factor; 85.5 0.46 1.6E-05 41.8 3.1 32 2-35 55-93 (103)
294 2kt5_A RNA and export factor-b 85.4 0.67 2.3E-05 42.3 4.2 32 2-35 76-114 (124)
295 1oo0_B CG8781-PA, drosophila Y 85.4 0.29 1E-05 43.6 1.7 33 2-36 68-107 (110)
296 2cph_A RNA binding motif prote 85.3 0.62 2.1E-05 41.1 3.9 33 2-36 58-98 (107)
297 4a8x_A RNA-binding protein wit 85.2 0.37 1.3E-05 40.8 2.2 32 2-35 47-85 (88)
298 2cpj_A Non-POU domain-containi 85.1 0.54 1.9E-05 41.0 3.3 32 2-35 51-89 (99)
299 3p3d_A Nucleoporin 53; structu 85.1 0.82 2.8E-05 42.9 4.6 78 65-144 8-96 (132)
300 2cqp_A RNA-binding protein 12; 85.0 0.34 1.1E-05 42.2 1.9 31 2-34 57-94 (98)
301 1x4h_A RNA-binding protein 28; 85.0 0.76 2.6E-05 40.8 4.3 32 2-35 57-101 (111)
302 2dis_A Unnamed protein product 85.0 0.7 2.4E-05 40.9 4.1 33 2-36 52-93 (109)
303 1why_A Hypothetical protein ri 85.0 0.46 1.6E-05 41.3 2.8 32 2-35 53-93 (97)
304 2dgs_A DAZ-associated protein 84.9 0.65 2.2E-05 40.5 3.7 32 2-36 52-90 (99)
305 2cq0_A Eukaryotic translation 84.8 0.44 1.5E-05 41.9 2.6 33 2-36 57-96 (103)
306 1nu4_A U1A RNA binding domain; 84.8 0.34 1.2E-05 42.0 1.8 32 2-35 51-89 (97)
307 2bz2_A Negative elongation fac 84.6 0.48 1.6E-05 43.6 2.8 32 2-35 73-111 (121)
308 2dhg_A TRNA selenocysteine ass 84.6 0.4 1.4E-05 42.2 2.2 32 2-35 51-90 (104)
309 2cpz_A CUG triplet repeat RNA- 84.5 0.5 1.7E-05 42.5 2.9 32 2-35 67-105 (115)
310 2dnp_A RNA-binding protein 14; 84.5 0.46 1.6E-05 40.7 2.5 33 1-35 42-81 (90)
311 2x1f_A MRNA 3'-END-processing 84.3 0.41 1.4E-05 41.6 2.1 33 2-36 44-83 (96)
312 1p27_B RNA-binding protein 8A; 84.1 0.37 1.3E-05 42.5 1.8 32 2-35 65-103 (106)
313 1u6f_A Tcubp1, RNA-binding pro 83.9 1 3.5E-05 41.8 4.9 33 2-36 84-123 (139)
314 1p1t_A Cleavage stimulation fa 83.9 0.46 1.6E-05 41.7 2.3 33 2-36 50-89 (104)
315 2dnh_A Bruno-like 5, RNA bindi 83.7 0.59 2E-05 41.2 2.9 33 2-36 56-98 (105)
316 2cqc_A Arginine/serine-rich sp 83.7 0.44 1.5E-05 41.0 2.1 31 2-34 57-94 (95)
317 2kvi_A Nuclear polyadenylated 83.6 0.39 1.3E-05 41.9 1.7 32 2-35 45-83 (96)
318 3v4m_A Splicing factor U2AF 65 83.4 0.38 1.3E-05 43.2 1.5 30 2-33 59-95 (105)
319 1wf1_A RNA-binding protein RAL 83.3 0.59 2E-05 41.7 2.8 32 2-35 62-100 (110)
320 2m2b_A RNA-binding protein 10; 83.3 0.83 2.8E-05 42.3 3.9 32 2-35 67-108 (131)
321 1x4a_A Splicing factor, argini 83.2 0.57 2E-05 41.7 2.6 32 2-35 61-99 (109)
322 2dgp_A Bruno-like 4, RNA bindi 83.0 0.78 2.7E-05 40.4 3.4 33 2-36 55-97 (106)
323 2jvo_A Nucleolar protein 3; nu 82.9 0.44 1.5E-05 42.8 1.8 32 2-35 65-103 (108)
324 1whx_A Hypothetical protein ri 82.9 0.47 1.6E-05 42.8 1.9 32 2-35 46-84 (111)
325 2div_A TRNA selenocysteine ass 82.8 0.49 1.7E-05 41.2 2.0 32 2-35 52-94 (99)
326 3mdf_A Peptidyl-prolyl CIS-tra 82.7 0.45 1.5E-05 40.0 1.7 29 2-32 49-84 (85)
327 2ek1_A RNA-binding protein 12; 82.6 0.4 1.4E-05 41.4 1.3 31 2-34 57-94 (95)
328 2dgv_A HnRNP M, heterogeneous 82.3 0.48 1.7E-05 40.6 1.7 32 2-35 48-86 (92)
329 1wi8_A EIF-4B, eukaryotic tran 82.2 0.69 2.4E-05 40.7 2.8 32 2-36 57-95 (104)
330 3ex7_B RNA-binding protein 8A; 82.0 0.57 2E-05 42.8 2.2 34 2-37 64-104 (126)
331 2nlw_A Eukaryotic translation 81.7 0.78 2.7E-05 40.7 2.9 32 2-34 61-99 (105)
332 2cqd_A RNA-binding region cont 81.5 1.3 4.4E-05 39.8 4.4 31 2-35 59-96 (116)
333 3n9u_C Cleavage and polyadenyl 80.9 0.49 1.7E-05 45.6 1.4 31 2-34 99-136 (156)
334 3ue2_A Poly(U)-binding-splicin 80.8 0.5 1.7E-05 43.5 1.3 31 2-34 71-108 (118)
335 2ywk_A Putative RNA-binding pr 80.7 0.54 1.8E-05 40.5 1.5 31 2-34 57-94 (95)
336 1wel_A RNA-binding protein 12; 80.3 0.6 2.1E-05 42.7 1.7 30 2-34 67-103 (124)
337 2j76_E EIF-4B, EIF4B, eukaryot 80.2 0.52 1.8E-05 41.4 1.2 30 2-34 61-97 (100)
338 1x4c_A Splicing factor, argini 79.9 0.93 3.2E-05 40.4 2.8 33 3-37 51-95 (108)
339 2ki2_A SS-DNA binding protein 79.0 0.56 1.9E-05 40.1 0.9 32 2-35 43-80 (90)
340 3ucg_A Polyadenylate-binding p 78.9 0.84 2.9E-05 38.7 2.1 30 2-34 48-84 (89)
341 1x4f_A Matrin 3; structural ge 78.4 1.2 4.1E-05 40.6 3.0 33 2-36 62-103 (112)
342 2lcw_A RNA-binding protein FUS 79.6 0.44 1.5E-05 43.0 0.0 32 2-35 57-95 (116)
343 3r27_A HnRNP L, heterogeneous 77.7 0.78 2.7E-05 41.0 1.5 31 2-34 57-96 (100)
344 1h2v_Z 20 kDa nuclear CAP bind 77.6 0.89 3.1E-05 43.2 2.0 33 2-36 81-120 (156)
345 2cq1_A PTB-like protein L; RRM 77.4 1.2 4.2E-05 39.6 2.8 33 2-36 51-92 (101)
346 2cq4_A RNA binding motif prote 77.3 0.38 1.3E-05 43.2 -0.6 31 2-35 67-104 (114)
347 2db1_A Heterogeneous nuclear r 77.3 0.85 2.9E-05 41.5 1.7 30 2-34 61-97 (118)
348 1wex_A Hypothetical protein (r 77.0 1.1 3.9E-05 40.0 2.4 33 2-36 51-92 (104)
349 2ad9_A Polypyrimidine tract-bi 76.7 1.4 4.8E-05 40.6 3.0 32 2-35 67-107 (119)
350 2mss_A Protein (musashi1); RNA 76.5 0.95 3.2E-05 37.1 1.6 28 2-32 41-75 (75)
351 1wez_A HnRNP H', FTP-3, hetero 76.4 1.2 4.1E-05 39.4 2.4 31 2-35 55-92 (102)
352 2dnn_A RNA-binding protein 12; 75.7 1.2 4.2E-05 40.1 2.3 30 2-34 56-92 (109)
353 2lmi_A GRSF-1, G-rich sequence 75.7 0.8 2.7E-05 40.8 1.0 30 2-34 55-91 (107)
354 2ytc_A PRE-mRNA-splicing facto 75.2 0.82 2.8E-05 38.4 0.9 29 2-32 48-84 (85)
355 1sjq_A Polypyrimidine tract-bi 74.8 0.99 3.4E-05 40.7 1.4 32 2-35 52-92 (105)
356 3q2s_C Cleavage and polyadenyl 74.5 0.97 3.3E-05 46.4 1.4 31 2-34 112-149 (229)
357 1s79_A Lupus LA protein; RRM, 74.4 1.1 3.6E-05 40.0 1.5 30 2-34 52-88 (103)
358 1x4d_A Matrin 3; structural ge 73.3 1.3 4.5E-05 39.6 1.8 32 2-35 52-92 (102)
359 2d9o_A DNAJ (HSP40) homolog, s 73.1 2.5 8.4E-05 37.6 3.6 31 2-36 54-91 (100)
360 1sjr_A Polypyrimidine tract-bi 72.5 1.8 6.2E-05 42.2 2.7 32 2-35 84-124 (164)
361 1x4e_A RNA binding motif, sing 71.9 0.54 1.8E-05 39.7 -1.1 28 2-31 47-81 (85)
362 1x4b_A Heterogeneous nuclear r 70.2 3.1 0.00011 37.2 3.6 31 2-35 69-106 (116)
363 2cpy_A RNA-binding protein 12; 69.7 1.9 6.7E-05 38.6 2.2 31 2-35 57-94 (114)
364 2hzc_A Splicing factor U2AF 65 69.2 1.5 5E-05 37.0 1.1 26 2-30 53-85 (87)
365 1jjr_A KU70, thyroid autoantig 69.2 3 0.0001 40.0 3.4 37 513-549 58-94 (151)
366 2krb_A Eukaryotic translation 69.0 1.5 5E-05 36.7 1.1 22 2-23 47-75 (81)
367 1wg5_A Heterogeneous nuclear r 68.9 2.8 9.6E-05 36.9 3.0 30 2-34 57-93 (104)
368 2dh8_A DAZ-associated protein 67.9 1.9 6.6E-05 37.8 1.7 31 2-35 58-95 (105)
369 1uaw_A Mouse-musashi-1; RNP-ty 67.4 2.4 8.3E-05 34.6 2.1 28 2-32 42-76 (77)
370 3zzy_A Polypyrimidine tract-bi 67.0 2.3 8E-05 39.8 2.1 34 2-35 65-106 (130)
371 2rs2_A Musashi-1, RNA-binding 66.0 3 0.0001 37.1 2.6 31 2-35 67-104 (109)
372 3beg_B Splicing factor, argini 64.9 3 0.0001 37.6 2.3 31 3-35 52-94 (115)
373 2e5i_A Heterogeneous nuclear r 63.1 3.6 0.00012 38.1 2.6 33 3-35 62-102 (124)
374 2hgn_A Heterogeneous nuclear r 61.2 2.1 7.2E-05 40.4 0.6 31 2-35 86-123 (139)
375 2dnr_A Synaptojanin-1; RRM dom 59.4 4.2 0.00014 35.7 2.1 30 2-34 49-85 (91)
376 3d45_A Poly(A)-specific ribonu 59.0 17 0.00057 41.7 7.8 54 65-130 441-494 (507)
377 3d2w_A TAR DNA-binding protein 53.8 4.7 0.00016 34.5 1.6 33 2-34 48-83 (89)
378 3s7r_A Heterogeneous nuclear r 53.7 5.2 0.00018 33.5 1.8 27 2-31 53-86 (87)
379 2dha_A FLJ20171 protein; RRM d 52.6 4.5 0.00015 37.2 1.3 30 2-34 68-104 (123)
380 2e44_A Insulin-like growth fac 50.8 8.9 0.0003 32.7 2.9 31 3-35 55-92 (96)
381 1iqt_A AUF1, heterogeneous nuc 50.0 5.1 0.00017 32.5 1.1 27 2-31 41-74 (75)
382 2cqg_A TDP-43, TAR DNA-binding 48.7 12 0.00041 32.4 3.4 30 2-35 57-93 (103)
383 1x5o_A RNA binding motif, sing 44.9 6.3 0.00022 34.9 1.0 22 2-23 66-94 (114)
384 2j8a_A Histone-lysine N-methyl 44.2 9.3 0.00032 35.9 2.0 32 2-35 48-96 (136)
385 1juq_A ADP-ribosylation factor 43.0 83 0.0028 30.5 8.8 84 355-448 45-129 (171)
386 2jwn_A Embryonic polyadenylate 42.3 9.7 0.00033 34.2 1.8 32 2-35 78-115 (124)
387 2e5g_A U6 snRNA-specific termi 42.1 9.6 0.00033 32.5 1.6 28 4-34 47-81 (94)
388 1mhq_A ADP-ribosylation factor 38.1 1.7E+02 0.0058 27.5 9.9 84 355-448 33-117 (148)
389 2xs2_A Deleted in azoospermia- 37.9 8.8 0.0003 33.2 0.7 30 2-35 50-86 (102)
390 1wf0_A TDP-43, TAR DNA-binding 37.8 17 0.00059 30.4 2.6 34 2-35 42-78 (88)
391 3zyq_A Hepatocyte growth facto 37.7 1.3E+02 0.0044 30.4 9.6 82 353-448 38-119 (226)
392 2dnl_A Cytoplasmic polyadenyla 36.0 12 0.00041 33.3 1.3 15 2-16 52-73 (114)
393 3tht_A Alkylated DNA repair pr 34.9 10 0.00035 41.3 0.8 20 2-21 56-82 (345)
394 1dvp_A HRS, hepatocyte growth 34.0 1.9E+02 0.0064 28.9 10.1 81 354-448 36-116 (220)
395 2rno_A Putative DNA-binding pr 30.2 58 0.002 28.8 4.6 38 514-551 15-52 (110)
396 3g2s_A C-terminal fragment of 30.2 3.1E+02 0.01 25.8 10.2 82 357-448 45-127 (149)
397 1x5b_A Signal transducing adap 29.0 2.3E+02 0.0079 27.0 9.3 75 355-448 47-126 (163)
398 1jjr_A KU70, thyroid autoantig 28.3 12 0.00042 35.8 0.0 35 515-549 114-148 (151)
399 2jak_A Serine/threonine-protei 27.6 3.7E+02 0.013 29.5 11.6 111 321-450 250-367 (392)
400 2do5_A Splicing factor 3B subu 27.5 64 0.0022 24.9 3.8 21 530-550 22-42 (58)
401 2jx3_A Protein DEK; alpha heli 27.3 33 0.0011 32.0 2.8 36 514-549 70-105 (131)
402 1ufw_A Synaptojanin 2; RNP dom 26.7 26 0.0009 30.9 1.8 28 4-34 60-94 (95)
403 2g0c_A ATP-dependent RNA helic 22.1 1.3E+02 0.0046 24.4 5.4 68 66-145 2-75 (76)
404 3ldz_A STAM-1, signal transduc 20.8 3.8E+02 0.013 24.7 8.9 71 357-447 39-114 (140)
No 1
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=99.93 E-value=7.6e-26 Score=219.49 Aligned_cols=130 Identities=17% Similarity=0.295 Sum_probs=118.6
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCCCchhhHHH
Q 003053 327 RDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTK 406 (852)
Q Consensus 327 ~~~l~~lL~~Lt~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~yr~~ 406 (852)
.+.|..+|+.|+.|+++|+.||.|||+|..+|.+||++|.++|....++..+||++|||+|||||||. +++++.|+.+
T Consensus 5 ~~~l~~kL~~L~~sq~sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk--~k~~~~f~~~ 82 (142)
T 2km4_A 5 SEQFTTKLNTLEDSQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAK--GQKIIQFQDS 82 (142)
T ss_dssp HHHHHHHHHTCCSCHHHHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHG--GGTCCHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHh--hcCchHHHHH
Confidence 47899999999999999999999999999999999999999998887788999999999999999997 6677899999
Q ss_pred HHhhhHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhccCccccHHHHHHHHHHhccC
Q 003053 407 FEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRS 466 (852)
Q Consensus 407 fe~~Lp~if~~l~~~~~~~~~r~~a~~~k~kv~~vL~iWe~~~vf~~~~l~~L~~~f~~~ 466 (852)
|+++||.+|.++. .. .+++.+++|.+||++|++|+||+.++|.+|++.|.+.
T Consensus 83 F~~~L~~~~~~~~---~~-----~~~~~~~kv~rvl~iWeer~vf~~~~i~~L~~~l~~~ 134 (142)
T 2km4_A 83 FGKVAAEVLGRIN---QE-----FPRDLKKKLSRVVNILKERNIFSKQVVNDIERSLAAA 134 (142)
T ss_dssp HHHTHHHHHHHHH---HH-----SCHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---Hc-----CCHHHHHHHHHHHHHhhccCCcCHHHHHHHHHHHHhH
Confidence 9999999996653 32 2478899999999999999999999999999998653
No 2
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=99.91 E-value=1.1e-24 Score=209.54 Aligned_cols=128 Identities=20% Similarity=0.380 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCCCchhhHH
Q 003053 326 QRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRT 405 (852)
Q Consensus 326 ~~~~l~~lL~~Lt~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~yr~ 405 (852)
..+.|+.+|+.|++|+++|+++|.|||+|..+|.+||++|.++|.... ..+||++|||||||||||. ++++.|+.
T Consensus 5 ~~~~l~~~L~~L~~s~~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~--~~~KL~~LYLindIl~ns~---~~~~~y~~ 79 (135)
T 4fu3_A 5 SESALEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAK--SNRKLTFLYLANDVIQNSK---RKGPEFTR 79 (135)
T ss_dssp CHHHHHHHHHHCCSSTTHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSC--TTTHHHHHHHHHHHHHHHT---TTCSHHHH
T ss_pred CHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHH---hcCHHHHH
Confidence 357899999999999999999999999999999999999999997554 5799999999999999995 45678999
Q ss_pred HHHhhhHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhccCccccHHHHHHHHHHhccC
Q 003053 406 KFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRS 466 (852)
Q Consensus 406 ~fe~~Lp~if~~l~~~~~~~~~r~~a~~~k~kv~~vL~iWe~~~vf~~~~l~~L~~~f~~~ 466 (852)
.|+++||.+|.++... .+++++++|.+||++|++|.||++++|.+|+..|.+.
T Consensus 80 ~f~~~l~~~~~~~~~~--------~~~~~k~kl~kll~iW~~r~vf~~~~i~~L~~~l~~~ 132 (135)
T 4fu3_A 80 EFESVLVDAFSHVARE--------ADEGCKKPLERLLNIWQERSVYGGEFIQQLKLSMEDS 132 (135)
T ss_dssp HHHTTHHHHHHHHHHH--------HHTTSSHHHHHHHHHHHHTTSSCHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHhCC
Confidence 9999999999775422 2356789999999999999999999999999998654
No 3
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=99.91 E-value=1.1e-24 Score=208.94 Aligned_cols=126 Identities=18% Similarity=0.372 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCCCchhhH
Q 003053 325 SQRDEFEDMLRALTLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYR 404 (852)
Q Consensus 325 ~~~~~l~~lL~~Lt~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~yr 404 (852)
...+.|+.+|+.|++|+++|+.++.|||+|..+|.+||++|.++|.. ++.++||++|||+|||||||. +++++.|+
T Consensus 5 ~~e~~l~~~L~~L~~s~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~--~~~~~KL~~LYL~ndIl~ns~--~~~~~~f~ 80 (132)
T 4flb_A 5 ALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRR--SAYPHRLNLFYLANDVIQNCK--RKNAIIFR 80 (132)
T ss_dssp HHHHHHHHHHHHCCSSHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTT--TTTCTHHH
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CChhhHHHHHHHHHHHHHHhc--ccChHHHH
Confidence 45688999999999999999999999999999999999999999864 457899999999999999997 77889999
Q ss_pred HHHHhhhHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhccCccccHHHHHHHHHHhcc
Q 003053 405 TKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLR 465 (852)
Q Consensus 405 ~~fe~~Lp~if~~l~~~~~~~~~r~~a~~~k~kv~~vL~iWe~~~vf~~~~l~~L~~~f~~ 465 (852)
..|+++||.+|.++ ..++++++|.+||++|++|.|||+++|.+|++.+..
T Consensus 81 ~~f~~~l~~~~~~~-----------~~~~~~~kl~~ll~iW~~r~vf~~~~i~~L~~~L~~ 130 (132)
T 4flb_A 81 ESFADVLPEAAALV-----------KDPSVSKSVERIFKIWEDRNVYPEEMIVALREALST 130 (132)
T ss_dssp HHHHTTHHHHHHTT-----------CSTTTHHHHHHHHHHHHHHTSSCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHh-----------CCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHhc
Confidence 99999999998643 245789999999999999999999999999998753
No 4
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=99.83 E-value=5.1e-22 Score=171.98 Aligned_cols=72 Identities=29% Similarity=0.527 Sum_probs=68.0
Q ss_pred CcccccCCCCcchhhHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccccccCCCCCccceeeeeeecccCCcc
Q 003053 199 PDIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTL 270 (852)
Q Consensus 199 ~~v~v~~P~d~~~~~~Id~~a~~V~~~G~~FE~~~~~~~~~np~f~FL~d~~~~~h~YYrwkl~~~~~gd~~ 270 (852)
+.+.|.||.|++++.+||+||.||+++|++||++||+++++||+|+||+|..|++|.||+|+|+++.+|+..
T Consensus 5 ~~~~v~pP~d~~~~~iIdktA~fVaknG~~fE~~l~~~~~~Np~F~FL~d~~~~~h~YYr~kl~e~~~g~~~ 76 (78)
T 1x4o_A 5 SSGKVSPPEDEEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSFLYDPNSQGYRYYRQKLDEFRKSGPS 76 (78)
T ss_dssp CCSCSCCCSCHHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHCSSTTTTTCSSSSHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCcCcCCHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCCCCCCeecCCCCCCCcHHHHHHHHHHHhcCCC
Confidence 456789999999999999999999999999999999999999999999999999999999999999998753
No 5
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1
Probab=99.80 E-value=3.6e-21 Score=170.29 Aligned_cols=71 Identities=35% Similarity=0.604 Sum_probs=67.3
Q ss_pred cccccCCCCcchhhHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccccccCCCCCccceeeeeeecccCCcc
Q 003053 200 DIMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTL 270 (852)
Q Consensus 200 ~v~v~~P~d~~~~~~Id~~a~~V~~~G~~FE~~~~~~~~~np~f~FL~d~~~~~h~YYrwkl~~~~~gd~~ 270 (852)
.+.|.||.|+.++.+||+||.||+++|++||++||+++++||+|+||++..+++|.||+|+|+++.+|++.
T Consensus 16 ~v~v~pP~d~~~~~iIdktA~fVaknG~~FE~~l~~~e~~NpkF~FL~~~~~~~h~YYr~kl~e~~~g~~~ 86 (88)
T 1ug0_A 16 EIKVSPPEGAETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDKNSREFLYYRRKVAEIRKSGPS 86 (88)
T ss_dssp TSCCSSGGGHHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCSSSHHHHCSSCHHHHHHHHHHHHHHHSCCS
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCCCCCCeecCCCCCCCcHHHHHHHHHHHccCCC
Confidence 46788999999999999999999999999999999999999999999977899999999999999999864
No 6
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=155.64 Aligned_cols=83 Identities=22% Similarity=0.387 Sum_probs=78.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
-.++++|||+|||+++|+++|+++|++||.|.+|+|++ |..+|+++|||||+|.+.++|++|+..|||..|+|+.|+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~---d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 92 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIR---DKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIK 92 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE---CSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeee---cCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34578999999999999999999999999999999994 778899999999999999999999999999999999999
Q ss_pred EeeccC
Q 003053 141 IGWGKS 146 (852)
Q Consensus 141 V~~ak~ 146 (852)
|.||+|
T Consensus 93 V~~AkP 98 (99)
T 4fxv_A 93 VSYARP 98 (99)
T ss_dssp EEECCB
T ss_pred EEEeeC
Confidence 999975
No 7
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=99.74 E-value=8.7e-18 Score=162.92 Aligned_cols=127 Identities=16% Similarity=0.302 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHhcc-cCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCCCchhh
Q 003053 325 SQRDEFEDMLRALT-LERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAY 403 (852)
Q Consensus 325 ~~~~~l~~lL~~Lt-~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~y 403 (852)
+..++|...|..|+ .++..|+.++.||++|..+|..||++|.+++.. ++..+||..|||++||++||. ..|
T Consensus 7 ~~~~~f~~~L~~L~~nSk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k--~~p~~KL~~LYL~DsIvkN~g------~~y 78 (144)
T 1sz9_A 7 VIVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEK--CMPKQKLYAFYALDSICKNVG------SPY 78 (144)
T ss_dssp HHHHHHHHHHTTCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTC------TTH
T ss_pred HHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCHhhHHHHHHHHHHHHHhcc------chH
Confidence 45688999999998 999999999999999999999999999999964 568899999999999999985 359
Q ss_pred HHHHHhhhHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhccC-----ccccHHHHHHHHHHhccCC
Q 003053 404 RTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDW-----FLFSDAYVNGLRATFLRSG 467 (852)
Q Consensus 404 r~~fe~~Lp~if~~l~~~~~~~~~r~~a~~~k~kv~~vL~iWe~~-----~vf~~~~l~~L~~~f~~~~ 467 (852)
...|+..|+.+|.+ +|..+ .+..|.+|.+||++|+++ .|||+++|..|++.+....
T Consensus 79 ~~~F~~~l~~~f~~---~~~~~-----d~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l~~a~ 139 (144)
T 1sz9_A 79 TIYFSRNLFNLYKR---TYLLV-----DNTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLIKAS 139 (144)
T ss_dssp HHHHHTTHHHHHHH---HHHTS-----CHHHHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHH---HHHhC-----CHHHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHhhh
Confidence 99999999999965 45433 479999999999999999 9999999999999876543
No 8
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.73 E-value=2.8e-17 Score=165.79 Aligned_cols=137 Identities=13% Similarity=0.205 Sum_probs=108.7
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCcceEEEcCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPG-SFDDGDPQTTNLYVGNLS 73 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~-~~~~~~~~~~tLfVgnLp 73 (852)
||||||.|. |+ .|+|..+.++ +|++.++............... ..++ .........++|||+|||
T Consensus 51 ~g~afV~F~~~~~A~~Al-~l~g~~~~g~--~i~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~v~nl~ 123 (198)
T 2yh0_A 51 KNFAFLEFRSVDETTQAM-AFDGIIFQGQ--SLKIRRPHDYQPLPGMSENPSV----YVPGVVSTVVPDSAHKLFIGGLP 123 (198)
T ss_dssp TTEEEEEESCSHHHHHHG-GGTTEEETTE--EEEEECCCCCCCCCCSSSCSSC----CCTTSSCCCSSCCCCEEEEECCC
T ss_pred CCEEEEEeCCHHHHHHHH-HhcCCEEcCc--eEEEeCCCCCCCCCCCcCCCcC----CCCCCccCCCCCCCCEEEEeCCC
Confidence 799999994 88 8999999999 9999887654222111100000 0011 111223467899999999
Q ss_pred CCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccCCC
Q 003053 74 PQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 148 (852)
Q Consensus 74 ~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~~ 148 (852)
..+++++|+++|++||.|..|+|+. +..+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|.|+++..
T Consensus 124 ~~~~~~~l~~~f~~~G~v~~~~~~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 124 NYLNDDQVKELLTSFGPLKAFNLVK---DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp TTCCHHHHHHHHHTBSCEEEEEEEE---CTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCHHHHHHHHHHcCCccEEEEee---cCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999999984 66688999999999999999999999999999999999999998753
No 9
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.8e-17 Score=161.91 Aligned_cols=119 Identities=27% Similarity=0.449 Sum_probs=105.1
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
+|||||.|. |+..|+|..+.+. ++.+.++..... ......++|||+|||.
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~--~i~v~~~~~~~~---------------------~~~~~~~~l~v~nl~~ 97 (166)
T 3md3_A 41 VNYAFVEYHQSHDANIALQTLNGKQIENN--IVKINWAFQSQQ---------------------SSSDDTFNLFVGDLNV 97 (166)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEECCCCCC---------------------CCCTTCEEEEEESCCT
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCccCCC--eeEEEEcCCCCC---------------------CCCCCCceEEECCCCC
Confidence 699999994 9999999999998 888888655311 1123567999999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccC
Q 003053 75 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 146 (852)
Q Consensus 75 ~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~ 146 (852)
.+++++|+++|++||.|..+.++. +..+|.++|||||+|.+.++|.+|+..|||..++|+.|+|.||+.
T Consensus 98 ~~t~~~l~~~f~~~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 98 NVDDETLRNAFKDFPSYLSGHVMW---DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp TCCHHHHHHHHTTSTTEEEEEEEE---CTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCHHHHHHHHhccCCeeEEEEEe---cCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 999999999999999999999984 667889999999999999999999999999999999999999863
No 10
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.72 E-value=1.7e-17 Score=162.67 Aligned_cols=85 Identities=27% Similarity=0.409 Sum_probs=79.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||+.+++++|+++|++||.|..|+|+. +..+|+++|||||+|.+.++|++|+..|||..|+|+.|+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 143 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR---DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 143 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCC---CSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee---cCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34578999999999999999999999999999999984 667899999999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 144 v~~a~~~~ 151 (158)
T 2kn4_A 144 VQMARYGR 151 (158)
T ss_dssp EEEECCSS
T ss_pred EEECCCCC
Confidence 99998753
No 11
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-18 Score=153.08 Aligned_cols=66 Identities=30% Similarity=0.499 Sum_probs=58.2
Q ss_pred ccccCCCCcchhhHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccccccCCCCCccceeeeeeecccCCcc
Q 003053 201 IMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTL 270 (852)
Q Consensus 201 v~v~~P~d~~~~~~Id~~a~~V~~~G~~FE~~~~~~~~~np~f~FL~d~~~~~h~YYrwkl~~~~~gd~~ 270 (852)
+.|++| +++++.+||+||+||+++|++||++||++ +||+|+||++ ++++|.||+|||+++.+|+..
T Consensus 15 ~~ii~P-Ppdir~iIdktA~fVaknG~~FE~~i~~k--~np~F~FL~~-~~pyh~YY~~kl~e~~~~~~~ 80 (90)
T 2e5z_A 15 AAIIPP-PPDVQPVIDKLAEYVARNGLKFETSVRAK--NDQRFEFLQP-WHQYNAYYEFKKQFFLQKEGG 80 (90)
T ss_dssp CSCCCC-CTTTHHHHHHHHHHHHHSCHHHHHHHHHH--CCGGGCTTSS-SCSTHHHHHHHHHHHHHHTCC
T ss_pred CCccCC-CHHHHHHHHHHHHHHHHccHHHHHHHHHh--CCCCceeCCC-CCcccHHHHHHHHHHHhccCC
Confidence 444444 46799999999999999999999999997 8999999994 899999999999999998754
No 12
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.71 E-value=5.5e-18 Score=173.37 Aligned_cols=131 Identities=12% Similarity=0.218 Sum_probs=106.1
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
||||||.|. |++.|+|..+.++ +|.+.++.......... ..........++|||+|||.
T Consensus 70 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~--~l~v~~~~~~~~~~~~~------------~~~~~~~~~~~~l~v~nlp~ 135 (216)
T 2qfj_A 70 KGFAFVEYEVPEAAQLALEQMNSVMLGGR--NIKVGRPSNIGQAQPII------------DQLAEEARAFNRIYVASVHQ 135 (216)
T ss_dssp CSEEEEEESSHHHHHHHHHHHSSCCCC-C--CCEEECCSCCGGGHHHH------------HHHHHHHTTSCEEEEECCCT
T ss_pred CceEEEEeCCHHHHHHHHHHccCCeeCCe--eEEEecCCCccccchhh------------hhhhcccCCCcEEEEeCCCC
Confidence 799999994 9999999999998 88887655432110000 00000123467999999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccCCCC
Q 003053 75 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVAL 149 (852)
Q Consensus 75 ~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~~~ 149 (852)
.+++++|+++|++||.|..|+|+. +..+|+++|||||+|.+.++|.+|+..|||..|+|+.|+|.|+++.+.
T Consensus 136 ~~t~~~l~~~f~~~G~v~~v~i~~---~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 136 DLSDDDIKSVFEAFGKIKSATLAR---DPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp TCCHHHHHHHHTTSSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred cCCHHHHHHHHhccCCeeEEEEEe---cCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCC
Confidence 999999999999999999999984 667889999999999999999999999999999999999999987643
No 13
>2e60_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.6e-18 Score=155.49 Aligned_cols=68 Identities=22% Similarity=0.353 Sum_probs=63.2
Q ss_pred ccccCCCCcchhhHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccccccCCCCCccceeeeeeecccCCc
Q 003053 201 IMVIPPEDRHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDT 269 (852)
Q Consensus 201 v~v~~P~d~~~~~~Id~~a~~V~~~G~~FE~~~~~~~~~np~f~FL~d~~~~~h~YYrwkl~~~~~gd~ 269 (852)
..|.+|.|.+++.|||+||.||+++|++||++||+++++||+|+||+ .+|++|.||+|+|+++.+|+.
T Consensus 17 ~~v~~P~~~~~~~iI~ktA~fVarnG~~FE~~l~~re~~Np~F~FL~-~~~~~h~YY~~kl~~~~~g~~ 84 (101)
T 2e60_A 17 SDVELPPTAKMHAIIERTASFVCRQGAQFEIMLKAKQARNSQFDFLR-FDHYLNPYYKFIQKAMKEGRY 84 (101)
T ss_dssp SSSCCCSSHHHHHHHHHHHHHHHHSCHHHHHHHHHHTTSCSTTGGGS-TTSTHHHHHHHHHHHHHHTSC
T ss_pred CCccCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHccccCCCCccCC-CCCCCcHHHHHHHHHHHcCCC
Confidence 34667778899999999999999999999999999999999999995 799999999999999999875
No 14
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.70 E-value=4.7e-17 Score=160.43 Aligned_cols=114 Identities=14% Similarity=0.288 Sum_probs=100.4
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
||||||.|. |+ .|+|..+.++ ++.+.++.... .....++|||+|||.
T Consensus 51 ~g~afV~f~~~~~A~~A~-~~~~~~~~g~--~i~v~~~~~~~-----------------------~~~~~~~l~v~nlp~ 104 (172)
T 2g4b_A 51 KNFAFLEFRSVDETTQAM-AFDGIIFQGQ--SLKIRRPHDYQ-----------------------PLPGAHKLFIGGLPN 104 (172)
T ss_dssp TTEEEEEESSHHHHHHHG-GGTTCEETTE--ECEEECCSSCC-----------------------CCTTTTCEEEECCCT
T ss_pred CCEEEEEeCCHHHHHHHH-HhCCcEecCc--eeeecCCcccC-----------------------CCCCCCEEEEEcCCC
Confidence 799999993 88 8999999998 88887643311 012367899999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeec
Q 003053 75 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 144 (852)
Q Consensus 75 ~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~a 144 (852)
.+++++|+++|++||.|..|.|+. +..+|.++|||||+|.+.++|.+|+..|||..++|+.|+|.||
T Consensus 105 ~~t~~~l~~~f~~~G~v~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 105 YLNDDQVKELLTSFGPLKAFNLVK---DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEE---CTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred cCCHHHHHHHHHhcCCceEEEEEe---cCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 999999999999999999999984 6678899999999999999999999999999999999999997
No 15
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=99.68 E-value=4.4e-18 Score=141.95 Aligned_cols=60 Identities=32% Similarity=0.567 Sum_probs=56.8
Q ss_pred chhhHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccccccCCCCCccceeeeeeecccCCcc
Q 003053 210 HLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTL 270 (852)
Q Consensus 210 ~~~~~Id~~a~~V~~~G~~FE~~~~~~~~~np~f~FL~d~~~~~h~YYrwkl~~~~~gd~~ 270 (852)
+++.|||+||.||+++|++||++||+++++||+|+||++ .+++|.||+|+|+++.+|++.
T Consensus 2 ~i~~iI~ktA~fVarnG~~fE~~l~~~e~~np~F~FL~~-~~~~h~YY~~~l~~~~~g~~~ 61 (64)
T 2dt6_A 2 EVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNP-NDPYHAYYRHKVSEFKEGKAQ 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHCTHHHHHHHHHSTTCGGGGGGST-TSTTHHHHHHHHHHHHHTCSC
T ss_pred hHHHHHHHHHHHHHHcCHHHHHHHHHhccCCCCcccCCC-CCCCchHHHHHHHHHHcCCCC
Confidence 578999999999999999999999999999999999995 899999999999999999763
No 16
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=147.50 Aligned_cols=83 Identities=14% Similarity=0.221 Sum_probs=78.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
.+..++|||+|||+.+++++|+++|++||.|.+|+|++ |..+|+++|||||+|.+.++|++|+..|||..|+|+.|+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~---d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~ 79 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILL---HPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIH 79 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEE---CCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34578999999999999999999999999999999994 778899999999999999999999999999999999999
Q ss_pred EeeccC
Q 003053 141 IGWGKS 146 (852)
Q Consensus 141 V~~ak~ 146 (852)
|.|+..
T Consensus 80 V~~a~~ 85 (110)
T 3s8s_A 80 AQLDIK 85 (110)
T ss_dssp EEECST
T ss_pred EEECCC
Confidence 999864
No 17
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=1.4e-16 Score=156.21 Aligned_cols=115 Identities=23% Similarity=0.345 Sum_probs=101.7
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
||||||.| .|+..|+|..+.++ ++.+.++.+... ....++|||+|||.
T Consensus 45 ~g~afV~f~~~~~A~~a~~~l~~~~~~g~--~l~v~~~~~~~~-----------------------~~~~~~l~v~nl~~ 99 (168)
T 1b7f_A 45 YGYAFVDFTSEMDSQRAIKVLNGITVRNK--RLKVSYARPGGE-----------------------SIKDTNLYVTNLPR 99 (168)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEECCCCSS-----------------------TTTTCEEEEESCCT
T ss_pred ceEEEEEECCHHHHHHHHHhcCCCEeCCc--EEEEEecCCCcc-----------------------cCCCCCEEEeCCCC
Confidence 68999999 48999999999988 888887654211 12457999999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecC--eEEEEeec
Q 003053 75 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE--YELKIGWG 144 (852)
Q Consensus 75 ~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G--~~l~V~~a 144 (852)
.+++++|+++|++||.|..+.++. +..+|.++|||||+|.+.++|.+|+..|||..+.| ++|+|.||
T Consensus 100 ~~t~~~l~~~f~~~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 100 TITDDQLDTIFGKYGSIVQKNILR---DKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCCHHHHHHHHTSSSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCHHHHHHhhhcCCcEEEEEEEE---cCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 999999999999999999999984 56678899999999999999999999999999988 99999986
No 18
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.68 E-value=5.3e-16 Score=143.99 Aligned_cols=88 Identities=22% Similarity=0.481 Sum_probs=80.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 60 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
.....++|||+|||..+++++|+++|++||.|..|+|++ +..++.++|||||+|.+.++|++|+..|||..|.|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVK---DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345678999999999999999999999999999999984 66688999999999999999999999999999999999
Q ss_pred EEeeccCCCCC
Q 003053 140 KIGWGKSVALP 150 (852)
Q Consensus 140 ~V~~ak~~~~p 150 (852)
+|.|+++....
T Consensus 88 ~V~~a~~~~~~ 98 (115)
T 2dgo_A 88 RTNWATRKPPA 98 (115)
T ss_dssp EEEESSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999876543
No 19
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=9e-17 Score=165.56 Aligned_cols=118 Identities=23% Similarity=0.417 Sum_probs=100.5
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
||||||.|. |+..|++..+.++ ++++.++...... .....++|||+|||+
T Consensus 57 ~G~afV~F~~~~~A~~Ai~~~~~~~~~g~--~i~~~~~~~~~~~---------------------~~~~~~~l~v~nl~~ 113 (213)
T 4f02_A 57 LGYAYVNFQQPADAERALDTMNFDVIKGK--PVRIMWSQRDPSL---------------------RKSGVGNIFIKNLDK 113 (213)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEECCCCTHH---------------------HHHCTTEEEEESCCT
T ss_pred cccccceeCCHHHHHHHHHHhhhhhcCCc--ccccccccccccc---------------------cccccccceECCccc
Confidence 699999994 9999999999998 8877765442110 011346899999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccCC
Q 003053 75 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSV 147 (852)
Q Consensus 75 ~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~ 147 (852)
.+|+++|+++|++||.|..|+|++ + .+.++|||||+|.+.++|++|+..|||..|+|+.|+|.|+++.
T Consensus 114 ~~t~~~l~~~F~~~G~i~~~~i~~---d--~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 114 SIDNKALYDTFSAFGNILSCKVVC---D--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEE---E--TTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ccHHHHHHHHHhhcCCeEEEEeec---c--CCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 999999999999999999999984 3 3447899999999999999999999999999999999999764
No 20
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=2.3e-16 Score=156.20 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=98.8
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
||||||.|. |+ +|+|..+.++ +|++.++..... ......++|||+|||.
T Consensus 54 ~g~afV~f~~~~~a~~A~-~l~g~~~~g~--~l~v~~~~~~~~---------------------~~~~~~~~l~v~nlp~ 109 (175)
T 1fje_B 54 RKFGYVDFESAEDLEKAL-ELTGLKVFGN--EIKLEKPKGRDS---------------------KKVRAARTLLAKNLSF 109 (175)
T ss_dssp TTEEEEEESSHHHHHHHH-HGGGEEETTE--EEEEECCCCSSC---------------------STTGGGGEEEEESCCS
T ss_pred ccEEEEEECCHHHHHHHH-hcCCCEeCCe--EEEEecCCCccc---------------------cccccCCEEEEeCCCC
Confidence 799999994 88 6999999998 898888765311 1123578999999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccCC
Q 003053 75 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSV 147 (852)
Q Consensus 75 ~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~ 147 (852)
.+++++|+++|++||.|..+ . .+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|.|++++
T Consensus 110 ~~t~~~l~~~F~~~g~v~~~--~------~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 110 NITEDELKEVFEDALEIRLV--S------QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp SCCHHHHHHHCTTCSEEEEE--C------SSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CCCHHHHHHHHHhcCeEEEe--c------CCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 99999999999999988766 2 36789999999999999999999999999999999999999865
No 21
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.66 E-value=3.5e-16 Score=136.24 Aligned_cols=81 Identities=36% Similarity=0.625 Sum_probs=76.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEee
Q 003053 64 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 143 (852)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ 143 (852)
+++|||+|||..+++++|+++|++||.|.+|+|++ +..+|.++|||||+|.+.++|++|+..|||..++|+.|+|.|
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 77 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW---DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 77 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEE---CTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEE---cCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEe
Confidence 46899999999999999999999999999999984 667889999999999999999999999999999999999999
Q ss_pred ccCC
Q 003053 144 GKSV 147 (852)
Q Consensus 144 ak~~ 147 (852)
+++.
