Query 003054
Match_columns 852
No_of_seqs 519 out of 3544
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 11:38:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 3.6E-89 1.2E-93 840.8 54.8 702 2-749 72-814 (823)
2 3hsy_A Glutamate receptor 2; l 100.0 2.7E-38 9.2E-43 351.7 26.9 296 2-310 72-373 (376)
3 3o21_A Glutamate receptor 3; p 100.0 6E-38 2E-42 350.3 29.8 296 2-311 81-380 (389)
4 3saj_A Glutamate receptor 1; r 100.0 1.4E-36 4.8E-41 338.9 27.4 294 2-310 79-376 (384)
5 3h6g_A Glutamate receptor, ion 100.0 8.5E-36 2.9E-40 334.0 28.2 294 2-311 83-383 (395)
6 3om0_A Glutamate receptor, ion 100.0 5E-36 1.7E-40 335.6 26.0 294 3-311 84-381 (393)
7 4f11_A Gamma-aminobutyric acid 100.0 2.4E-36 8.2E-41 342.8 23.4 302 2-332 97-422 (433)
8 4gpa_A Glutamate receptor 4; P 100.0 7.8E-35 2.7E-39 325.2 30.8 296 2-311 81-378 (389)
9 1jdp_A NPR-C, atrial natriuret 100.0 1.3E-34 4.4E-39 329.3 28.1 298 2-332 96-414 (441)
10 1dp4_A Atrial natriuretic pept 100.0 1.6E-34 5.6E-39 327.9 24.9 298 2-330 89-414 (435)
11 3qek_A NMDA glutamate receptor 100.0 3.8E-34 1.3E-38 319.3 25.9 279 2-330 82-384 (384)
12 2e4u_A Metabotropic glutamate 100.0 1.5E-33 5E-38 329.5 30.9 311 2-339 129-485 (555)
13 3sm9_A Mglur3, metabotropic gl 100.0 3.3E-33 1.1E-37 319.7 26.2 305 2-331 128-478 (479)
14 3qel_B Glutamate [NMDA] recept 100.0 4.6E-34 1.6E-38 314.9 18.1 271 5-329 81-363 (364)
15 3ks9_A Mglur1, metabotropic gl 100.0 2.4E-32 8.3E-37 313.9 27.6 313 2-337 140-496 (496)
16 3mq4_A Mglur7, metabotropic gl 100.0 4.9E-32 1.7E-36 310.7 16.8 291 2-303 129-467 (481)
17 3td9_A Branched chain amino ac 100.0 5.1E-29 1.7E-33 275.8 22.7 263 2-305 93-363 (366)
18 4f06_A Extracellular ligand-bi 100.0 9.3E-29 3.2E-33 274.2 23.1 268 2-302 84-360 (371)
19 3i45_A Twin-arginine transloca 100.0 1.1E-28 3.6E-33 275.5 22.2 269 2-309 85-364 (387)
20 3i09_A Periplasmic branched-ch 100.0 1.2E-28 4.3E-33 273.7 20.3 255 2-294 83-340 (375)
21 3ipc_A ABC transporter, substr 100.0 2.6E-28 8.8E-33 269.0 19.7 264 3-305 82-352 (356)
22 3n0w_A ABC branched chain amin 100.0 5.6E-28 1.9E-32 268.9 20.8 255 2-294 85-344 (379)
23 4evq_A Putative ABC transporte 100.0 2.4E-27 8.1E-32 263.2 25.0 264 3-304 95-363 (375)
24 3hut_A Putative branched-chain 100.0 1.3E-27 4.5E-32 263.6 22.5 263 3-304 85-353 (358)
25 3h5l_A Putative branched-chain 100.0 7.6E-28 2.6E-32 271.6 18.7 270 2-303 95-395 (419)
26 1usg_A Leucine-specific bindin 100.0 1.3E-27 4.6E-32 262.1 20.1 258 3-298 82-344 (346)
27 4eyg_A Twin-arginine transloca 99.9 8.9E-27 3E-31 257.9 23.2 267 2-304 84-359 (368)
28 3lkb_A Probable branched-chain 99.9 2.8E-27 9.6E-32 264.4 16.8 272 3-309 87-379 (392)
29 4gnr_A ABC transporter substra 99.9 4.8E-26 1.6E-30 250.6 22.0 256 2-301 87-350 (353)
30 3eaf_A ABC transporter, substr 99.9 4.9E-26 1.7E-30 254.3 21.3 268 2-308 87-375 (391)
31 3n0x_A Possible substrate bind 99.9 6.1E-26 2.1E-30 251.9 19.5 252 2-295 85-348 (374)
32 3lop_A Substrate binding perip 99.9 1.2E-25 4.1E-30 248.5 20.1 256 3-295 86-352 (364)
33 1yae_A Glutamate receptor, ion 99.9 7.6E-26 2.6E-30 244.5 16.6 277 343-715 11-304 (312)
34 3sg0_A Extracellular ligand-bi 99.9 1.4E-25 4.7E-30 249.9 16.6 266 3-298 102-384 (386)
35 3snr_A Extracellular ligand-bi 99.9 3.9E-25 1.3E-29 243.9 19.7 264 3-298 82-360 (362)
36 1pea_A Amidase operon; gene re 99.9 4.5E-24 1.5E-28 237.8 25.7 263 3-301 88-356 (385)
37 2a5s_A N-methyl-D-aspartate re 99.9 1.1E-25 3.9E-30 239.6 7.8 244 340-702 24-283 (284)
38 3g3k_A Glutamate receptor, ion 99.9 4.9E-24 1.7E-28 223.5 16.6 241 343-702 2-258 (259)
39 4h5g_A Amino acid ABC superfam 99.9 1.1E-23 3.9E-28 218.7 16.9 224 344-696 11-237 (243)
40 4gvo_A LMO2349 protein; struct 99.9 2.1E-23 7.3E-28 216.6 16.5 223 343-696 7-235 (243)
41 1pb7_A N-methyl-D-aspartate re 99.9 2.9E-24 1E-28 229.6 10.1 237 344-703 40-292 (292)
42 2rc8_A Glutamate [NMDA] recept 99.9 6.3E-24 2.2E-28 227.3 12.1 213 375-702 68-293 (294)
43 2v3u_A Glutamate receptor delt 99.9 9.7E-23 3.3E-27 214.1 18.6 241 343-702 1-264 (265)
44 3k4u_A Binding component of AB 99.9 4.6E-22 1.6E-26 206.5 19.3 231 343-703 3-235 (245)
45 3kzg_A Arginine 3RD transport 99.9 3.5E-22 1.2E-26 206.2 18.3 224 344-701 2-235 (237)
46 4f3p_A Glutamine-binding perip 99.9 1.4E-21 4.7E-26 203.5 20.1 223 342-698 21-244 (249)
47 3i6v_A Periplasmic His/Glu/Gln 99.9 1.4E-21 4.9E-26 201.2 17.6 219 344-703 4-224 (232)
48 1mqi_A Glutamate receptor 2; G 99.9 1.8E-21 6.2E-26 204.4 18.6 237 344-702 3-262 (263)
49 3hv1_A Polar amino acid ABC up 99.9 3.2E-21 1.1E-25 203.1 19.3 221 344-697 20-249 (268)
50 3kbr_A Cyclohexadienyl dehydra 99.9 1.7E-21 5.7E-26 201.3 16.7 222 344-696 14-237 (239)
51 3del_B Arginine binding protei 99.9 4.3E-21 1.5E-25 198.5 18.9 222 343-701 9-237 (242)
52 3tql_A Arginine-binding protei 99.9 7.4E-21 2.5E-25 194.3 17.5 218 345-695 2-227 (227)
53 1ii5_A SLR1257 protein; membra 99.9 2E-20 6.8E-25 192.0 20.6 222 344-697 3-227 (233)
54 3h7m_A Sensor protein; histidi 99.8 1.5E-20 5.1E-25 193.1 18.7 221 343-697 9-231 (234)
55 4dz1_A DALS D-alanine transpor 99.8 2E-20 6.8E-25 196.1 19.2 222 343-697 27-254 (259)
56 1wdn_A GLNBP, glutamine bindin 99.8 2.7E-20 9.1E-25 190.0 19.4 221 344-698 2-224 (226)
57 3mpk_A Virulence sensor protei 99.8 2.4E-20 8.3E-25 196.4 18.1 220 344-697 31-253 (267)
58 2y7i_A STM4351; arginine-bindi 99.8 6.1E-20 2.1E-24 187.9 19.9 218 343-696 4-228 (229)
59 2iee_A ORF2, probable ABC tran 99.8 1.5E-20 5.1E-25 198.5 14.2 222 343-696 19-246 (271)
60 4eq9_A ABC transporter substra 99.8 5.1E-20 1.7E-24 190.8 17.3 222 343-697 6-236 (246)
61 2h4a_A YRAM (HI1655); perplasm 99.8 2.4E-20 8.1E-25 201.0 14.8 240 2-295 68-312 (325)
62 1lst_A Lysine, arginine, ornit 99.8 5.3E-20 1.8E-24 189.8 16.9 222 344-697 3-233 (239)
63 3ckm_A YRAM (HI1655), LPOA; pe 99.8 4.6E-20 1.6E-24 200.4 16.6 243 4-300 72-320 (327)
64 2q88_A EHUB, putative ABC tran 99.8 8E-20 2.7E-24 190.9 16.6 223 344-695 12-239 (257)
65 4i62_A Amino acid ABC transpor 99.8 5.1E-19 1.7E-23 185.9 17.4 221 344-697 38-265 (269)
66 2pyy_A Ionotropic glutamate re 99.8 2.8E-19 9.7E-24 182.6 14.7 221 344-697 2-223 (228)
67 3qax_A Probable ABC transporte 99.8 1.5E-18 5.2E-23 182.1 19.6 218 344-697 30-254 (268)
68 2vha_A Periplasmic binding tra 99.8 8.3E-19 2.8E-23 186.6 17.6 227 344-701 16-253 (287)
69 2pvu_A ARTJ; basic amino acid 99.8 1.4E-18 4.8E-23 183.3 19.2 220 343-697 40-263 (272)
70 2yln_A Putative ABC transporte 99.8 1.1E-18 3.8E-23 185.4 18.0 219 344-698 56-279 (283)
71 2yjp_A Putative ABC transporte 99.8 1.7E-18 5.9E-23 184.7 17.7 218 344-696 54-276 (291)
72 1xt8_A Putative amino-acid tra 99.8 1.6E-18 5.5E-23 185.0 17.1 218 344-696 43-265 (292)
73 2v25_A Major cell-binding fact 99.7 1.8E-16 6E-21 165.3 10.8 214 344-695 37-258 (259)
74 3n5l_A Binding protein compone 98.7 5.3E-08 1.8E-12 104.0 13.2 215 344-695 3-242 (310)
75 3p7i_A PHND, subunit of alkylp 98.7 1.4E-07 4.7E-12 101.1 14.5 215 344-695 13-251 (321)
76 2ozz_A Hypothetical protein YH 98.6 3.7E-07 1.3E-11 91.1 12.8 182 374-695 29-223 (231)
77 2x26_A Periplasmic aliphatic s 98.0 6.3E-05 2.2E-09 79.8 14.2 118 570-695 97-231 (308)
78 3ksx_A Nitrate transport prote 97.9 0.00012 4.2E-09 78.3 14.1 92 570-667 123-219 (324)
79 3uif_A Sulfonate ABC transport 97.8 8.8E-05 3E-09 80.3 12.6 106 570-681 111-228 (348)
80 3un6_A Hypothetical protein sa 97.7 0.0001 3.5E-09 79.5 9.5 120 570-696 145-283 (341)
81 3ix1_A N-formyl-4-amino-5-amin 97.4 0.00066 2.3E-08 71.6 11.7 76 374-459 16-95 (302)
82 3qsl_A Putative exported prote 97.4 0.0015 5.3E-08 70.0 14.4 136 387-644 59-205 (346)
83 2f5x_A BUGD; periplasmic bindi 97.3 0.0043 1.5E-07 65.5 15.8 121 569-694 122-275 (312)
84 2dvz_A BUGE, putative exported 96.9 0.013 4.5E-07 61.8 15.1 122 569-695 126-280 (314)
85 2h0a_A TTHA0807, transcription 96.9 0.0055 1.9E-07 63.3 11.9 132 8-148 72-212 (276)
86 2qpq_A Protein BUG27; alpha/be 96.8 0.017 5.7E-07 60.7 15.0 120 569-695 113-267 (301)
87 2k1e_A Water soluble analogue 96.7 0.0015 5.1E-08 56.6 4.7 75 486-564 20-96 (103)
88 1dbq_A Purine repressor; trans 96.6 0.012 4.2E-07 61.0 12.5 127 13-145 86-216 (289)
89 2qu7_A Putative transcriptiona 96.5 0.0067 2.3E-07 63.2 9.6 126 13-145 83-216 (288)
90 4ddd_A Immunogenic protein; ss 96.5 0.0059 2E-07 65.1 9.3 58 570-633 138-202 (327)
91 3d8u_A PURR transcriptional re 96.5 0.013 4.6E-07 60.3 11.8 136 9-151 77-217 (275)
92 2h3h_A Sugar ABC transporter, 96.5 0.017 5.6E-07 61.0 12.6 136 8-152 76-217 (313)
93 3brq_A HTH-type transcriptiona 96.4 0.0089 3.1E-07 62.3 9.9 135 10-151 96-236 (296)
94 2x7q_A Ca3427, possible thiami 96.4 0.01 3.6E-07 63.0 9.9 105 570-684 112-236 (321)
95 2rjo_A Twin-arginine transloca 96.3 0.017 5.9E-07 61.5 11.6 138 8-149 82-229 (332)
96 3k4h_A Putative transcriptiona 96.3 0.014 4.6E-07 60.8 10.4 134 7-146 85-222 (292)
97 3clk_A Transcription regulator 96.3 0.014 4.9E-07 60.7 10.5 127 10-144 84-213 (290)
98 3bbl_A Regulatory protein of L 96.3 0.013 4.5E-07 60.9 10.1 136 9-151 82-224 (287)
99 2ih3_C Voltage-gated potassium 96.2 0.0068 2.3E-07 54.2 6.4 75 486-564 41-117 (122)
100 3cs3_A Sugar-binding transcrip 96.2 0.031 1E-06 57.7 12.1 131 9-149 75-210 (277)
101 2rgy_A Transcriptional regulat 96.2 0.014 4.8E-07 60.8 9.5 129 10-145 86-218 (290)
102 3gv0_A Transcriptional regulat 96.2 0.027 9.4E-07 58.5 11.7 133 7-146 82-218 (288)
103 2hsg_A Glucose-resistance amyl 96.2 0.017 6E-07 61.4 10.4 137 8-151 133-275 (332)
104 2o20_A Catabolite control prot 96.1 0.026 8.9E-07 60.1 11.5 134 11-151 139-275 (332)
105 2g29_A Nitrate transport prote 96.0 0.033 1.1E-06 61.4 12.1 103 574-683 151-272 (417)
106 2fep_A Catabolite control prot 96.0 0.031 1E-06 58.2 11.2 134 10-150 91-230 (289)
107 3brs_A Periplasmic binding pro 96.0 0.046 1.6E-06 56.6 12.6 135 8-151 84-224 (289)
108 3ksm_A ABC-type sugar transpor 95.9 0.034 1.2E-06 57.1 10.8 138 6-152 76-222 (276)
109 2fvy_A D-galactose-binding per 95.9 0.037 1.3E-06 57.9 11.3 132 7-139 77-226 (309)
110 2a9h_A Voltage-gated potassium 95.9 0.013 4.4E-07 54.6 6.7 76 487-566 65-142 (155)
111 4h33_A LMO2059 protein; bilaye 95.8 0.019 6.7E-07 52.3 7.5 56 509-564 42-99 (137)
112 3d02_A Putative LACI-type tran 95.8 0.059 2E-06 56.2 12.4 136 8-151 80-223 (303)
113 3eff_K Voltage-gated potassium 95.8 0.019 6.4E-07 52.6 7.3 73 487-563 21-95 (139)
114 3hcw_A Maltose operon transcri 95.8 0.044 1.5E-06 57.1 11.2 133 7-147 84-223 (295)
115 3rot_A ABC sugar transporter, 95.7 0.029 9.8E-07 58.6 9.6 133 6-144 78-216 (297)
116 2fn9_A Ribose ABC transporter, 95.7 0.051 1.7E-06 56.3 11.4 125 8-140 77-215 (290)
117 3ctp_A Periplasmic binding pro 95.7 0.024 8.4E-07 60.2 9.0 130 10-148 131-263 (330)
118 3dbi_A Sugar-binding transcrip 95.7 0.031 1.1E-06 59.6 9.8 139 6-151 135-278 (338)
119 3egc_A Putative ribose operon 95.7 0.029 9.9E-07 58.3 9.4 139 6-151 79-222 (291)
120 3gyb_A Transcriptional regulat 95.7 0.031 1E-06 57.7 9.5 132 13-151 78-212 (280)
121 3g1w_A Sugar ABC transporter; 95.7 0.061 2.1E-06 56.2 11.9 139 7-152 79-222 (305)
122 1qpz_A PURA, protein (purine n 95.7 0.049 1.7E-06 58.1 11.3 129 12-146 136-268 (340)
123 3g85_A Transcriptional regulat 95.6 0.044 1.5E-06 56.8 10.6 129 11-148 88-220 (289)
124 2iks_A DNA-binding transcripti 95.6 0.083 2.8E-06 54.9 12.7 136 8-152 94-234 (293)
125 2x7x_A Sensor protein; transfe 95.6 0.062 2.1E-06 56.9 11.6 136 8-152 81-223 (325)
126 3c3k_A Alanine racemase; struc 95.5 0.051 1.7E-06 56.3 10.4 126 13-148 85-216 (285)
127 3h75_A Periplasmic sugar-bindi 95.4 0.11 3.8E-06 55.5 13.2 145 5-151 77-241 (350)
128 4ab5_A Transcriptional regulat 95.4 0.12 4E-06 50.6 12.4 180 377-681 21-205 (222)
129 3gbv_A Putative LACI-family tr 95.4 0.032 1.1E-06 58.2 8.7 137 7-152 87-233 (304)
130 3qk7_A Transcriptional regulat 95.4 0.049 1.7E-06 56.8 9.9 137 8-151 82-223 (294)
131 3kjx_A Transcriptional regulat 95.3 0.071 2.4E-06 56.9 10.9 136 7-149 140-280 (344)
132 3l49_A ABC sugar (ribose) tran 95.2 0.074 2.5E-06 55.1 10.5 136 7-152 79-225 (291)
133 3o1i_D Periplasmic protein TOR 95.2 0.056 1.9E-06 56.4 9.5 129 8-141 82-218 (304)
134 1tjy_A Sugar transport protein 95.1 0.12 4.1E-06 54.4 12.1 138 6-152 77-223 (316)
135 3o74_A Fructose transport syst 95.1 0.084 2.9E-06 54.0 10.5 136 8-152 76-216 (272)
136 3ho7_A OXYR; beta-alpha-barrel 95.1 0.12 4.1E-06 51.0 11.2 182 378-683 25-212 (232)
137 3l6u_A ABC-type sugar transpor 95.0 0.11 3.9E-06 53.7 11.2 135 7-151 82-228 (293)
138 1zbm_A Hypothetical protein AF 95.0 0.062 2.1E-06 55.5 9.0 99 574-684 99-210 (280)
139 2ioy_A Periplasmic sugar-bindi 95.0 0.15 5.3E-06 52.5 12.1 135 8-152 76-217 (283)
140 3k9c_A Transcriptional regulat 94.9 0.13 4.4E-06 53.3 11.2 128 10-146 85-215 (289)
141 1byk_A Protein (trehalose oper 94.8 0.17 5.9E-06 51.1 11.9 126 12-151 77-205 (255)
142 3jvd_A Transcriptional regulat 94.8 0.13 4.3E-06 54.7 11.1 127 10-146 132-261 (333)
143 3e3m_A Transcriptional regulat 94.8 0.2 7E-06 53.6 12.8 135 8-149 143-283 (355)
144 3oxn_A Putative transcriptiona 94.7 0.58 2E-05 46.3 15.4 84 343-459 17-100 (241)
145 2vk2_A YTFQ, ABC transporter p 94.7 0.13 4.5E-06 53.8 10.7 132 8-144 77-219 (306)
146 3kke_A LACI family transcripti 94.7 0.14 4.9E-06 53.3 11.1 129 14-150 94-232 (303)
147 3lft_A Uncharacterized protein 94.6 0.31 1.1E-05 50.6 13.3 121 12-140 81-210 (295)
148 3h5o_A Transcriptional regulat 94.4 0.26 9E-06 52.3 12.6 134 8-149 135-272 (339)
149 3tb6_A Arabinose metabolism tr 94.4 0.07 2.4E-06 55.4 7.8 136 7-149 92-234 (298)
150 2i49_A Bicarbonate transporter 94.4 0.2 6.8E-06 55.3 11.7 106 573-683 153-280 (429)
151 3m9w_A D-xylose-binding peripl 94.3 0.19 6.4E-06 52.7 10.8 129 6-141 75-213 (313)
152 2zzv_A ABC transporter, solute 94.2 0.25 8.6E-06 53.1 12.0 59 568-637 164-222 (361)
153 2qh8_A Uncharacterized protein 94.2 0.22 7.4E-06 52.0 11.1 121 12-140 88-217 (302)
154 3jv9_A OXYR, transcriptional r 93.9 0.48 1.7E-05 45.8 12.5 68 378-459 18-85 (219)
155 3ldc_A Calcium-gated potassium 93.9 0.11 3.8E-06 42.5 6.3 52 510-561 28-81 (82)
156 3hs3_A Ribose operon repressor 93.8 0.22 7.5E-06 51.1 10.1 127 10-149 81-211 (277)
157 3ouf_A Potassium channel prote 93.7 0.065 2.2E-06 45.5 4.7 58 509-566 31-90 (97)
158 2pfy_A Putative exported prote 93.6 0.75 2.6E-05 47.9 13.8 87 568-667 129-216 (301)
159 4fe7_A Xylose operon regulator 93.6 0.53 1.8E-05 51.5 13.2 143 6-151 89-239 (412)
160 3bil_A Probable LACI-family tr 93.6 0.24 8.4E-06 52.8 10.2 129 9-146 140-271 (348)
161 2pfz_A Putative exported prote 93.5 0.74 2.5E-05 48.0 13.6 57 568-635 128-184 (301)
162 3pjs_K KCSA, voltage-gated pot 93.5 0.013 4.4E-07 55.6 -0.2 72 489-564 50-123 (166)
163 1us5_A Putative GLUR0 ligand b 93.4 0.29 9.8E-06 51.3 10.3 58 570-633 123-187 (314)
164 8abp_A L-arabinose-binding pro 93.3 0.26 8.9E-06 51.2 9.8 145 7-153 75-234 (306)
165 2q67_A Potassium channel prote 93.3 0.13 4.4E-06 45.1 6.0 55 510-564 49-105 (114)
166 3miz_A Putative transcriptiona 93.3 0.069 2.4E-06 55.7 5.1 134 9-148 87-229 (301)
167 3fzv_A Probable transcriptiona 93.2 0.99 3.4E-05 46.5 14.0 103 571-681 186-294 (306)
168 3huu_A Transcription regulator 93.0 0.15 5.1E-06 53.3 7.4 133 8-151 100-238 (305)
169 2dri_A D-ribose-binding protei 92.9 0.55 1.9E-05 47.9 11.4 133 9-151 77-215 (271)
170 1p7b_A Integral membrane chann 92.9 0.14 5E-06 53.8 6.9 61 506-566 92-154 (333)
171 2hzl_A Trap-T family sorbitol/ 92.8 0.78 2.7E-05 49.3 12.8 87 568-667 163-252 (365)
172 3e61_A Putative transcriptiona 92.7 0.23 7.9E-06 50.8 8.2 127 9-149 81-210 (277)
173 3jy6_A Transcriptional regulat 92.6 0.46 1.6E-05 48.6 10.1 133 7-149 78-214 (276)
174 2esn_A Probable transcriptiona 92.4 3.7 0.00013 42.2 17.2 103 570-681 192-301 (310)
175 3vou_A ION transport 2 domain 92.3 0.24 8.3E-06 45.6 6.8 54 510-563 52-107 (148)
176 2y7p_A LYSR-type regulatory pr 92.3 3.7 0.00013 39.8 16.2 69 377-459 21-89 (218)
177 4esw_A Pyrimidine biosynthesis 92.3 0.48 1.7E-05 50.4 10.2 64 570-640 103-170 (342)
178 1jx6_A LUXP protein; protein-l 92.2 0.33 1.1E-05 51.4 8.9 136 9-149 123-265 (342)
179 1xl4_A Inward rectifier potass 92.1 0.22 7.6E-06 51.7 6.9 60 505-564 77-138 (301)
180 1jye_A Lactose operon represso 92.0 1.2 4E-05 47.4 13.0 130 10-149 138-271 (349)
181 3ixl_A Amdase, arylmalonate de 92.0 0.58 2E-05 46.9 9.8 89 42-133 101-198 (240)
182 4gx0_A TRKA domain protein; me 91.9 0.24 8.3E-06 56.9 7.8 120 509-635 50-180 (565)
183 2ql3_A Probable transcriptiona 91.9 1.9 6.6E-05 41.2 13.4 68 378-459 19-86 (209)
184 1atg_A MODA, periplasmic molyb 91.7 0.71 2.4E-05 45.2 10.1 69 380-459 15-89 (231)
185 1orq_C Potassium channel; volt 91.7 0.27 9.3E-06 48.8 6.8 73 487-563 146-220 (223)
186 2fqx_A Membrane lipoprotein TM 91.4 1.4 4.6E-05 46.3 12.4 136 6-149 77-220 (318)
187 2hxr_A HTH-type transcriptiona 91.4 6.3 0.00022 38.4 16.9 68 378-459 44-111 (238)
188 2fyi_A HTH-type transcriptiona 91.3 4.7 0.00016 39.2 15.7 181 377-683 27-214 (228)
189 1lnq_A MTHK channels, potassiu 91.0 0.16 5.4E-06 54.1 4.6 125 510-642 45-172 (336)
190 3fxq_A LYSR type regulator of 91.0 2.9 0.0001 43.0 14.4 70 378-459 106-175 (305)
191 3h5t_A Transcriptional regulat 90.8 0.58 2E-05 50.2 8.9 130 9-145 146-297 (366)
192 1al3_A Cys regulon transcripti 90.1 8.9 0.00031 39.7 17.4 116 570-696 183-305 (324)
193 3gzg_A Molybdate-binding perip 90.0 1.6 5.4E-05 44.1 10.9 114 570-694 120-248 (253)
194 3r26_A Molybdate-binding perip 89.9 3.2 0.00011 41.2 13.0 113 570-694 107-232 (237)
195 1xs5_A 29 kDa protein, membran 89.5 5.8 0.0002 39.6 14.4 36 383-428 21-56 (241)
196 3beh_A MLL3241 protein; transm 88.8 0.32 1.1E-05 52.1 4.8 74 486-563 141-216 (355)
197 3bfj_A 1,3-propanediol oxidore 88.6 2.4 8.1E-05 45.9 11.7 88 48-135 23-114 (387)
198 1i6a_A OXYR, hydrogen peroxide 88.6 0.61 2.1E-05 45.4 6.4 69 377-459 18-86 (219)
199 2qks_A KIR3.1-prokaryotic KIR 88.5 0.71 2.4E-05 48.3 7.0 56 510-565 78-135 (321)
200 3ox4_A Alcohol dehydrogenase 2 88.1 1.9 6.5E-05 46.5 10.4 91 46-136 19-111 (383)
201 3uug_A Multiple sugar-binding 87.9 1.3 4.5E-05 46.4 8.9 133 7-144 77-232 (330)
202 1ixc_A CBNR, LYSR-type regulat 87.1 5.8 0.0002 40.2 13.2 83 344-459 90-172 (294)
203 1sw5_A Osmoprotection protein 86.7 3.3 0.00011 42.3 10.8 104 570-682 125-238 (275)
204 1uth_A LYSR-type regulatory pr 86.6 9.5 0.00033 39.3 14.7 68 378-459 119-186 (315)
205 1gud_A ALBP, D-allose-binding 86.6 2.7 9.2E-05 43.0 10.2 139 10-152 80-228 (288)
206 3kos_A HTH-type transcriptiona 86.4 9.3 0.00032 36.5 13.7 104 571-681 96-203 (219)
207 2xed_A Putative maleate isomer 86.0 3.2 0.00011 42.4 10.2 79 45-126 133-219 (273)
208 2xwv_A Sialic acid-binding per 83.9 15 0.00051 38.1 14.4 60 568-637 133-192 (312)
209 2dgd_A 223AA long hypothetical 83.3 3.8 0.00013 40.4 9.0 79 46-127 96-183 (223)
210 2hpg_A ABC transporter, peripl 83.3 6.8 0.00023 41.1 11.6 101 568-680 148-251 (327)
211 2r9r_B Paddle chimera voltage 83.2 0.91 3.1E-05 51.1 4.9 72 488-563 357-430 (514)
212 1rrm_A Lactaldehyde reductase; 83.0 2.6 8.9E-05 45.5 8.4 89 48-136 21-111 (386)
213 3hn0_A Nitrate transport prote 82.6 2.5 8.6E-05 43.4 7.7 61 579-644 95-161 (283)
214 3qi7_A Putative transcriptiona 82.5 5.5 0.00019 42.3 10.2 103 38-143 136-252 (371)
215 1vlj_A NADH-dependent butanol 82.1 4.9 0.00017 43.7 10.1 89 47-135 32-123 (407)
216 1o2d_A Alcohol dehydrogenase, 81.9 8.9 0.0003 41.0 12.0 89 47-136 30-121 (371)
217 4dik_A Flavoprotein; TM0755, e 81.2 9.5 0.00033 41.3 12.0 93 58-155 265-365 (410)
218 2hqb_A Transcriptional activat 81.1 24 0.00081 36.1 14.7 124 6-140 78-205 (296)
219 1nh8_A ATP phosphoribosyltrans 79.4 6.5 0.00022 40.2 9.1 101 570-682 121-224 (304)
220 3ukm_A Potassium channel subfa 79.2 1.8 6.1E-05 44.1 4.9 66 509-574 200-274 (280)
221 2h9b_A HTH-type transcriptiona 79.0 32 0.0011 35.1 15.0 68 378-459 104-171 (312)
222 2de3_A Dibenzothiophene desulf 78.1 3.1 0.0001 44.6 6.7 120 567-695 108-298 (365)
223 2vpn_A Periplasmic substrate b 77.3 10 0.00034 39.5 10.3 101 568-680 130-233 (316)
224 2h98_A HTH-type transcriptiona 76.9 46 0.0016 34.0 15.4 68 378-459 104-171 (313)
225 3lkv_A Uncharacterized conserv 76.4 17 0.00058 37.4 11.8 122 12-140 88-221 (302)
226 1r9l_A Glycine betaine-binding 76.4 7.4 0.00025 40.4 8.9 62 570-636 108-191 (309)
227 3uhj_A Probable glycerol dehyd 75.6 3.8 0.00013 44.1 6.6 82 48-133 43-126 (387)
228 4ef1_A Pheromone COB1/lipoprot 74.7 32 0.0011 34.1 12.5 37 382-428 21-57 (246)
229 3k6v_A Solute-binding protein 74.1 38 0.0013 35.7 13.8 87 603-694 221-329 (354)
230 3tmg_A Glycine betaine, L-prol 73.1 11 0.00037 38.5 9.0 40 380-430 32-71 (280)
231 1twy_A ABC transporter, peripl 72.9 77 0.0026 31.3 15.7 70 379-459 42-112 (290)
232 3hhf_B Transcriptional regulat 72.1 6.8 0.00023 37.2 7.0 65 378-459 21-85 (213)
233 3m9w_A D-xylose-binding peripl 71.6 9.3 0.00032 39.4 8.3 79 59-140 3-84 (313)
234 3ce9_A Glycerol dehydrogenase; 71.1 17 0.00057 38.5 10.3 109 33-152 12-122 (354)
235 3onm_A Transcriptional regulat 69.7 76 0.0026 30.4 14.4 66 378-459 41-106 (238)
236 3l6g_A Betaine ABC transporter 69.6 9.2 0.00031 38.5 7.4 42 378-430 16-57 (256)
237 1p99_A Hypothetical protein PG 69.5 30 0.001 35.5 11.4 36 383-428 56-91 (295)
238 1mkz_A Molybdenum cofactor bio 69.2 16 0.00054 34.2 8.5 65 58-124 10-78 (172)
239 2czl_A Hypothetical protein TT 69.1 12 0.00041 37.6 8.4 59 573-638 91-150 (272)
240 3l49_A ABC sugar (ribose) tran 68.4 15 0.0005 37.2 8.9 79 59-140 6-87 (291)
241 3h75_A Periplasmic sugar-bindi 68.2 6.7 0.00023 41.3 6.4 81 57-140 2-87 (350)
242 1jq5_A Glycerol dehydrogenase; 68.1 17 0.00057 38.8 9.6 96 48-151 22-119 (370)
243 3o74_A Fructose transport syst 66.4 16 0.00055 36.4 8.7 79 59-140 3-83 (272)
244 2rin_A Putative glycine betain 66.0 9.2 0.00031 39.5 6.7 61 570-636 105-181 (298)
245 3g1w_A Sugar ABC transporter; 65.7 8.4 0.00029 39.4 6.4 80 59-140 5-87 (305)
246 3s99_A Basic membrane lipoprot 64.9 56 0.0019 34.4 12.8 127 4-140 99-230 (356)
247 3dbi_A Sugar-binding transcrip 64.5 16 0.00055 38.0 8.5 81 57-140 60-144 (338)
248 3gbv_A Putative LACI-family tr 64.4 13 0.00046 37.7 7.7 84 57-140 7-95 (304)
249 3szp_A Transcriptional regulat 64.1 16 0.00055 36.6 8.2 80 344-459 90-169 (291)
250 3um7_A Potassium channel subfa 64.0 5.7 0.00019 41.1 4.5 53 509-561 114-168 (309)
251 2l82_A Designed protein OR32; 63.7 63 0.0021 26.8 11.9 97 35-140 4-104 (162)
252 3um7_A Potassium channel subfa 63.4 8.1 0.00028 39.9 5.5 54 510-563 224-285 (309)
253 1h3d_A ATP-phosphoribosyltrans 62.3 33 0.0011 35.1 9.8 100 570-682 116-218 (299)
254 3uug_A Multiple sugar-binding 61.8 15 0.00053 37.9 7.7 79 59-140 4-85 (330)
255 3tb6_A Arabinose metabolism tr 61.4 25 0.00085 35.5 9.1 79 59-140 16-100 (298)
256 1tjy_A Sugar transport protein 61.0 8.7 0.0003 39.8 5.5 80 59-140 4-86 (316)
257 3l6u_A ABC-type sugar transpor 60.7 20 0.00067 36.3 8.1 80 58-140 8-90 (293)
258 3sya_A G protein-activated inw 60.6 12 0.0004 39.2 6.2 60 508-567 89-152 (340)
259 3d02_A Putative LACI-type tran 59.7 16 0.00054 37.2 7.2 80 59-140 5-87 (303)
260 4edp_A ABC transporter, substr 59.3 89 0.003 32.1 13.3 82 607-693 215-298 (351)
261 2xxp_A CPS2A; replication, pep 59.3 8.1 0.00028 41.6 4.9 68 567-643 25-99 (398)
262 3jy6_A Transcriptional regulat 59.0 19 0.00064 36.1 7.5 78 58-140 7-86 (276)
263 2l69_A Rossmann 2X3 fold prote 58.9 43 0.0015 27.0 7.7 101 31-139 24-125 (134)
264 3jzd_A Iron-containing alcohol 57.1 20 0.0007 37.9 7.6 97 47-152 25-123 (358)
265 3lmz_A Putative sugar isomeras 56.9 39 0.0013 33.5 9.4 94 46-140 32-127 (257)
266 3hl0_A Maleylacetate reductase 56.8 26 0.00088 37.0 8.3 84 47-134 23-108 (353)
267 8abp_A L-arabinose-binding pro 56.3 22 0.00074 36.2 7.6 78 59-140 3-83 (306)
268 3p6l_A Sugar phosphate isomera 55.9 42 0.0014 33.3 9.5 94 46-140 24-129 (262)
269 3rot_A ABC sugar transporter, 54.6 18 0.00063 36.7 6.6 81 59-140 4-87 (297)
270 2hxw_A Major antigenic peptide 54.2 75 0.0026 30.6 10.9 40 380-431 16-55 (237)
271 1y5e_A Molybdenum cofactor bio 53.9 38 0.0013 31.4 8.0 67 56-124 11-81 (169)
272 1ta9_A Glycerol dehydrogenase; 53.8 25 0.00084 38.6 7.7 97 47-151 80-178 (450)
273 2fn9_A Ribose ABC transporter, 53.7 24 0.00084 35.5 7.4 79 59-140 3-84 (290)
274 3cfx_A UPF0100 protein MA_0280 53.7 1.9E+02 0.0063 29.1 15.2 68 381-459 21-94 (296)
275 3h5o_A Transcriptional regulat 53.4 27 0.00094 36.2 7.9 80 57-140 61-142 (339)
276 2vd3_A ATP phosphoribosyltrans 53.4 24 0.00082 35.8 6.9 101 570-682 106-208 (289)
277 3brq_A HTH-type transcriptiona 53.0 38 0.0013 34.0 8.8 80 57-140 18-102 (296)
278 1i4n_A Indole-3-glycerol phosp 53.0 52 0.0018 32.7 9.3 87 45-140 62-151 (251)
279 3spc_A Inward-rectifier K+ cha 52.1 21 0.00073 37.3 6.5 60 508-567 92-155 (343)
280 2yxb_A Coenzyme B12-dependent 52.0 84 0.0029 28.7 10.0 85 59-150 19-107 (161)
281 3rfq_A Pterin-4-alpha-carbinol 51.7 32 0.0011 32.5 7.1 66 57-124 29-98 (185)
282 2pjk_A 178AA long hypothetical 51.6 42 0.0014 31.4 8.0 67 56-124 13-90 (178)
283 3k4h_A Putative transcriptiona 50.7 23 0.00078 35.7 6.6 80 57-140 7-93 (292)
284 2q5c_A NTRC family transcripti 50.7 33 0.0011 32.8 7.2 109 16-141 54-162 (196)
285 3tqw_A Methionine-binding prot 50.7 79 0.0027 31.1 10.0 30 389-428 28-57 (240)
286 3huu_A Transcription regulator 50.4 21 0.00072 36.4 6.3 86 51-140 15-107 (305)
287 1oj7_A Hypothetical oxidoreduc 50.4 23 0.00079 38.2 6.8 83 49-135 43-128 (408)
288 3cfz_A UPF0100 protein MJ1186; 50.0 1.3E+02 0.0044 30.2 12.3 68 381-459 21-94 (292)
289 2qip_A Protein of unknown func 49.8 77 0.0026 29.1 9.5 92 47-140 36-134 (165)
290 3e3m_A Transcriptional regulat 49.8 34 0.0012 35.8 8.0 80 57-140 69-150 (355)
291 1y80_A Predicted cobalamin bin 48.5 75 0.0026 30.4 9.6 88 59-152 89-180 (210)
292 2fvy_A D-galactose-binding per 48.1 34 0.0012 34.7 7.5 79 59-140 3-85 (309)
293 3kke_A LACI family transcripti 48.0 33 0.0011 34.9 7.3 87 50-140 7-95 (303)
294 1jx6_A LUXP protein; protein-l 48.0 38 0.0013 35.1 7.9 82 59-140 44-129 (342)
295 3pzy_A MOG; ssgcid, seattle st 47.8 30 0.001 31.9 6.2 63 59-124 8-75 (164)
296 2is8_A Molybdopterin biosynthe 47.5 40 0.0014 31.1 7.0 63 60-124 3-71 (164)
297 3tsm_A IGPS, indole-3-glycerol 47.3 1.1E+02 0.0038 30.7 10.8 87 46-140 81-170 (272)
298 3cij_A UPF0100 protein AF_0094 46.8 2.3E+02 0.008 28.2 16.0 68 381-459 21-94 (295)
299 1jye_A Lactose operon represso 46.8 38 0.0013 35.4 7.7 81 58-140 61-143 (349)
300 3ksm_A ABC-type sugar transpor 46.5 24 0.00082 35.1 5.9 80 60-140 2-85 (276)
301 3iwt_A 178AA long hypothetical 46.4 50 0.0017 30.8 7.7 63 60-124 17-90 (178)
302 3mz1_A Putative transcriptiona 46.3 82 0.0028 31.2 10.1 74 601-681 212-287 (300)
303 3ukm_A Potassium channel subfa 46.2 15 0.0005 37.3 4.0 56 507-562 90-147 (280)
304 2fep_A Catabolite control prot 46.0 35 0.0012 34.4 7.1 79 58-140 16-96 (289)
305 3k9c_A Transcriptional regulat 45.9 44 0.0015 33.6 7.8 83 52-140 6-89 (289)
306 2h3h_A Sugar ABC transporter, 45.8 30 0.001 35.4 6.6 79 60-140 3-83 (313)
307 3fni_A Putative diflavin flavo 45.8 47 0.0016 30.3 7.2 87 59-153 5-98 (159)
308 2ks1_B Epidermal growth factor 45.0 40 0.0014 23.5 4.8 13 735-747 28-40 (44)
309 2fqx_A Membrane lipoprotein TM 44.8 47 0.0016 34.2 8.0 62 59-124 5-71 (318)
310 3bil_A Probable LACI-family tr 44.7 27 0.00091 36.6 6.1 78 59-140 67-146 (348)
311 2o20_A Catabolite control prot 44.5 36 0.0012 35.1 7.1 80 57-140 62-143 (332)
312 3muq_A Uncharacterized conserv 44.4 2.3E+02 0.0078 27.7 12.4 74 376-460 18-94 (237)
313 1ccw_A Protein (glutamate muta 44.3 95 0.0033 27.4 8.8 86 59-151 4-93 (137)
314 3fd3_A Chromosome replication 43.8 1.9E+02 0.0065 26.3 14.7 67 377-458 15-81 (208)
315 3r6u_A Choline-binding protein 43.8 1.5E+02 0.0053 29.9 11.4 90 569-667 130-230 (284)
316 2pju_A Propionate catabolism o 43.7 32 0.0011 33.6 5.9 109 16-141 66-174 (225)
317 3rvy_A ION transport protein; 43.4 20 0.0007 36.4 4.7 57 509-565 179-243 (285)
318 2ioy_A Periplasmic sugar-bindi 43.1 38 0.0013 34.0 6.8 79 59-140 2-83 (283)
319 2g2c_A Putative molybdenum cof 41.6 34 0.0011 31.7 5.5 64 59-124 6-78 (167)
320 2iks_A DNA-binding transcripti 41.6 24 0.00083 35.6 5.0 87 51-140 13-101 (293)
321 2vk2_A YTFQ, ABC transporter p 41.4 32 0.0011 35.0 5.9 79 59-140 3-84 (306)
322 3e61_A Putative transcriptiona 41.4 51 0.0017 32.7 7.4 77 58-140 8-87 (277)
323 3hcw_A Maltose operon transcri 41.0 1.4E+02 0.0047 29.9 10.8 79 58-140 7-92 (295)
324 3cg4_A Response regulator rece 40.0 1.7E+02 0.006 24.8 11.0 56 73-137 18-75 (142)
325 2dri_A D-ribose-binding protei 39.7 50 0.0017 32.7 7.0 79 59-140 2-83 (271)
326 2rgy_A Transcriptional regulat 39.6 37 0.0013 34.2 6.0 79 58-140 8-91 (290)
327 3kjx_A Transcriptional regulat 39.2 70 0.0024 33.1 8.3 78 59-140 69-148 (344)
328 3d8u_A PURR transcriptional re 39.2 48 0.0016 32.8 6.8 78 59-140 4-83 (275)
329 3ezx_A MMCP 1, monomethylamine 39.1 1.2E+02 0.0042 29.1 9.4 88 59-152 93-186 (215)
330 2qsx_A Putative transcriptiona 39.0 2E+02 0.007 26.8 11.2 69 606-681 140-210 (218)
331 3rf7_A Iron-containing alcohol 38.9 69 0.0024 34.0 8.1 84 48-135 40-131 (375)
332 2rjo_A Twin-arginine transloca 38.8 41 0.0014 34.7 6.4 79 59-140 6-89 (332)
333 2x7x_A Sensor protein; transfe 38.7 69 0.0024 32.8 8.1 80 58-140 6-88 (325)
334 3isp_A HTH-type transcriptiona 38.7 1.6E+02 0.0056 29.2 11.0 45 411-459 128-172 (303)
335 4a29_A Engineered retro-aldol 38.5 1.1E+02 0.0037 30.4 8.8 86 48-142 68-156 (258)
336 3s99_A Basic membrane lipoprot 37.6 42 0.0014 35.4 6.2 76 58-137 26-107 (356)
337 2jwa_A Receptor tyrosine-prote 37.6 60 0.0021 22.6 4.7 23 726-748 18-40 (44)
338 3lkv_A Uncharacterized conserv 37.5 2E+02 0.0067 29.1 11.3 66 58-124 8-78 (302)
339 3qk7_A Transcriptional regulat 36.9 51 0.0017 33.2 6.6 78 58-140 6-89 (294)
340 3egc_A Putative ribose operon 36.8 26 0.0009 35.3 4.4 80 57-140 7-88 (291)
341 3hs3_A Ribose operon repressor 36.7 55 0.0019 32.6 6.8 70 51-123 3-75 (277)
342 3cg1_A UPF0100 protein PF0080; 36.6 3.3E+02 0.011 27.0 13.1 68 381-459 21-99 (296)
343 3kbq_A Protein TA0487; structu 36.6 65 0.0022 29.9 6.5 62 59-123 4-70 (172)
344 3iv7_A Alcohol dehydrogenase I 36.4 30 0.001 36.7 4.8 95 47-152 26-122 (364)
345 3hp4_A GDSL-esterase; psychrot 36.3 1.8E+02 0.0061 26.4 9.9 80 59-139 3-103 (185)
346 2l2t_A Receptor tyrosine-prote 36.2 48 0.0016 23.1 4.0 9 739-747 31-39 (44)
347 3hly_A Flavodoxin-like domain; 36.1 61 0.0021 29.5 6.4 86 60-153 2-93 (161)
348 5nul_A Flavodoxin; electron tr 35.8 78 0.0027 27.6 6.9 82 61-154 1-91 (138)
349 3gv0_A Transcriptional regulat 35.6 57 0.0019 32.7 6.7 80 57-140 7-90 (288)
350 3lte_A Response regulator; str 35.5 82 0.0028 26.7 7.0 59 73-140 17-77 (132)
351 3l4e_A Uncharacterized peptida 35.1 72 0.0025 30.6 6.9 85 47-140 16-102 (206)
352 4es6_A Uroporphyrinogen-III sy 35.1 30 0.001 34.5 4.3 87 42-137 112-206 (254)
353 3to5_A CHEY homolog; alpha(5)b 34.5 87 0.003 27.6 6.9 71 73-151 23-95 (134)
354 3i42_A Response regulator rece 34.4 84 0.0029 26.4 6.8 57 73-138 14-72 (127)
355 2hqb_A Transcriptional activat 34.4 55 0.0019 33.2 6.4 64 59-125 6-73 (296)
356 3brs_A Periplasmic binding pro 34.3 22 0.00075 35.8 3.2 81 59-140 6-91 (289)
357 3zy2_A Putative GDP-fucose pro 34.0 92 0.0032 32.3 7.6 89 39-140 261-349 (362)
358 3bbl_A Regulatory protein of L 33.9 42 0.0014 33.7 5.3 78 59-140 5-88 (287)
359 1xah_A Sadhqs, 3-dehydroquinat 33.8 50 0.0017 34.8 6.0 110 32-152 10-126 (354)
360 2klu_A T-cell surface glycopro 33.6 51 0.0017 24.9 4.0 18 723-740 12-29 (70)
361 3lr1_A Tungstate ABC transport 33.3 24 0.00083 34.8 3.2 74 376-460 18-94 (236)
362 1dbq_A Purine repressor; trans 33.1 59 0.002 32.5 6.3 64 59-125 8-73 (289)
363 3c3k_A Alanine racemase; struc 33.1 1E+02 0.0035 30.7 8.2 78 58-140 8-87 (285)
364 3o66_A Glycine betaine/carniti 32.8 1.9E+02 0.0065 29.1 10.0 64 569-637 129-200 (282)
365 3gt7_A Sensor protein; structu 32.5 89 0.0031 27.6 6.9 58 73-139 18-77 (154)
366 3t6k_A Response regulator rece 31.7 84 0.0029 27.0 6.4 58 73-139 15-74 (136)
367 1jlj_A Gephyrin; globular alph 31.6 97 0.0033 29.2 7.0 68 55-124 11-87 (189)
368 1gud_A ALBP, D-allose-binding 31.5 72 0.0025 31.9 6.7 81 59-140 2-85 (288)
369 2qmw_A PDT, prephenate dehydra 31.4 1.1E+02 0.0036 30.8 7.6 81 581-669 4-97 (267)
370 2hsg_A Glucose-resistance amyl 31.3 65 0.0022 33.1 6.4 78 59-140 61-140 (332)
371 1uuy_A CNX1, molybdopterin bio 31.3 64 0.0022 29.7 5.6 75 59-135 6-96 (167)
372 3clk_A Transcription regulator 30.7 40 0.0014 33.8 4.6 80 58-140 8-89 (290)
373 2l69_A Rossmann 2X3 fold prote 30.6 1.8E+02 0.0063 23.3 7.2 48 39-89 57-104 (134)
374 4euo_A ABC transporter, substr 30.5 4.2E+02 0.015 26.5 15.8 76 604-684 175-250 (320)
375 3gl9_A Response regulator; bet 30.3 87 0.003 26.3 6.1 70 73-151 13-84 (122)
376 2lpm_A Two-component response 29.5 46 0.0016 29.0 4.0 60 73-140 19-80 (123)
377 3kht_A Response regulator; PSI 29.5 2.2E+02 0.0074 24.4 8.9 72 73-151 16-89 (144)
378 1sg6_A Pentafunctional AROM po 29.2 1.5E+02 0.005 31.6 8.8 94 53-151 31-140 (393)
379 2pln_A HP1043, response regula 29.1 98 0.0033 26.5 6.4 55 73-138 29-83 (137)
380 1pii_A N-(5'phosphoribosyl)ant 28.9 1.2E+02 0.004 33.0 7.9 87 45-140 69-158 (452)
