BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003054
(852 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 119/580 (20%), Positives = 219/580 (37%), Gaps = 89/580 (15%)
Query: 184 LENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKTNVSR- 242
+ F RW +E P + L YDA + + EA + + +SR
Sbjct: 246 VSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFR-----NLRKQRIEISRR 300
Query: 243 -NATDLEA-----FGISQNGPKLLQALSSTRFKGLTGDYIF-VDGQLQSSAFEIINVN-N 294
NA D A +G G ++ +AL + +GL+G+ F +G+ + I+ + N
Sbjct: 301 GNAGDCLANPAVPWG---QGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTN 357
Query: 295 GARGVGFWTPEKGXXXXXXXXXXXXXXXXPIIWPGDSTSDPKGWEVPTNEKKLRIGVPVK 354
G R +G+W+ ++ D TS G E T + P
Sbjct: 358 GPRKIGYWSE-----------------VDKMVLTEDDTS---GLEQKTVVVTTILESPYV 397
Query: 355 KGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGS 411
++ + + + + GYCVD+ + + + V YG D +
Sbjct: 398 MMKANHAALAGNERYE------GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-I 450
Query: 412 YNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQ 471
+N +V ++ G+ D + +TI R +DF+ P+ G+S+++ K + FL
Sbjct: 451 WNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLD 510
Query: 472 PLTWDLWVTXXXXXXXXXXXXWVLEHRV-----NEDFRGPAGQQ---------VGTSFWF 517
PL +++W+ +++ E+F Q + S WF
Sbjct: 511 PLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWF 570
Query: 518 SFSTMVFSQRERVISNLA---RIVVIVWCFVVLILTQSYXXXXXXXXXXXXXXXXITDVK 574
S F Q+ IS + RIV VW F LI+ SY I +
Sbjct: 571 SLG--AFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAE 628
Query: 575 MLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYN-------SPEDCHELFQKGSVNGGI 627
L K+ + + Y G+ G K+ F K+ V++ S E +F + + G
Sbjct: 629 DLSKQTE-IAY--GTLDSGSTKEF-FRRSKIAVFDKMWTYMRSAEPS--VFVRTTAEGVA 682
Query: 628 AAAFDEIPYMKLL---IGQYCSKYA-----MIEPKFKTAGFGFVFPLHSPLVHDVSKAIL 679
+ Y LL + +Y + + + G+G P S L V+ A+L
Sbjct: 683 RVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVL 742
Query: 680 NVTEGDKMKEIEDAWFKKHSSC--PDASTVVSSRSLGLNS 717
++E + ++++ W+ C D+ + + +L L++
Sbjct: 743 KLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSN 782
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 119/279 (42%), Gaps = 26/279 (9%)
Query: 18 LSFSATSPSLTSIRS-PYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIP 76
LSF+AT+P L + PYFFR +D++ AI ++K + W+ + D Q E+
Sbjct: 113 LSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVRN 172
Query: 77 SLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKAN 136
LT L D + S + D + KL R+ + ++ +++F A
Sbjct: 173 DLTGVLYGEDIEI---SDTESFSNDPCT--SVKKLKGNDVRIILGQFDQNMAAKVFCCAY 227
Query: 137 EIGLMNKGCVWIM-----------TDGMTNLLRTLEPSVIDSMQGVIGVGPHVPKTKALE 185
E + WI+ N R L +++ +M+G IGV +K ++
Sbjct: 228 EENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIK 287
Query: 186 NFRVRWKRNFLQE-NPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKTNVSRNA 244
+ + + +E N V + F AYD +A+ +++A + + S
Sbjct: 288 TISGKTPQQYEREYNNKRSGVGPSKFHGYAYDGIWVIAKTLQRA------METLHASSRH 341
Query: 245 TDLEAFGISQN--GPKLLQALSSTRFKGLTGDYIFVDGQ 281
++ F + + G +L A++ T F G+TG +F +G+
Sbjct: 342 QRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVFRNGE 380
>pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Aspartate
pdb|3OEL|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With D- Glutamate
pdb|3OEM|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With N- Methyl-D-Aspartate
pdb|3OEN|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Glutamate
Length = 286
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 56/116 (48%)
Query: 341 PTNEKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVP 400
P + +R VP + + + D E G+C+D+ K + + ++ V
Sbjct: 25 PISGTCIRDSVPCRSQLNRTHSPPPDAPRPEKRCCKGFCIDILKRLAHTIGFSYDLYLVT 84
Query: 401 YGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIV 456
G+ G +N ++ +VF D +G +TI RS VDF++P+ E+G+S++V
Sbjct: 85 NGKHGKKIDGVWNGMIGEVFYQRADMAIGSLTINEERSEIVDFSVPFVETGISVMV 140
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The
Group Iii Metabotropic Glutamate Receptor
Length = 501
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 132/339 (38%), Gaps = 57/339 (16%)
Query: 14 QVPILSFSATSPSLTSIRSPYFF-RGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGE 72
Q+P +S+++T+P L+ R FF R DS QA A+ I+KA GW + + YGE
Sbjct: 141 QIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGE 200
Query: 73 EMIPSLTDALQAIDTRVPYRSVISPLATD------DQIEKELYKLFTMQTRVFILHMLPS 126
+ + S T + +SV P D+I K+L L T +R ++
Sbjct: 201 KGVESFTQISKEAGGLCIAQSVRIPQERKDRTIDFDRIIKQL--LDTPNSRAVVIFANDE 258
Query: 127 LGSRIF---EKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIGVGPHVP---- 179
+I ++A+++G +W+ +D + + L D +G I + P
Sbjct: 259 DIKQILAAAKRADQVGHF----LWVGSDSWGSKINPLHQHE-DIAEGAITIQPKRATVEG 313
Query: 180 -----KTKALENFRVR-WKRNFLQENPSIVDVELNIFGLLAYDATRALA--------EAV 225
++ LEN R W + +EN + +L I G D R
Sbjct: 314 FDAYFTSRTLENNRRNVWFAEYWEEN---FNCKLTISGSKKEDTDRKCTGQERIGKDSNY 370
Query: 226 EKAGITSFGFDKTNVSRNA-----TDLEA--FGI-----SQNGPKLLQALSSTRFKGLTG 273
E+ G F D +A DL A G+ G KLL+ + F G G
Sbjct: 371 EQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPEMEQAGGKKLLKYIRHVNFNGSAG 430
Query: 274 DYIFVD------GQLQSSAFEIINVNN-GARGVGFWTPE 305
+ + G+ ++ N N G R +G WT E
Sbjct: 431 TPVMFNKNGDAPGRYDIFQYQTTNTTNPGYRLIGQWTDE 469
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 134/339 (39%), Gaps = 57/339 (16%)
Query: 14 QVPILSFSATSPSLTSIRSPYFF-RGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGE 72
Q+P +S+++T+P L+ R FF R DS QA A+ I+KA GW + + YGE
Sbjct: 141 QIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGE 200
Query: 73 EMIPSLTDALQAIDTRVPYRSVISPLATD------DQIEKELYKLFTMQTRVFILHMLPS 126
+ + S T + +SV P D+I K+L L T +R ++
Sbjct: 201 KGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQL--LDTPNSRAVVIFANDE 258
Query: 127 LGSRIF---EKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIGVGPHVP---- 179
+I ++A+++G +W+ +D + + L D +G I + P
Sbjct: 259 DIKQILAAAKRADQVGHF----LWVGSDSWGSKINPLHQHE-DIAEGAITIQPKRATVEG 313
Query: 180 -----KTKALENFRVR-WKRNFLQENPSIVDVELNIFGLLAYDATRALA--------EAV 225
++ LEN R W + +EN + +L I G D R
Sbjct: 314 FDAYFTSRTLENNRRNVWFAEYWEEN---FNCKLTISGSKKEDTDRKCTGQERIGKDSNY 370
Query: 226 EKAGITSFGFDKTNVSRNA-----TDLEA--FGI-----SQNGPKLLQALSSTRFKGLTG 273
E+ G F D +A DL A G+ G KLL+ + + F G G
Sbjct: 371 EQEGKVQFVIDAVYAMAHALHHMNKDLCADYRGVCPEMEQAGGKKLLKYIRNVNFNGSAG 430
Query: 274 DYIFVD------GQLQSSAFEIINVNN-GARGVGFWTPE 305
+ + G+ ++ N +N G R +G WT E
Sbjct: 431 TPVMFNKNGDAPGRYDIFQYQTTNTSNPGYRLIGQWTDE 469
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In
Complex With Glutamate
pdb|2A5T|B Chain B, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 284
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 341 PTNEKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVT----GYCVDVFKAVIQELPYAVAY 396
P E +R VP +K V I+ T E +V G+C+D+ K + + + +
Sbjct: 25 PLTETCVRNTVPCRKF------VKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFTYDL 78
Query: 397 DFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIV 456
V G+ + +N ++ +V VG +TI RS VDF++P+ E+G+S++V
Sbjct: 79 YLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMV 138
>pdb|1PB8|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Serine At 1.45 Angstroms Resolution
pdb|1PB9|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Cycloserine At 1.60 Angstroms Resolution
Length = 292
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 15/131 (11%)
Query: 350 GVPVKKGFSDFVNVTI--DPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQ---- 403
G PVKK N T P+ P G+C+D+ + + + + V G+
Sbjct: 36 GDPVKKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQ 95
Query: 404 --PDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVP---- 457
+ S+ +N ++ ++ G+ D +V +TI R+ Y++F+ P+ G++++V
Sbjct: 96 ERVNNSNKKEWNGMMGELLSGQADMIVAPLTINTERAQYIEFSKPFKYQGLTILVKKGTR 155
Query: 458 ---IKDSKKRN 465
I D + RN
Sbjct: 156 ITGINDPRLRN 166
>pdb|1PB7|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Glycine At 1.35 Angstroms Resolution
pdb|1PBQ|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1PBQ|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1Y1M|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1M|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1Z|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Acbc
pdb|1Y20|A Chain A, Crystal Structure Of The Nr1 Ligand-binding Core In
Complex With Acpc
pdb|2A5T|A Chain A, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 292
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 15/131 (11%)
Query: 350 GVPVKKGFSDFVNVTI--DPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQ---- 403
G PVKK N T P+ P G+C+D+ + + + + V G+
Sbjct: 36 GDPVKKVICTGPNDTSPGSPRHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQ 95
Query: 404 --PDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVP---- 457
+ S+ +N ++ ++ G+ D +V +TI R+ Y++F+ P+ G++++V
Sbjct: 96 ERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTR 155
Query: 458 ---IKDSKKRN 465
I D + RN
Sbjct: 156 ITGINDPRLRN 166
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/320 (20%), Positives = 123/320 (38%), Gaps = 34/320 (10%)
Query: 1 MQTNFIIQLGNKSQVPILSFSATSPSLT-SIRSPYFFRGSLNDSSQAGAITAIIKAFGWR 59
+Q ++QL N +P +++SATS L+ YF R +D+ QA A+ I+K + W
Sbjct: 143 IQVQNLLQLFN---IPQIAYSATSMDLSDKTLFKYFMRVVPSDAQQARAMVDIVKRYNWT 199
Query: 60 EAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTR 117
++ + YGE + + D + + I A + +K L KL + + R
Sbjct: 200 YVSAVHTEGNYGESGMEAFKDMSAKEGISIAHSYKIYSNAGEQSFDKLLKKLTSHLPKAR 259
Query: 118 VFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIGVGPH 177
V + +GL + + + +DG + + +++ G I +