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 9865
No 22
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.66 E-value=7.9e-17 Score=143.97 Aligned_cols=82 Identities=13% Similarity=0.235 Sum_probs=75.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhC-CceecCeEEEE
Q 003053 64 TTNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ-GVVVYEYELKI 141 (852)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~fG-~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ln-G~~l~G~~l~V 141 (852)
+.+|||+|||+++|+++|+++|++|| .|.+|+|+ .|..+|.++|||||+|.+.++|++|++.|+ +..++|+.|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~---~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLM---RNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSS---SCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEE---ecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEE
Confidence 46899999999999999999999999 79999998 478899999999999999999999999874 56799999999
Q ss_pred eeccCCC
Q 003053 142 GWGKSVA 148 (852)
Q Consensus 142 ~~ak~~~ 148 (852)
.||++.+
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9998754
No 23
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.66 E-value=2.9e-16 Score=137.97 Aligned_cols=83 Identities=23% Similarity=0.514 Sum_probs=75.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
+..++|||+|||..+++++|+++|++||.|.+|+|+. +..+|.++|||||+|.+.++|++|+..|||..++|+.|+|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 80 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVK---DMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 80 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3568999999999999999999999999999999984 6678899999999999999999999999999999999999
Q ss_pred eeccCC
Q 003053 142 GWGKSV 147 (852)
Q Consensus 142 ~~ak~~ 147 (852)
.|++++
T Consensus 81 ~~a~~k 86 (87)
T 3bs9_A 81 NWATRK 86 (87)
T ss_dssp EEEC--
T ss_pred EecCCC
Confidence 999865
No 24
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=2.4e-16 Score=153.95 Aligned_cols=115 Identities=17% Similarity=0.313 Sum_probs=100.7
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
||||||.| .|+..|+|..+.+. ++.+.++.+... ....++|||+|||.
T Consensus 44 ~g~afV~f~~~~~A~~a~~~l~~~~~~g~--~l~v~~~~~~~~-----------------------~~~~~~l~v~nl~~ 98 (167)
T 1fxl_A 44 LGYGFVNYIDPKDAEKAINTLNGLRLQTK--TIKVSYARPSSA-----------------------SIRDANLYVSGLPK 98 (167)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEECCCCCG-----------------------GGTTCEEEEESCCT
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCccCCc--eEEEEecCCCcc-----------------------cCCCCcEEECCCCC
Confidence 59999999 49999999999988 888887654211 12357899999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeE--EEEeec
Q 003053 75 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE--LKIGWG 144 (852)
Q Consensus 75 ~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~--l~V~~a 144 (852)
.+++++|+++|++||.|..++++. +..+|.++|||||+|.+.++|.+|+..|||..++|+. |+|.||
T Consensus 99 ~~t~~~l~~~f~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 99 TMTQKELEQLFSQYGRIITSRILV---DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred cCCHHHHHHHHHhcCCEeEEEEEe---cCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 999999999999999999999984 6668889999999999999999999999999999964 899886
No 25
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.65 E-value=2e-16 Score=154.06 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=99.8
Q ss_pred CcceEehhh-------hHHhhh-cceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCC
Q 003053 1 MRSFSFFLF-------SFFNAW-HVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNL 72 (852)
Q Consensus 1 ~r~f~F~~f-------~A~~~m-~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnL 72 (852)
|+||+++.| +|+.+| +|..+.+ ++.+.++........... . .............++|||+||
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G---~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~~~~~~~l~V~nl 81 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG---EWTYDDATKTFTVTEGSH----H---HHHHMHRDSCPLDCKVYVGNL 81 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC---EEEEETTTTEEEEECSSS----S---CCCCSCSSSSTTSCEEEEESC
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC---ceecccccCccccccccc----c---ccccccccCCCCCCEEEEeCC
Confidence 579998666 489999 9988866 677776554211100000 0 001111223456789999999
Q ss_pred CCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccCC
Q 003053 73 SPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSV 147 (852)
Q Consensus 73 p~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~ 147 (852)
|+.+|+++|+++|++||.|.+|+|+. + ++|||||+|.+.++|+.|+..|||..|+|+.|+|.|+++.
T Consensus 82 ~~~~t~~~l~~~F~~~G~i~~v~i~~---~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 82 GNNGNKTELERAFGYYGPLRSVWVAR---N-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp CSCCSCHHHHHHHHHHSCEEEEEECS---S-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCCHHHHHHHHHhhCCEEEEEEee---C-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 99999999999999999999999984 2 6899999999999999999999999999999999999864
No 26
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.65 E-value=3.4e-16 Score=145.89 Aligned_cols=80 Identities=28% Similarity=0.509 Sum_probs=73.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
..++|||+|||+.+|+++|+++|++||.|.+|+|+. + .+.++|||||+|.+.++|++|+..|||..|+|+.|+|.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~---d--~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~ 78 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC---D--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 78 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---E--TTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEee---c--CCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 467999999999999999999999999999999984 3 34578999999999999999999999999999999999
Q ss_pred eccCC
Q 003053 143 WGKSV 147 (852)
Q Consensus 143 ~ak~~ 147 (852)
|+++.
T Consensus 79 ~a~~~ 83 (115)
T 4f25_A 79 RFKSR 83 (115)
T ss_dssp ESSCC
T ss_pred ECCCc
Confidence 99764
No 27
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=8.4e-16 Score=137.17 Aligned_cols=83 Identities=22% Similarity=0.466 Sum_probs=77.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 60 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
..+..++|||+|||..+++++|+++|++||.|..|+|+. +..++.++|||||+|.+.++|++|+..|||..|.|+.|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMK---DKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECC---CSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEe---CCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 345678999999999999999999999999999999984 66788999999999999999999999999999999999
Q ss_pred EEeecc
Q 003053 140 KIGWGK 145 (852)
Q Consensus 140 ~V~~ak 145 (852)
+|.|||
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999986
No 28
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=7.9e-16 Score=138.81 Aligned_cols=85 Identities=22% Similarity=0.292 Sum_probs=79.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
...++|||+|||..+++++|+++|++||.|..|+|+. +..++.++|||||+|.+.++|++|+..|||..|.|+.|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPI---DSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 82 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCC---CTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEe---cCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4578999999999999999999999999999999984 6678899999999999999999999999999999999999
Q ss_pred eeccCCCC
Q 003053 142 GWGKSVAL 149 (852)
Q Consensus 142 ~~ak~~~~ 149 (852)
.|+++...
T Consensus 83 ~~a~~~~~ 90 (99)
T 1whw_A 83 LPSTIKKE 90 (99)
T ss_dssp EECCCCST
T ss_pred EEcCCCcc
Confidence 99987643
No 29
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.65 E-value=1e-15 Score=163.71 Aligned_cols=78 Identities=27% Similarity=0.478 Sum_probs=71.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceec-CeEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-EYEL 139 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~-G~~l 139 (852)
.+.+++|||+|||..+++++|+++|++||.|.+|+|+. + .+|||||+|.+.++|.+|+..|||..|. |+.|
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~---~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 275 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP---G-----RHDIAFVEFDNEVQAGAARDALQGFKITQNNAM 275 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec---C-----CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEE
Confidence 44678899999999999999999999999999999983 1 2589999999999999999999999999 9999
Q ss_pred EEeeccC
Q 003053 140 KIGWGKS 146 (852)
Q Consensus 140 ~V~~ak~ 146 (852)
+|.|+|.
T Consensus 276 ~v~~akk 282 (282)
T 3pgw_A 276 KISFAKK 282 (282)
T ss_pred EEEEecC
Confidence 9999973
No 30
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=99.65 E-value=2.9e-16 Score=152.56 Aligned_cols=130 Identities=15% Similarity=0.282 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhc-----ccCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCC-C
Q 003053 326 QRDEFEDMLRAL-----TLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVK-N 399 (852)
Q Consensus 326 ~~~~l~~lL~~L-----t~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~-n 399 (852)
..++|+..|..| ..++.+|+.++.||++|..++..||++|.+.+... +..+||..|||+|||++|+..... .
T Consensus 3 ~v~~f~~~L~~L~~~k~~~S~~~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~--~~~~KL~~LYL~DsIvrn~~~k~~~~ 80 (145)
T 3d9j_A 3 AVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKC--KPEYKVPGLYVIDSIVRQSRHQFGQE 80 (145)
T ss_dssp HHHHHHHHHHGGGGSCSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHS--CGGGHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CccceeehhhhhHHHHHHhhhhcCCc
Confidence 468899999999 45789999999999999999999999999999654 578999999999999999973110 1
Q ss_pred chhhHHHHHhhhHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhccCccccHHHHHHHHHHhccC
Q 003053 400 ASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRS 466 (852)
Q Consensus 400 a~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~a~~~k~kv~~vL~iWe~~~vf~~~~l~~L~~~f~~~ 466 (852)
...|...|...|+.+|.+ +|. + .++.+.+|.+||++|+++.|||+++|..|+..+..+
T Consensus 81 ~~~f~~~F~~~L~~~f~~---~~~-~-----~~~~r~kl~rLl~iW~~r~vF~~~~l~~l~~~l~~~ 138 (145)
T 3d9j_A 81 KDVFAPRFSNNIISTFQN---LYR-C-----PGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAAL 138 (145)
T ss_dssp TCSHHHHHHHHHHHHHHH---HTS-S-----CGGGHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHHHH---HHh-C-----CHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCc
Confidence 236999999999998853 442 1 258899999999999999999999999999987643
No 31
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.64 E-value=1.9e-16 Score=142.98 Aligned_cols=80 Identities=11% Similarity=0.353 Sum_probs=74.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHhccCCC--eeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCc----eecCe
Q 003053 64 TTNLYVGNLSPQVDENFLLRTFGRFGP--IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV----VVYEY 137 (852)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~fG~--I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~----~l~G~ 137 (852)
-.||||+|||+.+|+++|+++|++||. |.+|+|+ .|+.+|+++|||||+|.+.++|++|++.|||. .|+|+
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~---~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLI---KDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECC---CCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEE---ecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 458999999999999999999999995 6789888 48889999999999999999999999999997 58999
Q ss_pred EEEEeeccC
Q 003053 138 ELKIGWGKS 146 (852)
Q Consensus 138 ~l~V~~ak~ 146 (852)
+|.|.||++
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999985
No 32
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=9.2e-16 Score=137.18 Aligned_cols=84 Identities=23% Similarity=0.467 Sum_probs=78.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
+..++|||+|||..+++++|+++|++||.|..|+|+. +..+++++|||||+|.+.++|++|+..|||..|.|+.|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 79 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMK---DSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 79 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEC---CSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEee---cCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 4578999999999999999999999999999999994 6678999999999999999999999999999999999999
Q ss_pred eeccCCC
Q 003053 142 GWGKSVA 148 (852)
Q Consensus 142 ~~ak~~~ 148 (852)
.|+++..
T Consensus 80 ~~a~~~~ 86 (95)
T 2dnz_A 80 GHVTERL 86 (95)
T ss_dssp EESSCCC
T ss_pred EEccccc
Confidence 9998754
No 33
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.64 E-value=4.9e-16 Score=135.95 Aligned_cols=82 Identities=29% Similarity=0.489 Sum_probs=76.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
.+..++|||+|||+.+++++|+++|++||.|..|.|+. +..++.++|||||+|.+.++|++|+..|||..++|+.|+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 80 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPL---DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 80 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCE---ETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEE---CCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34678999999999999999999999999999999984 667889999999999999999999999999999999999
Q ss_pred Eeecc
Q 003053 141 IGWGK 145 (852)
Q Consensus 141 V~~ak 145 (852)
|.||+
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99986
No 34
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.64 E-value=1.2e-15 Score=141.63 Aligned_cols=86 Identities=27% Similarity=0.438 Sum_probs=79.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 60 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
..+..++|||+|||..+++++|+++|++||.|..|+|++ +..+++++|||||+|.+.++|++|+..|||..|.|+.|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFI---DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEE---CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 345678999999999999999999999999999999984 66789999999999999999999999999999999999
Q ss_pred EEeeccCCC
Q 003053 140 KIGWGKSVA 148 (852)
Q Consensus 140 ~V~~ak~~~ 148 (852)
+|.|+++..
T Consensus 98 ~V~~a~~~~ 106 (115)
T 2cpz_A 98 KVQLKRSKN 106 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEEcCCCC
Confidence 999998754
No 35
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.64 E-value=4.8e-16 Score=167.15 Aligned_cols=124 Identities=19% Similarity=0.317 Sum_probs=102.6
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
||||||.| .|+..|+|..+.+. +|.+.++.+....... .......++|||+|||.
T Consensus 159 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~a~~~~~~~~~----------------~~~~~~~~~l~v~nlp~ 220 (292)
T 2ghp_A 159 RRFAYIDVTSKEDARYCVEKLNGLKIEGY--TLVTKVSNPLEKSKRT----------------DSATLEGREIMIRNLST 220 (292)
T ss_dssp CCEEEEECSSHHHHHHHHHHHTTCEETTE--ECEEEECCCC-------------------------CCTTTEEEEEEECT
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEeCCc--EEEEEECCCCcccccc----------------cccCCCCceEEEECCCc
Confidence 79999999 49999999999998 8888887653211100 11234578999999999
Q ss_pred C-CCHHHHHHHhccCCCeeEEEEeccCCccc-cCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccCC
Q 003053 75 Q-VDENFLLRTFGRFGPIASVKIMWPRTEEE-RRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSV 147 (852)
Q Consensus 75 ~-vte~~L~~~F~~fG~I~~vki~~pr~d~~-tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~ 147 (852)
. +++++|+++|++||.|..|+|+. +.. ||.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.|++++
T Consensus 221 ~~~t~~~l~~~F~~~G~v~~v~i~~---~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 221 ELLDENLLRESFEGFGSIEKINIPA---GQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEECCS---CCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred ccCCHHHHHHHHhccCCeeEEEEEe---cCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9 99999999999999999999984 443 5899999999999999999999 99999999999999999875
No 36
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=137.71 Aligned_cols=84 Identities=19% Similarity=0.423 Sum_probs=77.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||..+++++|+++|++||.|..|+|+. +..++.++|||||+|.+.++|++|+. |||..|+|+.|+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIY---DAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECC---CTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---CCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 34578999999999999999999999999999999984 67788999999999999999999998 999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 83 V~~a~~~~ 90 (99)
T 2dgs_A 83 VKRAEPRD 90 (99)
T ss_dssp EEECCCCC
T ss_pred EEECCCCc
Confidence 99998754
No 37
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.9e-15 Score=140.51 Aligned_cols=87 Identities=22% Similarity=0.368 Sum_probs=79.6
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 60 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
.+...++|||+|||..+++++|+++|++||.|..|+|+. +..+++++|||||+|.+.++|++|+..||+ .|.|+.|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l 88 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVIT---DRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKA 88 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESC---CSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEE---cCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEE
Confidence 345678999999999999999999999999999999984 677899999999999999999999999998 8999999
Q ss_pred EEeeccCCCCC
Q 003053 140 KIGWGKSVALP 150 (852)
Q Consensus 140 ~V~~ak~~~~p 150 (852)
+|.|+++...+
T Consensus 89 ~V~~a~~~~~~ 99 (116)
T 2cqd_A 89 NVNLAYLGAKP 99 (116)
T ss_dssp EEEESTTTCCC
T ss_pred EEEEcccCCCc
Confidence 99999876543
No 38
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.7e-16 Score=139.31 Aligned_cols=85 Identities=28% Similarity=0.477 Sum_probs=79.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||..+++++|+++|++||.|..|+|+. +..++.++|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPL---DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCC---CSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34678999999999999999999999999999999984 667889999999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 86 V~~a~~~~ 93 (102)
T 2cqb_A 86 VNLAKPMR 93 (102)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 99998754
No 39
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-15 Score=138.74 Aligned_cols=85 Identities=22% Similarity=0.379 Sum_probs=79.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||..+++++|+++|++||.|..|+|+. +..++.++|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAK---DKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEE---CSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEee---cCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 44678999999999999999999999999999999984 667889999999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 89 v~~a~~~~ 96 (103)
T 2cq0_A 89 VEWAKPST 96 (103)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99998754
No 40
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.64 E-value=6.1e-16 Score=155.67 Aligned_cols=123 Identities=19% Similarity=0.241 Sum_probs=98.1
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
||||||.|. |++. ++..+.+. ++.+.++....... ........++|||+|||.
T Consensus 55 ~g~afV~f~~~~~A~~A~~~-~~~~~~g~--~l~v~~~~~~~~~~-----------------~~~~~~~~~~l~V~nLp~ 114 (196)
T 1l3k_A 55 RGFGFVTYATVEEVDAAMNA-RPHKVDGR--VVEPKRAVSREDSQ-----------------RPGAHLTVKKIFVGGIKE 114 (196)
T ss_dssp EEEEEEEESSHHHHHHHHHT-CSCEETTE--ECEEEECCC----------------------------CCSEEEEECCTT
T ss_pred cceEEEEeCCHHHHHHHHhc-CCCEECCE--EeeeecccCccccc-----------------ccccCCCcceEEEeCCCC
Confidence 689999994 6655 78888888 88887765532110 011123467999999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccCCC
Q 003053 75 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 148 (852)
Q Consensus 75 ~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~~ 148 (852)
.+|+++|+++|++||.|..|+|+. +..+|.++|||||+|.+.++|.+|+.. +|..|+|+.|.|.|+.+..
T Consensus 115 ~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 115 DTEEHHLRDYFEQYGKIEVIEIMT---DRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQ 184 (196)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC---
T ss_pred CCCHHHHHHHHhcCCCeEEEEEee---cCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChh
Confidence 999999999999999999999994 667889999999999999999999986 8999999999999998764
No 41
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.63 E-value=1.2e-16 Score=142.20 Aligned_cols=81 Identities=15% Similarity=0.180 Sum_probs=71.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFG--PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG--~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
.+|||+|||..+|+++|+++|++|| .|.+|+|+. +..+|+++|||||+|.+.++|++|++.|||..|+|+.|+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~---~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFE---NRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEE---CTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEe---cCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEE
Confidence 4799999999999999999999999 999999994 77899999999999999999999999999999999999999
Q ss_pred eccCCC
Q 003053 143 WGKSVA 148 (852)
Q Consensus 143 ~ak~~~ 148 (852)
++.+.+
T Consensus 79 ~~~~~~ 84 (90)
T 3p5t_L 79 PSNKLE 84 (90)
T ss_dssp CC----
T ss_pred ECCCCc
Confidence 987653
No 42
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=9.8e-16 Score=137.93 Aligned_cols=84 Identities=23% Similarity=0.329 Sum_probs=77.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccc---cCCcccEEEEEECCHHHHHHHHHHhCCceecCeE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEE---RRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 138 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~---tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~ 138 (852)
+..++|||+|||..+++++|+++|++||.|..|+|+. +.. ++.++|||||+|.+.++|++|+..|||..|.|+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISK---KKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK 79 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE---EECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 4578999999999999999999999999999999985 443 5689999999999999999999999999999999
Q ss_pred EEEeeccCCC
Q 003053 139 LKIGWGKSVA 148 (852)
Q Consensus 139 l~V~~ak~~~ 148 (852)
|+|.|+++..
T Consensus 80 l~V~~a~~~~ 89 (98)
T 2cpf_A 80 LEVRISERAT 89 (98)
T ss_dssp CEEECSSCSS
T ss_pred EEEEEccCCC
Confidence 9999998754
No 43
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=135.64 Aligned_cols=83 Identities=30% Similarity=0.434 Sum_probs=77.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
.+..++|||+|||..+++++|+++|++||.|..|+|++ +..++.++|||||+|.+.++|++|+..|||..|+|+.|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVY---DQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEE---CSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEE---cCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44678999999999999999999999999999999984 677889999999999999999999999999999999999
Q ss_pred EeeccC
Q 003053 141 IGWGKS 146 (852)
Q Consensus 141 V~~ak~ 146 (852)
|.|++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999875
No 44
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.6e-16 Score=141.73 Aligned_cols=81 Identities=12% Similarity=0.167 Sum_probs=73.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCC--ceecCeE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG--VVVYEYE 138 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG--~~l~G~~ 138 (852)
++..++|||+|||+.+|+++|+++|++||.|.+|+|+. .+|||||+|.+.++|+.|+..|++ ..|.|++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~---------~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~ 83 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK---------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 83 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc---------CCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 45678999999999999999999999999999999993 379999999999999999998864 7899999
Q ss_pred EEEeeccCCCCC
Q 003053 139 LKIGWGKSVALP 150 (852)
Q Consensus 139 l~V~~ak~~~~p 150 (852)
|+|.|+++..+.
T Consensus 84 l~V~~A~~~~~~ 95 (105)
T 1sjq_A 84 IYIQFSNHKELK 95 (105)
T ss_dssp CCBCCCSSSSCC
T ss_pred EEEEEcCCCCCC
Confidence 999999877653
No 45
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.8e-15 Score=136.90 Aligned_cols=84 Identities=14% Similarity=0.279 Sum_probs=77.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||..+++++|+++|++||.|..|+|+. +. +|+++|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVT---NR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE---CT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEE---CC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34578999999999999999999999999999999984 44 789999999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 90 v~~a~~~~ 97 (100)
T 2do4_A 90 VAISNSGP 97 (100)
T ss_dssp EEECCCCS
T ss_pred EEECCCCC
Confidence 99998653
No 46
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7e-16 Score=140.93 Aligned_cols=84 Identities=14% Similarity=0.281 Sum_probs=78.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
..+++|||+|||..+++++|+++|++||.|..|.|+. +..+|.++|||||+|.+.++|++|+..|||..|+|+.|+|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNL---DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEe---cCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 4578999999999999999999999999999999984 6778999999999999999999999999999999999999
Q ss_pred eeccCCC
Q 003053 142 GWGKSVA 148 (852)
Q Consensus 142 ~~ak~~~ 148 (852)
.|+++.+
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9998754
No 47
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.63 E-value=1e-15 Score=137.50 Aligned_cols=82 Identities=20% Similarity=0.421 Sum_probs=77.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEee
Q 003053 64 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 143 (852)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ 143 (852)
+++|||+|||..+++++|+++|++||.|..|+|+. +..+|.++|||||+|.+.++|++|+..|||..++|+.|+|.|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 78 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMF---DPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGY 78 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCB---CTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEe---CCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 57999999999999999999999999999999984 667889999999999999999999999999999999999999
Q ss_pred ccCCC
Q 003053 144 GKSVA 148 (852)
Q Consensus 144 ak~~~ 148 (852)
+++..
T Consensus 79 a~~~~ 83 (96)
T 2x1f_A 79 SSNSD 83 (96)
T ss_dssp CSCSS
T ss_pred cCCCC
Confidence 98754
No 48
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.5e-15 Score=138.12 Aligned_cols=84 Identities=17% Similarity=0.292 Sum_probs=76.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
...+++|||+|||..+++++|+++|++||.|..|+|+. +. +|.++|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILE---DK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE---CT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 34578999999999999999999999999999999984 43 588999999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|++...
T Consensus 88 v~~a~~~~ 95 (114)
T 2do0_A 88 VKMDERAL 95 (114)
T ss_dssp EEECSCCC
T ss_pred EEEcccCC
Confidence 99997643
No 49
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.63 E-value=1.3e-15 Score=142.29 Aligned_cols=83 Identities=27% Similarity=0.537 Sum_probs=77.3
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
..++|||+|||.++++++|+++|++||.|..|.|+. +. +|.++|||||+|.+.++|++|+..|||..|.|+.|+|.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIK---DR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEEC---ST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEE---CC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 467999999999999999999999999999999994 44 88999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 003053 143 WGKSVAL 149 (852)
Q Consensus 143 ~ak~~~~ 149 (852)
|+++...
T Consensus 82 ~a~~~~~ 88 (116)
T 2fy1_A 82 QAKKPSF 88 (116)
T ss_dssp ECCCSSC
T ss_pred ECCCCCC
Confidence 9987543
No 50
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.62 E-value=9.5e-16 Score=138.52 Aligned_cols=82 Identities=17% Similarity=0.293 Sum_probs=77.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCc
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIAS--------VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 132 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~--------vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~ 132 (852)
.+..++|||+|||..+++++|+++|++||.|.. |+|+. +..+|+++|||||+|.+.++|++|+..|||.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~---~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYT---DRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEE---CTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEe---cCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 456789999999999999999999999999999 99984 6778999999999999999999999999999
Q ss_pred eecCeEEEEeecc
Q 003053 133 VVYEYELKIGWGK 145 (852)
Q Consensus 133 ~l~G~~l~V~~ak 145 (852)
.|.|+.|+|.||+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999985
No 51
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.62 E-value=1.3e-15 Score=140.46 Aligned_cols=87 Identities=26% Similarity=0.507 Sum_probs=80.0
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCe
Q 003053 58 DDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 137 (852)
Q Consensus 58 ~~~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~ 137 (852)
....+..++|||+|||..+++++|+++|++||.|..|+|+. +..+|.++|||||+|.+.++|++|+..|||..|+|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMM---DSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEE---ETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 33455678999999999999999999999999999999984 667889999999999999999999999999999999
Q ss_pred EEEEeeccCC
Q 003053 138 ELKIGWGKSV 147 (852)
Q Consensus 138 ~l~V~~ak~~ 147 (852)
.|+|.|+++.
T Consensus 97 ~l~V~~a~~k 106 (108)
T 2jrs_A 97 PMKVGHVTER 106 (108)
T ss_dssp CCEEECSCSS
T ss_pred EEEEEEcccC
Confidence 9999999865
No 52
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.62 E-value=2.5e-15 Score=140.04 Aligned_cols=83 Identities=29% Similarity=0.428 Sum_probs=77.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 60 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
..+..++|||+|||.++++++|+++|++||.|..|+|+. +..+|+++|||||+|.+.++|++|++.|||..|+|+.|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFI---DKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECC---CSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---CCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 455678999999999999999999999999999999984 66789999999999999999999999999999999999
Q ss_pred EEeecc
Q 003053 140 KIGWGK 145 (852)
Q Consensus 140 ~V~~ak 145 (852)
+|.|+|
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999985
No 53
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=136.51 Aligned_cols=84 Identities=25% Similarity=0.524 Sum_probs=78.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEE-EEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASV-KIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~v-ki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
...++|||+|||..+++++|+++|++||.|..| +|++ +..+|.++|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 79 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMR---DPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPIT 79 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECC---CTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEE---cCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 357899999999999999999999999999999 9984 667899999999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 80 v~~a~~~~ 87 (96)
T 1x5t_A 80 VSYAFKKD 87 (96)
T ss_dssp EEESCCCC
T ss_pred EEEecccC
Confidence 99998754
No 54
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=138.85 Aligned_cols=84 Identities=27% Similarity=0.390 Sum_probs=78.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
...++|||+|||..+++++|+++|++||.|..|.|+. +..++.++|||||+|.+.++|++|+..|||..|.|+.|+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPR---EPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCB---CSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---CCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 4578999999999999999999999999999999984 6778899999999999999999999999999999999999
Q ss_pred eeccCCC
Q 003053 142 GWGKSVA 148 (852)
Q Consensus 142 ~~ak~~~ 148 (852)
.|+++..
T Consensus 88 ~~a~~~~ 94 (103)
T 2dnm_A 88 QVARYGR 94 (103)
T ss_dssp EECSSCC
T ss_pred EECCcCC
Confidence 9998754
No 55
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=154.44 Aligned_cols=136 Identities=17% Similarity=0.226 Sum_probs=103.3
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCCCCCC------CCCCCCCC----CCCCC--CCCCCCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPSSRFD------ELPDDFDP----SGKLP--GSFDDGDP 62 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~------~~p~~~~~----~~~~~--~~~~~~~~ 62 (852)
||||||.|. |+..|+|..+.+. ++.+.++......... .....+.. ....+ .......+
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~--~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 118 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHGK--PIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFP 118 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSSC--CCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecCe--EEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCC
Confidence 799999994 9999999999998 9999887654211000 00000000 00000 11112234
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceec-CeEEE
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-EYELK 140 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG-~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~-G~~l~ 140 (852)
.+++|||+|||..+++++|+++|++|| .|..|+|+. ..+|||||+|.+.++|.+|+..|||..++ |+.|+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~--------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 190 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ--------KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLR 190 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESS--------TTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEe--------CCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEE
Confidence 578999999999999999999999999 999999973 24799999999999999999999999999 99999
Q ss_pred EeeccCC
Q 003053 141 IGWGKSV 147 (852)
Q Consensus 141 V~~ak~~ 147 (852)
|.|+++.
T Consensus 191 v~~a~~~ 197 (198)
T 1qm9_A 191 VSFSKST 197 (198)
T ss_dssp EEEECCC
T ss_pred EEeeccc
Confidence 9999864
No 56
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=8.7e-16 Score=138.53 Aligned_cols=85 Identities=25% Similarity=0.418 Sum_probs=78.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCee-EEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeE--
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIA-SVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE-- 138 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~-~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~-- 138 (852)
...++|||+|||..+++++|+++|++||.|. +|+|++ +..+|+++|||||+|.+.++|++|+..|||..|.|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIR---NRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEE---CSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEee---cCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 4578999999999999999999999999999 999994 6778999999999999999999999999999999999
Q ss_pred --EEEeeccCCCC
Q 003053 139 --LKIGWGKSVAL 149 (852)
Q Consensus 139 --l~V~~ak~~~~ 149 (852)
|+|.|+++...
T Consensus 84 ~~l~v~~a~~~~~ 96 (99)
T 2div_A 84 KRFKLNYATYSGP 96 (99)
T ss_dssp EECCEEETTCCSS
T ss_pred eeEEEeecCCCCC
Confidence 99999987543
No 57
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.3e-15 Score=137.66 Aligned_cols=85 Identities=22% Similarity=0.448 Sum_probs=79.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCc-cccCCcccEEEEEECCHHHHHHHHHHh-CCceecCeE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTE-EERRRQRNCGFVAFMNRADGQAAKDEM-QGVVVYEYE 138 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d-~~tg~~rg~gFV~F~~~~~A~~Ai~~l-nG~~l~G~~ 138 (852)
+...++|||+|||..+++++|+++|++||.|..|+|+. + ..++.++|||||+|.+.++|++|+..| ||..|.|+.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPK---KMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCC---CCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEec---CCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 45678999999999999999999999999999999984 5 568899999999999999999999999 999999999
Q ss_pred EEEeeccCCC
Q 003053 139 LKIGWGKSVA 148 (852)
Q Consensus 139 l~V~~ak~~~ 148 (852)
|+|.|+++..
T Consensus 89 l~v~~a~~~~ 98 (107)
T 2cph_A 89 LVLEWADSEV 98 (107)
T ss_dssp CEEEECCCCC
T ss_pred EEEEeCCCCC
Confidence 9999998754
No 58
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.62 E-value=1.7e-15 Score=157.76 Aligned_cols=136 Identities=18% Similarity=0.234 Sum_probs=103.4
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCCCCC------CCCCCCCCCC----CCCC--CCCCCCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPSSRF------DELPDDFDPS----GKLP--GSFDDGDP 62 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~------~~~p~~~~~~----~~~~--~~~~~~~~ 62 (852)
||||||.|. |++.|+|..+.++ +|++.++........ ......+... ...+ .......+
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~--~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGK--PIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFP 149 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSS--BCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCe--EEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCC
Confidence 799999994 8999999999998 999988765421100 0000000000 0000 01112234
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceec-CeEEE
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY-EYELK 140 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG-~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~-G~~l~ 140 (852)
.+++|||+|||..+++++|+++|++|| .|..|+|+. .++|||||+|.+.++|.+|+..|||..++ |+.|+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~--------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~ 221 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ--------KDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLR 221 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS--------SSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE--------CCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEE
Confidence 578999999999999999999999999 999999973 25799999999999999999999999999 99999
Q ss_pred EeeccCC
Q 003053 141 IGWGKSV 147 (852)
Q Consensus 141 V~~ak~~ 147 (852)
|.|+++.
T Consensus 222 v~~a~~~ 228 (229)
T 2adc_A 222 VSFSKST 228 (229)
T ss_dssp EEECSSC
T ss_pred EEEecCC
Confidence 9999864
No 59
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.62 E-value=3.3e-16 Score=150.32 Aligned_cols=84 Identities=27% Similarity=0.425 Sum_probs=78.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
...++|||+|||..+|+++|+++|++||.|..|+|+. +..+++++|||||+|.+.++|++|+..|||..|.|+.|+|
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR---DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCC---CSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3568999999999999999999999999999999984 6678899999999999999999999999999999999999
Q ss_pred eeccCCC
Q 003053 142 GWGKSVA 148 (852)
Q Consensus 142 ~~ak~~~ 148 (852)
.|+++..
T Consensus 122 ~~a~~~~ 128 (135)
T 2lea_A 122 QMARYGR 128 (135)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998754
No 60
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.7e-15 Score=138.19 Aligned_cols=85 Identities=22% Similarity=0.412 Sum_probs=78.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||..+++++|+++|++||.|..|+|+. +..++.++|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPK---DRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCB---CSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34578999999999999999999999999999999984 667899999999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 89 v~~a~~~~ 96 (105)
T 1x5u_A 89 VNKASAHN 96 (105)
T ss_dssp EEETTTTS
T ss_pred EEECCCCC
Confidence 99998754
No 61
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.6e-15 Score=138.18 Aligned_cols=85 Identities=19% Similarity=0.377 Sum_probs=79.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhC------Ccee
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ------GVVV 134 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ln------G~~l 134 (852)
....++|||+|||+.+++++|+++|++||.|..|+|++ +..+|.++|||||+|.+.++|++|+..|| |..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVL---HPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCB---CSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 34578999999999999999999999999999999984 77788999999999999999999999999 9999
Q ss_pred cCeEEEEeeccCCC
Q 003053 135 YEYELKIGWGKSVA 148 (852)
Q Consensus 135 ~G~~l~V~~ak~~~ 148 (852)
+|+.|+|.|+++..
T Consensus 89 ~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 89 DGRQLKVDLAVTRD 102 (111)
T ss_dssp SSCEEEEECCCCCC
T ss_pred cCEEEEEEECCCCc
Confidence 99999999998754
No 62
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.61 E-value=1.6e-15 Score=138.55 Aligned_cols=86 Identities=17% Similarity=0.373 Sum_probs=79.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCcee---cC
Q 003053 60 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV---YE 136 (852)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l---~G 136 (852)
.+...++|||+|||..+++++|+++|++||.|..|+|+. +..+|+++|||||+|.+.++|++|+..|||..+ .|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLK---DRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCC---CSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 345678999999999999999999999999999999984 677899999999999999999999999999998 89
Q ss_pred eEEEEeeccCCC
Q 003053 137 YELKIGWGKSVA 148 (852)
Q Consensus 137 ~~l~V~~ak~~~ 148 (852)
+.|+|.|+++..
T Consensus 86 ~~l~v~~a~~~~ 97 (106)
T 2dgp_A 86 RPIQVKPADSES 97 (106)
T ss_dssp SCCEEEECCCCS
T ss_pred ceEEEEECCccc
Confidence 999999998754
No 63
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.61 E-value=2.3e-15 Score=137.28 Aligned_cols=84 Identities=25% Similarity=0.437 Sum_probs=77.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecC---e
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE---Y 137 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G---~ 137 (852)
.+..++|||+|||..+++++|+++|++||.|..|+|+. +. +|.++|||||+|.+.++|++|+..|||..+.| +
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLR---GP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEE---CS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 45678999999999999999999999999999999984 43 68899999999999999999999999999998 9
Q ss_pred EEEEeeccCCC
Q 003053 138 ELKIGWGKSVA 148 (852)
Q Consensus 138 ~l~V~~ak~~~ 148 (852)
.|+|.|+++..
T Consensus 88 ~l~V~~a~~~~ 98 (105)
T 2dnh_A 88 SLVVKFADTDK 98 (105)
T ss_dssp CCEEEESCSSC
T ss_pred cEEEEECccCc
Confidence 99999998754
No 64
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=138.48 Aligned_cols=84 Identities=24% Similarity=0.418 Sum_probs=77.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhcc-CCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCce-ecCeEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGR-FGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV-VYEYEL 139 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~-fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~-l~G~~l 139 (852)
...++|||+|||..+|+++|+++|++ ||.|..|+|+. +. +|.++|||||+|.+.++|++|+..|||.. |+|+.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVL---DQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEE---CT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEE---CC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 45689999999999999999999999 99999999994 55 88999999999999999999999999999 999999
Q ss_pred EEeeccCCCC
Q 003053 140 KIGWGKSVAL 149 (852)
Q Consensus 140 ~V~~ak~~~~ 149 (852)
+|.|+++...
T Consensus 83 ~v~~a~~~~~ 92 (104)
T 2dhg_A 83 RLSVAIPKAS 92 (104)
T ss_dssp CCCBCCCCCS
T ss_pred EEEEccCCCc
Confidence 9999976543
No 65
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=137.20 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=73.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCce--ecCeE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV--VYEYE 138 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~--l~G~~ 138 (852)
.+.+++|||+|||..+|+++|+++|++||.|.+|+++ +.+|||||+|.+.++|.+|++.|||.. |.|++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~---------~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM---------PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE---------cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 4467899999999999999999999999999999998 367999999999999999999999986 78999
Q ss_pred EEEeeccCCCC
Q 003053 139 LKIGWGKSVAL 149 (852)
Q Consensus 139 l~V~~ak~~~~ 149 (852)
|+|.|++++.+
T Consensus 89 i~V~~S~~k~l 99 (100)
T 3r27_A 89 AFVNYSTSQKI 99 (100)
T ss_dssp EEEEECSCSCC
T ss_pred EEEEecccccc
Confidence 99999988654
No 66
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.7e-15 Score=137.38 Aligned_cols=85 Identities=28% Similarity=0.468 Sum_probs=79.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||+.+++++|+++|++||.|..|+|+. +..++.++|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVK---DRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 85 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECC---CSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEe---CCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34678999999999999999999999999999999984 667889999999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 86 v~~a~~~~ 93 (102)
T 1x5s_A 86 VDQAGKSS 93 (102)
T ss_dssp EEEEECCC
T ss_pred EEECCCCC
Confidence 99998754
No 67
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.1e-15 Score=136.05 Aligned_cols=83 Identities=34% Similarity=0.518 Sum_probs=77.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||+.+|+++|+++|++||.|..|+|+. + +|.++|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMM---E--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEE---C--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc---C--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 44678999999999999999999999999999999984 3 788999999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 87 V~~a~~~~ 94 (103)
T 2d9p_A 87 VALAQRKE 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEEecccc
Confidence 99998754
No 68
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.61 E-value=3.4e-16 Score=142.23 Aligned_cols=81 Identities=15% Similarity=0.129 Sum_probs=76.7
Q ss_pred CcceEEEcCCCC------CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecC
Q 003053 63 QTTNLYVGNLSP------QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 136 (852)
Q Consensus 63 ~~~tLfVgnLp~------~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G 136 (852)
.+++|||+|||. .+++++|+++|++||.|.+|+|++ +..||+++|||||+|.+.++|++|+..|||..|.|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~---d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPI---DEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCE---ETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEE---cCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 468999999999 999999999999999999999984 77889999999999999999999999999999999
Q ss_pred -eEEEEeeccC
Q 003053 137 -YELKIGWGKS 146 (852)
Q Consensus 137 -~~l~V~~ak~ 146 (852)
+.|+|.|+++
T Consensus 82 ~r~l~V~~a~~ 92 (100)
T 3ns6_A 82 KHRLFLYTMKD 92 (100)
T ss_dssp SCBCEEEESHH
T ss_pred CeEEEEEECch
Confidence 9999999865
No 69
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.61 E-value=1.9e-15 Score=139.05 Aligned_cols=85 Identities=14% Similarity=0.325 Sum_probs=79.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
...+++|||+|||..+++++|+++|++||.|..|+|+. +..+|.++|||||+|.+.++|++|+..|||..|+|+.|+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNL---DRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCB---CTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34678999999999999999999999999999999984 667899999999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 100 V~~a~~~~ 107 (110)
T 1oo0_B 100 VDWCFVKG 107 (110)
T ss_dssp EEESEESS
T ss_pred EEEcccCC
Confidence 99998753
No 70
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=7.4e-15 Score=133.48 Aligned_cols=85 Identities=28% Similarity=0.517 Sum_probs=76.7
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 60 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
.....++|||+|||..+++++|+++|++||.|..|+|+. +. +.++|||||+|.+.++|++|+..|||..|+|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~---~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF---NE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEEC---CT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345678999999999999999999999999999999984 32 2378999999999999999999999999999999
Q ss_pred EEeeccCCCC
Q 003053 140 KIGWGKSVAL 149 (852)
Q Consensus 140 ~V~~ak~~~~ 149 (852)
+|.|+++...
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cq3_A 86 EVNNATARVM 95 (103)
T ss_dssp EEEECCSSCC
T ss_pred EEEEcccCCC
Confidence 9999987653
No 71
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.61 E-value=1.1e-14 Score=137.09 Aligned_cols=85 Identities=22% Similarity=0.250 Sum_probs=78.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
...+++|||+|||..+++++|+++|++||.|..|+|+. +. +|+++|||||+|.+.++|++|+..|||..|+|+.|+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~---~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 107 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDY---DR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 107 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEEC---CS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEE---CC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34678999999999999999999999999999999984 55 889999999999999999999999999999999999
Q ss_pred EeeccCCCC
Q 003053 141 IGWGKSVAL 149 (852)
Q Consensus 141 V~~ak~~~~ 149 (852)
|.||.+...