381 2q9u_A A-type flavoprotein; fl 28.9 2.2E+02 0.0074 30.2 10.3 88 58-152 256-351 (414)
382 3okf_A 3-dehydroquinate syntha 28.8 73 0.0025 34.0 6.2 110 33-151 41-158 (390)
383 3grc_A Sensor protein, kinase; 28.7 82 0.0028 27.1 5.8 71 73-152 17-89 (140)
384 3cnb_A DNA-binding response re 28.5 1.5E+02 0.0051 25.3 7.5 58 73-138 19-79 (143)
385 3f2i_A ALR0221 protein; alpha- 28.3 2.7E+02 0.0091 25.5 9.4 97 39-137 26-123 (172)
386 1zud_1 Adenylyltransferase THI 28.2 2.7E+02 0.0093 27.3 10.1 87 45-139 39-143 (251)
387 2k1k_A Ephrin type-A receptor 28.1 48 0.0016 22.3 2.9 16 729-744 22-37 (38)
388 3miz_A Putative transcriptiona 27.9 1.2E+02 0.0042 30.3 7.8 86 50-140 5-93 (301)
389 2nr1_A NR1 M2, M2; receptor, s 27.6 15 0.0005 22.4 0.2 19 508-526 6-24 (27)
390 3o1i_D Periplasmic protein TOR 27.5 40 0.0014 34.0 3.8 80 59-140 6-88 (304)
391 1di6_A MOGA, molybdenum cofact 27.4 1.2E+02 0.0042 28.6 7.0 64 59-124 4-75 (195)
392 3lua_A Response regulator rece 26.8 88 0.003 26.9 5.6 56 73-137 15-75 (140)
393 1xrs_B D-lysine 5,6-aminomutas 26.8 2.4E+02 0.0083 28.0 9.2 100 47-152 107-224 (262)
394 2bon_A Lipid kinase; DAG kinas 25.6 1.5E+02 0.0052 30.6 8.0 93 35-138 12-105 (332)
395 2qmx_A Prephenate dehydratase; 25.5 1.7E+02 0.0057 29.6 7.9 79 580-669 6-95 (283)
396 3mwb_A Prephenate dehydratase; 25.3 1.1E+02 0.0036 31.5 6.4 84 580-669 6-101 (313)
397 2pbq_A Molybdenum cofactor bio 25.0 1E+02 0.0036 28.6 5.9 63 59-124 6-77 (178)
398 2i2x_B MTAC, methyltransferase 25.0 3.4E+02 0.012 26.7 10.1 85 59-152 124-213 (258)
399 3cvg_A Putative metal binding 24.8 47 0.0016 33.8 3.7 73 377-459 33-114 (294)
400 3kto_A Response regulator rece 24.8 90 0.0031 26.7 5.3 59 73-140 17-79 (136)
401 3qja_A IGPS, indole-3-glycerol 24.8 1.8E+02 0.0063 29.1 8.0 88 46-141 74-164 (272)
402 2qv7_A Diacylglycerol kinase D 23.5 3.8E+02 0.013 27.5 10.6 77 58-139 24-104 (337)
403 1vc4_A Indole-3-glycerol phosp 23.5 2.8E+02 0.0097 27.3 9.1 97 46-154 67-165 (254)
404 3qbe_A 3-dehydroquinate syntha 23.3 2.2E+02 0.0074 30.0 8.6 109 32-151 22-138 (368)
405 1qpz_A PURA, protein (purine n 23.1 1.4E+02 0.0046 30.7 7.1 66 57-125 57-124 (340)
406 2j48_A Two-component sensor ki 23.0 2.4E+02 0.0081 22.6 7.5 58 73-139 12-71 (119)
407 1y81_A Conserved hypothetical 22.6 60 0.0021 28.8 3.5 35 115-152 69-103 (138)
408 2q02_A Putative cytoplasmic pr 22.5 3.8E+02 0.013 26.0 10.1 76 47-122 22-105 (272)
409 3cg0_A Response regulator rece 22.2 1.4E+02 0.0047 25.4 6.0 58 73-138 20-80 (140)
410 3f6c_A Positive transcription 22.1 2.3E+02 0.008 23.6 7.5 60 73-140 12-73 (134)
411 3irs_A Uncharacterized protein 22.0 3.7E+02 0.012 26.9 10.0 95 45-140 48-152 (291)
412 2zsk_A PH1733, 226AA long hypo 22.0 2.3E+02 0.008 27.2 8.1 43 45-90 102-144 (226)
413 1kq3_A Glycerol dehydrogenase; 21.9 37 0.0013 36.1 2.3 94 48-151 32-127 (376)
414 3fxb_A Trap dicarboxylate tran 21.7 1.2E+02 0.004 31.4 6.1 101 568-680 144-247 (326)
415 1gtk_A Porphobilinogen deamina 21.6 6.5E+02 0.022 25.6 12.3 60 571-638 114-175 (313)
416 2qxy_A Response regulator; reg 21.5 1.7E+02 0.0057 25.0 6.4 58 73-139 15-73 (142)
417 2zay_A Response regulator rece 21.5 1.2E+02 0.0042 26.1 5.6 56 73-137 19-76 (147)
418 3c3m_A Response regulator rece 21.5 1.9E+02 0.0063 24.7 6.7 58 73-139 14-73 (138)
419 3lft_A Uncharacterized protein 21.5 1.1E+02 0.0038 30.6 5.9 65 59-124 3-71 (295)
420 1usg_A Leucine-specific bindin 21.4 2E+02 0.0069 29.1 8.1 80 60-140 4-94 (346)
421 3p9x_A Phosphoribosylglycinami 21.1 2.2E+02 0.0074 27.3 7.3 85 45-135 15-102 (211)
422 3f6r_A Flavodoxin; FMN binding 21.0 89 0.0031 27.6 4.5 84 59-152 2-95 (148)
423 3hdv_A Response regulator; PSI 20.9 2.4E+02 0.0082 23.7 7.3 58 73-139 18-78 (136)
424 2qr3_A Two-component system re 20.6 1.4E+02 0.0049 25.3 5.7 58 73-139 14-78 (140)
425 1tmy_A CHEY protein, TMY; chem 20.4 2.3E+02 0.0079 23.1 7.0 59 73-139 13-73 (120)
426 2qu7_A Putative transcriptiona 20.3 1E+02 0.0034 30.7 5.2 64 59-125 9-73 (288)
427 2h0a_A TTHA0807, transcription 20.2 35 0.0012 33.9 1.6 76 61-140 2-79 (276)
428 1zz1_A Histone deacetylase-lik 20.2 81 0.0028 33.3 4.4 77 47-123 160-265 (369)
429 3h5i_A Response regulator/sens 20.1 3.9E+02 0.013 22.5 10.0 57 73-138 16-76 (140)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=3.6e-89 Score=840.79 Aligned_cols=702 Identities=20% Similarity=0.309 Sum_probs=577.5
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHH
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDA 81 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~ 81 (852)
.+.++++++++++||+|+++ .+.+ .++||+||+.|+ |+.+++++++++||++|++|| |++||.+.++.+.++
T Consensus 72 ~~~a~~~i~~~~~iP~is~~--~~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~ 143 (823)
T 3kg2_A 72 SVNTITSFCGTLHVSFITPS--FPTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDS 143 (823)
T ss_dssp THHHHHHHHHHTTCEEEECS--CCCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCceeecc--cCCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-eCChhHHHHHHHHHH
Confidence 57899999999999999973 3433 357999999998 899999999999999999999 889999999999999
Q ss_pred HHhCCceeeeeeecCCC--CChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCcccccccc
Q 003054 82 LQAIDTRVPYRSVISPL--ATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRT 159 (852)
Q Consensus 82 l~~~g~~v~~~~~~~~~--~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~ 159 (852)
+++.|++|+..+.++.+ .++.|+..+|++|+++++|+|+++++.+++..+++||+++||+.++|+||.++......+.
T Consensus 144 ~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~ 223 (823)
T 3kg2_A 144 AAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL 223 (823)
T ss_dssp HHHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC
T ss_pred hhccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCeEEEEecccccccch
Confidence 99999999999877654 2378899999999999999999999999999999999999999999999999854333222
Q ss_pred CCchhhcccceEEEEEecCCCChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccCcCccccc
Q 003054 160 LEPSVIDSMQGVIGVGPHVPKTKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKTN 239 (852)
Q Consensus 160 ~~~~~~~~~~gv~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~~~~~ 239 (852)
....+...|++++.++.+++|.+++|+++|+++|++++++.....++.+++++||||+++|+|+++++..........
T Consensus 224 --~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~~~ 301 (823)
T 3kg2_A 224 --LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRRG 301 (823)
T ss_dssp --SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSS
T ss_pred --HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHhhccccccCC
Confidence 123345667999999999999999999999999998776655556889999999999999999999986543322111
Q ss_pred cCCCCCCCccc--cccCChHHHHHHhhccceeeeeeeEEee-cCccccceEEEEEcc-CCcEEEEEEcCCCCcccccCCC
Q 003054 240 VSRNATDLEAF--GISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN-NGARGVGFWTPEKGLTQKLSSN 315 (852)
Q Consensus 240 ~~~~~~~~~~~--~~~~~g~~l~~al~~~~f~GltG~v~f~-~G~~~~~~~~I~~~~-~g~~~vG~w~~~~g~~~~~~~~ 315 (852)
.. .+|... ..+.+|++|+++|++++|+|++|++.|+ +|++....|+|++++ +|++.||+|++..|+....+
T Consensus 302 ~~---~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~w~~~~g~~~~~~-- 376 (823)
T 3kg2_A 302 NA---GDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVLTED-- 376 (823)
T ss_dssp CC---CCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEEEETTTEEEECCC--
T ss_pred CC---CCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCeeEEEEcCCCCceeccC--
Confidence 11 223322 4478899999999999999999999998 899988999999999 88999999999888764321
Q ss_pred ccccCCccceEeCCCCCCCCCcccccCCCceEEEeeecccCcccceEEe--eCCCCCCCceEEEeeHHHHHHHHHHCCCc
Q 003054 316 STTKSKLKPIIWPGDSTSDPKGWEVPTNEKKLRIGVPVKKGFSDFVNVT--IDPKTQEPTSVTGYCVDVFKAVIQELPYA 393 (852)
Q Consensus 316 ~~~~~~~~~i~Wpg~~~~~p~~~~~~~~~~~lrv~v~~~~~~~~~~~~~--~d~~~~~~~~~~G~~~dl~~~ia~~l~~~ 393 (852)
.. ....+++|+|++...+| |++.. .++.++++ ++.|||+||++++++++||+
T Consensus 377 --------------------~~--~~~~~~~l~v~~~~~~P---~~~~~~~~~~~~~~~-~~~G~~~dl~~~~a~~l~~~ 430 (823)
T 3kg2_A 377 --------------------DT--SGLEQKTVVVTTILESP---YVMMKANHAALAGNE-RYEGYCVDLAAEIAKHCGFK 430 (823)
T ss_dssp --------------------CC--SSCCCCCEEEEECCCTT---TSEECTTGGGCCGGG-GEESHHHHHHHHHHHHHTCC
T ss_pred --------------------cc--cccCCCEEEEEEecCCC---cEEEecCccccCCCC-ceEEEHHHHHHHHHHHcCCc
Confidence 00 12348899999976555 44442 23334677 99999999999999999997
Q ss_pred cceEEEecCCCCC---CCCCChhHHHHHHhcCcccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEee
Q 003054 394 VAYDFVPYGQPDG---SSSGSYNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFL 470 (852)
Q Consensus 394 ~~~~~~~~~~~~g---~~ngs~~~li~~l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l 470 (852)
++++.++.+ ..| ..||+|++++++|.+|++|++++++++|++|.+.+|||.||+.++.++++|++....++++.|+
T Consensus 431 ~~~~~~~~~-~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~~~~~~~~~~~~fl 509 (823)
T 3kg2_A 431 YKLTIVGDG-KYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFL 509 (823)
T ss_dssp EEEEECSSC-CCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEECCCCCCCCGGGTT
T ss_pred EEEEEccCC-cccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEEEEEECCCcccccchHhh
Confidence 766665532 223 2578999999999999999999999999999999999999999999999999876677899999
Q ss_pred cccchhHHHHHHHHHHHHHhhhhheecccCCCCCCCc--------------ccccchhHHHHHHHhhhcccc-ccccchh
Q 003054 471 QPLTWDLWVTCFCFFIFIGFVVWVLEHRVNEDFRGPA--------------GQQVGTSFWFSFSTMVFSQRE-RVISNLA 535 (852)
Q Consensus 471 ~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~-~~~s~~~ 535 (852)
+||++.+|++++++++++++++|+++|..+.+|+.+. ..++.+++|++++++++++.. .|++.+.
T Consensus 510 ~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~p~~~~~ 589 (823)
T 3kg2_A 510 DPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSG 589 (823)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTTSCC------CCCHHH
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHHHHhcCCCcCCcchhh
Confidence 9999999999999999999999999997644433211 235779999999999988754 6799999
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCC-eEEEEeCchHHHHHHhcCCCC-----------c
Q 003054 536 RIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGD-NVGYQKGSFVLGILKQLGFDE-----------R 603 (852)
Q Consensus 536 R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~-~vg~~~~s~~~~~l~~~~~~~-----------~ 603 (852)
|+++++|||++|||+++|||+|+|+||++++.++|+|++||.+++. ++|+..++....++++..... .
T Consensus 590 R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (823)
T 3kg2_A 590 RIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAE 669 (823)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHCCCHHHHHHHHHHHHCS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHhccchHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999998654 788877777788887643321 0
Q ss_pred ceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhc-CCceEeecccccccceEEEecCCCCchhhHHHHHHhcc
Q 003054 604 KLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQY-CSKYAMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVT 682 (852)
Q Consensus 604 ~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~ 682 (852)
....+++.+++++.+.+.. |.+|++.+.+.++|+..+. |+ ++++++.+...++++++||||||++.||++|+++.
T Consensus 670 ~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~y~~~~~~c~-l~~v~~~~~~~~~~~~~~k~spl~~~~~~~il~l~ 745 (823)
T 3kg2_A 670 PSVFVRTTAEGVARVRKSK---GKYAYLLESTMNEYIEQRKPCD-TMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLS 745 (823)
T ss_dssp SCCCBSSHHHHHHHHHTTT---TSEEEEEEHHHHHHHHTSTTCC-EEEESCCSSCEEECCEEETTCSSHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHhccC---CceEEEechHHHHHHHhcCCCc-eEEccccccccceeEeecCCChHHHHHHHHHHHHH
Confidence 1123468889999986321 2689999999999988776 95 88999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHccCCCCCCCCCC--CcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 003054 683 EGDKMKEIEDAWFKKHSSCPDAST--VVSSRSLGLNSFWGLFLIAGVAAILALIIFMAVFIHQHWNVLK 749 (852)
Q Consensus 683 e~G~~~~i~~kw~~~~~~c~~~~~--~~~~~~L~l~~~~g~f~il~ig~~lsl~vf~~e~~~~~r~~~~ 749 (852)
|+|++++|.++|+.+...|..... .....+|+++++.|+|+++++|+++|+++|++|++|++|++.+
T Consensus 746 e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~~~~~~~~~~ 814 (823)
T 3kg2_A 746 EQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAK 814 (823)
T ss_dssp HTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred hCCcHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHcchhhh
Confidence 999999999999988889987653 2456799999999999999999999999999999998877754
No 2
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=2.7e-38 Score=351.69 Aligned_cols=296 Identities=19% Similarity=0.260 Sum_probs=230.9
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHH
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDA 81 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~ 81 (852)
.+.++++++++++||+|+++++ . ..+.+|+||+.|+ |+.+++++++++||++|++|| |++||.+..+.|.++
T Consensus 72 ~~~av~~~~~~~~ip~is~~~~--~--~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~ 143 (376)
T 3hsy_A 72 SVNTITSFCGTLHVSFITPSFP--T--DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDS 143 (376)
T ss_dssp THHHHHHHHHHHTCEEEECSCC--C--CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHH
T ss_pred HHHHHHHHhccCcCceeecCCC--C--cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-eCchhHHHHHHHHHH
Confidence 5788999999999999999773 2 3457899999886 999999999999999999999 899999999999999
Q ss_pred HHhCCceeeeeeecCCC--CChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCcccccccc
Q 003054 82 LQAIDTRVPYRSVISPL--ATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRT 159 (852)
Q Consensus 82 l~~~g~~v~~~~~~~~~--~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~ 159 (852)
+++.|++|+....++.. .++.||..+|++|++++||+||++++..++..+++||+++||+.++|+||+++......+.
T Consensus 144 ~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~ 223 (376)
T 3hsy_A 144 AAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL 223 (376)
T ss_dssp HHHHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTTG
T ss_pred hhhcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCccccch
Confidence 99999999988766543 2468999999999999999999999999999999999999999999999998743222221
Q ss_pred CCchhhcccceEEEEEecCCCChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccCcCccccc
Q 003054 160 LEPSVIDSMQGVIGVGPHVPKTKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKTN 239 (852)
Q Consensus 160 ~~~~~~~~~~gv~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~~~~~ 239 (852)
. .......+++++..+.+++|.+++|+++|+++|++++++.....|+.+++++|||++++|+|+++++.......+.
T Consensus 224 ~--~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~~- 300 (376)
T 3hsy_A 224 L--KIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISRR- 300 (376)
T ss_dssp G--GSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSCC-
T ss_pred H--HhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhcCCccccC-
Confidence 1 1222344588888888899999999999999998866544334589999999999999999999998643322111
Q ss_pred cCCCCCCC--ccccccCChHHHHHHhhccceeeeeeeEEee-cCccccceEEEEEcc-CCcEEEEEEcCCCCccc
Q 003054 240 VSRNATDL--EAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN-NGARGVGFWTPEKGLTQ 310 (852)
Q Consensus 240 ~~~~~~~~--~~~~~~~~g~~l~~al~~~~f~GltG~v~f~-~G~~~~~~~~I~~~~-~g~~~vG~w~~~~g~~~ 310 (852)
....+| +..+.|.+|++|+++|++++|+|++|++.|+ +|++....|+|++++ +|++.||+|++..|+..
T Consensus 301 --~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~~~ 373 (376)
T 3hsy_A 301 --GNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKMVV 373 (376)
T ss_dssp --CCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred --CCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCceEEEEEcCCCCcee
Confidence 111233 3445578899999999999999999999998 999988999999999 88999999999999864
No 3
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=6e-38 Score=350.26 Aligned_cols=296 Identities=17% Similarity=0.248 Sum_probs=247.1
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHH
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDA 81 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~ 81 (852)
.+.++++++++++||+|++++ |.++ ..+|.||+.|+ |+.+++++++++||++|++|| |++||....+.|.++
T Consensus 81 ~~~a~~~i~~~~~iP~Is~s~--~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~ 152 (389)
T 3o21_A 81 SMNTLTSFCGALHTSFVTPSF--PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERGFSVLQAIMEA 152 (389)
T ss_dssp THHHHHHHHHHHTCCEEECSC--CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTCSHHHHHHHHH
T ss_pred HHHHHHHHhccCCCceeecCC--CCcc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-cCcHHHHHHHHHHHH
Confidence 578899999999999998754 4443 45678888876 999999999999999999999 889999999999999
Q ss_pred HHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCccccccccCC
Q 003054 82 LQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLE 161 (852)
Q Consensus 82 l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~~~ 161 (852)
+++.|++|+..+.++. .++.||.++|++|+++++|+||++++.+++..+++||+++||+.++|+||+++.+....+.
T Consensus 153 ~~~~g~~v~~~~~~~~-~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~~~-- 229 (389)
T 3o21_A 153 AVQNNWQVTARSVGNI-KDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDILL-- 229 (389)
T ss_dssp HHHTTCEEEEEECTTC-CCTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTGGGCCC--
T ss_pred hhcCCCeEEEEEecCC-CCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEccCCcccccH--
Confidence 9999999999887653 2456999999999999999999999999999999999999999999999998865543332
Q ss_pred chhhcccceEEEEEecCCCChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccCcCccccccC
Q 003054 162 PSVIDSMQGVIGVGPHVPKTKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKTNVS 241 (852)
Q Consensus 162 ~~~~~~~~gv~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~~~~~~~ 241 (852)
........|++++..+.+++|.+++|+++|+++|++++|+.....++.+++++|||++++|+|+++++..........
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~~~-- 307 (389)
T 3o21_A 230 ERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVSRRG-- 307 (389)
T ss_dssp HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC-----
T ss_pred HHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhCcccccCC--
Confidence 123345678999999999999999999999999987655443345788999999999999999999985432221110
Q ss_pred CCCCCC--ccccccCChHHHHHHhhccceeeeeeeEEee-cCccccceEEEEEcc-CCcEEEEEEcCCCCcccc
Q 003054 242 RNATDL--EAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN-NGARGVGFWTPEKGLTQK 311 (852)
Q Consensus 242 ~~~~~~--~~~~~~~~g~~l~~al~~~~f~GltG~v~f~-~G~~~~~~~~I~~~~-~g~~~vG~w~~~~g~~~~ 311 (852)
...+| +....|.+|++|+++|++++|+|++|++.|| +|++....|+|++++ +|++.||+|++..|+...
T Consensus 308 -~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~~~~ 380 (389)
T 3o21_A 308 -SAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYERFVPF 380 (389)
T ss_dssp ---CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTEEECC
T ss_pred -CCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCceeeeEEcCCCCcccc
Confidence 11223 3345588999999999999999999999998 999988899999999 889999999999998743
No 4
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=1.4e-36 Score=338.93 Aligned_cols=294 Identities=18% Similarity=0.263 Sum_probs=243.8
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHH
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDA 81 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~ 81 (852)
.+.++++++++++||+|+++ +|.++ ..+|+||+.|+ |+.+++++++++||++|++|| |++||.+..+.|.++
T Consensus 79 ~~~a~~~~~~~~~iP~is~~--~~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~~ 150 (384)
T 3saj_A 79 TVNMLTSFCGALHVCFITPS--FPVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRGLSVLQRVLDT 150 (384)
T ss_dssp HHHHHHHHHHHHTCCEEECS--CCCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCeEecc--ccCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-eCchhHHHHHHHHHH
Confidence 46789999999999999984 45554 46788898887 899999999999999999999 779999999999999
Q ss_pred HHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCccccccccCC
Q 003054 82 LQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLE 161 (852)
Q Consensus 82 l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~~~ 161 (852)
+++.|++|+....++ .++.||.++|.+|+++++|+|+++++..++..+++||+++||+.++|+||+++......+.
T Consensus 151 ~~~~g~~v~~~~~~~--~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~-- 226 (384)
T 3saj_A 151 AAEKNWQVTAVNILT--TTEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDIDL-- 226 (384)
T ss_dssp HHHHTCEEEEEEGGG--CCHHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEEESSSCGGGSCH--
T ss_pred hhhcCceEEEEEecc--CCchhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEECCCcccccH--
Confidence 999999999887554 3588999999999999999999999999999999999999999999999999854332221
Q ss_pred chhhcccceEEEEEecCCCChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccCcCccccccC
Q 003054 162 PSVIDSMQGVIGVGPHVPKTKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKTNVS 241 (852)
Q Consensus 162 ~~~~~~~~gv~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~~~~~~~ 241 (852)
........|++++.++.+++|..++|+++|+++|+.++|+.....++.+++++|||++++++|+++++........+.
T Consensus 227 ~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~~~~~~~~~~-- 304 (384)
T 3saj_A 227 NKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRIDISRRG-- 304 (384)
T ss_dssp HHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCC--
T ss_pred HHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhccceecCC--
Confidence 123345677999999999999999999999999988665444445688999999999999999999986433221111
Q ss_pred CCCCCCccc--cccCChHHHHHHhhccceeeeeeeEEee-cCccccceEEEEEcc-CCcEEEEEEcCCCCccc
Q 003054 242 RNATDLEAF--GISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN-NGARGVGFWTPEKGLTQ 310 (852)
Q Consensus 242 ~~~~~~~~~--~~~~~g~~l~~al~~~~f~GltG~v~f~-~G~~~~~~~~I~~~~-~g~~~vG~w~~~~g~~~ 310 (852)
...+|... ..|.+|++|+++|++++|+|++|++.|+ +|++....|+|++++ +|++.||+|++..|+..
T Consensus 305 -~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~W~~~~gl~~ 376 (384)
T 3saj_A 305 -NAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDDKFVP 376 (384)
T ss_dssp -SCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred -CCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCcceeEEEcCCCCccc
Confidence 11234332 3468999999999999999999999998 999988999999999 88999999999888753
No 5
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=8.5e-36 Score=334.02 Aligned_cols=294 Identities=18% Similarity=0.257 Sum_probs=245.2
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHH
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDA 81 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~ 81 (852)
.+.++++++++++||+|+++++++.+++ +.+|+||+.|++..|+.+++++++++||++|++|| |++||....+.+++.
T Consensus 83 ~~~a~~~~~~~~~ip~is~~~~~~~l~~-~~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~~ 160 (395)
T 3h6g_A 83 SANAVQSICNALGVPHIQTRWKHQVSDN-KDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQELIKA 160 (395)
T ss_dssp HHHHHHHHHHHTTCCEEECSCCCCCTTC-CCCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHHHHHTHHHHTG
T ss_pred HHHHHHHHHhcCCCCeEeeccCcccccc-cCceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhHHHHHHHHHHh
Confidence 4678999999999999999999999986 47899999999999999999999999999999998 788999999999999
Q ss_pred HHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCccccccccCC
Q 003054 82 LQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLE 161 (852)
Q Consensus 82 l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~~~ 161 (852)
+++.|++|+... ++.+ +.|+..+|.+|+++++|+|+++++..++..+++||+++||+.++|+||+++......+...
T Consensus 161 ~~~~g~~v~~~~-~~~~--~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~~~~~~~~~~~ 237 (395)
T 3h6g_A 161 PSRYNLRLKIRQ-LPAD--TKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVEP 237 (395)
T ss_dssp GGTSSCEEEEEE-CCSS--GGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCTTGGGBCCTT
T ss_pred hhcCCceEEEEE-eCCC--chhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCceEEEEecCceeEechHH
Confidence 999999999875 7644 7899999999999999999999999999999999999999999999998864332222111
Q ss_pred chhhcccceEEEEEecCCCChHHHHHHHHHHHhccccCCCCc----ccccchhhHhHhhHHHHHHHHHHHhcccCcCccc
Q 003054 162 PSVIDSMQGVIGVGPHVPKTKALENFRVRWKRNFLQENPSIV----DVELNIFGLLAYDATRALAEAVEKAGITSFGFDK 237 (852)
Q Consensus 162 ~~~~~~~~gv~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~----~~~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~~~ 237 (852)
. .....++.++..+.++++..++|+++|+++++...|... +..++.+++++|||++++++|+++++....
T Consensus 238 ~--~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~~~~~---- 311 (395)
T 3h6g_A 238 Y--RYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQMTV---- 311 (395)
T ss_dssp T--TTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTTCCC----
T ss_pred h--ccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhhhcCCC----
Confidence 1 111223677888888899999999999988765332211 113678999999999999999999875321
Q ss_pred cccCCCCCCCccccccCChHHHHHHhhccceeeeeeeEEee--cCccccceEEEEEcc-CCcEEEEEEcCCCCcccc
Q 003054 238 TNVSRNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV--DGQLQSSAFEIINVN-NGARGVGFWTPEKGLTQK 311 (852)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~g~~l~~al~~~~f~GltG~v~f~--~G~~~~~~~~I~~~~-~g~~~vG~w~~~~g~~~~ 311 (852)
...+|...+.+.+|++|+++|++++|+|++|++.|+ +|++....|.|++++ +|++.||+|++..|+...
T Consensus 312 -----~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w~~~~g~~~~ 383 (395)
T 3h6g_A 312 -----SSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTWDPASGLNMT 383 (395)
T ss_dssp -----CCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEEEEEEEEETTTEECCC
T ss_pred -----cCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCceEEEEEcCCCCcccc
Confidence 124456666789999999999999999999999996 899988899999999 789999999999998643
No 6
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=5e-36 Score=335.62 Aligned_cols=294 Identities=15% Similarity=0.229 Sum_probs=238.2
Q ss_pred hhHHHHhcCCCCccEEeeecCCCCCCCCCCCce--EeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHH
Q 003054 3 TNFIIQLGNKSQVPILSFSATSPSLTSIRSPYF--FRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTD 80 (852)
Q Consensus 3 a~~v~~i~~~~~vP~Is~~ats~~lt~~~~py~--fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~ 80 (852)
+.++++++++++||+|++++++. ...++||| ||+.|++..|+.+++++++++||++|++||+|++||+...+.+ +
T Consensus 84 ~~a~~~i~~~~~ip~is~~a~~~--~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~~-~ 160 (393)
T 3om0_A 84 ASTVSHICGEKEIPHIKVGPEET--PRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELV-R 160 (393)
T ss_dssp HHHHHHHHHHHTCCEEECSCCCC--C----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHHHHTHHHH-H
T ss_pred HHHHHHHHhccCCCeEeccCCcC--ccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHH-H
Confidence 36899999999999999988751 12468998 9999999999999999999999999999999999999876665 5
Q ss_pred HHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCccccccccC
Q 003054 81 ALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTL 160 (852)
Q Consensus 81 ~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~~ 160 (852)
.+++.|++|+... ++ ++.|+.++|.+|++++||+|+++++.+++..+++||+++||+.++|+||++++.....+..
T Consensus 161 ~~~~~g~~v~~~~-~~---~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~l~ 236 (393)
T 3om0_A 161 GFLISKETLSVRM-LD---DSRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPILHLD 236 (393)
T ss_dssp HHHHSSSCEEEEE-CC----CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTGGGCCCT
T ss_pred hhhccCCeEEEEe-cC---CCCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEecccccccchh
Confidence 5778899997654 32 3578999999999999999999999999999999999999999999999988755443321
Q ss_pred CchhhcccceEEEEEecCCCChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccCcCcccccc
Q 003054 161 EPSVIDSMQGVIGVGPHVPKTKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKTNV 240 (852)
Q Consensus 161 ~~~~~~~~~gv~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~~~~~~ 240 (852)
. ......|++++..+.+++|.+++|+++|+++|+..........|+.+++++|||++++++|+++++.... .
T Consensus 237 ~--~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~~~~~~~------~ 308 (393)
T 3om0_A 237 G--IVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQE------I 308 (393)
T ss_dssp T--TCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHHHTTTSC------C
T ss_pred h--hhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHHHHHHHHHhhccc------C
Confidence 1 2345678999998888899999999999999984321111125788999999999999999999975321 1
Q ss_pred CCCCCCCccccccCChHHHHHHhhccceeeeeeeEEee-cCccccceEEEEEcc-CCcEEEEEEcCCCCcccc
Q 003054 241 SRNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN-NGARGVGFWTPEKGLTQK 311 (852)
Q Consensus 241 ~~~~~~~~~~~~~~~g~~l~~al~~~~f~GltG~v~f~-~G~~~~~~~~I~~~~-~g~~~vG~w~~~~g~~~~ 311 (852)
.....+|...+.+.+|++|+++|++++|+|++|++.|+ +|++....|+|++++ +|++.||+|++..|+...
T Consensus 309 ~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~gl~~~ 381 (393)
T 3om0_A 309 GVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVWYSNRTLAMN 381 (393)
T ss_dssp CCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEEEEEECC------
T ss_pred cCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCceEeeeEcCCCCcccc
Confidence 12234566667789999999999999999999999998 999988999999999 889999999999998754
No 7
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=2.4e-36 Score=342.79 Aligned_cols=302 Identities=21% Similarity=0.295 Sum_probs=250.0
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCCC-CCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHH
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLTS-IRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTD 80 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt~-~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~ 80 (852)
.+.++++++++++||+|+++++++.+++ .++||+||+.|++..++.+++++++++||++|++||+|++||....+.|++
T Consensus 97 ~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~~~~~~~~~ 176 (433)
T 4f11_A 97 VTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVRNDLTG 176 (433)
T ss_dssp HHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhhHHHHHHHHH
Confidence 4678999999999999999999999997 478999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCccccccc--
Q 003054 81 ALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLR-- 158 (852)
Q Consensus 81 ~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~-- 158 (852)
++++.|++|+....++ .|+.++|.+|+++++|+|+++++..++..+++||+++||..++|+||++++....+.
T Consensus 177 ~~~~~g~~v~~~~~~~-----~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~~ 251 (433)
T 4f11_A 177 VLYGEDIEISDTESFS-----NDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQ 251 (433)
T ss_dssp HSSSSSCEEEEEEEES-----SCCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEEESCSCTTTTTC
T ss_pred HHHHcCceEEEEeccC-----cCHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEEEEcCcchHhHhcc
Confidence 9999999999988876 268899999999999999999999999999999999999888899999998332221
Q ss_pred ---------cCCchhhcccceEEEEEecCCCC--------hHHHHHHHHHHHh-ccccCCCCcccccchhhHhHhhHHHH
Q 003054 159 ---------TLEPSVIDSMQGVIGVGPHVPKT--------KALENFRVRWKRN-FLQENPSIVDVELNIFGLLAYDATRA 220 (852)
Q Consensus 159 ---------~~~~~~~~~~~gv~~~~~~~~~~--------~~~~~F~~~~~~~-~~~~~~~~~~~~~~~~a~~aYDAv~~ 220 (852)
.......+.++|++++.++.+.. +..++|.++|+++ ++. +|+.+++++||||++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~~~--------~~~~~a~~~YDAv~~ 323 (433)
T 4f11_A 252 VHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSGV--------GPSKFHGYAYDGIWV 323 (433)
T ss_dssp C------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHTTS--------CCCTTHHHHHHHHHH
T ss_pred cccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcCCC--------CcccchhhHHHHHHH
Confidence 12223456789999999876532 3478999999998 555 788999999999999
Q ss_pred HHHHHHHhcccCcCccccccCCCCCCCcc--ccccCChHHHHHHhhccceeeeeeeEEeecCccccceEEEEEcc-CCcE
Q 003054 221 LAEAVEKAGITSFGFDKTNVSRNATDLEA--FGISQNGPKLLQALSSTRFKGLTGDYIFVDGQLQSSAFEIINVN-NGAR 297 (852)
Q Consensus 221 lA~Al~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~l~~al~~~~f~GltG~v~f~~G~~~~~~~~I~~~~-~g~~ 297 (852)
+|+|+++++...... ..+.++.. ...+.++++|+++|++++|+|++|++.|++|++. ..|.|++++ ++++
T Consensus 324 la~Al~~a~~~~~~~------~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f~~Gd~~-~~~~I~~~~~g~~~ 396 (433)
T 4f11_A 324 IAKTLQRAMETLHAS------SRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVFRNGERM-GTIKFTQFQDSREV 396 (433)
T ss_dssp HHHHHHHHHHHHHHS------SSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEEETTEEE-CEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHhcc------CCCCcccccccccHHHHHHHHHHHHhcEEEccceEEEEecCcee-eeEEEEEEECCceE
Confidence 999999987432100 01111221 1124568999999999999999999999999984 899999999 4599
Q ss_pred EEEEEcCCCCcccccCCCccccCCccceEeCCCCC
Q 003054 298 GVGFWTPEKGLTQKLSSNSTTKSKLKPIIWPGDST 332 (852)
Q Consensus 298 ~vG~w~~~~g~~~~~~~~~~~~~~~~~i~Wpg~~~ 332 (852)
.||.|++...-. .+ +.+.|+|||+..