Sbjct: 260 VVACFCEGMTVRGLLMAMRRLGLAGE-FLLLGSDGWADRYDVTDGYQREAVGG-ITIKLQ 317
Query: 178 VPKTKALENFRVRWKRNFLQENPSIVDVELNIFGLL---------AYDAT--RALAEAVE 226
P K +++ ++ + NP + + F Y+ T +L
Sbjct: 318 SPDVKWFDDYYLKLRPETNHRNPWFQEFWQHRFQCRLEGFPQENSKYNKTCNSSLTLKTH 377
Query: 227 KAGITSFGFDKTNVSRNATDLEAFGISQ--------------NGPKLLQALSSTRFKGLT 272
+ GF + A L +S +G KLL++L T F G++
Sbjct: 378 HVQDSKMGFVINAIYSMAYGLHNMQMSLCPGYAGLCDAMKPIDGRKLLESLMKTNFTGVS 437
Query: 273 GDYIFVDGQLQSSA-FEIIN 291
GD I D S +EI+N
Sbjct: 438 GDTILFDENGDSPGRYEIMN 457
>pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO2|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO3|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO3|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO4|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO4|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO5|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO5|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO6|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO6|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO7|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
pdb|4IO7|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
Length = 248
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 347 LRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDG 406
LRIGV F+ NV ID + T +TGY +D+ + + ++ + P
Sbjct: 10 LRIGVIESVPFTIVANV-IDTSGRNTTKLTGYVLDLIEYLRDKMGFVADVQLAP------ 62
Query: 407 SSSGSYNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIV 456
+ SY LV + G++D +GDIT+ R V F+ +++ + +++
Sbjct: 63 -PNTSYTGLVLALANGDYDIAIGDITVTSARREIVAFSNSISDNSMRILM 111
>pdb|2F34|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F34|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F35|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F35|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F36|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2OJT|A Chain A, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2OJT|B Chain B, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2QS1|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS1|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS2|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS2|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS3|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS3|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS4|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
Length = 258
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFVPYGQPDGSS-SGSYNDLVYQVFLGEFDAVVGDITIVF 435
GYC+D+ K + L + VP G+ + G +N +V ++ D V +TI +
Sbjct: 34 GYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITY 93
Query: 436 NRSNYVDFTLPYTESGVSMI 455
R +DF+ P+ G+S++
Sbjct: 94 VREKVIDFSKPFMTLGISIL 113
>pdb|1TXF|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core In
Complex With Glutamate At 2.1 Angstrom Resolution
pdb|3C31|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C31|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C32|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C32|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C33|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C33|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C34|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C34|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C35|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C35|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C36|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
pdb|3C36|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
Length = 258
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFVPYGQPDGSS-SGSYNDLVYQVFLGEFDAVVGDITIVF 435
GYC+D+ K + L + VP G+ + G +N +V ++ D V +TI +
Sbjct: 34 GYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITY 93
Query: 436 NRSNYVDFTLPYTESGVSMI 455
R +DF+ P+ G+S++
Sbjct: 94 VREKVIDFSKPFMTLGISIL 113
>pdb|2WKY|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
pdb|2WKY|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
Length = 258
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFVPYGQPDGSS-SGSYNDLVYQVFLGEFDAVVGDITIVF 435
GYC+D+ K + L + VP G+ + G +N +V ++ D V +TI +
Sbjct: 34 GYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITY 93
Query: 436 NRSNYVDFTLPYTESGVSMI 455
R +DF+ P+ G+S++
Sbjct: 94 VREKVIDFSKPFMTLGISIL 113
>pdb|1YCJ|A Chain A, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1YCJ|B Chain B, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1VSO|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Antagonist (S)-Atpo At 1.85 A
Resolution
pdb|2PBW|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|2PBW|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|3GBA|A Chain A, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|B Chain B, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|C Chain C, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|D Chain D, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBB|A Chain A, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3GBB|B Chain B, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3S2V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|3S2V|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|4E0X|A Chain A, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4E0X|B Chain B, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4DLD|A Chain A, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
pdb|4DLD|B Chain B, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
Length = 257
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFVPYGQPDGSS-SGSYNDLVYQVFLGEFDAVVGDITIVF 435
GYC+D+ K + L + VP G+ + G +N +V ++ D V +TI +
Sbjct: 34 GYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITY 93
Query: 436 NRSNYVDFTLPYTESGVSMI 455
R +DF+ P+ G+S++
Sbjct: 94 VREKVIDFSKPFMTLGISIL 113
>pdb|2ZNS|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With
Glutamate
pdb|2ZNT|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Dysiherbaine
pdb|2ZNU|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Neodysiherbaine A
pdb|3FUZ|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FUZ|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FV1|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV1|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV2|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FV2|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FVG|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVG|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVK|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVK|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVO|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
pdb|3FVO|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
Length = 256
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFVPYGQPDGSS-SGSYNDLVYQVFLGEFDAVVGDITIVF 435
GYC+D+ K + L + VP G+ + G +N +V ++ D V +TI +
Sbjct: 33 GYCLDLLKELSNILGFIYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITY 92
Query: 436 NRSNYVDFTLPYTESGVSMI 455
R +DF+ P+ G+S++
Sbjct: 93 VREKVIDFSKPFMTLGISIL 112
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U92|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U93|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U93|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U94|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|C Chain C, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|D Chain D, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
Length = 257
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYC+D+ K + L ++ V YG D G +N +V ++ + D V +TI
Sbjct: 34 GYCIDLLKELAHILGFSYEIRLVEDGKYGAQD--DKGQWNGMVKELIDHKADLAVAPLTI 91
Query: 434 VFNRSNYVDFTLPYTESGVSMI 455
R +DF+ P+ GVS++
Sbjct: 92 THVREKAIDFSKPFMTLGVSIL 113
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 657 TAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPD 703
+ G+G P+ SP ++ AIL + E DK+ +++ W+ + S CP+
Sbjct: 212 SKGYGIGTPMGSPYRDKITIAILQLQEEDKLHIMKEKWW-RGSGCPE 257
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|3S9E|B Chain B, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|4E0W|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With Kainate
pdb|4G8N|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3
Ligand-Binding Domain In Complex With The Agonist G8m
Length = 258
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYC+D+ K + L ++ V YG D G +N +V ++ + D V +TI
Sbjct: 36 GYCIDLLKELAHILGFSYEIRLVEDGKYGAQD--DKGQWNGMVKELIDHKADLAVAPLTI 93
Query: 434 VFNRSNYVDFTLPYTESGVSMI 455
R +DF+ P+ GVS++
Sbjct: 94 THVREKAIDFSKPFMTLGVSIL 115
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 657 TAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCP 702
+ G+G P+ SP ++ AIL + E DK+ +++ W+ + S CP
Sbjct: 214 SKGYGIGTPMGSPYRDKITIAILQLQEEDKLHIMKEKWW-RGSGCP 258
>pdb|3TDJ|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TDJ|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TKD|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
pdb|3TKD|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
Length = 263
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
+ R +DF+ P+ G+S+++
Sbjct: 93 TYVREEVIDFSKPFMSLGISIMI 115
>pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB8|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB9|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
pdb|1LB9|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
Length = 263
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
+ R +DF+ P+ G+S+++
Sbjct: 93 TYVREEVIDFSKPFMSLGISIMI 115
>pdb|1P1W|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