T Consensus 108 V~~a~~~~~ 116 (124)
T 2kt5_A 108 IQLVASQID 116 (124)
T ss_dssp EEEECCTTC
T ss_pred EEEeCCCCC
Confidence 999987543
No 72
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.61 E-value=1.5e-15 Score=149.55 Aligned_cols=117 Identities=23% Similarity=0.363 Sum_probs=95.9
Q ss_pred cceEehhh-------hHHhhhcceecc-CCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVS-NIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLS 73 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls-~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp 73 (852)
||||||.| .|+..|+|..+. +...++.+.++..... .....++|||+|||
T Consensus 47 ~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~l~v~nl~ 104 (175)
T 3nmr_A 47 KGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKN----------------------NAVEDRKLFIGMIS 104 (175)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCC----------------------SCGGGSEEEEESCC
T ss_pred ceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccccccc----------------------ccCCCCeEEEcCCC
Confidence 68999999 389999997654 3333666665443210 12246799999999
Q ss_pred CCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceec---CeEEEEeec
Q 003053 74 PQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY---EYELKIGWG 144 (852)
Q Consensus 74 ~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~---G~~l~V~~a 144 (852)
..+|+++|+++|++||.|.+|+++. + .+|.++|||||+|.+.++|.+|+..|||..+. |++|+|.||
T Consensus 105 ~~~t~~~l~~~F~~~G~i~~v~~~~---~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 105 KKCTENDIRVMFSSFGQIEECRILR---G-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEE---C-TTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred CcCCHHHHHHHHHhCCCEEEEEEEE---C-CCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 9999999999999999999999984 3 35889999999999999999999999998876 499999997
No 73
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.7e-15 Score=135.09 Aligned_cols=81 Identities=15% Similarity=0.208 Sum_probs=73.9
Q ss_pred CCcceEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCe
Q 003053 62 PQTTNLYVGNLSPQVDENFLL----RTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 137 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~----~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~ 137 (852)
...++|||+|||..+++++|+ ++|++||.|.+|+|+. +..+ +|||||+|.+.++|++|+..|||..|+|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~---~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSP---HTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECS---CCST---TCCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEe---CCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 356899999999999999999 9999999999999984 4433 78999999999999999999999999999
Q ss_pred EEEEeeccCCC
Q 003053 138 ELKIGWGKSVA 148 (852)
Q Consensus 138 ~l~V~~ak~~~ 148 (852)
.|+|.|+++..
T Consensus 81 ~l~V~~a~~~~ 91 (96)
T 2dgx_A 81 KILVSLATGAS 91 (96)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEEcCCCC
Confidence 99999998654
No 74
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.61 E-value=7.6e-15 Score=140.76 Aligned_cols=87 Identities=33% Similarity=0.485 Sum_probs=80.1
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeE
Q 003053 59 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 138 (852)
Q Consensus 59 ~~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~ 138 (852)
......++|||+|||..+++++|+++|+.||.|.+|+|+. +..+|+++|||||+|.+.++|++|+..|||..|.|+.
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 113 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVC---DRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKR 113 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEE---ETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---cCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 3445678999999999999999999999999999999984 6678899999999999999999999999999999999
Q ss_pred EEEeeccCCC
Q 003053 139 LKIGWGKSVA 148 (852)
Q Consensus 139 l~V~~ak~~~ 148 (852)
|+|.|+++..
T Consensus 114 l~v~~a~~~~ 123 (139)
T 1u6f_A 114 LKVALAASGH 123 (139)
T ss_dssp EEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 9999998754
No 75
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.1e-15 Score=138.38 Aligned_cols=85 Identities=19% Similarity=0.302 Sum_probs=78.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCee--------EEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCc
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIA--------SVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 132 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~--------~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~ 132 (852)
....++|||+|||..+++++|+++|++||.|. .|+|++ +..+|+++|||||+|.+.++|++|+..|||.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYL---DKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCB---CTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEE---eCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 45678999999999999999999999999999 688884 6678999999999999999999999999999
Q ss_pred eecCeEEEEeeccCCC
Q 003053 133 VVYEYELKIGWGKSVA 148 (852)
Q Consensus 133 ~l~G~~l~V~~ak~~~ 148 (852)
.|.|+.|+|.|+++..
T Consensus 89 ~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKP 104 (113)
T ss_dssp EETTEECEEECSSCCC
T ss_pred ccCCCEEEEEECCCCC
Confidence 9999999999998754
No 76
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=132.80 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=75.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCC-cccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRR-QRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~-~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
..++|||+|||.++++++|+++|++||.|..|.|+. +..++. ++|||||+|.+.++|++|+..|||..++|+.|+|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 79 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPV---ERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITA 79 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCE---ETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEe---CCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEE
Confidence 467999999999999999999999999999999984 544544 8999999999999999999999999999999999
Q ss_pred eeccCC
Q 003053 142 GWGKSV 147 (852)
Q Consensus 142 ~~ak~~ 147 (852)
.|+.+.
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 999754
No 77
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.60 E-value=1.9e-15 Score=161.83 Aligned_cols=121 Identities=9% Similarity=0.121 Sum_probs=104.6
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
+|||||.| .|+..|+|..+.++ +|.+.++..... .......++|||+|||.
T Consensus 137 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~--~i~v~~a~~~~~--------------------~~~~~~~~~l~v~nlp~ 194 (284)
T 3smz_A 137 KGYGFAEYMKKDSAARAKSDLLGKPLGPR--TLYVHWTDAGQL--------------------TPALLHSRCLCVDRLPP 194 (284)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEECCGGGC--------------------CTTTTSCSEEEEECCCT
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEeCCc--EEEEEECCCCCC--------------------CcccCCccEEEEecCCc
Confidence 68999999 49999999999998 899988765311 01123567999999999
Q ss_pred CC-CHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccCCC
Q 003053 75 QV-DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 148 (852)
Q Consensus 75 ~v-te~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~~ 148 (852)
.+ |+++|+++|+.||.|..|+|+. + .+|+++|||||+|.+.++|.+|+..|||..|+|+.|+|.|+++..
T Consensus 195 ~~~~~~~l~~~f~~~G~i~~v~i~~---~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 195 GFNDVDALCRALSAVHSPTFCQLAC---G-QDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp TCCCHHHHHHHTCSSSCCSEEEEEE---C-SSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred ccCCHHHHHHHhhCCCCeEEEEEEE---C-CCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 96 9999999999999999999984 3 378899999999999999999999999999999999999997654
No 78
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.3e-15 Score=138.81 Aligned_cols=84 Identities=29% Similarity=0.510 Sum_probs=76.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 60 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
.....++|||+|||..+++++|+++|++||.|..|+|+. + .+.++|||||+|.+.++|++|+..|||..|+|+.|
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~--~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF---N--ERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECC---B--TTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEE---C--CCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 355678999999999999999999999999999999984 3 23488999999999999999999999999999999
Q ss_pred EEeeccCCC
Q 003053 140 KIGWGKSVA 148 (852)
Q Consensus 140 ~V~~ak~~~ 148 (852)
+|.|+++..
T Consensus 100 ~V~~a~~~~ 108 (109)
T 2err_A 100 EVNNATARV 108 (109)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCc
Confidence 999998754
No 79
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.60 E-value=2.6e-15 Score=133.40 Aligned_cols=83 Identities=19% Similarity=0.315 Sum_probs=76.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
+..++|||+|||..+++++|+++|++||.|..|+|+. .+|.++|||||+|.+.++|++|+..|||..|.|+.|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~-----~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM-----ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE-----SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-----cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4578999999999999999999999999999999983 37889999999999999999999999999999999999
Q ss_pred eeccCCCC
Q 003053 142 GWGKSVAL 149 (852)
Q Consensus 142 ~~ak~~~~ 149 (852)
.|+++...
T Consensus 81 ~~a~~~~~ 88 (92)
T 2dgv_A 81 RIDRNASG 88 (92)
T ss_dssp EECSCCSS
T ss_pred EEcCCCCC
Confidence 99987643
No 80
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=5.6e-15 Score=134.43 Aligned_cols=83 Identities=17% Similarity=0.266 Sum_probs=76.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||..+++++|+++|++|| |..|+|+. +..+|+++|||||+|.+.++|++|+ .|||..|.|+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 86 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVR---DKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLR 86 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEE---CSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEee---cCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEE
Confidence 34578999999999999999999999997 99999994 6778999999999999999999999 8999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 87 V~~a~~~~ 94 (103)
T 2dng_A 87 VDIAEGRK 94 (103)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99998754
No 81
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.7e-15 Score=136.28 Aligned_cols=84 Identities=20% Similarity=0.205 Sum_probs=77.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
.+..++|||+|||..+++++|+++|++||.|..+.++. +..+|+++|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 88 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK---YNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEE---ECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEE---ECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 45678999999999999999999999999999888773 677889999999999999999999999999999999999
Q ss_pred EeeccCC
Q 003053 141 IGWGKSV 147 (852)
Q Consensus 141 V~~ak~~ 147 (852)
|.|++..
T Consensus 89 V~~a~~~ 95 (98)
T 2cqp_A 89 LVLGSGP 95 (98)
T ss_dssp EEESSCS
T ss_pred EEEcCCC
Confidence 9998753
No 82
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.60 E-value=2.5e-15 Score=143.22 Aligned_cols=85 Identities=12% Similarity=0.328 Sum_probs=78.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeE--EEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCc----e
Q 003053 60 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIAS--VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV----V 133 (852)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~--vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~----~ 133 (852)
.+..+++|||+|||+.+|+++|+++|++||.|.. |+|+ .|..+|+++|||||+|.+. +|.+|+..|||. .
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~---~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVI---KDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECC---BCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEE---EcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3456789999999999999999999999999977 9998 4778999999999999999 999999999999 9
Q ss_pred ecCeEEEEeeccCCC
Q 003053 134 VYEYELKIGWGKSVA 148 (852)
Q Consensus 134 l~G~~l~V~~ak~~~ 148 (852)
|+|+.|+|.|+++..
T Consensus 95 ~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 95 IDGKTINVEFAKGSK 109 (131)
T ss_dssp GGGCCCCCEECCCSC
T ss_pred CCCEEEEEEECCCCC
Confidence 999999999998653
No 83
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.59 E-value=3.5e-15 Score=131.68 Aligned_cols=75 Identities=16% Similarity=0.194 Sum_probs=70.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
..+.-||||||++.+||++|+++|.+||+|.+++++ .++|||||+|.+.++|++|+..|||..++|+.|+|
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~---------~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V 75 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY---------LNQGIALCKYTTREEANKAQMALNNCVLANTTIFA 75 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc---------CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 456789999999999999999999999999999998 37899999999999999999999999999999999
Q ss_pred eecc
Q 003053 142 GWGK 145 (852)
Q Consensus 142 ~~ak 145 (852)
.+|.
T Consensus 76 ~~A~ 79 (89)
T 2wbr_A 76 ESPS 79 (89)
T ss_dssp ECCC
T ss_pred EECC
Confidence 9984
No 84
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1e-14 Score=132.53 Aligned_cols=83 Identities=35% Similarity=0.576 Sum_probs=75.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||..+++++|+++|++||.|..|+|++ +. +.++|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMIT---EH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEEC---CC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEe---cC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 44678999999999999999999999999999999994 32 33689999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 87 V~~a~~~~ 94 (103)
T 2cqi_A 87 VNWATTPS 94 (103)
T ss_dssp EEECCCTT
T ss_pred EEECCCCc
Confidence 99998754
No 85
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.59 E-value=3.5e-15 Score=133.37 Aligned_cols=82 Identities=24% Similarity=0.442 Sum_probs=75.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
+...++|||+|||+.+++++|+++|++||.|..|+|+. +. +|.++|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICK---DR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEE---CT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEE---CC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 44678999999999999999999999999999999984 43 388999999999999999999999999999999999
Q ss_pred EeeccC
Q 003053 141 IGWGKS 146 (852)
Q Consensus 141 V~~ak~ 146 (852)
|.|++.
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999874
No 86
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.59 E-value=4.9e-15 Score=135.54 Aligned_cols=81 Identities=21% Similarity=0.271 Sum_probs=75.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||+.+++++|+++|++||.|..|+|+. +. +|.++|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY---DR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE---CT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34678999999999999999999999999999999984 44 889999999999999999999999999999999999
Q ss_pred Eeecc
Q 003053 141 IGWGK 145 (852)
Q Consensus 141 V~~ak 145 (852)
|.|+.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 87
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=4.2e-15 Score=137.50 Aligned_cols=87 Identities=24% Similarity=0.323 Sum_probs=75.7
Q ss_pred CCcceEEEcCCCCCCCHHHHH---HHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeE
Q 003053 62 PQTTNLYVGNLSPQVDENFLL---RTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 138 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~---~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~ 138 (852)
...++|||+|||+.+++++|. ++|++||.|..|+|+.......+++++|||||+|.+.++|++|+..|||..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 346799999999999999999 99999999999999852211223456799999999999999999999999999999
Q ss_pred EEEeeccCCC
Q 003053 139 LKIGWGKSVA 148 (852)
Q Consensus 139 l~V~~ak~~~ 148 (852)
|+|.||++..
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998764
No 88
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=6.2e-15 Score=135.26 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=72.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCc--eecCeE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV--VVYEYE 138 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~--~l~G~~ 138 (852)
.+.+++|||+|||..+++++|+++|++||.|..|.|+. .+|||||+|.+.++|++|+..|||. .|.|++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~ 82 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP---------FKRQALVEFENIDSAKECVTFAADVPVYIAGQQ 82 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC---------CCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 34578999999999999999999999999999999882 4799999999999999999998765 489999
Q ss_pred EEEeeccCCCC
Q 003053 139 LKIGWGKSVAL 149 (852)
Q Consensus 139 l~V~~ak~~~~ 149 (852)
|+|.|++...+
T Consensus 83 l~V~~a~~~~~ 93 (104)
T 1wex_A 83 AFFNYSTSKRI 93 (104)
T ss_dssp CEEEECSSSSC
T ss_pred EEEEEccCccc
Confidence 99999987654
No 89
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8.7e-16 Score=134.60 Aligned_cols=81 Identities=21% Similarity=0.323 Sum_probs=75.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
..+++|||+|||+.+++++|+++|++||.|..|+|+. +..+|.++|||||+|.+.++|++|+..|||..|.|+.|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 79 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAIL---DKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQ 79 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEEC---CSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEee
Confidence 4578999999999999999999999999999999994 6678999999999999999999999999999999999999
Q ss_pred eecc
Q 003053 142 GWGK 145 (852)
Q Consensus 142 ~~ak 145 (852)
.|++
T Consensus 80 ~~~~ 83 (85)
T 1x4e_A 80 SGPS 83 (85)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 8765
No 90
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.59 E-value=2.4e-15 Score=148.01 Aligned_cols=82 Identities=12% Similarity=0.189 Sum_probs=76.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFG--PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG--~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
..++|||||||+.+|+++|+++|++|| .|.+|+|+. |..+|+++|||||+|.+.++|++||..|||..|+|+.|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~---d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAE---NRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEE---CTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeE
Confidence 468999999999999999999999999 999999994 778999999999999999999999999999999999999
Q ss_pred EeeccCC
Q 003053 141 IGWGKSV 147 (852)
Q Consensus 141 V~~ak~~ 147 (852)
|.|+++.
T Consensus 131 V~~a~~~ 137 (156)
T 3n9u_C 131 VRPATRQ 137 (156)
T ss_dssp EEECCHH
T ss_pred EEEcCCC
Confidence 9998754
No 91
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.58 E-value=4.3e-15 Score=131.08 Aligned_cols=81 Identities=14% Similarity=0.271 Sum_probs=75.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
..++|||+|||..+++++|+++|++||.|..|+|+. +..+|+++|||||+|.+.++|++|+ .|||..+.|+.|+|.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~ 80 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILC---DKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVI 80 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEE---SCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEe---cCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEE
Confidence 457999999999999999999999999999999984 6678899999999999999999999 999999999999999
Q ss_pred eccCC
Q 003053 143 WGKSV 147 (852)
Q Consensus 143 ~ak~~ 147 (852)
|+++.
T Consensus 81 ~a~~~ 85 (89)
T 3ucg_A 81 PKRTN 85 (89)
T ss_dssp ETTTT
T ss_pred EccCC
Confidence 99763
No 92
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.58 E-value=5.1e-15 Score=158.46 Aligned_cols=112 Identities=19% Similarity=0.345 Sum_probs=101.5
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
+|||||.|. |+..|+|..+.++ ++.+.+.. ..++|||+|||+
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~~~~~~g~--~i~v~~~~-----------------------------~~~~l~v~nlp~ 105 (284)
T 3smz_A 57 KGTAFVTLLNGEQAEAAINAFHQSRLRER--ELSVQLQP-----------------------------TDALLCVANLPP 105 (284)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEECC-----------------------------CSCEEEEESCCT
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCeeCCe--EEEEEecC-----------------------------CCCEEEEcCCCC
Confidence 799999994 9999999999988 88877521 236999999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccCC
Q 003053 75 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSV 147 (852)
Q Consensus 75 ~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~ 147 (852)
.+|+++|+++|++||.|..|+|+. +..+|.++|||||+|.+.++|.+|+..|||..++|+.|.|.|+.+.
T Consensus 106 ~~t~~~l~~~f~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 106 SLTQQQFEELVRPFGSLERCFLVY---SERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred cCCHHHHHHHHHhcCCeeEEEEEe---eCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 999999999999999999999984 6678999999999999999999999999999999999999998764
No 93
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.58 E-value=3.3e-15 Score=140.92 Aligned_cols=85 Identities=14% Similarity=0.279 Sum_probs=79.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
...+++|||+|||..+|+++|+++|++||.|..|.|+. +..++.++|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNL---DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCB---CTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 34578999999999999999999999999999999984 667899999999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 96 v~~a~~~~ 103 (126)
T 3ex7_B 96 VDWCFVRG 103 (126)
T ss_dssp EEESEESS
T ss_pred EEEecCCC
Confidence 99998754
No 94
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.58 E-value=6.3e-15 Score=129.64 Aligned_cols=80 Identities=20% Similarity=0.305 Sum_probs=73.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
+...++|||+|||+.+++++|+++|++||.|..|+|+. +..+|+++|||||+|.+.++|++|+. ++|..|+|+.|+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 83 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM---DPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVID 83 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEE---CTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEee---cCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEE
Confidence 44678999999999999999999999999999999984 66789999999999999999999996 588999999999
Q ss_pred Eeec
Q 003053 141 IGWG 144 (852)
Q Consensus 141 V~~a 144 (852)
|.||
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9886
No 95
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=5.6e-15 Score=129.27 Aligned_cols=76 Identities=29% Similarity=0.626 Sum_probs=71.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHh-CCceecCeEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEM-QGVVVYEYEL 139 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~l-nG~~l~G~~l 139 (852)
++..++|||+|||..+++++|+++|++||.|..|+++. ++|||||+|.+.++|+.|+..| ||..+.|+.|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~---------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ---------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG---------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC---------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 45678999999999999999999999999999999983 5799999999999999999999 9999999999
Q ss_pred EEeecc
Q 003053 140 KIGWGK 145 (852)
Q Consensus 140 ~V~~ak 145 (852)
+|.||+
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999986
No 96
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-14 Score=133.49 Aligned_cols=82 Identities=24% Similarity=0.412 Sum_probs=75.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||..+|+++|+++|++||.|..|+|+. ++.++|||||+|.+.++|++|++.|||..|.|+.|+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN------RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC------SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE------CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 44678999999999999999999999999999999973 345789999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 93 V~~a~~~~ 100 (109)
T 1x4a_A 93 VEFPRSGR 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEEcccCC
Confidence 99998754
No 97
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=5.6e-15 Score=134.76 Aligned_cols=84 Identities=17% Similarity=0.228 Sum_probs=78.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
+...++|||+|||+.+++++|+++|++||.|..|+|+. +..++.++|||||+|.+.++|++|+.. ||..|.|+.|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMK---DKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEE---CSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee---CCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEE
Confidence 45678999999999999999999999999999999994 667889999999999999999999998 99999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 89 V~~a~~~~ 96 (105)
T 2dh8_A 89 PKPCTPRG 96 (105)
T ss_dssp CCCSCCSS
T ss_pred EEEccCCC
Confidence 99998654
No 98
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.58 E-value=3.6e-15 Score=142.00 Aligned_cols=84 Identities=29% Similarity=0.447 Sum_probs=78.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
.+..++|||+|||..+++++|+++|++||.|..|+|++ +..+|+++|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~---d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVY---DQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEEC---CSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44678999999999999999999999999999999994 777899999999999999999999999999999999999
Q ss_pred EeeccCC
Q 003053 141 IGWGKSV 147 (852)
Q Consensus 141 V~~ak~~ 147 (852)
|.|+++.
T Consensus 120 V~~a~~~ 126 (129)
T 2kxn_B 120 VDFSITK 126 (129)
T ss_dssp ESCCSSS
T ss_pred EEEecCC
Confidence 9999865
No 99
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=9.9e-15 Score=133.00 Aligned_cols=82 Identities=16% Similarity=0.269 Sum_probs=75.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCcccc-CCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEER-RRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~t-g~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
...++|||+|||..+++++|+++|++|| |..|.|+. +..+ |+++|||||+|.+.++|++|+ .|||..|.|+.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~---~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 87 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPR---EPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIR 87 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCB---CSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEec---CCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEE
Confidence 4568999999999999999999999999 99999984 6666 899999999999999999999 9999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 88 V~~a~~~~ 95 (104)
T 1wi8_A 88 VDVADQAQ 95 (104)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99998754
No 100
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.58 E-value=7.7e-16 Score=150.94 Aligned_cols=81 Identities=17% Similarity=0.361 Sum_probs=75.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
..++|||+|||..+++++|+++|++||.|..|+|+. +..+|.++|||||+|.+.++|.+|+. ++|..++|+.|+|.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~ 161 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLML---DKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIK 161 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCC---SSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEE---cCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEe
Confidence 356899999999999999999999999999999984 66789999999999999999999998 89999999999999
Q ss_pred eccCC
Q 003053 143 WGKSV 147 (852)
Q Consensus 143 ~ak~~ 147 (852)
||+++
T Consensus 162 ~a~pk 166 (167)
T 2cjk_A 162 RAEPR 166 (167)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99864
No 101
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.58 E-value=7.6e-15 Score=143.79 Aligned_cols=85 Identities=22% Similarity=0.389 Sum_probs=79.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||..+|+++|+++|++||.|..|+|+. +..++.++|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGL---DKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34678999999999999999999999999999999984 677889999999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 113 V~~a~~~~ 120 (156)
T 1h2v_Z 113 TDWDAGFK 120 (156)
T ss_dssp EEEESCCC
T ss_pred EEECCCCC
Confidence 99998754
No 102
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.7e-14 Score=131.05 Aligned_cols=84 Identities=19% Similarity=0.167 Sum_probs=76.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||..+++++|+++|++||.|..|+|+. +..+|.++|||||+|.+.++|++|+. ++..|+|+.|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKK---DLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEE---CSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEe---cCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 44678999999999999999999999999999999984 66789999999999999999999998 57899999999
Q ss_pred EeeccCCCC
Q 003053 141 IGWGKSVAL 149 (852)
Q Consensus 141 V~~ak~~~~ 149 (852)
|.|+++...
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 999987643
No 103
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.58 E-value=5.5e-15 Score=151.82 Aligned_cols=136 Identities=10% Similarity=0.082 Sum_probs=98.7
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCCCCCC--CCCCC------CCCCCC--CC----CCCCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPSSRFD--ELPDD------FDPSGK--LP----GSFDDG 60 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~--~~p~~------~~~~~~--~~----~~~~~~ 60 (852)
||||||.| .|+..|||..+.++ +|+|.++......... .++.. +..... .. ......
T Consensus 42 ~g~afV~f~~~~~A~~Ai~~lng~~~~g~--~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 119 (205)
T 3tyt_A 42 PGAAMVEMADGYAVDRAITHLNNNFMFGQ--KMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRI 119 (205)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCc--eEEEEEccCCccCCCcccccccCCccccccCCCccccccCccccccccc
Confidence 79999999 49999999999999 9999987643211000 00000 000000 00 000111
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCe--eEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCe-
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPI--ASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY- 137 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I--~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~- 137 (852)
.+.+++|||+|||+.+|+++|+++|++||.| .+|+++. +. +..+|||||+|.+.++|..|+..|||..|.|.
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~---~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~ 194 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS---GK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPN 194 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS---CC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSS
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc---CC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCC
Confidence 2456789999999999999999999999999 8999983 32 45569999999999999999999999999886
Q ss_pred ---EEEEeec
Q 003053 138 ---ELKIGWG 144 (852)
Q Consensus 138 ---~l~V~~a 144 (852)
++.|.|+
T Consensus 195 ~~~p~~vk~~ 204 (205)
T 3tyt_A 195 GPYPYTLKLC 204 (205)
T ss_dssp SSSCEECEEE
T ss_pred CCcceEEEec
Confidence 5666654
No 104
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-14 Score=132.84 Aligned_cols=80 Identities=13% Similarity=0.162 Sum_probs=72.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHh--CCceecCeE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEM--QGVVVYEYE 138 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~l--nG~~l~G~~ 138 (852)
.+.+++|||+|||+.+++++|+++|++||.|..|.|+. .+|||||+|.+.++|+.|+..| ++..|.|++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK---------GKNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC---------CCCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 34578999999999999999999999999999999882 3799999999999999999987 467899999
Q ss_pred EEEeeccCCCC
Q 003053 139 LKIGWGKSVAL 149 (852)
Q Consensus 139 l~V~~ak~~~~ 149 (852)
|+|.|+++..+
T Consensus 83 l~V~~a~~~~~ 93 (101)
T 2cq1_A 83 IYIQYSNHKEL 93 (101)
T ss_dssp CEEEECSCSSC
T ss_pred EEEEEcCcccC
Confidence 99999987665
No 105
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.5e-14 Score=128.74 Aligned_cols=77 Identities=22% Similarity=0.342 Sum_probs=71.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||..+++++|+++|++||.|..|+|+. +||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-----------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-----------SEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-----------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 45678999999999999999999999999999999873 4999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 76 V~~a~~~~ 83 (92)
T 2dgt_A 76 VQLSTSRL 83 (92)
T ss_dssp EEESSCCC
T ss_pred EEEccCCC
Confidence 99998754
No 106
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=4.5e-15 Score=135.69 Aligned_cols=77 Identities=18% Similarity=0.225 Sum_probs=70.4
Q ss_pred CcceEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCc--eecCeEE
Q 003053 63 QTTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV--VVYEYEL 139 (852)
Q Consensus 63 ~~~tLfVgnLp~-~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~--~l~G~~l 139 (852)
.+++|||+|||+ .+|+++|+++|++||.|.+|.|+. .+|||||+|.+.++|+.|+..|||. .|.|++|
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~---------~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN---------KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS---------SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc---------CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 578999999999 999999999999999999999983 4689999999999999999999865 5999999
Q ss_pred EEeeccCCC
Q 003053 140 KIGWGKSVA 148 (852)
Q Consensus 140 ~V~~ak~~~ 148 (852)
+|.||+...
T Consensus 85 ~V~~a~~~~ 93 (102)
T 1x4d_A 85 RVHLSQKYK 93 (102)
T ss_dssp EEEEECCCT
T ss_pred EEEECCCCC
Confidence 999998643
No 107
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.7e-15 Score=137.30 Aligned_cols=81 Identities=12% Similarity=0.177 Sum_probs=74.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
+...++|||||||+++|+++|+++|++||.|.+|.|+. +.. |.++|||||+|.+.++|++|+. +||..|+|+.|.
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~---d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~ 82 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRR---TLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLL 82 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEEC---CCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEE---CCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEE
Confidence 34568999999999999999999999999999999994 555 8999999999999999999999 999999999999
Q ss_pred EeeccC
Q 003053 141 IGWGKS 146 (852)
Q Consensus 141 V~~ak~ 146 (852)
|.|++.
T Consensus 83 V~~~~~ 88 (103)
T 1s79_A 83 ILFKDD 88 (103)
T ss_dssp EEEHHH
T ss_pred EEEchH
Confidence 999764
No 108
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.1e-15 Score=137.83 Aligned_cols=82 Identities=15% Similarity=0.260 Sum_probs=76.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
...++|||+|||..+++++|+++|++||.|..|+|+. +..+|.++|||||+|.+.++|++|+ .|||..|+|+.|+|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIIS---DRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIV 98 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECC---SCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEe---cCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEE
Confidence 3568999999999999999999999999999999984 7778999999999999999999999 99999999999999
Q ss_pred eeccCC
Q 003053 142 GWGKSV 147 (852)
Q Consensus 142 ~~ak~~ 147 (852)
.|+++.
T Consensus 99 ~~a~~~ 104 (114)
T 2cq4_A 99 QASQAE 104 (114)
T ss_dssp EEHHHH
T ss_pred EecCCC
Confidence 999764
No 109
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=4.4e-15 Score=141.19 Aligned_cols=82 Identities=16% Similarity=0.243 Sum_probs=73.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecC
Q 003053 61 DPQTTNLYVGNLSPQVDENFLL----RTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 136 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~----~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G 136 (852)
.+.+++|||+|||+.+++++|+ ++|++||.|.+|.+.. +++++|||||+|.+.++|+.|+..|||..|.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~------~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL------SDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC------CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc------CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 3457899999999999999865 7999999999998762 57889999999999999999999999999999
Q ss_pred eEEEEeeccCCC
Q 003053 137 YELKIGWGKSVA 148 (852)
Q Consensus 137 ~~l~V~~ak~~~ 148 (852)
+.|+|.||+...
T Consensus 100 r~l~V~~a~~~~ 111 (127)
T 2a3j_A 100 NPLVITFSETPQ 111 (127)
T ss_dssp SCCEEEECCCCC
T ss_pred CEEEEEEccCcc
Confidence 999999998653
No 110
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.57 E-value=7.3e-16 Score=136.58 Aligned_cols=81 Identities=20% Similarity=0.398 Sum_probs=72.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeec
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 144 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~a 144 (852)
++|||+|||..+++++|+++|++||.|..|+|++ +..+|.++|||||+|.+.+ |.+|+..|||..++|+.|+|.||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIY---DRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECC---CSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEE---cCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEc
Confidence 5899999999999999999999999999999984 6778999999999999999 99999999999999999999999
Q ss_pred cCCCC
Q 003053 145 KSVAL 149 (852)
Q Consensus 145 k~~~~ 149 (852)
.+...
T Consensus 78 ~~~~~ 82 (90)
T 2ki2_A 78 NPKKS 82 (90)
T ss_dssp -----
T ss_pred CCCCC
Confidence 87543
No 111
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.6e-15 Score=137.93 Aligned_cols=84 Identities=19% Similarity=0.417 Sum_probs=78.1
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
...++|||+|||..+++++|+++|++||.|..|+|++ +..+|.++|||||+|.+.++|++|+..|||..|.|+.|+|
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 82 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVY---DRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEE---ETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEe---CCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 3568999999999999999999999999999999984 6678899999999999999999999999999999999999
Q ss_pred eeccCCC
Q 003053 142 GWGKSVA 148 (852)
Q Consensus 142 ~~ak~~~ 148 (852)
.|+++..
T Consensus 83 ~~a~~~~ 89 (104)
T 1p1t_A 83 DNAASEK 89 (104)
T ss_dssp EETTCTT
T ss_pred EeCCCcc
Confidence 9998653
No 112
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.3e-15 Score=135.25 Aligned_cols=86 Identities=10% Similarity=0.330 Sum_probs=77.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhC--CceecCeE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGP-IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ--GVVVYEYE 138 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~-I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ln--G~~l~G~~ 138 (852)
...++|||+|||..+++++|+++|++||. |..|.|+. .+..+|.++|||||+|.+.++|+.|+..|| +..+.|+.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~--~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~ 83 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA--SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQ 83 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCS--SSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEc--cCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCe
Confidence 35789999999999999999999999998 99998872 366788999999999999999999999996 58999999
Q ss_pred EEEeeccCCCC
Q 003053 139 LKIGWGKSVAL 149 (852)
Q Consensus 139 l~V~~ak~~~~ 149 (852)
|+|.|+++...
T Consensus 84 l~V~~a~~~~~ 94 (109)
T 2dis_A 84 IAVDWAEPEID 94 (109)
T ss_dssp CEEEESCSSCS
T ss_pred EEEEEcCCCCC
Confidence 99999987654
No 113
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=129.34 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=75.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||..+++++|+++|++| .|..|+|++ + .+|+++|||||+|.+.++|++|+. |||..|+|+.|+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~---~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~ 80 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVR---N-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIE 80 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEE---C-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEE---C-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEE
Confidence 3457899999999999999999999999 999999984 4 688999999999999999999999 999999999999
Q ss_pred EeeccCC
Q 003053 141 IGWGKSV 147 (852)
Q Consensus 141 V~~ak~~ 147 (852)
|.|+++.
T Consensus 81 v~~a~~~ 87 (91)
T 2dgw_A 81 VFREKSG 87 (91)
T ss_dssp EEEESSC
T ss_pred EEECCcC
Confidence 9999875
No 114
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7.3e-15 Score=137.90 Aligned_cols=81 Identities=12% Similarity=0.167 Sum_probs=73.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCC--ceecCeE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG--VVVYEYE 138 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG--~~l~G~~ 138 (852)
.+.+++|||+|||+.+|+++|+++|++||.|.+|+|+. .+|||||+|.+.++|++|+..|++ ..|.|++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~---------~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK---------GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEG---------GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 44578999999999999999999999999999999983 379999999999999999999984 6899999
Q ss_pred EEEeeccCCCCC
Q 003053 139 LKIGWGKSVALP 150 (852)
Q Consensus 139 l~V~~ak~~~~p 150 (852)
|+|.|+++..+.
T Consensus 99 l~V~~a~~k~~~ 110 (119)
T 2ad9_A 99 IYIQFSNHKELK 110 (119)
T ss_dssp CEEEECSSSSCC
T ss_pred EEEEEccCCCCC
Confidence 999999887653
No 115
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=5e-15 Score=134.14 Aligned_cols=78 Identities=24% Similarity=0.485 Sum_probs=73.1
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 60 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
..+..++|||+|||..+++++|+.+|++||.|.+|+|+ +++|||||+|.+.++|++|+..|||..|+|+.|
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 93 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNL 93 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 34567899999999999999999999999999999998 468999999999999999999999999999999
Q ss_pred EEeeccC
Q 003053 140 KIGWGKS 146 (852)
Q Consensus 140 ~V~~ak~ 146 (852)
+|.|+++
T Consensus 94 ~V~~a~~ 100 (101)
T 2la4_A 94 RTGWGKE 100 (101)
T ss_dssp CCCBCCC
T ss_pred EEEeccC
Confidence 9999986
No 116
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.56 E-value=1.5e-14 Score=138.43 Aligned_cols=83 Identities=28% Similarity=0.472 Sum_probs=76.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeE
Q 003053 59 DGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 138 (852)
Q Consensus 59 ~~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~ 138 (852)
...+..++|||+|||..+++++|+++|++||.|..|+|+. +..+|+++|||||+|.+.++|++|+..|||..|.|+.
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 134 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPL---DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 134 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCC---CTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEee---cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3455678999999999999999999999999999999984 6678999999999999999999999999999999999
Q ss_pred EEEeec
Q 003053 139 LKIGWG 144 (852)
Q Consensus 139 l~V~~a 144 (852)
|+|.||
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999986
No 117
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.56 E-value=1e-14 Score=134.52 Aligned_cols=85 Identities=21% Similarity=0.301 Sum_probs=74.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 60 GDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 60 ~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
.....++|||+|||..+++++|+++|++||.|..|+|+. +..+|.++|||||+|.+.++|++|+..+ |..|+|+.|
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l 96 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMR---DPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTI 96 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECC---CTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEE---CCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEE
Confidence 345678999999999999999999999999999999984 7778999999999999999999999976 599999999
Q ss_pred EEeeccCCC
Q 003053 140 KIGWGKSVA 148 (852)
Q Consensus 140 ~V~~ak~~~ 148 (852)
+|.|+++..
T Consensus 97 ~V~~a~~~~ 105 (109)
T 2rs2_A 97 DPKVAFPRR 105 (109)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCCC
Confidence 999998654
No 118
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.2e-14 Score=133.72 Aligned_cols=79 Identities=22% Similarity=0.496 Sum_probs=73.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
.+..++|||+|||..+++++|+.+|++||.|..|+|+. .+|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~---------~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP---------EKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 92 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC---------CCCEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 45678999999999999999999999999999999984 379999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 93 v~~a~~~~ 100 (109)
T 1x4g_A 93 CYWGKESP 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99998764
No 119
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.56 E-value=3.3e-15 Score=133.56 Aligned_cols=83 Identities=20% Similarity=0.193 Sum_probs=74.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
.+..++|||+|||..+++++|+++|++||.|..+.++. +..+|+++|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~ 88 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLK---YNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEE---ECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEE---eCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 34568999999999999999999999999999888883 677889999999999999999999999999999999999
Q ss_pred EeeccC
Q 003053 141 IGWGKS 146 (852)
Q Consensus 141 V~~ak~ 146 (852)
|.++.+
T Consensus 89 v~~a~s 94 (95)
T 2ek1_A 89 LSGPSS 94 (95)
T ss_dssp EECCC-
T ss_pred EEeccC
Confidence 998764
No 120
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.56 E-value=3e-15 Score=135.81 Aligned_cols=82 Identities=16% Similarity=0.271 Sum_probs=73.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCcc-ccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEE-ERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~-~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
....++|||+|||.++++++|+++|++|| |.+|+|+. +. .+|+++|||||+|.+.++|++|+ .|||..|+|+.|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~---~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPR---EPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSC---CTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEe---cCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 34678999999999999999999999999 99999984 55 58899999999999999999999 899999999999
Q ss_pred EEeeccCC
Q 003053 140 KIGWGKSV 147 (852)
Q Consensus 140 ~V~~ak~~ 147 (852)
+|.|+++.
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 99999864
No 121
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=5.4e-15 Score=136.94 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=73.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
...++|||+|||..+++++|+++|++||.|..|.|+ .++|||||+|.+.++|+.|+..|||..|.|+.|+|
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~---------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 78 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP---------EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYL 78 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC---------SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe---------CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEE
Confidence 356899999999999999999999999999999887 36799999999999999999999999999999999
Q ss_pred eeccCCCC
Q 003053 142 GWGKSVAL 149 (852)
Q Consensus 142 ~~ak~~~~ 149 (852)
.|++....
T Consensus 79 ~~a~~~~~ 86 (111)
T 1whx_A 79 EWAPIGVF 86 (111)
T ss_dssp EEEETTTT
T ss_pred EECCCCcc
Confidence 99987544
No 122
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=6.2e-15 Score=136.92 Aligned_cols=79 Identities=16% Similarity=0.232 Sum_probs=71.6
Q ss_pred CCCcceEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCC--ceecCe
Q 003053 61 DPQTTNLYVGNLSPQ-VDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG--VVVYEY 137 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~-vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG--~~l~G~ 137 (852)
.+.+++|||+|||++ +++++|+++|++||.|.+|.|+ +++|||||+|.+.++|+.|++.||+ ..|.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~---------~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr 92 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM---------RMKSQAFIEMETREDAMAMVDHCLKKALWFQGR 92 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE---------TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe---------cCCCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 456789999999998 9999999999999999999998 3679999999999999999998864 569999
Q ss_pred EEEEeeccCCC
Q 003053 138 ELKIGWGKSVA 148 (852)
Q Consensus 138 ~l~V~~ak~~~ 148 (852)
.|+|.|++...
T Consensus 93 ~l~V~~a~~~~ 103 (112)
T 1x4f_A 93 CVKVDLSEKYK 103 (112)
T ss_dssp CCEEEEECSCS
T ss_pred EEEEEECcccc
Confidence 99999998654
No 123
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.55 E-value=9.4e-15 Score=133.76 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=74.2
Q ss_pred CCcceEEEcCCCCCC------CHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceec
Q 003053 62 PQTTNLYVGNLSPQV------DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY 135 (852)
Q Consensus 62 ~~~~tLfVgnLp~~v------te~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~ 135 (852)
...++|||+|||..+ ++++|+.+|++||.|..|.|+ ..+|+++|||||+|.+.++|++|+..|||..|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-----~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-----EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-----CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-----CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 346899999999999 789999999999999999887 257899999999999999999999999999999
Q ss_pred Ce-EEEEeeccCC
Q 003053 136 EY-ELKIGWGKSV 147 (852)
Q Consensus 136 G~-~l~V~~ak~~ 147 (852)
|+ .|+|.|+...
T Consensus 88 g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 88 KQHTFRVNLFTDF 100 (105)
T ss_dssp TTCEEEEECSCCC
T ss_pred CCceEEEEEcchH
Confidence 98 9999998753
No 124
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.8e-14 Score=129.62 Aligned_cols=78 Identities=28% Similarity=0.464 Sum_probs=72.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceec--CeE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY--EYE 138 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~--G~~ 138 (852)
.+..++|||+|||..+++++|+++|++||.|..|.++. .+|||||+|.+.++|++|+..|||..|. |+.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~---------~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK---------GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS---------SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC---------CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 34568999999999999999999999999999999982 3789999999999999999999999999 999
Q ss_pred EEEeeccCC
Q 003053 139 LKIGWGKSV 147 (852)
Q Consensus 139 l~V~~ak~~ 147 (852)
|+|.|+++.
T Consensus 85 l~V~~a~~~ 93 (97)
T 1why_A 85 LRVDFAKSG 93 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEECCCC
Confidence 999999875
No 125
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.3e-14 Score=129.75 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=73.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
+...++|||+|||..+++++|+++|++||.| +|+. + .+++++|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~---~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQ---N-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCB---C-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEE---C-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 4467899999999999999999999999977 4552 3 5788999999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 85 v~~a~~~~ 92 (101)
T 2fc9_A 85 LELQGPRG 92 (101)
T ss_dssp EEECSSCC
T ss_pred EEEcCCCC
Confidence 99998764
No 126
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.55 E-value=9.9e-15 Score=155.04 Aligned_cols=111 Identities=22% Similarity=0.363 Sum_probs=98.5
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
||||||.| .|+..|+|..+.++ ++++.++.+ +++|||+|||.