T Consensus 397 ~VG~~~~~~~~l-~~--------~~~~i~W~~~~~ 422 (433)
T 4f11_A 397 KVGEYNAVADTL-EI--------INDTIRFQGSEP 422 (433)
T ss_dssp EEEEEETTTTEE-EE--------CTTTCCCSSSSC
T ss_pred EEEEEECCCCeE-EE--------eCCceECCCCCC
Confidence 999998743221 11 225689999873
No 8
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=7.8e-35 Score=325.17 Aligned_cols=296 Identities=17% Similarity=0.223 Sum_probs=245.5
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHH
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDA 81 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~ 81 (852)
.+.+++++++.++||+|+++++.+..+ ++++++| |. ++++++++++++||++|++||+|+.++. ..+.+.+.
T Consensus 81 ~~~~v~~i~~~~~ip~is~~~~~~~~~--~~~~~~~--~~---~~~a~~~l~~~~~w~~vaii~~~d~~~~-~~~~~~~~ 152 (389)
T 4gpa_A 81 SVHTLTSFCSALHISLITPSFPTEGES--QFVLQLR--PS---LRGALLSLLDHYEWNCFVFLYDTDRGYS-ILQAIMEK 152 (389)
T ss_dssp THHHHHHHHHHTTCEEEECSCCCSSCC--SSEEECS--CC---CHHHHHHHHHHTTCCEEEEEECSTTCSH-HHHHHHHH
T ss_pred HHHHHHHHHHHhCCCceeccccccccc--cCCcccc--CC---HHHHHHHHHHHcCCcEEEEEEecchhhH-HHHHHHHH
Confidence 578999999999999999877655433 3455544 44 4579999999999999999997766654 57788899
Q ss_pred HHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCccccccccCC
Q 003054 82 LQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLE 161 (852)
Q Consensus 82 l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~~~ 161 (852)
+++.|++|+....++ ..+.|+..+|.++++.++|+||+.++..++..++++|+++||+.++|+|++++.+......
T Consensus 153 ~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~-- 228 (389)
T 4gpa_A 153 AGQNGWHVSAICVEN--FNDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDISL-- 228 (389)
T ss_dssp HHTTTCEEEEEECTT--CCHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGGGSCC--
T ss_pred HHhcCceEEEEeecC--CcchhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEEEEeCccccchhh--
Confidence 999999999887766 4589999999999999999999999999999999999999999999999999887654432
Q ss_pred chhhcccceEEEEEecCCCChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccCcCccccccC
Q 003054 162 PSVIDSMQGVIGVGPHVPKTKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKTNVS 241 (852)
Q Consensus 162 ~~~~~~~~gv~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~~~~~~~ 241 (852)
........|+.++..+.++++.+++|.++|++.+.+..+.. ...++.+++++||||+++|+|++++........... .
T Consensus 229 ~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~~~~~-~ 306 (389)
T 4gpa_A 229 ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGS-ETPPKYTSALTYDGVLVMAETFRSLRRQKIDISRRG-N 306 (389)
T ss_dssp HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTT-TSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTT-C
T ss_pred hhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcccC-CCChhHHHHHHHHHHHHHHHHHHHHHhhcccccccC-C
Confidence 23455678899999999999999999999999887754322 236899999999999999999999876654332211 1
Q ss_pred CCCCCCccccccCChHHHHHHhhccceeeeeeeEEee-cCccccceEEEEEcc-CCcEEEEEEcCCCCcccc
Q 003054 242 RNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN-NGARGVGFWTPEKGLTQK 311 (852)
Q Consensus 242 ~~~~~~~~~~~~~~g~~l~~al~~~~f~GltG~v~f~-~G~~~~~~~~I~~~~-~g~~~vG~w~~~~g~~~~ 311 (852)
..+..+.....|.+|..|+++|++++|+|++|+|.|| +|++....|+|+|++ +|+++||+|++.+|+...
T Consensus 307 ~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~VG~W~~~~gl~~~ 378 (389)
T 4gpa_A 307 AGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLVLI 378 (389)
T ss_dssp CCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEEEEEEETTTEEEEC
T ss_pred ccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEEEEEEEECCCCeEEC
Confidence 2223445556688999999999999999999999998 999988899999999 889999999999998653
No 9
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=1.3e-34 Score=329.32 Aligned_cols=298 Identities=14% Similarity=0.172 Sum_probs=235.6
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCCCC--CCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccc---cHH
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLTSI--RSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEE---MIP 76 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt~~--~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~---~~~ 76 (852)
.+.+++++++.+++|+|+++++++.|++. ++|||||+.|++..|+.+++++++++||++|++||+|++||+. ..+
T Consensus 96 ~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d~~~g~~~~~~~~ 175 (441)
T 1jdp_A 96 AAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYFTLE 175 (441)
T ss_dssp HHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECCSSSCHHHHHHH
T ss_pred hHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEcCCcccchHHHHH
Confidence 46789999999999999999999999974 6999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCc----
Q 003054 77 SLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDG---- 152 (852)
Q Consensus 77 ~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~---- 152 (852)
.|++++++.|++|+....++. ++.|+..++++|+ +++|||+++++.+++..++++|+++||..+.|+||+++.
T Consensus 176 ~~~~~~~~~g~~v~~~~~~~~--~~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~~~~v~i~~~~~~~~ 252 (441)
T 1jdp_A 176 GVHEVFQEEGLHTSIYSFDET--KDLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNIELFNSS 252 (441)
T ss_dssp HHHHHHHHHTCEEEEEEECTT--SCCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCTTTTCEEEEECSSCCC
T ss_pred HHHHHHHhcCcEEEEEEecCC--cccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCCCCCEEEEEEeccccc
Confidence 999999999999998876653 3557999999999 999999999999999999999999999888899998883
Q ss_pred ------cccccccCCchhhcccceEEEEEecCCCChHHHHHHHHHHHhcccc-CCCCcccccchhhHhHhhHHHHHHHHH
Q 003054 153 ------MTNLLRTLEPSVIDSMQGVIGVGPHVPKTKALENFRVRWKRNFLQE-NPSIVDVELNIFGLLAYDATRALAEAV 225 (852)
Q Consensus 153 ------~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~F~~~~~~~~~~~-~~~~~~~~~~~~a~~aYDAv~~lA~Al 225 (852)
|... +..........+++.++..+.++.|.+++|.++|+++++.. +. .+..++.+++++||||+++|+|+
T Consensus 253 ~~~~~~w~~~-~~~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~~~--~~~~~~~~~~~~YdAv~~~A~Al 329 (441)
T 1jdp_A 253 SYGDGSWKRG-DKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLN--MEDYVNMFVEGFHDAILLYVLAL 329 (441)
T ss_dssp STTTCTTCCS-STTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCC--CCSSCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCccC-CcccHHHHHHHHhheEEeecCCCCchHHHHHHHHHHHHhhCCCC--ccchhhhHHHHHHHHHHHHHHHH
Confidence 3211 11111011235666677777778899999999999874321 11 00135678999999999999999
Q ss_pred HHhcccCcCccccccCCCCCCCccccccCChHHHHHHhhccceeeeeeeEEee-cCccccceEEEEEcc---CC-cEEEE
Q 003054 226 EKAGITSFGFDKTNVSRNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN---NG-ARGVG 300 (852)
Q Consensus 226 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~al~~~~f~GltG~v~f~-~G~~~~~~~~I~~~~---~g-~~~vG 300 (852)
+++..... .+.++++|+++|++++|+|++|++.|+ +|++ ...|.|++++ +| ++.||
T Consensus 330 ~~~~~~~~------------------~~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~-~~~~~I~~~~~~~~g~~~~VG 390 (441)
T 1jdp_A 330 HEVLRAGY------------------SKKDGGKIIQQTWNRTFEGIAGQVSIDANGDR-YGDFSVIAMTDVEAGTQEVIG 390 (441)
T ss_dssp HHHHHTTC------------------CTTCHHHHHHHHSSEEEEETTEEEEECTTSBB-CCEEEEEEEEETTTTEEEEEE
T ss_pred HHHHHhCC------------------CCCCHHHHHHHHhCCeeECCccceEECCCCCc-cccEEEEecccCCCCceEEEE
Confidence 99852210 035689999999999999999999998 9998 4889999996 56 89999
Q ss_pred EEcCCCCcccccCCCccccCCccceEeCCCCC
Q 003054 301 FWTPEKGLTQKLSSNSTTKSKLKPIIWPGDST 332 (852)
Q Consensus 301 ~w~~~~g~~~~~~~~~~~~~~~~~i~Wpg~~~ 332 (852)
.|++..+..... ...+|+|||+..
T Consensus 391 ~~~~~~~~~~~~--------~~~~i~w~g~~l 414 (441)
T 1jdp_A 391 DYFGKEGRFEMR--------PNVKYPWGPLKL 414 (441)
T ss_dssp EEETTTTEEEEC--------C-----------
T ss_pred EEcCCCCeEEEC--------CCceeeCCCCCc
Confidence 999877643221 236788998753
No 10
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=1.6e-34 Score=327.88 Aligned_cols=298 Identities=16% Similarity=0.175 Sum_probs=244.0
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCCCC-CCCceEeccCCchhHHHHHHHHHHHcCCcEEEEE------EEeCCccccc
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLTSI-RSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPI------YVDNQYGEEM 74 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt~~-~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii------~~d~~~G~~~ 74 (852)
.+.+++++++.+++|+|+++++++.|++. ++|||||+.|++..|+.+++++++++||++|++| +.|++|| ..
T Consensus 89 ~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~~~~~~g-~~ 167 (435)
T 1dp4_A 89 SAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDDRPCF-FI 167 (435)
T ss_dssp HHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSSCCHHH-HH
T ss_pred HHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCCCCcchHH-HH
Confidence 46789999999999999999999999974 5999999999999999999999999999999999 7777888 55
Q ss_pred HHHHHHHHHh-CCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCcc
Q 003054 75 IPSLTDALQA-IDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGM 153 (852)
Q Consensus 75 ~~~l~~~l~~-~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~ 153 (852)
.+.+.+++++ .|++|+....++ .+..|+..++++|++ ++|||+++++..++..++++|+++|+..++|+||+++.+
T Consensus 168 ~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~ 244 (435)
T 1dp4_A 168 VEGLYMRVRERLNITVNHQEFVE--GDPDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGLTGEDYVFFHLDVF 244 (435)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECT--TCGGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTCCTTTCEEEEECTT
T ss_pred HHHHHHHHHhhcCeEEEEEEEec--CchhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHcCCCCCCEEEEEEecc
Confidence 6778888888 999999887664 347889999999998 999999999999999999999999998777999999877
Q ss_pred ccccc---------------cCCchhhcccceEEEEEecCCCChHHHHHHHHHHHhccccC-CCCcccccchhhHhHhhH
Q 003054 154 TNLLR---------------TLEPSVIDSMQGVIGVGPHVPKTKALENFRVRWKRNFLQEN-PSIVDVELNIFGLLAYDA 217 (852)
Q Consensus 154 ~~~~~---------------~~~~~~~~~~~gv~~~~~~~~~~~~~~~F~~~~~~~~~~~~-~~~~~~~~~~~a~~aYDA 217 (852)
..... .......+.++|++++.++.|+++..++|.++|+++++... .......++.+++++|||
T Consensus 245 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~yda 324 (435)
T 1dp4_A 245 GQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLKNIIPASFHDG 324 (435)
T ss_dssp CTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCCCSGGGHHHHHHHHH
T ss_pred cccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCChhHHHHHHHHHHHhcCCCCcccccchhhHHHHHHHHH
Confidence 64320 00122345678999988888889999999999998875310 000111367789999999
Q ss_pred HHHHHHHHHHhcccCcCccccccCCCCCCCccccccCChHHHHHHhhccceeeeeeeEEee-cCccccceEEEEEc--cC
Q 003054 218 TRALAEAVEKAGITSFGFDKTNVSRNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINV--NN 294 (852)
Q Consensus 218 v~~lA~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~al~~~~f~GltG~v~f~-~G~~~~~~~~I~~~--~~ 294 (852)
++++|+||+++.... +.+.++++|+++|++++|+|++|++.|+ +|++. ..|.|+++ .+
T Consensus 325 v~~~a~Al~~~~~~~------------------~~~~~~~~l~~~l~~~~f~g~~G~v~fd~~g~~~-~~~~i~~~~~~~ 385 (435)
T 1dp4_A 325 LLLYVQAVTETLAQG------------------GTVTDGENITQRMWNRSFQGVTGYLKIDRNGDRD-TDFSLWDMDPET 385 (435)
T ss_dssp HHHHHHHHHHHHHTT------------------CCTTCHHHHHHTTTTEEEEETTEEEEECTTSBBC-CCEEEEEECTTT
T ss_pred HHHHHHHHHHHHHcC------------------CCCCCHHHHHHHHhCceeeccceeEEECCCCCcc-ceeEEEEecCCC
Confidence 999999999985211 0135689999999999999999999998 89985 78999999 45
Q ss_pred C-cEEEEEEcCCCCcccccCCCccccCCccceEeCCC
Q 003054 295 G-ARGVGFWTPEKGLTQKLSSNSTTKSKLKPIIWPGD 330 (852)
Q Consensus 295 g-~~~vG~w~~~~g~~~~~~~~~~~~~~~~~i~Wpg~ 330 (852)
| ++.||.|++..+-. .+ .+...|+||++
T Consensus 386 g~~~~vg~~~~~~~~l-~~-------~~~~~i~W~~~ 414 (435)
T 1dp4_A 386 GAFRVVLNYNGTSQEL-MA-------VSEHKLYWPLG 414 (435)
T ss_dssp CCEEEEEEECTTTCCE-EE-------STTCCCCCTTS
T ss_pred CcEEEEEEecCCCceE-EE-------cCCceeeCCCC
Confidence 6 99999999876511 11 02367999987
No 11
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=3.8e-34 Score=319.28 Aligned_cols=279 Identities=19% Similarity=0.289 Sum_probs=225.7
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCCC-CCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHH
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLTS-IRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTD 80 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt~-~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~ 80 (852)
.+.+++++++.+++|+|+++++++.+++ .++||+||+.|++..|+.+++++++++||++|++||+|++||++..+.|++
T Consensus 82 ~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G~~~~~~~~~ 161 (384)
T 3qek_A 82 TPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAAQKKLET 161 (384)
T ss_dssp CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHHHHHHHH
Confidence 4678999999999999999999999997 578999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCcee-----------eee-------eecC-CCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCc
Q 003054 81 ALQAIDTRV-----------PYR-------SVIS-PLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLM 141 (852)
Q Consensus 81 ~l~~~g~~v-----------~~~-------~~~~-~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~ 141 (852)
++++.|+++ .+. +.++ ...++.|+..+|.+|+++++|+||++++.+++..++++|+++||+
T Consensus 162 ~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~ 241 (384)
T 3qek_A 162 LLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKSAAMLDMT 241 (384)
T ss_dssp HHC--------------CCSCCCCCCCCEEEEEEEECTTCSCCHHHHHHHHTSSCCEEEEECCHHHHHHHHHHHHHTTCS
T ss_pred HHHhccCccccccccccceeeeccccCcccceecccCCchhhHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHcCCc
Confidence 999999854 222 1111 113467899999999999999999999999999999999999999
Q ss_pred ccceEEEEcCccccccccCCchhhcccceEEEEEecCCCChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHH
Q 003054 142 NKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIGVGPHVPKTKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRAL 221 (852)
Q Consensus 142 ~~~~vwi~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~l 221 (852)
+++|+||+++.+.... ...+.++|+++++.+.++. .++++||||+++
T Consensus 242 ~~~~~~i~~~~~~~~~-----~~~~~~~g~lg~~~~~~~~----------------------------~~~~~YdAV~~~ 288 (384)
T 3qek_A 242 GAGYVWLVGEREISGS-----ALRYAPDGIIGLQLINGKN----------------------------ESAHISDAVAVV 288 (384)
T ss_dssp STTCEEECCSGGGSGG-----GGSSCCTTCEEEEETTTTC----------------------------HHHHHHHHHHHH
T ss_pred cCCeEEEEeccccccc-----cccccCCccEEEEEcCCCc----------------------------hhHHHHHHHHHH
Confidence 8899999999876432 1335689999999876532 267899999999
Q ss_pred HHHHHHhcccCcCccccccCCCCCCC-ccccccCChHHHHHHhhccce-eeeeeeEEee-cCccccceEEEEEcc-CCcE
Q 003054 222 AEAVEKAGITSFGFDKTNVSRNATDL-EAFGISQNGPKLLQALSSTRF-KGLTGDYIFV-DGQLQSSAFEIINVN-NGAR 297 (852)
Q Consensus 222 A~Al~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~al~~~~f-~GltG~v~f~-~G~~~~~~~~I~~~~-~g~~ 297 (852)
|+|++++......... ..+| .....|..+..|++.+.+++| +|++|++.|+ +|++....|+|+|++ ++++
T Consensus 289 a~Al~~~~~~~~~~~~------~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~~~~I~~~~~~~~~ 362 (384)
T 3qek_A 289 AQAIHELFEMENITDP------PRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQYSIMNLQNRKLV 362 (384)
T ss_dssp HHHHHHHHTSSSCCCC------CSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSCCEEEEEEETTEEE
T ss_pred HHHHHHHHhccCCCCC------CCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCcccEEEEEEcCCceE
Confidence 9999998643311111 1122 124467889999999999998 9999999998 999878999999999 7799
Q ss_pred EEEEEcCCCCcccccCCCccccCCccceEeCCC
Q 003054 298 GVGFWTPEKGLTQKLSSNSTTKSKLKPIIWPGD 330 (852)
Q Consensus 298 ~vG~w~~~~g~~~~~~~~~~~~~~~~~i~Wpg~ 330 (852)
.||+|++. .+. .+.+.|.||++
T Consensus 363 ~VG~w~~~-~l~----------i~~~~i~W~~~ 384 (384)
T 3qek_A 363 QVGIFNGS-YII----------QNDRKIIWPGG 384 (384)
T ss_dssp EEEEECSS-SEE----------ECSSCCCCSCC
T ss_pred EEEEEeCC-eEe----------eccceeeCCCC
Confidence 99999832 222 12467899975
No 12
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=1.5e-33 Score=329.47 Aligned_cols=311 Identities=20% Similarity=0.291 Sum_probs=249.2
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCCC-CCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHH
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLTS-IRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTD 80 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt~-~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~ 80 (852)
.+.+++++++.+++|+|+++++++.|++ .++|||||+.|+|..|+.+++++++++||++|++|++|++||+...+.|++
T Consensus 129 ~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~ 208 (555)
T 2e4u_A 129 VSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQ 208 (555)
T ss_dssp HHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCChHHHHHHHHHHHHHcCCeEEEEEEeeChHHHHHHHHHHH
Confidence 4678999999999999999999999998 479999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceeeeeeecCCCCChHHHHHHHHHhhc-CCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCcccccccc
Q 003054 81 ALQAIDTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRT 159 (852)
Q Consensus 81 ~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~ 159 (852)
++++.|++|++...++...+..|+..++.+|++ +++||||+++...++..++++|+++|+ +++||++++|......
T Consensus 209 ~~~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vIi~~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~ 285 (555)
T 2e4u_A 209 EARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESI 285 (555)
T ss_dssp HHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGG
T ss_pred HHHHCCccEEEEEEeCCCCChHHHHHHHHHHhccCCCCEEEEEcCHHHHHHHHHHHHHhcC---CeEEEEeccccccchh
Confidence 999999999999888764468899999999964 799999999999999999999999997 6899999988754322
Q ss_pred CCchhhcccceEEEEEecCCCChHHHH---------------HHHHHHHhccccCCCC----------cc-----cccch
Q 003054 160 LEPSVIDSMQGVIGVGPHVPKTKALEN---------------FRVRWKRNFLQENPSI----------VD-----VELNI 209 (852)
Q Consensus 160 ~~~~~~~~~~gv~~~~~~~~~~~~~~~---------------F~~~~~~~~~~~~~~~----------~~-----~~~~~ 209 (852)
.. ...+.++|++++.++..+.|.+++ |.+.|+++|++..+.. +. ..+..
T Consensus 286 ~~-~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~~p~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~ 364 (555)
T 2e4u_A 286 VK-GSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQES 364 (555)
T ss_dssp TT-TCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCT
T ss_pred hc-cchhhcceEEEEEeccCCCCcHHHHHhhCCcccCCCCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccc
Confidence 21 123567999999887655555444 5556888888743210 00 12556
Q ss_pred hhHhHhhHHHHHHHHHHHhcccCcCccccccCCCCCCCccccccCChHHHHH-Hhhcccee------eeeee-EEee-cC
Q 003054 210 FGLLAYDATRALAEAVEKAGITSFGFDKTNVSRNATDLEAFGISQNGPKLLQ-ALSSTRFK------GLTGD-YIFV-DG 280 (852)
Q Consensus 210 ~a~~aYDAv~~lA~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-al~~~~f~------GltG~-v~f~-~G 280 (852)
+++.+||||+++|+||++++....... ...|... ...++++|++ +|++++|+ |++|+ +.|| +|
T Consensus 365 ~~~~~YdAVya~A~AL~~~~~~~~~~~-------~~~~~~~-~~~~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~G 436 (555)
T 2e4u_A 365 KIMFVVNAVYAMAHALHKMQRTLCPQT-------TKLCDAM-KILDGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFG 436 (555)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCTTC-------SSCCGGG-TSCCHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTS
T ss_pred cchhhHHHHHHHHHHHHHHHhhhcCCC-------Ccccccc-CCCCcccccHHhHhceeecccccccCCCCCeEEEcCCC
Confidence 889999999999999999874211100 0112221 1357889999 99999999 99998 9998 99
Q ss_pred ccccceEEEEEcc--CC---cEEEEEEcCCCCcccccCCCccccCCccceEeCCCCCCCCCccc
Q 003054 281 QLQSSAFEIINVN--NG---ARGVGFWTPEKGLTQKLSSNSTTKSKLKPIIWPGDSTSDPKGWE 339 (852)
Q Consensus 281 ~~~~~~~~I~~~~--~g---~~~vG~w~~~~g~~~~~~~~~~~~~~~~~i~Wpg~~~~~p~~~~ 339 (852)
++ ...|+|+|++ +| ++.||.|++ .+. .+...|.|++ ..+|+..|
T Consensus 437 d~-~~~y~I~~~~~~~g~~~~~~VG~~~~--~l~----------i~~~~I~W~~--~~~P~S~C 485 (555)
T 2e4u_A 437 DG-MGRYNVFNLQQTGGKYSYLKVGHWAE--TLS----------LDVDSIHWSR--NSVPTSQC 485 (555)
T ss_dssp CC-CCCEEEEEEECTTSSCEEEEEEEESS--SEE----------CCGGGCCCTT--SSCCCCCS
T ss_pred Cc-cceEEEEEEEecCCcEEEEEEEEecc--eEE----------EeccccccCC--CCCcceee
Confidence 98 4789999996 44 899999984 232 1346789987 57888776
No 13
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=3.3e-33 Score=319.74 Aligned_cols=305 Identities=19% Similarity=0.266 Sum_probs=242.3
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCCC-CCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHH
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLTS-IRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTD 80 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt~-~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~ 80 (852)
.+.+++++++.+++|+|++++++|.|++ .++|||||+.|+|..|+.+++++++++||++|++|++|++||+...+.|++
T Consensus 128 ~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~ 207 (479)
T 3sm9_A 128 VSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQ 207 (479)
T ss_dssp HHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCcHHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHH
Confidence 4678999999999999999999999998 469999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceeeeeeecCCCCChHHHHHHH-HHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCcccccccc
Q 003054 81 ALQAIDTRVPYRSVISPLATDDQIEKEL-YKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRT 159 (852)
Q Consensus 81 ~l~~~g~~v~~~~~~~~~~~~~d~~~~l-~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~ 159 (852)
++++.|+||+..+.++...++.|+..++ ++++++++||||++++..++..++++++++|+. ++||++++|......
T Consensus 208 ~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~ 284 (479)
T 3sm9_A 208 EARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAASRANAS---FTWVASDGWGAQESI 284 (479)
T ss_dssp HHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHH
T ss_pred HHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEEEEEcChHHHHHHHHHHHHhCCE---EEEEEechhhcCccc
Confidence 9999999999999998665678999999 678899999999999999999999999999985 799999999753221
Q ss_pred CCchhhcccceEEEEEecCCCChHHHHHHH---------------HHHHhccccCCCCc----------c-----cccch
Q 003054 160 LEPSVIDSMQGVIGVGPHVPKTKALENFRV---------------RWKRNFLQENPSIV----------D-----VELNI 209 (852)
Q Consensus 160 ~~~~~~~~~~gv~~~~~~~~~~~~~~~F~~---------------~~~~~~~~~~~~~~----------~-----~~~~~ 209 (852)
... ....++|++++.++..+.|++++|.. .|+..|+|..+... . .....
T Consensus 285 ~~~-~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~ 363 (479)
T 3sm9_A 285 IKG-SEHVAYGAITLELASQPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQES 363 (479)
T ss_dssp HTT-CTTTTTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCT
T ss_pred ccc-ccccCceEEEEEeccCCCcchhhHhhccCcCcCCCCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCcccccc
Confidence 111 23568999999999999998888754 57888887543211 0 01123
Q ss_pred hhHhHhhHHHHHHHHHHHhcccCcCccccccCCCCCCCccccccCChHHHH-HHhhccceeee-------eeeEEee-cC
Q 003054 210 FGLLAYDATRALAEAVEKAGITSFGFDKTNVSRNATDLEAFGISQNGPKLL-QALSSTRFKGL-------TGDYIFV-DG 280 (852)
Q Consensus 210 ~a~~aYDAv~~lA~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~-~al~~~~f~Gl-------tG~v~f~-~G 280 (852)
.....||||+++|+||+++....... ....|... ...++.+|. ++|++++|.+. .+.+.|| +|
T Consensus 364 ~~~~vy~AVyavA~ALh~m~~~~~~~-------~~~~c~~~-~~~~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G 435 (479)
T 3sm9_A 364 KIMFVVNAVYAMAHALHKMQRTLCPN-------TTKLCDAM-KILDGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFG 435 (479)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTT-------CSSCCHHH-HSCCHHHHHHHTGGGCCEECTTC-----CCEECCCTTC
T ss_pred chhhHHHHHHHHHHHHHHHHHhhcCC-------CCcCCCCC-CCcChHHHHHHHhcceeeccccCccccCCCeEEECCCC
Confidence 34689999999999999985421110 00112221 134678999 99999999998 5568898 99
Q ss_pred ccccceEEEEEcc--CC---cEEEEEEcCCCCcccccCCCccccCCccceEeCCCC
Q 003054 281 QLQSSAFEIINVN--NG---ARGVGFWTPEKGLTQKLSSNSTTKSKLKPIIWPGDS 331 (852)
Q Consensus 281 ~~~~~~~~I~~~~--~g---~~~vG~w~~~~g~~~~~~~~~~~~~~~~~i~Wpg~~ 331 (852)
+. ...|+|+||+ +| ++.||.|+ ..+. .+...|.|||+.
T Consensus 436 ~~-~~~YdI~n~~~~~~~~~~~~VG~~~--~~l~----------i~~~~I~W~~~~ 478 (479)
T 3sm9_A 436 DG-MGRYNVFNFQNVGGKYSYLKVGHWA--ETLS----------LDVNSIHWSRNS 478 (479)
T ss_dssp BC-CCCEEEEEEEESSSCEEEEEEEEES--SSEE----------ECGGGCCCC---
T ss_pred Cc-ccceEEEEEEECCCcEEEEEEEEEe--ceEE----------EecceeEeCCCC
Confidence 98 6889999998 45 78999998 2232 234678999863
No 14
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=4.6e-34 Score=314.91 Aligned_cols=271 Identities=19% Similarity=0.248 Sum_probs=217.4
Q ss_pred HHHHhcCCCCccEEeeecCCC-CCCC-CCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHH
Q 003054 5 FIIQLGNKSQVPILSFSATSP-SLTS-IRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDAL 82 (852)
Q Consensus 5 ~v~~i~~~~~vP~Is~~ats~-~lt~-~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l 82 (852)
.++.+++.++||+||+++++| .|++ .++|||||+.|+|..|+.++++++++|||++|++||+|+ ...+.|.+.+
T Consensus 81 ~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~----~g~~~~~~~l 156 (364)
T 3qel_B 81 ILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF----PGYQDFVNKI 156 (364)
T ss_dssp HHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC----TTHHHHHHHH
T ss_pred HHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCC----ccHHHHHHHH
Confidence 388999999999999999998 8987 579999999999999999999999999999999999874 3445666666
Q ss_pred HhC--C--ceeeeeeecCCCCChHHHHHHH-HHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCcccccc
Q 003054 83 QAI--D--TRVPYRSVISPLATDDQIEKEL-YKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLL 157 (852)
Q Consensus 83 ~~~--g--~~v~~~~~~~~~~~~~d~~~~l-~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~ 157 (852)
++. | +|+.....++.+.++.|+...+ ++|++++++|||++++.+.+..++++|+++||+.++|+||+++.+....
T Consensus 157 ~~~~~~~~ici~~~~~i~~~~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI~t~~~~~~~ 236 (364)
T 3qel_B 157 RSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDT 236 (364)
T ss_dssp HHHHHTCSSCCEEEEEEEECTTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEEECHHHHCST
T ss_pred HHHhhccccceEEEEEEccCCCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEecccccCc
Confidence 654 4 4777766665544556788888 7999999999999999999999999999999999999999999875444
Q ss_pred ccCCchhhcccceEEEEEecCCCChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccCcCccc
Q 003054 158 RTLEPSVIDSMQGVIGVGPHVPKTKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDK 237 (852)
Q Consensus 158 ~~~~~~~~~~~~gv~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~~~ 237 (852)
+... .+..+|+++++++. |++ .+.+++||||+++|+|++++.......
T Consensus 237 ~~~~---~~~~~g~~~~~~~~------------W~~---------------~~~~~~yDaV~~~A~A~~~~~~~~~~i-- 284 (364)
T 3qel_B 237 DTVP---SEFPTGLISVSYDE------------WDY---------------GLPARVRDGIAIITTAASDMLSEHSFI-- 284 (364)
T ss_dssp TCCC---TTSCTTCEECCBCT------------TTS---------------CHHHHHHHHHHHHHHHHHHHHTTTSCC--
T ss_pred cccc---ccCCCceEEEeecc------------chh---------------hHHHHHHHHHHHHHHHHHHHHhccCCC--
Confidence 3322 23568898887653 221 245789999999999999876432111
Q ss_pred cccCCCCCCCcccc--ccCChHHHHHHhhccceeeeeeeEEee-cCccccceEEEEEcc--CCcEEEEEEcCCCCccccc
Q 003054 238 TNVSRNATDLEAFG--ISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN--NGARGVGFWTPEKGLTQKL 312 (852)
Q Consensus 238 ~~~~~~~~~~~~~~--~~~~g~~l~~al~~~~f~GltG~v~f~-~G~~~~~~~~I~~~~--~g~~~vG~w~~~~g~~~~~ 312 (852)
.....+|...+ .|.+|..|.++|++++|+|+ ++.|+ +|++.++.|+|+|++ +|+++||+|++ .+|.
T Consensus 285 ---~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~~~VG~W~~-~~L~--- 355 (364)
T 3qel_B 285 ---PEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKWERVGKWKD-KSLQ--- 355 (364)
T ss_dssp ---CCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCEEEEEEECS-SCEE---
T ss_pred ---CCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCcEEEEEECC-CeEE---
Confidence 11223444443 47899999999999999998 88997 999988999999998 57999999984 3443
Q ss_pred CCCccccCCccceEeCC
Q 003054 313 SSNSTTKSKLKPIIWPG 329 (852)
Q Consensus 313 ~~~~~~~~~~~~i~Wpg 329 (852)
++.++||+
T Consensus 356 ---------~~~~~Wp~ 363 (364)
T 3qel_B 356 ---------MKYYVWPR 363 (364)
T ss_dssp ---------ESCSSCCC
T ss_pred ---------eCcCCCCC
Confidence 46788985
No 15
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=2.4e-32 Score=313.93 Aligned_cols=313 Identities=20% Similarity=0.287 Sum_probs=238.9
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCCC-CCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHH
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLTS-IRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTD 80 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt~-~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~ 80 (852)
.+.+++++++.+++|+|++++++|.|++ .++|||||+.|+|..|+.+++++++++||++|++|++|++||+...+.|++
T Consensus 140 ~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~ 219 (496)
T 3ks9_A 140 VAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKE 219 (496)
T ss_dssp HHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcceeEECCCcCCccccCccCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHH
Confidence 4678999999999999999999999998 469999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceeeeeeecCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCccccccc
Q 003054 81 ALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLR 158 (852)
Q Consensus 81 ~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~ 158 (852)
++++.|+||++.+.++...++.|+..++.+|+++ +++||++++...++..++++++++|+..+ ++||++++|.....
T Consensus 220 ~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~k-~~~i~s~~w~~~~~ 298 (496)
T 3ks9_A 220 LAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVGE-FSLIGSDGWADRDE 298 (496)
T ss_dssp HHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTTTCEEEEECCHHHHHHHHHHHHHHTCCSC-CEEEECTTTTTCHH
T ss_pred HHHHcCceEEEEEEECCCCCHHHHHHHHHHHHhccCceEEEEEecChHHHHHHHHHHHHhCCCCc-EEEEEechhccccc
Confidence 9999999999998887666789999999999985 78999999999999999999999999543 67999999875332
Q ss_pred cCCchhhcccceEEEEEecCCCChHHHHHHH---------------HHHHhccccCCCCc--------------cc----
Q 003054 159 TLEPSVIDSMQGVIGVGPHVPKTKALENFRV---------------RWKRNFLQENPSIV--------------DV---- 205 (852)
Q Consensus 159 ~~~~~~~~~~~gv~~~~~~~~~~~~~~~F~~---------------~~~~~~~~~~~~~~--------------~~---- 205 (852)
... .....++|++++.++.++.|.+++|.. .|+..|+|..+... ..
T Consensus 299 ~~~-~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~ 377 (496)
T 3ks9_A 299 VIE-GYEVEANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENY 377 (496)
T ss_dssp HHT-TCHHHHTTCEEEEECCCCCHHHHHHHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTC
T ss_pred ccc-ccccccCceEEEeccCCcCcchHhHhccCCcCCCCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccc
Confidence 222 133568999999999999999998854 47888887543210 00
Q ss_pred ccchhhHhHhhHHHHHHHHHHHhcccCcCccccccCCCCCCCccccccCChHHHHHHhhccceeeeeee-EEee-cCccc
Q 003054 206 ELNIFGLLAYDATRALAEAVEKAGITSFGFDKTNVSRNATDLEAFGISQNGPKLLQALSSTRFKGLTGD-YIFV-DGQLQ 283 (852)
Q Consensus 206 ~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~al~~~~f~GltG~-v~f~-~G~~~ 283 (852)
.........|+||+++|+||+++........ . ..|.... ...+.+|.+.|++++|.+.+|+ +.|| +|+.
T Consensus 378 ~~~~~~~~vy~AVyavAhALh~m~~~~~~~~----~---~~c~~~~-~~~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~- 448 (496)
T 3ks9_A 378 VQDSKMGFVINAIYAMAHGLQNMHHALCPGH----V---GLCDAMK-PIDGSKLLDFLIKSSFIGVSGEEVWFDEKGDA- 448 (496)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHSTTC----S---SCCGGGS-SCCHHHHHHHHHTCEEECTTSCEEECCTTSCC-
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhccCCCC----C---CCCcCCC-CCCHHHHHHHHHhcCCcCCCCCEEEECCCCCc-
Confidence 0011224699999999999999863221110 1 1222221 2367899999999999999996 7888 9998
Q ss_pred cceEEEEEcc---CC---cEEEEEEcCCCCcccccCCCccccCCccceEeCCCCCCCCCc
Q 003054 284 SSAFEIINVN---NG---ARGVGFWTPEKGLTQKLSSNSTTKSKLKPIIWPGDSTSDPKG 337 (852)
Q Consensus 284 ~~~~~I~~~~---~g---~~~vG~w~~~~g~~~~~~~~~~~~~~~~~i~Wpg~~~~~p~~ 337 (852)
...|+|+||+ +| ++.||.|++ ..+. + +...| |.++...+|+|
T Consensus 449 ~~~YdI~n~~~~~~~~~~~~~VG~~~~-~~l~--i--------~~~~i-w~~~~~~vP~~ 496 (496)
T 3ks9_A 449 PGRYDIMNLQYTEANRYDYVHVGTWHE-GVLN--I--------DDYKI-QMNKSGLVPRG 496 (496)
T ss_dssp CCEEEEEEEEECC--CEEEEEEEEEET-TEEE--E--------CTTTC------------
T ss_pred cceEEEEEEEECCCCCEEEEEEEEEeC-CeEE--E--------ehhhc-ccCCCCCCCCC
Confidence 5799999998 44 789999973 2222 1 22345 88887788875
No 16
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=99.97 E-value=4.9e-32 Score=310.70 Aligned_cols=291 Identities=21% Similarity=0.328 Sum_probs=206.2
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCCC-CCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHH
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLTS-IRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTD 80 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt~-~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~ 80 (852)
.+.+++++++.+++|+|++++++|.|++ .++|||||+.|+|..|+.+++++++++||++|++|++|++||+...+.|++
T Consensus 129 ~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~ 208 (481)
T 3mq4_A 129 VSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQ 208 (481)
T ss_dssp HHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCchHHHHHHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHH
Confidence 4678999999999999999999999998 579999999999999999999999999999999999999999999999999
Q ss_pred HHHh-CCceeeeeeecCCCCChH--HHHHHHHHhh-cCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCccccc
Q 003054 81 ALQA-IDTRVPYRSVISPLATDD--QIEKELYKLF-TMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNL 156 (852)
Q Consensus 81 ~l~~-~g~~v~~~~~~~~~~~~~--d~~~~l~~l~-~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~ 156 (852)
++++ .|++|++.+.++...... |+..++.+++ ++++||||+++...++..++++++++|+.. +++||++++|...
T Consensus 209 ~~~~~~Gi~va~~~~i~~~~~~~~~d~~~~l~~i~~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~~w~~~ 287 (481)
T 3mq4_A 209 ISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQVG-HFLWVGSDSWGSK 287 (481)
T ss_dssp CC---CCCEECCCCCCCCC------CCSHHHHCCCCC----CEEECCCSSHHHHHC-----------CCCEEEC------
T ss_pred HHHHhCCEEEEEEEEcCCCCccchHHHHHHHHHHHhcCCCEEEEEEEChHHHHHHHHHHHHccCCc-ceEEEEECccccc
Confidence 9885 799999988887553334 8899999998 689999999999999999999999999954 3899999999754
Q ss_pred cccCCchhhcccceEEEEEecCCCChHHHHHHH---------------HHHHhccccCCCC--------------ccc--
Q 003054 157 LRTLEPSVIDSMQGVIGVGPHVPKTKALENFRV---------------RWKRNFLQENPSI--------------VDV-- 205 (852)
Q Consensus 157 ~~~~~~~~~~~~~gv~~~~~~~~~~~~~~~F~~---------------~~~~~~~~~~~~~--------------~~~-- 205 (852)
..... .....++|++++.++..+.|.+++|.. .|+..|+|..+.. +..
T Consensus 288 ~~~~~-~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~ 366 (481)
T 3mq4_A 288 INPLH-QHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGK 366 (481)
T ss_dssp ------------CCCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHHTCCC------------CCCSCCCTTT
T ss_pred ccccc-ccchhhccEEEEecCcCccccHHHHhhcCCcCcCCCCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCc
Confidence 32222 234568999999999999999988754 4777887754221 000
Q ss_pred ----ccchhhHhHhhHHHHHHHHHHHhcccCcCccccccCCCCCCCccccccCChHHHHHHhhccceeeeee-eEEee-c
Q 003054 206 ----ELNIFGLLAYDATRALAEAVEKAGITSFGFDKTNVSRNATDLEAFGISQNGPKLLQALSSTRFKGLTG-DYIFV-D 279 (852)
Q Consensus 206 ----~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~al~~~~f~GltG-~v~f~-~ 279 (852)
.........||||+++|+||+++........ . ..|.... ..++.+|.+.|++++|.+.+| .+.|| +
T Consensus 367 ~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~~----~---~~c~~~~-~~~~~qL~~~Lk~v~F~~~~G~~v~fd~~ 438 (481)
T 3mq4_A 367 DSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCADY----R---GVCPEME-QAGGKKLLKYIRNVNFNGSAGTPVMFNKN 438 (481)
T ss_dssp SSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHH-TSCHHHHHHHHHTCEEECTTSSEEECCTT
T ss_pred CCcccccchhhhHHHHHHHHHHHHHHHHHhhCCCC----C---CCCCCCC-CcCHHHHHHHHhcceeecCCCCEEEECCC
Confidence 1113455799999999999999864221100 0 1222211 236789999999999999999 68998 9
Q ss_pred CccccceEEEEEcc---CC---cEEEEEEc
Q 003054 280 GQLQSSAFEIINVN---NG---ARGVGFWT 303 (852)
Q Consensus 280 G~~~~~~~~I~~~~---~g---~~~vG~w~ 303 (852)
|+. ...|+|+||+ +| ++.||.|+
T Consensus 439 Gd~-~~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 439 GDA-PGRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp SCC-CCEEEEEEEC-----CCCEEEEEEEE
T ss_pred CCC-ceeEEEEEEEECCCCcEEEEEEEEEc
Confidence 998 6899999998 33 68899998
No 17
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=99.96 E-value=5.1e-29 Score=275.84 Aligned_cols=263 Identities=19% Similarity=0.260 Sum_probs=228.8
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHH-HHcCCcEEEEEEE-eCCcccccHHHHH
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAII-KAFGWREAVPIYV-DNQYGEEMIPSLT 79 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l-~~~gw~~vaii~~-d~~~G~~~~~~l~ 79 (852)
.+.++++++++++||+|++.++++.+++ .+||+||+.|++..++.++++++ +++||++|++||. +++||....+.++
T Consensus 93 ~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~ 171 (366)
T 3td9_A 93 HSLAIAPIAEENKVPMVTPASTNPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGLSNFFI 171 (366)
T ss_dssp HHHHHHHHHHHTTCCEEESSCCCGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCeEEecCCCCccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHHHHHHH
Confidence 3567889999999999999999988875 57999999999999999999998 6689999999986 7889999999999
Q ss_pred HHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCcccccccc
Q 003054 80 DALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRT 159 (852)
Q Consensus 80 ~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~ 159 (852)
+++++.|++++... ++.+ ..|+..++.++++.+||+|++.++..++..+++++++.|+..+ |++++++....