pdb|1P1W|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
With The L483y And L650t Mutations And In Complex With
Ampa
Length = 263
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
+ R +DF+ P+ G+S+++
Sbjct: 93 TYVREEVIDFSKPFMSLGISIMI 115
>pdb|3T9X|B Chain B, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|D Chain D, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T9X|F Chain F, Glutamate Bound To A Double Cysteine Mutant (V484cE657C)
OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 31 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 89
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 90 TLCREEVIDFSKPFMSLGISIMI 112
>pdb|3FAT|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAT|C Chain C, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Ampa At 1.90a Resolution
pdb|3FAS|A Chain A, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
pdb|3FAS|B Chain B, X-Ray Structure Of Iglur4 Flip Ligand-Binding Core (S1s2)
In Complex With (S)-Glutamate At 1.40a Resolution
Length = 260
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFVP---YGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + VP YG D + +N +V ++ G+ + + +TI
Sbjct: 32 GYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTK-IWNGMVGELVYGKAEIAIAPLTI 90
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 91 TLVREEVIDFSKPFMSLGISIMI 113
>pdb|3EN3|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Kainate
pdb|3EPE|A Chain A, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
pdb|3EPE|B Chain B, Crystal Structure Of The Glur4 Ligand-Binding Domain In
Complex With Glutamate
Length = 257
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFVP---YGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + VP YG D + +N +V ++ G+ + + +TI
Sbjct: 30 GYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTK-IWNGMVGELVYGKAEIAIAPLTI 88
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 89 TLVREEVIDFSKPFMSLGISIMI 111
>pdb|3KEI|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KEI|B Chain B, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Glutamate
pdb|3KFM|A Chain A, Crystal Structure Of The Glua4 Ligand-Binding Domain L651v
Mutant In Complex With Kainate
Length = 257
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFVP---YGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + VP YG D + +N +V ++ G+ + + +TI
Sbjct: 30 GYCVDLASEIAKHIGIKYKIAIVPDGKYGARDADTK-IWNGMVGELVYGKAEIAIAPLTI 88
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 89 TLVREEVIDFSKPFMSLGISIMI 111
>pdb|1M5D|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Br-hibo At 1.73 A Resolution
pdb|1M5F|A Chain A, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|B Chain B, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|C Chain C, X-ray Structure Of The Glur2 Ligand Binding Core (s1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1SYI|A Chain A, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1SYI|B Chain B, X-Ray Structure Of The Y702f Mutant Of The Glur2 Ligand-
Binding Core (S1s2j) In Complex With (S)-Cpw399 At 2.1 A
Resolution.
pdb|1XHY|A Chain A, X-ray Structure Of The Y702f Mutant Of The Glur2
Ligand-binding Core (s1s2j) In Complex With Kainate At
1.85 A Resolution
Length = 263
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|2XX7|A Chain A, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|B Chain B, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|C Chain C, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution
Length = 291
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 63 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 121
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 122 TLVREEVIDFSKPFMSLGISIMI 144
>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4U|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
L-glutamate
pdb|2E4V|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4V|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With Dcg-Iv
pdb|2E4W|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4W|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3s-Acpd
pdb|2E4X|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4X|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
1s,3r-Acpd
pdb|2E4Y|A Chain A, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
pdb|2E4Y|B Chain B, Crystal Structure Of The Extracellular Region Of The Group
Ii Metabotropic Glutamate Receptor Complexed With
2r,4r-Apdc
Length = 555
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 23/150 (15%)
Query: 14 QVPILSFSATSPSLTSI-RSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGE 72
Q+P +S+++TS L+ R YF R D QA A+ I++ F W + + YGE
Sbjct: 141 QIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGE 200
Query: 73 EMIPSLTDALQAIDTRVPYRSVISPLATD----------DQIEKELYKLFTMQTRVFILH 122
++A + R++ A D + +EL L RV +L
Sbjct: 201 T-------GIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIREL--LQKPNARVVVLF 251
Query: 123 MLPSLGSRIFEKANEIGLMNKGCVWIMTDG 152
M + AN + N W+ +DG
Sbjct: 252 MRSDDSRELIAAANRV---NASFTWVASDG 278
>pdb|3RNN|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
pdb|3RNN|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain With
Symmetric Sulfonamide Containing Potentiator
Length = 292
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 47 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 105
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 106 TLVREEVIDFSKPFMSLGISIMI 128
>pdb|2I3W|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
pdb|2I3W|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of S729c Mutant
Length = 259
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 32 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 90
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 91 TLVREEVIDFSKPFMSLGISIMI 113
>pdb|3RN8|A Chain A, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|B Chain B, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
pdb|3RN8|C Chain C, Crystal Structure Of Iglur2 Ligand Binding Domain And
Symmetrical Carboxyl Containing Potentiator
Length = 280
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 35 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 93
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 94 TLVREEVIDFSKPFMSLGISIMI 116
>pdb|3R7X|A Chain A, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3R7X|B Chain B, Crystal Structure Analysis Of A Quinazolinedione
Sulfonamide Bound To Human Glur2: A Novel Class Of
Competitive Ampa Receptor Antagonists With Oral Activity
pdb|3UA8|A Chain A, Crystal Structure Analysis Of A 6-Amino Quinazolinedione
Sulfonamide Bound To Human Glur2
Length = 263
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|3IJO|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJX|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|D Chain D, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IK6|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IL1|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3ILT|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILU|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3LSF|B Chain B, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|E Chain E, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|H Chain H, Piracetam Bound To The Ligand Binding Domain Of Glua2
Length = 258
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 31 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 89
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 90 TLVREEVIDFSKPFMSLGISIMI 112
>pdb|3H03|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|D Chain D, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H03|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Ubp277
pdb|3H06|G Chain G, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|E Chain E, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|H Chain H, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|J Chain J, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|L Chain L, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|N Chain N, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3H06|P Chain P, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To The Willardiine Antagonist,
Ubp282
pdb|3LSL|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|D Chain D, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3LSL|G Chain G, Piracetam Bound To The Ligand Binding Domain Of Glua2
(Flop Form)
pdb|3M3L|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|D Chain D, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3M3L|G Chain G, Pepa Bound To The Ligand Binding Domain Of Glua2 (Flop
Form)
pdb|3RTF|B Chain B, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|D Chain D, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTF|F Chain F, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|B Chain B, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|D Chain D, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|3RTW|F Chain F, Nitrowillardiine Bound To The Ligand Binding Domain Of
Glua2
pdb|4GXS|B Chain B, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
pdb|4GXS|D Chain D, Ligand Binding Domain Of Glua2 (AmpaGLUTAMATE RECEPTOR)
BOUND TO (-)- Kaitocephalin
Length = 258
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 31 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 89
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 90 TLVREEVIDFSKPFMSLGISIMI 112
>pdb|1MQD|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|1MQD|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.46 A Resolution.