T Consensus 58 kg~afV~f~~~~~A~~A~~~l~g~~i~g~--~l~v~~a~~-----------------------------~~~l~v~nl~~ 106 (261)
T 3sde_A 58 RGFGFIRLESRTLAEIAKAELDGTILKSR--PLRIRFATH-----------------------------GAALTVKNLSP 106 (261)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTE--ECEEEECCC-----------------------------SSEEEEESCCT
T ss_pred CcEEEEEECCHHHHHHHHHHcCCcEECCc--eeEeeeccc-----------------------------CCcccccCCCC
Confidence 79999999 48999999999998 888887542 45899999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhC-Cceec---CeEEEEeeccCC
Q 003053 75 QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ-GVVVY---EYELKIGWGKSV 147 (852)
Q Consensus 75 ~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ln-G~~l~---G~~l~V~~ak~~ 147 (852)
.+|+++|+++|+.||.|..|.|+. + .+|+++|||||+|.+.++|.+|+..|| |..+. |++|.|.|+.+.
T Consensus 107 ~~t~~~l~~~F~~~G~i~~v~i~~---~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 107 VVSNELLEQAFSQFGPVEKAVVVV---D-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEE---E-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred CCCHHHHHHHHHhcCCeEEEEeee---C-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 999999999999999999999984 4 588999999999999999999999995 55554 999999998754
No 127
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.1e-14 Score=132.88 Aligned_cols=83 Identities=23% Similarity=0.370 Sum_probs=75.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCcee------
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV------ 134 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l------ 134 (852)
+...++|||+|||..+++++|+++|++||.|..|+|+. +. +|.++|||||+|.+.++|++|+..|||..|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~---~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILR---DS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEE---CS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEE---CC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 44678999999999999999999999999999999984 55 889999999999999999999999999999
Q ss_pred --cCeEEEEeeccCC
Q 003053 135 --YEYELKIGWGKSV 147 (852)
Q Consensus 135 --~G~~l~V~~ak~~ 147 (852)
.|++|.|.|+++.
T Consensus 98 ~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCSSCBEEEECCCS
T ss_pred cCCCCceeEEccCCC
Confidence 5788999998753
No 128
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.55 E-value=7e-15 Score=131.95 Aligned_cols=82 Identities=24% Similarity=0.455 Sum_probs=74.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecC
Q 003053 61 DPQTTNLYVGNLSPQVDENFLL----RTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 136 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~----~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G 136 (852)
.+.+++|||+|||..+++++|+ ++|++||.|..|.|+. +|.++|||||+|.+.++|+.|+..|||..++|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 78 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR------SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD 78 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH------HHHHTTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc------CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 3467899999999999999999 9999999999998872 56788999999999999999999999999999
Q ss_pred eEEEEeeccCCC
Q 003053 137 YELKIGWGKSVA 148 (852)
Q Consensus 137 ~~l~V~~ak~~~ 148 (852)
+.|+|.|+++..
T Consensus 79 ~~l~v~~a~~~~ 90 (97)
T 1nu4_A 79 KPMRIQYAKTDS 90 (97)
T ss_dssp EECEEEECSSCC
T ss_pred cEEEEEEccCCC
Confidence 999999998753
No 129
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.55 E-value=3.5e-15 Score=127.57 Aligned_cols=75 Identities=19% Similarity=0.327 Sum_probs=70.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeec
Q 003053 66 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 144 (852)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~a 144 (852)
+|||+|||+.+++++|+++|++||.|..|.|+. +..+|+++|||||+|.+.++|++|++ |||..|+|+.|+|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMF---DKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCB---CSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEe---cCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999884 66788999999999999999999998 9999999999999886
No 130
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.55 E-value=3.7e-14 Score=129.04 Aligned_cols=77 Identities=27% Similarity=0.460 Sum_probs=71.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
...++|||+|||..+|+++|+++|++||.|..|+|+ ++||||+|.+.++|++|+..|||..|.|+.|+|
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 456899999999999999999999999999999987 269999999999999999999999999999999
Q ss_pred eeccCCCC
Q 003053 142 GWGKSVAL 149 (852)
Q Consensus 142 ~~ak~~~~ 149 (852)
.|+++...
T Consensus 78 ~~a~~~~~ 85 (103)
T 2dgu_A 78 VFAKPPDQ 85 (103)
T ss_dssp EECCCCCC
T ss_pred EEcCCCcc
Confidence 99987643
No 131
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.6e-14 Score=134.21 Aligned_cols=83 Identities=22% Similarity=0.321 Sum_probs=77.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
...++|||+|||..+++++|+++|++||.|..|+|+. +..+|.++|||||+|.+.++|++|+.. ||..|+|+.|+|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V 100 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMR---DPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEP 100 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEEC---CTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEE---CCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEE
Confidence 3568999999999999999999999999999999994 677899999999999999999999998 999999999999
Q ss_pred eeccCCC
Q 003053 142 GWGKSVA 148 (852)
Q Consensus 142 ~~ak~~~ 148 (852)
.|+++..
T Consensus 101 ~~a~~~~ 107 (116)
T 1x4b_A 101 KRAVARE 107 (116)
T ss_dssp ECCSSCC
T ss_pred EECCCCc
Confidence 9998754
No 132
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.4e-14 Score=130.81 Aligned_cols=79 Identities=25% Similarity=0.463 Sum_probs=73.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
.+..++|||+|||..+++++|+++|++||.|..|+|+ +++|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---------~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 82 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH---------KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 82 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE---------TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe---------cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence 3456899999999999999999999999999999998 3579999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpj_A 83 VRFACHSA 90 (99)
T ss_dssp EEESSCCS
T ss_pred EEEcCCCC
Confidence 99998753
No 133
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.54 E-value=9.3e-15 Score=135.65 Aligned_cols=79 Identities=9% Similarity=-0.003 Sum_probs=72.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCC-CeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG-~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
.+..++|||+|||+++++++|+++|++|| .|..+.|+. +.++|||||+|.+.++|++|++.|||..|.|+.|
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-------~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i 97 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-------RDFDGTGALEFPSEEILVEALERLNNIEFRGSVI 97 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-------CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-------CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34568999999999999999999999999 899998862 2578999999999999999999999999999999
Q ss_pred EEeeccC
Q 003053 140 KIGWGKS 146 (852)
Q Consensus 140 ~V~~ak~ 146 (852)
+|.+++.
T Consensus 98 ~V~~a~~ 104 (111)
T 2jvr_A 98 TVERDDN 104 (111)
T ss_dssp EEEESCC
T ss_pred EEEECCC
Confidence 9999875
No 134
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.54 E-value=1.5e-14 Score=143.19 Aligned_cols=85 Identities=14% Similarity=0.325 Sum_probs=78.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
...+++|||+|||+.+++++|+.+|++||.|..|.|+. +..+|.++|||||+|.+.++|+.||..|||..|.|+.|.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNL---DRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEe---cCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34568999999999999999999999999999999984 667899999999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 146 V~~a~~~~ 153 (165)
T 1rk8_A 146 VDWCFVKG 153 (165)
T ss_dssp EEESEECC
T ss_pred EEEecCCC
Confidence 99998754
No 135
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=4.7e-15 Score=127.15 Aligned_cols=76 Identities=24% Similarity=0.388 Sum_probs=72.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeec
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 144 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~a 144 (852)
++|||+|||..+++++|+++|++||.|..|.|+. +..+|+++|||||+|.+.++|++|+..++ ..++|+.|+|.||
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMR---DPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEEC---CCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEec---CCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999999999999999984 66788999999999999999999999999 9999999999987
No 136
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=3.1e-14 Score=126.20 Aligned_cols=77 Identities=18% Similarity=0.387 Sum_probs=71.9
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||.++++++|+++|++||.|..|+|+ +|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 73 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNIN 73 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEE
Confidence 3467899999999999999999999999999999987 38999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 74 v~~a~~~~ 81 (90)
T 2dnq_A 74 VEASKNKS 81 (90)
T ss_dssp EECSSCCC
T ss_pred EEECCCCC
Confidence 99998754
No 137
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=130.26 Aligned_cols=79 Identities=22% Similarity=0.402 Sum_probs=72.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
.+..++|||+|||..+++++|+++|++||.|. +.++ +++++|||||+|.+.++|++|+..|||..|+|+.|+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~-------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLT-------WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLR 87 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEE-------EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEE-------cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34578999999999999999999999999997 6776 246889999999999999999999999999999999
Q ss_pred EeeccCC
Q 003053 141 IGWGKSV 147 (852)
Q Consensus 141 V~~ak~~ 147 (852)
|.|+++.
T Consensus 88 V~~a~~~ 94 (97)
T 2e5j_A 88 VALARQQ 94 (97)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999865
No 138
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.54 E-value=1.3e-14 Score=136.29 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=76.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
..++|||+|||..+|+++|+++|++||.|..|+|++ +..+|.++|||||+|.+.++|++|+ .|||..|+|+.|+|.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 110 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILC---DKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVL 110 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEE---ECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe---cCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 467999999999999999999999999999999984 6678999999999999999999999 899999999999999
Q ss_pred eccCC
Q 003053 143 WGKSV 147 (852)
Q Consensus 143 ~ak~~ 147 (852)
|+++.
T Consensus 111 ~a~~~ 115 (124)
T 2jwn_A 111 PKRTN 115 (124)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 99854
No 139
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.9e-14 Score=126.45 Aligned_cols=77 Identities=22% Similarity=0.320 Sum_probs=71.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||..+|+++|+.+|++||.|..|+|+. +||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-----------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 74 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-----------DYAFVHMEKEADAKAAIAQLNGKEVKGKRIN 74 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-----------SCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-----------CEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 44678999999999999999999999999999999983 4999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 75 v~~a~~~~ 82 (90)
T 2dnp_A 75 VELSTKGQ 82 (90)
T ss_dssp EEESCCCC
T ss_pred EEECCCCC
Confidence 99998753
No 140
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.53 E-value=2.4e-14 Score=132.02 Aligned_cols=80 Identities=30% Similarity=0.495 Sum_probs=72.4
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCe
Q 003053 58 DDGDPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 137 (852)
Q Consensus 58 ~~~~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~ 137 (852)
...+...++|||+|||.++++++|+++|++||.|..|+|+ +|||||+|.+.++|++|+..|||..|+|+
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----------NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----------TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----------CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3345678899999999999999999999999999999887 48999999999999999999999999999
Q ss_pred EEEEeeccCCC
Q 003053 138 ELKIGWGKSVA 148 (852)
Q Consensus 138 ~l~V~~ak~~~ 148 (852)
.|+|.|+++..
T Consensus 94 ~l~V~~a~~~~ 104 (108)
T 2jvo_A 94 PLEVVYSKLPA 104 (108)
T ss_dssp ECEEESCSCCC
T ss_pred EEEEEEecCCC
Confidence 99999998753
No 141
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=9.5e-14 Score=127.63 Aligned_cols=77 Identities=13% Similarity=0.175 Sum_probs=71.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecC-----
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE----- 136 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G----- 136 (852)
...++|||+|||+++++++|+++|++||.|..|+|+. + |||||+|.+.++|++||+.|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~---~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~ 82 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR---D-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 82 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET---T-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec---C-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcc
Confidence 3568999999999999999999999999999999983 2 899999999999999999999999999
Q ss_pred eEEEEeeccCCC
Q 003053 137 YELKIGWGKSVA 148 (852)
Q Consensus 137 ~~l~V~~ak~~~ 148 (852)
+.|+|.|+++..
T Consensus 83 ~~i~V~~a~~~~ 94 (108)
T 1x4c_A 83 AYIRVKVDGPRS 94 (108)
T ss_dssp EEEEEEESSCCS
T ss_pred eEEEEEeCCCCC
Confidence 999999998743
No 142
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.1e-14 Score=133.43 Aligned_cols=83 Identities=10% Similarity=0.053 Sum_probs=75.7
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCe-eEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPI-ASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I-~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
....++|||+|||+.+|+++|+++|+.||.| ..|+|++ +. +|+++|||||+|.+.++|++|+.. ||..|+|+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~---d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLV---DN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECC---CT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEE---CC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEE
Confidence 3456799999999999999999999999999 8999984 55 899999999999999999999987 9999999999
Q ss_pred EEeeccCCC
Q 003053 140 KIGWGKSVA 148 (852)
Q Consensus 140 ~V~~ak~~~ 148 (852)
+|.|+.+..
T Consensus 87 ~v~~a~~~~ 95 (114)
T 2cpy_A 87 FVHVVTLED 95 (114)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999997643
No 143
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.52 E-value=2.5e-14 Score=132.64 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=73.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
+.+++|||+|||..+++++|+.+|++||.|..|.|+. ++.++|||||+|.+.++|.+|+..|||..++|+.|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~------~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 79 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN------TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVV 79 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEC------STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee------CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3567999999999999999999999999999999984 3456899999999999999999999999999999999
Q ss_pred eeccCC
Q 003053 142 GWGKSV 147 (852)
Q Consensus 142 ~~ak~~ 147 (852)
.|+++.
T Consensus 80 ~~a~~~ 85 (115)
T 3lqv_A 80 LYYNAN 85 (115)
T ss_dssp EECCHH
T ss_pred EEecCC
Confidence 998753
No 144
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.52 E-value=8e-15 Score=127.53 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=67.5
Q ss_pred cceEEEcCCCCCC------CHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCe
Q 003053 64 TTNLYVGNLSPQV------DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 137 (852)
Q Consensus 64 ~~tLfVgnLp~~v------te~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~ 137 (852)
+++|||+|||..+ ++++|+++|++||.|.+|.|+ ..+|+++|||||+|.+.++|++|+..|||..|+|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-----EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-----CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-----CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 3689999999999 779999999999999999876 35788999999999999999999999999999999
Q ss_pred -EEEE
Q 003053 138 -ELKI 141 (852)
Q Consensus 138 -~l~V 141 (852)
.|+|
T Consensus 76 ~~l~V 80 (81)
T 2krb_A 76 HTFRV 80 (81)
T ss_dssp SCCCC
T ss_pred eeEEe
Confidence 8876
No 145
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.5e-14 Score=127.57 Aligned_cols=77 Identities=23% Similarity=0.372 Sum_probs=69.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCC-eeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCC-ceecCeEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGP-IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG-VVVYEYEL 139 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~-I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG-~~l~G~~l 139 (852)
...++|||+|||.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|+..||| ..|+|+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 75 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIM 75 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEE
Confidence 45689999999999999999999999999 6666554 579999999999999999999999 99999999
Q ss_pred EEeeccCCC
Q 003053 140 KIGWGKSVA 148 (852)
Q Consensus 140 ~V~~ak~~~ 148 (852)
+|.|+++..
T Consensus 76 ~v~~a~~~~ 84 (93)
T 2cqh_A 76 EVDYSVSKK 84 (93)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998753
No 146
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.52 E-value=5e-14 Score=127.15 Aligned_cols=77 Identities=25% Similarity=0.413 Sum_probs=71.2
Q ss_pred CCCCcceEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeE
Q 003053 60 GDPQTTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 138 (852)
Q Consensus 60 ~~~~~~tLfVgnLp~-~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~ 138 (852)
..+.+++|||+|||. .+++++|+++|++||.|..|+|. +|||||+|.+.++|++|+..|||..++|+.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 345688999999998 99999999999999999999884 589999999999999999999999999999
Q ss_pred EEEeeccCC
Q 003053 139 LKIGWGKSV 147 (852)
Q Consensus 139 l~V~~ak~~ 147 (852)
|+|.|+++.
T Consensus 87 l~V~~a~~~ 95 (97)
T 2xnq_A 87 LILEVSSSN 95 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999999764
No 147
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.3e-13 Score=124.05 Aligned_cols=76 Identities=25% Similarity=0.435 Sum_probs=70.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
...++|||+|| .+|+++|+++|++||.|..|.|. .++|||||+|.+.++|++|+..|||..|.|+.|+|
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 45789999996 99999999999999999999986 57899999999999999999999999999999999
Q ss_pred eeccCCC
Q 003053 142 GWGKSVA 148 (852)
Q Consensus 142 ~~ak~~~ 148 (852)
.|+++..
T Consensus 82 ~~a~~~~ 88 (97)
T 1x5p_A 82 NIARKQP 88 (97)
T ss_dssp ECCSSCC
T ss_pred EECCCCC
Confidence 9998754
No 148
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.6e-13 Score=123.75 Aligned_cols=77 Identities=29% Similarity=0.451 Sum_probs=71.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccC--CCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRF--GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 138 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~f--G~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~ 138 (852)
....++|||+|||..+++++|+++|++| |.|..|+++ +|||||+|.+.++|++|+..|||..|.|+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3457899999999999999999999999 999998875 379999999999999999999999999999
Q ss_pred EEEeeccCCC
Q 003053 139 LKIGWGKSVA 148 (852)
Q Consensus 139 l~V~~ak~~~ 148 (852)
|+|.|+++..
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpd_A 81 IEVTLAKPVD 90 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCC
Confidence 9999998754
No 149
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=8.1e-14 Score=126.26 Aligned_cols=82 Identities=24% Similarity=0.414 Sum_probs=73.5
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||..+++++|+++|+.|+ .|+++. +..++.++|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~---~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVT---DRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEE---CSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEe---cCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 44678999999999999999999999884 566763 567889999999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 86 V~~a~~~~ 93 (102)
T 2fc8_A 86 LDWAKPKG 93 (102)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99998754
No 150
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=3.6e-14 Score=128.49 Aligned_cols=76 Identities=25% Similarity=0.462 Sum_probs=71.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeec
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 144 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~a 144 (852)
|+|||+|||..+|+++|+++|++||.|..|.|+. + ++|||||+|.+.++|++|+..|||..+.|+.|+|.|+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIAR---N-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEES---S-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee---C-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 5899999999999999999999999999999984 2 6899999999999999999999999999999999999
Q ss_pred cCCC
Q 003053 145 KSVA 148 (852)
Q Consensus 145 k~~~ 148 (852)
++..
T Consensus 73 ~~~~ 76 (101)
T 2hvz_A 73 TGMP 76 (101)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 8764
No 151
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.9e-14 Score=131.21 Aligned_cols=85 Identities=29% Similarity=0.392 Sum_probs=73.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
.+.+++|||+|||..+|+++|+++|++||.|..|.+.. +..+|+++|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~---~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQF---RMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEE---EEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEE---EcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34578999999999999999999999999994432221 222788999999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 99 v~~a~~~~ 106 (115)
T 2cpx_A 99 IEFGKNKK 106 (115)
T ss_dssp EEECCCCS
T ss_pred EEEccCCC
Confidence 99998754
No 152
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=6.3e-15 Score=133.49 Aligned_cols=81 Identities=22% Similarity=0.330 Sum_probs=74.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
..++|||+|||..+|+++|+++|++||.|.. .++ .+..+|+++|||||+|.+.++|++|++ |||..|.|+.|+|.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~---~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAV---VDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCC---CEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEE---ecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 5689999999999999999999999999888 555 367789999999999999999999998 99999999999999
Q ss_pred eccCCC
Q 003053 143 WGKSVA 148 (852)
Q Consensus 143 ~ak~~~ 148 (852)
|+++..
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 998653
No 153
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=6.5e-14 Score=127.94 Aligned_cols=82 Identities=10% Similarity=0.086 Sum_probs=74.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeE-EEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIAS-VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~-vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
...++|||+|||+.+|+++|+++|++||.|.. |.|+. + .+|+++|||||+|.+.++|++|+.. ||..|+|+.|+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~---~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPV---D-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCB---C-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEE---C-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 45689999999999999999999999999987 77773 4 6899999999999999999999997 99999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.++....
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99987654
No 154
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.50 E-value=1.6e-14 Score=131.07 Aligned_cols=82 Identities=24% Similarity=0.404 Sum_probs=75.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||..+++++|+++|++||.|..|+|+. +. +|.++|||||+|.+.++|++|+. +|..|+|+.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~ 79 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIIT---DR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLK 79 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEE---CT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEE---CC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEE
Confidence 34568999999999999999999999999999999994 55 88999999999999999999998 99999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.++.+..
T Consensus 80 v~~a~~~~ 87 (102)
T 2xs2_A 80 LGPAIRKQ 87 (102)
T ss_dssp EEEEEECC
T ss_pred EEECCcCc
Confidence 99997654
No 155
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.50 E-value=3.9e-14 Score=152.18 Aligned_cols=110 Identities=11% Similarity=0.172 Sum_probs=93.7
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
||||||.|. |+ +|+|..+.++ ++.+.++ ..++|||+|||.
T Consensus 81 ~g~afV~f~~~~~A~~A~-~~~~~~~~g~--~i~v~~~------------------------------~~~~l~v~nlp~ 127 (292)
T 2ghp_A 81 FRFARIEFARYDGALAAI-TKTHKVVGQN--EIIVSHL------------------------------TECTLWMTNFPP 127 (292)
T ss_dssp SEEEEEEESSHHHHHHHH-TTTTCEETTE--ECEEEEC------------------------------CSCEEEEECCCT
T ss_pred cEEEEEEECCHHHHHHHH-HhCCcEeCCc--EEEEEEC------------------------------CCCEEEEECCCC
Confidence 699999994 88 5999999998 8887763 257999999999
Q ss_pred CCCHHHHHHHhccCC-CeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccCCC
Q 003053 75 QVDENFLLRTFGRFG-PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 148 (852)
Q Consensus 75 ~vte~~L~~~F~~fG-~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~~ 148 (852)
.+++++|.++|+.|| .|..|+|+. +. .|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.+..
T Consensus 128 ~~t~~~l~~~f~~~G~~i~~v~i~~---~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 128 SYTQRNIRDLLQDINVVALSIRLPS---LR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp TCCHHHHHHHHHHTTCCCCEEECC-----------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred CCCHHHHHHHHHHhCCCeEEEEEEe---CC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 999999999999999 999999984 33 37789999999999999999999999999999999999987543
No 156
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.49 E-value=1.8e-14 Score=150.51 Aligned_cols=82 Identities=15% Similarity=0.155 Sum_probs=76.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCC--CeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFG--PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG--~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
..++|||+||++.+|+++|+++|++|| .|.+|+|+. |..+|+++|||||+|.+.++|++||..|||..|.|+.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~---d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFE---NRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEE---CTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEe---cCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeE
Confidence 567999999999999999999999999 999999994 778999999999999999999999999999999999999
Q ss_pred EeeccCC
Q 003053 141 IGWGKSV 147 (852)
Q Consensus 141 V~~ak~~ 147 (852)
|.|+++.
T Consensus 144 V~~a~~~ 150 (229)
T 3q2s_C 144 VTPVNKQ 150 (229)
T ss_dssp EEECCHH
T ss_pred EEECCCC
Confidence 9998653
No 157
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.8e-14 Score=135.79 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=74.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
...++|||+|||+.+|+++|+++|+.||.|..+.++. +..+|+++|||||+|.+.++|++|+. |||..|+|+.|.|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~---~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIA---YGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEE---ECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEE---ECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 3568999999999999999999999999998855552 56789999999999999999999999 9999999999999
Q ss_pred eeccCC
Q 003053 142 GWGKSV 147 (852)
Q Consensus 142 ~~ak~~ 147 (852)
.|+...
T Consensus 99 ~~a~~~ 104 (124)
T 1wel_A 99 HPITKK 104 (124)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998754
No 158
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.6e-14 Score=132.04 Aligned_cols=78 Identities=21% Similarity=0.288 Sum_probs=70.7
Q ss_pred CCcceEEE--cCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCcee-----
Q 003053 62 PQTTNLYV--GNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV----- 134 (852)
Q Consensus 62 ~~~~tLfV--gnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l----- 134 (852)
..+++||| |||+..+++++|+++|++||.|..|.|+. .+|||||+|.+.++|++|++.|||..|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---------CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 34678999 78999999999999999999999998762 479999999999999999999999998
Q ss_pred cCeEEEEeeccCCC
Q 003053 135 YEYELKIGWGKSVA 148 (852)
Q Consensus 135 ~G~~l~V~~ak~~~ 148 (852)
.|++|.|.|++..+
T Consensus 94 ~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 94 QKITLYLNFVEKVQ 107 (114)
T ss_dssp CEEECEEEEESCCC
T ss_pred CCcEEEEEecccCc
Confidence 78999999998764
No 159
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=3.9e-14 Score=127.31 Aligned_cols=78 Identities=26% Similarity=0.388 Sum_probs=71.3
Q ss_pred CCCcceEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 61 DPQTTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 61 ~~~~~tLfVgnLp~-~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
.+..++|||+|||. .+++++|+++|++||.|..|.|. +|||||+|.+.++|+.|+..|||..+.|+.|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 75 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----------NAFGFIQFDNPQSVRDAIECESQEMNFGKKL 75 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTB
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 34678999999998 99999999999999999999885 4899999999999999999999999999999
Q ss_pred EEeeccCCCC
Q 003053 140 KIGWGKSVAL 149 (852)
Q Consensus 140 ~V~~ak~~~~ 149 (852)
+|.|+++...
T Consensus 76 ~V~~a~~~~~ 85 (96)
T 2kvi_A 76 ILEVSSSNAR 85 (96)
T ss_dssp CEEEEECCCC
T ss_pred EEEEcCcCCC
Confidence 9999987543
No 160
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.49 E-value=5.5e-14 Score=131.59 Aligned_cols=81 Identities=12% Similarity=0.057 Sum_probs=74.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGP---IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 138 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~---I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~ 138 (852)
...++|||+|||+++|+++|+++|+.||. |..|+|+. +.. |+++|||||+|.+.++|++|+. |||..|+|+.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~---~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIY---TRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEE---CSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEE---CCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 45689999999999999999999999999 89999984 444 8999999999999999999999 9999999999
Q ss_pred EEEeeccCC
Q 003053 139 LKIGWGKSV 147 (852)
Q Consensus 139 l~V~~ak~~ 147 (852)
|+|.++...
T Consensus 90 i~V~~a~~~ 98 (118)
T 2db1_A 90 IEVFKSHRT 98 (118)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999998654
No 161
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-13 Score=123.66 Aligned_cols=77 Identities=19% Similarity=0.265 Sum_probs=68.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
..++|||+|||..+++++|+.+|++||.|..| ++ +..+|+ ||||+|.+.++|++|+. |||..|+|+.|+|.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~----~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~ 77 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VM----DKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVR 77 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EE----CSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCB
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EE----cCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEE
Confidence 45799999999999999999999999999998 44 444554 99999999999999999 99999999999999
Q ss_pred eccCCC
Q 003053 143 WGKSVA 148 (852)
Q Consensus 143 ~ak~~~ 148 (852)
++.+..
T Consensus 78 ~a~~~~ 83 (94)
T 2e5g_A 78 PREQKE 83 (94)
T ss_dssp CSCCSC
T ss_pred ECCcCC
Confidence 887554
No 162
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.48 E-value=1.6e-13 Score=126.33 Aligned_cols=76 Identities=21% Similarity=0.377 Sum_probs=70.5
Q ss_pred CCCcceEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 61 DPQTTNLYVGNLSPQ-VDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~-vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
....++|||+|||+. +++++|+++|++||.|..|.|. +|||||+|.+.++|++|+..|||..|+|+.|
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 92 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH-----------KGYAFVQYSNERHARAAVLGENGRVLAGQTL 92 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE-----------TTEEEEECSSSHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe-----------CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 345689999999999 9999999999999999999883 5999999999999999999999999999999
Q ss_pred EEeeccCC
Q 003053 140 KIGWGKSV 147 (852)
Q Consensus 140 ~V~~ak~~ 147 (852)
+|.|++..
T Consensus 93 ~V~~a~~~ 100 (110)
T 1wf1_A 93 DINMAGEP 100 (110)
T ss_dssp CEEESCCC
T ss_pred EEEECCCC
Confidence 99999754
No 163
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.48 E-value=7.5e-14 Score=125.06 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=72.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||..+++++|+++|++||.|..+ . .++.++|||||+|.+.++|++|+..|||..|+|+.|+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--S------QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--E------ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--C------CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 4467899999999999999999999999988766 2 3678899999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 85 v~~a~~~~ 92 (96)
T 1fjc_A 85 LYYTGEKG 92 (96)
T ss_dssp EEECSSSC
T ss_pred EEEcCCCC
Confidence 99997653
No 164
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.4e-14 Score=127.41 Aligned_cols=81 Identities=16% Similarity=0.127 Sum_probs=72.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||+.+|+++|+++|++||. ..|+|++ +. +|+++|||||+|.+.++|++|+ .+|+..|+|+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~---d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~ 85 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEI---GP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVE 85 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEE---SS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEE---CC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEE
Confidence 345679999999999999999999999995 4999984 55 8999999999999999999999 5899999999999
Q ss_pred EeeccCC
Q 003053 141 IGWGKSV 147 (852)
Q Consensus 141 V~~ak~~ 147 (852)
|.++...
T Consensus 86 V~~~~~~ 92 (102)
T 1wez_A 86 LFLNSTA 92 (102)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9987653
No 165
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.48 E-value=1.3e-13 Score=121.77 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=70.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
..++|||+|||+.+++++|+++|++| .|..|+|. +++|||||+|.+.++|++|+..|||..++|+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 73 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQ 73 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 56799999999999999999999999 99999885 578999999999999999999999999999999999
Q ss_pred eccCCC
Q 003053 143 WGKSVA 148 (852)
Q Consensus 143 ~ak~~~ 148 (852)
|+....
T Consensus 74 ~a~~~~ 79 (88)
T 1wg1_A 74 LQPTDA 79 (88)
T ss_dssp ECCCCC
T ss_pred EcCCCc
Confidence 986644
No 166
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.47 E-value=6.7e-14 Score=135.04 Aligned_cols=87 Identities=24% Similarity=0.381 Sum_probs=73.6
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEE--EeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVK--IMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vk--i~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
..+++|||+|||+.+|+++|+.+|++||.|..|. ++.......+|+++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 3568999999999999999999999999988741 11100013578999999999999999999999999999999999
Q ss_pred EEeeccCCC
Q 003053 140 KIGWGKSVA 148 (852)
Q Consensus 140 ~V~~ak~~~ 148 (852)
+|.||++..
T Consensus 123 ~V~~a~~~~ 131 (143)
T 3egn_A 123 VVQFARSAR 131 (143)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCC
Confidence 999998653
No 167
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.21 E-value=3.6e-15 Score=138.81 Aligned_cols=85 Identities=18% Similarity=0.290 Sum_probs=78.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeE--------EEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCc
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIAS--------VKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 132 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~--------vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~ 132 (852)
....++|||+|||..+++++|+++|++||.|.. |+|+. +..+|+++|||||+|.+.++|++|+..|||.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYT---DRETGKLKGEATVSFDDPPSAKAAIDWFDGK 80 (116)
Confidence 345789999999999999999999999999998 88883 6678899999999999999999999999999
Q ss_pred eecCeEEEEeeccCCC
Q 003053 133 VVYEYELKIGWGKSVA 148 (852)
Q Consensus 133 ~l~G~~l~V~~ak~~~ 148 (852)
.|.|+.|+|.|+++..
T Consensus 81 ~~~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 81 EFSGNPIKVSFATRRA 96 (116)
Confidence 9999999999998653
No 168
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.47 E-value=2e-13 Score=134.64 Aligned_cols=80 Identities=21% Similarity=0.370 Sum_probs=72.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecC--eEEE
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE--YELK 140 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G--~~l~ 140 (852)
...+|||+||+..+|+++|+++|++||.|.+|.|.. ..++|||||+|.+.++|+.|+..|||..|.| +.|+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-------k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-------KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-------SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-------CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 356799999999999999999999999999999872 2357899999999999999999999999965 9999
Q ss_pred EeeccCCCC
Q 003053 141 IGWGKSVAL 149 (852)
Q Consensus 141 V~~ak~~~~ 149 (852)
|.|+++..+
T Consensus 118 V~~Ak~~~l 126 (164)
T 1sjr_A 118 IDFSKLTSL 126 (164)
T ss_dssp EEECSSSSC
T ss_pred EEEecCCcc
Confidence 999997643
No 169
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.47 E-value=1.9e-14 Score=122.85 Aligned_cols=75 Identities=21% Similarity=0.370 Sum_probs=70.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeec
Q 003053 66 NLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 144 (852)
Q Consensus 66 tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~a 144 (852)
+|||+|||..+++++|+++|++||.|..|.++. +..+|.++|||||+|.+.++|++|+. ++|..+.|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPM---DNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCC---SCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEe---cCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999883 67789999999999999999999998 4999999999999875
No 170
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.47 E-value=1.7e-13 Score=130.40 Aligned_cols=79 Identities=22% Similarity=0.391 Sum_probs=71.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccE-EEEEECCHHHHHHHHHHhCCceecC--eEE
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNC-GFVAFMNRADGQAAKDEMQGVVVYE--YEL 139 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~-gFV~F~~~~~A~~Ai~~lnG~~l~G--~~l 139 (852)
.-..|||+||+..+|+++|+++|++||.|.+|+|+. +.+|| |||+|.+.++|+.|++.|||..|.| +.|
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~--------~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT--------KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE--------ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc--------CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 345789999999999999999999999999998872 23577 9999999999999999999999998 999
Q ss_pred EEeeccCCCC
Q 003053 140 KIGWGKSVAL 149 (852)
Q Consensus 140 ~V~~ak~~~~ 149 (852)
+|.|+++..+
T Consensus 99 rI~~ak~~~l 108 (130)
T 3zzy_A 99 RIDFSKLTSL 108 (130)
T ss_dssp EEEECSCSSC
T ss_pred EEEecCCCce
Confidence 9999997654
No 171
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.47 E-value=5.8e-14 Score=134.97 Aligned_cols=81 Identities=12% Similarity=0.039 Sum_probs=74.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCe
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGP---IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 137 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~---I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~ 137 (852)
....++|||+|||+++|+++|+++|++||. |..|+|++ +.. |+++|||||+|.+.++|++|+. |||..|+|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~---d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr 115 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIY---TRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHR 115 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEE---CSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEE---CCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE
Confidence 345789999999999999999999999999 89999984 555 8999999999999999999999 999999999
Q ss_pred EEEEeeccC
Q 003053 138 ELKIGWGKS 146 (852)
Q Consensus 138 ~l~V~~ak~ 146 (852)
.|+|.++.+
T Consensus 116 ~i~V~~a~~ 124 (136)
T 2hgl_A 116 YIEVFKSHR 124 (136)
T ss_dssp EEEEEECCH
T ss_pred EEEEEECCh
Confidence 999999854
No 172
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.47 E-value=7e-14 Score=140.39 Aligned_cols=84 Identities=23% Similarity=0.269 Sum_probs=77.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
...+++|||+|||+.+++++|+++|++||.|..|.|+. +. +|.++|||||+|.+.++|++|+..|||..|.|+.|+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~---d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~ 160 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDY---DR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 160 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECC---CT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 34578999999999999999999999999999999984 55 889999999999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+....
T Consensus 161 V~~a~~~~ 168 (177)
T 2f3j_A 161 IQLVASQI 168 (177)
T ss_dssp EEEESSGG
T ss_pred EEEecCCC
Confidence 99997654
No 173
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.47 E-value=2.8e-14 Score=131.04 Aligned_cols=82 Identities=9% Similarity=0.030 Sum_probs=74.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCC---eeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCe
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGP---IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 137 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~---I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~ 137 (852)
....++|||+|||+++|+++|+++|+.||. |..|+|+. +.. |+++|||||+|.+.++|++|+. |||..|+|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~---~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLL---NRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQR 82 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCC---CTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEE---CCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCe
Confidence 345789999999999999999999999998 89999984 555 8999999999999999999999 999999999
Q ss_pred EEEEeeccCC
Q 003053 138 ELKIGWGKSV 147 (852)
Q Consensus 138 ~l~V~~ak~~ 147 (852)
.|+|.++.+.
T Consensus 83 ~i~V~~a~~~ 92 (107)
T 2lmi_A 83 YVEVYEINNE 92 (107)
T ss_dssp CCCCEECCHH
T ss_pred EEEEEECCHH
Confidence 9999998653
No 174
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.46 E-value=1.5e-13 Score=141.49 Aligned_cols=81 Identities=32% Similarity=0.542 Sum_probs=76.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
..++|||||||+++|+++|+++|++||.|.+|+|++ |..+|+++|||||+|.+.++|++|+..|||..+.|+.|+|.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~---d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCR---DMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEec---ccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 467999999999999999999999999999999994 77889999999999999999999999999999999999999
Q ss_pred eccC
Q 003053 143 WGKS 146 (852)
Q Consensus 143 ~ak~ 146 (852)
|+..
T Consensus 91 ~~~~ 94 (213)
T 4f02_A 91 WSQR 94 (213)
T ss_dssp ECCC
T ss_pred cccc
Confidence 8754
No 175
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.2e-13 Score=123.81 Aligned_cols=80 Identities=16% Similarity=0.311 Sum_probs=70.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEE-EeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVK-IMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vk-i~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
...++|||+|||+.+++++|+.+|++||.|..|+ |+. +..+ +.|||+|.+.++|+.|+..|||..|+|+.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~---~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 85 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNT---DSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLK 85 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECC---SSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeec---CCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 3468999999999999999999999999999995 663 3333 3399999999999999999999999999999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 86 V~~a~~~~ 93 (96)
T 2e44_A 86 VAYIPDEM 93 (96)
T ss_dssp EEECCCCC
T ss_pred EEEcCccc
Confidence 99998763
No 176
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.45 E-value=3.3e-13 Score=153.82 Aligned_cols=85 Identities=16% Similarity=0.352 Sum_probs=79.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
...++|||+|||+.||+++|..+|++||.|..|+|+. +..+|.++|||||+|.+.++|++||..|||..|+|+.|.|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~---d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V 176 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVY---SKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLV 176 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeec---cCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEE
Confidence 3467999999999999999999999999999999994 7778999999999999999999999999999999999999
Q ss_pred eeccCCCC
Q 003053 142 GWGKSVAL 149 (852)
Q Consensus 142 ~~ak~~~~ 149 (852)
.|+++...
T Consensus 177 ~~a~~~~~ 184 (437)
T 3pgw_S 177 DVERGRTV 184 (437)
T ss_pred EEeCCCCC
Confidence 99987543
No 177
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.45 E-value=2.2e-13 Score=121.10 Aligned_cols=75 Identities=19% Similarity=0.287 Sum_probs=63.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCcee--cCeE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVV--YEYE 138 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l--~G~~ 138 (852)
.+..++|||||||+++|+++|+++|++||.|.+|+|+. .++|||||+|.+.++|++ |+|..+ .|+.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~--------~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~ 75 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK--------PFRAFAFVTFADDKVAQS----LCGEDLIIKGIS 75 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS--------SCCSEEEEEESCHHHHHH----HTTCEEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee--------CCCCEEEEEECCHHHHHH----HcCCCcccCCEE
Confidence 45678999999999999999999999999999999984 378999999999999983 566664 5999
Q ss_pred EEEeeccCC
Q 003053 139 LKIGWGKSV 147 (852)
Q Consensus 139 l~V~~ak~~ 147 (852)
|.|.++++.
T Consensus 76 v~v~~a~~k 84 (89)
T 3d2w_A 76 VHISNAEPK 84 (89)
T ss_dssp EEEEECC--
T ss_pred EEEEEcCCC
Confidence 999998764
No 178
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2e-13 Score=126.21 Aligned_cols=78 Identities=14% Similarity=0.185 Sum_probs=71.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
..++|||+|||+++|+++|+++|+.| .|..|.|+. +.. |+++|||||+|.+.++|++|+ .|||..|+|+.|.|.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~---d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 88 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLK---DHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVS 88 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECC---CTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEE---CCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 45799999999999999999999999 899999984 544 899999999999999999999 699999999999998
Q ss_pred eccC
Q 003053 143 WGKS 146 (852)
Q Consensus 143 ~ak~ 146 (852)
.+..
T Consensus 89 ~a~~ 92 (109)
T 2dnn_A 89 PATE 92 (109)
T ss_dssp ECCH
T ss_pred ECCc
Confidence 7753
No 179
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.44 E-value=2.9e-13 Score=131.94 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=75.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEee
Q 003053 64 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGW 143 (852)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ 143 (852)
.++|||+|||+.+++++|+++|+.||.|.+|+++. +..+|.++|||||+|.+.++|++|+..|||..+.|+.|+|.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~---~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVR---DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEe---CCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEe
Confidence 57999999999999999999999999999999984 666889999999999999999999999999999999999999
Q ss_pred ccC
Q 003053 144 GKS 146 (852)
Q Consensus 144 ak~ 146 (852)
+.+
T Consensus 79 ~~~ 81 (167)
T 1fxl_A 79 ARP 81 (167)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 180
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=7.5e-13 Score=125.12 Aligned_cols=76 Identities=22% Similarity=0.312 Sum_probs=68.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccE-EEEEECCHHHHHHHHHHhCCceecC--eEEEE
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNC-GFVAFMNRADGQAAKDEMQGVVVYE--YELKI 141 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~-gFV~F~~~~~A~~Ai~~lnG~~l~G--~~l~V 141 (852)
..|||+||+..+|+++|+++|++||.|.+|+|+. + .|| |||+|.+.++|..|+..|||..|.| +.|+|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~--------~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK--------R-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE--------S-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe--------C-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 3578999999999999999999999999999972 1 276 9999999999999999999999987 69999
Q ss_pred eeccCCCC
Q 003053 142 GWGKSVAL 149 (852)
Q Consensus 142 ~~ak~~~~ 149 (852)
.||++..+
T Consensus 97 ~~Ak~~~l 104 (124)
T 2e5i_A 97 EYARPTRL 104 (124)
T ss_dssp ECCSCSCC
T ss_pred EEecCCcc
Confidence 99987654
No 181
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.43 E-value=3.1e-13 Score=138.76 Aligned_cols=80 Identities=15% Similarity=0.253 Sum_probs=73.4
Q ss_pred CCcceEEEcCCC-CCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 62 PQTTNLYVGNLS-PQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 62 ~~~~tLfVgnLp-~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
+.+++|||+||| ..+|+++|+++|++||.|.+|+|+. ..+|||||+|.+.++|+.|+..|||..|.|+.|+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~--------~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~ 73 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMK--------SKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMN 73 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECT--------TSTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEec--------CCCCEEEEEECCHHHHHHHHHHhCCCEECCceEE
Confidence 357899999999 7999999999999999999999983 2479999999999999999999999999999999
Q ss_pred EeeccCCCC
Q 003053 141 IGWGKSVAL 149 (852)
Q Consensus 141 V~~ak~~~~ 149 (852)
|.|++....
T Consensus 74 v~~s~~~~~ 82 (205)
T 3tyt_A 74 VCVSKQPAI 82 (205)
T ss_dssp EEECSCSCC
T ss_pred EEEccCCcc
Confidence 999986543
No 182
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.43 E-value=2.6e-13 Score=132.83 Aligned_cols=82 Identities=27% Similarity=0.428 Sum_probs=76.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
.+++|||+|||+++++++|+++|++||.|.+|+++. +..+|.++|||||+|.+.++|+.|+..|||..+.|+.|+|.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~---~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMR---DYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCE---ETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEE---eCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEE
Confidence 367999999999999999999999999999999984 66788999999999999999999999999999999999999
Q ss_pred eccCC
Q 003053 143 WGKSV 147 (852)
Q Consensus 143 ~ak~~ 147 (852)
|+++.