T Consensus 172 ~~~~~~G~~v~~~~-~~~~--~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~~-- 243 (366)
T 3td9_A 172 NKFTELGGQVKRVF-FRSG--DQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTGY---ILAGDGADAPE-- 243 (366)
T ss_dssp HHHHHTTCEEEEEE-ECTT--CCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCCSE---EEECGGGCSTH--
T ss_pred HHHHHCCCEEEEEE-eCCC--CccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCCce---EEeeCCcCCHH--
Confidence 99999999999887 7754 6789999999999999999999999999999999999999766 77777664321
Q ss_pred CCchhhcccceEEEEEecCCC---ChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccCcCcc
Q 003054 160 LEPSVIDSMQGVIGVGPHVPK---TKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFD 236 (852)
Q Consensus 160 ~~~~~~~~~~gv~~~~~~~~~---~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~~ 236 (852)
........++|++....+.++ .+..++|.++|+++|+. .|+.+++.+|||++++++|+++++
T Consensus 244 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~--------~p~~~~~~~yda~~~~~~al~~ag------- 308 (366)
T 3td9_A 244 LIEIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKYGK--------EPAALNALGYDAYMVLLDAIERAG------- 308 (366)
T ss_dssp HHHHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHCC--------CCchhHHHHHHHHHHHHHHHHHhC-------
Confidence 111234567899888877664 68999999999999987 689999999999999999999998
Q ss_pred ccccCCCCCCCccccccCChHHHHHHhhccc-eeeeeeeEEee-cCccccceEEEEEccCC-cEEEEEEcCC
Q 003054 237 KTNVSRNATDLEAFGISQNGPKLLQALSSTR-FKGLTGDYIFV-DGQLQSSAFEIINVNNG-ARGVGFWTPE 305 (852)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~g~~l~~al~~~~-f~GltG~v~f~-~G~~~~~~~~I~~~~~g-~~~vG~w~~~ 305 (852)
..+++.|+++|++++ |+|++|++.|+ +|++. ..+.|+++++| ++.|+.|++.
T Consensus 309 ----------------~~~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~~ 363 (366)
T 3td9_A 309 ----------------SFDREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNGSVDFEAVINPD 363 (366)
T ss_dssp ----------------SCCHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETTEEEEEEEECGG
T ss_pred ----------------CCCHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECCEEEEEEecChh
Confidence 356899999999998 99999999998 89985 45889999955 9999999874
No 18
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=99.96 E-value=9.3e-29 Score=274.23 Aligned_cols=268 Identities=13% Similarity=0.168 Sum_probs=225.1
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHH
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDA 81 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~ 81 (852)
.+.++++++++++||+|+++++++.++.. .||+||+.+++..++.++++++++.||++|++|+.|++||++..+.+++.
T Consensus 84 ~~~a~~~~~~~~~vp~i~~~a~~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~~~~~~ 162 (371)
T 4f06_A 84 NAMAVAPLLQEAKVPMVVMNAATSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDAETAFKKT 162 (371)
T ss_dssp HHHHHGGGHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhhcCCccccccccchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccchhHHHHHHHH
Confidence 46789999999999999999999999854 69999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeC-hhhHHHHHHHHHHcCCcccceEEEEcCccccccccC
Q 003054 82 LQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML-PSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTL 160 (852)
Q Consensus 82 l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~-~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~~ 160 (852)
+++.|++|+....++.+ +.||+++|.+|++++||+|++... .+++..+++++++.|+...++.++.++........
T Consensus 163 ~~~~g~~vv~~~~~~~~--~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~- 239 (371)
T 4f06_A 163 FEAEGGKVVEAVRMPLS--TTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMSTGDVVTEPDL- 239 (371)
T ss_dssp HHHTTCEEEEEEEECTT--CCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEEGGGGCGGGH-
T ss_pred HHhcCCceEEEEecCcc--cccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEecccCCHHHH-
Confidence 99999999999999855 778999999999999999988765 57888999999999998777767665543322111
Q ss_pred CchhhcccceEEEEEecCC--CChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccCcCcccc
Q 003054 161 EPSVIDSMQGVIGVGPHVP--KTKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKT 238 (852)
Q Consensus 161 ~~~~~~~~~gv~~~~~~~~--~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~~~~ 238 (852)
....+..+|++...++.+ ++|..++|+++|+++|+... .|+.+++.+|||++++++|+++++.
T Consensus 240 -~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~------~~~~~a~~~Yda~~~l~~Ai~~~ag-------- 304 (371)
T 4f06_A 240 -PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAKLD------EVTMTSVAAYDGARLIYKMIEATSG-------- 304 (371)
T ss_dssp -HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCCGG------GCCHHHHHHHHHHHHHHHHHHHTTT--------
T ss_pred -HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcCCCC------CccchHHHHHHHHHHHHHHHHHhcC--------
Confidence 123456788888877765 47899999999999997521 5788999999999999999996431
Q ss_pred ccCCCCCCCccccccCChHHHHHHhhccceeeeeeeEEee-cCccccceEEEEEcc--CC---cEEEEEE
Q 003054 239 NVSRNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN--NG---ARGVGFW 302 (852)
Q Consensus 239 ~~~~~~~~~~~~~~~~~g~~l~~al~~~~f~GltG~v~f~-~G~~~~~~~~I~~~~--~g---~~~vG~w 302 (852)
+.++++++++|++++|+|++|++.|+ +++.....+.|.+++ +| ++.++.+
T Consensus 305 --------------~~d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~~~dGk~v~~~~~~~ 360 (371)
T 4f06_A 305 --------------KSDPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVEKVDGKLINRELETF 360 (371)
T ss_dssp --------------SCCHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred --------------CCCHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEEecCCEEEEEEEEEE
Confidence 45789999999999999999999998 665556677788887 66 3445444
No 19
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=99.96 E-value=1.1e-28 Score=275.50 Aligned_cols=269 Identities=16% Similarity=0.163 Sum_probs=225.4
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCCC-CCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHH
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLTS-IRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTD 80 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt~-~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~ 80 (852)
.+.++++++++++||+|+++++++.++. ..+||+||+.|++..++.++++++.++||++|++|+.|++||+...+.+++
T Consensus 85 ~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~ 164 (387)
T 3i45_A 85 VGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVARFKE 164 (387)
T ss_dssp HHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHhHHHHHHHHH
Confidence 3567889999999999999999999874 678999999999999999999999999999999999999999999999999
Q ss_pred HHHhC--CceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCccc--cc
Q 003054 81 ALQAI--DTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMT--NL 156 (852)
Q Consensus 81 ~l~~~--g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~--~~ 156 (852)
++++. |++++....++.+ ..|+.+++.++++.+||+|++++...++..++++++++|+..+ +++.+.... ..
T Consensus 165 ~l~~~~~g~~vv~~~~~~~~--~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~--~~i~~~~~~~~~~ 240 (387)
T 3i45_A 165 LLLAARPEVTFVAEQWPALY--KLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAG--RQVVSMLTGEPEY 240 (387)
T ss_dssp HHHHHCTTCEEEEEECCCTT--CCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSSTT--CEEEEEEEESHHH
T ss_pred HHHHhCCCcEEEeeecCCCC--CcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCCC--CeEEeecCCChHH
Confidence 99998 8999888777744 6689999999999999999999999999999999999999443 344433221 11
Q ss_pred cccCCchhhcccceEEEEE-ecC-CCChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccCcC
Q 003054 157 LRTLEPSVIDSMQGVIGVG-PHV-PKTKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFG 234 (852)
Q Consensus 157 ~~~~~~~~~~~~~gv~~~~-~~~-~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~~~ 234 (852)
+... ..+..+|++... ++. +++|..++|+++|+++|+. .|+.+++.+|||++++++|+++++
T Consensus 241 ~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--------~p~~~~~~~Yda~~~~a~Al~~ag----- 304 (387)
T 3i45_A 241 LNPL---KDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARWKE--------DPFVGSLVGYNTLTAMAVAFEKAG----- 304 (387)
T ss_dssp HGGG---GGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHh---hhhccCceEEecccccCCCCHHHHHHHHHHHHHHCC--------CCCcHHHHHHHHHHHHHHHHHHhC-----
Confidence 2111 123468877653 233 5789999999999999987 688999999999999999999998
Q ss_pred ccccccCCCCCCCccccccCChHHHHHHhhccceeeeeeeEEee--cCccccceEEEEEcc--CCcEEEEEEcCCCCcc
Q 003054 235 FDKTNVSRNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV--DGQLQSSAFEIINVN--NGARGVGFWTPEKGLT 309 (852)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~g~~l~~al~~~~f~GltG~v~f~--~G~~~~~~~~I~~~~--~g~~~vG~w~~~~g~~ 309 (852)
+.++++|+++|++++|+|++|++.|+ +++. .....|.+++ +|.+.++.|.+..|..
T Consensus 305 ------------------~~~~~~v~~al~~~~~~g~~G~i~f~~~~~~~-~~~~~i~~~~~~~g~~~i~~w~~~~~~~ 364 (387)
T 3i45_A 305 ------------------GTESETLVETLKDMAFSTPMGPLSFRASDHQS-TMGAWVGRTALRDGKGVMVDWRYVDGGS 364 (387)
T ss_dssp ------------------SCCHHHHHHHTTTCEEEETTEEEEBCTTTCBB-CCCEEEEEEEEETTEEEEEEEEEECGGG
T ss_pred ------------------CCCHHHHHHHHhcCCCcCCCCCeEEcCCCCcc-ccceeEEEEEeeCCceeEEeeEEeCchh
Confidence 45689999999999999999999997 4444 5556677765 7799999998766654
No 20
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=99.96 E-value=1.2e-28 Score=273.68 Aligned_cols=255 Identities=14% Similarity=0.152 Sum_probs=222.3
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCCC-CCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHH
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLTS-IRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTD 80 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt~-~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~ 80 (852)
.+.+++++++++++|+|+++++++.+++ ..+||+||+.+++..+++++++++.++||++|++|+.|++||+...+.+++
T Consensus 83 ~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~ 162 (375)
T 3i09_A 83 TALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEKNTAD 162 (375)
T ss_dssp HHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHHHHHHHHHHH
Confidence 3567889999999999999999999986 468999999999999999999999899999999999999999999999999
Q ss_pred HHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCccccccccC
Q 003054 81 ALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTL 160 (852)
Q Consensus 81 ~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~~ 160 (852)
++++.|++|+....++.+ +.|+.+++.++++.+||+|++.++..++..++++++++|+..+. .+++.+.+...+...
T Consensus 163 ~~~~~G~~v~~~~~~~~~--~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~i~g~~~~~~~~~~~ 239 (375)
T 3i09_A 163 VVKANGGKVLGEVRHPLS--ASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM-KLAALLMFINDVHAL 239 (375)
T ss_dssp HHHHTTCEEEEEEEECTT--CSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC-EEEESSCCHHHHHHH
T ss_pred HHHHcCCEEeeeeeCCCC--CccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc-eEEecccchhhHhhh
Confidence 999999999988888754 67899999999999999999999999999999999999998776 455554444322211
Q ss_pred CchhhcccceEEEEEecCCC-ChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccCcCccccc
Q 003054 161 EPSVIDSMQGVIGVGPHVPK-TKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKTN 239 (852)
Q Consensus 161 ~~~~~~~~~gv~~~~~~~~~-~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~~~~~ 239 (852)
..+.++|++...++.++ +|..++|.++|+++|+. .|+.+++.+|||++++++|+++++
T Consensus 240 ---~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g~--------~p~~~a~~~Yda~~~~~~Al~~ag---------- 298 (375)
T 3i09_A 240 ---GLETTQGLVLTDSWYWNRDQASRQWAQRYFAKMKK--------MPSSLQAADYSSVTTYLKAVQAAG---------- 298 (375)
T ss_dssp ---CHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHHHHHHHHHT----------
T ss_pred ---ChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHHCC--------CCcHHHHHHHHHHHHHHHHHHHhC----------
Confidence 22457898888777654 68999999999999987 789999999999999999999998
Q ss_pred cCCCCCCCccccccCChHHHHHHhhccceeeeeeeEEee-cCccccceEEEEEccC
Q 003054 240 VSRNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVNN 294 (852)
Q Consensus 240 ~~~~~~~~~~~~~~~~g~~l~~al~~~~f~GltG~v~f~-~G~~~~~~~~I~~~~~ 294 (852)
+.++++|+++|++++|+|++|.+.|+ +|++. ..+.|+++++
T Consensus 299 -------------~~~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~-~~~~i~~v~~ 340 (375)
T 3i09_A 299 -------------STDSDKVMAQLKKMKIDDFYAKGYIRTDGSMI-HDMYLMEVKK 340 (375)
T ss_dssp -------------SCCHHHHHHHHTTSCEESSSCEEEECTTSBEE-CCEEEEEECC
T ss_pred -------------CCCHHHHHHHHhCCCccCCCCceEECCCCCee-eeeEEEEEec
Confidence 35689999999999999999999998 99985 5677888873
No 21
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=99.96 E-value=2.6e-28 Score=269.03 Aligned_cols=264 Identities=17% Similarity=0.167 Sum_probs=226.9
Q ss_pred hhHHHHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHH-HHcCCcEEEEEEEeCCcccccHHHHHHH
Q 003054 3 TNFIIQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAII-KAFGWREAVPIYVDNQYGEEMIPSLTDA 81 (852)
Q Consensus 3 a~~v~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l-~~~gw~~vaii~~d~~~G~~~~~~l~~~ 81 (852)
+.++++++++.+||+|++.++++.+++..+||+||+.|++..++.++++++ +++||++|++|+.|++||+...+.++++
T Consensus 82 ~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~ 161 (356)
T 3ipc_A 82 SIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETKKA 161 (356)
T ss_dssp HHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHHHH
Confidence 567788999999999999999999988778999999999999999999976 5679999999999999999999999999
Q ss_pred HHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCccccccccCC
Q 003054 82 LQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLE 161 (852)
Q Consensus 82 l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~~~ 161 (852)
+++.|++++....++.+ ..|+...+.++++.+||+|+++++..++..++++++++|+..+ |++++++.... . .
T Consensus 162 l~~~g~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~~-~-~ 234 (356)
T 3ipc_A 162 ANAAGVTEVMYEGVNVG--DKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKAK---LVSGDGIVSNE-L-A 234 (356)
T ss_dssp HHHTTCCCSEEEECCTT--CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCCE---EEECGGGCSHH-H-H
T ss_pred HHHcCCEEEEEEeeCCC--CCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCCc---EEEeccccCHH-H-H
Confidence 99999999888777644 6789999999999999999999999999999999999999776 77776655321 1 1
Q ss_pred chhhcccceEEEEEecCC-CChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccCcCcccccc
Q 003054 162 PSVIDSMQGVIGVGPHVP-KTKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKTNV 240 (852)
Q Consensus 162 ~~~~~~~~gv~~~~~~~~-~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~~~~~~ 240 (852)
.......+|++...++.+ ..|..++|.++|+++ +. .|+.+++.+|||++++++|+++++
T Consensus 235 ~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~-~~--------~p~~~~~~~yda~~~~~~al~~ag----------- 294 (356)
T 3ipc_A 235 SIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA-GF--------NPEAYTLYSYAAMQAIAGAAKAAG----------- 294 (356)
T ss_dssp HHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT-TC--------CCCTTHHHHHHHHHHHHHHHHHHT-----------
T ss_pred HHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc-CC--------CcchhHHHHHHHHHHHHHHHHHhC-----------
Confidence 113356789888777665 468899999999998 65 678899999999999999999998
Q ss_pred CCCCCCCccccccCChHHHHHHhhccceeeeeeeEEee-cCccccceEEEEEcc-C--C-cEEEEEEcCC
Q 003054 241 SRNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN-N--G-ARGVGFWTPE 305 (852)
Q Consensus 241 ~~~~~~~~~~~~~~~g~~l~~al~~~~f~GltG~v~f~-~G~~~~~~~~I~~~~-~--g-~~~vG~w~~~ 305 (852)
+.+++.|+++|++.+|+|++|++.|+ +|++....+.|++++ + | |+.+..|.+.
T Consensus 295 ------------~~~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 295 ------------SVEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp ------------CCCHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC----
T ss_pred ------------CCCHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEeccccc
Confidence 34689999999999999999999998 999877789999999 5 7 9999988764
No 22
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=99.95 E-value=5.6e-28 Score=268.85 Aligned_cols=255 Identities=15% Similarity=0.084 Sum_probs=220.1
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCCC-CCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHH
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLTS-IRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTD 80 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt~-~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~ 80 (852)
.+.++++++++++||+|+++++++.+++ ..+||+||+.+++..+++++++++.++||++|++|+.|++||+...+.+++
T Consensus 85 ~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~ 164 (379)
T 3n0w_A 85 TALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMNAAIRR 164 (379)
T ss_dssp HHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchhHHHHHHHHH
Confidence 4567889999999999999999999987 468999999999999999999999889999999999999999999999999
Q ss_pred HHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCccc-ccccc
Q 003054 81 ALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMT-NLLRT 159 (852)
Q Consensus 81 ~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~-~~~~~ 159 (852)
++++.|++|+....++.+ +.|+.+++.++++.+||+|++.+...++..++++++++|+..+.+ ++.+.++. ..+..
T Consensus 165 ~~~~~G~~v~~~~~~~~~--~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~ 241 (379)
T 3n0w_A 165 ELTAGGGQIVGSVRFPFE--TQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKTQ-KVGGMIDILTDVKS 241 (379)
T ss_dssp HHHHHTCEEEEEEEECTT--CCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSSC-EEECCBCCHHHHHH
T ss_pred HHHHcCCEEEEEEeCCCC--CCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCCc-EEEecccchHHHHh
Confidence 999999999988888754 678999999999999999999999999999999999999977644 34444333 22211
Q ss_pred CCchhhcccceEEEEEecCCC-ChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccCcCcccc
Q 003054 160 LEPSVIDSMQGVIGVGPHVPK-TKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKT 238 (852)
Q Consensus 160 ~~~~~~~~~~gv~~~~~~~~~-~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~~~~ 238 (852)
. ..+.++|++...++.++ +|..++|+++|+++|+. .|+.+++.+|||++++++|+++++
T Consensus 242 ~---~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g~--------~p~~~~~~~Yda~~~~~~Al~~ag--------- 301 (379)
T 3n0w_A 242 A---GLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKMGK--------MPTNNQAGGYSAALQYLKAVNAIG--------- 301 (379)
T ss_dssp H---CHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHHHHHHHHHT---------
T ss_pred h---CHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHHCC--------CCChHHHHHHHHHHHHHHHHHHhC---------
Confidence 1 22457899888777654 68999999999999987 789999999999999999999998
Q ss_pred ccCCCCCCCccccccCChHHHHHHhhccceeeeeee-EEee-cCccccceEEEEEccC
Q 003054 239 NVSRNATDLEAFGISQNGPKLLQALSSTRFKGLTGD-YIFV-DGQLQSSAFEIINVNN 294 (852)
Q Consensus 239 ~~~~~~~~~~~~~~~~~g~~l~~al~~~~f~GltG~-v~f~-~G~~~~~~~~I~~~~~ 294 (852)
+.++++|+++|++++|+|+.|. +.|+ +|+.. ..+.|+++++
T Consensus 302 --------------~~~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~~-~~~~i~~~~~ 344 (379)
T 3n0w_A 302 --------------SKDPQKVFAYLKTIKFDDAVTRHGTLRPGGRLV-RDMYLVRAKK 344 (379)
T ss_dssp --------------CCCHHHHHHHHTTCCBCSSSCCSBEECTTSBEE-CCEEEEEECC
T ss_pred --------------CCCHHHHHHHHhcCCccccCCCceeECCCCCcc-cceEEEEEEc
Confidence 4568999999999999999886 8998 89874 6678888873
No 23
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=99.95 E-value=2.4e-27 Score=263.22 Aligned_cols=264 Identities=15% Similarity=0.193 Sum_probs=227.8
Q ss_pred hhHHHHhcCCCCccEEeeecCCCCCCCC-CCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHH
Q 003054 3 TNFIIQLGNKSQVPILSFSATSPSLTSI-RSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDA 81 (852)
Q Consensus 3 a~~v~~i~~~~~vP~Is~~ats~~lt~~-~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~ 81 (852)
+.++++++++++||+|+++++++.+++. .+||+||+.+++..++.++++++.+.||++|++|+.|+++|+...+.++++
T Consensus 95 ~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~ 174 (375)
T 4evq_A 95 AMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMVSGFKKS 174 (375)
T ss_dssp HHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHHHHHHHHHHHH
Confidence 4567889999999999999999998864 489999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCccccccccCC
Q 003054 82 LQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLE 161 (852)
Q Consensus 82 l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~~~ 161 (852)
+++.|++++....++.+ ..|+...+.++++.+||+|++.++..++..++++++++|+..+ |++++ +... +..
T Consensus 175 l~~~G~~v~~~~~~~~~--~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~vp---~~~~~-~~~~-~~~- 246 (375)
T 4evq_A 175 FTAGKGEVVKDITIAFP--DVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGIP---LWGPG-FLTD-GVE- 246 (375)
T ss_dssp HHHTTCEEEEEEEECTT--CCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCCCC---EEEEG-GGTT-TTH-
T ss_pred HHHcCCeEEEEEecCCC--CccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEecC-cCCH-HHH-
Confidence 99999999888777644 5679999999999999999999999999999999999999766 66654 3211 111
Q ss_pred chhhcccceEEEEEecCCC--ChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccCcCccccc
Q 003054 162 PSVIDSMQGVIGVGPHVPK--TKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKTN 239 (852)
Q Consensus 162 ~~~~~~~~gv~~~~~~~~~--~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~~~~~ 239 (852)
.......+|++...++.++ +|..++|.++|+++|+. .|+.+++.+|||++++++|+++++..
T Consensus 247 ~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--------~p~~~~~~~yda~~~~~~al~~~g~~-------- 310 (375)
T 4evq_A 247 AAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAYKI--------PPDVFAVQGWDAGQLLDAGVKAVGGD-------- 310 (375)
T ss_dssp HHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHHHHHHHHTTTC--------
T ss_pred HhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHHCC--------CCcHHHHHHHHHHHHHHHHHHHhCCC--------
Confidence 1234568999988877664 68999999999999987 78999999999999999999998731
Q ss_pred cCCCCCCCccccccCChHHHHHHhhccceeeeeeeEEee-cCccccceEEEEEccCC-cEEEEEEcC
Q 003054 240 VSRNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVNNG-ARGVGFWTP 304 (852)
Q Consensus 240 ~~~~~~~~~~~~~~~~g~~l~~al~~~~f~GltG~v~f~-~G~~~~~~~~I~~~~~g-~~~vG~w~~ 304 (852)
+.+++.|+++|++++|+|++|++.|+ +|++. ..+.|+++++| ++.|+.+-+
T Consensus 311 -------------~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~ 363 (375)
T 4evq_A 311 -------------VAKRKELNAAMAAASFASPRGPFKLSAAHNPV-QNFYLRELKGGKSVNLGLAAP 363 (375)
T ss_dssp -------------TTCHHHHHHHHHTCEEEETTEEEEBCTTSCBC-CCEEEEEEETTEEEEEEEEEC
T ss_pred -------------CCCHHHHHHHHhcCCcccCCcceeECCCCCcc-ccEEEEEEECCCcEEeeehhh
Confidence 25689999999999999999999998 89884 57899999955 999998854
No 24
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=99.95 E-value=1.3e-27 Score=263.57 Aligned_cols=263 Identities=17% Similarity=0.169 Sum_probs=224.3
Q ss_pred hhHHHHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHH
Q 003054 3 TNFIIQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDAL 82 (852)
Q Consensus 3 a~~v~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l 82 (852)
+.++++++++.+||+|+++++++.+++.. ||+||+.+++..++.++++++.+.||++|++|+.|++||+...+.+++++
T Consensus 85 ~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l 163 (358)
T 3hut_A 85 SMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAFRKAF 163 (358)
T ss_dssp HHHHHHHHHHHTCCEEESSCCCGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEecCCCCcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHHHHHH
Confidence 45678889999999999999999888654 99999999999999999999888899999999999999999999999999
Q ss_pred HhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCccccccccCCc
Q 003054 83 QAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEP 162 (852)
Q Consensus 83 ~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~~~~ 162 (852)
++.|++++....++.+ ..|+...+.++++.+||+|++.+...++..++++++++|+..+ |++++++.... . ..
T Consensus 164 ~~~g~~v~~~~~~~~~--~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~p---~~~~~~~~~~~-~-~~ 236 (358)
T 3hut_A 164 ELRGGAVVVNEEVPPG--NRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSALP---VYGSSALYSPK-F-ID 236 (358)
T ss_dssp HHTTCEEEEEEEECTT--CCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCCCC---EEECGGGCSHH-H-HH
T ss_pred HHcCCEEEEEEecCCC--CccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCCCc---EEecCcccCHH-H-HH
Confidence 9999999888777644 6779999999999999999999999999999999999999777 88877664321 1 11
Q ss_pred hhhcccceEEEEEecCC--CChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccCcCcccccc
Q 003054 163 SVIDSMQGVIGVGPHVP--KTKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKTNV 240 (852)
Q Consensus 163 ~~~~~~~gv~~~~~~~~--~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~~~~~~ 240 (852)
......+|++...++.+ ++|..++|.++|+++|+. .|+.+++.+|||++++++|+++++
T Consensus 237 ~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--------~p~~~~~~~yda~~~~~~al~~ag----------- 297 (358)
T 3hut_A 237 LGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYGA--------IPTLFAAHGYDAVGIMLAAVGRAG----------- 297 (358)
T ss_dssp HHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHHCC--------CCCHHHHHHHHHHHHHHHHHHHhC-----------
Confidence 23456889998887766 468999999999999987 789999999999999999999998
Q ss_pred CCCCCCCccccccCChHH-HHHHhhcc-ceeeeeeeEEee-cCccccceEEEEEccCC-cEEEEEEcC
Q 003054 241 SRNATDLEAFGISQNGPK-LLQALSST-RFKGLTGDYIFV-DGQLQSSAFEIINVNNG-ARGVGFWTP 304 (852)
Q Consensus 241 ~~~~~~~~~~~~~~~g~~-l~~al~~~-~f~GltG~v~f~-~G~~~~~~~~I~~~~~g-~~~vG~w~~ 304 (852)
+.++++ |+++|+++ +|+|++|++.|+ +|++....+.|+++++| ++.+....+
T Consensus 298 ------------~~~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~~~~~~~~~ 353 (358)
T 3hut_A 298 ------------PEVTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVIDREGH 353 (358)
T ss_dssp ------------TTCCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEEEEC-----
T ss_pred ------------CCChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEEEEeccccc
Confidence 335678 99999999 899999999998 88875677889999866 666655544
No 25
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=99.95 E-value=7.6e-28 Score=271.58 Aligned_cols=270 Identities=14% Similarity=0.061 Sum_probs=215.4
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCC-----C-CCCCceEeccCCchhHHHHHHHHHHHc--------CCcEEEEEEEe
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLT-----S-IRSPYFFRGSLNDSSQAGAITAIIKAF--------GWREAVPIYVD 67 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt-----~-~~~py~fR~~p~d~~~~~aia~~l~~~--------gw~~vaii~~d 67 (852)
.+.++++++++++||+|+++ +++.++ + ..++|+||+.|++..++.+++++++++ ||++|++||.|
T Consensus 95 ~~~a~~~~~~~~~ip~i~~~-~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~vail~~~ 173 (419)
T 3h5l_A 95 NGTALHDVAADAGVIAMHAN-TVAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIAIITGP 173 (419)
T ss_dssp CSCHHHHHHHHHTCEEEECC-CCHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEEEEEECS
T ss_pred hHHHhHHHHHHcCCeEEEcC-cchhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCEEEEEEcC
Confidence 36788999999999999964 444332 2 468999999999999999999999875 89999999999
Q ss_pred CCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeC-hhhHHHHHHHHHHcCCcccceE
Q 003054 68 NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML-PSLGSRIFEKANEIGLMNKGCV 146 (852)
Q Consensus 68 ~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~-~~~~~~i~~~a~~~G~~~~~~v 146 (852)
++||+...+.|++.+++.|++|+....++.+ +.|+.+++.+|++.++|+|++.+. +.++..++++++++|+.. .
T Consensus 174 ~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~--~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~g~~~---~ 248 (419)
T 3h5l_A 174 GIYSVNIANAIRDGAGEYGYDVSLFETVAIP--VSDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFMTDPTNS---L 248 (419)
T ss_dssp SHHHHHHHHHHHHHGGGGTCEEEEEEECCSS--CSCCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHTTSCCSC---E
T ss_pred cchhHHHHHHHHHHHHHcCCeEEEEecCCCC--CccHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHHHcCCCc---e
Confidence 9999999999999999999999999888754 678999999999999999999876 578999999999999933 4
Q ss_pred EEEcCccccccccCCchhhcccceEEEEEec-CCCChHHHHHHHHHHHhccccCCCCccccc-chhhHhHhhHHHHHHHH
Q 003054 147 WIMTDGMTNLLRTLEPSVIDSMQGVIGVGPH-VPKTKALENFRVRWKRNFLQENPSIVDVEL-NIFGLLAYDATRALAEA 224 (852)
Q Consensus 147 wi~~~~~~~~~~~~~~~~~~~~~gv~~~~~~-~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~-~~~a~~aYDAv~~lA~A 224 (852)
|++++++.... . .....+.++|++....+ .++++..++|.++|+++|+. .| +.+++.+|||++++++|
T Consensus 249 ~~~~~~~~~~~-~-~~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g~--------~p~~~~a~~~Yda~~~~~~a 318 (419)
T 3h5l_A 249 VYLQYGASLAA-F-RDIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERYGD--------LSSTASGCQTYSALYAYSIA 318 (419)
T ss_dssp EEECSGGGSHH-H-HHHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHHCT--------TSCHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCcHH-H-HHhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHhCC--------CCCcchhHHHHHHHHHHHHH
Confidence 77777765321 1 11234567888776554 34678999999999999997 45 46999999999999999
Q ss_pred HHHhcccCcCccccccCCCCCCCccccccCChHHHHHHhhccceeeeeeeEEee-cCccc------------cceEEEEE
Q 003054 225 VEKAGITSFGFDKTNVSRNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQ------------SSAFEIIN 291 (852)
Q Consensus 225 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~al~~~~f~GltG~v~f~-~G~~~------------~~~~~I~~ 291 (852)
+++++... ..+...++++|+++|++++|+|++|++.|+ +|+.. ...+.|+|
T Consensus 319 ~~~a~~~~----------------~~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~~~~~~~~~~~i~q 382 (419)
T 3h5l_A 319 AALAGGPG----------------APYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETNDPSLGMPHIFSQ 382 (419)
T ss_dssp HHHTTSCC----------------CTTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCSCTTSSEECEEEE
T ss_pred HHHhcCCc----------------cCCCccCHHHHHHHHHhCCcccCceEEEECCCCCccccccCccCCccccCCceEEE
Confidence 99987421 011135679999999999999999999998 88742 12355777
Q ss_pred ccCC-cEEEEEEc
Q 003054 292 VNNG-ARGVGFWT 303 (852)
Q Consensus 292 ~~~g-~~~vG~w~ 303 (852)
|++| ++.+-.|.
T Consensus 383 ~q~g~~~~~~V~P 395 (419)
T 3h5l_A 383 IFDKAEDGVLIAP 395 (419)
T ss_dssp CCCTTSCCEEEES
T ss_pred eeCCceeeEEECC
Confidence 7744 42233454
No 26
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=99.95 E-value=1.3e-27 Score=262.09 Aligned_cols=258 Identities=19% Similarity=0.229 Sum_probs=219.4
Q ss_pred hhHHHHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHH-HHcCCcEEEEEEEeCCcccccHHHHHHH
Q 003054 3 TNFIIQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAII-KAFGWREAVPIYVDNQYGEEMIPSLTDA 81 (852)
Q Consensus 3 a~~v~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l-~~~gw~~vaii~~d~~~G~~~~~~l~~~ 81 (852)
+.++++++++.++|+|+++++++.+++..+||+||+.+++..++.++++++ +++||++|++|+.+++||+...+.++++
T Consensus 82 ~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~~~ 161 (346)
T 1usg_A 82 TQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDG 161 (346)
T ss_dssp HHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHHHH
Confidence 456778899999999999998888886568999999999999999999998 5579999999999999999999999999
Q ss_pred HHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCccccccccCC
Q 003054 82 LQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLE 161 (852)
Q Consensus 82 l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~~~ 161 (852)
+++.|++++....++.+ +.|+..++.++++.+||+|++.+...++..++++++++|+..+ |++++++.... ..
T Consensus 162 l~~~g~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~~-~~- 234 (346)
T 1usg_A 162 LKAANANVVFFDGITAG--EKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQ---FMGPEGVGNAS-LS- 234 (346)
T ss_dssp HHHTTCCEEEEEECCTT--CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCCTT-HH-
T ss_pred HHHcCCEEEEEeccCCC--CcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCCe---EEecCCCCcHH-HH-
Confidence 99999999877666643 5678889999999999999999988899999999999999776 88877765321 11
Q ss_pred chhhcccceEEEEEecC-CCChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccCcCcccccc
Q 003054 162 PSVIDSMQGVIGVGPHV-PKTKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKTNV 240 (852)
Q Consensus 162 ~~~~~~~~gv~~~~~~~-~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~~~~~~ 240 (852)
......++|++...++. +++|..++|.++|+++|+. .|+.+++.+|||++++++|+++++
T Consensus 235 ~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~--------~~~~~~~~~yda~~~~~~al~~~g----------- 295 (346)
T 1usg_A 235 NIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADKKD--------PSGPYVWITYAAVQSLATALERTG----------- 295 (346)
T ss_dssp HHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTTCC--------CCCHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHhCC--------CCchhHHHHHHHHHHHHHHHHHhC-----------
Confidence 11234678988877653 3568899999999999976 678899999999999999999997
Q ss_pred CCCCCCCccccccCChHHHHHHhhccceeeeeeeEEee-cCccccceEEEEEcc-CC-cEE
Q 003054 241 SRNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN-NG-ARG 298 (852)
Q Consensus 241 ~~~~~~~~~~~~~~~g~~l~~al~~~~f~GltG~v~f~-~G~~~~~~~~I~~~~-~g-~~~ 298 (852)
+.++++|+++|++.+|+|++|++.|+ +|++....|.|++++ +| ++.
T Consensus 296 ------------~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~ 344 (346)
T 1usg_A 296 ------------SDEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTK 344 (346)
T ss_dssp ------------CCCHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEE
T ss_pred ------------CCCHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEe
Confidence 34579999999999999999999998 899866789999998 77 443
No 27
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=99.95 E-value=8.9e-27 Score=257.89 Aligned_cols=267 Identities=15% Similarity=0.205 Sum_probs=224.5
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHH
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDA 81 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~ 81 (852)
.+.++++++++++||+|+++++++.+++. +||+||+.+++..++.++++++.++||++|++|+.|+++|+...+.++++
T Consensus 84 ~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~~~~~ 162 (368)
T 4eyg_A 84 AALAAAPLATQAKVPEIVMAAGTSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAFFKER 162 (368)
T ss_dssp HHHHHHHHHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCceEEeccCCChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHhHHHHHHHHHH
Confidence 35678899999999999999998888865 89999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCccccccccCC
Q 003054 82 LQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLE 161 (852)
Q Consensus 82 l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~~~ 161 (852)
+++.|++++....++.+ ..|+..++.++++.+||+|++.+...++..++++++++|+..+++.|++++++..... ..
T Consensus 163 l~~~g~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~-~~ 239 (368)
T 4eyg_A 163 FTAGGGEIVEEIKVPLA--NPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGDVMDDDL-LN 239 (368)
T ss_dssp HHHTTCEEEEEEEECSS--SCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETTTTCHHH-HT
T ss_pred HHHcCCEEEEEEeCCCC--CCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecCcccCHHH-HH
Confidence 99999999988887754 6789999999999999999999888899999999999999766577888775432111 11
Q ss_pred chhhcccceEEEEEecCC--CChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccCcCccccc
Q 003054 162 PSVIDSMQGVIGVGPHVP--KTKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKTN 239 (852)
Q Consensus 162 ~~~~~~~~gv~~~~~~~~--~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~~~~~ 239 (852)
......+|++...++.+ ++|..++|.++| ++|+.. .|+.+++.+|||++++++|+++++.
T Consensus 240 -~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~-------~p~~~~~~~yda~~~~~~al~~~g~--------- 301 (368)
T 4eyg_A 240 -SMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFGQ-------RPGFMAVGGYDGIHLVFEALKKTGG--------- 301 (368)
T ss_dssp -TCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHHSS-------CCCHHHHHHHHHHHHHHHHHHHTTT---------
T ss_pred -hhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhCCC-------CCChHHHHHHHHHHHHHHHHHHhCC---------
Confidence 12345789988877765 468999999999 888432 6889999999999999999999872
Q ss_pred cCCCCCCCccccccCChHHHHHHhhccceeeeeeeEEee--cCccccceEEEEEcc--CC-c--EEEEEEcC
Q 003054 240 VSRNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV--DGQLQSSAFEIINVN--NG-A--RGVGFWTP 304 (852)
Q Consensus 240 ~~~~~~~~~~~~~~~~g~~l~~al~~~~f~GltG~v~f~--~G~~~~~~~~I~~~~--~g-~--~~vG~w~~ 304 (852)
+.++++|+++|++++|+|++|++.|+ +|+. ...+.|++++ +| + +.++.+.+
T Consensus 302 -------------~~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~-~~~~~i~~~~~~~G~~~~v~~~~~~~ 359 (368)
T 4eyg_A 302 -------------KADGDSLIAAMKGMKWESPRGPISIDPETRDI-VQNIYIRKVEKVDGELYNIEFAKFDA 359 (368)
T ss_dssp -------------CCSHHHHHHHHTTCEEEETTEEEEECTTTCCE-EEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred -------------CCCHHHHHHHHHcCCcccCCCCeEECcccCCc-ccceEEEEEEecCCeEEEEEeecccc
Confidence 24689999999999999999999997 5665 5667788888 66 3 44555543
No 28
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=99.94 E-value=2.8e-27 Score=264.41 Aligned_cols=272 Identities=12% Similarity=0.067 Sum_probs=225.5
Q ss_pred hhHHHHhcCCCCccEEeeecCCCCCCC-CCCCceEeccCCchhHHHHHHHHHHH-cCCcEEEEEEEeCCcccccHHHHHH
Q 003054 3 TNFIIQLGNKSQVPILSFSATSPSLTS-IRSPYFFRGSLNDSSQAGAITAIIKA-FGWREAVPIYVDNQYGEEMIPSLTD 80 (852)
Q Consensus 3 a~~v~~i~~~~~vP~Is~~ats~~lt~-~~~py~fR~~p~d~~~~~aia~~l~~-~gw~~vaii~~d~~~G~~~~~~l~~ 80 (852)
+.++++++++.+||+|+++++++ +.+ ..+||+||+.+++..++.++++++.+ +||++|++|+.|++||+...+.+++
T Consensus 87 ~~~~~~~~~~~~iP~i~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~~~~~~ 165 (392)
T 3lkb_A 87 NLQLKPLIQELRIPTIPASMHIE-LIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPVEDARK 165 (392)
T ss_dssp HHHHHHHHHHHTCCEEESCCCGG-GGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTTHHHHHH
T ss_pred HHHHHHHHHhCCceEEecccChh-hccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchhhhHHHHHHH
Confidence 56778899999999999876544 544 56899999999999999999999865 7999999999999999999999999
Q ss_pred HHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCccccccccC
Q 003054 81 ALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTL 160 (852)
Q Consensus 81 ~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~~ 160 (852)
++++.|++++....++.+ +.|+..++.++++.+||+|++.++..++..++++++++|+..+ |+.++++... ...
T Consensus 166 ~l~~~G~~v~~~~~~~~~--~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~-~~~ 239 (392)
T 3lkb_A 166 AARELGLQIVDVQEVGSG--NLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKMR---HLGAHYTGGP-DLI 239 (392)
T ss_dssp HHHHHTCEEEEEEECCTT--CCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCSH-HHH
T ss_pred HHHHcCCeEEEEEeeCCC--CcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCce---EEEecCcccH-HHH
Confidence 999999999988877744 6789999999999999999999999999999999999999776 7776654321 111
Q ss_pred CchhhcccceEEEEEecCCC--ChHHHHHHHHHHHhccccCCCCcccccchh----hHhHhhHHHHHHHHHHHhcccCcC
Q 003054 161 EPSVIDSMQGVIGVGPHVPK--TKALENFRVRWKRNFLQENPSIVDVELNIF----GLLAYDATRALAEAVEKAGITSFG 234 (852)
Q Consensus 161 ~~~~~~~~~gv~~~~~~~~~--~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~----a~~aYDAv~~lA~Al~~a~~~~~~ 234 (852)
...+...+|++...++.+. .+..++|.++|+++|+. .|+.+ ++.+|||++++++|+++++...