Crystallization In The Presence Of Lithium Sulfate.
pdb|3B7D|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|G Chain G, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
pdb|3B7D|H Chain H, Crystal Structure Of The Glur2 Ligand Binding Core
(Hs1s2j) In Complex With Cnqx At 2.5 A Resolution
Length = 261
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|3PD8|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
pdb|3PD8|C Chain C, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (S)-7-Hpca At 2.5 A Resolution
Length = 261
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 33 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 91
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 92 TLVREEVIDFSKPFMSLGISIMI 114
>pdb|3DP6|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|B Chain B, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
pdb|3DP6|C Chain C, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur2 Bound To Glutamate
Length = 279
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 50 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 108
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 109 TLVREEVIDFSKPFMSLGISIMI 131
>pdb|2I3V|A Chain A, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|B Chain B, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|C Chain C, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
pdb|2I3V|D Chain D, Measurement Of Conformational Changes Accompanying
Desensitization In An Ionotropic Glutamate Receptor:
Structure Of G725c Mutant
Length = 259
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 32 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 90
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 91 TLVREEVIDFSKPFMSLGISIMI 113
>pdb|2UXA|A Chain A, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|B Chain B, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|C Chain C, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED
Length = 261
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 33 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 91
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 92 TLVREEVIDFSKPFMSLGISIMI 114
>pdb|3B6W|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
pdb|3B6W|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686s Mutant In Complex With Glutamate At 1.7 Resolution
Length = 263
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|1FW0|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Kainate At 2.0 A Resolution
pdb|1FTJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTJ|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTL|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTL|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTM|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTM|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTO|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1FTO|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1M5B|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5C|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Br-Hibo At 1.65 A Resolution
pdb|1M5E|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1MM6|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM6|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Quisqualate In A Non Zinc Crystal Form
At 2.15 Angstroms Resolution
pdb|1MM7|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1MM7|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate In A Zinc Crystal Form At
1.65 Angstroms Resolution
pdb|1N0T|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1N0T|D Chain D, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With The Antagonist (S)-Atpo At 2.1 A
Resolution.
pdb|1NNK|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.85 A Resolution.
Crystallization With Zinc Ions.
pdb|1NNP|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1NNP|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Atpa At 1.9 A Resolution.
Crystallization Without Zinc Ions.
pdb|1MS7|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|B Chain B, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MS7|C Chain C, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Des-Me-Ampa At 1.97 A Resolution,
Crystallization In The Presence Of Zinc Acetate
pdb|1MXU|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXU|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine (Control For The
Crystal Titration Experiments)
pdb|1MXV|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXV|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Mm Brw)
pdb|1MXW|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXW|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
1 Mm Brw)
pdb|1MXX|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXX|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Um Brw)
pdb|1MXY|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXY|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Um Brw)
pdb|1MXZ|A Chain A, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|B Chain B, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MXZ|C Chain C, Crystal Titration Experiments (ampa Co-crystals Soaked In
1 Um Brw)
pdb|1MY0|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY0|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
100 Nm Brw)
pdb|1MY1|A Chain A, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|B Chain B, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY1|C Chain C, Crystal Titration Experiments (Ampa Co-Crystals Soaked In
10 Nm Brw)
pdb|1MY2|A Chain A, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|B Chain B, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY2|C Chain C, Crystal Titration Experiment (Ampa Complex Control)
pdb|1MY3|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY3|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Bromo-Willardiine In The Zn Crystal
Form
pdb|1MY4|A Chain A, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|B Chain B, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MY4|C Chain C, Crystal Structure Of Glutamate Receptor Ligand-Binding
Core In Complex With Iodo-Willardiine In The Zn Crystal
Form
pdb|1MQG|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQG|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Iodo-Willardiine At 2.15 Angstroms
Resolution
pdb|1MQI|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (s1s2j)
In Complex With Fluoro-willardiine At 1.35 Angstroms
Resolution
pdb|1MQJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Willardiine At 1.65 Angstroms Resolution
pdb|1SYH|A Chain A, X-ray Structure Of The Glur2 Ligand-binding Core (s1s2j)
In Complex With (s)-cpw399 At 1.85 A Resolution.
pdb|1WVJ|A Chain A, Exploring The Glur2 Ligand-Binding Core In Complex With
The Bicyclic Ampa Analogue (S)-4-Ahcp
pdb|2AIX|A Chain A, X-Ray Structure Of The Glur2 Ligand-Binding Core (S1s2j)
In Complex With (S)-Thio-Atpa At 2.2 A Resolution.
pdb|2AL4|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|E Chain E, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL4|F Chain F, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Quisqualate And Cx614.