T Consensus 79 ~~~~~ 83 (168)
T 1b7f_A 79 YARPG 83 (168)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98753
No 183
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.42 E-value=3e-13 Score=127.35 Aligned_cols=76 Identities=25% Similarity=0.435 Sum_probs=70.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
..+++|||+|| ++|+++|+++|++||.|..|.|. .++|||||+|.+.++|++|+..|||..|.|+.|+|
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 45789999996 69999999999999999999987 57899999999999999999999999999999999
Q ss_pred eeccCCC
Q 003053 142 GWGKSVA 148 (852)
Q Consensus 142 ~~ak~~~ 148 (852)
.|+++..
T Consensus 106 ~~a~~~~ 112 (121)
T 2bz2_A 106 NIARKQP 112 (121)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 9998754
No 184
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=3.1e-13 Score=120.40 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=65.9
Q ss_pred CCcceEEEcCCCCCCCHHH----HHHHhccC-CCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecC
Q 003053 62 PQTTNLYVGNLSPQVDENF----LLRTFGRF-GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 136 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~----L~~~F~~f-G~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G 136 (852)
|..|.|||+|||..+++++ |+++|++| |.|.+| +| |+|||.|.+.++|.+|++.|||..+.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----------tg---G~AfV~F~~~esA~~A~~~l~G~~l~g 73 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----------TG---CSAILRFINQDSAERAQKRMENEDVFG 73 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----------CT---TCEEEEESSHHHHHHHHHHHTTCCSSS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----------ec---CEEEEEECCHHHHHHHHHHhcCCccCC
Confidence 3445599999999999987 66899999 599987 22 999999999999999999999999999
Q ss_pred eEEEEeeccCCC
Q 003053 137 YELKIGWGKSVA 148 (852)
Q Consensus 137 ~~l~V~~ak~~~ 148 (852)
++|+|.||+...
T Consensus 74 r~i~v~~A~~~s 85 (96)
T 2diu_A 74 NRIIVSFTPKNR 85 (96)
T ss_dssp SCCEEESSCCSC
T ss_pred ceEEEEecCCCc
Confidence 999999998754
No 185
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.41 E-value=2.4e-13 Score=127.82 Aligned_cols=79 Identities=11% Similarity=0.244 Sum_probs=71.1
Q ss_pred ceEEEcCC----CCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECC----HHH----HHHHHH--HhC
Q 003053 65 TNLYVGNL----SPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN----RAD----GQAAKD--EMQ 130 (852)
Q Consensus 65 ~tLfVgnL----p~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~----~~~----A~~Ai~--~ln 130 (852)
++|||||| |+.+++..|+.+|+.||.|.+|+++ +|+.||+++|||||+|.+ ..+ |.+|+. .||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li---~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAF---NDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEE---ECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEE---ecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence 68999999 9999999999999999999999999 599999999999999995 322 788988 789
Q ss_pred CceecCeEEEEeeccC
Q 003053 131 GVVVYEYELKIGWGKS 146 (852)
Q Consensus 131 G~~l~G~~l~V~~ak~ 146 (852)
|..|+|+.|+|.+-+.
T Consensus 80 g~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 80 GCFIMGFKFEVILNKH 95 (136)
T ss_dssp CEEETTEEEEEEECCT
T ss_pred CCeecCcEEEEEECcc
Confidence 9999999999987643
No 186
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.41 E-value=2.5e-13 Score=142.22 Aligned_cols=80 Identities=26% Similarity=0.493 Sum_probs=71.8
Q ss_pred CCCcceEEEcCCCCCC---------CHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCC
Q 003053 61 DPQTTNLYVGNLSPQV---------DENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 131 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~v---------te~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG 131 (852)
+..+++||||||+..+ ++++|+.+|++||.|.+|+|+ .++|||||+|.+.++|+.|+++|||
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~---------~~kG~AFV~F~~~~~Ae~A~~am~g 201 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV---------ESKNCGFVKFKYQANAEFAKEAMSN 201 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE---------GGGTEEEEEESSHHHHHHHHHHHTT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE---------CCCCEEEEEeCCHHHHHHHHHHhCC
Confidence 4568899999999998 799999999999999999998 3689999999999999999999999
Q ss_pred cee------------cCeEEEEeeccCCCC
Q 003053 132 VVV------------YEYELKIGWGKSVAL 149 (852)
Q Consensus 132 ~~l------------~G~~l~V~~ak~~~~ 149 (852)
..| .|+.|.|.||+..+.
T Consensus 202 ~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 202 QTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred CEEeccccccccccCCCCEEEEEEccCCCC
Confidence 999 899999999987643
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.40 E-value=3.9e-12 Score=135.82 Aligned_cols=82 Identities=23% Similarity=0.442 Sum_probs=75.3
Q ss_pred CCCcceEEEcCCCCCCCHHHHH----HHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecC
Q 003053 61 DPQTTNLYVGNLSPQVDENFLL----RTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 136 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~----~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G 136 (852)
...+++|||+|||..+|+++|+ ++|++||.|.+|+|+. +|+++|||||+|.+.++|++|+..|||..|.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR------SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD 79 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC------CCCcceEEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 3457899999999999999966 8999999999999883 67899999999999999999999999999999
Q ss_pred eEEEEeeccCCC
Q 003053 137 YELKIGWGKSVA 148 (852)
Q Consensus 137 ~~l~V~~ak~~~ 148 (852)
+.|+|.|++...
T Consensus 80 ~~l~v~~a~~~~ 91 (282)
T 3pgw_A 80 KPMRIQYAKTDS 91 (282)
T ss_pred cEEEEEEeccCc
Confidence 999999997654
No 188
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.39 E-value=7.9e-13 Score=132.81 Aligned_cols=83 Identities=22% Similarity=0.332 Sum_probs=76.0
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||+++|+++|+++|++||.|.+|+|+. +..+|.++|||||+|.+.++|++|+.. +|..+.|+.|.
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~ 85 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMR---DPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVE 85 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE---CTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEE---cCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEee
Confidence 34678999999999999999999999999999999994 677889999999999999999999986 99999999999
Q ss_pred EeeccCC
Q 003053 141 IGWGKSV 147 (852)
Q Consensus 141 V~~ak~~ 147 (852)
|.|+.+.
T Consensus 86 v~~~~~~ 92 (196)
T 1l3k_A 86 PKRAVSR 92 (196)
T ss_dssp EEECCC-
T ss_pred eecccCc
Confidence 9998754
No 189
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.39 E-value=7.1e-13 Score=116.20 Aligned_cols=72 Identities=26% Similarity=0.480 Sum_probs=66.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccC----C-------CeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhC
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRF----G-------PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ 130 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~f----G-------~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ln 130 (852)
...++|||+|||.++++++|+++|++| | .|.+++++ +.+|||||+|.+.++|++|+ .||
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~---------~~kg~afV~f~~~~~a~~A~-~l~ 73 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---------QDKNFAFLEFRSVDETTQAM-AFD 73 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC---------SSSSEEEEEESSHHHHHHHG-GGT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec---------CCCcEEEEEcCCHHHHHHHH-hcC
Confidence 357899999999999999999999999 8 89999988 34799999999999999999 999
Q ss_pred CceecCeEEEEee
Q 003053 131 GVVVYEYELKIGW 143 (852)
Q Consensus 131 G~~l~G~~l~V~~ 143 (852)
|..|.|+.|+|..
T Consensus 74 g~~~~g~~l~V~r 86 (87)
T 2hzc_A 74 GIIFQGQSLKIRR 86 (87)
T ss_dssp TCEETTEECEEEC
T ss_pred CCEECCeEEEEeC
Confidence 9999999999963
No 190
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.38 E-value=7.5e-13 Score=123.21 Aligned_cols=74 Identities=15% Similarity=0.219 Sum_probs=65.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeE----
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE---- 138 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~---- 138 (852)
..++|||+|||.++++++|+++|++||.|..|.|+. + |||||+|.+.++|++||+.|||..|+|+.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~ 84 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR---D-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 84 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECT---T-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEec---C-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeE
Confidence 467999999999999999999999999999999983 2 99999999999999999999999999998
Q ss_pred -EEEeeccC
Q 003053 139 -LKIGWGKS 146 (852)
Q Consensus 139 -l~V~~ak~ 146 (852)
|+|..+.+
T Consensus 85 ~i~v~~~~~ 93 (115)
T 3beg_B 85 YIRVKVDGP 93 (115)
T ss_dssp BCEEEECC-
T ss_pred EEEeccCCC
Confidence 66666554
No 191
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.38 E-value=1.7e-13 Score=132.12 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=72.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
...++|||+|||+++|+++|+++|++|| |..|+|++ +.. |+++|||||+|.+.++|++|| .+|+..|+|+.|+|
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~---d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEI---GPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCC---SSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEE---CCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 4567899999999999999999999999 67999984 544 899999999999999999999 79999999999999
Q ss_pred eeccCCC
Q 003053 142 GWGKSVA 148 (852)
Q Consensus 142 ~~ak~~~ 148 (852)
.++.+..
T Consensus 118 ~~a~~~~ 124 (139)
T 2hgn_A 118 FLNSTTG 124 (139)
T ss_dssp EECCCSC
T ss_pred EECCCCC
Confidence 8886543
No 192
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=9.5e-13 Score=122.16 Aligned_cols=77 Identities=23% Similarity=0.328 Sum_probs=67.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCcccc---CCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEER---RRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~t---g~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
..++|||+|||+.+++++|+++|++||.|. +.++. +..+ |+++|||||+|.+.++|++|+..|+ .++|+.|
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~---~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPH---KAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLY 80 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTT---SSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEee---cCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEE
Confidence 468999999999999999999999999999 77774 4444 7999999999999999999999995 4888888
Q ss_pred EEeecc
Q 003053 140 KIGWGK 145 (852)
Q Consensus 140 ~V~~ak 145 (852)
.+..+.
T Consensus 81 ~~~~~~ 86 (114)
T 2dnl_A 81 LCVSSP 86 (114)
T ss_dssp EEECCS
T ss_pred EeccCC
Confidence 887543
No 193
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.36 E-value=6.9e-13 Score=125.77 Aligned_cols=79 Identities=10% Similarity=0.097 Sum_probs=70.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCee--EEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIA--SVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~--~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
...++|||+|||+++|+++|+++|++| .|. .|+|++ |.. |+++|||||+|.+.++|++|+. +++..|+|+.|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~---d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I 113 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPV---DPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYI 113 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCC---CSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEE---CCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEE
Confidence 356789999999999999999999999 566 898884 555 8999999999999999999998 57899999999
Q ss_pred EEeeccC
Q 003053 140 KIGWGKS 146 (852)
Q Consensus 140 ~V~~ak~ 146 (852)
+|.++..
T Consensus 114 ~V~~a~~ 120 (126)
T 2hgm_A 114 EVFKSSQ 120 (126)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9988754
No 194
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=8.3e-13 Score=116.46 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=64.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCc--eecCeEEE
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV--VVYEYELK 140 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~--~l~G~~l~ 140 (852)
.+++|||+|||.++++++|+++|++||.|..|+|+. .++|||||+|.+.++|++| ++. .+.|+.|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--------~~~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~ 71 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPK--------PFRAFAFVTFADDQIAQSL----CGEDLIIKGISVH 71 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCS--------SCCSCCEEECSCHHHHHHT----TTCEEEETTEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEec--------CCCCEEEEEECCHHHHHHH----hcCCceeCCEEEE
Confidence 468999999999999999999999999999999983 2789999999999999754 444 45899999
Q ss_pred EeeccCCC
Q 003053 141 IGWGKSVA 148 (852)
Q Consensus 141 V~~ak~~~ 148 (852)
|.|+++..
T Consensus 72 v~~a~~~~ 79 (88)
T 1wf0_A 72 ISNAEPKH 79 (88)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99998654
No 195
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=4.8e-13 Score=126.35 Aligned_cols=80 Identities=14% Similarity=0.127 Sum_probs=71.9
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCe----eEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCe
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPI----ASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 137 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I----~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~ 137 (852)
...++|||+|||+++|+++|+++|++||.| ..|.|+. + .+|+++|||||+|.+.++|++|+.. ||..|+|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~---d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVT---Y-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEE---C-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEE---C-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe
Confidence 356799999999999999999999999986 6899884 4 4899999999999999999999985 99999999
Q ss_pred EEEEeeccC
Q 003053 138 ELKIGWGKS 146 (852)
Q Consensus 138 ~l~V~~ak~ 146 (852)
.|.|..+.+
T Consensus 96 ~i~V~~a~~ 104 (123)
T 2dha_A 96 YIELFRSTA 104 (123)
T ss_dssp EECCEEECH
T ss_pred EEEEEECCH
Confidence 999988754
No 196
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.35 E-value=2.1e-12 Score=125.62 Aligned_cols=79 Identities=32% Similarity=0.529 Sum_probs=72.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeec
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWG 144 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~a 144 (852)
.+|||+|||.++|+++|+++|++||.|.+|+|+. +. +++++|||||+|.+.++|..|+..|||..+.|+.|+|.|+
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~---~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMI---DK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEEC---CC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEE---CC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEc
Confidence 4899999999999999999999999999999984 33 4678999999999999999999999999999999999998
Q ss_pred cCC
Q 003053 145 KSV 147 (852)
Q Consensus 145 k~~ 147 (852)
.+.
T Consensus 77 ~~~ 79 (166)
T 3md3_A 77 FQS 79 (166)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 197
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.34 E-value=1.7e-12 Score=132.35 Aligned_cols=81 Identities=23% Similarity=0.505 Sum_probs=73.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
..++|||+|||.++|+++|+++|++||.|.+|+|++ +..+|.++|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 103 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSW---DSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVG 103 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECC---C-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEE
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEee---cCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEe
Confidence 457999999999999999999999999999999984 66788999999999999999999999999999999999998
Q ss_pred eccC
Q 003053 143 WGKS 146 (852)
Q Consensus 143 ~ak~ 146 (852)
|+..
T Consensus 104 ~~~~ 107 (216)
T 2qfj_A 104 RPSN 107 (216)
T ss_dssp CCSC
T ss_pred cCCC
Confidence 8754
No 198
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.31 E-value=6.6e-12 Score=115.22 Aligned_cols=81 Identities=12% Similarity=0.038 Sum_probs=70.6
Q ss_pred CcceEEEcCCCC-----CCCHHHHHHHhccCCCeeEEEEeccCCccc-cCCcccEEEEEECCHHHHHHHHHHhCCceecC
Q 003053 63 QTTNLYVGNLSP-----QVDENFLLRTFGRFGPIASVKIMWPRTEEE-RRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 136 (852)
Q Consensus 63 ~~~tLfVgnLp~-----~vte~~L~~~F~~fG~I~~vki~~pr~d~~-tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G 136 (852)
.+++|+|.||.. +-++++|+++|++||.|.+|.|+. +.. +++++|||||+|.+.++|.+|+..|||..++|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~---~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFE---IPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEE---CSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEec---CCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567999999963 237899999999999999999984 333 36789999999999999999999999999999
Q ss_pred eEEEEeeccC
Q 003053 137 YELKIGWGKS 146 (852)
Q Consensus 137 ~~l~V~~ak~ 146 (852)
+.|.|.|+..
T Consensus 84 r~i~v~~a~~ 93 (105)
T 2pe8_A 84 RVVKACFYNL 93 (105)
T ss_dssp EECEEEECCH
T ss_pred cEEEEEEcCH
Confidence 9999999854
No 199
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.30 E-value=3.4e-12 Score=124.80 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=72.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
.+++|||+|||+++|+++|+++|++||.|.+|+|++ +..+|.++|||||+|.+.++|+.|+.. +..++|+.|.|.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~---~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~ 76 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMK---DPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPK 76 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCC---CTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEE---CCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccc
Confidence 468999999999999999999999999999999984 677899999999999999999999984 678999999998
Q ss_pred eccC
Q 003053 143 WGKS 146 (852)
Q Consensus 143 ~ak~ 146 (852)
|+.+
T Consensus 77 ~~~~ 80 (167)
T 2cjk_A 77 RAIP 80 (167)
T ss_dssp ECCC
T ss_pred cccc
Confidence 8754
No 200
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.30 E-value=4.3e-12 Score=124.73 Aligned_cols=82 Identities=17% Similarity=0.421 Sum_probs=72.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccC--CcccEEEEEECCHHHHHHHHHHhCCceec---Ce
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERR--RQRNCGFVAFMNRADGQAAKDEMQGVVVY---EY 137 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg--~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~---G~ 137 (852)
..++|||+|||+.+|+++|+++|++||.|.+|+|+. +..++ +++|||||+|.+.++|++|+..|||..+. ++
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 78 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLR---DRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHH 78 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEE---ECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEe---cCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCcc
Confidence 468999999999999999999999999999999984 55565 78999999999999999999999998876 67
Q ss_pred EEEEeeccCC
Q 003053 138 ELKIGWGKSV 147 (852)
Q Consensus 138 ~l~V~~ak~~ 147 (852)
.+.+.++.+.
T Consensus 79 ~~~~~~~~~~ 88 (175)
T 3nmr_A 79 PIQMKPADSE 88 (175)
T ss_dssp CCEEEECGGG
T ss_pred ceEEcccccc
Confidence 7888776543
No 201
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.28 E-value=7.5e-12 Score=127.27 Aligned_cols=80 Identities=11% Similarity=0.156 Sum_probs=71.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
..++|||+|||+.+|+++|+++|++||.|..|+|++ + .+|.++|||||+|.+.++|++|+..+ |..++|+.|.|.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~---~-~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~ 182 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRR---T-LHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLIL 182 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEE---C-TTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEE---C-CCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEE
Confidence 457999999999999999999999999999999985 2 24789999999999999999999866 459999999999
Q ss_pred eccCC
Q 003053 143 WGKSV 147 (852)
Q Consensus 143 ~ak~~ 147 (852)
|++..
T Consensus 183 ~~~~y 187 (193)
T 2voo_A 183 FKDDY 187 (193)
T ss_dssp ETTTC
T ss_pred EhHHH
Confidence 98753
No 202
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.25 E-value=3.5e-11 Score=121.51 Aligned_cols=77 Identities=25% Similarity=0.431 Sum_probs=71.5
Q ss_pred cceEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEe
Q 003053 64 TTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIG 142 (852)
Q Consensus 64 ~~tLfVgnLp~-~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~ 142 (852)
+++|||+|||+ .+++++|+++|++||.|.+|+|+. + .+|||||+|.+.++|+.|+..|||..+.|+.|+|.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~---~-----~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 74 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILF---N-----KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 74 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECST---T-----CSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEe---C-----CCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEE
Confidence 57999999999 999999999999999999999984 2 27899999999999999999999999999999999
Q ss_pred eccCCC
Q 003053 143 WGKSVA 148 (852)
Q Consensus 143 ~ak~~~ 148 (852)
|++...
T Consensus 75 ~a~~~~ 80 (198)
T 1qm9_A 75 LSKHQN 80 (198)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998654
No 203
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.24 E-value=1e-11 Score=129.11 Aligned_cols=80 Identities=24% Similarity=0.412 Sum_probs=73.4
Q ss_pred CCCcceEEEcCCCC-CCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 61 DPQTTNLYVGNLSP-QVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 61 ~~~~~tLfVgnLp~-~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
.+.+++|||+|||+ .+++++|+++|++||.|.+|+|+. + .+|||||+|.+.++|++|++.|||..|.|+.|
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~---~-----~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 102 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILF---N-----KKENALVQMADGNQAQLAMSHLNGHKLHGKPI 102 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECC---T-----TSCCEEEEESCHHHHHHHHHHHTTCBCSSSBC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEE---C-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 34678999999999 999999999999999999999984 2 27899999999999999999999999999999
Q ss_pred EEeeccCCC
Q 003053 140 KIGWGKSVA 148 (852)
Q Consensus 140 ~V~~ak~~~ 148 (852)
+|.|+++..
T Consensus 103 ~v~~a~~~~ 111 (229)
T 2adc_A 103 RITLSKHQN 111 (229)
T ss_dssp EEECCSCCC
T ss_pred EEEEecCcc
Confidence 999998654
No 204
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.23 E-value=2.1e-11 Score=129.31 Aligned_cols=76 Identities=32% Similarity=0.540 Sum_probs=71.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEE
Q 003053 62 PQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKI 141 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V 141 (852)
...++|||+|||+.+|+++|+.+|++||.|..|+|. +++|||||.|.+.++|..|+..|||..|.|+.|+|
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~---------~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN---------RDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE---------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe---------CCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 456899999999999999999999999999999997 45799999999999999999999999999999999
Q ss_pred eeccC
Q 003053 142 GWGKS 146 (852)
Q Consensus 142 ~~ak~ 146 (852)
.|+.+
T Consensus 91 ~~a~~ 95 (261)
T 3sde_A 91 RFATH 95 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99864
No 205
>2dt7_B Splicing factor 3 subunit 1; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=99.23 E-value=1.7e-12 Score=113.59 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=49.9
Q ss_pred hhhHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccccccCCCCCccceeeeeeecc
Q 003053 211 LRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFA 265 (852)
Q Consensus 211 ~~~~Id~~a~~V~~~G~~FE~~~~~~~~~np~f~FL~d~~~~~h~YYrwkl~~~~ 265 (852)
...||++||.||+++|..||.+||+++.+||+|+||. +.+++|.||+|+|.++.
T Consensus 31 dl~iIk~TA~FVArnG~~Fe~~l~~re~~NpqF~FL~-p~h~~~~yy~~~v~~Y~ 84 (85)
T 2dt7_B 31 DLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLR-PQHSLFNYFTKLVEQYT 84 (85)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHTTTCGGGGGGS-TTSTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhcCCCCceeeCC-CCCCchHHHHHHHHHHh
Confidence 4589999999999999999999999999999999997 68999999999987653
No 206
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.23 E-value=3.5e-12 Score=125.98 Aligned_cols=82 Identities=23% Similarity=0.364 Sum_probs=72.4
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEE
Q 003053 61 DPQTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELK 140 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~ 140 (852)
....++|||+|||..+|+++|+++|..||.|..+.+. +..+|.++|||||+|.+.++|++|+ .|||..+.|+.|+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~----~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 84 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVV----DVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIK 84 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCC----EEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEE----ECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEE
Confidence 3457899999999999999999999999988763332 5678899999999999999999999 5999999999999
Q ss_pred EeeccCC
Q 003053 141 IGWGKSV 147 (852)
Q Consensus 141 V~~ak~~ 147 (852)
|.|+++.
T Consensus 85 v~~~~~~ 91 (175)
T 1fje_B 85 LEKPKGR 91 (175)
T ss_dssp EECCCCS
T ss_pred EecCCCc
Confidence 9998754
No 207
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=4.2e-11 Score=110.74 Aligned_cols=79 Identities=11% Similarity=0.164 Sum_probs=68.4
Q ss_pred CCcceEEEcCCCCCCC-----------HHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhC
Q 003053 62 PQTTNLYVGNLSPQVD-----------ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ 130 (852)
Q Consensus 62 ~~~~tLfVgnLp~~vt-----------e~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ln 130 (852)
..+++|+|.||....+ +++|+++|++||.|..|.|. +. .++|||||+|.+.++|++|+..||
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~----~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF----DR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE----TT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe----cC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 4578999999954432 57999999999999999664 22 378999999999999999999999
Q ss_pred CceecCeEEEEeeccCC
Q 003053 131 GVVVYEYELKIGWGKSV 147 (852)
Q Consensus 131 G~~l~G~~l~V~~ak~~ 147 (852)
|..|+|+.|+|.|+.+.
T Consensus 86 g~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGT 102 (112)
T ss_dssp TCEETTEECEEEECCSC
T ss_pred CCEECCcEEEEEEeCCC
Confidence 99999999999998764
No 208
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.19 E-value=4.1e-11 Score=117.67 Aligned_cols=74 Identities=26% Similarity=0.472 Sum_probs=67.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccC----C-------CeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCC
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRF----G-------PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 131 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~f----G-------~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG 131 (852)
..++|||+|||+.+|+++|+++|++| | .|.++++. +++|||||+|.+.++|++|+ .|||
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---------~~~g~afV~f~~~~~A~~A~-~~~~ 72 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---------QDKNFAFLEFRSVDETTQAM-AFDG 72 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---------TTTTEEEEEESSHHHHHHHG-GGTT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---------CCCCEEEEEeCCHHHHHHHH-HhCC
Confidence 46899999999999999999999999 6 77777776 46899999999999999999 8999
Q ss_pred ceecCeEEEEeeccC
Q 003053 132 VVVYEYELKIGWGKS 146 (852)
Q Consensus 132 ~~l~G~~l~V~~ak~ 146 (852)
..+.|+.|+|.|++.
T Consensus 73 ~~~~g~~i~v~~~~~ 87 (172)
T 2g4b_A 73 IIFQGQSLKIRRPHD 87 (172)
T ss_dssp CEETTEECEEECCSS
T ss_pred cEecCceeeecCCcc
Confidence 999999999998654
No 209
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.18 E-value=8e-11 Score=118.27 Aligned_cols=76 Identities=25% Similarity=0.449 Sum_probs=67.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccC----C-------CeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCC
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRF----G-------PIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 131 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~f----G-------~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG 131 (852)
..++|||+|||+.+|+++|+++|++| | .|.++.+. +++|||||+|.+.++|++|+ .|||
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---------~~~g~afV~F~~~~~A~~Al-~l~g 72 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---------QDKNFAFLEFRSVDETTQAM-AFDG 72 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---------TTTTEEEEEESCSHHHHHHG-GGTT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---------CCCCEEEEEeCCHHHHHHHH-HhcC
Confidence 46899999999999999999999999 5 56666554 57899999999999999999 8999
Q ss_pred ceecCeEEEEeeccCCC
Q 003053 132 VVVYEYELKIGWGKSVA 148 (852)
Q Consensus 132 ~~l~G~~l~V~~ak~~~ 148 (852)
..|.|+.|+|.|++...
T Consensus 73 ~~~~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 73 IIFQGQSLKIRRPHDYQ 89 (198)
T ss_dssp EEETTEEEEEECCCCCC
T ss_pred CEEcCceEEEeCCCCCC
Confidence 99999999999987653
No 210
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.17 E-value=7.1e-11 Score=108.31 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=68.7
Q ss_pred CCcceEEEcCC--CCCCC--------HHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCC
Q 003053 62 PQTTNLYVGNL--SPQVD--------ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 131 (852)
Q Consensus 62 ~~~~tLfVgnL--p~~vt--------e~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG 131 (852)
.+++.|.|.|+ +..+. +++|++.|++||.|.+|+|+.++ +..+++++|||||+|.+.++|.+|+..|||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~-~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPV-DGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCB-TTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccC-CCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 35778999998 33333 36899999999999999998532 112346889999999999999999999999
Q ss_pred ceecCeEEEEeecc
Q 003053 132 VVVYEYELKIGWGK 145 (852)
Q Consensus 132 ~~l~G~~l~V~~ak 145 (852)
..++|+.|+|.|+.
T Consensus 82 ~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 82 RKFANRVVVTKYCD 95 (105)
T ss_dssp CEETTEECEEEEEC
T ss_pred CEeCCCEEEEEEeC
Confidence 99999999999874
No 211
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.16 E-value=1.5e-11 Score=112.64 Aligned_cols=72 Identities=10% Similarity=0.155 Sum_probs=63.9
Q ss_pred EcCCCCCCCHHHHHHHh------------ccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecC
Q 003053 69 VGNLSPQVDENFLLRTF------------GRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 136 (852)
Q Consensus 69 VgnLp~~vte~~L~~~F------------~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G 136 (852)
+.||+..+++++|++.| ++||.|.+|.|+. +. +++++|||||+|.+.++|++|+..|||..++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~---~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCD---NL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECC---SS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEe---CC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 56788888888887777 9999999999984 32 46889999999999999999999999999999
Q ss_pred eEEEEeec
Q 003053 137 YELKIGWG 144 (852)
Q Consensus 137 ~~l~V~~a 144 (852)
+.|+|.|+
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 99999986
No 212
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.14 E-value=4.1e-11 Score=131.83 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=67.6
Q ss_pred CCCcceEEEcC--CCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceec---
Q 003053 61 DPQTTNLYVGN--LSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY--- 135 (852)
Q Consensus 61 ~~~~~tLfVgn--Lp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~--- 135 (852)
+..+.+||||| |+..+||++|+++|++||.|.+|.+. .+||||||+|.+.++|++|++.|||+.+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~---------~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP---------PNKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC---------TTCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe---------CCCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 45678999999 57899999999999999999998765 25799999999999999999999999983
Q ss_pred Ce--EEEEeeccCC
Q 003053 136 EY--ELKIGWGKSV 147 (852)
Q Consensus 136 G~--~l~V~~ak~~ 147 (852)
|+ .|.|.|....
T Consensus 86 g~~~~ly~~~~~~~ 99 (345)
T 3tht_A 86 GQKITLYLNFVEKV 99 (345)
T ss_dssp SCEEECEEEECSSE
T ss_pred CCceEEEEEEeecc
Confidence 44 6888888644
No 213
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=4.9e-10 Score=101.86 Aligned_cols=65 Identities=18% Similarity=0.370 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeeccCCC
Q 003053 74 PQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVA 148 (852)
Q Consensus 74 ~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak~~~ 148 (852)
..+++++|+++|++||.|..|.|+ ++++|||||+|.+.++|+.|+..++| +.|++|+|.|+++.+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~--------~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS--------SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE--------SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc--------cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 568999999999999999999987 26889999999999999999998655 679999999998653
No 214
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.08 E-value=2.4e-10 Score=107.03 Aligned_cols=83 Identities=19% Similarity=0.201 Sum_probs=69.6
Q ss_pred CcceEEEcCCCC--CC---CHHHHHHHhccCCCeeEEEEeccCC-ccccCCcccEEEEEECCHHHHHHHHHHhCCceecC
Q 003053 63 QTTNLYVGNLSP--QV---DENFLLRTFGRFGPIASVKIMWPRT-EEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE 136 (852)
Q Consensus 63 ~~~tLfVgnLp~--~v---te~~L~~~F~~fG~I~~vki~~pr~-d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G 136 (852)
.+++|+|.|+-. ++ -+++|++.|++||.|.+|+|+.++. ...+++++||+||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 467899999842 22 3589999999999999999996331 12356788999999999999999999999999999
Q ss_pred eEEEEeecc
Q 003053 137 YELKIGWGK 145 (852)
Q Consensus 137 ~~l~V~~ak 145 (852)
+.|+|.|..
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999874
No 215
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=98.98 E-value=2.8e-10 Score=110.70 Aligned_cols=129 Identities=17% Similarity=0.341 Sum_probs=101.7
Q ss_pred HHHHHHHHHhc-----ccCHHHHHHHHHHHHhccccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCC-----C
Q 003053 327 RDEFEDMLRAL-----TLERSQIKEAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSA-----P 396 (852)
Q Consensus 327 ~~~l~~lL~~L-----t~tr~sI~~~~~w~l~h~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~-----~ 396 (852)
.++|+..|+.| ..++..|.....||++|......||+.|.+.+. .++...||..||+|..|+.|+.. +
T Consensus 3 v~ef~~~L~sL~~lkp~iS~skI~~LT~~A~~nv~~~~~iv~~l~~~ik--k~p~~hKL~~LYVvDSIvR~~~~~~~k~g 80 (157)
T 3clj_A 3 FQNFVATLESFKDLKSGISGSRIKKLTTYALDHIDIESKIISLIIDYSR--LCPDSHKLGSLYIIDSIGRAYLDETRSNS 80 (157)
T ss_dssp HHHHHHHHHGGGGCSSSCCHHHHHHHHHHHHHTGGGHHHHHHHHHHHHH--HSCGGGHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--hCCCcceeeeeeehHHHHHHHHHHHHhcC
Confidence 57899999988 468899999999999999999999999999986 45678999999999999999652 1
Q ss_pred C-CCc--hhhH---HHHHhhhHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhccCccccHHHHHHHHHHhcc
Q 003053 397 V-KNA--SAYR---TKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLR 465 (852)
Q Consensus 397 ~-~na--~~yr---~~fe~~Lp~if~~l~~~~~~~~~r~~a~~~k~kv~~vL~iWe~~~vf~~~~l~~L~~~f~~ 465 (852)
. .++ ..|. ..|...++.+|.. +|..+ .++.|.||.+||++|+...+||++.|+.|++.+..
T Consensus 81 ~~~~a~~gt~a~~v~~~~e~i~~l~~~---~~~~~-----~~~~k~Ki~klldiW~k~~~Fp~e~i~~i~~~~~~ 147 (157)
T 3clj_A 81 NSSSNKPGTCAHAINTLGEVIQELLSD---AIAKS-----NQDHKEKIRMLLDIWDRSGLFQKSYLNAIRSKCFA 147 (157)
T ss_dssp C----STTSHHHHHHHHHHHHHHHHHH---HHHHS-----CHHHHHHHHHHHHHHHHHTTTTTSCCTTTTSHHHH
T ss_pred CccCCCCccHHHHHHHHHHHHHHHHHH---HHHcC-----CHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHhhh
Confidence 1 000 2242 3467777776643 33322 36889999999999999999999999888877643
No 216
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.87 E-value=6.8e-09 Score=96.55 Aligned_cols=76 Identities=11% Similarity=0.105 Sum_probs=63.8
Q ss_pred CcceEEEcCCCCCCC----------HHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCc
Q 003053 63 QTTNLYVGNLSPQVD----------ENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGV 132 (852)
Q Consensus 63 ~~~tLfVgnLp~~vt----------e~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~ 132 (852)
.++.|.|.|+=..-. +++|++.|++||.|.+|.|.. + ..+|||||.|.+.++|.+|+..|||.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~---~----~~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDK---N----SAQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECT---T----CTTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEec---C----CCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 456788888743211 257899999999999999873 2 25899999999999999999999999
Q ss_pred eecCeEEEEeecc
Q 003053 133 VVYEYELKIGWGK 145 (852)
Q Consensus 133 ~l~G~~l~V~~ak 145 (852)
.++|+.|+|.|+.
T Consensus 79 ~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 79 WFAGKMITAAYVP 91 (114)
T ss_dssp EETTEECEEEEEC
T ss_pred EECCEEEEEEEEc
Confidence 9999999999975
No 217
>1x4p_A Putative splicing factor, arginine/serine-rich 14; SURP domain, SFRS14 protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=98.76 E-value=6.7e-10 Score=89.57 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=49.2
Q ss_pred cchhhHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccccccCCCCCccceeeeeeeccc
Q 003053 209 RHLRHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQ 266 (852)
Q Consensus 209 ~~~~~~Id~~a~~V~~~G~~FE~~~~~~~~~np~f~FL~d~~~~~h~YYrwkl~~~~~ 266 (852)
++++.+|+|||.||+..|++-+++.- .++||.|.||||.+|.+|.||+.||.++..
T Consensus 5 ~~~~~~ieKLa~fVaeGgpe~~~~a~--~k~nPaf~FL~D~~S~eykYYr~KlaE~r~ 60 (66)
T 1x4p_A 5 SSGVGTIDQLVKRVIEGSLSPKERTL--LKEDPAYWFLSDENSLEYKYYKLKLAEMQR 60 (66)
T ss_dssp CCSSHHHHHHHHHHHHTCSCHHHHHH--HHHSGGGCTTTCCSSSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCCcHHHHHH--cccCCceeeeeCCCcHHHHHHHHHHHHHHh
Confidence 56788999999999999999666655 578999999999999999999999987653
No 218
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.69 E-value=3.5e-08 Score=87.16 Aligned_cols=74 Identities=15% Similarity=0.263 Sum_probs=61.6
Q ss_pred CCcceEEEcCCCC----CCCH----HHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCce
Q 003053 62 PQTTNLYVGNLSP----QVDE----NFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVV 133 (852)
Q Consensus 62 ~~~~tLfVgnLp~----~vte----~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~ 133 (852)
|...||+|..++. +.-. .+|.+.|++||.|..++|+. +.+||+|.+.++|.+|++ |||..
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-----------d~~fVtF~d~~sAlaAi~-mnG~~ 72 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-----------DKMWVTFLEGSSALNVLS-LNGKE 72 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-----------SSEEEEESSHHHHHHGGG-GTTCE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-----------CCEEEEECChHHHHHHHh-cCCeE
Confidence 4556888887762 3323 57999999999999999993 228999999999999998 99999
Q ss_pred ecCeEEEEeeccCC
Q 003053 134 VYEYELKIGWGKSV 147 (852)
Q Consensus 134 l~G~~l~V~~ak~~ 147 (852)
++|+.|+|.++++.
T Consensus 73 v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 73 LLNRTITIALKSPS 86 (91)
T ss_dssp ETTEEEEEEECCCS
T ss_pred eCCeEEEEEeCCCC
Confidence 99999999988753
No 219
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=6.4e-08 Score=90.60 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=64.3
Q ss_pred CCcceEEEcCCCCC-CCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECC-HHHHHHHHHHhC--CceecCe
Q 003053 62 PQTTNLYVGNLSPQ-VDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN-RADGQAAKDEMQ--GVVVYEY 137 (852)
Q Consensus 62 ~~~~tLfVgnLp~~-vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~-~~~A~~Ai~~ln--G~~l~G~ 137 (852)
+.++-|||+||+.. +++++|+++|++||.|..|.++. ....|||.|.+ ..+|..|+..|| |..|.|.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~---------g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVR---------GAKEGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCT---------TCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEec---------CCCEEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 56889999999999 99999999999999999999983 23469999999 899999999995 7788998
Q ss_pred EEEEee
Q 003053 138 ELKIGW 143 (852)
Q Consensus 138 ~l~V~~ 143 (852)
.+++..
T Consensus 87 ~~~~ev 92 (121)
T 1owx_A 87 EVTWEV 92 (121)
T ss_dssp SEEEEE
T ss_pred EEEEEE
Confidence 877753
No 220
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.40 E-value=3.2e-07 Score=94.59 Aligned_cols=70 Identities=20% Similarity=0.148 Sum_probs=61.6
Q ss_pred CCHHHHHHHhccCCCeeEEEEeccC-CccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEEEEeecc
Q 003053 76 VDENFLLRTFGRFGPIASVKIMWPR-TEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGK 145 (852)
Q Consensus 76 vte~~L~~~F~~fG~I~~vki~~pr-~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l~V~~ak 145 (852)
-.+++|.+.|++||.|.+|+|..+. .+..+++++|++||+|.+.++|.+|+..|||..++|+.|.+.|..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3457899999999999999998543 234677899999999999999999999999999999999999863
No 221
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.36 E-value=4.6e-07 Score=80.48 Aligned_cols=72 Identities=26% Similarity=0.373 Sum_probs=60.4
Q ss_pred CCCcceEEEcCCCCC------CCH---HHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCC
Q 003053 61 DPQTTNLYVGNLSPQ------VDE---NFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQG 131 (852)
Q Consensus 61 ~~~~~tLfVgnLp~~------vte---~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG 131 (852)
.|...||+|..++.. .++ .+|.+.|++||.|..|+|.. |. +||+|.+.++|.+||+ |||
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~---d~--------~fVtF~d~~sAl~AI~-ldG 79 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQ---GQ--------MLVTFADSHSALSVLD-VDG 79 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEET---TE--------EEEECSCSHHHHHHHH-GGG
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEec---Cc--------EEEEEcChHHHHHHHh-cCC
Confidence 345678999988743 232 46899999999999999994 22 9999999999999998 999
Q ss_pred ceecCeEEEEeec
Q 003053 132 VVVYEYELKIGWG 144 (852)
Q Consensus 132 ~~l~G~~l~V~~a 144 (852)
..++|+.|+|.+-
T Consensus 80 ~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 80 MKVKGRAVKISGP 92 (95)
T ss_dssp SEETTEEEEEECC
T ss_pred eeeCCeEEEEecc
Confidence 9999999999864
No 222
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=98.15 E-value=5e-07 Score=87.22 Aligned_cols=51 Identities=14% Similarity=0.188 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccccccCCCCCccceeeeeeecc
Q 003053 212 RHVIDTLALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFA 265 (852)
Q Consensus 212 ~~~Id~~a~~V~~~G~~FE~~~~~~~~~np~f~FL~d~~~~~h~YYrwkl~~~~ 265 (852)
..||.+||.|||++|. |+..|++++. ||+|.||. +.+++|.||...+.++.