T Consensus 240 -~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~--------~p~~~~~~~~~~~yda~~~~~~al~~ag~~~-- 308 (392)
T 3lkb_A 240 -ALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYGR--------PENFIESVNYTNGMLAAAIAVEAIRRAQERF-- 308 (392)
T ss_dssp -HHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTTC--------CHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred -HhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHhCC--------CcccccchhHHHHHHHHHHHHHHHHHhhccC--
Confidence 1234568999888877542 46688999999999987 45444 8999999999999999998311
Q ss_pred ccccccCCCCCCCccccccCChHHHHHHhhccc----ee-------eeeeeEEee-cCccccceEEEEEccCC-cEEEEE
Q 003054 235 FDKTNVSRNATDLEAFGISQNGPKLLQALSSTR----FK-------GLTGDYIFV-DGQLQSSAFEIINVNNG-ARGVGF 301 (852)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~g~~l~~al~~~~----f~-------GltG~v~f~-~G~~~~~~~~I~~~~~g-~~~vG~ 301 (852)
...++++|+++|++++ |+ |++|++.|+ +|+.....+.|+++++| ++.|+.
T Consensus 309 -----------------~~~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~~~g~~~~v~~ 371 (392)
T 3lkb_A 309 -----------------KRITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEAKGGRFVPVTE 371 (392)
T ss_dssp -----------------SSCCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEEETTEEEECSC
T ss_pred -----------------CCCCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEEeCCEEEEecc
Confidence 0356899999999997 98 999999998 77765667889999855 999999
Q ss_pred EcCCCCcc
Q 003054 302 WTPEKGLT 309 (852)
Q Consensus 302 w~~~~g~~ 309 (852)
|....++.
T Consensus 372 w~~~~~~~ 379 (392)
T 3lkb_A 372 PFTSALFR 379 (392)
T ss_dssp CBCCHHHH
T ss_pred ccchhHHH
Confidence 98766654
No 29
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=99.94 E-value=4.8e-26 Score=250.62 Aligned_cols=256 Identities=20% Similarity=0.283 Sum_probs=207.5
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHc-CCcEEEEEEEe-CCcccccHHHHH
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAF-GWREAVPIYVD-NQYGEEMIPSLT 79 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~-gw~~vaii~~d-~~~G~~~~~~l~ 79 (852)
.+.+++++++++++|+|+++++++.+++ .++|+||+.|++..++.+++.++.+. +++++++++.+ ++||++..+.+.
T Consensus 87 ~~~a~~~~~~~~~vp~i~~~~~~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~ 165 (353)
T 4gnr_A 87 ATAAAVANATKAGVPLISPSATQDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGIAKSFR 165 (353)
T ss_dssp HHHHHHHHHHHTTCCEEESSCCCTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHHHHHHH
T ss_pred ccceehhhhhccCcceEeeccccccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHHHHHHHHHH
Confidence 4678899999999999999999999985 46899999999999999999998655 45555555544 458887777665
Q ss_pred HHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCcccccccc
Q 003054 80 DALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRT 159 (852)
Q Consensus 80 ~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~ 159 (852)
+ +.|++|+....++++ +.||++++.+|++.+||+|++.+...++..+++|++++|+..+ ++.++++.... .
T Consensus 166 ~---~~g~~vv~~~~~~~~--~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~-~ 236 (353)
T 4gnr_A 166 E---SYKGEIVADETFVAG--DTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKP---IVGGDGFNGEE-F 236 (353)
T ss_dssp H---HCCSEEEEEEEECTT--CCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCSC---EEECGGGCSHH-H
T ss_pred H---HcCCEEEEEEeeCCC--CCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCCc---EEEecccccch-h
Confidence 4 458999999998855 6789999999999999999999999999999999999999877 67666554321 1
Q ss_pred CCchhhcccceEEEEEecCC---CChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccCcCcc
Q 003054 160 LEPSVIDSMQGVIGVGPHVP---KTKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFD 236 (852)
Q Consensus 160 ~~~~~~~~~~gv~~~~~~~~---~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~~ 236 (852)
......+..+|++....+.+ .++..++|.++|+++|+. +|+.+++++|||++++++|+++++
T Consensus 237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~--------~p~~~a~~~Yda~~~la~Ai~~a~------- 301 (353)
T 4gnr_A 237 VQQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYNE--------EPSTFAALAYDSVHLVANAAKGAK------- 301 (353)
T ss_dssp HHHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHHHHHHTTCS-------
T ss_pred hhhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHhCC--------CCChhHHHHHHHHHHHHHHHhcCC-------
Confidence 11112356778887766544 367899999999999998 789999999999999999998654
Q ss_pred ccccCCCCCCCccccccCChHHHHHHhhcc-ceeeeeeeEEee-cCccccceEEEEEccCC-cEEEEE
Q 003054 237 KTNVSRNATDLEAFGISQNGPKLLQALSST-RFKGLTGDYIFV-DGQLQSSAFEIINVNNG-ARGVGF 301 (852)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~g~~l~~al~~~-~f~GltG~v~f~-~G~~~~~~~~I~~~~~g-~~~vG~ 301 (852)
++++++++|+++ +|+|++|++.|+ +|+.. ..+.|+++++| ++.+..
T Consensus 302 ------------------~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~v~~Gk~~~~~~ 350 (353)
T 4gnr_A 302 ------------------NSGEIKDNLAXTKDFEGVTGQTSFDADHNTV-KTAYMMTMNNGKVEAAEV 350 (353)
T ss_dssp ------------------SHHHHHHHHHTCCCEEETTEEECCCTTSCCC-CCEEEEEEETTEEEEEEE
T ss_pred ------------------CHHHHHHHHHhcCCCccCceeEEECCCcCCc-CCeEEEEEECCEEEEEEE
Confidence 358899999988 599999999998 99874 45668888877 555543
No 30
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=99.94 E-value=4.9e-26 Score=254.27 Aligned_cols=268 Identities=17% Similarity=0.160 Sum_probs=220.7
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHH-cCCcEEEEEEE-eCCcccccHHHHH
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKA-FGWREAVPIYV-DNQYGEEMIPSLT 79 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~-~gw~~vaii~~-d~~~G~~~~~~l~ 79 (852)
.+.++++++++.+||+|+++++++ ++ .+||+||+.|++..++.++++++.+ +||++|++|+. |++||+...+.++
T Consensus 87 ~~~a~~~~~~~~~iP~i~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g~~~~~~~~ 163 (391)
T 3eaf_A 87 DTEKLSDQVDTDKITYISASYSAK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYSRSPIGAIK 163 (391)
T ss_dssp HHHHHHHHHHHHTCEEEESCCCGG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHHHTTHHHHH
T ss_pred HHHHHHHHHhhcCCeEEecccchh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhHHHHHHHHH
Confidence 356788899999999999877654 44 6799999999999999999999866 79999999999 9999999999999
Q ss_pred HHHHhCCceeeeeeecCCCCChHHHHHHHHH--hhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCcccccc
Q 003054 80 DALQAIDTRVPYRSVISPLATDDQIEKELYK--LFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLL 157 (852)
Q Consensus 80 ~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~--l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~ 157 (852)
+++++.|++|+....++.+ ..|+..++.+ |++.+||+|++.++..++..++++++++|+..+ ++++++... .
T Consensus 164 ~~l~~~G~~v~~~~~~~~~--~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~-~ 237 (391)
T 3eaf_A 164 KAAPSLGLQVVGDYDLPLR--ATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLDAF---LLTNVWGFD-E 237 (391)
T ss_dssp HHTGGGTEEEEEEEECCTT--CCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCCCE---EEECGGGCS-T
T ss_pred HHHHHcCCceeeeeccCCC--CcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCce---EEEeccCCC-H
Confidence 9999999999988888744 6789999999 999999999999999999999999999999776 665544322 1
Q ss_pred ccCCchhhcccce-EEEEEecC-----CCChHHHHHHHHHHHhccccCCCCccccc--chhhHhHhhHHHHHHHHHHHh-
Q 003054 158 RTLEPSVIDSMQG-VIGVGPHV-----PKTKALENFRVRWKRNFLQENPSIVDVEL--NIFGLLAYDATRALAEAVEKA- 228 (852)
Q Consensus 158 ~~~~~~~~~~~~g-v~~~~~~~-----~~~~~~~~F~~~~~~~~~~~~~~~~~~~~--~~~a~~aYDAv~~lA~Al~~a- 228 (852)
... ...+..++| ++...++. ++.|. .+|+++|+++|+.. .| +.+++.+|||++++++|++++
T Consensus 238 ~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~-------~p~~~~~~~~~yda~~~l~~Al~~a~ 308 (391)
T 3eaf_A 238 RSP-QLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNGVS-------EDQINLRVVQGFVNVWLLIKAIESVT 308 (391)
T ss_dssp THH-HHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTTCC-------GGGCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHH-HhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhCCC-------CcccccHHHHHHHHHHHHHHHHHHHH
Confidence 111 123456899 88877765 34565 67999999999831 44 489999999999999999998
Q ss_pred --cccCcCccccccCCCCCCCccccccCChHHHHHHhhcccee--eeee-eEEee-cCccccceEEEEEc-cCC-cEEEE
Q 003054 229 --GITSFGFDKTNVSRNATDLEAFGISQNGPKLLQALSSTRFK--GLTG-DYIFV-DGQLQSSAFEIINV-NNG-ARGVG 300 (852)
Q Consensus 229 --~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~al~~~~f~--GltG-~v~f~-~G~~~~~~~~I~~~-~~g-~~~vG 300 (852)
|. .+.++++|+++|++.+|+ |++| ++.|+ +|+.....+.|+++ ++| ++.++
T Consensus 309 ~~g~---------------------~~~~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~~G~~~~v~ 367 (391)
T 3eaf_A 309 SQDL---------------------QERGGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGENGELQLMG 367 (391)
T ss_dssp HHHH---------------------HHHTHHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECTTSSEEEEE
T ss_pred hcCC---------------------CCCCHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEecCCEEEEee
Confidence 41 024579999999998899 9999 99998 55555677899999 566 99999
Q ss_pred EEcCCCCc
Q 003054 301 FWTPEKGL 308 (852)
Q Consensus 301 ~w~~~~g~ 308 (852)
.|......
T Consensus 368 ~~~~~~~~ 375 (391)
T 3eaf_A 368 KFEAPSQV 375 (391)
T ss_dssp EECCCTTC
T ss_pred eecCcccc
Confidence 99765543
No 31
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=99.94 E-value=6.1e-26 Score=251.86 Aligned_cols=252 Identities=17% Similarity=0.211 Sum_probs=205.3
Q ss_pred hhhHHHHhcCCCCccEEeeecCCCCCCCC-CCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHH
Q 003054 2 QTNFIIQLGNKSQVPILSFSATSPSLTSI-RSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTD 80 (852)
Q Consensus 2 ~a~~v~~i~~~~~vP~Is~~ats~~lt~~-~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~ 80 (852)
.+.+++++++++++|+|++.++++.+++. .+||+||+.|++..++.+++.+++++|| +|++|+.|++||++..+.|++
T Consensus 85 ~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g~~~~~~~~~ 163 (374)
T 3n0x_A 85 AALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFGRDGVAAFKE 163 (374)
T ss_dssp HHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHHHHHHHHHHH
Confidence 46788999999999999988888999874 5899999999999999999977888898 899999999999999999999
Q ss_pred HHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCC-----ceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCcccc
Q 003054 81 ALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ-----TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTN 155 (852)
Q Consensus 81 ~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~-----~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~ 155 (852)
.+++.|++|+....++.+ +.||++++.+|++.+ ||+|++....... .+++++++++...++.++..+....
T Consensus 164 ~~~~~G~~vv~~~~~~~~--~~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~~~~~g~~~~~~~~~~~ 239 (374)
T 3n0x_A 164 ALAKTGATLATEEYVPTT--TTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMDPKRYGIELSTGGNILP 239 (374)
T ss_dssp HHTTTTCEEEEEEEECTT--CCCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTCGGGGTEEEEECCCCTT
T ss_pred HHHHcCCEEeeeecCCCC--CccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcchhhcCCeeeeccccch
Confidence 999999999999888754 678999999999998 9999987443222 3456667777655665554333221
Q ss_pred ccccCCchhhcccceEEEEEec---CCCChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccC
Q 003054 156 LLRTLEPSVIDSMQGVIGVGPH---VPKTKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITS 232 (852)
Q Consensus 156 ~~~~~~~~~~~~~~gv~~~~~~---~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~ 232 (852)
... ......|+.+...+ .+++|..++|+++|+++|+. .|+.+++.+|||++++++|+++++
T Consensus 240 ~~~-----~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~g~--------~p~~~a~~~Yda~~~l~~Al~~ag--- 303 (374)
T 3n0x_A 240 ALA-----AYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNA--------PPDFFTAGGFSAAMAVVTAVQKAK--- 303 (374)
T ss_dssp GGG-----GGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHHSS--------CCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred hhh-----hhhhhcCccccceeccCCCCCHHHHHHHHHHHHHHCC--------CCChhHHHHHHHHHHHHHHHHHhC---
Confidence 111 11345666666543 34678999999999999987 789999999999999999999998
Q ss_pred cCccccccCCCCCCCccccccCChHHHHHHhhccceeeeeeeEEee--cCccccceEEEEEcc-CC
Q 003054 233 FGFDKTNVSRNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV--DGQLQSSAFEIINVN-NG 295 (852)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~al~~~~f~GltG~v~f~--~G~~~~~~~~I~~~~-~g 295 (852)
+.++++|+++|++++|+|++|++.|+ +|+. ...+.|++++ +|
T Consensus 304 --------------------~~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~-~~~~~i~~~~~~~ 348 (374)
T 3n0x_A 304 --------------------STDTEKLIAAMEGMEFDTPKGKMVFRKEDHQA-LQSMYHFKVKVDP 348 (374)
T ss_dssp --------------------SCCHHHHHHHHTTCEEEETTEEEEECTTTCBE-ECCEEEEEEECCT
T ss_pred --------------------CCCHHHHHHHHhcCCccCCCCCEEECcccCcc-ccceEEEEEEeCC
Confidence 35689999999999999999999997 4554 5678888887 44
No 32
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=99.93 E-value=1.2e-25 Score=248.53 Aligned_cols=256 Identities=14% Similarity=0.164 Sum_probs=215.5
Q ss_pred hhHHHH--hcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHH
Q 003054 3 TNFIIQ--LGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTD 80 (852)
Q Consensus 3 a~~v~~--i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~ 80 (852)
+.++++ ++++.+||+|++.++++.+++ +||+||+.|++..++.++++++.++||++|++|+.|++||+...+.+++
T Consensus 86 ~~~~~~~~~~~~~~iP~v~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~~~~~ 163 (364)
T 3lop_A 86 VEALMREGVLAEARLPLVGPATGASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAITGVER 163 (364)
T ss_dssp HHHHHHTTHHHHHTCCEESCSCCCGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHHHHHHHH
T ss_pred HHhhCchhhHHhcCCcEEEcccCcHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhhHHHHHHHHH
Confidence 567788 999999999999999988886 8999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCccccccccC
Q 003054 81 ALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTL 160 (852)
Q Consensus 81 ~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~~ 160 (852)
++++.|++++....++.+ ..|+..++.++++.+||+|++.++..++..++++++++|+..+ |++.+++.... ..
T Consensus 164 ~~~~~G~~v~~~~~~~~~--~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~i~~~~~~~~~-~~ 237 (364)
T 3lop_A 164 TLKAHALAITAMASYPRN--TANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEAQ---LLGLSSIDPGI-LQ 237 (364)
T ss_dssp HHHTTTCCCSEEEEECTT--SCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCCE---EEECTTSCHHH-HH
T ss_pred HHHHcCCcEEEEEEecCC--CccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCCe---EEEeccCChHH-HH
Confidence 999999999888777744 6789999999999999999999999999999999999999777 77776654321 11
Q ss_pred Cchhh-cccceEEEEEe----cCCCChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccCcCc
Q 003054 161 EPSVI-DSMQGVIGVGP----HVPKTKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGF 235 (852)
Q Consensus 161 ~~~~~-~~~~gv~~~~~----~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~ 235 (852)
...+ +.++|++.... +.++.|..++|.++|+++|+... .|+.+++.+|||++++++|+++++.
T Consensus 238 -~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~------~p~~~a~~~yda~~~~~~al~~ag~----- 305 (364)
T 3lop_A 238 -KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVGAKDV------DLSFRAVEGFVAAKVLAEAIRRAGP----- 305 (364)
T ss_dssp -HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHTCTTC------CCCHHHHHHHHHHHHHHHHHHHHCS-----
T ss_pred -HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCC------CCChHHHHHHHHHHHHHHHHHHhCC-----
Confidence 1123 45788877653 22467899999999999987621 4788999999999999999999972
Q ss_pred cccccCCCCCCCccccccCChHHHHHHhhcc-ceee-eeeeEEee-cCccccceEEEEEcc-CC
Q 003054 236 DKTNVSRNATDLEAFGISQNGPKLLQALSST-RFKG-LTGDYIFV-DGQLQSSAFEIINVN-NG 295 (852)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~g~~l~~al~~~-~f~G-ltG~v~f~-~G~~~~~~~~I~~~~-~g 295 (852)
+.++++|+++|+++ +|+| ++|++.|+ +++.......|.+++ +|
T Consensus 306 -----------------~~~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~ 352 (364)
T 3lop_A 306 -----------------KPTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNG 352 (364)
T ss_dssp -----------------SCCHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTS
T ss_pred -----------------CCCHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCC
Confidence 34689999999999 6999 99999998 554444556677776 44
No 33
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.93 E-value=7.6e-26 Score=244.52 Aligned_cols=277 Identities=19% Similarity=0.385 Sum_probs=193.0
Q ss_pred CCceEEEeeecccCcccceEEee--CCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCC---CCChhHHHH
Q 003054 343 NEKKLRIGVPVKKGFSDFVNVTI--DPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSS---SGSYNDLVY 417 (852)
Q Consensus 343 ~~~~lrv~v~~~~~~~~~~~~~~--d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~---ngs~~~li~ 417 (852)
++++||||+... +||.+.+. +..++++ ++.|+++||++++++++|+++++..++.. .+|.. +++|++++.
T Consensus 11 ~~~~l~V~~~~~---~P~~~~~~~~~~~~~~g-~~~G~~vdl~~~ia~~lg~~~~~~~~~~~-~~g~~~~~~~~~~~~~~ 85 (312)
T 1yae_A 11 SNRSLIVTTILE---EPYVLFKKSDKPLYGND-RFEGYCIDLLRELSTILGFTYEIRLVEDG-KYGAQDDVNGQWNGMVR 85 (312)
T ss_dssp CSCEEEEEECCB---TTTBEECCCSSCCCGGG-GEESHHHHHHHHHHHHHCCEEEEEECSSC-CCCCBCTTTCCBCSHHH
T ss_pred cCceEEEEEecc---CCeeEEeccccccCCCc-eEEEEEHHHHHHHHHHcCCeEEEEecCCC-ccceeccCCCcchHHHH
Confidence 478899999854 56666541 1111356 89999999999999999986555544332 22321 578999999
Q ss_pred HHhcCcccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheec
Q 003054 418 QVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEH 497 (852)
Q Consensus 418 ~l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~ 497 (852)
+|.+|++|+++++++++++|.+.++||.||+.++.+++++++.....++|.|+.||+..
T Consensus 86 ~l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~~--------------------- 144 (312)
T 1yae_A 86 ELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLV--------------------- 144 (312)
T ss_dssp HHHTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC---------------------------------------
T ss_pred HHhCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccccC---------------------
Confidence 99999999999899999999999999999999999999998765667899999999910
Q ss_pred ccCCCCCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHH
Q 003054 498 RVNEDFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLI 577 (852)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~ 577 (852)
|+ |++++...|++++||.
T Consensus 145 --------------------------------p~------------------------------tv~~~~~~i~~~~dL~ 162 (312)
T 1yae_A 145 --------------------------------PR------------------------------GSERMESPIDSADDLA 162 (312)
T ss_dssp ------------------------------------------------------------------------CCSHHHHH
T ss_pred --------------------------------Cc------------------------------ccccccCCCCCHHHHh
Confidence 00 4566667799999998
Q ss_pred hc-CCeEEEEeCchHHHHHHhcCCCC-----------cceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcC
Q 003054 578 KR-GDNVGYQKGSFVLGILKQLGFDE-----------RKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYC 645 (852)
Q Consensus 578 ~~-~~~vg~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~ 645 (852)
.. +.+||+..++....++.+..++. .+++.+++.++++++|.+|+ +|++.+...+.+++++.|
T Consensus 163 g~~~~~vg~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~-----Da~i~~~~~~~~~~~~~~ 237 (312)
T 1yae_A 163 KQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIEFVTQRNC 237 (312)
T ss_dssp TCSSSEEECBTTSHHHHHHHHCCBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSS-----EEEEEEHHHHHHHHTTCT
T ss_pred hccCceEEEEeCChHHHHHHhccCchHHHHHHHHHhcCCCcccCCHHHHHHHHHcCC-----cEEEeccHHHHHHHhcCC
Confidence 32 12799876666667776543321 24567889999999999987 788889999999998888
Q ss_pred CceEeecccccccceEEEecCCCCchhhHHHHHHhccccChhHHHHHHHccCCCCCCCCCCCcccccccc
Q 003054 646 SKYAMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPDASTVVSSRSLGL 715 (852)
Q Consensus 646 ~~~~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~i~~kw~~~~~~c~~~~~~~~~~~L~l 715 (852)
+ +.+++..+...+++++++|++||++.||++|.+|.++|.+++|.+||+.. ..|...... ++..+++
T Consensus 238 ~-l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~-~~c~~~~~~-~~~~~~~ 304 (312)
T 1yae_A 238 N-LTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRG-NGCPEEESK-EASALGV 304 (312)
T ss_dssp T-EEEESSCSSCEEEEEEEETTCSSHHHHHHHHHHHHHHTHHHHHHHHHHCC-SCC--------------
T ss_pred C-EEEecccccccceEEEEeCCCCcHHHHHHHHHHHHHcCCHHHHHhhhcCC-CCCCCCCCc-cchhhhh
Confidence 5 88888888888999999999999999999999999999999999999975 589875532 3334443
No 34
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=99.93 E-value=1.4e-25 Score=249.92 Aligned_cols=266 Identities=16% Similarity=0.197 Sum_probs=216.3
Q ss_pred hhHHHHhcCCCCccEEeeecCCCCCC--CCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHH
Q 003054 3 TNFIIQLGNKSQVPILSFSATSPSLT--SIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTD 80 (852)
Q Consensus 3 a~~v~~i~~~~~vP~Is~~ats~~lt--~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~ 80 (852)
+.++.+++++.+||+|+++++++.++ ...+||+||+.+++..++.++++++.++||++|++|+.|++||++..+.+++
T Consensus 102 ~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~ 181 (386)
T 3sg0_A 102 SLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYYKVLAA 181 (386)
T ss_dssp HHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHHHHH
Confidence 56778999999999999999888887 4678999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCccccccccC
Q 003054 81 ALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTL 160 (852)
Q Consensus 81 ~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~~ 160 (852)
++++.|++++....++.+ +.|+...+.++++.+||+|++.++..++..++++++++|+..+ ++..+++... +..
T Consensus 182 ~l~~~g~~v~~~~~~~~~--~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~-~~~ 255 (386)
T 3sg0_A 182 AAPKLGFELTTHEVYARS--DASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGA---IYQTHGVATE-EFI 255 (386)
T ss_dssp HHHHHTCEECCCEEECTT--CSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCSE---EECCGGGCSH-HHH
T ss_pred HHHHcCCEEEEEEeeCCC--CCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCCc---EEeccccCCH-HHH
Confidence 999999999877777744 6689999999999999999999998999999999999999766 6666665432 111
Q ss_pred CchhhcccceEEEEEec------CC-CC---hHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcc
Q 003054 161 EPSVIDSMQGVIGVGPH------VP-KT---KALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGI 230 (852)
Q Consensus 161 ~~~~~~~~~gv~~~~~~------~~-~~---~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~ 230 (852)
.......+|++....+ .| .. +..++|.++|+++|+.+ .|+.+++.+|||++++++|+++++.
T Consensus 256 -~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-------~p~~~~~~~yda~~~~~~al~~a~~ 327 (386)
T 3sg0_A 256 -KLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGGA-------APTIFGVHLWDSMTLVENAIPAALK 327 (386)
T ss_dssp -HHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTTC-------CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCCC-------CCChhHHHHHHHHHHHHHHHHHhhh
Confidence 1234567898876642 22 22 46899999999999873 4788999999999999999999863
Q ss_pred cCcCccccccCCCCCCCccccccCChHHHHHHhhcc-ceeeeeeeEEee-cCcc--ccceEEEEEccCC-cEE
Q 003054 231 TSFGFDKTNVSRNATDLEAFGISQNGPKLLQALSST-RFKGLTGDYIFV-DGQL--QSSAFEIINVNNG-ARG 298 (852)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~al~~~-~f~GltG~v~f~-~G~~--~~~~~~I~~~~~g-~~~ 298 (852)
... .+...++++|+++|+++ +|+|++|++.|+ +++. ....+.|+++++| ++.
T Consensus 328 ~~~----------------~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~ 384 (386)
T 3sg0_A 328 AAK----------------PGTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDGAFRL 384 (386)
T ss_dssp HCC----------------TTSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEETTEEEE
T ss_pred ccC----------------CCCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEECCEEEe
Confidence 210 01123578999999999 899999999997 3322 2345788888866 443
No 35
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=99.93 E-value=3.9e-25 Score=243.87 Aligned_cols=264 Identities=15% Similarity=0.131 Sum_probs=213.6
Q ss_pred hhHHHHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHH
Q 003054 3 TNFIIQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDAL 82 (852)
Q Consensus 3 a~~v~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l 82 (852)
+.++.+++++.++|+|++.++ + +....+||+||+.+++..++.++++++.++||++|++|+.|++||+...+.+++++
T Consensus 82 ~~~~~~~~~~~~ip~v~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l 159 (362)
T 3snr_A 82 SVAISNVANEAQIPHIALAPL-P-ITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFNDLKKQG 159 (362)
T ss_dssp HHHHHHHHHHHTCCEEESSCC-C-CCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccEEEecCC-c-cccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHHHHHHH
Confidence 456788899999999998887 4 34466899999999999999999999999999999999999999999999999999
Q ss_pred HhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCccccccccCCc
Q 003054 83 QAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEP 162 (852)
Q Consensus 83 ~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~~~~ 162 (852)
++.|++++....++.+ +.|+...+.++++.+||+|++.++..++..++++++++|+..+ ++...++.... . ..
T Consensus 160 ~~~g~~v~~~~~~~~~--~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~p---~i~~~g~~~~~-~-~~ 232 (362)
T 3snr_A 160 EAMGLKIVGEERFARP--DTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGL---IYQTHGAASMD-F-IR 232 (362)
T ss_dssp HHTTCEEEEEEEECTT--CSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCCSE---EEECGGGCSHH-H-HH
T ss_pred HHcCCEEEEEeecCCC--CCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCcc---EEeccCcCcHH-H-HH
Confidence 9999999887777744 6679999999999999999999989999999999999999776 56666654321 1 11
Q ss_pred hhhcccceEEEEEec----------CCCChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccC
Q 003054 163 SVIDSMQGVIGVGPH----------VPKTKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITS 232 (852)
Q Consensus 163 ~~~~~~~gv~~~~~~----------~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~ 232 (852)
.....++|++....+ .|.++..++|.++|+++|+.+ .|+.+++.+|||++++++|+++++...
T Consensus 233 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-------~p~~~~~~~yda~~~~~~al~~a~~~~ 305 (362)
T 3snr_A 233 IAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYGPS-------SRSQFAGHSYDAFKVLERVVPVALKKA 305 (362)
T ss_dssp HHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHCTT-------CCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhCCC-------CCCchhHhHHHHHHHHHHHHHHhhccc
Confidence 234567898877642 122367899999999999873 578999999999999999999996331
Q ss_pred cCccccccCCCCCCCccccccCChHHHHHHhhcc-ceeeeeeeEEee-cCcc--ccceEEEEEccCC-cEE
Q 003054 233 FGFDKTNVSRNATDLEAFGISQNGPKLLQALSST-RFKGLTGDYIFV-DGQL--QSSAFEIINVNNG-ARG 298 (852)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~al~~~-~f~GltG~v~f~-~G~~--~~~~~~I~~~~~g-~~~ 298 (852)
. .+...+++.|+++|+++ +|+|++|++.|+ +++. ....+.|+++++| ++.
T Consensus 306 ~----------------~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~ 360 (362)
T 3snr_A 306 K----------------PGTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVKNGKYVI 360 (362)
T ss_dssp C----------------TTSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEEEEEETTEEEE
T ss_pred c----------------CCCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEEEEEECCEEEE
Confidence 0 01134578999999999 899999999997 4222 2455788888866 443
No 36
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=99.92 E-value=4.5e-24 Score=237.77 Aligned_cols=263 Identities=13% Similarity=0.092 Sum_probs=210.8
Q ss_pred hhHHHHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHH
Q 003054 3 TNFIIQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDAL 82 (852)
Q Consensus 3 a~~v~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l 82 (852)
+.++.+++++.++|+|++.+++. ...+|++||+.+++..++.++++++.+.||++|++|+.+++||+...+.+++++
T Consensus 88 ~~~~~~~~~~~~iP~v~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l 164 (385)
T 1pea_A 88 RKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLY 164 (385)
T ss_dssp HHHHHHHHHHTTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCceEEECCcccC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHHHHHHHHHHHHH
Confidence 45678888999999999876421 124689999999999999999999999999999999998889999999999999
Q ss_pred HhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCcccc-ccccCC
Q 003054 83 QAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTN-LLRTLE 161 (852)
Q Consensus 83 ~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~-~~~~~~ 161 (852)
++.|++++....++...+..|+...+.+|++.+||+|++.++...+..++++++++|+..+.+.++..+ +.. .+...
T Consensus 165 ~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~~~-~~~~~~~~~- 242 (385)
T 1pea_A 165 RQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLT-TSEAEVAKM- 242 (385)
T ss_dssp HHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEEESS-CCHHHHTTS-
T ss_pred HHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCceEEecc-cchHHHHhc-
Confidence 999999987666654235789999999999889999999888889999999999999975444455443 332 11111
Q ss_pred chhhcccceEEEEEecCC--CChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccCcCccccc
Q 003054 162 PSVIDSMQGVIGVGPHVP--KTKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKTN 239 (852)
Q Consensus 162 ~~~~~~~~gv~~~~~~~~--~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~~~~~ 239 (852)
..+.++|+++..++.+ ++|..++|.++|+++|+.+. .|+.+++.+|||++++++|+++++
T Consensus 243 --~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~------~~~~~~~~~yda~~~~~~Al~~ag---------- 304 (385)
T 1pea_A 243 --ESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPENA------TITAWAEAAYWQTLLLGRAAQAAG---------- 304 (385)
T ss_dssp --CHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSCTTC------CCCHHHHHHHHHHHHHHHHHHHHT----------
T ss_pred --CchhhCCeEEecccccccCCHHHHHHHHHHHHHhCCCC------CCChHHHHHHHHHHHHHHHHHHhC----------
Confidence 1235789988877654 46889999999999997521 478899999999999999999997
Q ss_pred cCCCCCCCccccccCChHHHHHHhhccceeeeeeeEEee-cCccccceEEEEEc-cCC-cEEEEE
Q 003054 240 VSRNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINV-NNG-ARGVGF 301 (852)
Q Consensus 240 ~~~~~~~~~~~~~~~~g~~l~~al~~~~f~GltG~v~f~-~G~~~~~~~~I~~~-~~g-~~~vG~ 301 (852)
+.++++|+++|++++|+|++|++.|+ +++.....+.|+++ ++| ++.|..
T Consensus 305 -------------~~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~ 356 (385)
T 1pea_A 305 -------------NWRVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQ 356 (385)
T ss_dssp -------------SCCHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEE
T ss_pred -------------CCCHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeec
Confidence 34579999999999999999999998 45443556778888 455 555543
No 37
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.92 E-value=1.1e-25 Score=239.60 Aligned_cols=244 Identities=21% Similarity=0.359 Sum_probs=191.2
Q ss_pred ccCCCceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCC-CCCChhHHHHH
Q 003054 340 VPTNEKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGS-SSGSYNDLVYQ 418 (852)
Q Consensus 340 ~~~~~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~-~ngs~~~li~~ 418 (852)
.|.++++|||||++.++|++|.... ++.++.+ ++.|+++|+++++++++|+++++...+.+ .+|. .+++|++++.+
T Consensus 24 ~~~~~~~lrvgv~~~~~~~~~~~~~-~~~~~~~-~~~G~~~dl~~~i~~~lg~~~~~~~~~~~-~~g~~~~~~~~~~~~~ 100 (284)
T 2a5s_A 24 DPLTETCVRNTVPCRKFVKINNSTN-EGMNVKK-CCKGFCIDILKKLSRTVKFTYDLYLVTNG-KHGKKVNNVWNGMIGE 100 (284)
T ss_dssp CCC-CCCCTTCEEEEEEEESSSSSS-CEEEEEE-EEESHHHHHHHHHHHHHTCCEEEEECCSS-SSCCEETTEECHHHHH
T ss_pred CCCCCcccccccccccccccccccc-CCCCCcc-eeeEEhHHHHHHHHHHCCCCEEEEEccCC-ccCcccCCCHHHHHHH
Confidence 3567999999999999888875321 1122345 78999999999999999985555443322 1222 45789999999
Q ss_pred HhcCcccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecc
Q 003054 419 VFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHR 498 (852)
Q Consensus 419 l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~ 498 (852)
|.+|++|+++++++++++|.+.++||.||+.++.+++++++..
T Consensus 101 l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------- 143 (284)
T 2a5s_A 101 VVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQ------------------------------------- 143 (284)
T ss_dssp HHTTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTCC-------------------------------------
T ss_pred HhcCCcCEEEEEEEEeccccceEEeccCchhcCEEEEEECCcc-------------------------------------
Confidence 9999999999999999999999999999999999999997632
Q ss_pred cCCCCCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHh
Q 003054 499 VNEDFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIK 578 (852)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~ 578 (852)
+++++||..
T Consensus 144 -----------------------------------------------------------------------~~~~~dl~~ 152 (284)
T 2a5s_A 144 -----------------------------------------------------------------------VTGLSDKKF 152 (284)
T ss_dssp -----------------------------------------------------------------------CCSTTSHHH
T ss_pred -----------------------------------------------------------------------ccccccccc
Confidence 333344432
Q ss_pred -------cCCeEEEEeCchHHHHHHhcCCCCc--ceeec--CCHhHHHHHhhcccccCceeEEEechhHHHHHHhhc--C
Q 003054 579 -------RGDNVGYQKGSFVLGILKQLGFDER--KLVVY--NSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQY--C 645 (852)
Q Consensus 579 -------~~~~vg~~~~s~~~~~l~~~~~~~~--~~~~~--~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~--~ 645 (852)
.+.+||+..++.....+.+. ++.. +++.+ ++.++++++|.+|+ ++|++.+...+.++++++ |
T Consensus 153 ~~~~~l~~~~~vg~v~~~s~~~~l~~~-~~~~~~~i~~~~~~~~~~~l~~l~~G~----vDa~i~d~~~~~~~~~~~~~~ 227 (284)
T 2a5s_A 153 QRPHDYSPPFRFGTVPNGSTERNIRNN-YPYMHQYMTRFNQRGVEDALVSLKTGK----LDAFIYDAAVLNYKAGRDEGC 227 (284)
T ss_dssp HSGGGSSSCCCEECCTTSHHHHHHHTT-CHHHHHHHGGGCCSSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHTCTTS
T ss_pred CChhHcCCCceEEEEeCCchHHHHHHH-HHHHHHHHHhccCCCHHHHHHHHHcCC----eeEEEEchHHHHHHHhcCCCC
Confidence 26789977655555555542 3321 35555 78999999999999 999999999999999876 7
Q ss_pred CceEeec--ccccccceEEEecCCCCchhhHHHHHHhccccChhHHHHHHHccCCCCCC
Q 003054 646 SKYAMIE--PKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCP 702 (852)
Q Consensus 646 ~~~~~v~--~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~i~~kw~~~~~~c~ 702 (852)
+ +.+++ ..+...+++++++|+++|++.||++|.++.++|.+++|.+||+. ..|.
T Consensus 228 ~-l~~~~~~~~~~~~~~~~a~~k~~~l~~~ln~~l~~l~~~g~~~~i~~kw~~--~~c~ 283 (284)
T 2a5s_A 228 K-LVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLT--GICH 283 (284)
T ss_dssp C-EEEEECCCGGGCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHTC--CCCC
T ss_pred C-EEEeCCccccccCceEEEecCCCHHHHHHHHHHHHHHhCChHHHHHHHhhh--ccCC
Confidence 4 77774 56778899999999999999999999999999999999999995 4785
No 38
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.91 E-value=4.9e-24 Score=223.53 Aligned_cols=241 Identities=20% Similarity=0.397 Sum_probs=194.7
Q ss_pred CCceEEEeeecccCcccceEEeeC--CCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCC--CCCChhHHHHH
Q 003054 343 NEKKLRIGVPVKKGFSDFVNVTID--PKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGS--SSGSYNDLVYQ 418 (852)
Q Consensus 343 ~~~~lrv~v~~~~~~~~~~~~~~d--~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~--~ngs~~~li~~ 418 (852)
++++||||+... +||.+.+.+ +.++++ ++.|+++||++++++++|+++++++++.+..+.. .+++|.+++.+
T Consensus 2 ~~~~l~v~~~~~---~P~~~~~~~~~~~~~~g-~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~ 77 (259)
T 3g3k_A 2 SNRSLIVTTILE---EPYVLFKKSDKPLYGND-RFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRE 77 (259)
T ss_dssp -CCCEEEEECCB---TTTBEECCCSSCCCGGG-GEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHH
T ss_pred CCcEEEEEEecC---CCeEEEeecccccCCCc-eeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHH
Confidence 367899999855 456665532 223357 9999999999999999998776666554322211 14689999999
Q ss_pred HhcCcccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecc
Q 003054 419 VFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHR 498 (852)
Q Consensus 419 l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~ 498 (852)
|.+|++|++++++++|++|.+.++||.||+..+.+++++++.
T Consensus 78 l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~-------------------------------------- 119 (259)
T 3g3k_A 78 LIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGT-------------------------------------- 119 (259)
T ss_dssp HHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSS--------------------------------------
T ss_pred HhcCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCc--------------------------------------
Confidence 999999999999999999999999999999999999999763
Q ss_pred cCCCCCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHh
Q 003054 499 VNEDFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIK 578 (852)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~ 578 (852)
+|++++||..
T Consensus 120 ----------------------------------------------------------------------~i~~~~dL~g 129 (259)
T 3g3k_A 120 ----------------------------------------------------------------------PIDSADDLAK 129 (259)
T ss_dssp ----------------------------------------------------------------------SCCSHHHHHT
T ss_pred ----------------------------------------------------------------------cccCHHHhcc
Confidence 1789999983
Q ss_pred c-CCeEEEEeCchHHHHHHhcCCCC-----------cceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCC
Q 003054 579 R-GDNVGYQKGSFVLGILKQLGFDE-----------RKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCS 646 (852)
Q Consensus 579 ~-~~~vg~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~ 646 (852)
. +.++|+..++....++.+.+... ..++.+++.++++++|.+|+ +|++.+...+.+++++.|+
T Consensus 130 ~~~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-----da~i~~~~~~~~~~~~~~~ 204 (259)
T 3g3k_A 130 QTKIEYGAVEDGATMTFFKRSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-----YAFLMESTTIEFVTQRNCN 204 (259)
T ss_dssp CSSSEEEEETTSHHHHHHHHCCSHHHHHHHHHHHHTHHHHEESSHHHHHHHHHHSS-----EEEEEEHHHHHHHHHHCTT
T ss_pred CCCceEEEecCcHHHHHHhhccchhHHHHHHHHHhcCCCcccCCHHHHHHHHHhCC-----eEEEechHHHHHHhcCCce
Confidence 2 22489888888888877643321 13467789999999999996 6888899999999988885
Q ss_pred ceEeecccccccceEEEecCCCCchhhHHHHHHhccccChhHHHHHHHccCCCCCC
Q 003054 647 KYAMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCP 702 (852)
Q Consensus 647 ~~~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~i~~kw~~~~~~c~ 702 (852)
+.+++..+...+++++++|++||+..||++|.+|.++|.+++|.+||++ ...|+
T Consensus 205 -l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~-~~~c~ 258 (259)
T 3g3k_A 205 -LTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWR-GNGCP 258 (259)
T ss_dssp -EEEESSCSSCEEECCEEETTCTHHHHHHHHHHHHHHTC-CHHHHHHHHC-C--CC
T ss_pred -EEEecccceeeeEEEEECCCCccHHHHHHHHHHHHhcChHHHHHHhhcC-CCCCC
Confidence 8889888888999999999999999999999999999999999999997 55686
No 39
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.90 E-value=1.1e-23 Score=218.65 Aligned_cols=224 Identities=19% Similarity=0.263 Sum_probs=190.6
Q ss_pred CceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCc
Q 003054 344 EKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGE 423 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~ 423 (852)
.+.|+||+. +.|+||.+.+. .++++ ++.||++||+++|++++|+ ++++++. .|.+++.+|.+|+
T Consensus 11 ~g~L~Vg~~--~~~pP~~~~~~--~d~~g-~~~G~~vdl~~~ia~~lg~--~~~~~~~---------~~~~~~~~l~~g~ 74 (243)
T 4h5g_A 11 KGKLVVATS--PDYAPFEFQSL--VDGKN-QVVGADIDMAQAIADELGV--KLEILSM---------SFDNVLTSLQTGK 74 (243)
T ss_dssp HTEEEEEEC--CCBTTTBEEEE--ETTEE-EEESHHHHHHHHHHHHHTS--EEEEEEC---------CGGGHHHHHHTTS
T ss_pred CCEEEEEEC--CCCCCcEeeec--cCCCC-cEEEeHHHHHHHHHHHhCC--ceEEecc---------cHHHHHHHHHcCC
Confidence 457999996 78899987531 12567 8999999999999999996 5555553 4999999999999
Q ss_pred ccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCCCC
Q 003054 424 FDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNEDF 503 (852)
Q Consensus 424 ~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~~ 503 (852)
+|++++++++|++|.+.++||.||+..+.++++++.+..