pdb|2AL5|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2AL5|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fluoro-Willardiine And Aniracetam
pdb|2CMO|A Chain A, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|2P2A|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|2P2A|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Bn-Tet-Ampa At 2.26a Resolution
pdb|3BKI|P Chain P, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BKI|D Chain D, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Fqx At 1.87 Angstroms
pdb|3BFU|A Chain A, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|B Chain B, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|C Chain C, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFU|D Chain D, Structure Of The Ligand-Binding Core Of Glur2 In Complex
With The Agonist (R)-Tdpa At 1.95 A Resolution
pdb|3BFT|A Chain A, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|B Chain B, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|3BFT|C Chain C, Structure Of The Ligand-binding Core Of Glur2 In Complex
With The Agonist (s)-tdpa At 2.25 A Resolution
pdb|2CMO|B Chain B, The Structure Of A Mixed Glur2 Ligand-Binding Core Dimer
In Complex With (S)-Glutamate And The Antagonist
(S)-Ns1209
pdb|3TZA|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|3TZA|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-
Chloro-4-Nitrophenyl)propionic Acid At 1.9a Resolution
pdb|4G8M|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
pdb|4G8M|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j) In Complex With The Agonist Cbg-Iv At 2.05a
Resolution
Length = 263
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|2XHD|A Chain A, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
pdb|2XHD|B Chain B, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
Length = 263
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|3PD9|A Chain A, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
pdb|3PD9|B Chain B, X-Ray Structure Of The Ligand-Binding Core Of Glua2 In
Complex With (R)-5-Hpca At 2.1 A Resolution
Length = 260
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 32 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 90
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 91 TLVREEVIDFSKPFMSLGISIMI 113
>pdb|3B6T|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
T686a Mutant In Complex With Quisqualate At 2.1
Resolution
pdb|3B6Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
Mutant T686a In Complex With Glutamate At 2.0 Resolution
Length = 263
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|B Chain B, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|C Chain C, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|3H6T|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|C Chain C, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6U|A Chain A, Crystal Structure Of The Iglur2 Ligand-binding Core
(s1s2j-n754s) In Complex With Glutamate And Ns1493 At
1.85 A Resolution
pdb|3H6V|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6V|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6W|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3H6W|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3KGC|A Chain A, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3KGC|B Chain B, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3BBR|A Chain A, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|3BBR|B Chain B, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|2XX9|A Chain A, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|B Chain B, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|C Chain C, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XXH|A Chain A, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|B Chain B, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|C Chain C, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXI|A Chain A, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|B Chain B, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|C Chain C, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XX8|A Chain A, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|B Chain B, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|C Chain C, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution
Length = 263
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|3O28|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|1P1N|A Chain A, Glur2 Ligand Binding Core (S1s2j) Mutant L650t In Complex
With Kainate
pdb|1P1O|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
Mutant L650t In Complex With Quisqualate
pdb|1P1Q|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1Q|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
L650t Mutant In Complex With Ampa
pdb|1P1U|A Chain A, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
pdb|1P1U|B Chain B, Crystal Structure Of The Glur2 Ligand-Binding Core (S1s2j)
L650t Mutant In Complex With Ampa (Ammonium Sulfate
Crystal Form)
Length = 263
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Domain
Mutant (s1s2j-n754d) In Complex With Kainate At 2.1 A
Resolution
Length = 263
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|2RCA|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RCB|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCB|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCA|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 292
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 357 FSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGS----SSGSY 412
F+ VN ++ P+T GYC+D+ + + ++L A+DF Y DG G +
Sbjct: 50 FAALVNGSV-PRTLR-RCCYGYCIDLLERLAEDL----AFDFELYIVGDGKYGALRDGRW 103
Query: 413 NDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSK 462
LV + G V +I RS VDFT P+ + + ++V + ++
Sbjct: 104 TGLVGDLLAGRAHMAVTSFSINSARSQVVDFTSPFFSTSLGIMVRTRGTE 153
>pdb|3O29|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O2A|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6G|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6H|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6I|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMV|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMW|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMX|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|4FAT|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|1MQH|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Bromo-Willardiine At 1.8 Angstroms
Resolution
Length = 263
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|1GR2|A Chain A, Structure Of A Glutamate Receptor Ligand Binding Core
(Glur2) Complexed With Kainate
pdb|1FTK|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2i)
In Complex With Kainate At 1.6 A Resolution
Length = 279
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 46 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTK-IWNGMVGELVYGKADIAIAPLTI 104
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 105 TLVREEVIDFSKPFMSLGISIMI 127
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
pdb|3G3K|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
Length = 259
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYC+D+ + + L + V YG D +G +N +V ++ + D V + I
Sbjct: 34 GYCIDLLRELSTHLGFTYEIRLVEDGKYGAQD-DVNGQWNGMVRELIDHKADLAVAPLAI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMI 455
+ R +DF+ P+ G+S++
Sbjct: 93 TYVREEVIDFSKPFMTLGISIL 114
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
pdb|3G3J|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
Length = 259
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYC+D+ + + L + V YG D +G +N +V ++ + D V + I
Sbjct: 34 GYCIDLLRELSTHLGFTYEIRLVEDGKYGAQD-DVNGQWNGMVRELIDHKADLAVAPLAI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMI 455
+ R +DF+ P+ G+S++
Sbjct: 93 TYVREEVIDFSKPFMTLGISIL 114
>pdb|3T93|B Chain B, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|D Chain D, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T93|F Chain F, Glutamate Bound To A Double Cysteine Mutant (A452cS652C)
OF THE Ligand Binding Domain Of Glua2
pdb|3T96|B Chain B, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|D Chain D, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T96|F Chain F, Iodowillardiine Bound To A Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9H|B Chain B, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|D Chain D, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9H|F Chain F, Kainate Bound To A Double Cysteine Mutant (A452cS652C) OF
THE LIGAND Binding Domain Of Glua2
pdb|3T9U|A Chain A, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|B Chain B, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9U|C Chain C, Cnqx Bound To An Oxidized Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|A Chain A, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
pdb|3T9V|B Chain B, Cnqx Bound To A Reduced Double Cysteine Mutant
(A452cS652C) OF THE Ligand Binding Domain Of Glua2
Length = 258
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 31 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGCRDADTK-IWNGMVGELVYGKADIAIAPLTI 89
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 90 TLVREEVIDFSKPFMSLGISIMI 112
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