T Consensus 8 ldIIklTA~FvArnG~-F~~~L~~re~-npqF~FL~-p~h~l~~~F~~lv~qY~ 58 (152)
T 4dgw_B 8 MEVIKLTARYYAKDKS-IVEQMISKDG-EARLNFMN-SSHPLHKTFTDFVAQYK 58 (152)
T ss_dssp HHHHHHHHHHHTTTSS-HHHHHHHHTC-CTTSGGGS-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHheecCH-HHHHHHHhcc-CcccccCC-CCCccHHHHHHHHHHHH
Confidence 4799999999999999 9999999999 99999996 89999999999885443
No 223
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.81 E-value=5.2e-05 Score=68.46 Aligned_cols=77 Identities=12% Similarity=0.161 Sum_probs=64.8
Q ss_pred cceEEEcCCCCCC-CH----HHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeE
Q 003053 64 TTNLYVGNLSPQV-DE----NFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 138 (852)
Q Consensus 64 ~~tLfVgnLp~~v-te----~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~ 138 (852)
.++|+|.||+..| .. +.++++|..|+++.....+ ++-.-..|.|.+.++|.+|...|+|..++|+.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l---------kSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~ 75 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF---------KSFKRVRINFSNPLSAADARLRLHKTEFLGKE 75 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE---------TTTTEEEEECSSTTHHHHHHHTSTTSEETTEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec---------CcceEEEEEeCChHHHHHHHHHhccceecCce
Confidence 3589999998865 32 4678999999999988777 34445689999999999999999999999999
Q ss_pred EEEeeccCCCC
Q 003053 139 LKIGWGKSVAL 149 (852)
Q Consensus 139 l~V~~ak~~~~ 149 (852)
|+|.||++..+
T Consensus 76 ~r~YFgq~~~~ 86 (104)
T 1wey_A 76 MKLYFAQTLHI 86 (104)
T ss_dssp CEEECCCCSSC
T ss_pred eEEEecCCCCC
Confidence 99999985543
No 224
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00027 Score=64.16 Aligned_cols=70 Identities=13% Similarity=0.103 Sum_probs=64.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHhccC-----CCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeE
Q 003053 64 TTNLYVGNLSPQVDENFLLRTFGRF-----GPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYE 138 (852)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~f-----G~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~ 138 (852)
..+|-+-|||..|+...++.+...| |.|..+.+.. ..+-|+|+|.+...|-+|.-+|||..|.|+.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p---------DH~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS---------DFNGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET---------TTTEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec---------CCCceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 5689999999999999999999999 9999998883 3477999999999999999999999999999
Q ss_pred EEEe
Q 003053 139 LKIG 142 (852)
Q Consensus 139 l~V~ 142 (852)
|+|+
T Consensus 92 Lr~g 95 (117)
T 2l9w_A 92 IRSG 95 (117)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9996
No 225
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=97.48 E-value=3.1e-05 Score=71.33 Aligned_cols=62 Identities=15% Similarity=0.260 Sum_probs=28.5
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
||||||.| +|+..|||..+.++ +|+|.++....... ..........++|||+|||+
T Consensus 45 kg~afV~f~~~~~A~~Ai~~l~~~~~~g~--~i~V~~a~~~~~~~---------------~~~~~~~~~~~~lyv~Nl~~ 107 (115)
T 4f25_A 45 KGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGRFKSRKERE---------------AELGARAKEFTNVYIKNFGP 107 (115)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCEETTE--ECEEEESSCCCC-------------------------------------
T ss_pred CceEEEEECCHHHHHHHHHHcCCCEECCE--EEEEEECCCccccc---------------cccccccCCCCceEeCCCCC
Confidence 79999999 49999999999998 89998876532110 00111233567899999999
Q ss_pred CCCHHH
Q 003053 75 QVDENF 80 (852)
Q Consensus 75 ~vte~~ 80 (852)
.+|++.
T Consensus 108 ~~T~~a 113 (115)
T 4f25_A 108 GSTRAA 113 (115)
T ss_dssp ------
T ss_pred Cccccc
Confidence 999864
No 226
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=97.46 E-value=0.00018 Score=57.92 Aligned_cols=53 Identities=72% Similarity=1.118 Sum_probs=49.9
Q ss_pred CCcHHHHHHHHHhhhhhhhhhhhhhhhccCCcHHHHHHHHHHHhhhhhhcCCC
Q 003053 697 GMNEEQRQKLRRLEVSLIEYRESLEERGIKSSEEIEKKVAIHRKRLESEYGLA 749 (852)
Q Consensus 697 ~~~~~~~~k~~~~~~ai~k~~~~~~e~~~k~~ee~~kr~~~~~~~~~~~~~~~ 749 (852)
.|++++++|++++++++++.+.+|++++..+-++++.+|...|+++.++|+++
T Consensus 9 ~~~ee~r~klR~IEvk~me~rD~LEeqG~~~~~eI~~kV~~~RkkL~~~~~~~ 61 (61)
T 2e62_A 9 GMDEEQRQKRRRIEVALIEYRETLEEQGMKNPEEIERKVEINRKRLEVDYGLS 61 (61)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 67899999999999999999999999999988999999999999999998763
No 227
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=96.11 E-value=0.0033 Score=55.84 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=41.0
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
||||||.|. |+..|||..+.+. ++++.++...+...... . .........+||||||+.
T Consensus 37 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~V~~a~~~~~~~~~~---------~----~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 37 PGFAFVEFEDPRDAEDAVRGLDGKVICGS--RVRVELSTGMPRRSRFD---------R----PPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHSCSSSC--CCEEEESSSCCCSSCCC---------S----CCCSCCCCSCCCSCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCeECCc--EEEEEEccCCCCcccCC---------C----CCccccCCCceecCCCCC
Confidence 799999994 9999999999998 89999987754221111 0 001123467899999973
No 228
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.10 E-value=0.14 Score=45.15 Aligned_cols=80 Identities=13% Similarity=0.208 Sum_probs=58.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceec---C--eEE
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY---E--YEL 139 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~---G--~~l 139 (852)
++|.|.+||+.+||+++.+.++.+..+.....+. ......-..-.-|+|.|.+.+++..-.+.++|..+. | ...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~-G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFS-NDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEE-SCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeC-CccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 5789999999999999999999998776665542 111111122357899999999999999999999973 2 223
Q ss_pred EEeecc
Q 003053 140 KIGWGK 145 (852)
Q Consensus 140 ~V~~ak 145 (852)
.|.+|-
T Consensus 81 ~VE~AP 86 (91)
T 1uw4_A 81 IVEFAP 86 (91)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 466653
No 229
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.86 E-value=0.35 Score=43.50 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=56.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhcc-----CCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCe
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGR-----FGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEY 137 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~-----fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~ 137 (852)
...+|.|.|||+.++++.|.-+|+. -|.|.+|... . +-|+|+|.+...|++.+.. .-+.|+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~----------~-~~AvItF~d~~va~rVL~k-~~H~L~~~ 74 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL----------G-CGGVLTFREPADAERVLAQ-ADHELHGA 74 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE----------T-TEEEEEESSHHHHHHHHTC-SCCBSSSS
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc----------C-CcEEEEEcChHHHHHHhcC-CcceecCe
Confidence 4679999999999999999999986 2678888776 1 6789999999999998763 35678888
Q ss_pred EEEEe
Q 003053 138 ELKIG 142 (852)
Q Consensus 138 ~l~V~ 142 (852)
+|.|.
T Consensus 75 ~LsV~ 79 (104)
T 2dhx_A 75 QLSLR 79 (104)
T ss_dssp BCEEE
T ss_pred EEEEE
Confidence 88883
No 230
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.77 E-value=0.032 Score=49.63 Aligned_cols=57 Identities=16% Similarity=0.265 Sum_probs=44.7
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhC
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ 130 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ln 130 (852)
....||+-++|++....+|.++|+.||.| .|+++ .-..|||.|.+++.|..|+..++
T Consensus 14 ~r~HVf~l~FP~ewKt~DI~~lFs~fggv-~I~Wi----------dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWI----------DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEEECCTTCCHHHHHHHHTTTCSC-CCEEE----------ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEEeCChhhhhHHHHHHhhccCCE-EEEEE----------cCCeEEEEecCHHHHHHHHHhcc
Confidence 33444444999999999999999999943 35555 23579999999999999998763
No 231
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=94.68 E-value=0.0041 Score=56.61 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=46.2
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPSSRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSP 74 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~~r~~~~p~~~~~~~~~~~~~~~~~~~~~tLfVgnLp~ 74 (852)
||||||.|. |+..|||..+.+. ++.+.++.+.... .+++.
T Consensus 47 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~v~~a~~~~~~-------------------------------~~~~~ 93 (115)
T 3lqv_A 47 RGTAYVVYEDIFDAKNAVDHLSGFNVSNR--YLVVLYYNANRAF-------------------------------QKMDT 93 (115)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBSSSC--BCEEEECCHHHHT-------------------------------TTSCH
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCEECCe--EEEEEEecCChhh-------------------------------hhhhH
Confidence 799999993 9999999999998 8999887653111 35677
Q ss_pred CCCHHHHHHHhccCCC
Q 003053 75 QVDENFLLRTFGRFGP 90 (852)
Q Consensus 75 ~vte~~L~~~F~~fG~ 90 (852)
..++++|.++|++||.
T Consensus 94 ~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 94 KKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred hHhHHHHHHHHHHhCC
Confidence 8899999999999984
No 232
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.65 E-value=0.09 Score=48.63 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=55.5
Q ss_pred CcceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecC-eEEEE
Q 003053 63 QTTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYE-YELKI 141 (852)
Q Consensus 63 ~~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G-~~l~V 141 (852)
..+-|.|-+.|+.. -..+...|++||.|...... ...++-.|.|.++.+|++|+. .||..|+| .-|-|
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGV 91 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEE
Confidence 45678888999885 55677889999999987652 345899999999999999998 59999985 44555
Q ss_pred ee
Q 003053 142 GW 143 (852)
Q Consensus 142 ~~ 143 (852)
.+
T Consensus 92 ~p 93 (119)
T 1wwh_A 92 KP 93 (119)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 233
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=94.36 E-value=0.051 Score=42.68 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=35.6
Q ss_pred HhhcCChHHHHHHHHHcCccccCChHHHHHHHHhhHHHhh
Q 003053 515 ELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDAEK 554 (852)
Q Consensus 515 ~~~~~~~~~l~~~c~~~gl~~~~~~~~~~~rl~~~~~~~~ 554 (852)
.|.++-..+|+..|+.+||...|.+..||+||..+.+.+.
T Consensus 4 ~~~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~~~~ 43 (51)
T 1h1j_S 4 DYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEESK 43 (51)
T ss_dssp SGGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHSC
T ss_pred hHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHhcc
Confidence 4678889999999999999999999999999998876543
No 234
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.35 E-value=0.036 Score=49.48 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=42.6
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhC
Q 003053 67 LYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ 130 (852)
Q Consensus 67 LfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ln 130 (852)
++| ++|++..-.+|.++|+.||. ..|+++ .-..|||.|.+++.|..|+..+.
T Consensus 9 ~~l-~FP~ewKt~Di~~lFs~fgg-v~I~Wi----------dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 9 LHV-TFPKEWKTSDLYQLFSAFGN-IQISWI----------DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEE-ECCTTCCHHHHHHHTTTSEE-EEEEEE----------ETTEEEEEEEEECHHHHHHHHHT
T ss_pred EEE-eCChhhhhHHHHHHHhccCC-EEEEEE----------cCCeEEEEecCHHHHHHHHHhcc
Confidence 555 99999999999999999992 334444 23679999999999999999764
No 235
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=94.21 E-value=0.051 Score=45.87 Aligned_cols=39 Identities=21% Similarity=0.413 Sum_probs=35.5
Q ss_pred HhhcCChHHHHHHHHHcCccccCChHHHHHHHHhhHHHh
Q 003053 515 ELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDAE 553 (852)
Q Consensus 515 ~~~~~~~~~l~~~c~~~gl~~~~~~~~~~~rl~~~~~~~ 553 (852)
.|.++-..||+..|+.+||...|.+..||+||..+.+.+
T Consensus 25 ~l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~~ 63 (75)
T 2kvu_A 25 NLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQI 63 (75)
T ss_dssp TTTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcc
Confidence 577889999999999999999999999999999887665
No 236
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=92.36 E-value=0.15 Score=40.56 Aligned_cols=38 Identities=29% Similarity=0.496 Sum_probs=33.9
Q ss_pred hhcCChHHHHHHHHHcCccccCChHHHHHHHHhhHHHh
Q 003053 516 LMNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDAE 553 (852)
Q Consensus 516 ~~~~~~~~l~~~c~~~gl~~~~~~~~~~~rl~~~~~~~ 553 (852)
|.++-..+|...|+.+||...|.+..||+||..+-.-+
T Consensus 10 l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~~ 47 (55)
T 2do1_A 10 LHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEH 47 (55)
T ss_dssp TTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHT
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Confidence 56788999999999999999999999999999875544
No 237
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=91.96 E-value=0.14 Score=39.95 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=33.0
Q ss_pred HhhcCChHHHHHHHHHcCccccCChHHHHHHHHhhHH
Q 003053 515 ELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLED 551 (852)
Q Consensus 515 ~~~~~~~~~l~~~c~~~gl~~~~~~~~~~~rl~~~~~ 551 (852)
.|.+|-..+|+..|+.+||...|.+..||+||..+.+
T Consensus 9 ~~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~ 45 (50)
T 1zrj_A 9 DVRRLKVNELREELQRRGLDTRGLKAELAERLQAALS 45 (50)
T ss_dssp CGGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHC
T ss_pred CHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh
Confidence 3667889999999999999999999999999987653
No 238
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.81 E-value=0.11 Score=46.94 Aligned_cols=34 Identities=6% Similarity=0.019 Sum_probs=30.2
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPS 37 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~ 37 (852)
||||||.| .|+..|||..+.++ +|++.++.+.+.
T Consensus 63 ~G~afV~f~~~~~A~~Ai~~lng~~~~gr--~l~V~~a~~k~~ 103 (111)
T 2cpi_A 63 SASAYVTYIRSEDALRAIQCVNNVVVDGR--TLKASLGTTKYC 103 (111)
T ss_dssp CEEEEEEESSHHHHHHHHHHHTTEEETTE--EEEEESCCCCSC
T ss_pred CeEEEEEECcHHHHHHHHHHhCCCEECCE--EEEEEecccccc
Confidence 69999999 49999999999999 999999888653
No 239
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.41 E-value=0.12 Score=45.94 Aligned_cols=33 Identities=6% Similarity=-0.112 Sum_probs=29.8
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
.|||||.| +|++.|+|..+.++ +|++.++...+
T Consensus 46 gG~AfV~F~~~esA~~A~~~l~G~~l~gr--~i~v~~A~~~s 85 (96)
T 2diu_A 46 GCSAILRFINQDSAERAQKRMENEDVFGN--RIIVSFTPKNR 85 (96)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCCSSSS--CCEEESSCCSC
T ss_pred cCEEEEEECCHHHHHHHHHHhcCCccCCc--eEEEEecCCCc
Confidence 38999999 59999999999999 99999988753
No 240
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=91.10 E-value=0.071 Score=47.34 Aligned_cols=31 Identities=6% Similarity=0.076 Sum_probs=27.7
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
||||||.| +|+..|||..+.++ +|+|.++.+
T Consensus 61 kG~afV~f~~~~~A~~Ai~~lng~~~~gr--~l~V~~AkP 98 (99)
T 4fxv_A 61 LGYGFVNYVTAKDAERAINTLNGLRLQSK--TIKVSYARP 98 (99)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEECCB
T ss_pred cccEEEEECCHHHHHHHHHHhCCCEECCE--EEEEEEeeC
Confidence 69999999 49999999999998 999988754
No 241
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=90.79 E-value=0.15 Score=44.38 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=27.2
Q ss_pred cceEehhh-------hHHhhh-cceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAW-HVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m-~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| +|++.| ++..+.++ +|++.++.+.+
T Consensus 44 rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr--~i~V~~a~~~~ 84 (91)
T 2lxi_A 44 RGFAFVEFSHLQDATRWMEANQHSLNILGQ--KVSMHYSDPKP 84 (91)
T ss_dssp SSEEEEECSSHHHHHHHHHTTTTEEEETTE--EEEEECCCSCC
T ss_pred CceEEEEecCHHHHHHHHHhcCCCeEECCE--EEEEEEcCCCC
Confidence 79999999 388887 56789998 99999887653
No 242
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=90.69 E-value=0.084 Score=50.23 Aligned_cols=40 Identities=8% Similarity=-0.042 Sum_probs=36.4
Q ss_pred CCcccEEEEEECCHHHHHHHHHHh-CCceecCeEEEEeeccC
Q 003053 106 RRQRNCGFVAFMNRADGQAAKDEM-QGVVVYEYELKIGWGKS 146 (852)
Q Consensus 106 g~~rg~gFV~F~~~~~A~~Ai~~l-nG~~l~G~~l~V~~ak~ 146 (852)
..-+|+++|+|.+.++|++|+..| ||..++| .|.+.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 356899999999999999999999 9999999 999998764
No 243
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=90.65 E-value=0.1 Score=48.73 Aligned_cols=33 Identities=12% Similarity=0.247 Sum_probs=29.4
Q ss_pred CcceEehhhh-------HHhhhcceeccCCCCcEEEEeccCC
Q 003053 1 MRSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 1 ~r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
.||||||.|. |+..|||..+.++ +|+|.++...
T Consensus 71 ~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr--~l~V~~a~~~ 110 (127)
T 2a3j_A 71 NSGKAYIVFATQESAQAFVEAFQGYPFQGN--PLVITFSETP 110 (127)
T ss_dssp SCCCEEEEESSHHHHHHHHHHSTTCCCTTS--CCEEEECCCC
T ss_pred cCCEEEEEECCHHHHHHHHHHHCCCEeCCC--EEEEEEccCc
Confidence 4899999993 9999999999999 9999998764
No 244
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=90.56 E-value=0.23 Score=44.78 Aligned_cols=34 Identities=9% Similarity=0.161 Sum_probs=29.7
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPS 37 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~ 37 (852)
||||||.| .|+..|||..+.++ +|+|.++...+.
T Consensus 57 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~V~~a~~~~~ 97 (115)
T 2dgo_A 57 KGYGFVSFFNKWDAENAIQQMGGQWLGGR--QIRTNWATRKPP 97 (115)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTCEETTE--ECEEEESSCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCE--EEEEEEccCCCC
Confidence 68999999 49999999999998 999999887543
No 245
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.00 E-value=0.21 Score=43.82 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=29.6
Q ss_pred CcceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCC
Q 003053 1 MRSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 1 ~r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
+||||||.|. |+..|||..+.++ +|++.++.+..
T Consensus 50 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~v~~a~~~~ 90 (99)
T 2cpd_A 50 IRDYAFVHFSNREDAVEAMKALNGKVLDGS--PIEVTLAKPVD 90 (99)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHSSEEETTE--EEEEECCCCCC
T ss_pred eCCeEEEEeCCHHHHHHHHHHhCCCEeCCc--EEEEEECCCCC
Confidence 5899999994 9999999999998 99999887643
No 246
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=89.75 E-value=0.4 Score=42.27 Aligned_cols=35 Identities=6% Similarity=0.106 Sum_probs=30.4
Q ss_pred CcceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCC
Q 003053 1 MRSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPS 37 (852)
Q Consensus 1 ~r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~ 37 (852)
+||||||.| .|+..|||..+.+. +|++.++.+...
T Consensus 44 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~a~~~~~ 85 (103)
T 2dgu_A 44 LKDYAFIHFDERDGAVKAMEEMNGKDLEGE--NIEIVFAKPPDQ 85 (103)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHTTEEETTE--EEEEEECCCCCC
T ss_pred ECCEEEEEeCCHHHHHHHHHHHCCCccCCC--EEEEEEcCCCcc
Confidence 589999999 49999999999998 999999877543
No 247
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=89.67 E-value=0.13 Score=46.99 Aligned_cols=33 Identities=9% Similarity=-0.024 Sum_probs=28.3
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|++.|+|..+.++ +|+|.++...+
T Consensus 67 rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr--~i~V~~a~~~p 106 (111)
T 2jvr_A 67 DGTGALEFPSEEILVEALERLNNIEFRGS--VITVERDDNPP 106 (111)
T ss_dssp SCCEEEEESSHHHHHHHHHHTTTEEETTE--EEEEEESCC--
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCe--EEEEEECCCCC
Confidence 79999999 49999999999999 99999887643
No 248
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.36 E-value=0.26 Score=43.38 Aligned_cols=33 Identities=12% Similarity=0.050 Sum_probs=29.2
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..|||..+.++ +|++.++....
T Consensus 55 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~V~~a~~~~ 94 (103)
T 2cqi_A 55 DPYCFVEFYEHRDAAAALAAMNGRKILGK--EVKVNWATTPS 94 (103)
T ss_dssp CCEEEEEESSHHHHHHHHHHHTTEEETTE--EEEEEECCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCCcCCC--eEEEEECCCCc
Confidence 69999999 49999999999998 99999987754
No 249
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.20 E-value=0.29 Score=42.92 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=29.2
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.|. |+..|||..+.++ +|+|.++.+.+
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~v~~a~~~~ 92 (101)
T 2fc9_A 53 KGYAFIEFASFEDAKEALNSCNKREIEGR--AIRLELQGPRG 92 (101)
T ss_dssp CSEEEEECSSHHHHHHHHHHTSSEEETTE--EEEEEECSSCC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCEeCCe--EEEEEEcCCCC
Confidence 799999994 9999999999998 99999987753
No 250
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=89.18 E-value=0.11 Score=44.80 Aligned_cols=33 Identities=3% Similarity=-0.084 Sum_probs=26.2
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.|. |+..|||..+.++ .|++.++.+.+
T Consensus 45 kG~afV~f~~~~~a~~Ai~~l~g~~~~gr--~i~V~~~~~~~ 84 (90)
T 3p5t_L 45 KGFALVGVGSEASSKKLMDLLPKRELHGQ--NPVVTPSNKLE 84 (90)
T ss_dssp EEEEEECC-CHHHHHHHHHHGGGSCSSSC--CCEECCC----
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCeeCCE--EEEEEECCCCc
Confidence 799999994 9999999999999 89998877643
No 251
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.14 E-value=0.22 Score=43.60 Aligned_cols=32 Identities=9% Similarity=0.037 Sum_probs=28.7
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+..|||..+.++ +|++.++.+.
T Consensus 52 rg~afV~f~~~~~A~~Ai~~l~g~~~~gr--~l~V~~a~~~ 90 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGAVNSLHRYKIGSK--KILVSLATGA 90 (96)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTEEETTE--EEEEEECCCS
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEECCe--EEEEEEcCCC
Confidence 79999999 49999999999999 9999998664
No 252
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.13 E-value=0.3 Score=42.86 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=29.2
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..|||..+.++ +|++.++.+.+
T Consensus 54 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~V~~a~~~~ 93 (102)
T 2cqb_A 54 RGFAFVEFELAEDAAAAIDNMNESELFGR--TIRVNLAKPMR 93 (102)
T ss_dssp SSEEEECCSSHHHHHHHHHHHTTEEETTE--EEEEEECCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCc--EEEEEeCCCCC
Confidence 79999999 39999999999999 99999987754
No 253
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.90 E-value=0.26 Score=42.53 Aligned_cols=32 Identities=3% Similarity=0.048 Sum_probs=28.4
Q ss_pred cceEehhhh-------HHhhhcc-eeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLFS-------FFNAWHV-IYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g-~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.|. |+..||| ..+.+. ++++.++.+.
T Consensus 44 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~--~l~v~~a~~~ 83 (93)
T 2cqh_A 44 SGYAFVDYPDQNWAIRAIETLSGKVELHGK--IMEVDYSVSK 83 (93)
T ss_dssp TTEEEECCSCHHHHHHHHHHHTTTCEETTE--ECEEEECCCC
T ss_pred CCEEEEEECCHHHHHHHHHHccCCeeECCE--EEEEEEccCc
Confidence 799999993 9999999 999998 9999998764
No 254
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.54 E-value=0.39 Score=41.89 Aligned_cols=33 Identities=9% Similarity=0.163 Sum_probs=29.1
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..|||..+.++ +|.+.++...+
T Consensus 50 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~V~~a~~~~ 89 (99)
T 1whw_A 50 KGFAFVTFMFPEHAVKAYAEVDGQVFQGR--MLHVLPSTIKK 89 (99)
T ss_dssp CSEEEEEESSHHHHHHHHHHTTTEESSSC--EEEEEECCCCS
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEECCc--EEEEEEcCCCc
Confidence 69999999 49999999999998 99999987753
No 255
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.47 E-value=0.27 Score=44.34 Aligned_cols=32 Identities=3% Similarity=-0.161 Sum_probs=28.6
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.|. |+..|||..+.++ +|.+.++.+.
T Consensus 64 ~G~afV~f~~~~~A~~Ai~~lng~~~~gr--~l~v~~a~~~ 102 (112)
T 2dit_A 64 DGVASVSFRDPEEADYCIQTLDGRWFGGR--QITAQAWDGT 102 (112)
T ss_dssp TCEEEEECSCHHHHHHHHHHSTTCEETTE--ECEEEECCSC
T ss_pred CEEEEEEECCHHHHHHHHHHcCCCEECCc--EEEEEEeCCC
Confidence 899999994 9999999999998 9999987664
No 256
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=88.44 E-value=0.2 Score=44.02 Aligned_cols=30 Identities=10% Similarity=0.062 Sum_probs=27.8
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEecc
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNL 33 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~ 33 (852)
||||||.| .|+..||+..+.++ +|++.+++
T Consensus 43 kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr--~I~V~~A~ 79 (89)
T 2wbr_A 43 QGIALCKYTTREEANKAQMALNNCVLANT--TIFAESPS 79 (89)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTEEETTE--EEEEECCC
T ss_pred CcEEEEEECCHHHHHHHHHHhcCCEECCc--EEEEEECC
Confidence 89999999 49999999999999 99998884
No 257
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=88.39 E-value=0.2 Score=44.31 Aligned_cols=31 Identities=10% Similarity=0.199 Sum_probs=26.4
Q ss_pred cceEehhh-------hHHhhhcce----eccCCCCcEEEEeccC
Q 003053 2 RSFSFFLF-------SFFNAWHVI----YVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~----~ls~~~~pi~~~~~~~ 34 (852)
||||||.| +|++.|||. .+.++ +|.|.++.+
T Consensus 53 rG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr--~i~V~~Aks 94 (95)
T 2lkz_A 53 RGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK--TIGVDFAKS 94 (95)
T ss_dssp SSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE--EEEEEECCC
T ss_pred ceEeEEEECCHHHHHHHHHHhcCCCCCceECCE--EEEEEEccC
Confidence 79999999 499999985 58888 899988765
No 258
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=88.03 E-value=0.35 Score=46.12 Aligned_cols=38 Identities=5% Similarity=-0.005 Sum_probs=29.4
Q ss_pred EEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceec
Q 003053 93 SVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY 135 (852)
Q Consensus 93 ~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~ 135 (852)
.++|+. + ...++|||||+|.+.++|++|+..+++....
T Consensus 2 ~~kl~l---n--~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~ 39 (158)
T 2kn4_A 2 QYKLIL---N--GKTLKGETTTEAVDAATAEKVFKQYANDNGV 39 (158)
T ss_dssp EEEEEE---E--CSSCEEEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred cEEEEe---c--CccccchhHHHHHHHHhHHHHHHhhcccCCC
Confidence 456663 2 3368899999999999999999998875433
No 259
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.97 E-value=0.45 Score=42.59 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=27.9
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+..|||..+.++ +|.+.++...
T Consensus 56 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~a~~~ 94 (114)
T 2do0_A 56 RGIGTVTFEQSIEAVQAISMFNGQLLFDR--PMHVKMDERA 94 (114)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEECSCC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCEeCCC--EEEEEEcccC
Confidence 68999999 49999999999998 8999887653
No 260
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=87.89 E-value=0.25 Score=42.91 Aligned_cols=33 Identities=9% Similarity=0.094 Sum_probs=29.0
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..|||..+.++ +|++.++.+..
T Consensus 53 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~a~~~~ 92 (96)
T 1fjc_A 53 KGIAYIEFKSEADAEKNLEEKQGAEIDGR--SVSLYYTGEKG 92 (96)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTEEEETTE--EEEEEECSSSC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCe--EEEEEEcCCCC
Confidence 79999999 49999999999999 89999887643
No 261
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.81 E-value=0.37 Score=41.58 Aligned_cols=33 Identities=9% Similarity=0.129 Sum_probs=29.2
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..|||..+.++ +|++.++....
T Consensus 47 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~V~~a~~~~ 86 (95)
T 2dnz_A 47 KGYGFITFSDSECARRALEQLNGFELAGR--PMRVGHVTERL 86 (95)
T ss_dssp CSEEEEEESCHHHHHHHHHHHTTCCSSSS--CCEEEESSCCC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCeeCCc--EEEEEEccccc
Confidence 79999999 49999999999998 99999987753
No 262
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.64 E-value=0.35 Score=42.18 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=28.5
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+..|||..+.+. +|++.++.+.
T Consensus 49 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~--~l~v~~a~~~ 87 (97)
T 1x5p_A 49 RNCAFVTYEKMESADQAVAELNGTQVESV--QLKVNIARKQ 87 (97)
T ss_dssp TTEEEEEESSHHHHHHHHHHTTTEEETTE--EEEEECCSSC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCe--EEEEEECCCC
Confidence 79999999 49999999999988 9999988764
No 263
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.60 E-value=0.38 Score=43.18 Aligned_cols=33 Identities=9% Similarity=0.043 Sum_probs=29.2
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.|. |+..|||..+.++ +|++.++.+..
T Consensus 67 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~--~l~v~~a~~~~ 106 (115)
T 2cpx_A 67 RGQAFITFPNKEIAWQALHLVNGYKLYGK--ILVIEFGKNKK 106 (115)
T ss_dssp CSEEEEECSSHHHHHHHHHHSTTCBCSSC--BCEEEECCCCS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEeCCc--EEEEEEccCCC
Confidence 799999994 9999999999988 99999987753
No 264
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=87.34 E-value=0.29 Score=55.55 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=39.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHH
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKD 127 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~ 127 (852)
.+|||. .+..+++.+|.++|++||+|.++... . ..+.|+.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~-----~---~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFY-----E---SFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEE-----C---SSSEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEE-----c---cCCeEEEEEeCCHHHHHHHHh
Confidence 579997 79999999999999999999998665 1 223799999999998886654
No 265
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.31 E-value=0.33 Score=42.55 Aligned_cols=33 Identities=18% Similarity=0.026 Sum_probs=28.9
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..|||..+.++ +|+|.++.+..
T Consensus 54 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~V~~a~~~~ 93 (102)
T 2fc8_A 54 KGFGFVDFNSEEDAKAAKEAMEDGEIDGN--KVTLDWAKPKG 93 (102)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTCEETTE--ECEEEECCCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCe--EEEEEEecCCC
Confidence 69999999 49999999999998 99999987743
No 266
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=87.23 E-value=1.3 Score=39.37 Aligned_cols=71 Identities=11% Similarity=0.163 Sum_probs=49.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceec
Q 003053 64 TTNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVY 135 (852)
Q Consensus 64 ~~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~ 135 (852)
+-+|.|..||+.+||+++.+.++..-.+.....+ |.........-.-|+|.|.+.++...-.+.++|..+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv-~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFF-AADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCC-CCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEe-CCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 4579999999999999988887766444322222 1111111112246899999999999999999999873
No 267
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=87.16 E-value=0.22 Score=44.88 Aligned_cols=31 Identities=13% Similarity=-0.010 Sum_probs=27.6
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
||||||.| .|+.+|||.++.++ +|.+.++..
T Consensus 56 ~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr--~i~v~~a~~ 93 (105)
T 2pe8_A 56 AVRIFLEFERVESAIKAVVDLNGRYFGGR--VVKACFYNL 93 (105)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEECCH
T ss_pred cEEEEEEECCHHHHHHHHHHHCCCEECCc--EEEEEEcCH
Confidence 79999999 49999999999999 888888654
No 268
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.11 E-value=0.29 Score=42.03 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=27.7
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+. |||..+.++ +|.+.++.+.
T Consensus 50 ~g~afV~f~~~~~a~~A~~-~~g~~~~gr--~i~v~~a~~~ 87 (91)
T 2dgw_A 50 TGYIFVDFSNEEEVKQALK-CNREYMGGR--YIEVFREKSG 87 (91)
T ss_dssp EEEEEEECSSHHHHHHHHH-SCSEEETTE--EEEEEEESSC
T ss_pred ceEEEEEECCHHHHHHHHH-hCCceeCCc--EEEEEECCcC
Confidence 78999999 4999 999999999 9999988775
No 269
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=87.09 E-value=0.21 Score=45.22 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=28.4
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.|. |+..|||..+.++ +|++.++...
T Consensus 48 rG~aFV~f~~~~~A~~Ai~~lng~~~~gr--~i~V~~a~~~ 86 (110)
T 3s8s_A 48 LGLARVLFTSTRGAKETVKNLHLTSVMGN--IIHAQLDIKG 86 (110)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEECSTT
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCEECCe--EEEEEECCCC
Confidence 799999994 9999999999999 9999887653
No 270
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=86.99 E-value=0.34 Score=42.49 Aligned_cols=32 Identities=16% Similarity=0.057 Sum_probs=27.8
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+. |+|..+.++ +|++.++.+..
T Consensus 58 ~g~afV~f~~~~~a~~A~~-l~g~~~~g~--~l~V~~a~~~~ 96 (101)
T 1fj7_A 58 RKFGYVDFESAEDLEKALE-LTGLKVFGN--EIKLEKPKGRD 96 (101)
T ss_dssp TTEEEEEESSHHHHHHHHH-GGGCCBTTB--CCEEECCSCCC
T ss_pred CcEEEEEECCHHHHHHHHh-cCCcEECCc--EEEEEEcCCCC
Confidence 79999999 4898 999999998 99999887643
No 271
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.97 E-value=0.41 Score=42.08 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=29.1
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
+|||||.| .|+..|||..+.+. +|.+.++.+..
T Consensus 55 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~V~~a~~~~ 94 (103)
T 2d9p_A 55 KGFGFVCFSSPEEATKAVTEMNGRIVATK--PLYVALAQRKE 94 (103)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCBSSSS--BCEEEECSSCC
T ss_pred CEEEEEEECCHHHHHHHHHHhCCCEeCCc--EEEEEEecccc
Confidence 69999999 49999999999998 99999987743
No 272
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.96 E-value=0.37 Score=43.01 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=29.1
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..|||..+.+. +|++.++...+
T Consensus 61 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~a~~~~ 100 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNGTTIEGH--VVKCYWGKESP 100 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEECCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCc--EEEEEecCCCC
Confidence 79999999 49999999999998 99999987754
No 273
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.95 E-value=0.41 Score=42.20 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=29.2
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..|||..+.+. +|++.++.+.+
T Consensus 57 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~a~~~~ 96 (105)
T 1x5u_A 57 QGYGFVEFLSEEDADYAIKIMDMIKLYGK--PIRVNKASAHN 96 (105)
T ss_dssp CSCEEEEESSHHHHHHHHHHSSSCBCSSC--BCEEEETTTTS
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCe--EEEEEECCCCC
Confidence 68999999 49999999999998 99999987753
No 274
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.94 E-value=0.52 Score=40.55 Aligned_cols=34 Identities=6% Similarity=0.100 Sum_probs=29.6
Q ss_pred CcceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCC
Q 003053 1 MRSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 1 ~r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
+|+||||.|. |+..|||..+.++ ++++.++.+.+
T Consensus 43 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~V~~a~~~~ 83 (92)
T 2dgt_A 43 VKDYAFVHMERAEDAVEAIRGLDNTEFQGK--RMHVQLSTSRL 83 (92)
T ss_dssp CSSEEEEEESCHHHHHHHHHHHTTEEETTE--EEEEEESSCCC
T ss_pred ECCEEEEEECCHHHHHHHHHHhCCCeeCCc--EEEEEEccCCC
Confidence 5789999994 9999999999998 99999987743
No 275
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.78 E-value=0.37 Score=42.17 Aligned_cols=32 Identities=0% Similarity=-0.004 Sum_probs=28.5
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+..|||..+.+. +|++.++.+.
T Consensus 58 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~a~~~ 96 (100)
T 2do4_A 58 KGLAYVEYENESQASQAVMKMDGMTIKEN--IIKVAISNSG 96 (100)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTEESSSC--EEEEEECCCC
T ss_pred EeEEEEEECCHHHHHHHHHHhCCCEECCE--EEEEEECCCC
Confidence 69999999 49999999999998 9999998764
No 276
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.67 E-value=0.35 Score=42.22 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=28.5
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+..|||..+.++ +|++.++.+.
T Consensus 56 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~V~~a~~~ 94 (97)
T 2e5j_A 56 RRRAFLHYPDSAAAQQAVSCLQGLRLGTD--TLRVALARQQ 94 (97)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCCSSSS--CCEEEECCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCEECCc--EEEEEEcCCC
Confidence 79999999 49999999999998 8999887764
No 277
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.61 E-value=0.49 Score=40.52 Aligned_cols=33 Identities=6% Similarity=0.134 Sum_probs=29.1
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..|||..+.+. +|++.++.+.+
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~v~~a~~~~ 81 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKLHGV--NINVEASKNKS 81 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBCSSC--BCEEECSSCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCccCCc--EEEEEECCCCC
Confidence 79999999 49999999999998 99999987753
No 278
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=86.58 E-value=0.34 Score=42.17 Aligned_cols=33 Identities=9% Similarity=0.065 Sum_probs=28.7
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..|||..+.+. +|.+.++....
T Consensus 50 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~V~~a~~~~ 89 (98)
T 2cpf_A 50 MGFGFVEYKKPEQAQKALKQLQGHTVDGH--KLEVRISERAT 89 (98)
T ss_dssp EEEEEEEESSHHHHHHHHHHSTTCEETTE--ECEEECSSCSS
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCeeCCe--EEEEEEccCCC
Confidence 68999999 49999999999998 89998887643
No 279
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=86.58 E-value=0.28 Score=43.32 Aligned_cols=31 Identities=16% Similarity=0.226 Sum_probs=27.4
Q ss_pred cceEehhh-------hHHhhhcceeccC-CCCcEEEEeccC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSN-IDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~-~~~pi~~~~~~~ 34 (852)
||||||.| .|+..|||..+.+ + +|++.++.+
T Consensus 54 kG~afV~f~~~~~A~~Ai~~lng~~~~g~r--~l~V~~a~~ 92 (100)
T 3ns6_A 54 KGFLFVECGSMNDAKKIIKSFHGKRLDLKH--RLFLYTMKD 92 (100)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCBSSSSC--BCEEEESHH
T ss_pred ceEEEEEECCHHHHHHHHHHhCCcccCCCe--EEEEEECch
Confidence 79999999 4999999999998 7 888888754
No 280
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.52 E-value=0.37 Score=41.71 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=29.0
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.|. |+..|||..+.++ +|++.++.+..
T Consensus 48 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~v~~a~~~~ 87 (96)
T 1x5t_A 48 KGYAFINFASFDASDAAIEAMNGQYLCNR--PITVSYAFKKD 87 (96)
T ss_dssp CSEEEEEBSSHHHHHHHHHTTTTCEETTE--ECEEEESCCCC
T ss_pred CeEEEEEECCHHHHHHHHHHcCCCEECCE--EEEEEEecccC
Confidence 799999994 9999999999998 99999987743
No 281
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=86.41 E-value=0.37 Score=41.26 Aligned_cols=31 Identities=10% Similarity=0.151 Sum_probs=27.8
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
||||||.| .|+..|||..+.++ ++++.++..
T Consensus 40 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~--~l~V~~a~~ 77 (88)
T 1wg1_A 40 KRTAFVTLLNGEQAQNAIQMFHQYSFRGK--DLIVQLQPT 77 (88)
T ss_dssp GTEEEECCSCHHHHHHHHHHHTTEEETTE--EEEEEECCC
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCc--EEEEEEcCC
Confidence 79999999 49999999999999 899988755
No 282
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.28 E-value=0.31 Score=44.71 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=26.5
Q ss_pred cceEehhh-------hHHhhhcceec-----cCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYV-----SNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~l-----s~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+++|||..+ .+. ++.+.++...+
T Consensus 63 rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~--~l~v~~a~~~p 107 (114)
T 2cq2_A 63 KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI--TLYLNFVEKVQ 107 (114)
T ss_dssp CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE--ECEEEEESCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc--EEEEEecccCc
Confidence 79999999 39999999877 344 88888876643
No 283
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=86.25 E-value=0.77 Score=41.66 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=28.9
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
+|||||.| .|+..|+|..+.+. +|+|.++....
T Consensus 48 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~--~l~V~~a~~~~ 87 (116)
T 2fy1_A 48 RGFAFITFENPADAKNAAKDMNGKSLHGK--AIKVEQAKKPS 87 (116)
T ss_dssp CCEEEEECSSHHHHHHHHHHCSSCBCSSS--BCEEEECCCSS
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCEECCE--EEEEEECCCCC
Confidence 69999999 49999999999998 99999987643
No 284
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=86.21 E-value=0.27 Score=41.23 Aligned_cols=32 Identities=13% Similarity=0.188 Sum_probs=28.2
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.|. |+..|||..+.++ +|++.++.+.
T Consensus 43 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~--~l~v~~a~~~ 81 (83)
T 3md1_A 43 RGYGFVSFTSQDDAQNAMDSMQGQDLNGR--PLRINWAAKL 81 (83)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCEETTE--ECEEEECCCC
T ss_pred cceEEEEECCHHHHHHHHHHhcCCeeCCc--EEEEEecCcC
Confidence 799999994 9999999999998 9999887763
No 285
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=86.18 E-value=0.23 Score=42.14 Aligned_cols=32 Identities=6% Similarity=0.088 Sum_probs=27.1
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+..|||..+.++ +|++.++.+.
T Consensus 48 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~v~~a~~k 86 (87)
T 3bs9_A 48 KGYGFVSFFNKWDAENAIQQMGGQWLGGR--QIRTNWATRK 86 (87)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEEEC--
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCe--EEEEEecCCC
Confidence 68999999 49999999999998 8999887663
No 286
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.14 E-value=0.39 Score=42.08 Aligned_cols=34 Identities=18% Similarity=0.077 Sum_probs=29.5
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQPS 37 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~~ 37 (852)
||||||.|. |+..|||..+.++ +|++.++.....
T Consensus 54 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~v~~a~~~~~ 94 (102)
T 1x5s_A 54 RGFGFVTFENIDDAKDAMMAMNGKSVDGR--QIRVDQAGKSSD 94 (102)
T ss_dssp CSEEEEECSSHHHHHHHHHHHTTCCTTSC--CCEEEEEECCCC
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCEECCe--EEEEEECCCCCC
Confidence 789999994 9999999999998 999999877543
No 287
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=85.99 E-value=0.75 Score=41.96 Aligned_cols=43 Identities=19% Similarity=0.300 Sum_probs=36.9
Q ss_pred HHHHhhcCChHHHHHHHHHcCccccCChHHHHHHHHhhHHHhh
Q 003053 512 AIKELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLEDAEK 554 (852)
Q Consensus 512 ~~~~~~~~~~~~l~~~c~~~gl~~~~~~~~~~~rl~~~~~~~~ 554 (852)
....+.++-.+||+..|+..||...|.+.+|++||..|=+-..
T Consensus 33 ~~~~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~ 75 (114)
T 2rnn_A 33 TITLMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNAL 75 (114)
T ss_dssp HHHHHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhcc
Confidence 4456889999999999999999999999999999987744333
No 288
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=85.98 E-value=0.32 Score=42.69 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=28.3
Q ss_pred CcceEehhh-------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 1 MRSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 1 ~r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
+||||||.| .|+..|+|..+.++ ++++.++...
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~--~l~V~~a~~~ 95 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMNFGK--KLILEVSSSN 95 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEETTE--ECEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCE--EEEEEecCCC
Confidence 389999999 49999999999988 8888887653
No 289
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=85.75 E-value=0.26 Score=45.19 Aligned_cols=31 Identities=10% Similarity=-0.002 Sum_probs=27.5
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
||||||.| .|+..|||.++.++ +|.+.+...