T Consensus 75 ~d~~~~~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~~~----------------------------------------- 113 (243)
T 4h5g_A 75 ADLAVAGISATDERKEVFDFSIPYYENKISFLVHKADVE----------------------------------------- 113 (243)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCSBCCCEEEEEEGGGTT-----------------------------------------
T ss_pred CCcccccccCChhHccEEEccCccccCcccccccccccc-----------------------------------------
Confidence 999999999999999999999999999999999976433
Q ss_pred CCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCCeE
Q 003054 504 RGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNV 583 (852)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~v 583 (852)
.+++++||. |++|
T Consensus 114 -----------------------------------------------------------------~~~~~~dl~--g~~i 126 (243)
T 4h5g_A 114 -----------------------------------------------------------------KYKDLTSLE--SANI 126 (243)
T ss_dssp -----------------------------------------------------------------TCCSHHHHH--TSEE
T ss_pred -----------------------------------------------------------------cccccccCC--CCEE
Confidence 278999997 9999
Q ss_pred EEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCC-ceEee-cccccccceE
Q 003054 584 GYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCS-KYAMI-EPKFKTAGFG 661 (852)
Q Consensus 584 g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~-~~~~v-~~~~~~~~~~ 661 (852)
|+..|+....++.+. ++..+++.+++.++++++|.+|+ +|+++.+...+.+++.++.. .+..+ .......+++
T Consensus 127 ~v~~g~~~~~~l~~~-~~~~~i~~~~~~~~~~~~l~~Gr----vD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (243)
T 4h5g_A 127 AAQKGTVPESMVKEQ-LPKAQLTSLTNMGEAVNELQAGK----IDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANA 201 (243)
T ss_dssp EEETTSHHHHHHHHH-CTTSEEEEESCHHHHHHHHHHTS----CSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBC
T ss_pred EecCCcHHHHHHHHh-cccceeEEeCCHHHHHHHHHcCC----ccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEE
Confidence 999999999988775 56778999999999999999999 99999999888888877643 12222 3344566789
Q ss_pred EEecCCCC-chhhHHHHHHhccccChhHHHHHHHcc
Q 003054 662 FVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFK 696 (852)
Q Consensus 662 ~~~~k~sp-l~~~in~~il~l~e~G~~~~i~~kw~~ 696 (852)
++++|++| |++.||++|.+|+++|.+++|.+||+.
T Consensus 202 ~a~~k~~~~L~~~~n~aL~~l~~dG~~~~i~~Kw~~ 237 (243)
T 4h5g_A 202 VALRKNSDDLKEVVDKVIQKLKDEGTYQSYLEKAAS 237 (243)
T ss_dssp CEEESSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 99999998 999999999999999999999999985
No 40
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.90 E-value=2.1e-23 Score=216.59 Aligned_cols=223 Identities=16% Similarity=0.227 Sum_probs=185.2
Q ss_pred CCceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHC-CCccceEEEecCCCCCCCCCChhHHHHHHhc
Q 003054 343 NEKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQEL-PYAVAYDFVPYGQPDGSSSGSYNDLVYQVFL 421 (852)
Q Consensus 343 ~~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l-~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~ 421 (852)
..++|+||+. +.|+||.+.+ .++ ++.||++||+++|+++| |+ ++++++. .|.+++.+|.+
T Consensus 7 ~~~tl~vg~~--~~~pP~~~~d-----~~G-~~~G~~vdl~~~ia~~l~g~--~~~~~~~---------~~~~~~~~l~~ 67 (243)
T 4gvo_A 7 KVQTITVGTG--TQFPNVCFLD-----ENG-KLTGYDVELVKEIDKRLPGY--KFKFKTM---------DFSNLLVSLGA 67 (243)
T ss_dssp -CEEEEEEEC--SEETTTEEEC-----TTS-CEESHHHHHHHHHHHTCTTE--EEEEEEC---------CGGGHHHHHHT
T ss_pred cCCeEEEEEC--CCCCCeEEEC-----CCC-cEEEhHHHHHHHHHHhccCC--eEEEEEC---------CHHHHHHHHHC
Confidence 3578999987 7899999887 577 99999999999999998 75 5555553 49999999999
Q ss_pred CcccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCC
Q 003054 422 GEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNE 501 (852)
Q Consensus 422 g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~ 501 (852)
|++|++++++++|++|.+.++||.||+.....+++.++...
T Consensus 68 g~~D~~~~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~--------------------------------------- 108 (243)
T 4gvo_A 68 GKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNN--------------------------------------- 108 (243)
T ss_dssp TSCSEECSCCBCCHHHHHHSEECSSCCEECCEEEEEETTCC---------------------------------------
T ss_pred CCCCEecccCCCCHHHhhhhhhhhhhcccccceEEEecccc---------------------------------------
Confidence 99999999999999999999999998776655555544332
Q ss_pred CCCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCC
Q 003054 502 DFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGD 581 (852)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~ 581 (852)
.+++++||. |+
T Consensus 109 -------------------------------------------------------------------~~~~~~dL~--g~ 119 (243)
T 4gvo_A 109 -------------------------------------------------------------------SINSTKDLA--GK 119 (243)
T ss_dssp -------------------------------------------------------------------SCSSGGGGT--TC
T ss_pred -------------------------------------------------------------------ccCchHHhc--CC
Confidence 288999996 99
Q ss_pred eEEEEeCchHHHHHHh----cCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCCceEeecccccc
Q 003054 582 NVGYQKGSFVLGILKQ----LGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCSKYAMIEPKFKT 657 (852)
Q Consensus 582 ~vg~~~~s~~~~~l~~----~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 657 (852)
+||+..|+....++++ .+........+.+.++++++|..|+ ++|++.+...+.++.++....+.++++.+..
T Consensus 120 ~v~v~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (243)
T 4gvo_A 120 RVITSATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGR----ADATISTPFAVDFQNKTSAIKEKVVGDVLSN 195 (243)
T ss_dssp EEEECTTCHHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHHTS----CSBEEECHHHHHHHHHTCSSCEEEEEEEEEC
T ss_pred eEEEecCchHHHHHHHHHHhccccceeccccCChHHHHHHHHcCC----ccEEEccHHHHHHHHhhCCCceEEeccCCCC
Confidence 9999999877766654 2222222345678889999999999 9999999998888887764457778888888
Q ss_pred cceEEEecCCCC-chhhHHHHHHhccccChhHHHHHHHcc
Q 003054 658 AGFGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFK 696 (852)
Q Consensus 658 ~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~i~~kw~~ 696 (852)
.+++++++|++| |++.||++|.+|+++|.+++|.+|||+
T Consensus 196 ~~~~~~~~k~~~~l~~~in~~l~~l~~~G~~~~i~~kw~g 235 (243)
T 4gvo_A 196 AKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLG 235 (243)
T ss_dssp CEECCEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHCC
Confidence 899999999988 999999999999999999999999996
No 41
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.90 E-value=2.9e-24 Score=229.61 Aligned_cols=237 Identities=19% Similarity=0.339 Sum_probs=187.8
Q ss_pred CceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCC-------CCCChhHHH
Q 003054 344 EKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGS-------SSGSYNDLV 416 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~-------~ngs~~~li 416 (852)
.+.++||+. +.|+||.+.+ .++ ++.||++||+++|++++|+++++..++.+ .+|. ++++|++++
T Consensus 40 ~~~l~vg~~--~~~~P~~~~~-----~~g-~~~G~~vDll~~ia~~lg~~~~~~~~~d~-~~g~~~~~~~~~~~~w~~~~ 110 (292)
T 1pb7_A 40 KKVICTGPN--DTSPGSPRHT-----VPQ-CCYGFCIDLLIKLARTMNFTYEVHLVADG-KFGTQERVNNSNKKEWNGMM 110 (292)
T ss_dssp CCEEEEEEC----------CE-----EEE-EEESHHHHHHHHHHHHHTCCEEEEECTTC-CCCCEEECTTSSCEEECHHH
T ss_pred cceeecccC--CCCCCccccc-----ccc-CcceeHHHHHHHHHHHcCceEEEEEecCC-cccccccccccccCcHHHHH
Confidence 467888876 6677776655 356 89999999999999999986555543322 2232 125899999
Q ss_pred HHHhcCcccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhhee
Q 003054 417 YQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLE 496 (852)
Q Consensus 417 ~~l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~ 496 (852)
.+|.+|++|+++++++++++|.+.++||.||+..+.+++++++..
T Consensus 111 ~~l~~g~~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~~----------------------------------- 155 (292)
T 1pb7_A 111 GELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTR----------------------------------- 155 (292)
T ss_dssp HHHHHTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTCC-----------------------------------
T ss_pred HHHHcCCcCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCcC-----------------------------------
Confidence 999999999999999999999999999999999999999996631
Q ss_pred cccCCCCCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHH
Q 003054 497 HRVNEDFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKML 576 (852)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL 576 (852)
+++++||
T Consensus 156 -------------------------------------------------------------------------i~~~~dl 162 (292)
T 1pb7_A 156 -------------------------------------------------------------------------ITGINDP 162 (292)
T ss_dssp -------------------------------------------------------------------------CCSTTCH
T ss_pred -------------------------------------------------------------------------CCCCcCc
Confidence 5667777
Q ss_pred HhcCC---e-EEEEeCchHHHHHHhc-C----CCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCCc
Q 003054 577 IKRGD---N-VGYQKGSFVLGILKQL-G----FDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCSK 647 (852)
Q Consensus 577 ~~~~~---~-vg~~~~s~~~~~l~~~-~----~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~ 647 (852)
...+. + +|+..++....++++. . .+..++..+++.++++++|.+|+ ++|++.+...+.|+++++|+
T Consensus 163 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~----vDa~i~d~~~~~~~~~~~~~- 237 (292)
T 1pb7_A 163 RLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNK----LHAFIWDSAVLEFEASQKCD- 237 (292)
T ss_dssp HHHSCBTTBCEECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHHCTT-
T ss_pred cccCcccceEEEEEcCchHHHHhhhcccHHHHHHHHHhhcCCCHHHHHHHHHcCC----ceEEEEcHHHHHHHHhcCCC-
Confidence 64342 3 5778888877777542 0 01224567889999999999999 99999999999999999995
Q ss_pred eEeecccccccceEEEecCCCCchhhHHHHHHhccccChhHHHHHHHccCCCCCCC
Q 003054 648 YAMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPD 703 (852)
Q Consensus 648 ~~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~i~~kw~~~~~~c~~ 703 (852)
+.+++..+...+++++++|++||++.||++|.+|.++|.+++|.+||+. ...|..
T Consensus 238 l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~~~~l~~kw~~-~~~c~~ 292 (292)
T 1pb7_A 238 LVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVR-YQECDS 292 (292)
T ss_dssp EEECSSCSEEEEECCEEETTCSSHHHHHHHHHHHHHSSHHHHHHHHHTS-SSCCCC
T ss_pred EEEcCccccCCceEEEEeCCCHHHHHHHHHHHHHHhCCCHHHHHHhhCC-CCCCCC
Confidence 8888888888899999999999999999999999999999999999996 556863
No 42
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.90 E-value=6.3e-24 Score=227.30 Aligned_cols=213 Identities=21% Similarity=0.405 Sum_probs=176.4
Q ss_pred EEEeeHHHHHHHHHHCCCccceEEEecCCCCCC-CCCChhHHHHHHhcCcccEEEeeeeeecCcceeeeccccccccceE
Q 003054 375 VTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGS-SSGSYNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVS 453 (852)
Q Consensus 375 ~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~-~ngs~~~li~~l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~ 453 (852)
+.|+++||+++|++++|+++++..++.+ .+|. .+++|++++.+|.+|++|+++++++++++|.+.++||.||+..+.+
T Consensus 68 ~~G~~vdll~~ia~~lg~~~~~~~~~~~-~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~~~ 146 (294)
T 2rc8_A 68 CYGYCIDLLEQLAEDMNFDFDLYIVGDG-KYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLG 146 (294)
T ss_dssp EESHHHHHHHHHHHHHTEEEEEEECTTC-CCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEEEE
T ss_pred ceEEhHHHHHHHHHHcCCcEEEEECCCC-cccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcceE
Confidence 7899999999999999975554443321 1222 4568999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCCCCCCCcccccchhHHHHHHHhhhccccccccc
Q 003054 454 MIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNEDFRGPAGQQVGTSFWFSFSTMVFSQRERVISN 533 (852)
Q Consensus 454 ~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~ 533 (852)
++++++..
T Consensus 147 i~~~~~~~------------------------------------------------------------------------ 154 (294)
T 2rc8_A 147 ILVRTRGT------------------------------------------------------------------------ 154 (294)
T ss_dssp EEEETTSC------------------------------------------------------------------------
T ss_pred EEEECCCC------------------------------------------------------------------------
Confidence 99997631
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHH----hcCCeEEEEeCchHHHHHHhcCCCC----cce
Q 003054 534 LARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLI----KRGDNVGYQKGSFVLGILKQLGFDE----RKL 605 (852)
Q Consensus 534 ~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~----~~~~~vg~~~~s~~~~~l~~~~~~~----~~~ 605 (852)
.|++++||. ..|++||+..|+....++++. ++. .+.
T Consensus 155 -----------------------------------~i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~~-~~~~~~~i~~ 198 (294)
T 2rc8_A 155 -----------------------------------ELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQS-FPEMHEYMRR 198 (294)
T ss_dssp -----------------------------------CCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHH-CHHHHHHHGG
T ss_pred -----------------------------------CcCChhhhhhcCcccCeEEEEEcCChHHHHHHHH-HHHHHHHHHH
Confidence 167788886 237899999999999888764 222 122
Q ss_pred eecCCHhHHHHHhhc--ccccCceeEEEechhHHHHHHhhc--CCceEeecccccccceEEEecCCCCchhhHHHHHHhc
Q 003054 606 VVYNSPEDCHELFQK--GSVNGGIAAAFDEIPYMKLLIGQY--CSKYAMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNV 681 (852)
Q Consensus 606 ~~~~~~~~~~~~l~~--g~~~~g~~a~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l 681 (852)
..+.+.++.+++|.+ |+ ++|++.+...+.+++++. | .+.+++..+...+++++++|++||++.||++|.+|
T Consensus 199 ~~~~~~~~~~~~l~~~~Gr----vDa~i~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l 273 (294)
T 2rc8_A 199 YNVPATPDGVQYLKNDPEK----LDAFIMDKALLDYEVSIDADC-KLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQY 273 (294)
T ss_dssp GCBSSHHHHHHHHHSSSCC----CSEEEEEHHHHHHHHHTCSSS-CEEECSCCEEEEEECCEECTTCTHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHhccCc----eeEEEecHHHHHHHHhhCCCC-CEEEcCCcccccceEEEecCCCHHHHHHHHHHHHH
Confidence 357899999999999 88 999999999999998764 6 48888888888899999999999999999999999
Q ss_pred cccChhHHHHHHHccCCCCCC
Q 003054 682 TEGDKMKEIEDAWFKKHSSCP 702 (852)
Q Consensus 682 ~e~G~~~~i~~kw~~~~~~c~ 702 (852)
.++|.+++|.+||+. ...|.
T Consensus 274 ~~~G~~~~l~~kw~~-~~~c~ 293 (294)
T 2rc8_A 274 KSHGFMDVLHDKWYK-VVPCG 293 (294)
T ss_dssp HHTTHHHHHHHHHCC-C----
T ss_pred HhCCCHHHHHHhhcC-CCCCC
Confidence 999999999999996 56775
No 43
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.89 E-value=9.7e-23 Score=214.11 Aligned_cols=241 Identities=20% Similarity=0.304 Sum_probs=188.1
Q ss_pred CCceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCC--CCCChhHHHHHHh
Q 003054 343 NEKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGS--SSGSYNDLVYQVF 420 (852)
Q Consensus 343 ~~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~--~ngs~~~li~~l~ 420 (852)
++++|||++... +||.+.+.++.+..+ ++.|+++||++++++++|+++++...+.+ ..|. .+++|.+++.+|.
T Consensus 1 ~~~~l~v~~~~~---pP~~~~~~~~~g~~g-~~~G~~~dl~~~i~~~lg~~~~~~~~~~~-~~g~~~~~~~~~~~~~~l~ 75 (265)
T 2v3u_A 1 GGVVLRVVTVLE---EPFVMVSENVLGKPK-KYQGFSIDVLDALSNYLGFNYEIYVAPDH-KYGSPQEDGTWNGLVGELV 75 (265)
T ss_dssp CCCEEEEEECCB---TTTBEEECCSTTCCC-EEESHHHHHHHHHHHHHTCEEEEEECTTC-CCCCBCTTSCBCHHHHHHH
T ss_pred CCeEEEEEEecc---CCeEEEecCCCCCcc-eEeEEEHHHHHHHHHHcCCcEEEEEccCC-cccccCCCCCcchHHHHHH
Confidence 478999999854 567777644333337 99999999999999999975544443322 1222 3568999999999
Q ss_pred cCcccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccC
Q 003054 421 LGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVN 500 (852)
Q Consensus 421 ~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~ 500 (852)
+|++|+++++++++++|.+.++||.||+..+.++++++..
T Consensus 76 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~---------------------------------------- 115 (265)
T 2v3u_A 76 FKRADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGT---------------------------------------- 115 (265)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC----------------------------------------
T ss_pred cCCcCeEEeeeEeehhhhccccccceeeeccEEEEEECCC----------------------------------------
Confidence 9999999988999999999999999999999999998653
Q ss_pred CCCCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhc-
Q 003054 501 EDFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKR- 579 (852)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~- 579 (852)
+|++++||.+.
T Consensus 116 --------------------------------------------------------------------~i~~~~dL~~~v 127 (265)
T 2v3u_A 116 --------------------------------------------------------------------SIQSLQDLSKQT 127 (265)
T ss_dssp --------------------------------------------------------------------CCCSHHHHHTCS
T ss_pred --------------------------------------------------------------------Cccchhhhhhhh
Confidence 17899999721
Q ss_pred CCeEEEEeCchHHHHHHhcCCCCc------------------ceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHH
Q 003054 580 GDNVGYQKGSFVLGILKQLGFDER------------------KLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLI 641 (852)
Q Consensus 580 ~~~vg~~~~s~~~~~l~~~~~~~~------------------~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~ 641 (852)
+...|...++....++++.+.... ++..+.+.++++++|.+|+ + |++.+...+.+++
T Consensus 128 ~v~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~G~----~-a~~~~~~~~~~~~ 202 (265)
T 2v3u_A 128 DIPYGTVLDSAVYQHVRMKGLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKYGN----Y-AFVWDAAVLEYVA 202 (265)
T ss_dssp SSCEECBTTSHHHHHHHHHHTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHHHHHHSS----C-EEEEEHHHHHHHH
T ss_pred cEEEEEeccHHHHHHHHhcCCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHHHHHcCC----E-EEEEcchHHHHHH
Confidence 224555556666777765433221 2356789999999999999 8 8888888888888
Q ss_pred hhc--CCceEeecccccccceEEEecCCCCchhhHHHHHHhccccChhHHHHHHHccCCCCCC
Q 003054 642 GQY--CSKYAMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCP 702 (852)
Q Consensus 642 ~~~--~~~~~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~i~~kw~~~~~~c~ 702 (852)
.+. | .+.+++..+...+++++++|++||++.||++|.+|.++|.+++|.+||+.....|.
T Consensus 203 ~~~~~~-~l~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~kw~~~~~~c~ 264 (265)
T 2v3u_A 203 INDPDC-SFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNGQCD 264 (265)
T ss_dssp HHCTTC-CEEEEC---CCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHCCCCCC--
T ss_pred hcCCCc-cEEEeccccCCcceEEEEeCCCccHHHHHHHHHHHhhCChHHHHHhhcCCCcCcCC
Confidence 754 5 48888888888899999999999999999999999999999999999999888885
No 44
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.88 E-value=4.6e-22 Score=206.50 Aligned_cols=231 Identities=19% Similarity=0.317 Sum_probs=200.8
Q ss_pred CCceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcC
Q 003054 343 NEKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLG 422 (852)
Q Consensus 343 ~~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g 422 (852)
+.++|+||+. +.|+||.+.+ .++ ++.|+++|+++++++++|+ ++++++. +|.+++.+|.+|
T Consensus 3 ~~~~l~v~~~--~~~~P~~~~~-----~~g-~~~G~~~dl~~~i~~~~g~--~~~~~~~---------~~~~~~~~l~~g 63 (245)
T 3k4u_A 3 LRGELRVGLE--PGYLPFEMKD-----KKG-NVIGFDVDLAREMAKAMGV--KLKLVPT---------SWDGLIPGLVTE 63 (245)
T ss_dssp CCSEEEEEEC--TTSTTTCEEE-----TTT-EEESHHHHHHHHHHHHHTC--EEEEEEC---------CGGGHHHHHHTT
T ss_pred cCCeEEEEEC--CCcCCeeEEC-----CCC-CCccchHHHHHHHHHHhCC--eEEEEEc---------cHHHHHHHHhCC
Confidence 3578999998 7888998876 567 9999999999999999997 4555553 499999999999
Q ss_pred cccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCCC
Q 003054 423 EFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNED 502 (852)
Q Consensus 423 ~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~ 502 (852)
++|+++++++.+++|.+.+.||.||...+.++++++....
T Consensus 64 ~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~---------------------------------------- 103 (245)
T 3k4u_A 64 KFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEK---------------------------------------- 103 (245)
T ss_dssp SCSEECSSCBCCHHHHTTSEECSCSEEECEEEEEETTTTT----------------------------------------
T ss_pred CcCEEEecCcCCHHHHhhcCcchhhheeceEEEEECCccc----------------------------------------
Confidence 9999988899999999999999999999999999976322
Q ss_pred CCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCCe
Q 003054 503 FRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDN 582 (852)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~ 582 (852)
.+++++||...|++
T Consensus 104 ------------------------------------------------------------------~i~~~~dL~~~g~~ 117 (245)
T 3k4u_A 104 ------------------------------------------------------------------GVKSYKDLDKPELT 117 (245)
T ss_dssp ------------------------------------------------------------------TCCSGGGGCCSSCE
T ss_pred ------------------------------------------------------------------ccCCHHHhccCCcE
Confidence 28899999766889
Q ss_pred EEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcC-CceEeecccccccceE
Q 003054 583 VGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYC-SKYAMIEPKFKTAGFG 661 (852)
Q Consensus 583 vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~ 661 (852)
||+..|+....++.+. .+..+++.+++.++++++|.+|+ ++|++.+...+.+++.+.. ..+..++..+...+++
T Consensus 118 i~v~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (245)
T 3k4u_A 118 LVTKFGVSAEYAAKRL-FKNAKLKTYDTEAEAVQEVLNGK----ADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLG 192 (245)
T ss_dssp EEEETTSHHHHHHHHH-CSSSEEEEESSHHHHHHHHHSSS----SEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEEC
T ss_pred EEEeCCcHHHHHHHhh-CCcCCEEEeCCHHHHHHHHHcCC----CcEEEEcHHHHHHHHhcCCccceeecCCCcccccEE
Confidence 9999999999988875 55678899999999999999999 9999999988988887763 3577778888888999
Q ss_pred EEecCCCC-chhhHHHHHHhccccChhHHHHHHHccCCCCCCC
Q 003054 662 FVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPD 703 (852)
Q Consensus 662 ~~~~k~sp-l~~~in~~il~l~e~G~~~~i~~kw~~~~~~c~~ 703 (852)
++++|++| ++..||++|.++.++|.+++|.+||+.....+..
T Consensus 193 ~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~~~~~ 235 (245)
T 3k4u_A 193 WAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTKWLEK 235 (245)
T ss_dssp CEECTTCHHHHHHHHHHHHHHHHHSHHHHHHHHHHTCCSGGGC
T ss_pred EEEcCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhcCccccchh
Confidence 99999998 9999999999999999999999999976544433
No 45
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.88 E-value=3.5e-22 Score=206.22 Aligned_cols=224 Identities=20% Similarity=0.315 Sum_probs=191.3
Q ss_pred CceEEEeeecccCcccceEE-eeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcC
Q 003054 344 EKKLRIGVPVKKGFSDFVNV-TIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLG 422 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~~-~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g 422 (852)
.++|+||+. +.|+||.+. + .++ ++.|+++|+++++++++|++++ ++.. +|.+++.+|.+|
T Consensus 2 ~~~l~v~~~--~~~~P~~~~~~-----~~g-~~~G~~~dl~~~i~~~~g~~~~--~~~~---------~~~~~~~~l~~g 62 (237)
T 3kzg_A 2 SLNLTIGTS--KFNPPFEVWSG-----NNS-SLYGFDIDLMQEICRRLHATCT--FEAY---------IFDDLFPALKNR 62 (237)
T ss_dssp CCEEEEEEE--SEETTTEECCC-----TTS-CCBSHHHHHHHHHHHHTTCEEE--EEEE---------CGGGHHHHHHTT
T ss_pred CceEEEEEC--CCCCCeEEEeC-----CCC-CEeeehHHHHHHHHHHhCCceE--EEEc---------CHHHHHHHHhCC
Confidence 367999998 668899887 4 566 8999999999999999997544 4443 389999999999
Q ss_pred cccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCCC
Q 003054 423 EFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNED 502 (852)
Q Consensus 423 ~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~ 502 (852)
++|+++++++.+++|.+.++||.||...+.++++++..
T Consensus 63 ~~D~~~~~~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------ 100 (237)
T 3kzg_A 63 EVDLVIASMIITDERKKHFIFSLPYMESNSQYITTVDS------------------------------------------ 100 (237)
T ss_dssp SSSEECSSCBCCTTGGGTCEECCCSBCCEEEEEEETTC------------------------------------------
T ss_pred CCCEEEEccccChhHhccceeeeeeeecceEEEEECCC------------------------------------------
Confidence 99999888999999999999999999999999999653
Q ss_pred CCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCCe
Q 003054 503 FRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDN 582 (852)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~ 582 (852)
++++++||. |++
T Consensus 101 ------------------------------------------------------------------~~~~~~dL~--g~~ 112 (237)
T 3kzg_A 101 ------------------------------------------------------------------KISTFDDLH--GKK 112 (237)
T ss_dssp ------------------------------------------------------------------SCCSGGGGT--TCE
T ss_pred ------------------------------------------------------------------CCCCHHHhC--CCE
Confidence 178999997 899
Q ss_pred EEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcC------C-ceEeecccc
Q 003054 583 VGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYC------S-KYAMIEPKF 655 (852)
Q Consensus 583 vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~------~-~~~~v~~~~ 655 (852)
||+..|+....++.+. ++..+++.+++.++++++|.+|+ ++|++.+...+.+++++.. . .+.+++..+
T Consensus 113 i~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 187 (237)
T 3kzg_A 113 IGVRKGTPYARQVLSE-NRNNQVIFYELIQDMLLGLSNNQ----VDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKI 187 (237)
T ss_dssp EEEETTSTHHHHHHHT-CSSCEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEE
T ss_pred EEEecCCHHHHHHHHh-CCCCcEEEeCCHHHHHHHHHcCC----CCEEEeCcHHHHHHHHhCCccccccCCceEEecCcc
Confidence 9999999977777664 45568889999999999999999 9999999999999998755 2 578888777
Q ss_pred -cccceEEEecCCCC-chhhHHHHHHhccccChhHHHHHHHccCCCCC
Q 003054 656 -KTAGFGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKKHSSC 701 (852)
Q Consensus 656 -~~~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~i~~kw~~~~~~c 701 (852)
...+++++++|++| +++.||++|.+|.++|.+++|.+||+.....|
T Consensus 188 ~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~G~~~~i~~k~~~~~~~~ 235 (237)
T 3kzg_A 188 SIGEGYSIMANPDQFVLIKKINKILLEMEADGTYLRLYSEYFEGHHHH 235 (237)
T ss_dssp ECTTCBCCEECGGGHHHHHHHHHHHHHHHHSSHHHHHHHHHC------
T ss_pred ccCccEEEEEcCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHhCccccc
Confidence 88899999999966 99999999999999999999999999755444
No 46
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.88 E-value=1.4e-21 Score=203.48 Aligned_cols=223 Identities=18% Similarity=0.363 Sum_probs=193.8
Q ss_pred CCCceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhc
Q 003054 342 TNEKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFL 421 (852)
Q Consensus 342 ~~~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~ 421 (852)
...++|+||+. +.|+||.+.. ++ +..|+++|+++++++++|++++++. . +|.+++.+|.+
T Consensus 21 ~~~~~l~v~~~--~~~~P~~~~~------~g-~~~G~~~dl~~~i~~~~g~~~~~~~--~---------~~~~~~~~l~~ 80 (249)
T 4f3p_A 21 SMAKELVVGTD--TSFMPFEFKQ------GD-KYVGFDLDLWAEIAKGAGWTYKIQP--M---------DFAGLIPALQT 80 (249)
T ss_dssp ---CCEEEEEE--SCBTTTBEEE------TT-EEESHHHHHHHHHHHHHTCCEEEEE--E---------CGGGHHHHHHT
T ss_pred ccCceEEEEeC--CCCCCeEEec------CC-eEEEEhHHHHHHHHHHcCCceEEEe--c---------CHHHHHHHHHC
Confidence 34678999998 6788888753 56 8999999999999999997555544 3 38999999999
Q ss_pred CcccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCC
Q 003054 422 GEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNE 501 (852)
Q Consensus 422 g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~ 501 (852)
|++|+++++++.+++|.+.++||.||...+.++++++...
T Consensus 81 g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~---------------------------------------- 120 (249)
T 4f3p_A 81 QNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNT---------------------------------------- 120 (249)
T ss_dssp TSCSEEEEEEECCHHHHTTEEECSCCEEEEEEEEEETTCC----------------------------------------
T ss_pred CCCCEEEeccccCHHHHcCcceecceeeccEEEEEECCCC----------------------------------------
Confidence 9999998889999999999999999999999999986632
Q ss_pred CCCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCC
Q 003054 502 DFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGD 581 (852)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~ 581 (852)
.+++++||. |+
T Consensus 121 -------------------------------------------------------------------~i~~~~dL~--g~ 131 (249)
T 4f3p_A 121 -------------------------------------------------------------------TIKSIDDLN--GK 131 (249)
T ss_dssp -------------------------------------------------------------------SCCSSGGGT--TS
T ss_pred -------------------------------------------------------------------CcCChHHhC--CC
Confidence 288999996 89
Q ss_pred eEEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcC-CceEeecccccccce
Q 003054 582 NVGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYC-SKYAMIEPKFKTAGF 660 (852)
Q Consensus 582 ~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 660 (852)
+||+..|+....++++. ++..+++.+++.++++++|.+|+ +||++.+...+.+++++.. ..+.+++..+...++
T Consensus 132 ~i~v~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 206 (249)
T 4f3p_A 132 VIAAKTGTATIDWIKAH-LKPKEIRQFPNIDQAYLALEAGR----VDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKY 206 (249)
T ss_dssp EEEEETTSHHHHHHHHH-CCCSEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEE
T ss_pred EEEEeCCChHHHHHHhc-CCCceEEEcCCHHHHHHHHHcCC----eeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccE
Confidence 99999999999988875 45668889999999999999999 9999999999999988763 357777888888899
Q ss_pred EEEecCCCCchhhHHHHHHhccccChhHHHHHHHccCC
Q 003054 661 GFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKH 698 (852)
Q Consensus 661 ~~~~~k~spl~~~in~~il~l~e~G~~~~i~~kw~~~~ 698 (852)
+++++|++|+++.||++|.++.++|.+++|.+||++..
T Consensus 207 ~~~~~k~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 244 (249)
T 4f3p_A 207 GIGFPKGSPLVAKVNAELARMKADGRYAKIYKKWFGSE 244 (249)
T ss_dssp EEEEETTCTHHHHHHHHHHHHHHHTHHHHHHHHHHSSC
T ss_pred EEEEcCCchHHHHHHHHHHHHHhCCcHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999754
No 47
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.87 E-value=1.4e-21 Score=201.17 Aligned_cols=219 Identities=17% Similarity=0.334 Sum_probs=187.6
Q ss_pred CceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCc
Q 003054 344 EKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGE 423 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~ 423 (852)
.++||||+. +.|+||.+.+ .++ ++.|+++|+++++++++|++ ++++.. +|.+++.+|.+|+
T Consensus 4 a~~l~v~~~--~~~~P~~~~~-----~~g-~~~G~~~dl~~~i~~~~g~~--~~~~~~---------~~~~~~~~l~~g~ 64 (232)
T 3i6v_A 4 ADTVRMGTE--GAYPPYNFIN-----DAG-EVDGFERELGDELCKRAGLT--CEWVKN---------DWDSIIPNLVSGN 64 (232)
T ss_dssp --CEEEEEC--SEETTTEEEC-----TTS-CEESHHHHHHHHHHHHHTCC--EEEEEC---------CGGGHHHHHHTTS
T ss_pred CCEEEEEEC--CCCCCeeEEC-----CCC-CEeeehHHHHHHHHHHcCCc--eEEEEC---------CHHHHHHHHHCCC
Confidence 578999987 7788998876 567 89999999999999999975 555553 4999999999999
Q ss_pred ccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCCCC
Q 003054 424 FDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNEDF 503 (852)
Q Consensus 424 ~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~~ 503 (852)
+|+++++++.+++|.+.++||.||...+.++++++..
T Consensus 65 ~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------- 101 (232)
T 3i6v_A 65 YDTIIAGMSITDERDEVIDFTQNYIPPTASSYVATSD------------------------------------------- 101 (232)
T ss_dssp CSEECSSCBCCHHHHTTSEEEEEEECCCEEEEEESST-------------------------------------------
T ss_pred CCEEEeCCcCCHHHHhhcCcccccccCCeEEEEECCC-------------------------------------------
Confidence 9999889999999999999999999999999998551
Q ss_pred CCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCCeE
Q 003054 504 RGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNV 583 (852)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~v 583 (852)
++||. | +|
T Consensus 102 ---------------------------------------------------------------------~~dL~--g-~i 109 (232)
T 3i6v_A 102 ---------------------------------------------------------------------GADLS--G-IV 109 (232)
T ss_dssp ---------------------------------------------------------------------TCCTT--S-EE
T ss_pred ---------------------------------------------------------------------hHHhC--C-CE
Confidence 34564 7 99
Q ss_pred EEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCCceEeecc-cccccceEE
Q 003054 584 GYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCSKYAMIEP-KFKTAGFGF 662 (852)
Q Consensus 584 g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~ 662 (852)
|+..|+....++++. ..+++.+++.++++++|.+|+ +||++.+...+.+++++....+.+++. .+...++++
T Consensus 110 gv~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (232)
T 3i6v_A 110 AAQTATIQAGYIAES---GATLVEFATPEETIAAVRNGE----ADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGM 182 (232)
T ss_dssp EEETTSHHHHHHHHS---SSEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEE
T ss_pred EEecCchHHHHHHhc---CCeEEEeCCHHHHHHHHHcCC----cCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEE
Confidence 999999999999886 457889999999999999999 999999999999999887334777665 456788999
Q ss_pred EecCCCC-chhhHHHHHHhccccChhHHHHHHHccCCCCCCC
Q 003054 663 VFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPD 703 (852)
Q Consensus 663 ~~~k~sp-l~~~in~~il~l~e~G~~~~i~~kw~~~~~~c~~ 703 (852)
+++|++| |++.||++|.+|.++|.+++|.+||++....|..
T Consensus 183 ~~~k~~~~l~~~ln~~l~~l~~~G~~~~i~~k~~~~~~~~~~ 224 (232)
T 3i6v_A 183 GLRESDGELRGKFDAAITSMKEDGTLNTMIKKWFGEDAAVYE 224 (232)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHCTTSCCC-
T ss_pred EEeCCCHHHHHHHHHHHHHHHHCChHHHHHHHHcCCCCCccc
Confidence 9999987 9999999999999999999999999985544443
No 48
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.87 E-value=1.8e-21 Score=204.39 Aligned_cols=237 Identities=18% Similarity=0.332 Sum_probs=186.6
Q ss_pred CceEEEeeecccCcccceEEeeC--CCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCC-CCCC--CCC-ChhHHHH
Q 003054 344 EKKLRIGVPVKKGFSDFVNVTID--PKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQ-PDGS--SSG-SYNDLVY 417 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~~~~d--~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~-~~g~--~ng-s~~~li~ 417 (852)
+++|+|++.. |+||.+.+.+ +..+++ ++.|+++||++++++++|+++ +++.... ..|. .++ +|.+++.
T Consensus 3 ~~~l~v~~~~---~pP~~~~~~~~~~~~~~g-~~~G~~~dl~~~ia~~lg~~~--~~~~~~~~~~g~~~~~~~~~~~~~~ 76 (263)
T 1mqi_A 3 NKTVVVTTIL---ESPYVMMKKNHEMLEGNE-RYEGYCVDLAAEIAKHCGFKY--KLTIVGDGKYGARDADTKIWNGMVG 76 (263)
T ss_dssp CCCEEEEECC---BTTTBEECTTGGGCCGGG-GEESHHHHHHHHHHHHHTCCE--EEEECTTCCCCCBCTTTCCBCHHHH
T ss_pred CeEEEEEEec---CCCcEEEecCcccccCCC-ceeeeHHHHHHHHHHHcCceE--EEEEccccccCccCCCCCCcHHHHH
Confidence 5789999973 6778776521 111247 899999999999999999755 4444321 1111 222 7999999
Q ss_pred HHhcCcccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheec
Q 003054 418 QVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEH 497 (852)
Q Consensus 418 ~l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~ 497 (852)
+|.+|++|+++++++++++|.+.++||.||+..+.++++++..
T Consensus 77 ~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~------------------------------------- 119 (263)
T 1mqi_A 77 ELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT------------------------------------- 119 (263)
T ss_dssp HHHTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC-------------------------------------
T ss_pred HHHcCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCcc-------------------------------------
Confidence 9999999999988999999999999999999999999999653
Q ss_pred ccCCCCCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHH
Q 003054 498 RVNEDFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLI 577 (852)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~ 577 (852)
+|++++||.
T Consensus 120 -----------------------------------------------------------------------~i~~~~dL~ 128 (263)
T 1mqi_A 120 -----------------------------------------------------------------------PIESAEDLS 128 (263)
T ss_dssp -----------------------------------------------------------------------SCCSHHHHH
T ss_pred -----------------------------------------------------------------------ccCCHHHHh
Confidence 178999997
Q ss_pred hcCCe---EEEEeCchHHHHHHhcCCC-----------CcceeecCCHhHHHHHh--hcccccCceeEEEechhHHHHHH
Q 003054 578 KRGDN---VGYQKGSFVLGILKQLGFD-----------ERKLVVYNSPEDCHELF--QKGSVNGGIAAAFDEIPYMKLLI 641 (852)
Q Consensus 578 ~~~~~---vg~~~~s~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~l--~~g~~~~g~~a~~~~~~~~~~~~ 641 (852)
|++ +|+..+.....++.+.++. ..+++.+.+.++++++| .+|+ +|++.+...+.+++
T Consensus 129 --g~~~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-----da~~~~~~~~~~~~ 201 (263)
T 1mqi_A 129 --KQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGK-----YAYLLESTMNEYIE 201 (263)
T ss_dssp --TCSSSEEECBSSSHHHHHHHHCCSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTTTS-----EEEEEEHHHHHHHT
T ss_pred --cccCeeEEEEeccHHHHHHHhccchhHHHHHHHHhhCCCceecCCHHHHHHHHhhcCCc-----EEEEechHHHHHHH
Confidence 665 6755444444445443222 12467788999999999 7777 58888888888888
Q ss_pred hhc-CCceEeecccccccceEEEecCCCCchhhHHHHHHhccccChhHHHHHHHccCCCCCC
Q 003054 642 GQY-CSKYAMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCP 702 (852)
Q Consensus 642 ~~~-~~~~~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~i~~kw~~~~~~c~ 702 (852)
++. | .+.+++..+...+++++++|+++|++.||++|.+|.++|.+++|.+||+.....|+
T Consensus 202 ~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~k~~~~~~~C~ 262 (263)
T 1mqi_A 202 QRKPC-DTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECG 262 (263)
T ss_dssp TSTTC-CEEEESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHTTTCSCC
T ss_pred hcCCC-ceEEcCCcccccceEEEEeCCCccHHHHHHHHHHHHhcccHHHHHHHHcCCCCCCC
Confidence 776 5 47778878888889999999999999999999999999999999999999888896
No 49
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.87 E-value=3.2e-21 Score=203.10 Aligned_cols=221 Identities=17% Similarity=0.296 Sum_probs=194.2
Q ss_pred CceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCc
Q 003054 344 EKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGE 423 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~ 423 (852)
.++||||+. +.|+||.+.+ .++ ...|+++|+++++++++|+ +++++.. +|.+++.+|.+|+
T Consensus 20 ~~~l~v~~~--~~~~P~~~~~-----~~g-~~~G~~~dl~~~i~~~~g~--~~~~~~~---------~~~~~~~~l~~g~ 80 (268)
T 3hv1_A 20 EKKIKIGFD--ATFVPMGYEE-----KDG-SYIGFDIDLANAVFKLYGI--DVEWQAI---------DWDMKETELKNGT 80 (268)
T ss_dssp HTEEEEEEC--TEETTTEEEC-----TTS-CEECHHHHHHHHHHHTTTC--EEEEEEC---------CGGGHHHHHHHTS
T ss_pred CCcEEEEEC--CCCCCceEEC-----CCC-CEEEehHHHHHHHHHHhCC--cEEEEEC---------CHHHHHHHHHCCC
Confidence 678999997 6788898876 467 8999999999999999997 4555553 3899999999999
Q ss_pred ccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCCCC
Q 003054 424 FDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNEDF 503 (852)
Q Consensus 424 ~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~~ 503 (852)
+|++++++..+++|.+.++||.||...+.++++++.. .