pdb|3G3I|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
Length = 259
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYC+D+ + + L + V YG D +G +N +V ++ + D V + I
Sbjct: 34 GYCIDLLRELSTHLGFTYEIRLVEDGKYGAQD-DVNGQWNGMVRELIDHKADLAVAPLAI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMI 455
+ R +DF+ P+ G+S++
Sbjct: 93 TYVREEVIDFSKPFMTLGISIL 114
>pdb|3QXM|A Chain A, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
pdb|3QXM|B Chain B, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
Length = 258
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYC+D+ + + L + V YG D ++G +N +V ++ + D V + I
Sbjct: 33 GYCIDLLRELSTILGFTYEIRLVEDGKYGAQD-DANGQWNGMVRELIDHKADLAVAPLAI 91
Query: 434 VFNRSNYVDFTLPYTESGVSMI 455
+ R +DF+ P+ G+S++
Sbjct: 92 TYVREKVIDFSKPFMTLGISIL 113
>pdb|2GFE|A Chain A, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|B Chain B, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
pdb|2GFE|C Chain C, Crystal Structure Of The Glur2 A476e S673d Ligand Binding
Core Mutant At 1.54 Angstroms Resolution
Length = 262
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G+ D + +TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKYGARD-EDTKIWNGMVGELVYGKADIAIAPLTI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 93 TLVREEVIDFSKPFMSLGISIMI 115
>pdb|3O21|A Chain A, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|B Chain B, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|C Chain C, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3O21|D Chain D, High Resolution Structure Of Glua3 N-Terminal Domain (Ntd)
pdb|3P3W|A Chain A, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|B Chain B, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|C Chain C, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
pdb|3P3W|D Chain D, Structure Of A Dimeric Glua3 N-Terminal Domain (Ntd) At
4.2 A Resolution
Length = 389
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/264 (20%), Positives = 115/264 (43%), Gaps = 17/264 (6%)
Query: 47 GAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEK 106
GAI +++ + W + V +Y D + G ++ ++ +A + +V RSV + + +
Sbjct: 119 GAILSLLSYYKWEKFVYLY-DTERGFSVLQAIMEAAVQNNWQVTARSV-GNIKDVQEFRR 176
Query: 107 ELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTD-GMTNLLRTLEPSVI 165
+ ++ Q + +++ + I E+ +G ++G +++ + G T++L LE V+
Sbjct: 177 IIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDIL--LE-RVM 233
Query: 166 DSMQGVIGVGPHVPKTKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAV 225
+ G + ++ F RW R +E P + L L +DA +AEA
Sbjct: 234 HGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAF 293
Query: 226 EKAGITSFGFDKTNVSRNATDLEAFGIS----QNGPKLLQALSSTRFKGLTGDYIF-VDG 280
+ +VSR + + G + +AL + +G+TG+ F G
Sbjct: 294 R-----YLRRQRVDVSRRGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYG 348
Query: 281 QLQSSAFEIINVN-NGARGVGFWT 303
+ + ++ + +G+R G+W
Sbjct: 349 RRTNYTIDVYEMKVSGSRKAGYWN 372
>pdb|2ANJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y450w) Mutant In Complex With The Partial Agonist Kainic
Acid At 2.1 A Resolution
Length = 263
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGS--YNDLVYQVFLGEFDAVVGDITIV 434
GYCVD+ + + + V G+ + + +N +V ++ G+ D + +TI
Sbjct: 34 GYCVDLAAEIAKHCGFKYKLTIVGDGKWGARDADTKIWNGMVGELVYGKADIAIAPLTIT 93
Query: 435 FNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 94 LVREEVIDFSKPFMSLGISIMI 115
>pdb|2XXW|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXW|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXX|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXY|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYC+D+ + + L + V YG D +G +N +V ++ + D V + I
Sbjct: 34 GYCIDLLRELSTILGFTYEIRLVEDGKYGAQD-DVNGQWNGMVRELIDHKADLAVAPLAI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMI 455
+ R +DF+ P+ G+S++
Sbjct: 93 TYVREKVIDFSKPFMTLGISIL 114
>pdb|2XXU|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXU|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXV|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
pdb|2XXV|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYC+D+ + + L + V YG D +G +N +V ++ + D V + I
Sbjct: 34 GYCIDLLRELSTILGFTYEIRLVEDGKYGAQD-DVNGQWNGMVRELIDHKADLAVAPLAI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMI 455
+ R +DF+ P+ G+S++
Sbjct: 93 TYVREKVIDFSKPFMTLGISIL 114
>pdb|2XXR|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXR|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXT|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
pdb|2XXT|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
Length = 261
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYC+D+ + + L + V YG D +G +N +V ++ + D V + I
Sbjct: 34 GYCIDLLRELSTILGFTYEIRLVEDGKYGAQD-DVNGQWNGMVRELIDHKADLAVAPLAI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMI 455
+ R +DF+ P+ G+S++
Sbjct: 93 TYVREKVIDFSKPFMTLGISIL 114
>pdb|1YAE|A Chain A, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|B Chain B, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|C Chain C, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|D Chain D, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|E Chain E, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|F Chain F, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
Length = 312
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYC+D+ + + L + V YG D +G +N +V ++ + D V + I
Sbjct: 43 GYCIDLLRELSTILGFTYEIRLVEDGKYGAQD-DVNGQWNGMVRELIDHKADLAVAPLAI 101
Query: 434 VFNRSNYVDFTLPYTESGVSMI 455
+ R +DF+ P+ G+S++
Sbjct: 102 TYVREKVIDFSKPFMTLGISIL 123
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 657 TAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPDASTVVSSRSLGLN 716
+ G+G P+ SP ++ AIL + E K+ +++ W++ + CP+ + +S +LG+
Sbjct: 248 SKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGN-GCPEEESKEAS-ALGVQ 305
Query: 717 S 717
+
Sbjct: 306 N 306
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
pdb|3G3H|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
Length = 259
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYC+D+ + + L + V YG D +G +N +V ++ + D V + I
Sbjct: 34 GYCIDLLRELSTILGFTYEIRLVEDGKYGAQD-DVNGQWNGMVRELIDHKADLAVAPLAI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMI 455
+ R +DF+ P+ G+S++
Sbjct: 93 TYVREKVIDFSKPFMTLGISIL 114
>pdb|1S50|A Chain A, X-Ray Structure Of The Glur6 Ligand Binding Core (S1s2a)
In Complex With Glutamate At 1.65 A Resolution
pdb|1S7Y|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S7Y|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S9T|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1S9T|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1SD3|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1SD3|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1TT1|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|1TT1|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|3G3F|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
pdb|3G3F|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
Length = 259
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYC+D+ + + L + V YG D +G +N +V ++ + D V + I
Sbjct: 34 GYCIDLLRELSTILGFTYEIRLVEDGKYGAQD-DVNGQWNGMVRELIDHKADLAVAPLAI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMI 455
+ R +DF+ P+ G+S++
Sbjct: 93 TYVREKVIDFSKPFMTLGISIL 114
>pdb|3G3G|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
pdb|3G3G|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
Length = 259
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYC+D+ + + L + V YG D +G +N +V ++ + D V + I
Sbjct: 34 GYCIDLLRELSTILGFTYEIRLVEDGKYGAQD-DVNGQWNGMVRELIDHKADLAVAPLAI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMI 455
+ R +DF+ P+ G+S++
Sbjct: 93 TYVREKVIDFSKPFMTLGISIL 114
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|C Chain C, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
Length = 259
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYC+D+ + + L + V YG D +G +N +V ++ + D V + I
Sbjct: 34 GYCIDLLRELSTILGFTYEIRLVEDGKYGAQD-DVNGQWNGMVRELIDHKADLAVAPLAI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMI 455
+ R +DF+ P+ G+S++
Sbjct: 93 TYVREEVIDFSKPFMTLGISIL 114
>pdb|4F2O|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F2Q|A Chain A, Quisqualate Bound To The D655a Mutant Of The Ligand
Binding Domain Of Glua3
pdb|4F31|B Chain B, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F31|D Chain D, Kainate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
pdb|4F3B|A Chain A, Glutamate Bound To The D655a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G D V +TI
Sbjct: 31 GYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETK-IWNGMVGELVYGRADIAVAPLTI 89
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 90 TLVREEVIDFSKPFMSLGISIMI 112
>pdb|3LSW|A Chain A, Aniracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3LSX|A Chain A, Piracetam Bound To The Ligand Binding Domain Of Glua3
pdb|3RT6|B Chain B, Fluorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|3RT8|A Chain A, Chlorowillardiine Bound To The Ligand Binding Domain Of
Glua3
pdb|4F29|A Chain A, Quisqualate Bound To The Ligand Binding Domain Of Glua3i
pdb|4F39|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3
pdb|4F3G|A Chain A, Kainate Bound To The Ligand Binding Domain Of Glua3i
Length = 258