T Consensus 55 ~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR--~i~v~~~~~ 92 (114)
T 3s6e_A 55 QGNVYVKCPSIAAAIAAVNALHGRWFAGK--MITAAYVPL 92 (114)
T ss_dssp TCCEEEECSSHHHHHHHHHHHTTCEETTE--ECEEEEECH
T ss_pred cEEEEEEECCHHHHHHHHHHhCCCEECCE--EEEEEEEcH
Confidence 79999999 49999999999999 898888643
No 290
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.69 E-value=0.48 Score=42.42 Aligned_cols=33 Identities=6% Similarity=-0.046 Sum_probs=28.8
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..|||..+.++ +|++.++....
T Consensus 65 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~--~l~V~~a~~~~ 104 (113)
T 2cpe_A 65 KGDATVSYEDPPTAKAAVEWFDGKDFQGS--KLKVSLARKKP 104 (113)
T ss_dssp CSEEEEEBSSHHHHHHHHHHHTTCEETTE--ECEEECSSCCC
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCccCCC--EEEEEECCCCC
Confidence 79999999 49999999999998 89998887743
No 291
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=85.67 E-value=0.49 Score=41.59 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=29.1
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..|||..+.++ +|++.++.+.+
T Consensus 55 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~a~~~~ 94 (103)
T 2cq3_A 55 KGFGFVTFENSADADRAREKLHGTVVEGR--KIEVNNATARV 94 (103)
T ss_dssp CCEEEEEESCHHHHHHHHHHHTTCEETTE--ECEEEECCSSC
T ss_pred cEEEEEEECCHHHHHHHHHHhCCCEECCE--EEEEEEcccCC
Confidence 79999999 49999999999998 99999987753
No 292
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=85.59 E-value=0.44 Score=41.94 Aligned_cols=32 Identities=6% Similarity=0.146 Sum_probs=27.9
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.|. |+ +|+|..+.++ +|+|.++.+.+
T Consensus 56 ~g~afV~f~~~~~a~~A~-~l~g~~~~g~--~l~V~~a~~~~ 94 (103)
T 2dng_A 56 KGFCYVEFDEVDSLKEAL-TYDGALLGDR--SLRVDIAEGRK 94 (103)
T ss_dssp EEEEEEEESSHHHHHHHG-GGTTCEETTE--ECEEEECCCCC
T ss_pred ceEEEEEECCHHHHHHHH-hhCCCeECCe--EEEEEEecCCC
Confidence 799999994 88 8999999998 99999987743
No 293
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.54 E-value=0.46 Score=41.76 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=28.7
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+..|||..+.++ +|.+.++...
T Consensus 55 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~V~~a~~~ 93 (103)
T 2dnm_A 55 RGFAFVRFHDRRDAQDAEAAMDGAELDGR--ELRVQVARYG 93 (103)
T ss_dssp CSCEEEEESSSSHHHHHHHHHSSCCBTTB--CCEEEECSSC
T ss_pred CeEEEEEECCHHHHHHHHHHcCCCEECCc--EEEEEECCcC
Confidence 79999999 49999999999998 9999998764
No 294
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=85.41 E-value=0.67 Score=42.32 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=28.7
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+..|+|..+.++ +|++.++...
T Consensus 76 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~--~l~V~~a~~~ 114 (124)
T 2kt5_A 76 LGTADVHFERRADALKAMKQYKGVPLDGR--PMDIQLVASQ 114 (124)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTEESSSC--EEEEEEECCT
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCEECCc--EEEEEEeCCC
Confidence 79999999 39999999999998 9999998774
No 295
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=85.37 E-value=0.29 Score=43.64 Aligned_cols=33 Identities=3% Similarity=0.034 Sum_probs=28.7
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..|||..+.+. +|++.++.+.+
T Consensus 68 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~--~l~V~~a~~~~ 107 (110)
T 1oo0_B 68 KGYALVEYETHKQALAAKEALNGAEIMGQ--TIQVDWCFVKG 107 (110)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEESEESS
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCc--EEEEEEcccCC
Confidence 79999999 49999999999998 99999887643
No 296
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=85.34 E-value=0.62 Score=41.10 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=29.1
Q ss_pred cceEehhh-------hHHhhh-cceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAW-HVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m-~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..| ||..+.+. +|++.++.+..
T Consensus 58 ~g~afV~f~~~~~a~~A~~~l~~~~~~~g~--~l~v~~a~~~~ 98 (107)
T 2cph_A 58 RGFGFVDFITKQDAKKAFNALCHSTHLYGR--RLVLEWADSEV 98 (107)
T ss_dssp CSEEEEEESSHHHHHHHHHHHHTCCBSSSC--BCEEEECCCCC
T ss_pred CceEEEEECCHHHHHHHHHHhccCCeECCC--EEEEEeCCCCC
Confidence 79999999 499999 99999998 99999987753
No 297
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=85.19 E-value=0.37 Score=40.82 Aligned_cols=32 Identities=6% Similarity=0.047 Sum_probs=28.1
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
+|||||.| .|+..|||..+.++ +|.+.++.+.
T Consensus 47 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~a~~~ 85 (88)
T 4a8x_A 47 KGYAYVEFENPDEAEKALKHMDGGQIDGQ--EITATAVLAP 85 (88)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEEECCC
T ss_pred CcEEEEEEecHHHHHHHHHHcCCCeECCe--EEEEEECCCC
Confidence 68999999 39999999999999 8999887653
No 298
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=85.09 E-value=0.54 Score=41.03 Aligned_cols=32 Identities=6% Similarity=0.069 Sum_probs=28.5
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.|. |++.|||..+.+. ++++.++.+.
T Consensus 51 kg~afV~f~~~~~a~~a~~~l~g~~~~g~--~l~v~~a~~~ 89 (99)
T 2cpj_A 51 KGFGFIRLETRTLAEIAKVELDNMPLRGK--QLRVRFACHS 89 (99)
T ss_dssp TTEEEEECSSSHHHHHHHHHHTTCCBTTB--CCEEEESSCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEeCCc--eEEEEEcCCC
Confidence 699999994 9999999999998 9999998774
No 299
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=85.07 E-value=0.82 Score=42.86 Aligned_cols=78 Identities=15% Similarity=0.077 Sum_probs=51.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEE-EEeccCC---------ccccC-CcccEEEEEECCHHHHHHHHHHhCCce
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASV-KIMWPRT---------EEERR-RQRNCGFVAFMNRADGQAAKDEMQGVV 133 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG~I~~v-ki~~pr~---------d~~tg-~~rg~gFV~F~~~~~A~~Ai~~lnG~~ 133 (852)
+-|.|-+.|+..+ ..+.+.|++||.|..- .+..+.. ..-.+ ...++-.|+|.+..+|.+|+. .||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 4566667776655 4566789999998662 1110000 00001 135788999999999999997 69999
Q ss_pred ecCeEEEEeec
Q 003053 134 VYEYELKIGWG 144 (852)
Q Consensus 134 l~G~~l~V~~a 144 (852)
|+|.-|-|.+-
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99986666543
No 300
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=85.03 E-value=0.34 Score=42.20 Aligned_cols=31 Identities=13% Similarity=-0.075 Sum_probs=27.6
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
||||||.| .|+..|||..+.++ +|++.++..
T Consensus 57 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~--~l~V~~a~~ 94 (98)
T 2cqp_A 57 TGEAMVAFESRDEATAAVIDLNDRPIGSR--KVKLVLGSG 94 (98)
T ss_dssp EEEEEEEESCHHHHHHHHHHTTTCEETTE--ECEEEESSC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCeeCCe--EEEEEEcCC
Confidence 69999999 49999999999998 899988765
No 301
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=84.99 E-value=0.76 Score=40.82 Aligned_cols=32 Identities=13% Similarity=0.112 Sum_probs=28.6
Q ss_pred cceEehhh-------hHHhhhc------ceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWH------VIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~------g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+..|| |..+.++ +|++.++.+.
T Consensus 57 ~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~--~l~v~~a~~~ 101 (111)
T 1x4h_A 57 KGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR--QLKVDLAVTR 101 (111)
T ss_dssp CSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC--EEEEECCCCC
T ss_pred ccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE--EEEEEECCCC
Confidence 79999999 4999999 9999999 9999998774
No 302
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.98 E-value=0.7 Score=40.95 Aligned_cols=33 Identities=12% Similarity=0.012 Sum_probs=27.9
Q ss_pred cceEehhhh-------HHhhhc--ceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLFS-------FFNAWH--VIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~--g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.|. |+..|+ +..+.++ +|++.++.+..
T Consensus 52 ~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~--~l~V~~a~~~~ 93 (109)
T 2dis_A 52 RGFAFVEYESHRAAAMARRKLMPGRIQLWGH--QIAVDWAEPEI 93 (109)
T ss_dssp CCEEEEEESSHHHHHHHHTTTTTCCSCBTTB--CCEEEESCSSC
T ss_pred CcEEEEEecCHHHHHHHHHHhhCCCceecCC--eEEEEEcCCCC
Confidence 799999994 999996 5889888 99999987643
No 303
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=84.95 E-value=0.46 Score=41.32 Aligned_cols=32 Identities=6% Similarity=0.036 Sum_probs=28.1
Q ss_pred cceEehhh-------hHHhhhcceecc--CCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVS--NIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls--~~~~pi~~~~~~~~ 35 (852)
||||||.| .|++.|||..+. ++ ++++.++.+.
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~--~l~V~~a~~~ 93 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDR--RLRVDFAKSG 93 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSC--BCEEEECCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCCc--EEEEEECCCC
Confidence 68999999 499999999998 67 9999998774
No 304
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.93 E-value=0.65 Score=40.48 Aligned_cols=32 Identities=22% Similarity=0.179 Sum_probs=27.7
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.|. |++ |++..+.++ +|++.++.+..
T Consensus 52 ~g~afV~f~~~~~a~~A~~-~~~~~~~g~--~l~V~~a~~~~ 90 (99)
T 2dgs_A 52 RGFGFITFEDEQSVDQAVN-MHFHDIMGK--KVEVKRAEPRD 90 (99)
T ss_dssp CSEEEEEESSHHHHHHHHH-HCCCBSSSC--BCEEEECCCCC
T ss_pred CceEEEEECCHHHHHHHHH-hCCCEECCe--EEEEEECCCCc
Confidence 799999994 887 999999998 99999987643
No 305
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.83 E-value=0.44 Score=41.91 Aligned_cols=33 Identities=9% Similarity=0.044 Sum_probs=28.8
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..|||..+.+. +|++.++.+..
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~v~~a~~~~ 96 (103)
T 2cq0_A 57 KGFAFISFHRREDAARAIAGVSGFGYDHL--ILNVEWAKPST 96 (103)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTCEETTE--ECEEEESSCCC
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCeeCCc--EEEEEECCCCC
Confidence 68999999 49999999999998 99999887743
No 306
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=84.77 E-value=0.34 Score=41.98 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=28.4
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.|. |+..|||..+.+. ++++.++.+.
T Consensus 51 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~v~~a~~~ 89 (97)
T 1nu4_A 51 RGQAFVIFKEVSSATNALRSMQGFPFYDK--PMRIQYAKTD 89 (97)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEECSSC
T ss_pred CcEEEEEeCCHHHHHHHHHHhCCCEECCc--EEEEEEccCC
Confidence 799999994 9999999999988 9999988764
No 307
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=84.58 E-value=0.48 Score=43.57 Aligned_cols=32 Identities=13% Similarity=0.140 Sum_probs=28.7
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+..|+|..+.+. +|++.++...
T Consensus 73 kg~aFV~f~~~~~A~~Ai~~lng~~~~g~--~l~V~~a~~~ 111 (121)
T 2bz2_A 73 RNCAFVTYEKMESADQAVAELNGTQVESV--QLKVNIARKQ 111 (121)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCBCSSC--BCEEEECCSS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCe--EEEEEEeCCC
Confidence 79999999 49999999999998 9999998764
No 308
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.58 E-value=0.4 Score=42.23 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=27.9
Q ss_pred cceEehhh-------hHHhhhccee-ccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIY-VSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~-ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+..|||.. +.++ +|++.++.+.
T Consensus 51 ~g~afV~f~~~~~a~~A~~~l~g~~~~~g~--~l~v~~a~~~ 90 (104)
T 2dhg_A 51 KGYGFVKFTDELEQKRALTECQGAVGLGSK--PVRLSVAIPK 90 (104)
T ss_dssp EEEEEEEESCHHHHHHHHHHTTTCCSSSSS--CCCCCBCCCC
T ss_pred cceEEEEECCHHHHHHHHHHccCCcccCCE--eEEEEEccCC
Confidence 79999999 4999999999 9998 8888887664
No 309
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=84.54 E-value=0.5 Score=42.49 Aligned_cols=32 Identities=9% Similarity=0.161 Sum_probs=28.3
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+..|||..+.++ +|+|.++.+.
T Consensus 67 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~V~~a~~~ 105 (115)
T 2cpz_A 67 KCFGFVSYDNPVSAQAAIQSMNGFQIGMK--RLKVQLKRSK 105 (115)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTCEETTE--ECEEECCCCS
T ss_pred CccEEEEECCHHHHHHHHHHcCCCEECCE--EEEEEEcCCC
Confidence 68999999 49999999999998 9999988764
No 310
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.50 E-value=0.46 Score=40.70 Aligned_cols=33 Identities=9% Similarity=0.066 Sum_probs=29.0
Q ss_pred CcceEehhhh-------HHhhhcceeccCCCCcEEEEeccCC
Q 003053 1 MRSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 1 ~r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
+|+||||.|. |+..|||..+.++ +|++.++.+.
T Consensus 42 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~a~~~ 81 (90)
T 2dnp_A 42 VKDYAFVHMEKEADAKAAIAQLNGKEVKGK--RINVELSTKG 81 (90)
T ss_dssp CSSCEEEEESCHHHHHHHHHHHTTCEETTE--ECEEEESCCC
T ss_pred ECCEEEEEECCHHHHHHHHHHhCCCEECCc--EEEEEECCCC
Confidence 5789999994 9999999999998 9999988764
No 311
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=84.29 E-value=0.41 Score=41.62 Aligned_cols=33 Identities=9% Similarity=0.016 Sum_probs=29.0
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..|+|..+.++ ++++.++.+.+
T Consensus 44 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~--~l~V~~a~~~~ 83 (96)
T 2x1f_A 44 KGYAFIEFRDLESSASAVRNLNGYQLGSR--FLKCGYSSNSD 83 (96)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEECSCSS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeECCe--EEEEEEcCCCC
Confidence 79999999 49999999999998 99999987753
No 312
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=84.11 E-value=0.37 Score=42.55 Aligned_cols=32 Identities=3% Similarity=0.137 Sum_probs=28.3
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+..|||..+.+. +|++.++.+.
T Consensus 65 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~V~~a~~~ 103 (106)
T 1p27_B 65 KGYTLVEYETYKEAQAAMEGLNGQDLMGQ--PISVDWCFVR 103 (106)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCBSSSS--BCEEEESEES
T ss_pred eeEEEEEECCHHHHHHHHHHhcCCEECCc--EEEEEeecCC
Confidence 69999999 49999999999998 9999887664
No 313
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=83.91 E-value=1 Score=41.80 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=29.2
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..|||..+.++ +|++.++....
T Consensus 84 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~a~~~~ 123 (139)
T 1u6f_A 84 RGYGFVKFQSGSSAQQAIAGLNGFNILNK--RLKVALAASGH 123 (139)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTEECSSC--EEEEEESSCCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCe--EEEEEECCCCC
Confidence 79999999 49999999999999 99999987753
No 314
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.86 E-value=0.46 Score=41.72 Aligned_cols=33 Identities=9% Similarity=0.006 Sum_probs=28.9
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..|||..+.++ ++++.++.+..
T Consensus 50 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~a~~~~ 89 (104)
T 1p1t_A 50 KGYGFCEYQDQETALSAMRNLNGREFSGR--ALRVDNAASEK 89 (104)
T ss_dssp EEEEEEECSCHHHHHHHHHHSSSBSCSSS--CBEEEETTCTT
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeeCCc--EEEEEeCCCcc
Confidence 79999999 49999999999998 99999987643
No 315
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=83.73 E-value=0.59 Score=41.16 Aligned_cols=33 Identities=12% Similarity=0.099 Sum_probs=28.3
Q ss_pred cceEehhh-------hHHhhhcceeccC---CCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSN---IDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~---~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..|||..+.+ . +|++.++...+
T Consensus 56 ~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~--~l~V~~a~~~~ 98 (105)
T 2dnh_A 56 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASS--SLVVKFADTDK 98 (105)
T ss_dssp EEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS--CCEEEESCSSC
T ss_pred CcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc--cEEEEECccCc
Confidence 79999999 4999999998877 6 89999987753
No 316
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.71 E-value=0.44 Score=41.01 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=27.2
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
||||||.| .|+..|||..+.++ +|++.++.+
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~v~~a~~ 94 (95)
T 2cqc_A 57 RGFAFVYFENVDDAKEAKERANGMELDGR--RIRVSGPSS 94 (95)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTEEETTE--EEEEECCSC
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCEECCE--EEEEEecCC
Confidence 68999999 49999999999998 899888654
No 317
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=83.59 E-value=0.39 Score=41.85 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=28.5
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+..|||..+.++ ++++.++.+.
T Consensus 45 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~V~~a~~~ 83 (96)
T 2kvi_A 45 NAFGFIQFDNPQSVRDAIECESQEMNFGK--KLILEVSSSN 83 (96)
T ss_dssp TTEEEEEESCHHHHHHHHHHHTCSSCBTT--TBCEEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCeeCCc--EEEEEEcCcC
Confidence 79999999 49999999999988 9999988764
No 318
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=83.42 E-value=0.38 Score=43.20 Aligned_cols=30 Identities=13% Similarity=-0.109 Sum_probs=26.6
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEecc
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNL 33 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~ 33 (852)
+|||||.| .|+..|||.++.++ +|.+.+..
T Consensus 59 ~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR--~i~v~~~~ 95 (105)
T 3v4m_A 59 CGKIFVEFTSVFDCQKAMQGLTGRKFANR--VVVTKYCD 95 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEEEC
T ss_pred cEEEEEEECCHHHHHHHHHHhCCCEeCCC--EEEEEEeC
Confidence 79999999 49999999999999 88887754
No 319
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=83.34 E-value=0.59 Score=41.72 Aligned_cols=32 Identities=3% Similarity=-0.014 Sum_probs=28.2
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+..|||..+.+. +|++.++...
T Consensus 62 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~V~~a~~~ 100 (110)
T 1wf1_A 62 KGYAFVQYSNERHARAAVLGENGRVLAGQ--TLDINMAGEP 100 (110)
T ss_dssp TTEEEEECSSSHHHHHHHHHHTTCEETTE--ECCEEESCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCe--EEEEEECCCC
Confidence 79999999 49999999999998 8999887754
No 320
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=83.29 E-value=0.83 Score=42.26 Aligned_cols=32 Identities=9% Similarity=0.224 Sum_probs=28.3
Q ss_pred cceEehhh------hHHhhhcce----eccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF------SFFNAWHVI----YVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f------~A~~~m~g~----~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+..|||. .+.++ +|+|.++.+.
T Consensus 67 rG~aFV~f~~~~a~~Ai~~l~g~~~~~~~~gr--~l~V~~a~~~ 108 (131)
T 2m2b_A 67 RGFAFIQLSTIEAAQLLQILQALHPPLTIDGK--TINVEFAKGS 108 (131)
T ss_dssp CSCEEEECCHHHHHHHHHHHTTCCCSCCGGGC--CCCCEECCCS
T ss_pred ceEEEEEECCHHHHHHHHHhcCCCCCccCCCE--EEEEEECCCC
Confidence 79999999 499999999 99998 8988888764
No 321
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=83.19 E-value=0.57 Score=41.68 Aligned_cols=32 Identities=9% Similarity=-0.021 Sum_probs=28.4
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|++.||+..+.++ +|+|.++...
T Consensus 61 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~V~~a~~~ 99 (109)
T 1x4a_A 61 PPFAFVEFEDPRDAEDAVYGRDGYDYDGY--RLRVEFPRSG 99 (109)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCEETTE--ECEEECCCCC
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCEECCe--EEEEEEcccC
Confidence 79999999 49999999999998 8999988764
No 322
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=83.01 E-value=0.78 Score=40.42 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=27.5
Q ss_pred cceEehhh-------hHHhhhcceec---cCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYV---SNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~l---s~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..|||..+ .+. +|++.++....
T Consensus 55 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~--~l~v~~a~~~~ 97 (106)
T 2dgp_A 55 KGCAFLTYCERESALKAQSALHEQKTLPGMNR--PIQVKPADSES 97 (106)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS--CCEEEECCCCS
T ss_pred ceEEEEEECCHHHHHHHHHHhcCCcccCCCCc--eEEEEECCccc
Confidence 79999999 49999999876 667 89999887643
No 323
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=82.93 E-value=0.44 Score=42.77 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=28.3
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+..|+|..+.+. ++.+.++...
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~--~l~V~~a~~~ 103 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFANQ--PLEVVYSKLP 103 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTE--ECEEESCSCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCe--EEEEEEecCC
Confidence 79999999 49999999999998 8999887764
No 324
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=82.90 E-value=0.47 Score=42.77 Aligned_cols=32 Identities=13% Similarity=0.151 Sum_probs=28.4
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+..|||..+.++ +|+|.++...
T Consensus 46 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~--~l~V~~a~~~ 84 (111)
T 1whx_A 46 GITAIVEFLEPLEARKAFRHLAYSKFHHV--PLYLEWAPIG 84 (111)
T ss_dssp SSCEEEEESCHHHHHHHHHHHTTCBSSSS--BCEEEEEETT
T ss_pred CCEEEEEeCCHHHHHHHHHHhCCCEECCe--EEEEEECCCC
Confidence 79999999 49999999999999 9999987653
No 325
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.75 E-value=0.49 Score=41.22 Aligned_cols=32 Identities=9% Similarity=0.128 Sum_probs=27.1
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCc----EEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGP----VFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~p----i~~~~~~~~ 35 (852)
||||||.| .|+..|||..+.+. . |++.++...
T Consensus 52 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~~~~~l~v~~a~~~ 94 (99)
T 2div_A 52 AGYCFVEFADLATAEKCLHKINGKPLPGA--TPAKRFKLNYATYS 94 (99)
T ss_dssp EEEEEEECSCHHHHHHHHHTTTTSEESSC--SSCEECCEEETTCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHcCCccCCC--CcceeEEEeecCCC
Confidence 59999999 49999999999998 5 788777653
No 326
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=82.67 E-value=0.45 Score=40.04 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=25.6
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEec
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLN 32 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~ 32 (852)
||||||.|. |+..|||..+.++ +|++.++
T Consensus 49 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~a 84 (85)
T 3mdf_A 49 RGFAFVEFELAEDAAAAIDNMNESELFGR--TIRVNLA 84 (85)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEEC
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCEECCc--EEEEEEc
Confidence 799999994 9999999999998 8888765
No 327
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=82.61 E-value=0.4 Score=41.36 Aligned_cols=31 Identities=10% Similarity=-0.161 Sum_probs=26.5
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
||||||.| .|+..|||..+.++ +|++.++.+
T Consensus 57 ~g~afV~f~~~~~a~~Ai~~l~g~~~~gr--~l~v~~a~s 94 (95)
T 2ek1_A 57 TGEAMVAFESRDEATAAVIDLNDRPIGSR--KVKLSGPSS 94 (95)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEECCC-
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCeECCc--EEEEEeccC
Confidence 69999999 49999999999998 888887654
No 328
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=82.25 E-value=0.48 Score=40.58 Aligned_cols=32 Identities=6% Similarity=0.019 Sum_probs=27.9
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.|. |+..|||..+.++ +|++.++.+.
T Consensus 48 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~--~l~v~~a~~~ 86 (92)
T 2dgv_A 48 KGCGVVKFESPEVAERACRMMNGMKLSGR--EIDVRIDRNA 86 (92)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCBTTB--CCCCEECSCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCc--EEEEEEcCCC
Confidence 699999993 9999999999998 8888887664
No 329
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=82.22 E-value=0.69 Score=40.74 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=27.9
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+ .|||..+.++ +|++.++.+..
T Consensus 57 ~g~afV~f~~~~~a~~A~-~l~g~~~~g~--~l~V~~a~~~~ 95 (104)
T 1wi8_A 57 KGFGYAEFEDLDSLLSAL-SLNEESLGNK--RIRVDVADQAQ 95 (104)
T ss_dssp CSCEEEEESSHHHHHHHH-GGGTCEETTE--ECEEEECCCCC
T ss_pred CeEEEEEECCHHHHHHHH-hcCCCEeCCc--EEEEEEccCCC
Confidence 79999999 488 9999999998 89999887743
No 330
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=82.00 E-value=0.57 Score=42.78 Aligned_cols=34 Identities=3% Similarity=0.117 Sum_probs=29.6
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQPS 37 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~~ 37 (852)
+|||||.| .|+..|||..+.+. +|.|.++.+...
T Consensus 64 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~a~~~~~ 104 (126)
T 3ex7_B 64 KGYTLVEYETYKEAQAAMEGLNGQDLMGQ--PISVDWCFVRGP 104 (126)
T ss_dssp CSCEEEEESSHHHHHHHHHHHTTCBSSSS--BCEEEESEESSS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeeCCe--EEEEEEecCCCC
Confidence 79999999 49999999999998 999999876543
No 331
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=81.68 E-value=0.78 Score=40.70 Aligned_cols=32 Identities=6% Similarity=-0.026 Sum_probs=26.7
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
||||||.| .|+..|||..+.++ ++|++.++..
T Consensus 61 ~G~afV~f~~~~~A~~Ai~~l~g~~~~g~-~~l~V~~a~~ 99 (105)
T 2nlw_A 61 KGYIFLEYASPAHAVDAVKNADGYKLDKQ-HTFRVNLFTD 99 (105)
T ss_dssp CCEEEEEECSSSHHHHHHHHCSSEECSTT-CEEEEECSCC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCcccCCC-ceEEEEEcch
Confidence 79999999 49999999999874 3788887654
No 332
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.54 E-value=1.3 Score=39.81 Aligned_cols=31 Identities=10% Similarity=0.108 Sum_probs=26.7
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+..|++ .+.++ +|+|.++...
T Consensus 59 ~g~afV~f~~~~~a~~Ai~~~~~-~~~g~--~l~V~~a~~~ 96 (116)
T 2cqd_A 59 RGYGFVTMADRAAAERACKDPNP-IIDGR--KANVNLAYLG 96 (116)
T ss_dssp CSEEEEEESSHHHHHHHHTCSSC-EETTE--ECEEEESTTT
T ss_pred ceEEEEEECCHHHHHHHHHhCCC-cCCCE--EEEEEEcccC
Confidence 68999999 49999999 78888 8999998764
No 333
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=80.87 E-value=0.49 Score=45.60 Aligned_cols=31 Identities=3% Similarity=-0.054 Sum_probs=27.6
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
||||||.| .|+..|+|..+.++ +|+|.++..
T Consensus 99 kGfaFV~f~~~~~A~~Ai~~lng~~~~Gr--~l~V~~a~~ 136 (156)
T 3n9u_C 99 KGYAEVVVASENSVHKLLELLPGKVLNGE--KVDVRPATR 136 (156)
T ss_dssp EEEEEEEESCHHHHHHHHHHSTTCEETTE--ECEEEECCH
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCe--EeEEEEcCC
Confidence 79999999 49999999999999 888888754
No 334
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=80.84 E-value=0.5 Score=43.49 Aligned_cols=31 Identities=13% Similarity=-0.062 Sum_probs=26.9
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
|||+||.| .|+..|||.++.++ +|.+.+...
T Consensus 71 ~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR--~i~v~~~~~ 108 (118)
T 3ue2_A 71 IVKIFVEFSIASETHKAIQALNGRWFAGR--KVVAEVYDQ 108 (118)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEEECH
T ss_pred eEEEEEEECCHHHHHHHHHHHCCCEECCc--EEEEEEcCh
Confidence 69999999 49999999999999 888877543
No 335
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=80.71 E-value=0.54 Score=40.53 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=26.9
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
||||||.| .|+..|||..+.++ +|++.++.+
T Consensus 57 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~V~~a~~ 94 (95)
T 2ywk_A 57 KSFGFVCFKHPESVSYAIALLNGIRLYGR--PINVSGPSS 94 (95)
T ss_dssp EEEEEEEESSTHHHHHHHHHHTTCEETTE--ECEEECCCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCC--EEEEEEcCC
Confidence 69999999 49999999999998 888887654
No 336
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.29 E-value=0.6 Score=42.72 Aligned_cols=30 Identities=17% Similarity=0.066 Sum_probs=26.6
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
||||||.|. |+. |||..+.++ +|.|.++..
T Consensus 67 ~G~afV~F~~~~~a~~Al~-~~g~~~~gr--~i~V~~a~~ 103 (124)
T 1wel_A 67 TGEGFVEFRNEADYKAALC-RHKQYMGNR--FIQVHPITK 103 (124)
T ss_dssp EEEEEEEBSSSHHHHHHHT-SCSBCSTTS--CBEEEEECH
T ss_pred CeEEEEEECCHHHHHHHHH-hCCCeECCc--EEEEEECCH
Confidence 799999994 888 999999999 999988765
No 337
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=80.18 E-value=0.52 Score=41.42 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=26.1
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
||||||.| .|+ .|+|..+.++ .|++.++.+
T Consensus 61 ~g~afV~f~~~~~a~~Ai-~l~g~~~~g~--~l~V~~a~~ 97 (100)
T 2j76_E 61 KGFGYAEFEDLDSLLSAL-SLNEESLGNR--RIRVDVADQ 97 (100)
T ss_dssp CSCEEEEECCHHHHHHHH-HTTTCCBTTB--CCCCEECCC
T ss_pred CeEEEEEECCHHHHHHHH-hcCCCEECCe--EEEEEeccC
Confidence 79999999 488 9999999998 888887765
No 338
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=79.90 E-value=0.93 Score=40.36 Aligned_cols=33 Identities=3% Similarity=-0.130 Sum_probs=28.5
Q ss_pred ceEehhh-------hHHhhhcceeccC-----CCCcEEEEeccCCCC
Q 003053 3 SFSFFLF-------SFFNAWHVIYVSN-----IDGPVFLWLNLFQPS 37 (852)
Q Consensus 3 ~f~F~~f-------~A~~~m~g~~ls~-----~~~pi~~~~~~~~~~ 37 (852)
|||||.| .|+..|||..+.+ . +|++.++.+.+.
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~--~i~V~~a~~~~~ 95 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA--YIRVKVDGPRSP 95 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE--EEEEEESSCCSC
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce--EEEEEeCCCCCC
Confidence 8999999 4999999999998 6 899999887543
No 339
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=78.97 E-value=0.56 Score=40.06 Aligned_cols=32 Identities=6% Similarity=-0.046 Sum_probs=26.4
Q ss_pred cceEehhh------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+..|||..+.++ ++++.++...
T Consensus 43 ~g~afV~f~~~~a~~a~~~l~g~~~~g~--~l~V~~a~~~ 80 (90)
T 2ki2_A 43 KGFGFVEMQEESVSEAIAKLDNTDFMGR--TIRVTEANPK 80 (90)
T ss_dssp CEEEEEEECTTHHHHHHHTSCSSCCSSS--SCSEEEC---
T ss_pred ceEEEEEECCHHHHHHHHHhCCCEECCe--EEEEEEcCCC
Confidence 79999999 49999999999999 9999887764
No 340
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=78.86 E-value=0.84 Score=38.68 Aligned_cols=30 Identities=10% Similarity=0.138 Sum_probs=26.4
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
||||||.| +|+ .|||..+.++ +|++.++.+
T Consensus 48 ~g~afV~f~~~~~a~~a~-~~~g~~~~g~--~l~V~~a~~ 84 (89)
T 3ucg_A 48 KGFAYIEFSDKESVRTSL-ALDESLFRGR--QIKVIPKRT 84 (89)
T ss_dssp CEEEEEEESSTHHHHHHG-GGTTCEETTE--ECEEEETTT
T ss_pred ceEEEEEECCHHHHHHHH-hcCCCEECCc--EEEEEEccC
Confidence 79999999 388 9999999998 888888765
No 341
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=78.40 E-value=1.2 Score=40.63 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=26.7
Q ss_pred cceEehhh-------hHHhhhcc--eeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHV--IYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g--~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|++.|++ ..+.++ +|+|.++....
T Consensus 62 kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr--~l~V~~a~~~~ 103 (112)
T 1x4f_A 62 KSQAFIEMETREDAMAMVDHCLKKALWFQGR--CVKVDLSEKYK 103 (112)
T ss_dssp TTEEEEECSSHHHHHHHHHHHHHSCCCSSSS--CCEEEEECSCS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCE--EEEEEECcccc
Confidence 79999999 38888864 568888 99999987643
No 342
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=79.56 E-value=0.44 Score=43.02 Aligned_cols=32 Identities=9% Similarity=0.016 Sum_probs=28.4
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.|. |+..|+|..+.++ +|+|.++.+.
T Consensus 57 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~--~l~V~~a~~~ 95 (116)
T 2lcw_A 57 KGEATVSFDDPPSAKAAIDWFDGKEFSGN--PIKVSFATRR 95 (116)
Confidence 799999994 9999999999998 8999887764
No 343
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=77.70 E-value=0.78 Score=41.04 Aligned_cols=31 Identities=13% Similarity=0.087 Sum_probs=26.3
Q ss_pred cceEehhh-------hHHhhhccee--ccCCCCcEEEEeccC
Q 003053 2 RSFSFFLF-------SFFNAWHVIY--VSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~--ls~~~~pi~~~~~~~ 34 (852)
||||||.| .|++.|+|.. +.++ +|++.++..
T Consensus 57 kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr--~i~V~~S~~ 96 (100)
T 3r27_A 57 KRQALVEFEDVLGACNAVNYAADNQIYIAGH--PAFVNYSTS 96 (100)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCEEETTE--EEEEEECSC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCCceeCCc--EEEEEeccc
Confidence 89999999 3999999864 6788 999999765
No 344
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=77.58 E-value=0.89 Score=43.24 Aligned_cols=33 Identities=6% Similarity=-0.083 Sum_probs=29.1
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..||+..+.+. +|+|.++.+.+
T Consensus 81 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~--~l~V~~a~~~~ 120 (156)
T 1h2v_Z 81 CGFCFVEYYSRADAENAMRYINGTRLDDR--IIRTDWDAGFK 120 (156)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTSEETTE--ECEEEEESCCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCe--EEEEEECCCCC
Confidence 68999999 49999999999998 99999987743
No 345
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.41 E-value=1.2 Score=39.57 Aligned_cols=33 Identities=12% Similarity=0.329 Sum_probs=26.7
Q ss_pred cceEehhh-------hHHhhhc--ceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWH--VIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~--g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..|+ +..+.++ +|+|.++....
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr--~l~V~~a~~~~ 92 (101)
T 2cq1_A 51 KNQAFLELATEEAAITMVNYYSAVTPHLRNQ--PIYIQYSNHKE 92 (101)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCEETTE--ECEEEECSCSS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCc--EEEEEEcCccc
Confidence 79999999 3888764 6778888 99999987643
No 346
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.32 E-value=0.38 Score=43.22 Aligned_cols=31 Identities=6% Similarity=0.165 Sum_probs=27.1
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+ .|||..+.+. +|+|.++...
T Consensus 67 ~g~afV~f~~~~~a~~A~-~l~g~~~~g~--~l~V~~a~~~ 104 (114)
T 2cq4_A 67 KGIAYVEFCEIQSVPLAI-GLTGQRLLGV--PIIVQASQAE 104 (114)
T ss_dssp CCCEEEEESCGGGHHHHH-HHTTEEETTE--EEEEEEHHHH
T ss_pred CcEEEEEeCcHHHHHHHH-HcCCCEeCCe--EEEEEecCCC
Confidence 79999999 489 9999999998 9999887653
No 347
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=77.27 E-value=0.85 Score=41.51 Aligned_cols=30 Identities=3% Similarity=-0.101 Sum_probs=26.2
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
||||||.|. |+. ||+..+.++ +|.|.++..
T Consensus 61 ~G~afV~F~~~~~a~~Al~-~~g~~~~gr--~i~V~~a~~ 97 (118)
T 2db1_A 61 SGEAFVELESEDDVKLALK-KDRESMGHR--YIEVFKSHR 97 (118)
T ss_dssp EEEEEEEBSSHHHHHHHGG-GTTEEETTE--EEEEEEECH
T ss_pred CeEEEEEECCHHHHHHHHh-cCCCeECCe--EEEEEECCH
Confidence 799999994 888 999999999 999988754
No 348
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=76.98 E-value=1.1 Score=39.98 Aligned_cols=33 Identities=9% Similarity=0.143 Sum_probs=26.5
Q ss_pred cceEehhh-------hHHhhhcce--eccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLF-------SFFNAWHVI--YVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~--~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.| .|+..|++. .+.++ +|++.++....
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr--~l~V~~a~~~~ 92 (104)
T 1wex_A 51 KRQALVEFENIDSAKECVTFAADVPVYIAGQ--QAFFNYSTSKR 92 (104)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCBSSSS--BCEEEECSSSS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCE--EEEEEEccCcc
Confidence 79999999 388888764 58888 99999987643
No 349
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.71 E-value=1.4 Score=40.61 Aligned_cols=32 Identities=9% Similarity=0.315 Sum_probs=26.8
Q ss_pred cceEehhh-------hHHhhhcc--eeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHV--IYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g--~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+..|++ ..+.++ +|+|.++...
T Consensus 67 kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr--~l~V~~a~~k 107 (119)
T 2ad9_A 67 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ--PIYIQFSNHK 107 (119)
T ss_dssp GTEEEEECSCHHHHHHHHHHHHHHCCCBTTB--CCEEEECSSS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCe--EEEEEEccCC
Confidence 79999999 38888874 678888 9999998764
No 350
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=76.46 E-value=0.95 Score=37.10 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=23.0
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEec
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLN 32 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~ 32 (852)
||||||.|. |++ |+|..+.++ ++.+.++
T Consensus 41 ~g~afV~f~~~~~a~~a~~-~~~~~~~g~--~l~v~~A 75 (75)
T 2mss_A 41 RGFGFVTFESEDIVEKVCE-IHFHEINNK--MVECKKA 75 (75)
T ss_dssp CBEEEEECSCHHHHHHHHS-SSCCCSSSC--CCEEECC
T ss_pred CcEEEEEECCHHHHHHHHH-CCCCEECCE--EEEEEeC
Confidence 799999994 776 999999988 7777653
No 351
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=76.43 E-value=1.2 Score=39.45 Aligned_cols=31 Identities=19% Similarity=0.012 Sum_probs=26.3
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.|. |+ +||+..+.++ .|.+..+...
T Consensus 55 ~G~afV~F~~~~~a~~Al-~~~~~~~~gr--~i~V~~~~~~ 92 (102)
T 1wez_A 55 TGEADVEFATHEDAVAAM-AKDKANMQHR--YVELFLNSTA 92 (102)
T ss_dssp EEEEEEECSSSHHHHHHH-TTSSCCSSSS--CCEEEEECCC
T ss_pred eeEEEEEECCHHHHHHHH-HhCCCeECCc--EEEEEECCCC
Confidence 799999994 88 5899999999 8888887664
No 352
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.71 E-value=1.2 Score=40.12 Aligned_cols=30 Identities=7% Similarity=-0.111 Sum_probs=25.6
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
||||||.| .|+ +||+..+.++ .|.+..+..
T Consensus 56 ~G~afV~F~~~~~a~~Al-~~~~~~~~gr--~i~V~~a~~ 92 (109)
T 2dnn_A 56 NGNGLVKFLSPQDTFEAL-KRNRMLMIQR--YVEVSPATE 92 (109)
T ss_dssp CSEEEEECSSHHHHHHHH-HTTTEEETTE--EEEEEECCH
T ss_pred CeEEEEEECCHHHHHHHH-hcCCCeECCe--EEEEEECCc
Confidence 79999999 488 7999999999 888877654
No 353
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=75.68 E-value=0.8 Score=40.75 Aligned_cols=30 Identities=13% Similarity=0.068 Sum_probs=25.7
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
||||||.| .|+. ||+..+.++ +|++..+..
T Consensus 55 ~G~afV~F~~~~~a~~Al~-~~~~~~~gr--~i~V~~a~~ 91 (107)
T 2lmi_A 55 RGDALIEMESEQDVQKALE-KHRMYMGQR--YVEVYEINN 91 (107)
T ss_dssp CSEEEEEBSSHHHHHHHHT-TTTCCSSSS--CCCCEECCH
T ss_pred eeEEEEEECCHHHHHHHHH-hCcceeCCe--EEEEEECCH
Confidence 79999999 3888 999999998 888877654
No 354
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.20 E-value=0.82 Score=38.44 Aligned_cols=29 Identities=10% Similarity=0.103 Sum_probs=24.6
Q ss_pred cceEehhhh-------HHhhh-cceeccCCCCcEEEEec
Q 003053 2 RSFSFFLFS-------FFNAW-HVIYVSNIDGPVFLWLN 32 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m-~g~~ls~~~~pi~~~~~ 32 (852)
||||||.|. |+..| +|..+.+. ++++.++
T Consensus 48 kg~afV~f~~~~~A~~a~~~l~~~~~~~g~--~l~v~~a 84 (85)
T 2ytc_A 48 QQCAFIQFATRQAAEVAAEKSFNKLIVNGR--RLNVKWG 84 (85)
T ss_dssp GTEEEEEESSHHHHHHHHHTTTTTCEETTE--ECCEEEC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCeeECCC--EEEEEec
Confidence 699999994 88888 99999988 7777764
No 355
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.76 E-value=0.99 Score=40.72 Aligned_cols=32 Identities=9% Similarity=0.325 Sum_probs=26.1
Q ss_pred cceEehhh-------hHHhhhc--ceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWH--VIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~--g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|+..|+ +..+.++ +|+|.++...
T Consensus 52 kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr--~l~V~~A~~~ 92 (105)
T 1sjq_A 52 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ--PIYIQFSNHK 92 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSCCEETTE--ECCBCCCSSS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCE--EEEEEEcCCC
Confidence 79999999 3888776 4788888 8998887664
No 356
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=74.47 E-value=0.97 Score=46.36 Aligned_cols=31 Identities=3% Similarity=-0.104 Sum_probs=27.7
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
||||||.| .|+..|||..|.++ .|+|.++..