T Consensus 81 ~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~--~---------------------------------------- 118 (268)
T 3hv1_A 81 IDLIWNGYSVTDERKQSADFTEPYMVNEQVLVTKKSS--G---------------------------------------- 118 (268)
T ss_dssp CSEECSSCBCCHHHHTTCEECCCCEEECEEEEEEGGG--C----------------------------------------
T ss_pred CCEEEecCccCHHHHhcCcCcHHHeeCceEEEEECCC--C----------------------------------------
Confidence 9999888999999999999999999999999999763 2
Q ss_pred CCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCCeE
Q 003054 504 RGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNV 583 (852)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~v 583 (852)
|++++||. |++|
T Consensus 119 ------------------------------------------------------------------i~~~~dL~--g~~i 130 (268)
T 3hv1_A 119 ------------------------------------------------------------------IDSVAGMA--GKTL 130 (268)
T ss_dssp ------------------------------------------------------------------CCSSGGGT--TCCE
T ss_pred ------------------------------------------------------------------CCCHHHhC--CCEE
Confidence 88999996 8999
Q ss_pred EEEeCchHHHHHHhcC------CCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcC--CceEeecccc
Q 003054 584 GYQKGSFVLGILKQLG------FDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYC--SKYAMIEPKF 655 (852)
Q Consensus 584 g~~~~s~~~~~l~~~~------~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~--~~~~~v~~~~ 655 (852)
|+..|+....++.+.. ++..+++.+++.++++++|.+|+ +||++.+...+.+++++.. ..+.+++..+
T Consensus 131 ~v~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 206 (268)
T 3hv1_A 131 GAQAGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGR----IDGLLIDRVYANYYLEKSGVLDQYNVMPAGY 206 (268)
T ss_dssp EEETTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTS----CSEEEEEHHHHHHHHHHTTCGGGEEEEECSS
T ss_pred EEEeCCchHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCC----CCEEEeCHHHHHHHHHhCCCCCceEECCCCC
Confidence 9999999998887542 33457888999999999999999 9999999999999988763 4577888878
Q ss_pred cccceEEEecCCCC-chhhHHHHHHhccccChhHHHHHHHccC
Q 003054 656 KTAGFGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKK 697 (852)
Q Consensus 656 ~~~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~i~~kw~~~ 697 (852)
...+++++++|+++ ++..||++|.++.++|.+++|.+||++.
T Consensus 207 ~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~ 249 (268)
T 3hv1_A 207 EGESFAVGARKVDKTLIKKINQGFETLYKNGEFQKISNKWFGE 249 (268)
T ss_dssp CCEEECCEECTTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHSS
T ss_pred CCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHhcCC
Confidence 88899999999987 9999999999999999999999999974
No 50
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.86 E-value=1.7e-21 Score=201.26 Aligned_cols=222 Identities=15% Similarity=0.238 Sum_probs=191.5
Q ss_pred CceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCc
Q 003054 344 EKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGE 423 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~ 423 (852)
.+.|+||+. +.|+||.+.+ .++ +..|+++|+++++++++|+ ++++++. +|.+++.+|.+|+
T Consensus 14 ~~~l~v~~~--~~~~P~~~~~-----~~g-~~~G~~~dl~~~i~~~~g~--~~~~~~~---------~~~~~~~~l~~g~ 74 (239)
T 3kbr_A 14 SGVLRVATT--GDYKPFSYRT-----EEG-GYAGFDVDMAQRLAESLGA--KLVVVPT---------SWPNLMRDFADDR 74 (239)
T ss_dssp HTEEEEEEC--SEETTTEEEC-----TTS-CEESHHHHHHHHHHHHTTC--EEEEEEC---------CTTTHHHHHHTTC
T ss_pred CCeEEEEEC--CCCCCeeEEC-----CCC-CEEeehHHHHHHHHHHHCC--ceEEEEe---------CHHHHHHHHHCCC
Confidence 578999997 6788898876 467 8999999999999999997 4555553 4899999999999
Q ss_pred ccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCCCC
Q 003054 424 FDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNEDF 503 (852)
Q Consensus 424 ~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~~ 503 (852)
+|+++++++.+++|.+.++||.||...+.++++++....
T Consensus 75 ~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~----------------------------------------- 113 (239)
T 3kbr_A 75 FDIAMSGISINLERQRQAYFSIPYLRDGKTPITLCSEEA----------------------------------------- 113 (239)
T ss_dssp CSEECSSCBCCHHHHTTCEECSCSEEECEEEEEEGGGGG-----------------------------------------
T ss_pred cCEEEeCCcCCHHHcCccccchHHhccCcEEEEECCccc-----------------------------------------
Confidence 999988899999999999999999999999999976322
Q ss_pred CCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCCeE
Q 003054 504 RGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNV 583 (852)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~v 583 (852)
.+++++||...|++|
T Consensus 114 -----------------------------------------------------------------~i~~~~dL~~~g~~v 128 (239)
T 3kbr_A 114 -----------------------------------------------------------------RFQTLEQIDQPGVTA 128 (239)
T ss_dssp -----------------------------------------------------------------GGSSHHHHSSTTCEE
T ss_pred -----------------------------------------------------------------ccCCHHHhcCCCcEE
Confidence 288999997668899
Q ss_pred EEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCCceEeec--ccccccceE
Q 003054 584 GYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCSKYAMIE--PKFKTAGFG 661 (852)
Q Consensus 584 g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~ 661 (852)
|+..|+....++++. ++..+++.+++.++++++|.+|+ +||++.+...+.++++++.. +.++. ..+...+++
T Consensus 129 ~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~gr----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 202 (239)
T 3kbr_A 129 IVNPGGTNEKFARAN-LKKARILVHPDNVTIFQQIVDGK----ADLMMTDAIEARLQSRLHPE-LCAVHPQQPFDFAEKA 202 (239)
T ss_dssp EECTTSHHHHHHHHH-CSSSEEEECCCTTTHHHHHHTTS----CSEEEEEHHHHHHHHHHCTT-EEECCCC-CCCCEEEC
T ss_pred EEcCCCcHHHHHHHh-CCCCceEEeCCHHHHHHHHHcCC----cCEEEEchHHHHHHHHhCCC-cEEecCCCCccccceE
Confidence 999999999998875 56678889999999999999999 99999999999999988764 55543 446778899
Q ss_pred EEecCCCCchhhHHHHHHhccccChhHHHHHHHcc
Q 003054 662 FVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFK 696 (852)
Q Consensus 662 ~~~~k~spl~~~in~~il~l~e~G~~~~i~~kw~~ 696 (852)
++++|+..+++.||++|.+|.++|.+++|.++|++
T Consensus 203 ~~~~k~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~ 237 (239)
T 3kbr_A 203 YLLPRDEAFKRYVDQWLHIAEQSGLLRQRMEHWLE 237 (239)
T ss_dssp CEECSCHHHHHHHHHHHHHHHHHTHHHHHHHHHC-
T ss_pred EEEcCCHHHHHHHHHHHHHHHHCCcHHHHHHHHhc
Confidence 99999444999999999999999999999999995
No 51
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.86 E-value=4.3e-21 Score=198.55 Aligned_cols=222 Identities=17% Similarity=0.285 Sum_probs=193.6
Q ss_pred CCceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcC
Q 003054 343 NEKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLG 422 (852)
Q Consensus 343 ~~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g 422 (852)
..++|+||+. +.|+||.+.+ .++ ++.|+++|+++++++++|+ ++++++. +|.+++.+|.+|
T Consensus 9 ~~~~l~v~~~--~~~~P~~~~~-----~~g-~~~G~~~dl~~~i~~~~g~--~~~~~~~---------~~~~~~~~l~~g 69 (242)
T 3del_B 9 NSEKFIVGTN--ATYPPFEFVD-----KRG-EVVGFDIDLAREISNKLGK--TLDVREF---------SFDALILNLKQH 69 (242)
T ss_dssp --CEEEEEEC--SCBTTTBEEC-----TTS-CEESHHHHHHHHHHHHHTC--EEEEEEC---------CGGGHHHHHHTT
T ss_pred cCCcEEEEeC--CCCCCeeEEC-----CCC-CEEEeeHHHHHHHHHHcCC--ceEEEEc---------CHHHHHHHHhCC
Confidence 3578999995 7788998876 467 8999999999999999996 5555553 489999999999
Q ss_pred cccEEEeeeeeecCcceeeecccccc--ccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccC
Q 003054 423 EFDAVVGDITIVFNRSNYVDFTLPYT--ESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVN 500 (852)
Q Consensus 423 ~~D~~~g~~~it~~r~~~vdft~p~~--~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~ 500 (852)
++|++++++..+++|.+.++| .||+ ..+.++++++..
T Consensus 70 ~~D~~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~---------------------------------------- 108 (242)
T 3del_B 70 RIDAVITGMSITPSRLKEILM-IPYYGEEIKHLVLVFKGE---------------------------------------- 108 (242)
T ss_dssp SSSEECSSBBCCHHHHTTEEE-EEEEEEEESEEEEEEESC----------------------------------------
T ss_pred CcCEEEecCcCCHHHHhcccc-eeeeecCCceEEEEeCCC----------------------------------------
Confidence 999998889999999999999 9999 889999998662
Q ss_pred CCCCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcC
Q 003054 501 EDFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRG 580 (852)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~ 580 (852)
.+++++||. |
T Consensus 109 --------------------------------------------------------------------~i~~~~dL~--g 118 (242)
T 3del_B 109 --------------------------------------------------------------------NKHPLPLTQ--Y 118 (242)
T ss_dssp --------------------------------------------------------------------CSCCCCGGG--S
T ss_pred --------------------------------------------------------------------CCCCHHHhC--C
Confidence 278899996 8
Q ss_pred CeEEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCCceEeecccccccc-
Q 003054 581 DNVGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCSKYAMIEPKFKTAG- 659 (852)
Q Consensus 581 ~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 659 (852)
++||+..|+....++.+ .+..+++.+++.++++++|.+|+ +||++.+...+.+++++... +.+++..+....
T Consensus 119 ~~i~v~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~L~~g~----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 191 (242)
T 3del_B 119 RSVAVQTGTYQEAYLQS--LSEVHIRSFDSTLEVLMEVMHGK----SPVAVLEPSIAQVVLKDFPA-LSTATIDLPEDQW 191 (242)
T ss_dssp SCEEEETTSHHHHHHHH--STTCCEEEESSHHHHHHHHHTTS----SSEEEECHHHHHHHGGGCTT-EEEEEEECCGGGC
T ss_pred CEEEEEcCcHHHHHHHh--CCCceEEEECCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhCCC-eEEecCccCcccc
Confidence 99999999999999987 56678889999999999999999 99999999999999988775 777777777777
Q ss_pred ---eEEEecCCCC-chhhHHHHHHhccccChhHHHHHHHccCCCCC
Q 003054 660 ---FGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKKHSSC 701 (852)
Q Consensus 660 ---~~~~~~k~sp-l~~~in~~il~l~e~G~~~~i~~kw~~~~~~c 701 (852)
++++++|++| +++.||++|.++.++|.+++|.+||+.....+
T Consensus 192 ~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~~~ 237 (242)
T 3del_B 192 VLGYGIGVASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNNLEH 237 (242)
T ss_dssp EEEEEEEEETTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTGGGCSS
T ss_pred cceEEEEEeCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHCCCCCcc
Confidence 9999999988 99999999999999999999999999754433
No 52
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.85 E-value=7.4e-21 Score=194.27 Aligned_cols=218 Identities=22% Similarity=0.362 Sum_probs=184.7
Q ss_pred ceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcc
Q 003054 345 KKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEF 424 (852)
Q Consensus 345 ~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~ 424 (852)
++||||+. +.|+||.+.+ .++ +..|+++|+++++++++|++ +++++. +|.+++.+|.+|++
T Consensus 2 ~~l~v~~~--~~~~P~~~~~-----~~g-~~~G~~~dl~~~i~~~~g~~--~~~~~~---------~~~~~~~~l~~g~~ 62 (227)
T 3tql_A 2 DTIKFATE--ATYPPYVYMG-----PSG-QVEGFGADIVKAVCKQMQAV--CTISNQ---------PWDSLIPSLKLGKF 62 (227)
T ss_dssp CEEEEEEC--SCBTTTBEEC-------C-CEESHHHHHHHHHHHHTTCE--EEEEEC---------CHHHHHHHHHHTSC
T ss_pred ceEEEEEc--CCCCCeeEEC-----CCC-CcccchHHHHHHHHHHhCCe--EEEEeC---------CHHHHHHHHhCCCC
Confidence 57999997 5788898876 467 89999999999999999975 445443 49999999999999
Q ss_pred cEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCCCCC
Q 003054 425 DAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNEDFR 504 (852)
Q Consensus 425 D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~~~ 504 (852)
|+++++++.+++|...+.||.||...+.++++++....
T Consensus 63 D~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~~~------------------------------------------ 100 (227)
T 3tql_A 63 DALFGGMNITTARQKEVDFTDPYYTNSVSFIADKNTPL------------------------------------------ 100 (227)
T ss_dssp SEECSSCBCCTTGGGTEEECSCSBCCEEEEEEETTSCC------------------------------------------
T ss_pred CEEEecCcCCHhHHhheecccceeccceEEEEeCCCCC------------------------------------------
Confidence 99988899999999999999999999999999976321
Q ss_pred CCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCCeEE
Q 003054 505 GPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNVG 584 (852)
Q Consensus 505 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~vg 584 (852)
+++++||. |++||
T Consensus 101 -----------------------------------------------------------------~~~~~dL~--g~~v~ 113 (227)
T 3tql_A 101 -----------------------------------------------------------------TLSKQGLK--GKIIG 113 (227)
T ss_dssp -----------------------------------------------------------------CCSTTTTT--TCEEE
T ss_pred -----------------------------------------------------------------CCCHHHhC--CCEEE
Confidence 37889996 89999
Q ss_pred EEeCchHHHHHHhcCCCC-cceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCC-ceEeecccccc-----
Q 003054 585 YQKGSFVLGILKQLGFDE-RKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCS-KYAMIEPKFKT----- 657 (852)
Q Consensus 585 ~~~~s~~~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~-~~~~v~~~~~~----- 657 (852)
+..|+....++++.. +. .+++.+++.++++++|.+|+ +||++.+...+.+++++... .+.+++..+..
T Consensus 114 ~~~g~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~gr----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (227)
T 3tql_A 114 VQGGTTFDSYLQDSF-GNSITIQRYPSEEDALMDLTSGR----VDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFG 188 (227)
T ss_dssp EETTSHHHHHHHHHH-GGGSEEEEESSHHHHHHHHTTTS----SSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCC
T ss_pred EEecccHHHHHHHhc-cccceEEEcCCHHHHHHHHHcCC----cCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccc
Confidence 999999998887752 33 67889999999999999999 99999999999998887643 36666544333
Q ss_pred cceEEEecCCCC-chhhHHHHHHhccccChhHHHHHHHc
Q 003054 658 AGFGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWF 695 (852)
Q Consensus 658 ~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~i~~kw~ 695 (852)
.+++++++|++| +++.||++|.++.++|.++++.+||+
T Consensus 189 ~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~ 227 (227)
T 3tql_A 189 KGVGIAVKKGNQALLLKLNKALAAIKANGVYAAIVQKYF 227 (227)
T ss_dssp SCBCCEEETTCHHHHHHHHHHHHHHHHTSHHHHHHHHHC
T ss_pred cceEEEEcCCCHHHHHHHHHHHHHHHhCChHHHHHHhhC
Confidence 355999999988 99999999999999999999999996
No 53
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.85 E-value=2e-20 Score=192.02 Aligned_cols=222 Identities=22% Similarity=0.340 Sum_probs=188.4
Q ss_pred CceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCc
Q 003054 344 EKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGE 423 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~ 423 (852)
.++|+||+. + |+||.+.+.| .++ ++.|+++|+++++++++|+ +++++... +|.+++.+|.+|+
T Consensus 3 ~~~l~v~~~--~-~~P~~~~~~~---~~g-~~~G~~~dl~~~i~~~~g~--~~~~~~~~--------~~~~~~~~l~~g~ 65 (233)
T 1ii5_A 3 AMALKVGVV--G-NPPFVFYGEG---KNA-AFTGISLDVWRAVAESQKW--NSEYVRQN--------SISAGITAVAEGE 65 (233)
T ss_dssp SCCEEEEEC--C-CTTTCEEC---------CEESHHHHHHHHHHHHHTC--CEEEEECS--------CHHHHHHHHHTTS
T ss_pred CceEEEEec--C-CCCeEEEecC---CCC-CEEEEeHHHHHHHHHHcCC--cEEEEEeC--------CHHHHHHHHHCCC
Confidence 567999997 2 7788876200 456 8999999999999999996 55555542 5999999999999
Q ss_pred ccEEEeeeeeecCcc--eeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCC
Q 003054 424 FDAVVGDITIVFNRS--NYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNE 501 (852)
Q Consensus 424 ~D~~~g~~~it~~r~--~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~ 501 (852)
+|+++++++.+++|. +.++|+.||.....++++++....
T Consensus 66 ~D~~~~~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~~--------------------------------------- 106 (233)
T 1ii5_A 66 LDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTATP--------------------------------------- 106 (233)
T ss_dssp CSEEEEEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGTT---------------------------------------
T ss_pred cCEEEeeeecCccccccceeEEccceeecCeEEEEECCCCC---------------------------------------
Confidence 999998889999998 999999999999999999976321
Q ss_pred CCCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCC
Q 003054 502 DFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGD 581 (852)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~ 581 (852)
.+++++||. |+
T Consensus 107 -------------------------------------------------------------------~i~~~~dL~--g~ 117 (233)
T 1ii5_A 107 -------------------------------------------------------------------LFRSVGDLK--NK 117 (233)
T ss_dssp -------------------------------------------------------------------TCSSGGGGT--TC
T ss_pred -------------------------------------------------------------------CCCCHHHhC--CC
Confidence 288999996 89
Q ss_pred eEEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcC-CceEeecccccccce
Q 003054 582 NVGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYC-SKYAMIEPKFKTAGF 660 (852)
Q Consensus 582 ~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 660 (852)
+||+..|+....++++. ..+++.+.+.++++++|.+|+ ++|++.+...+.+++++.. ..+.+++..+....+
T Consensus 118 ~v~~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (233)
T 1ii5_A 118 EVAVVRDTTAVDWANFY---QADVRETNNLTAAITLLQKKQ----VEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPY 190 (233)
T ss_dssp EEEEETTSHHHHHHHHT---TCEEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEE
T ss_pred eEEEECCccHHHHHHHc---CCCeEEcCCHHHHHHHHHcCC----ccEEEeCHHHHHHHHHhCCCCcEEEeCccccccce
Confidence 99999999999988875 336788899999999999999 9999999999998887763 257777777777889
Q ss_pred EEEecCCCCchhhHHHHHHhccccChhHHHHHHHccC
Q 003054 661 GFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKK 697 (852)
Q Consensus 661 ~~~~~k~spl~~~in~~il~l~e~G~~~~i~~kw~~~ 697 (852)
+++++|++|+.+.+|++|..|.++|.+++|.+||+..
T Consensus 191 ~~~~~k~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~ 227 (233)
T 1ii5_A 191 GFVLKENSPLQKTINVEMLNLLYSRVIAEFTERWLGP 227 (233)
T ss_dssp EEEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHC-
T ss_pred EEEEcCCchHHHHHHHHHHHHHhCCcHHHHHHHHcCC
Confidence 9999999999999999999999999999999999963
No 54
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.85 E-value=1.5e-20 Score=193.06 Aligned_cols=221 Identities=15% Similarity=0.262 Sum_probs=192.4
Q ss_pred CCceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcC
Q 003054 343 NEKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLG 422 (852)
Q Consensus 343 ~~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g 422 (852)
..++|+||+. +.|+||.+.+ .++ ...|+++|+++++++++|++++++ .. +|.+++.+|.+|
T Consensus 9 ~~~~l~v~~~--~~~~P~~~~~-----~~g-~~~G~~~dl~~~i~~~~g~~~~~~--~~---------~~~~~~~~l~~g 69 (234)
T 3h7m_A 9 RHRTIVVGGD--RDYPPYEFID-----QNG-KPAGYNVELTRAIAEVMGMTVEFR--LG---------AWSEMFSALKSG 69 (234)
T ss_dssp SSSCEEEEEE--TEETTTEEEC-----TTS-CEESHHHHHHHHHHHHHTCCEEEE--EE---------CGGGHHHHHHTT
T ss_pred CCCEEEEEec--CCCCCeEEEC-----CCC-CEeeeEHHHHHHHHHHcCCceEEE--eC---------CHHHHHHHHhCC
Confidence 4678999995 6788898876 567 899999999999999999765554 32 489999999999
Q ss_pred cccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCCC
Q 003054 423 EFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNED 502 (852)
Q Consensus 423 ~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~ 502 (852)
++|++ .++..+++|.+.+.||.||.....++++++... .
T Consensus 70 ~~D~~-~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~-~--------------------------------------- 108 (234)
T 3h7m_A 70 RVDVL-QGISWSEKRARQIDFTPPHTIVYHAIFARRDSP-P--------------------------------------- 108 (234)
T ss_dssp SSSEE-EEEECCHHHHTTEEEEEEEEEEEEEEEEESSSC-C---------------------------------------
T ss_pred CeeEE-EeccCCHhHHhhcCCCccccccceEEEEECCCC-C---------------------------------------
Confidence 99995 678999999999999999999999999997642 1
Q ss_pred CCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCCe
Q 003054 503 FRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDN 582 (852)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~ 582 (852)
+++++||. |++
T Consensus 109 -------------------------------------------------------------------~~~~~dL~--g~~ 119 (234)
T 3h7m_A 109 -------------------------------------------------------------------AAGLEDLR--GRK 119 (234)
T ss_dssp -------------------------------------------------------------------CSSGGGGT--TSC
T ss_pred -------------------------------------------------------------------CCCHHHhC--CCE
Confidence 78999996 889
Q ss_pred EEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhc-CCceEeecccccccceE
Q 003054 583 VGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQY-CSKYAMIEPKFKTAGFG 661 (852)
Q Consensus 583 vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 661 (852)
||+..|+....++++. .+..+++.+++.++++++|.+|+ +||++.+...+.+++++. ...+.+++..+...+++
T Consensus 120 i~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (234)
T 3h7m_A 120 VALHRDGIMHEYLAER-GYGKDLVLTPTPADALRLLAAGG----CDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYG 194 (234)
T ss_dssp EEEETTSHHHHHHHTT-TCGGGEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEE
T ss_pred EEEEeCchHHHHHHhc-CCCceEEEeCCHHHHHHHHHcCC----ceEEEeccHHHHHHHHhcCCCceEEeccccCCCceE
Confidence 9999999999999876 34567889999999999999999 999999999998888765 33577777777888999
Q ss_pred EEecCCCC-chhhHHHHHHhccccChhHHHHHHHccC
Q 003054 662 FVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKK 697 (852)
Q Consensus 662 ~~~~k~sp-l~~~in~~il~l~e~G~~~~i~~kw~~~ 697 (852)
++++|++| +++.||++|.+|.++|.+++|.+||++.
T Consensus 195 ~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 231 (234)
T 3h7m_A 195 YAVRQGDAELLARFSEGLAILRKTGQYEAIRAKWLGV 231 (234)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTHHHHHHHHSTTC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCcHHHHHHHhccc
Confidence 99999988 9999999999999999999999999964
No 55
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.85 E-value=2e-20 Score=196.09 Aligned_cols=222 Identities=18% Similarity=0.289 Sum_probs=190.4
Q ss_pred CCceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcC
Q 003054 343 NEKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLG 422 (852)
Q Consensus 343 ~~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g 422 (852)
..+.|+||+. +.|+||.+.+ .++ ++.|+++|+++++++++|++ +++++. +|.+++.+|.+|
T Consensus 27 ~~~~l~v~~~--~~~~P~~~~~-----~~g-~~~G~~~dl~~~i~~~~g~~--~~~~~~---------~~~~~~~~l~~g 87 (259)
T 4dz1_A 27 EGRTLNVAVS--PASPPMLFKS-----ADG-KLQGIDLELFSSYCQSRHCK--LNITEY---------AWDGMLGAVASG 87 (259)
T ss_dssp TTCEEEEEEC--CCBTTTBEEC-----TTC-CEESHHHHHHHHHHHHHTCE--EEEEEC---------CHHHHHHHHHHT
T ss_pred cCCeEEEEEC--CCCCCeEEEC-----CCC-CEEEeHHHHHHHHHHHhCCe--EEEEEc---------CHHHHHHHHhCC
Confidence 3578999997 6788888776 467 89999999999999999974 555553 499999999999
Q ss_pred cccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCCC
Q 003054 423 EFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNED 502 (852)
Q Consensus 423 ~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~ 502 (852)
++|+++++++.+++|.+.++||.||...+.+++++++...
T Consensus 88 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~---------------------------------------- 127 (259)
T 4dz1_A 88 QADVAFSGISITDKRKKVIDFSEPYYINSFYLVSMANHKI---------------------------------------- 127 (259)
T ss_dssp SSSEEEEEEECCHHHHTTEEECCCSEEEEEEEEEETTSCC----------------------------------------
T ss_pred CCCEEEECCcCCHHHhhccccccchhhCceEEEEEcCCCC----------------------------------------
Confidence 9999999999999999999999999999999999876432
Q ss_pred CCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCCe
Q 003054 503 FRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDN 582 (852)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~ 582 (852)
.|++++||. |++
T Consensus 128 ------------------------------------------------------------------~i~~~~dL~--g~~ 139 (259)
T 4dz1_A 128 ------------------------------------------------------------------TLNNLNELN--KYS 139 (259)
T ss_dssp ------------------------------------------------------------------CCCSGGGGG--GSC
T ss_pred ------------------------------------------------------------------CCCCHHHhC--CCE
Confidence 288999997 889
Q ss_pred EEEEeCchHHHHHHhcCCCC------cceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCCceEeeccccc
Q 003054 583 VGYQKGSFVLGILKQLGFDE------RKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCSKYAMIEPKFK 656 (852)
Q Consensus 583 vg~~~~s~~~~~l~~~~~~~------~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~ 656 (852)
||+..|+....++++. .+. .+++.+++.++++++|.+|+ +||++.+...+.+++++....+........
T Consensus 140 v~v~~g~~~~~~l~~~-~~~~g~~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (259)
T 4dz1_A 140 IGYPRGMAYSDLIKND-LEPKGYYSLSKVKLYPTYNETMADLKNGN----LDLAFIEEPVYFTFKNKKKMPIESRYVFKN 214 (259)
T ss_dssp EEEETTSTHHHHHHHH-TGGGTSCCGGGCEEESSHHHHHHHHHHTS----CSEEEEEHHHHHHHHHTSCCCEEEEEEEEE
T ss_pred EEEeCCcHHHHHHHHh-cccccccccceeEecCCHHHHHHHHHcCC----CCEEEecHHHHHHHhccCCCceEeecccCC
Confidence 9999999998888764 222 57888999999999999999 999999998888877765434666666666
Q ss_pred ccceEEEecCCCCchhhHHHHHHhccccChhHHHHHHHccC
Q 003054 657 TAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKK 697 (852)
Q Consensus 657 ~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~i~~kw~~~ 697 (852)
..+++++++|+++|++.||++|.+ ..++.+++++++|.+.
T Consensus 215 ~~~~~~~~~k~~~l~~~ln~~l~~-~g~~~l~~~~~~~~~~ 254 (259)
T 4dz1_A 215 VDQLGIAFKKGSPVRDDFNLWLKE-QGPQKISGIVDSWMKH 254 (259)
T ss_dssp EEEEEEEEETTCHHHHHHHHHHHH-HCHHHHHHHHHHHTCC
T ss_pred CceEEEEEeCChHHHHHHHHHHHh-CCCeehHHHHHHHHhh
Confidence 788999999999999999999999 8888999999999963
No 56
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.85 E-value=2.7e-20 Score=189.96 Aligned_cols=221 Identities=21% Similarity=0.352 Sum_probs=189.1
Q ss_pred CceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCc
Q 003054 344 EKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGE 423 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~ 423 (852)
.++|+||+. ++|+||.+.+ + + +..|+++|+++++++++|++++++ .. +|.+++.+|.+|+
T Consensus 2 ~~~l~v~~~--~~~~P~~~~~-----~-g-~~~G~~~dl~~~~~~~~g~~~~~~--~~---------~~~~~~~~l~~g~ 61 (226)
T 1wdn_A 2 DKKLVVATD--TAFVPFEFKQ-----G-D-LYVGFDVDLWAAIAKELKLDYELK--PM---------DFSGIIPALQTKN 61 (226)
T ss_dssp --CEEEEEE--SSBTTTBEEE-----T-T-EEESHHHHHHHHHHHHHTCCEEEE--EE---------CGGGHHHHHHTTS
T ss_pred CceEEEEEC--CCCCCeeEec-----C-C-cEEEeeHHHHHHHHHHhCCEEEEE--EC---------CHHHHHHHHhCCC
Confidence 357999997 6788888775 3 6 899999999999999999755544 32 4899999999999
Q ss_pred ccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCCCC
Q 003054 424 FDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNEDF 503 (852)
Q Consensus 424 ~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~~ 503 (852)
+|++++++..+++|.+.+.|+.||.....++++++...
T Consensus 62 ~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~------------------------------------------ 99 (226)
T 1wdn_A 62 VDLALAGITITDERKKAIDFSDGYYKSGLLVMVKANNN------------------------------------------ 99 (226)
T ss_dssp SSEEEEEEECCHHHHTTSEECSCCEEEEEEEEEETTCC------------------------------------------
T ss_pred CCEEEEcCcCCHHHhCccccccchhcCceEEEEeCCCC------------------------------------------
Confidence 99998888889999999999999999999999986631
Q ss_pred CCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCCeE
Q 003054 504 RGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNV 583 (852)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~v 583 (852)
.+++++||. |++|
T Consensus 100 -----------------------------------------------------------------~i~~~~dL~--g~~i 112 (226)
T 1wdn_A 100 -----------------------------------------------------------------DVKSVKDLD--GKVV 112 (226)
T ss_dssp -----------------------------------------------------------------SCSSSTTTT--TCEE
T ss_pred -----------------------------------------------------------------CCCCHHHhC--CCEE
Confidence 178899996 8999
Q ss_pred EEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcC-CceEeecccccccceEE
Q 003054 584 GYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYC-SKYAMIEPKFKTAGFGF 662 (852)
Q Consensus 584 g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ 662 (852)
|+..|+....++++. ++..+++.+.+.++.+++|.+|+ +++++.+...+.+++++.. ..+.+++..+....+++
T Consensus 113 ~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 187 (226)
T 1wdn_A 113 AVKSGTGSVDYAKAN-IKTKDLRQFPNIDNAYMELGTNR----ADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGI 187 (226)
T ss_dssp EEETTSHHHHHHHHH-CCCSEEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEE
T ss_pred EEEcCCcHHHHHHHh-CCCceEEEeCCHHHHHHHHHcCC----cCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEE
Confidence 999999999888875 34557888999999999999999 9999999988888887763 35777776677778999
Q ss_pred EecCCCC-chhhHHHHHHhccccChhHHHHHHHccCC
Q 003054 663 VFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKKH 698 (852)
Q Consensus 663 ~~~k~sp-l~~~in~~il~l~e~G~~~~i~~kw~~~~ 698 (852)
+++|++| +.+.+|++|..+.++|.+++|.+||+...
T Consensus 188 ~~~k~~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~~ 224 (226)
T 1wdn_A 188 AFPKGSDELRDKVNGALKTLRENGTYNEIYKKWFGTE 224 (226)
T ss_dssp EECTTCHHHHHHHHHHHHHHHHTSHHHHHHHHHHSSC
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCC
Confidence 9999985 99999999999999999999999999643
No 57
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.84 E-value=2.4e-20 Score=196.38 Aligned_cols=220 Identities=15% Similarity=0.290 Sum_probs=189.2
Q ss_pred CceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCc
Q 003054 344 EKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGE 423 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~ 423 (852)
.+.|+||+. +.|+||.+.+ .++ ++.|+++|+++++++++|+ ++++++.. +|.+++.+|.+|+
T Consensus 31 ~~~l~v~~~--~~~~P~~~~~-----~~g-~~~G~~~dl~~~i~~~lg~--~~~~~~~~--------~~~~~~~~l~~G~ 92 (267)
T 3mpk_A 31 HPVVKVAVL--NLFAPFTLFR-----TDE-QFGGISAAVLQLLQLRTGL--DFEIIGVD--------TVEELIAKLRSGE 92 (267)
T ss_dssp CSEEEEEEE--TEETTTEECC-----TTC-CCBSHHHHHHHHHHHHHCC--EEEEEEES--------SHHHHHHHHHHTS
T ss_pred CCcEEEEeC--CCCCCeEEEC-----CCC-cEeeeHHHHHHHHHHHHCC--eEEEEecC--------CHHHHHHHHHCCC
Confidence 678999996 6688998875 467 8999999999999999996 55555543 6999999999999
Q ss_pred ccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCCCC
Q 003054 424 FDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNEDF 503 (852)
Q Consensus 424 ~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~~ 503 (852)
+|++. +++.+++|.+.+.||.||...+.++++++...
T Consensus 93 ~D~~~-~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~------------------------------------------ 129 (267)
T 3mpk_A 93 ADMAG-ALFVNSARESFLSFSRPYVRNGMVIVTRQDPD------------------------------------------ 129 (267)
T ss_dssp CSEEE-EEECCGGGTTTEEECSCSEEECEEEEEESSTT------------------------------------------
T ss_pred ccEEe-cccCChhhhcceEechhhccCceEEEEECCCC------------------------------------------
Confidence 99975 79999999999999999999999999997632
Q ss_pred CCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCCeE
Q 003054 504 RGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNV 583 (852)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~v 583 (852)
.+++++||. |++|
T Consensus 130 -----------------------------------------------------------------~i~~~~dL~--g~~i 142 (267)
T 3mpk_A 130 -----------------------------------------------------------------APVDADHLD--GRTV 142 (267)
T ss_dssp -----------------------------------------------------------------SCSSGGGCT--TCEE
T ss_pred -----------------------------------------------------------------CCCCHHHHC--CCEE
Confidence 178999996 8999
Q ss_pred EEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhc-CCceEeecccc-cccceE
Q 003054 584 GYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQY-CSKYAMIEPKF-KTAGFG 661 (852)
Q Consensus 584 g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~-~~~~~~v~~~~-~~~~~~ 661 (852)
|+..|+....++++. ++..+++.+++.++++++|.+|+ +||++.+...+.+++++. ...+.+++... ...+++
T Consensus 143 ~v~~g~~~~~~l~~~-~~~~~~~~~~~~~~~l~~L~~Gr----vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 217 (267)
T 3mpk_A 143 ALVRNSAAIPLLQRR-YPQAKVVTADNPSEAMLMVANGQ----ADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIA 217 (267)
T ss_dssp EEETTCTHHHHHHHH-CTTSEEEEESSHHHHHHHHHHTS----CSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEE
T ss_pred EEeCCchhHHHHHHh-CCCcEEEEeCCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEE
Confidence 999999999998875 55678899999999999999999 999999999999988874 33466665533 467899
Q ss_pred EEecCCCC-chhhHHHHHHhccccChhHHHHHHHccC
Q 003054 662 FVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKK 697 (852)
Q Consensus 662 ~~~~k~sp-l~~~in~~il~l~e~G~~~~i~~kw~~~ 697 (852)
++++|++| ++..||++|..|.++| +++|.+||++.
T Consensus 218 ~~~~k~~~~l~~~ln~~l~~l~~~~-~~~i~~kw~~~ 253 (267)
T 3mpk_A 218 LATTRGQTELMSILNKALYSISNDE-LASIISRWRGS 253 (267)
T ss_dssp EEEETTCHHHHHHHHHHHHTSCHHH-HHHHHHTTC--
T ss_pred EEEcCCCHHHHHHHHHHHHhCCHHH-HHHHHHhhccC
Confidence 99999988 9999999999999996 99999999964
No 58
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.84 E-value=6.1e-20 Score=187.91 Aligned_cols=218 Identities=19% Similarity=0.385 Sum_probs=188.1
Q ss_pred CCceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcC
Q 003054 343 NEKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLG 422 (852)
Q Consensus 343 ~~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g 422 (852)
..++|+||+. +.|+||.+.+ .++ +..|+++|+++++++++|++ ++++.. +|.+++.+|.+|
T Consensus 4 ~a~~l~v~~~--~~~~P~~~~~-----~~g-~~~G~~~dl~~~i~~~~g~~--~~~~~~---------~~~~~~~~l~~g 64 (229)
T 2y7i_A 4 SARTLHFGTS--ATYAPYEFVD-----ADN-KIVGFDIDVANAVCKEMQAE--CSFTNQ---------SFDSLIPSLRFK 64 (229)
T ss_dssp SCCEEEEEEC--CCBTTTBEEC-----TTS-CEESHHHHHHHHHHHHTTCE--EEEEEC---------CGGGHHHHHHTT
T ss_pred cCCcEEEEeC--CCcCCceEEC-----CCC-CCcceeHHHHHHHHHHhCCe--EEEEEc---------CHHHHHHHHhCC
Confidence 3678999996 6788888765 467 89999999999999999975 455443 489999999999
Q ss_pred cccEEEeeeeeecCcceeeecccccccc-ceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCC
Q 003054 423 EFDAVVGDITIVFNRSNYVDFTLPYTES-GVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNE 501 (852)
Q Consensus 423 ~~D~~~g~~~it~~r~~~vdft~p~~~~-~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~ 501 (852)
++|++++++..+++|.+.+.|+.||... ..++++++..
T Consensus 65 ~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~----------------------------------------- 103 (229)
T 2y7i_A 65 KFDAVIAGMDMTPKREQQVSFSQPYYEGLSAVVVTRKGA----------------------------------------- 103 (229)
T ss_dssp SCSEECSSCBCCHHHHTTSEECSCSBCCCCEEEEEETTS-----------------------------------------
T ss_pred CceEEEecCccCHHHhcceeeccccccCCcEEEEEeCCC-----------------------------------------
Confidence 9999987788999999999999999999 9999998652
Q ss_pred CCCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCC
Q 003054 502 DFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGD 581 (852)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~ 581 (852)
+++++||. |+
T Consensus 104 --------------------------------------------------------------------~~~~~dL~--g~ 113 (229)
T 2y7i_A 104 --------------------------------------------------------------------YHTFADLK--GK 113 (229)
T ss_dssp --------------------------------------------------------------------CCSTGGGT--TC
T ss_pred --------------------------------------------------------------------CCCHHHHC--CC
Confidence 56789996 89
Q ss_pred eEEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCCceEeeccccc-----
Q 003054 582 NVGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCSKYAMIEPKFK----- 656 (852)
Q Consensus 582 ~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~----- 656 (852)
+||+..|+....++++. ++..+++.+.+.++++++|.+|+ +++++.+...+.+++++.. .+.+++..+.
T Consensus 114 ~v~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~gr----vDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 187 (229)
T 2y7i_A 114 KVGLENGTTHQRYLQDK-QQAITPVAYDSYLNAFTDLKNNR----LEGVFGDVAAIGKWLKNNP-DYAIMDERASDPDYY 187 (229)
T ss_dssp EEEEETTSHHHHHHHHH-CTTSEEEEESCHHHHHHHHHTTS----CSEEEEEHHHHHHHHTTCT-TEEECSCCBCCTTTS
T ss_pred EEEEecCCcHHHHHHHh-CCCCeEEecCCHHHHHHHHHcCC----cCEEEechHHHHHHHHhCC-CeEEecccccccccc
Confidence 99999999998888865 44567888999999999999999 9999999999999988876 5777765542
Q ss_pred ccceEEEecCCCC-chhhHHHHHHhccccChhHHHHHHHcc
Q 003054 657 TAGFGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFK 696 (852)
Q Consensus 657 ~~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~i~~kw~~ 696 (852)
...++++++|++| ++..||++|.++.++|.+++|.+||++
T Consensus 188 ~~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 228 (229)
T 2y7i_A 188 GKGLGIAVRKDNDALLQEINAALDKVKASPEYAQMQEKWFT 228 (229)
T ss_dssp CCCBCCEECTTCHHHHHHHHHHHHHHHTSHHHHHHHHHHHC
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 2478999999988 999999999999999999999999985
No 59
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.83 E-value=1.5e-20 Score=198.48 Aligned_cols=222 Identities=18% Similarity=0.280 Sum_probs=184.1
Q ss_pred CCceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcC
Q 003054 343 NEKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLG 422 (852)
Q Consensus 343 ~~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g 422 (852)
..++|+||+. +.|+||.+.+.+ ++.+ +..|+++|+++++++++|++ ++++.. +|.+++.+|.+|
T Consensus 19 ~~~~l~v~~~--~~~pP~~~~~~~--~~~g-~~~G~~~dl~~~i~~~~g~~--v~~~~~---------~~~~~~~~l~~G 82 (271)
T 2iee_A 19 DKGKIVVATS--GTLYPTSYHDTD--SGSD-KLTGYEVEVVREAAKRLGLK--VEFKEM---------GIDGMLTAVNSG 82 (271)
T ss_dssp HHTEEEEEEC--SCBTTTBEEETT--TTCC-EEECHHHHHHHHHHHHTTCE--EEEEEC---------CSTTHHHHHHHT
T ss_pred cCCeEEEEEC--CCCCCeeEeCCC--CCCC-CceeeHHHHHHHHHHHcCCe--EEEEEC---------CHHHHHHHHHCC
Confidence 4678999997 678889887621 1227 99999999999999999975 455443 388999999999
Q ss_pred cccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCCC
Q 003054 423 EFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNED 502 (852)
Q Consensus 423 ~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~ 502 (852)
++|+++++++.+++|.+.++||.||...+.++++++....
T Consensus 83 ~~D~~~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~---------------------------------------- 122 (271)
T 2iee_A 83 QVDAAANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLS---------------------------------------- 122 (271)
T ss_dssp SSSEECSSCBCCHHHHTTEEECCCSEEEEEEEEECTTTGG----------------------------------------
T ss_pred CcCEEEeCCcCChhhccceEEeecceeCCeEEEEECCCCC----------------------------------------
Confidence 9999988888999999999999999999999999866321
Q ss_pred CCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCCe
Q 003054 503 FRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDN 582 (852)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~ 582 (852)
.|++++||. |++
T Consensus 123 ------------------------------------------------------------------~i~~~~dL~--g~~ 134 (271)
T 2iee_A 123 ------------------------------------------------------------------GIKTLKDLK--GKK 134 (271)
T ss_dssp ------------------------------------------------------------------GCSSGGGGT--TCE
T ss_pred ------------------------------------------------------------------CCCCHHHhC--CCE
Confidence 178999996 899
Q ss_pred EEEEeCchHHHHHHhcCCCCcceeecCCHhHH--HHHhhcccccCceeEEEechhHHHHHHh-hcC-CceEee-cccccc
Q 003054 583 VGYQKGSFVLGILKQLGFDERKLVVYNSPEDC--HELFQKGSVNGGIAAAFDEIPYMKLLIG-QYC-SKYAMI-EPKFKT 657 (852)
Q Consensus 583 vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~--~~~l~~g~~~~g~~a~~~~~~~~~~~~~-~~~-~~~~~v-~~~~~~ 657 (852)
||+..|+....+|++.+. +++.+++.++. +++|.+|+ ++ ++.+...+.+++. +.. ..+.++ +..+..