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G D V +TI
Sbjct: 31 GYCVDLAYEIAKHVRIKYKLSIVGDGKYGARD-PETKIWNGMVGELVYGRADIAVAPLTI 89
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 90 TLVREEVIDFSKPFMSLGISIMI 112
>pdb|3DP4|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Ampa
pdb|3DLN|A Chain A, Crystal Structure Of The Binding Domain Of The Ampa
Subunit Glur3 Bound To Glutamate
Length = 278
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G D V +TI
Sbjct: 50 GYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETK-IWNGMVGELVYGRADIAVAPLTI 108
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 109 TLVREEVIDFSKPFMSLGISIMI 131
>pdb|4F22|A Chain A, Kainate Bound To The K660a Mutant Of The Ligand Binding
Domain Of Glua3
Length = 258
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G D V +TI
Sbjct: 31 GYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETK-IWNGMVGELVYGRADIAVAPLTI 89
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 90 TLVREEVIDFSKPFMSLGISIMI 112
>pdb|3M3F|A Chain A, Pepa Bound To The Ligand Binding Domain Of Glua3 (Flop
Form)
pdb|3M3K|A Chain A, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|C Chain C, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|3M3K|E Chain E, Ligand Binding Domain (S1s2) Of Glua3 (Flop)
pdb|4F1Y|A Chain A, Cnqx Bound To The Ligand Binding Domain Of Glua3
pdb|4F1Y|C Chain C, Cnqx Bound To The Ligand Binding Domain Of Glua3
Length = 258
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYCVD+ + + + V YG D + +N +V ++ G D V +TI
Sbjct: 31 GYCVDLAYEIAKHVRIKYKLSIVGDGKYGARDPETK-IWNGMVGELVYGRADIAVAPLTI 89
Query: 434 VFNRSNYVDFTLPYTESGVSMIV 456
R +DF+ P+ G+S+++
Sbjct: 90 TLVREEVIDFSKPFMSLGISIMI 112
>pdb|2V3U|A Chain A, Structure Of The Ligand-binding Core Of The Ionotropic
Glutamate Receptor-like Glurdelta2 In Complex With D-
Serine
Length = 265
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 371 EPTSVTGYCVDVFKAVIQELPYAVAYDFVP---YGQPDGSSSGSYNDLVYQVFLGEFDAV 427
+P G+ +DV A+ L + P YG P G++N LV ++ D
Sbjct: 25 KPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSP--QEDGTWNGLVGELVFKRADIG 82
Query: 428 VGDITIVFNRSNYVDFTLPYTESGVSMIV 456
+ +TI +R N VDFT Y + V +++
Sbjct: 83 ISALTITPDRENVVDFTTRYMDYSVGVLL 111
>pdb|2V3T|A Chain A, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
pdb|2V3T|B Chain B, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
Length = 265
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 371 EPTSVTGYCVDVFKAVIQELPYAVAYDFVP---YGQPDGSSSGSYNDLVYQVFLGEFDAV 427
+P G+ +DV A+ L + P YG P G++N LV ++ D
Sbjct: 25 KPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSP--QEDGTWNGLVGELVFKRADIG 82
Query: 428 VGDITIVFNRSNYVDFTLPYTESGVSMIV 456
+ +TI +R N VDFT Y + V +++
Sbjct: 83 ISALTITPDRENVVDFTTRYXDYSVGVLL 111
>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3
Precursor In Presence Of Ly341495 Antagonist
Length = 479
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 13/145 (8%)
Query: 14 QVPILSFSATSPSLT-SIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGE 72
Q+P +S+++TS L+ R YF R D QA A+ I++ F W + + YGE
Sbjct: 140 QIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGE 199
Query: 73 EMIPSLTDALQAIDTRVPY-----RSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSL 127
I + + + + RS I + D + +EL L RV +L M
Sbjct: 200 TGIEAFEQEARLRNISIATAEKVGRSNIRK--SYDSVIREL--LQKPNARVVVLFMRSDD 255
Query: 128 GSRIFEKANEIGLMNKGCVWIMTDG 152
+ A+ N W+ +DG
Sbjct: 256 SRELIAAASR---ANASFTWVASDG 277
>pdb|3SAJ|A Chain A, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|B Chain B, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|C Chain C, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
pdb|3SAJ|D Chain D, Crystal Structure Of Glutamate Receptor Glua1 Amino
Terminal Domain
Length = 384
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 17/102 (16%)
Query: 213 LAYDATRALAEAVEKAGITSFGFDKTNVSR--NATDLEA-----FGISQNGPKLLQALSS 265
L YD + +AEA + S + ++SR NA D A +G G + +AL
Sbjct: 278 LTYDGVKVMAEAFQ-----SLRRQRIDISRRGNAGDCLANPAVPWG---QGIDIQRALQQ 329
Query: 266 TRFKGLTGDYIFVD-GQLQSSAFEIINV-NNGARGVGFWTPE 305
RF+GLTG+ F + G+ + +I + ++G R +G+W +
Sbjct: 330 VRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNED 371
>pdb|2I0C|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
pdb|2I0C|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
Length = 259
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFV---PYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITI 433
GYC+D+ + + L + V YG D +G +N +V ++ + D V + I
Sbjct: 34 GYCIDLLRELSTILGFTYEIRLVEDGKYGAQD-DVNGQWNGMVRELIDHKADLAVAPLAI 92
Query: 434 VFNRSNYVDFTLPYTESGVSMI 455
R +DF+ P+ G+S++
Sbjct: 93 TCVREKVIDFSKPFMTLGISIL 114
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 1 MQTNFIIQLGNKSQVPILSFSATSPSLTS-IRSPYFFRGSLNDSSQAGAITAIIKAFGWR 59
+Q ++QL + +P +++SATS L+ YF R +D+ QA A+ I+K + W
Sbjct: 137 IQVQNLLQLFD---IPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWT 193
Query: 60 EAVPIYVDNQYGE 72
++ + YGE
Sbjct: 194 YVSAVHTEGNYGE 206
>pdb|3TQL|A Chain A, Structure Of The Amino Acid Abc Transporter, Periplasmic
Amino Acid- Binding Protein From Coxiella Burnetii
Length = 227
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 375 VTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIV 434
V G+ D+ KAV ++ P+ + L+ + LG+FDA+ G I
Sbjct: 24 VEGFGADIVKAVCKQXQAVCTISNQPW-----------DSLIPSLKLGKFDALFGGXNIT 72
Query: 435 FNRSNYVDFTLPYTESGVSMI 455
R VDFT PY + VS I
Sbjct: 73 TARQKEVDFTDPYYTNSVSFI 93
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 1 MQTNFIIQLGNKSQVPILSFSATSPSLTS-IRSPYFFRGSLNDSSQAGAITAIIKAFGWR 59
+Q ++QL + +P +++SATS L+ YF R +D+ QA A+ I+K + W
Sbjct: 142 IQVQNLLQLFD---IPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWT 198
Query: 60 EAVPIYVDNQYGE 72
++ + YGE
Sbjct: 199 YVSAVHTEGNYGE 211
>pdb|2RC7|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RC8|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC8|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With D- Serine At 1.45 Angstrom Resolution
pdb|2RC9|A Chain A, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC9|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Acpc At 1.96 Angstrom Resolution
pdb|2RC7|B Chain B, Crystal Structure Of The Nr3a Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 294
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 42/86 (48%)
Query: 377 GYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFN 436
GYC+D+ + + +++ + V G+ +G + LV + G + V +I
Sbjct: 70 GYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTA 129
Query: 437 RSNYVDFTLPYTESGVSMIVPIKDSK 462
RS +DFT P+ + + ++V + ++
Sbjct: 130 RSQVIDFTSPFFSTSLGILVRTRGTE 155
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 647 KYAMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFK 696
K + F G+G P +SPL ++S+ I M + D W+K
Sbjct: 239 KLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWYK 288
>pdb|3Q41|A Chain A, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|B Chain B, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
pdb|3Q41|C Chain C, Crystal Structure Of The Glun1 N-Terminal Domain (Ntd)
Length = 384
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 70/333 (21%), Positives = 127/333 (38%), Gaps = 59/333 (17%)
Query: 14 QVPILSFSATSPSLTSIRSPY--FFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYG 71
++P+L + T S+ S +S + F R S Q+ +++ + W + + D+ G
Sbjct: 95 RIPVLGLT-TRMSIYSDKSIHLSFLRTVPPYSHQSSVWFEMMRVYNWNHIILLVSDDHEG 153
Query: 72 EEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRI 131
L L+ +++ P + + L + ++ RV IL + +
Sbjct: 154 RAAQKRLETLLEERESKAEKVLQFDPGTKN--VTALLMEARELEARVIILSASEDDAATV 211
Query: 132 FEKANEIGLMNKGCVWIMTDGMT--NLLRTLEPSVIDSMQGVIGVGPHVPKTKALENFRV 189
+ A + + G VW++ + N LR + G+IG+ L N +
Sbjct: 212 YRAAAMLNMTGSGYVWLVGEREISGNALRY-------APDGIIGL--------QLINGK- 255
Query: 190 RWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKTNVSRNATDLEA 249
E+ I D G++A +A+ E +EK IT D T+
Sbjct: 256 -------NESAHISDA----VGVVA----QAVHELLEKENIT----DPPRGCVGNTN--- 293
Query: 250 FGISQNGPKLLQALSSTRFK-GLTGDYIF-VDGQLQSSAFEIINVNNGARGVGFWTPEKG 307
I + GP + L S+++ G+TG F DG + + + I+N+ N K
Sbjct: 294 --IWKTGPLFKRVLMSSKYADGVTGRVEFNEDGDRKFANYSIMNLQN----------RKL 341
Query: 308 XXXXXXXXXXXXXXXXPIIWPGDSTSDPKGWEV 340
IIWPG T P+G++V
Sbjct: 342 VQVGIYNGTHVIPNDRKIIWPGGETEKPRGYQV 374
>pdb|2Q2C|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|B Chain B, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|C Chain C, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|D Chain D, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2PVU|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2A|A Chain A, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|B Chain B, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|C Chain C, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|D Chain D, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
Length = 272
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 623 VNGGIAAAFDEIPYMKLLIGQYCSKYAMI--EPK-FKTAGFGFVFPLHSPLVHDVSKAIL 679
+NGG+ A + + +K + +PK F + +G +FP +S L V +A+
Sbjct: 186 LNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNSELKAKVDEALK 245
Query: 680 NVTEGDKMKEIEDAWFKK 697
NV K EI WF K
Sbjct: 246 NVINSGKYTEIYKKWFGK 263
>pdb|2Y7I|A Chain A, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351.