T Consensus 112 kGfaFV~f~~~~~a~~Ai~~lng~~~~Gr--~l~V~~a~~ 149 (229)
T 3q2s_C 112 KGFALVGVGSEASSKKLMDLLPKRELHGQ--NPVVTPVNK 149 (229)
T ss_dssp EEEEEEEESCTTHHHHHHTTSTTSCBTTB--CCEEEECCH
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCeECCE--EeEEEECCC
Confidence 79999999 49999999999999 899988765
No 357
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=74.45 E-value=1.1 Score=40.02 Aligned_cols=30 Identities=10% Similarity=0.111 Sum_probs=25.2
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
||||||.|. |+. |+|..+.++ ++.+.++..
T Consensus 52 rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr--~l~V~~~~~ 88 (103)
T 1s79_A 52 KGSIFVVFDSIESAKKFVE-TPGQKYKET--DLLILFKDD 88 (103)
T ss_dssp CCEEEEEESSHHHHHHHHT-SSCCCCTTT--TCEEEEHHH
T ss_pred ccEEEEEECCHHHHHHHHH-cCCCEECCE--EEEEEEchH
Confidence 799999993 887 899999998 888887543
No 358
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=73.25 E-value=1.3 Score=39.57 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=26.4
Q ss_pred cceEehhh-------hHHhhhcce--eccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVI--YVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~--~ls~~~~pi~~~~~~~~ 35 (852)
||||||.| .|++.|++. .+.++ +|+|.++...
T Consensus 52 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr--~l~V~~a~~~ 92 (102)
T 1x4d_A 52 INEAFIEMATTEDAQAAVDYYTTTPALVFGK--PVRVHLSQKY 92 (102)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHSCCEETTE--ECEEEEECCC
T ss_pred CCEEEEEECCHHHHHHHHHHHcCCCceECCc--EEEEEECCCC
Confidence 69999999 388988864 58888 9999998764
No 359
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.13 E-value=2.5 Score=37.61 Aligned_cols=31 Identities=13% Similarity=-0.031 Sum_probs=23.3
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQP 36 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~~ 36 (852)
||||||.|. |+..+++ +.++ +|+|.++...+
T Consensus 54 rGfaFVeF~~~~~A~~Ai~~~~~--~~g~--~l~V~~a~~~~ 91 (100)
T 2d9o_A 54 PGTAVVEFATVKAAELAVQNEVG--LVDN--PLKISWLEGQP 91 (100)
T ss_dssp SSEEEEEESCHHHHHHHHHTCCB--CSSS--BCEEECSSCCC
T ss_pred CCEEEEEECCHHHHHHHHHhcCC--CCCC--eEEEEEccCCC
Confidence 899999993 7777655 3456 89999977654
No 360
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=72.50 E-value=1.8 Score=42.22 Aligned_cols=32 Identities=3% Similarity=-0.069 Sum_probs=27.7
Q ss_pred cceEehhh-------hHHhhhcceeccC--CCCcEEEEeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSN--IDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~--~~~pi~~~~~~~~ 35 (852)
||||||.| .|+..|+|..+.+ . +|+|.++...
T Consensus 84 rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~--~L~V~~Ak~~ 124 (164)
T 1sjr_A 84 QFQALLQYADPVSAQHAKLSLDGQNIYNACC--TLRIDFSKLT 124 (164)
T ss_dssp CEEEEEEESCHHHHHHHHHHSTTBCSSSSCS--CEEEEECSSS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCc--EEEEEEecCC
Confidence 68999999 3999999999966 6 8999998764
No 361
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=71.93 E-value=0.54 Score=39.70 Aligned_cols=28 Identities=14% Similarity=0.005 Sum_probs=22.7
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEe
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWL 31 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~ 31 (852)
||||||.| .|+..|||..+.++ .+++.+
T Consensus 47 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~--~~~~~~ 81 (85)
T 1x4e_A 47 KGYGFVDFDSPSAAQKAVTALKASGVQAQ--MAKQSG 81 (85)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHTCCEE--SCCSSC
T ss_pred CcEEEEEECCHHHHHHHHHHhcCCeEeeE--EEeecC
Confidence 79999999 49999999988887 555443
No 362
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.21 E-value=3.1 Score=37.19 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=26.7
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.|. |+.. ++..+.++ +|+|.++.+.
T Consensus 69 ~g~afV~f~~~~~a~~Ai~~-~~~~~~g~--~l~V~~a~~~ 106 (116)
T 1x4b_A 69 RGFGFVTFSSMAEVDAAMAA-RPHSIDGR--VVEPKRAVAR 106 (116)
T ss_dssp CSEEEEECSSHHHHHHHHTS-CSEEETTE--EEEEECCSSC
T ss_pred CceEEEEeCCHHHHHHHHHh-CCcEECCE--EEEEEECCCC
Confidence 799999993 7777 99999998 9999888774
No 363
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=69.75 E-value=1.9 Score=38.64 Aligned_cols=31 Identities=10% Similarity=0.075 Sum_probs=26.8
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.|. |+.. |+..+.++ +|+|.++...
T Consensus 57 ~G~afV~F~~~~~a~~Al~~-~~~~~~gr--~i~v~~a~~~ 94 (114)
T 2cpy_A 57 LGQALVQFKNEDDARKSERL-HRKKLNGR--EAFVHVVTLE 94 (114)
T ss_dssp SSCEEEECSSHHHHHHHGGG-CSEEETTE--EEEEEEECHH
T ss_pred ceEEEEEECCHHHHHHHHHh-CCCccCCe--EEEEEECCHH
Confidence 799999994 7777 99999999 9999888764
No 364
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=69.24 E-value=1.5 Score=36.95 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=22.2
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEE
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLW 30 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~ 30 (852)
||||||.|. |+ .|||..+.++ ++++.
T Consensus 53 kg~afV~f~~~~~a~~A~-~l~g~~~~g~--~l~V~ 85 (87)
T 2hzc_A 53 KNFAFLEFRSVDETTQAM-AFDGIIFQGQ--SLKIR 85 (87)
T ss_dssp SSEEEEEESSHHHHHHHG-GGTTCEETTE--ECEEE
T ss_pred CcEEEEEcCCHHHHHHHH-hcCCCEECCe--EEEEe
Confidence 799999994 88 9999999988 66654
No 365
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=69.24 E-value=3 Score=40.01 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=33.8
Q ss_pred HHHhhcCChHHHHHHHHHcCccccCChHHHHHHHHhh
Q 003053 513 IKELMNLPLSELERRCRHNGLSLVGGREMMVARLLSL 549 (852)
Q Consensus 513 ~~~~~~~~~~~l~~~c~~~gl~~~~~~~~~~~rl~~~ 549 (852)
.-.|.++...+|..+|+.+||...|....||+||..+
T Consensus 58 ~g~L~kltV~eLK~~l~~~gL~~~GkKadLI~Ri~~~ 94 (151)
T 1jjr_A 58 KGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKH 94 (151)
T ss_dssp HTCTTSSCHHHHHHHHHHHTCCCCSSSHHHHHHHHHT
T ss_pred cCcHHhccHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Confidence 3468889999999999999999999999999999876
No 366
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=69.00 E-value=1.5 Score=36.70 Aligned_cols=22 Identities=5% Similarity=0.129 Sum_probs=19.4
Q ss_pred cceEehhh-------hHHhhhcceeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNI 23 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~ 23 (852)
||||||.| .|+..|||..+.++
T Consensus 47 ~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 47 KGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred eEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 79999999 49999999988775
No 367
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=68.90 E-value=2.8 Score=36.90 Aligned_cols=30 Identities=10% Similarity=0.104 Sum_probs=25.7
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
||||||.|. |+.. ++..+.++ .|.+..+..
T Consensus 57 ~G~afV~F~~~~~a~~A~~~-~~~~~~gr--~i~v~~~~~ 93 (104)
T 1wg5_A 57 TGEAFVQFASQEIAEKALKK-HKERIGHR--YIEIFKSSR 93 (104)
T ss_dssp CSEEEEEESSHHHHHHHHTT-TTCCSSSS--CCEEEEECT
T ss_pred ceEEEEEECCHHHHHHHHHh-CcchhCCc--EEEEEECCH
Confidence 799999994 8887 99999999 888888765
No 368
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.88 E-value=1.9 Score=37.78 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=25.9
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.|. |+.. ++..+.++ +|.|.++.+.
T Consensus 58 ~g~afV~f~~~~~a~~a~~~-~~~~~~g~--~l~V~~a~~~ 95 (105)
T 2dh8_A 58 RGFGFVKFKDPNCVGTVLAS-RPHTLDGR--NIDPKPCTPR 95 (105)
T ss_dssp EEEEEEEESSTTHHHHHHHH-CSEEETTE--EEBCCCSCCS
T ss_pred ceEEEEEECCHHHHHHHHHh-CCCeECCE--EEEEEEccCC
Confidence 689999994 8888 99999998 8888877654
No 369
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=67.42 E-value=2.4 Score=34.62 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=23.5
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEec
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLN 32 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~ 32 (852)
||||||.| .|+..|+ ..+.++ ++.+.++
T Consensus 42 ~g~afV~f~~~~~a~~a~~~~~-~~~~g~--~l~v~~a 76 (77)
T 1uaw_A 42 RGFGFVTFMDQAGVDKVLAQSR-HELDSK--TIDPKVA 76 (77)
T ss_dssp SSEEEECCCCTTHHHHHHHTTT-CCCSSC--CCEEEEC
T ss_pred CceEEEEEcCHHHHHHHHHhCC-CccCCE--EEEEEec
Confidence 79999999 4899999 888888 7877664
No 370
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=67.04 E-value=2.3 Score=39.77 Aligned_cols=34 Identities=6% Similarity=-0.001 Sum_probs=27.5
Q ss_pred cce-Eehhh-------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSF-SFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f-~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||| |||.| .|++.|+|..+.+...+|+|.++...
T Consensus 65 ~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 65 NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 678 99999 49999999999883238888887663
No 371
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=66.05 E-value=3 Score=37.11 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=25.7
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.|. |+..|+ ..+.++ .|++.++.+.
T Consensus 67 kg~afV~f~~~~~A~~Ai~~~~-~~l~g~--~l~V~~a~~~ 104 (109)
T 2rs2_A 67 RGFGFVTFMDQAGVDKVLAQSR-HELDSK--TIDPKVAFPR 104 (109)
T ss_dssp TTCEEEEESSHHHHHHHHHSSC-EEETTE--EEEEEECCCC
T ss_pred CcEEEEEECCHHHHHHHHHHCC-CcCCCE--EEEEEEccCC
Confidence 799999993 888774 888888 8999888764
No 372
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=64.91 E-value=3 Score=37.56 Aligned_cols=31 Identities=3% Similarity=-0.135 Sum_probs=24.3
Q ss_pred ceEehhh-------hHHhhhcceeccCCCCc-----EEEEeccCC
Q 003053 3 SFSFFLF-------SFFNAWHVIYVSNIDGP-----VFLWLNLFQ 35 (852)
Q Consensus 3 ~f~F~~f-------~A~~~m~g~~ls~~~~p-----i~~~~~~~~ 35 (852)
|||||.| .|+..|||..+.+. . |++..+.+.
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr--~~~~~~i~v~~~~~~ 94 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNTKFRSH--EGETAYIRVKVDGPR 94 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBCCCT--TSCCCBCEEEECC--
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCc--EeeeEEEEeccCCCC
Confidence 8999999 49999999999998 5 566665553
No 373
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=63.10 E-value=3.6 Score=38.10 Aligned_cols=33 Identities=6% Similarity=-0.192 Sum_probs=26.9
Q ss_pred ce-Eehhhh-------HHhhhcceeccCCCCcEEEEeccCC
Q 003053 3 SF-SFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 3 ~f-~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
|| |||.|. |+..|||..+.+...+|+|.++.+.
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 86 999993 9999999999874338899887663
No 374
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=61.21 E-value=2.1 Score=40.41 Aligned_cols=31 Identities=13% Similarity=-0.006 Sum_probs=26.0
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.|. |+ +|++..+.++ .|.|..+...
T Consensus 86 rGfaFV~F~~~e~A~~Al-~~~g~~l~gR--~i~V~~a~~~ 123 (139)
T 2hgn_A 86 TGEADVEFATHEEAVAAM-SKDRANMQHR--YIELFLNSTT 123 (139)
T ss_dssp SCCCEEECSHHHHHHHHT-TCCSCSSSSC--CCCCEECCCS
T ss_pred ceEEEEEeCCHHHHHHHH-hhCCCEECCE--EEEEEECCCC
Confidence 799999994 88 8899999998 8888776654
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.37 E-value=4.2 Score=35.69 Aligned_cols=30 Identities=10% Similarity=0.026 Sum_probs=26.1
Q ss_pred cceEehhh-------hHHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
.+++||+| .|++ |+|+.++++ .+++.++++
T Consensus 49 ~d~~fVtF~d~~sAlaAi~-mnG~~v~Gr--~LkV~lkt~ 85 (91)
T 2dnr_A 49 EDKMWVTFLEGSSALNVLS-LNGKELLNR--TITIALKSP 85 (91)
T ss_dssp SSSEEEEESSHHHHHHGGG-GTTCEETTE--EEEEEECCC
T ss_pred cCCEEEEECChHHHHHHHh-cCCeEeCCe--EEEEEeCCC
Confidence 56799999 4787 999999999 999988776
No 376
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=59.03 E-value=17 Score=41.71 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=44.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhC
Q 003053 65 TNLYVGNLSPQVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQ 130 (852)
Q Consensus 65 ~tLfVgnLp~~vte~~L~~~F~~fG~I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~ln 130 (852)
..++|+ +|..+...+|.++|+.||. ..|+.+ ...++||.|.+.+.|..++.+++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~wi----------ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWI----------DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEEC----------SSSEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEE----------cCCeEEEEECCHHHHHHHHHHHH
Confidence 456676 8999999999999999994 455554 34689999999999999999885
No 377
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=53.82 E-value=4.7 Score=34.47 Aligned_cols=33 Identities=15% Similarity=0.008 Sum_probs=21.8
Q ss_pred cceEehhhh---HHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLFS---FFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f~---A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
||||||.|. +...|+|..+......|.+.++.+
T Consensus 48 rGfaFV~F~~~~~A~~~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 48 RAFAFVTFADDKVAQSLCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp CSEEEEEESCHHHHHHHTTCEEEETTEEEEEEECC-
T ss_pred CCEEEEEECCHHHHHHHcCCCcccCCEEEEEEEcCC
Confidence 899999995 334677776553322777777655
No 378
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=53.71 E-value=5.2 Score=33.53 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=20.6
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEe
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWL 31 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~ 31 (852)
||||||.|. |+. +++..+.++ +|.+.+
T Consensus 53 ~g~afV~f~~~~~a~~A~~-~~~~~~~g~--~i~v~~ 86 (87)
T 3s7r_A 53 RGFGFILFKDAASVEKVLD-QKEHRLDGR--VIDPKK 86 (87)
T ss_dssp EEEEEEEESSTHHHHHHHH-SSCEEETTE--EEEEEE
T ss_pred ccEEEEEECCHHHHHHHHH-hCCCEECCE--EEEEEe
Confidence 799999994 774 467778887 777765
No 379
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.60 E-value=4.5 Score=37.24 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=24.2
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
||||||.|. |+.. |+..+.++ .|.+..+..
T Consensus 68 ~G~aFV~F~~~~~A~~Al~~-~~~~l~gR--~i~V~~a~~ 104 (123)
T 2dha_A 68 TGDAFVLFACEEYAQNALRK-HKDLLGKR--YIELFRSTA 104 (123)
T ss_dssp EEEEEECCSSHHHHHHHHTT-TTEESSSC--EECCEEECH
T ss_pred eeEEEEEECCHHHHHHHHHh-CCCeeCCe--EEEEEECCH
Confidence 799999993 7775 99999988 777776643
No 380
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.79 E-value=8.9 Score=32.69 Aligned_cols=31 Identities=3% Similarity=-0.052 Sum_probs=26.6
Q ss_pred ceEehhh-------hHHhhhcceeccCCCCcEEEEeccCC
Q 003053 3 SFSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 3 ~f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
|.|||.| .|+..|||..+.++ +|++.++.+.
T Consensus 55 ~~afV~f~~~~~a~~Ai~~l~g~~~~g~--~l~V~~a~~~ 92 (96)
T 2e44_A 55 AVVNVTYSSKDQARQALDKLNGFQLENF--TLKVAYIPDE 92 (96)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCBCSSC--BCEEEECCCC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCc--EEEEEEcCcc
Confidence 4599999 49999999999998 9999988764
No 381
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=50.00 E-value=5.1 Score=32.48 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=20.0
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEe
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWL 31 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~ 31 (852)
||||||.|. |+.. ++..+.++ .+.+.+
T Consensus 41 ~g~afV~f~~~~~a~~Ai~~-~~~~~~g~--~l~v~~ 74 (75)
T 1iqt_A 41 RGFCFITFKEEEPVKKIMEK-KYHNVGLS--KCEIKV 74 (75)
T ss_dssp CCCEEEECSSSHHHHHHHTT-SSCCBTTB--CCCEEE
T ss_pred CCEEEEEECCHHHHHHHHHh-CCCeECCE--EEEEEE
Confidence 799999994 7764 77778777 665544
No 382
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.71 E-value=12 Score=32.36 Aligned_cols=30 Identities=13% Similarity=0.089 Sum_probs=23.4
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.|. |+.. +..+.++ +|.+.++.+.
T Consensus 57 ~g~afV~f~~~~~a~~A~~~--~~~~~g~--~l~v~~a~~~ 93 (103)
T 2cqg_A 57 KGFGFVRFTEYETQVKVMSQ--RHMIDGR--WCDCKLPNSK 93 (103)
T ss_dssp EEEEEEEESSHHHHHHHHHS--CEEETTE--EEEEECCCTT
T ss_pred cceEEEEECCHHHHHHHHHc--CCeeCCe--EEEEEecCCC
Confidence 689999994 6664 5678888 8888887764
No 383
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.92 E-value=6.3 Score=34.90 Aligned_cols=22 Identities=9% Similarity=0.261 Sum_probs=19.5
Q ss_pred cceEehhh-------hHHhhhcceeccCC
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVSNI 23 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls~~ 23 (852)
||||||.| .|+..|||..+.+.
T Consensus 66 ~g~afV~f~~~~~a~~A~~~l~g~~~~~~ 94 (114)
T 1x5o_A 66 RGVGFARMESTEKCEAVIGHFNGKFIKTP 94 (114)
T ss_dssp EEEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence 69999999 49999999998777
No 384
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=44.24 E-value=9.3 Score=35.93 Aligned_cols=32 Identities=6% Similarity=0.030 Sum_probs=26.6
Q ss_pred cceEehhhh---------------HHh--hhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLFS---------------FFN--AWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f~---------------A~~--~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.|. |+. .|+|..+.++ +|+|.++...
T Consensus 48 lGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr--~irV~ln~~g 96 (136)
T 2j8a_A 48 LHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGF--KFEVILNKHS 96 (136)
T ss_dssp EEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTE--EEEEEECCTT
T ss_pred eeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCc--EEEEEECccc
Confidence 799999995 445 6799999999 9999987664
No 385
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=43.00 E-value=83 Score=30.49 Aligned_cols=84 Identities=12% Similarity=0.232 Sum_probs=52.6
Q ss_pred cccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCCCchhhHHHHHhhhHHHHHHHHHHHhh-hccccchHH
Q 003053 355 ADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRS-ITGRITAEA 433 (852)
Q Consensus 355 ~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~yr~~fe~~Lp~if~~l~~~~~~-~~~r~~a~~ 433 (852)
...+.+.+..|.+.|...+ ....|.-|-|+-=++.||. ..|...+.. ..++..|..+... ..+......
T Consensus 45 ~~~~k~A~ral~krl~~~n--~~vql~AL~LLd~~vkNCG------~~Fh~evas--~~Fl~eL~kl~~~k~~~~~~~~~ 114 (171)
T 1juq_A 45 LEGPQIAVRLLAHKIQSPQ--EWEALQALTVLEACMKNCG------RRFHNEVGK--FRFLNELIKVVSPKYLGDRVSEK 114 (171)
T ss_dssp TTHHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHSH------HHHHHHHTS--HHHHHHHHHHHCCCCCCTTSCHH
T ss_pred CccHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHcC------HHHHHHHhh--HHHHHHHHHHhccccCCCCCCHH
Confidence 3457888899999996543 4566778888888888885 223332222 1222222222221 112335679
Q ss_pred HHHHHHHHHHHhccC
Q 003053 434 LKERVLKVLQVWSDW 448 (852)
Q Consensus 434 ~k~kv~~vL~iWe~~ 448 (852)
.++||+.+|..|...
T Consensus 115 Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 115 VKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999875
No 386
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=42.26 E-value=9.7 Score=34.23 Aligned_cols=32 Identities=6% Similarity=0.063 Sum_probs=25.1
Q ss_pred cceEehhhh------HHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLFS------FFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f~------A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.|. ..-+|||..+.+. +|+|.++...
T Consensus 78 ~g~afV~f~~~~~a~~A~~l~g~~~~g~--~l~V~~a~~~ 115 (124)
T 2jwn_A 78 KGYAYIEFAERNSVDAAVAMDETVFRGR--TIKVLPKRTN 115 (124)
T ss_dssp EEEEEEEESSHHHHHHHHTTTTCEETTE--ECEEEESSCC
T ss_pred ccEEEEEECCHHHHHHHHhcCCCeECCe--EEEEEECCCC
Confidence 799999993 0008999999998 8999887653
No 387
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.06 E-value=9.6 Score=32.51 Aligned_cols=28 Identities=4% Similarity=-0.063 Sum_probs=23.6
Q ss_pred eEehhh-------hHHhhhcceeccCCCCcEEEEeccC
Q 003053 4 FSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 4 f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
||||.| .|+. |+|..+.++ +|.+.++..
T Consensus 47 ~afV~f~~~~~a~~ai~-l~g~~~~g~--~l~V~~a~~ 81 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS-QSQHSLGGH--RLRVRPREQ 81 (94)
T ss_dssp EEEEEESSHHHHHHHHT-CSCCEETTE--ECCCBCSCC
T ss_pred EEEEEECCHHHHHHHHh-cCCeEECCE--EEEEEECCc
Confidence 999999 4888 999999998 787776554
No 388
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=38.14 E-value=1.7e+02 Score=27.53 Aligned_cols=84 Identities=11% Similarity=0.276 Sum_probs=53.3
Q ss_pred cccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCCCchhhHHHHHhhhHHHHHHHHHHHhh-hccccchHH
Q 003053 355 ADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRS-ITGRITAEA 433 (852)
Q Consensus 355 ~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~yr~~fe~~Lp~if~~l~~~~~~-~~~r~~a~~ 433 (852)
...+.+.+..|.+.|...+ ....|.-|-|+.=.+.||.. .|...+.. -..+..|..+... ..|.-....
T Consensus 33 ~~~~k~a~rai~krl~~~n--~~vql~AL~LLe~~vkNCG~------~fh~evas--~~Fl~eL~kl~~~k~~~~~~~~~ 102 (148)
T 1mhq_A 33 PNGPTHAPWLLAHKIQSPQ--EKEALYALTVLEMCMNHCGE------KFHSEVAK--FRFLNELIKVLSPKYLGSWATGK 102 (148)
T ss_dssp SHHHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHSCH------HHHHHHTS--HHHHHHHHHTTCCSTTSCCCCHH
T ss_pred CccHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHcCH------HHHHHHhh--HHHHHHHHHHHccccCCCCCCHH
Confidence 3458889999999996443 55678888888888899862 23333221 1222222222221 112234679
Q ss_pred HHHHHHHHHHHhccC
Q 003053 434 LKERVLKVLQVWSDW 448 (852)
Q Consensus 434 ~k~kv~~vL~iWe~~ 448 (852)
.++||+.+|..|...
T Consensus 103 Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 103 VKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999875
No 389
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=37.92 E-value=8.8 Score=33.20 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=22.3
Q ss_pred cceEehhhh-------HHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLFS-------FFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.|. |+. +|..+.+. .+.+.++...
T Consensus 50 ~g~afV~f~~~~~a~~Ai~--~~~~~~g~--~l~v~~a~~~ 86 (102)
T 2xs2_A 50 KGYGFVSFYNDVDVQKIVE--SQINFHGK--KLKLGPAIRK 86 (102)
T ss_dssp EEEEEEEESSCCCHHHHTT--CCCEETTE--ECEEEEEEEC
T ss_pred cceEEEEECCHHHHHHHHh--CCCeECCE--EEEEEECCcC
Confidence 699999993 666 67777777 7776666653
No 390
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.83 E-value=17 Score=30.37 Aligned_cols=34 Identities=15% Similarity=0.032 Sum_probs=21.3
Q ss_pred cceEehhhh---HHhhhcceeccCCCCcEEEEeccCC
Q 003053 2 RSFSFFLFS---FFNAWHVIYVSNIDGPVFLWLNLFQ 35 (852)
Q Consensus 2 r~f~F~~f~---A~~~m~g~~ls~~~~pi~~~~~~~~ 35 (852)
||||||.|. +-..+++..+.....+|.+.++.+.
T Consensus 42 ~g~afV~f~~~~~a~~~~~~~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 42 RAFAFVTFADDQIAQSLCGEDLIIKGISVHISNAEPK 78 (88)
T ss_dssp CSCCEEECSCHHHHHHTTTCEEEETTEEEEEECCCCC
T ss_pred CCEEEEEECCHHHHHHHhcCCceeCCEEEEEEecCCC
Confidence 799999995 3345666544333227777776653
No 391
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=37.72 E-value=1.3e+02 Score=30.36 Aligned_cols=82 Identities=17% Similarity=0.292 Sum_probs=50.8
Q ss_pred hccccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCCCchhhHHHHHhhhHHHHHHHHHHHhhhccccchH
Q 003053 353 DNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAE 432 (852)
Q Consensus 353 ~h~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~a~ 432 (852)
.....+.+.+.+|.+.|...+ ....|.-|-|+-=.+.||... |...+.. -..++.|..+. ++....
T Consensus 38 ~~~~~~k~a~ral~krl~~~n--~~v~l~aL~LLe~~vkNcG~~------f~~eias--~~fl~~l~~l~----~~~~~~ 103 (226)
T 3zyq_A 38 QGDTQAKYAVNSIKKKVNDKN--PHVALYALEVMESVVKNCGQT------VHDEVAN--KQTMEELKDLL----KRQVEV 103 (226)
T ss_dssp TTSSCHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHHCHH------HHHHHSS--HHHHHHHHHHH----HHCCCH
T ss_pred CCCccHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHhcchH------HHHhhcc--HHHHHHHHHHh----ccCCCH
Confidence 344558899999999997433 456677778888888888622 2222111 11111122121 123457
Q ss_pred HHHHHHHHHHHHhccC
Q 003053 433 ALKERVLKVLQVWSDW 448 (852)
Q Consensus 433 ~~k~kv~~vL~iWe~~ 448 (852)
..++||+.+|..|.+.
T Consensus 104 ~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 104 NVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999999999863
No 392
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.96 E-value=12 Score=33.29 Aligned_cols=15 Identities=27% Similarity=0.760 Sum_probs=12.5
Q ss_pred cceEehhhh-------HHhhhc
Q 003053 2 RSFSFFLFS-------FFNAWH 16 (852)
Q Consensus 2 r~f~F~~f~-------A~~~m~ 16 (852)
||||||.|. |++.|+
T Consensus 52 ~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 52 KGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp TSEEEECCSSHHHHHHHHHHSE
T ss_pred ccEEEEEECCHHHHHHHHHhhh
Confidence 799999994 788873
No 393
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=34.86 E-value=10 Score=41.29 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=17.8
Q ss_pred cceEehhh-------hHHhhhcceecc
Q 003053 2 RSFSFFLF-------SFFNAWHVIYVS 21 (852)
Q Consensus 2 r~f~F~~f-------~A~~~m~g~~ls 21 (852)
||||||.| .|++.|||..+-
T Consensus 56 kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 56 KPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp CSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 89999999 499999998873
No 394
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=34.05 E-value=1.9e+02 Score=28.90 Aligned_cols=81 Identities=12% Similarity=0.275 Sum_probs=51.3
Q ss_pred ccccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCCCchhhHHHHHhhhHHHHHHHHHHHhhhccccchHH
Q 003053 354 NADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEA 433 (852)
Q Consensus 354 h~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~a~~ 433 (852)
....+.+.+..|.+.|...+ ....+.-|.|+.-++.||.. .|...+.. -..++.|..+... -....
T Consensus 36 ~~~~~k~a~r~l~krl~~~n--~~~~l~aL~Lle~~vkNcG~------~f~~eva~--~~fl~~l~~l~~~----~~~~~ 101 (220)
T 1dvp_A 36 KDVTPKNAFAAIKKKMNSPN--PHSSCYSLLVLESIVKNCGA------PVHEEVFT--KENCEMFSSFLES----TPHEN 101 (220)
T ss_dssp TSSCHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHSHH------HHHHHHSS--HHHHHHHHHHHHH----CSCHH
T ss_pred CCcCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhccCH------HHHHHHHh--HHHHHHHHHHhcC----CCcHH
Confidence 34468899999999996543 45678888899999999952 23332211 0111112222221 13468
Q ss_pred HHHHHHHHHHHhccC
Q 003053 434 LKERVLKVLQVWSDW 448 (852)
Q Consensus 434 ~k~kv~~vL~iWe~~ 448 (852)
.++||+.++..|.+.
T Consensus 102 Vk~kil~li~~W~~~ 116 (220)
T 1dvp_A 102 VRQKMLELVQTWAYA 116 (220)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999864
No 395
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp}
Probab=30.25 E-value=58 Score=28.80 Aligned_cols=38 Identities=24% Similarity=0.382 Sum_probs=33.3
Q ss_pred HHhhcCChHHHHHHHHHcCccccCChHHHHHHHHhhHH
Q 003053 514 KELMNLPLSELERRCRHNGLSLVGGREMMVARLLSLED 551 (852)
Q Consensus 514 ~~~~~~~~~~l~~~c~~~gl~~~~~~~~~~~rl~~~~~ 551 (852)
.++.-..+.||+-.--+.||+..|..+.|++|.+.+=.
T Consensus 15 ~kl~~frikelkdvl~~lgl~kqgkKqdL~Dril~lls 52 (110)
T 2rno_A 15 DKLAYFRIKELKDILNQLGLPKQGKKQDLIDRVLALLT 52 (110)
T ss_dssp HHHHHSCHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHhCCcccCccHHHHHHHHHHcC
Confidence 46677889999999999999999999999999987643
No 396
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=30.18 E-value=3.1e+02 Score=25.82 Aligned_cols=82 Identities=11% Similarity=0.202 Sum_probs=49.6
Q ss_pred cHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCCCchhhHHHHHhhhHHHHHHHHHHHhhh-ccccchHHHH
Q 003053 357 AAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRSI-TGRITAEALK 435 (852)
Q Consensus 357 ~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~yr~~fe~~Lp~if~~l~~~~~~~-~~r~~a~~~k 435 (852)
.+.+.+..|.+.|... .....|.-|-|+-=.+.||..+ |...+. =-..+..|..+...- .|.-.....+
T Consensus 45 ~pk~a~ral~krl~~~--n~~v~l~AL~LLe~cvkNCG~~------fh~eia--s~~Fl~eL~kl~~~k~~~~~~~~~Vk 114 (149)
T 3g2s_A 45 GPPLATRLLAHKIQSP--QEWEAIQALTVLETCMKSCGKR------FHDEVG--KFRFLNELIKVVSPKYLGSRTSEKVK 114 (149)
T ss_dssp HHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHCCHH------HHHHHT--SHHHHHHHHHHHCTTTTGGGSCHHHH
T ss_pred cHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhcCHH------HHHHHh--hHHHHHHHHHHHcccccCCCCCHHHH
Confidence 4778889999999643 3456677778888888898622 222111 111222222222110 1122457999
Q ss_pred HHHHHHHHHhccC
Q 003053 436 ERVLKVLQVWSDW 448 (852)
Q Consensus 436 ~kv~~vL~iWe~~ 448 (852)
+||+.+|..|...
T Consensus 115 ~kil~li~~W~~~ 127 (149)
T 3g2s_A 115 NKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999874
No 397
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=28.98 E-value=2.3e+02 Score=27.02 Aligned_cols=75 Identities=12% Similarity=0.285 Sum_probs=50.1
Q ss_pred cccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCCCchhhHH-----HHHhhhHHHHHHHHHHHhhhcccc
Q 003053 355 ADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYRT-----KFEATLPDIMESFNDLYRSITGRI 429 (852)
Q Consensus 355 ~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~yr~-----~fe~~Lp~if~~l~~~~~~~~~r~ 429 (852)
...+.+.+.+|.+.|...+ ....|.-|-|+.=++.||.. .|.. .|-..|..|+ . +-
T Consensus 47 ~~~~keA~ral~krl~~~n--~~vql~AL~LLd~~vkNcG~------~Fh~evas~~Fl~el~~l~-------~----~~ 107 (163)
T 1x5b_A 47 PNGAKDCLKAIMKRVNHKV--PHVALQALTLLGACVANCGK------IFHLEVCSRDFATEVRAVI-------K----NK 107 (163)
T ss_dssp SSHHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHTCH------HHHHHHTSHHHHHHHHHHH-------H----TT
T ss_pred CccHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHhhH------HHHHHHhhHHHHHHHHHHH-------c----cC
Confidence 3457888999999986543 45678888888888899862 2432 2222233322 1 11
Q ss_pred chHHHHHHHHHHHHHhccC
Q 003053 430 TAEALKERVLKVLQVWSDW 448 (852)
Q Consensus 430 ~a~~~k~kv~~vL~iWe~~ 448 (852)
.....++||+.+|..|.+.
T Consensus 108 ~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 108 AHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 3468999999999999863
No 398
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=28.32 E-value=12 Score=35.80 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=0.0
Q ss_pred HhhcCChHHHHHHHHHcCccccCChHHHHHHHHhh
Q 003053 515 ELMNLPLSELERRCRHNGLSLVGGREMMVARLLSL 549 (852)
Q Consensus 515 ~~~~~~~~~l~~~c~~~gl~~~~~~~~~~~rl~~~ 549 (852)
.|.++...+|.-+|+..||...|....||+||..+
T Consensus 114 ~l~klTV~~Lk~~l~~~gl~~~GkKaeLieRi~~~ 148 (151)
T 1jjr_A 114 TLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKH 148 (151)
T ss_dssp -----------------------------------
T ss_pred ccccccHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 56678889999999999999999999999999754
No 399
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=27.58 E-value=3.7e+02 Score=29.54 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=76.6
Q ss_pred CCCHHHHHHHHHHHHhcccC------HHHHHHHHH-HHHhccccHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccC
Q 003053 321 TLTDSQRDEFEDMLRALTLE------RSQIKEAMG-FALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNS 393 (852)
Q Consensus 321 ~L~~~~~~~l~~lL~~Lt~t------r~sI~~~~~-w~l~h~~~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns 393 (852)
+|-++-+.=|...|=.|... -..+..|+. |+-....-+..++..|+++- +.|..++.+..|..+.+||-..
T Consensus 250 PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~W--P~tns~KevlFL~eleeiLe~~ 327 (392)
T 2jak_A 250 PLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYW--PKTHSPKEVMFLNELEEILDVI 327 (392)
T ss_dssp SCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSS--CSSCCTTHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCCCchHHHHHHHHHHHHHHhC
Confidence 45555555566666666332 335666654 55555556888888888776 4455678899999999999877
Q ss_pred CCCCCCchhhHHHHHhhhHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHhccCcc
Q 003053 394 SAPVKNASAYRTKFEATLPDIMESFNDLYRSITGRITAEALKERVLKVLQVWSDWFL 450 (852)
Q Consensus 394 ~~~~~na~~yr~~fe~~Lp~if~~l~~~~~~~~~r~~a~~~k~kv~~vL~iWe~~~v 450 (852)
. -..|.++++.+|..++....+. .-+-.++.|.+|..-.+
T Consensus 328 ~---------~~~f~~i~~~lF~~la~ci~S~--------hfqVAErAL~~wnNe~i 367 (392)
T 2jak_A 328 E---------PSEFVKIMEPLFRQLAKCVSSP--------HFQVAERALYYWNNEYI 367 (392)
T ss_dssp C---------HHHHHHHHHHHHHHHHHHHTCS--------SHHHHHHHHGGGGCHHH
T ss_pred C---------HHHHHHHHHHHHHHHHHHHcCC--------cHHHHHHHHHHhCcHHH
Confidence 5 4578889999998887666542 23455778999987533
No 400
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.49 E-value=64 Score=24.86 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=17.6
Q ss_pred HcCccccCChHHHHHHHHhhH
Q 003053 530 HNGLSLVGGREMMVARLLSLE 550 (852)
Q Consensus 530 ~~gl~~~~~~~~~~~rl~~~~ 550 (852)
.-|-+..|.+|+||+||..|-
T Consensus 22 E~GAPi~g~REElvdRLk~Y~ 42 (58)
T 2do5_A 22 EIGAPIQGNREELVERLQSYT 42 (58)
T ss_dssp HHTCCCCSCHHHHHHHHHHHH
T ss_pred HhCCcccccHHHHHHHHHHHh
Confidence 348888999999999998764
No 401
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=27.27 E-value=33 Score=31.97 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=32.0
Q ss_pred HHhhcCChHHHHHHHHHcCccccCChHHHHHHHHhh
Q 003053 514 KELMNLPLSELERRCRHNGLSLVGGREMMVARLLSL 549 (852)
Q Consensus 514 ~~~~~~~~~~l~~~c~~~gl~~~~~~~~~~~rl~~~ 549 (852)
..+.++..+.|..+|...+|...|+.+++|+||+.+
T Consensus 70 e~l~K~~~~~L~~~c~iL~l~~~g~keelv~ril~F 105 (131)
T 2jx3_A 70 EMLKKFRNAMLKSICEVLDLERSGVNSELVKRILNF 105 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCSCSCHHHHHHHHHHT
T ss_pred HHHHccCHHHHHHHHHHHCCCCCCcHHHHHHHHHHH
Confidence 345678899999999999999999999999999865
No 402
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.73 E-value=26 Score=30.87 Aligned_cols=28 Identities=14% Similarity=-0.040 Sum_probs=23.3
Q ss_pred eEehhh-------hHHhhhcceeccCCCCcEEEEeccC
Q 003053 4 FSFFLF-------SFFNAWHVIYVSNIDGPVFLWLNLF 34 (852)
Q Consensus 4 f~F~~f-------~A~~~m~g~~ls~~~~pi~~~~~~~ 34 (852)
-+||+| +|+. |+|..+.++ .+++.+.++
T Consensus 60 ~~fVtF~d~~sAl~AI~-ldG~~v~Gr--~L~V~~k~~ 94 (95)
T 1ufw_A 60 QMLVTFADSHSALSVLD-VDGMKVKGR--AVKISGPSS 94 (95)
T ss_dssp EEEEECSCSHHHHHHHH-GGGSEETTE--EEEEECCCC
T ss_pred cEEEEEcChHHHHHHHh-cCCeeeCCe--EEEEeccCC
Confidence 389999 5887 999999999 888877554
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=22.08 E-value=1.3e+02 Score=24.37 Aligned_cols=68 Identities=21% Similarity=0.346 Sum_probs=41.9
Q ss_pred eEEEcC-CCCCCCHHHHHHHhccCCC-----eeEEEEeccCCccccCCcccEEEEEECCHHHHHHHHHHhCCceecCeEE
Q 003053 66 NLYVGN-LSPQVDENFLLRTFGRFGP-----IASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYEL 139 (852)
Q Consensus 66 tLfVgn-Lp~~vte~~L~~~F~~fG~-----I~~vki~~pr~d~~tg~~rg~gFV~F~~~~~A~~Ai~~lnG~~l~G~~l 139 (852)
+|||+. --..+...+|..++..-+. |-.|.|. -.|.||+-.. ..|..++..|++..+.|+.+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----------d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~ 69 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-----------DNASYVEILN-GKGPHVLKVMKNTTVKGKQL 69 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-----------SSCEEEEECT-TCHHHHHHHHTTCCC---CC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-----------CCcEEEEECH-HHHHHHHHHhccccCcCceE
Confidence 455531 1235666777777764443 5566665 2588998864 56788999999999999999
Q ss_pred EEeecc
Q 003053 140 KIGWGK 145 (852)
Q Consensus 140 ~V~~ak 145 (852)
+|..++
T Consensus 70 ~v~~~~ 75 (76)
T 2g0c_A 70 KVNKAN 75 (76)
T ss_dssp CEEECC
T ss_pred EEEECC
Confidence 887654
No 404
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=20.81 E-value=3.8e+02 Score=24.70 Aligned_cols=71 Identities=11% Similarity=0.333 Sum_probs=46.6
Q ss_pred cHHHHHHHHHHHhcccCCCccchhhhhhhhhhhhccCCCCCCCchhhH-----HHHHhhhHHHHHHHHHHHhhhccccch
Q 003053 357 AAGEIVEVLTESLTLKETPIPTKVARLMLVSDVLHNSSAPVKNASAYR-----TKFEATLPDIMESFNDLYRSITGRITA 431 (852)
Q Consensus 357 ~a~eiv~~l~~~l~~~~t~~~~KL~~LYLinDIL~ns~~~~~na~~yr-----~~fe~~Lp~if~~l~~~~~~~~~r~~a 431 (852)
.+.+.+.+|.+.|...+ ....+.-|-|+.=.+.||.. .|. ..|-..|..++. . ..
T Consensus 39 ~~k~a~rai~Krl~~~n--~~~ql~AL~LLe~~vkNcG~------~f~~evas~~Fl~el~~l~~-------~-----~~ 98 (140)
T 3ldz_A 39 GPKDCLRSIMRRVNHKD--PHVAMQALTLLGACVSNCGK------IFHLEVCSRDFASEVSNVLN-------K-----GH 98 (140)
T ss_dssp HHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHSCH------HHHHHHSSHHHHHHHHHHHH-------H-----SC
T ss_pred CHHHHHHHHHHHHcCCC--hHHHHHHHHHHHHHHHhcCH------HHHHHHhhHHHHHHHHHHhc-------c-----CC
Confidence 47788889999986543 44566667788778888862 232 223232333221 1 34
Q ss_pred HHHHHHHHHHHHHhcc
Q 003053 432 EALKERVLKVLQVWSD 447 (852)
Q Consensus 432 ~~~k~kv~~vL~iWe~ 447 (852)
...++||+.+|..|.+
T Consensus 99 ~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 99 PKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6899999999999986
Done!