pdb|2Y7I|B Chain B, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351
Length = 229
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 12/82 (14%)
Query: 375 VTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIV 434
+ G+ +DV AV +E+ ++ ++ S++ L+ + +FDAV+ + +
Sbjct: 28 IVGFDIDVANAVCKEMQAECSF-----------TNQSFDSLIPSLRFKKFDAVIAGMDMT 76
Query: 435 FNRSNYVDFTLPYTESGVSMIV 456
R V F+ PY E G+S +V
Sbjct: 77 PKREQQVSFSQPYYE-GLSAVV 97
>pdb|4H5F|A Chain A, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|B Chain B, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|C Chain C, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|D Chain D, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5G|A Chain A, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 2
pdb|4H5G|B Chain B, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 2
Length = 243
Score = 33.1 bits (74), Expect = 0.62, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 15/99 (15%)
Query: 365 IDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEF 424
+D K Q V G +D+ +A+ EL V + + S S+++++ + G+
Sbjct: 31 VDGKNQ----VVGADIDMAQAIADEL--GVKLEIL---------SMSFDNVLTSLQTGKA 75
Query: 425 DAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKK 463
D V I+ R DF++PY E+ +S +V D +K
Sbjct: 76 DLAVAGISATDERKEVFDFSIPYYENKISFLVHKADVEK 114
>pdb|1IIT|A Chain A, Glur0 Ligand Binding Core Complex With L-Serine
pdb|1IIW|A Chain A, Glur0 Ligand Binding Core: Closed-Cleft Ligand-Free
Structure
Length = 232
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 376 TGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVF 435
TG +DV++AV + + Y + + S+G + V GE D ++G I++
Sbjct: 28 TGISLDVWRAVAESQKWNSEYV-----RQNSISAG-----ITAVAEGELDILIGPISVTP 77
Query: 436 NRSNY--VDFTLPYTESGVSMIVP 457
R+ + FT PY SG+ +++P
Sbjct: 78 ERAAIEGITFTQPYFSSGIGLLIP 101
>pdb|1II5|A Chain A, Crystal Structure Of The Glur0 Ligand Binding Core Complex
With L- Glutamate
Length = 233
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 376 TGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVF 435
TG +DV++AV + + Y + + S+G + V GE D ++G I++
Sbjct: 28 TGISLDVWRAVAESQKWNSEYV-----RQNSISAG-----ITAVAEGELDILIGPISVTP 77
Query: 436 NRSNY--VDFTLPYTESGVSMIVP 457
R+ + FT PY SG+ +++P
Sbjct: 78 ERAAIEGITFTQPYFSSGIGLLIP 101
>pdb|2PYY|A Chain A, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|C Chain C, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|B Chain B, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
Length = 228
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 655 FKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSC 701
+ +G + P +SP +++A+LN+ E + + D WF +S
Sbjct: 181 LREESYGIILPNNSPYRKPINQALLNLKENGTYQSLYDKWFDPKNSL 227
>pdb|3QEL|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEL|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With
Ifenprodil
pdb|3QEM|B Chain B, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
pdb|3QEM|D Chain D, Crystal Structure Of Amino Terminal Domains Of The Nmda
Receptor Subunit Glun1 And Glun2b In Complex With Ro
25-6981
Length = 364
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 101 DDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 149
D +I+ +L KL Q+ + +L+ + IFE AN +GL G WI+
Sbjct: 183 DSKIQNQLKKL---QSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIV 228
>pdb|3JPW|A Chain A, Crystal Structure Of Amino Terminal Domain Of The Nmda
Receptor Subunit Nr2b
pdb|3JPY|A Chain A, Crystal Structure Of The Zinc-Bound Amino Terminal Domain
Of The Nmda Receptor Subunit Nr2b
Length = 363
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 101 DDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 149
D +I+ +L KL Q+ + +L+ + IFE AN +GL G WI+
Sbjct: 182 DSKIQNQLKKL---QSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIV 227
>pdb|3H5V|A Chain A, Crystal Structure Of The Glur2-atd
pdb|3H5V|B Chain B, Crystal Structure Of The Glur2-atd
pdb|3H5V|C Chain C, Crystal Structure Of The Glur2-atd
pdb|3H5W|A Chain A, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
pdb|3H5W|B Chain B, Crystal Structure Of The Glur2-Atd In Space Group P212121
Without Solvent
Length = 394
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 17/129 (13%)
Query: 184 LENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKTNVSR- 242
+ F RW +E P + L YDA + + EA + + +SR
Sbjct: 254 VSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFR-----NLRKQRIEISRR 308
Query: 243 -NATDLEA-----FGISQNGPKLLQALSSTRFKGLTGDYIF-VDGQLQSSAFEIINVN-N 294
NA D A +G G ++ +AL + +GL+G+ F +G+ + I+ + N
Sbjct: 309 GNAGDCLANPAVPWG---QGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTN 365
Query: 295 GARGVGFWT 303
G R +G+W+
Sbjct: 366 GPRKIGYWS 374
>pdb|3O2J|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
pdb|3O2J|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, N54a
Length = 388
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 17/129 (13%)
Query: 184 LENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKTNVSR- 242
+ F RW +E P + L YDA + + EA + + +SR
Sbjct: 249 VSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFR-----NLRKQRIEISRR 303
Query: 243 -NATDLEA-----FGISQNGPKLLQALSSTRFKGLTGDYIF-VDGQLQSSAFEIINVN-N 294
NA D A +G G ++ +AL + +GL+G+ F +G+ + I+ + N
Sbjct: 304 GNAGDCLANPAVPWG---QGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTN 360
Query: 295 GARGVGFWT 303
G R +G+W+
Sbjct: 361 GPRKIGYWS 369
>pdb|3N6V|A Chain A, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|B Chain B, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|C Chain C, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|D Chain D, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|E Chain E, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
pdb|3N6V|F Chain F, Structure Of The Glua2 Ntd-Dimer Interface Mutant, T78a
Length = 374
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 17/129 (13%)
Query: 184 LENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKTNVSR- 242
+ F RW +E P + L YDA + + EA + + +SR
Sbjct: 244 VSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFR-----NLRKQRIEISRR 298
Query: 243 -NATDLEA-----FGISQNGPKLLQALSSTRFKGLTGDYIF-VDGQLQSSAFEIINVN-N 294
NA D A +G G ++ +AL + +GL+G+ F +G+ + I+ + N
Sbjct: 299 GNAGDCLANPAVPWG---QGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTN 355
Query: 295 GARGVGFWT 303
G R +G+W+
Sbjct: 356 GPRKIGYWS 364
>pdb|2WJW|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 1.8 A Resolution
pdb|2WJX|A Chain A, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|B Chain B, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
pdb|2WJX|C Chain C, Crystal Structure Of The Human Ionotropic Glutamate
Receptor Glur2 Atd Region At 4.1 A Resolution
Length = 388
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 17/126 (13%)
Query: 187 FRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKTNVSR--NA 244
F RW +E P + L YDA + + EA + + +SR NA
Sbjct: 249 FIERWSTLEEKEYPGAHTTTIKYTSALTYDAVQVMTEAFR-----NLRKQRIEISRRGNA 303
Query: 245 TDLEA-----FGISQNGPKLLQALSSTRFKGLTGDYIF-VDGQLQSSAFEIINVN-NGAR 297
D A +G G ++ +AL + +GL+G+ F +G+ + I+ + NG R
Sbjct: 304 GDCLANPAVPWG---QGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPR 360
Query: 298 GVGFWT 303
+G+W+
Sbjct: 361 KIGYWS 366
>pdb|3HSY|A Chain A, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
pdb|3HSY|B Chain B, High Resolution Structure Of A Dimeric Glur2 N-Terminal
Domain (Ntd)
Length = 376
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 17/129 (13%)
Query: 184 LENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKTNVSR- 242
+ F RW +E P + L YDA + + EA + + +SR
Sbjct: 246 VSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFR-----NLRKQRIEISRR 300
Query: 243 -NATDLEA-----FGISQNGPKLLQALSSTRFKGLTGDYIF-VDGQLQSSAFEIINVN-N 294
NA D A +G G ++ +AL + +GL+G+ F +G+ + I+ + N
Sbjct: 301 GNAGDCLANPAVPWG---QGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTN 357
Query: 295 GARGVGFWT 303
G R +G+W+
Sbjct: 358 GPRKIGYWS 366
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,540,779
Number of Sequences: 62578
Number of extensions: 942724
Number of successful extensions: 2258
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2078
Number of HSP's gapped (non-prelim): 188
length of query: 852
length of database: 14,973,337
effective HSP length: 107
effective length of query: 745
effective length of database: 8,277,491
effective search space: 6166730795
effective search space used: 6166730795
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)