T Consensus 135 i~v~~g~~~~~~l~~~~~---~~~~~~~~~~~~l~~~L~~Gr----vD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (271)
T 2iee_A 135 AAGAATTVYMEVARKYGA---KEVIYDNATNEQYLKDVANGR----TD-VILNDYYLQTLALAAFPDLNITIHPDIKYMP 206 (271)
T ss_dssp EESCTTSHHHHHHHHTTC---EEEECSSCCHHHHHHHHHHTS----SC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEE
T ss_pred EEEeCCccHHHHHHHcCC---ceEEeCChhhHHHHHHHHcCC----cc-EEeccHHHHHHHHHhCCCCceEEecCCCccc
Confidence 999999999999987643 78888998888 99999999 99 5555555555554 442 357776 667777
Q ss_pred cceEEEecCCCC-chhhHHHHHHhccccChhHHHHHHHcc
Q 003054 658 AGFGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFK 696 (852)
Q Consensus 658 ~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~i~~kw~~ 696 (852)
.+++++++|++| ++..||++|..|.++|.+++|.+||+.
T Consensus 207 ~~~~~~~~k~~~~l~~~ln~al~~l~~~G~~~~i~~k~~~ 246 (271)
T 2iee_A 207 NKQALVMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFN 246 (271)
T ss_dssp EEECCEEETTCHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred ceEEEEEcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHhCC
Confidence 889999999988 999999999999999999999999997
No 60
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.83 E-value=5.1e-20 Score=190.76 Aligned_cols=222 Identities=13% Similarity=0.185 Sum_probs=185.6
Q ss_pred CCceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCC-CccceEEEecCCCCCCCCCChhHHHHHHhc
Q 003054 343 NEKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELP-YAVAYDFVPYGQPDGSSSGSYNDLVYQVFL 421 (852)
Q Consensus 343 ~~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~-~~~~~~~~~~~~~~g~~ngs~~~li~~l~~ 421 (852)
..++|+||+. +.|+||.+ . .++ +..|+++|+++++++++| ++ +++++. +|.+++.+|.+
T Consensus 6 ~~~~l~v~~~--~~~~P~~~-~-----~~g-~~~G~~~dl~~~i~~~~g~~~--~~~~~~---------~~~~~~~~l~~ 65 (246)
T 4eq9_A 6 SKKEIIVATN--GSPRPFIY-E-----ENG-ELTGYEIEVVRAIFKDSDKYD--VKFEKT---------EWSGVFAGLDA 65 (246)
T ss_dssp -CEEEEEEEC--CCSTTTSE-E-----ETT-EEESHHHHHHHHHHTTCSSEE--EEEEEC---------CHHHHHHHHHT
T ss_pred CCCEEEEEeC--CCcCCeEE-c-----CCC-CCcccHHHHHHHHHHHcCCce--EEEEeC---------CHHHHHHHHhC
Confidence 3578999997 57788887 3 366 899999999999999999 75 444443 49999999999
Q ss_pred CcccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCC
Q 003054 422 GEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNE 501 (852)
Q Consensus 422 g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~ 501 (852)
|++|+++++++.+++|.+.+.||.||...+.++++++...
T Consensus 66 g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~---------------------------------------- 105 (246)
T 4eq9_A 66 DRYNMAVNNLSYTKERAEKYLYAAPIAQNPNVLVVKKDDS---------------------------------------- 105 (246)
T ss_dssp TSCSEECSSCCCCHHHHHHEEECCCCEECCEEEEEETTCC----------------------------------------
T ss_pred CCcCEEecccccChhhhhceeeccceecCceEEEEECCCC----------------------------------------
Confidence 9999999889999999999999999999999999997322
Q ss_pred CCCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCC
Q 003054 502 DFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGD 581 (852)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~ 581 (852)
+|++++||. |+
T Consensus 106 -------------------------------------------------------------------~i~~~~dL~--g~ 116 (246)
T 4eq9_A 106 -------------------------------------------------------------------SIKSLDDIG--GK 116 (246)
T ss_dssp -------------------------------------------------------------------SCSSGGGCT--TC
T ss_pred -------------------------------------------------------------------CCCCHHHhC--CC
Confidence 288999997 99
Q ss_pred eEEEEeCchHHHHHHhc--CCCC--ccee-ecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcC-CceEeecccc
Q 003054 582 NVGYQKGSFVLGILKQL--GFDE--RKLV-VYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYC-SKYAMIEPKF 655 (852)
Q Consensus 582 ~vg~~~~s~~~~~l~~~--~~~~--~~~~-~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~-~~~~~v~~~~ 655 (852)
+||+..|+....++.+. ..+. ..+. ...+.++++++|.+|+ ++|++.+...+.+++++.. ..+.++....
T Consensus 117 ~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~----vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (246)
T 4eq9_A 117 STEVVQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQ----FDYKIFDKIGVETVIKNQGLDNLKVIELPS 192 (246)
T ss_dssp EEEECTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHHTCTTEEEEECCC
T ss_pred EEEEecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCC----ceEEEecHHHHHHHHHhCCCCCceEecCcC
Confidence 99999999888887661 1332 2333 2358899999999999 9999999999999988764 3577777666
Q ss_pred cccc-eEEEecCCCC-chhhHHHHHHhccccChhHHHHHHHccC
Q 003054 656 KTAG-FGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKK 697 (852)
Q Consensus 656 ~~~~-~~~~~~k~sp-l~~~in~~il~l~e~G~~~~i~~kw~~~ 697 (852)
.... ++++++|++| +++.||++|.++.++|.+++|.++|++.
T Consensus 193 ~~~~~~~~~~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~ 236 (246)
T 4eq9_A 193 DQQPYVYPLLAQGQDELKSFVDKRIKELYKDGTLEKLSKQFFGD 236 (246)
T ss_dssp SSCCEECCEEETTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred CCCCcEEEEEcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHhcCC
Confidence 6555 8999999987 9999999999999999999999999963
No 61
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.83 E-value=2.4e-20 Score=201.03 Aligned_cols=240 Identities=12% Similarity=0.078 Sum_probs=184.8
Q ss_pred hhhHHHHhc-CCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHH
Q 003054 2 QTNFIIQLG-NKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTD 80 (852)
Q Consensus 2 ~a~~v~~i~-~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~ 80 (852)
.+.++++++ ++.+||+|++++++ .++...+.|+||+.| ..+++++++++.+.|.|++++|+.+++||++..+.|++
T Consensus 68 ~~~a~~~~~~~~~~vp~i~~~~~~-~~~~~~~~~~f~~~~--~~~~~~~a~~a~~~g~k~vail~~~~~yG~~~~~~F~~ 144 (325)
T 2h4a_A 68 NLDVILADPAQIQGMDVLALNATP-NSRAIPQLCYYGLSP--EDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNV 144 (325)
T ss_dssp HHHHHHHCGGGGTTCEEEESCCCS-SCCCCTTEEECCCCH--HHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHhhhhccCCCcEEECCCCc-cccCCCCeEEEECCH--HHHHHHHHHHHHHcCCCeEEEEEcCCcHHHHHHHHHHH
Confidence 356778888 77999999987754 333344567777654 45799999999888999999999999999999999999
Q ss_pred HHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCccccccccC
Q 003054 81 ALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTL 160 (852)
Q Consensus 81 ~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~~ 160 (852)
++++.|++|+..+.+.. + +||..+|+++ ..+||+|++.++..++..+.+++++.|...+ .+.++++.......
T Consensus 145 ~~~~~Gg~vv~~~~y~~--~-~d~~~~l~~i-~~~pDaV~~~~~~~~~~~i~~~~~~~g~~~p---l~~~~~~~~~s~~~ 217 (325)
T 2h4a_A 145 RWQQLAGTDANIRYYNL--P-ADVTYFVQEN-NSNTTALYAVASPTELAEXKGYLTNIVPNLA---IYASSRASASATNT 217 (325)
T ss_dssp HHHHHHSSCCEEEEESS--T-THHHHHHHHS-TTCCCEEEECCCHHHHHHHHHHHTTTCTTCE---EEECGGGCCHHHHT
T ss_pred HHHHcCCCcceeEecCC--H-HHHHHHHHhc-CCCCCEEEEeCCHHHHhhhhhhHhhcCCCCC---EEEeccccccCCCC
Confidence 99999999999988874 3 6999999999 4899999999999999999999998887666 77777776211112
Q ss_pred CchhhcccceEEEEE-ecCC--CChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccCcCccc
Q 003054 161 EPSVIDSMQGVIGVG-PHVP--KTKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDK 237 (852)
Q Consensus 161 ~~~~~~~~~gv~~~~-~~~~--~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~~~ 237 (852)
.......++|++... ++.. +.+..++|.++|++.+ .|..+.+.+|||+.+++++. +..
T Consensus 218 ~~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~----------~~~rl~AlgyDA~~l~~~l~-~l~-------- 278 (325)
T 2h4a_A 218 NTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY----------QLMRLYAMGADAWLLINQFN-ELR-------- 278 (325)
T ss_dssp CHHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH----------HHHHHHHHHHHHHHHHHTHH-HHH--------
T ss_pred CchhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc----------chHHHHHHHHHHHHHHHHHH-HHh--------
Confidence 233456789987665 5543 4577888888775543 35667799999999866642 211
Q ss_pred cccCCCCCCCccccccCChHHHHHHhhccceeeeeeeEEee-cCccccceEEEEEccCC
Q 003054 238 TNVSRNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVNNG 295 (852)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~g~~l~~al~~~~f~GltG~v~f~-~G~~~~~~~~I~~~~~g 295 (852)
.+.+..|+|++|.++|+ +|+. .-...+.++++|
T Consensus 279 ------------------------~~~~~~~~G~tG~l~~~~~g~~-~R~l~~~~~~~G 312 (325)
T 2h4a_A 279 ------------------------QVPGYRLSGLTGILSADTNCNV-ERDMTWYQYQDG 312 (325)
T ss_dssp ------------------------HSTTCCEEETTEEEEECTTCBE-EEECEEEEEETT
T ss_pred ------------------------hCCCCeeccCceeEEECCCCeE-EEeechhhccCC
Confidence 13345799999999998 8887 455677788766
No 62
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.83 E-value=5.3e-20 Score=189.83 Aligned_cols=222 Identities=16% Similarity=0.259 Sum_probs=183.8
Q ss_pred CceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCc
Q 003054 344 EKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGE 423 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~ 423 (852)
.++|+||+. +.|+||.+.+ .++ +..|+++|+++++++++|++ ++++.. +|.+++.+|.+|+
T Consensus 3 ~~~l~v~~~--~~~~P~~~~~-----~~g-~~~G~~~dl~~~i~~~~g~~--~~~~~~---------~~~~~~~~l~~g~ 63 (239)
T 1lst_A 3 PQTVRIGTD--TTYAPFSSKD-----AKG-EFIGFDIDLGNEMCKRMQVK--CTWVAS---------DFDALIPSLKAKK 63 (239)
T ss_dssp CSEEEEEEC--SCBTTTBEEC-----TTC-CEESHHHHHHHHHHHHHTCE--EEEEEC---------CGGGHHHHHHTTS
T ss_pred cceEEEEEC--CCcCCeeEEC-----CCC-CEeeEHHHHHHHHHHHHCCe--EEEEeC---------CHHHHHHHHhCCC
Confidence 568999995 6788888775 467 89999999999999999975 455443 4999999999999
Q ss_pred ccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCCCC
Q 003054 424 FDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNEDF 503 (852)
Q Consensus 424 ~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~~ 503 (852)
+|+++++++.+++|.+.++||.||...+.++++++....
T Consensus 64 ~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~~~----------------------------------------- 102 (239)
T 1lst_A 64 IDAIISSLSITDKRQQEIAFSDKLYAADSRLIAAKGSPI----------------------------------------- 102 (239)
T ss_dssp CSEECSSCBCCHHHHHHCEECSCSBCCCEEEEEETTCCC-----------------------------------------
T ss_pred CCEEEECcCcCHHHhhceeecccceeCceEEEEeCCCCC-----------------------------------------
Confidence 999988889999999999999999999999999976321
Q ss_pred CCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCCeE
Q 003054 504 RGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNV 583 (852)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~v 583 (852)
..+++||. |++|
T Consensus 103 ------------------------------------------------------------------~~~~~dL~--g~~v 114 (239)
T 1lst_A 103 ------------------------------------------------------------------QPTLESLK--GKHV 114 (239)
T ss_dssp ------------------------------------------------------------------CSSHHHHT--TCEE
T ss_pred ------------------------------------------------------------------CCCHHHhC--CCEE
Confidence 24899996 8999
Q ss_pred EEEeCchHHHHHHhcC-CCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHH-HHhhc-CCceEeecccccc---
Q 003054 584 GYQKGSFVLGILKQLG-FDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKL-LIGQY-CSKYAMIEPKFKT--- 657 (852)
Q Consensus 584 g~~~~s~~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~-~~~~~-~~~~~~v~~~~~~--- 657 (852)
|+..|+....++++.. .+..+++.+++.++.+++|.+|+ +++++.+...+.+ ++.+. ...+.+++..+..
T Consensus 115 ~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 190 (239)
T 1lst_A 115 GVLQGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGR----LDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKY 190 (239)
T ss_dssp EEETTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHH
T ss_pred EEEcCccHHHHHHHhcccCCCeEEEcCCHHHHHHHHHcCC----CCEEEeCcHHHHHHHHhccCCCceEEeccccccccc
Confidence 9999999888887642 12346788999999999999999 9999999877754 44443 2246666655443
Q ss_pred --cceEEEecCCCC-chhhHHHHHHhccccChhHHHHHHHccC
Q 003054 658 --AGFGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKK 697 (852)
Q Consensus 658 --~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~i~~kw~~~ 697 (852)
..++++++|++| +.+.+|++|..+.++|.+++|.+||+..
T Consensus 191 ~~~~~~~~~~k~~~~l~~~~~~~l~~l~~~G~~~~i~~k~~~~ 233 (239)
T 1lst_A 191 FGDGTGVGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDF 233 (239)
T ss_dssp HCSSBCCEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHTTCSS
T ss_pred cCcceEEEEeCCCHHHHHHHHHHHHHHHHCccHHHHHHHHcCC
Confidence 368999999988 9999999999999999999999999963
No 63
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.83 E-value=4.6e-20 Score=200.40 Aligned_cols=243 Identities=12% Similarity=0.051 Sum_probs=185.0
Q ss_pred hHHHH-hcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHH
Q 003054 4 NFIIQ-LGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDAL 82 (852)
Q Consensus 4 ~~v~~-i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l 82 (852)
.++++ +++...+|+++.++++ ..+ ..|++||+.+++..++.++++++...|+|++++|+.|++||++..+.|++++
T Consensus 72 ~a~~~~~~~~~~v~~~~~~~~~-~~~--~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f~~~~ 148 (327)
T 3ckm_A 72 DVILADPAQIQGMDVLALNATP-NSR--AIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRW 148 (327)
T ss_dssp HHHHHCGGGGTTCEEEESCCCT-TCC--CCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHH
T ss_pred hhhHHHHHhccCceEeccCcCc-ccc--cCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHHHHHHHHHHHHH
Confidence 44444 4555667776654443 333 3589999999999999999999988899999999999999999999999999
Q ss_pred HhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCccccccccCCc
Q 003054 83 QAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEP 162 (852)
Q Consensus 83 ~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~~~~~~~~~~~ 162 (852)
++.|++|+....++.. + ....+.+++..++|+|++.+++.++..+++|++++|+..+ ++.++++.........
T Consensus 149 ~~~Gg~vv~~~~~~~~--~--~~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~~~~---~~~~~~~~~~~~~~~~ 221 (327)
T 3ckm_A 149 QQLAGTDANIRYYNLP--A--DVTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPNLA---IYASSRASASATNTNT 221 (327)
T ss_dssp HHHHSSCCEEEEESST--T--HHHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTTCE---EEECGGGCCHHHHTCH
T ss_pred HHCCCeEEEEEECCCC--c--hhhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhccCC---EEeeeccccccchhcc
Confidence 9999999999888633 3 3456788899999999999999999999999999998776 7777766543322222
Q ss_pred hhhcccceEEEEE-ec--CCCChHHHHHHHHHHHhccccCCCCcccccchhhHhHhhHHHHHHHHHHHhcccCcCccccc
Q 003054 163 SVIDSMQGVIGVG-PH--VPKTKALENFRVRWKRNFLQENPSIVDVELNIFGLLAYDATRALAEAVEKAGITSFGFDKTN 239 (852)
Q Consensus 163 ~~~~~~~gv~~~~-~~--~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~aYDAv~~lA~Al~~a~~~~~~~~~~~ 239 (852)
.....++|++... ++ .++.+..+.|.++|+++|+. ..+.+++|||+.+++++.+.+.
T Consensus 222 ~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~----------~~~~AlgyDA~~l~~~l~~~~~---------- 281 (327)
T 3ckm_A 222 DFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEYQL----------MRLYAMGADAWLLINQFNELRQ---------- 281 (327)
T ss_dssp HHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCHHH----------HHHHHHHHHHHHHHHTHHHHHH----------
T ss_pred hhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhcCC----------CchHHHHHHHHHHHHHHHHhcC----------
Confidence 2234467766554 33 34578899999999888864 2367889999998776554332
Q ss_pred cCCCCCCCccccccCChHHHHHHhhccceeeeeeeEEee-cCccccceEEEEEccCC-cEEEE
Q 003054 240 VSRNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVNNG-ARGVG 300 (852)
Q Consensus 240 ~~~~~~~~~~~~~~~~g~~l~~al~~~~f~GltG~v~f~-~G~~~~~~~~I~~~~~g-~~~vG 300 (852)
+...+|+|++|.++|+ +|+. ...+.++++++| ++.|.
T Consensus 282 -----------------------~~~~~f~G~tG~i~fd~~G~~-~r~l~~~~~~~G~~vpv~ 320 (327)
T 3ckm_A 282 -----------------------VPGYRLSGLTGILSADTNCNV-ERDMTWYQYQDGAIVPVV 320 (327)
T ss_dssp -----------------------STTCCEEETTEEEEECTTCBE-EEECEEEEEETTEEEECC
T ss_pred -----------------------CCCCCceeceEEEEECCCCCC-ccccEEEEEECCEEEEcc
Confidence 2234699999999998 8986 455677888766 55553
No 64
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.82 E-value=8e-20 Score=190.90 Aligned_cols=223 Identities=14% Similarity=0.183 Sum_probs=187.8
Q ss_pred CceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCc
Q 003054 344 EKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGE 423 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~ 423 (852)
.++|+||+. +|+||.+.+ .++ +..|+++|+++++++++|++ .++++.. .|.+++.+|.+|+
T Consensus 12 ~~~l~v~~~---~~~P~~~~~-----~~g-~~~G~~~dl~~~i~~~~g~~-~~~~~~~---------~~~~~~~~l~~g~ 72 (257)
T 2q88_A 12 QGFARIAIA---NEPPFTAVG-----ADG-KVSGAAPDVAREIFKRLGVA-DVVASIS---------EYGAMIPGLQAGR 72 (257)
T ss_dssp HTEEEEEEC---CCTTTCEEC-----TTC-CEESHHHHHHHHHHHHTTCC-EEEEEEC---------CGGGHHHHHHTTS
T ss_pred CCeEEEEcC---CCCCeeEEC-----CCC-CcccccHHHHHHHHHHcCCC-eeeEEeC---------CHHHHHHHHHCCC
Confidence 578999985 577888765 467 89999999999999999975 1555443 4899999999999
Q ss_pred ccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCCCC
Q 003054 424 FDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNEDF 503 (852)
Q Consensus 424 ~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~~ 503 (852)
+|+++++++.+++|.+.++||.||...+.++++++....
T Consensus 73 ~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~----------------------------------------- 111 (257)
T 2q88_A 73 HDAITAGLFMKPERCAAVAYSQPILCDAEAFALKKGNPL----------------------------------------- 111 (257)
T ss_dssp CSEECSCCBCCHHHHTTSEECSCCCEECEEEEEETTCTT-----------------------------------------
T ss_pred cCEEEecccCCHHHHhccccccchhcCceEEEEECCCcc-----------------------------------------
Confidence 999987889999999999999999999999999976421
Q ss_pred CCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhc-CCe
Q 003054 504 RGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKR-GDN 582 (852)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~-~~~ 582 (852)
.+++++||..+ |++
T Consensus 112 -----------------------------------------------------------------~i~~~~dL~~~~g~~ 126 (257)
T 2q88_A 112 -----------------------------------------------------------------GLKSYKDIADNPDAK 126 (257)
T ss_dssp -----------------------------------------------------------------CCCBHHHHHHCTTCC
T ss_pred -----------------------------------------------------------------CCCCHHHHhccCCce
Confidence 28899999755 789
Q ss_pred EEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcC-CceEeeccccc--ccc
Q 003054 583 VGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYC-SKYAMIEPKFK--TAG 659 (852)
Q Consensus 583 vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~-~~~~~v~~~~~--~~~ 659 (852)
||+..|+....+|++.+++..+++.+++.++++++|.+|+ +++++.+...+.+++++.. ..+..+.+... ...
T Consensus 127 i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~gr----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (257)
T 2q88_A 127 IGAPGGGTEEKLALEAGVPRDRVIVVPDGQSGLKMLQDGR----IDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYC 202 (257)
T ss_dssp EEECTTSHHHHHHHHTTCCGGGEEECSSHHHHHHHHHHTS----CSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEE
T ss_pred EEEECCcccHHHHHhcCCCCceEEEcCCHHHHHHHHHcCC----CcEEEcCHHHHHHHHHhCCCcceeeecccCCccccc
Confidence 9999999999999887777778899999999999999999 9999999999999887764 33544443211 346
Q ss_pred eEEEecCCCC-chhhHHHHHHhccccChhHHHHHHHc
Q 003054 660 FGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWF 695 (852)
Q Consensus 660 ~~~~~~k~sp-l~~~in~~il~l~e~G~~~~i~~kw~ 695 (852)
++++++|+++ +++.||++|.++.++|.++++.++|.
T Consensus 203 ~~~~~~k~~~~l~~~l~~~l~~~~~~g~~~~i~~k~~ 239 (257)
T 2q88_A 203 DGAAFRKGDEALRDAFDVELAKLKESGEFAKIIEPYG 239 (257)
T ss_dssp BCCEECGGGHHHHHHHHHHHHHHHHHTHHHHHHGGGT
T ss_pred eEEEEcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHhC
Confidence 7789999876 99999999999999999999999994
No 65
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.80 E-value=5.1e-19 Score=185.86 Aligned_cols=221 Identities=24% Similarity=0.348 Sum_probs=188.5
Q ss_pred CceEEEeeecccCcccceE---EeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHh
Q 003054 344 EKKLRIGVPVKKGFSDFVN---VTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVF 420 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~---~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~ 420 (852)
.++++||+. +.|+||.+ .+ +++ .+.|+++|+++.+++++|+ ++++++. +|.+++.++.
T Consensus 38 ~~~l~v~~~--~~~~P~~~~~~~~-----~~g-~~~G~~~dl~~~~~~~~g~--~~~~~~~---------~~~~~~~~l~ 98 (269)
T 4i62_A 38 KGKLVVALN--PDFAPFEYQKVVD-----GKN-QIVGSDIELAKAIATELGV--ELELSPM---------SFDNVLASVQ 98 (269)
T ss_dssp HTEEEEEEC--SCBTTTBEEEEET-----TEE-EEESHHHHHHHHHHHHHTC--EEEEEEC---------CHHHHHHHHH
T ss_pred CCeEEEEec--CCCCCceeecccC-----CCC-cEeeecHHHHHHHHHHHCC--ceEEEEc---------CHHHHHHHHh
Confidence 468999997 67888877 44 567 8999999999999999997 4555543 4999999999
Q ss_pred cCcccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccC
Q 003054 421 LGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVN 500 (852)
Q Consensus 421 ~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~ 500 (852)
+|++|++++++..+++|.+.+.|+.||.....++++++....
T Consensus 99 ~g~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~-------------------------------------- 140 (269)
T 4i62_A 99 SGKADLAISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSDLA-------------------------------------- 140 (269)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCCEECCEEEEEEGGGTT--------------------------------------
T ss_pred CCCccEEecCCcCCHhHhhceecccchhhcceEEEEECCccc--------------------------------------
Confidence 999999988899999999999999999999999999976322
Q ss_pred CCCCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcC
Q 003054 501 EDFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRG 580 (852)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~ 580 (852)
.|++++||. |
T Consensus 141 --------------------------------------------------------------------~i~~~~dL~--g 150 (269)
T 4i62_A 141 --------------------------------------------------------------------TYQSVNDLA--Q 150 (269)
T ss_dssp --------------------------------------------------------------------TCSSGGGGC---
T ss_pred --------------------------------------------------------------------cccCHHHhC--C
Confidence 288999996 8
Q ss_pred CeEEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCCceEeeccccc---c
Q 003054 581 DNVGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCSKYAMIEPKFK---T 657 (852)
Q Consensus 581 ~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~---~ 657 (852)
++||+..|+....++.+. ++..+++.+++.++.+++|.+|+ +||++.+...+.+++.++.. +.+....+. .
T Consensus 151 ~~i~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 224 (269)
T 4i62_A 151 KKVGAQKGSIQETMAKDL-LQNSSLVSLPKNGNLITDLKSGQ----VDAVIFEEPVAKGFVENNPD-LAIADLNFEKEQD 224 (269)
T ss_dssp CEEEEETTSHHHHHHHHH-CTTSEEEEESCHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHCTT-EEECSCCCCC-CC
T ss_pred CeEEEecCchHHHHHHHh-CCCCcEEecCCHHHHHHHHHcCC----CCEEEeChHHHHHHHHhCCC-CeEEeeccCCCcc
Confidence 999999999998888775 45667889999999999999999 99999999999888888753 444443333 6
Q ss_pred cceEEEecCCCC-chhhHHHHHHhccccChhHHHHHHHccC
Q 003054 658 AGFGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKK 697 (852)
Q Consensus 658 ~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~i~~kw~~~ 697 (852)
.+++++++|++| +.+.+|++|.++.++|.+++|.++|++.
T Consensus 225 ~~~~~~~~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 265 (269)
T 4i62_A 225 DSYAVAMKKDSKELKEAVDKTIQKLKESGELDKLIEDAFKA 265 (269)
T ss_dssp CEECCEEESSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHHhCC
Confidence 688999999988 9999999999999999999999999963
No 66
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.80 E-value=2.8e-19 Score=182.58 Aligned_cols=221 Identities=19% Similarity=0.375 Sum_probs=182.2
Q ss_pred CceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCc
Q 003054 344 EKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGE 423 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~ 423 (852)
.++|+||+.. ++||.+. .++ +..|+++|+++.+++++|++ ++++... +|.+++.+|.+|+
T Consensus 2 ~~~l~v~~~~---~~P~~~~------~~g-~~~G~~~dl~~~~~~~~g~~--~~~~~~~--------~~~~~~~~l~~g~ 61 (228)
T 2pyy_A 2 QQPLLVATRV---IPPFVLS------NKG-ELSGFSIDLWRSIATQIGIE--SKLIEYS--------SVPELISAIKDNK 61 (228)
T ss_dssp --CEEEEECC---BTTTBBC------C----CBSHHHHHHHHHHHHHTCC--EEEEECS--------SHHHHHHHHHTTS
T ss_pred CceEEEEecC---CCCeEEe------cCC-ceEEEeHHHHHHHHHHhCCc--EEEEEcC--------CHHHHHHHHHCCC
Confidence 3679999973 6677654 245 78999999999999999974 5555543 5899999999999
Q ss_pred ccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCCCC
Q 003054 424 FDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNEDF 503 (852)
Q Consensus 424 ~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~~ 503 (852)
+|++++++..+++|.+.+.|+.||...+.++++++....
T Consensus 62 ~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~----------------------------------------- 100 (228)
T 2pyy_A 62 VNLGIAAISITAEREQNFDFSLPIFASGLQIMVRNLESG----------------------------------------- 100 (228)
T ss_dssp CSEECSSCBCCHHHHHHSEECSCSEEEEEEEEEEC---------------------------------------------
T ss_pred cCEEEeccccCHHHHccceecccchhcceEEEEECCccc-----------------------------------------
Confidence 999988888899999999999999999999999976311
Q ss_pred CCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCCeE
Q 003054 504 RGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNV 583 (852)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~v 583 (852)
...+++++||. |++|
T Consensus 101 ---------------------------------------------------------------~~~~~~~~dL~--g~~i 115 (228)
T 2pyy_A 101 ---------------------------------------------------------------TGDIRSIDDLP--GKVV 115 (228)
T ss_dssp ----------------------------------------------------------------CCCCSGGGCT--TCEE
T ss_pred ---------------------------------------------------------------cCCcCCHHHcC--CCeE
Confidence 01288999996 8999
Q ss_pred EEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcC-CceEeecccccccceEE
Q 003054 584 GYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYC-SKYAMIEPKFKTAGFGF 662 (852)
Q Consensus 584 g~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ 662 (852)
|+..|+....++++.+. +++.+.+.++.+++|.+|+ +++++.+...+.+++.+.. ..+.+++..+....+++
T Consensus 116 ~~~~g~~~~~~l~~~~~---~~~~~~~~~~~~~~l~~g~----~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (228)
T 2pyy_A 116 ATTAGSTAATYLREHHI---SVLEVPKIEEAYKALQTKK----ADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGI 188 (228)
T ss_dssp EEETTSHHHHHHHHTTC---EEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECC
T ss_pred EEEcCcHHHHHHHHcCC---ceEecCCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEE
Confidence 99999999999887543 6778899999999999999 9999999988888887763 24777776667778999
Q ss_pred EecCCCCchhhHHHHHHhccccChhHHHHHHHccC
Q 003054 663 VFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKK 697 (852)
Q Consensus 663 ~~~k~spl~~~in~~il~l~e~G~~~~i~~kw~~~ 697 (852)
+++|++++...+|++|..+.++|.+++|.+||+..
T Consensus 189 ~~~~~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~ 223 (228)
T 2pyy_A 189 ILPNNSPYRKPINQALLNLKENGTYQSLYDKWFDP 223 (228)
T ss_dssp EECTTCTTHHHHHHHHHHHHHTTHHHHHHHHHHCC
T ss_pred EEeCChHHHHHHHHHHHHHHhCCcHHHHHHHHcCC
Confidence 99999999999999999999999999999999963
No 67
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.79 E-value=1.5e-18 Score=182.09 Aligned_cols=218 Identities=15% Similarity=0.256 Sum_probs=190.2
Q ss_pred CceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCc
Q 003054 344 EKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGE 423 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~ 423 (852)
.+.++||+. +.++||.+.+ .++ +..|+++|+++.+++++|+ +++++.. +|.+++.++.+|+
T Consensus 30 ~~~l~v~~~--~~~~P~~~~~-----~~g-~~~G~~~dl~~~i~~~~g~--~~~~~~~---------~~~~~~~~l~~g~ 90 (268)
T 3qax_A 30 NRIWIVGTN--ATYPPFEYVD-----AQG-EVVGFDIDLAKAISEKLGK--QLEVREF---------AFDALILNLKKHR 90 (268)
T ss_dssp -CEEEEEEC--SCBTTTBEEC-----TTS-CEESHHHHHHHHHHHHHTC--EEEEEEC---------CGGGHHHHHHHTS
T ss_pred CCeEEEEEC--CCCCCceEEC-----CCC-CEEEEEHHHHHHHHHHhCC--eEEEEec---------CHHHHHHHHhCCC
Confidence 568999986 6788888765 467 8999999999999999996 4555543 4899999999999
Q ss_pred ccEEEeeeeeecCcceeeecccccc--ccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCC
Q 003054 424 FDAVVGDITIVFNRSNYVDFTLPYT--ESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNE 501 (852)
Q Consensus 424 ~D~~~g~~~it~~r~~~vdft~p~~--~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~ 501 (852)
+|+++++++.+++|.+.++| .||. ..+.++++++.. .
T Consensus 91 ~D~~~~~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~-~--------------------------------------- 129 (268)
T 3qax_A 91 IDAILAGMSITPSRQKEIAL-LPYYGDEVQELMVVSKRS-L--------------------------------------- 129 (268)
T ss_dssp SSEECSCCBCCHHHHTTSEE-EEEECCCBCEEEEEEETT-S---------------------------------------
T ss_pred ccEEeecCccCHhHhcceee-ecceecccceEEEEECCC-C---------------------------------------
Confidence 99998889999999999999 9999 888999998763 2
Q ss_pred CCCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCC
Q 003054 502 DFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGD 581 (852)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~ 581 (852)
.|++++||. |+
T Consensus 130 -------------------------------------------------------------------~i~~~~dL~--g~ 140 (268)
T 3qax_A 130 -------------------------------------------------------------------ETPVLPLTQ--YS 140 (268)
T ss_dssp -------------------------------------------------------------------CSCCCCGGG--SS
T ss_pred -------------------------------------------------------------------CCCCHHHhC--CC
Confidence 288999997 89
Q ss_pred eEEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCCceEeecccccccc--
Q 003054 582 NVGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCSKYAMIEPKFKTAG-- 659 (852)
Q Consensus 582 ~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 659 (852)
+||+..|+....++.+ .+..+++.+++.++.+++|.+|+ +||++.+...+.++++++.. +.+++..+....
T Consensus 141 ~i~~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 213 (268)
T 3qax_A 141 SVAVQTGTYQEHYLLS--QPGICVRSFDSTLEVIMEVRYGK----SPVAVLEPSVGRVVLKDFPN-LVATRLELPPECWV 213 (268)
T ss_dssp CEEEETTSHHHHHHHT--STTCCEEEESCHHHHHHHHHTTS----SSEEEECHHHHHHHGGGCTT-EEEEEEECCGGGCB
T ss_pred EEEEecCcHHHHHHHh--CCCceEEecCCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhCCC-cEEecCccCccccc
Confidence 9999999999998887 45567888999999999999999 99999999999999988764 777777777777
Q ss_pred --eEEEecCCCC-chhhHHHHHHhccccChhHHHHHHHccC
Q 003054 660 --FGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKK 697 (852)
Q Consensus 660 --~~~~~~k~sp-l~~~in~~il~l~e~G~~~~i~~kw~~~ 697 (852)
++++++|++| +++.+|++|.++.++|.+++|.++|+..
T Consensus 214 ~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 254 (268)
T 3qax_A 214 LGCGLGVAKDRPEEIQTIQQAITDLKSEGVIQSLTKKWQLS 254 (268)
T ss_dssp CCEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred ccEEEEEeCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHcCC
Confidence 9999999988 9999999999999999999999999964
No 68
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.79 E-value=8.3e-19 Score=186.60 Aligned_cols=227 Identities=16% Similarity=0.229 Sum_probs=190.6
Q ss_pred CceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHH----CCC-ccceEEEecCCCCCCCCCChhHHHHH
Q 003054 344 EKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQE----LPY-AVAYDFVPYGQPDGSSSGSYNDLVYQ 418 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~----l~~-~~~~~~~~~~~~~g~~ngs~~~li~~ 418 (852)
.+.|+||+. +.|+||.+.+ .++ +..|+++|+++++++. +|. .+++++++. .|.+++.+
T Consensus 16 ~~~l~v~~~--~~~~P~~~~~-----~~g-~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~~---------~~~~~~~~ 78 (287)
T 2vha_A 16 NGVIVVGHR--ESSVPFSYYD-----NQQ-KVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPI---------TSQNRIPL 78 (287)
T ss_dssp HTEEEEEEC--SEETTTEEEC-----SSS-CEESHHHHHHHHHHHHHHHHTTCTTCEEEEEEC---------CTTTHHHH
T ss_pred CCeEEEEEc--CCCCCceEEC-----CCC-CcccccHHHHHHHHHHHHHhcCCCCceEEEEEC---------CHHHHHHH
Confidence 578999996 5688888875 457 8999999999999976 562 146666664 37899999
Q ss_pred HhcCcccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecc
Q 003054 419 VFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHR 498 (852)
Q Consensus 419 l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~ 498 (852)
|.+|++|+++++++.+++|.+.++||.||...+.++++++..
T Consensus 79 l~~g~~D~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~-------------------------------------- 120 (287)
T 2vha_A 79 LQNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGG-------------------------------------- 120 (287)
T ss_dssp HHTTSCSEECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTS--------------------------------------
T ss_pred HHCCCeeEEeccccCCcchhhcccccceeeecceEEEEECCC--------------------------------------
Confidence 999999999888889999999999999999999999998653
Q ss_pred cCCCCCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHh
Q 003054 499 VNEDFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIK 578 (852)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~ 578 (852)
+|++++||.
T Consensus 121 ----------------------------------------------------------------------~i~sl~dL~- 129 (287)
T 2vha_A 121 ----------------------------------------------------------------------DIKDFADLK- 129 (287)
T ss_dssp ----------------------------------------------------------------------SCCSGGGGT-
T ss_pred ----------------------------------------------------------------------CCCCHHHcC-
Confidence 178999996
Q ss_pred cCCeEEEEeCchHHHHHHhcC---CCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcC--CceEeecc
Q 003054 579 RGDNVGYQKGSFVLGILKQLG---FDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYC--SKYAMIEP 653 (852)
Q Consensus 579 ~~~~vg~~~~s~~~~~l~~~~---~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~--~~~~~v~~ 653 (852)
|++||+..|+....++.+.. ....+++.+.+.++++++|.+|+ +++++.+...+.+++.+.. ..+.+++.
T Consensus 130 -g~~v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~----vDa~i~~~~~~~~~~~~~~~~~~~~~~~~ 204 (287)
T 2vha_A 130 -GKAVVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGR----AVAFMMDDALLAGERAKAKKPDNWDIVGK 204 (287)
T ss_dssp -TCEEEEETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHHTTSSSGGGEEEESC
T ss_pred -CCEEEEeCCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCC----eeEEEeChHHHHHHHHhCCCCCceEecCC
Confidence 88999999998888776531 12446788999999999999999 9999999998888887642 35777877
Q ss_pred cccccceEEEecCCCC-chhhHHHHHHhccccChhHHHHHHHccCCCCC
Q 003054 654 KFKTAGFGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKKHSSC 701 (852)
Q Consensus 654 ~~~~~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~i~~kw~~~~~~c 701 (852)
.+....++++++|++| ++..||++|.++.++|.++++.++|+.....+
T Consensus 205 ~~~~~~~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~~~ 253 (287)
T 2vha_A 205 PQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKNPIPP 253 (287)
T ss_dssp CSCEEEEEEEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHSCBTT
T ss_pred ccccCceEEEEeCCCHHHHHHHHHHHHHHHhCchHHHHHHHHcCCCCCc
Confidence 7778889999999987 99999999999999999999999999754333
No 69
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.79 E-value=1.4e-18 Score=183.33 Aligned_cols=220 Identities=23% Similarity=0.363 Sum_probs=187.6
Q ss_pred CCceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcC
Q 003054 343 NEKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLG 422 (852)
Q Consensus 343 ~~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g 422 (852)
..++|+||+. +.|+||.+.+ ++ ...|+++|+++++++++|++ ++++.. .|.+++.+|.+|
T Consensus 40 ~~~~l~v~~~--~~~~P~~~~~------~g-~~~G~~~dl~~~i~~~~g~~--v~~~~~---------~~~~~~~~l~~G 99 (272)
T 2pvu_A 40 TKKKVVVGTD--AAFAPFEYMQ------KG-KIVGFDVDLLDAVMKAAGLD--YELKNI---------GWDPLFASLQSK 99 (272)
T ss_dssp CCCCEEEEEC--CCBTTTBEEE------TT-EEESHHHHHHHHHHHHHTCC--EEEEEC---------CHHHHHHHHHHT
T ss_pred cCCeEEEEEC--CCCCCeEEec------CC-eEEEEHHHHHHHHHHHhCCc--eEEEEC---------CHHHHHHHHhCC
Confidence 4578999997 6788888764 46 89999999999999999975 445443 399999999999
Q ss_pred cccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCCC
Q 003054 423 EFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNED 502 (852)
Q Consensus 423 ~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~ 502 (852)
++|++++++..+++|.+.+.|+.||.....++++++..
T Consensus 100 ~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~------------------------------------------ 137 (272)
T 2pvu_A 100 EVDMGISGITITDERKQSYDFSDPYFEATQVILVKQGS------------------------------------------ 137 (272)
T ss_dssp SSSEECSSCBCCHHHHTTEEECSCCEEECEEEEEETTC------------------------------------------
T ss_pred CCCEEEeCCcCCHHHHhcCccchhhhccceEEEEECCC------------------------------------------
Confidence 99999888888999999999999999999999999653
Q ss_pred CCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCCe
Q 003054 503 FRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDN 582 (852)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~ 582 (852)
+|++++||. |++
T Consensus 138 ------------------------------------------------------------------~i~~~~dL~--g~~ 149 (272)
T 2pvu_A 138 ------------------------------------------------------------------PVKNALDLK--GKT 149 (272)
T ss_dssp ------------------------------------------------------------------CCCSGGGGT--TSC
T ss_pred ------------------------------------------------------------------CCCCHHHhC--CCe
Confidence 178899996 889
Q ss_pred EEEEeCchHHHHHHhc-CCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCC-ceEeecccc--ccc
Q 003054 583 VGYQKGSFVLGILKQL-GFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCS-KYAMIEPKF--KTA 658 (852)
Q Consensus 583 vg~~~~s~~~~~l~~~-~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~-~~~~v~~~~--~~~ 658 (852)
||+..|+....++++. + ...+++.+.+.++.+++|.+|+ +|+++.+...+.+++++... .+.+++... ...
T Consensus 150 i~~~~g~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 224 (272)
T 2pvu_A 150 IGVQNATTGQEAAEKLFG-KGPHIKKFETTVVAIMELLNGG----VDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASE 224 (272)
T ss_dssp EEEETTSHHHHHHHHHHC-SSTTEEEESSHHHHHHHHHTTS----CSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCE
T ss_pred EEEEcCchHHHHHHHhcC-CCCeEEEcCCHHHHHHHHHcCC----ccEEEeCHHHHHHHHHhCCCCceEEeccccccCCc
Confidence 9999999988888764 4 3557888999999999999999 99999999999888877632 377776653 666
Q ss_pred ceEEEecCCCCchhhHHHHHHhccccChhHHHHHHHccC
Q 003054 659 GFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKK 697 (852)
Q Consensus 659 ~~~~~~~k~spl~~~in~~il~l~e~G~~~~i~~kw~~~ 697 (852)
.++++++|+..+++.+|++|..+.++|.++++.+||+..
T Consensus 225 ~~~~~~~k~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 263 (272)
T 2pvu_A 225 YYGMIFPKNSELKAKVDEALKNVINSGKYTEIYKKWFGK 263 (272)
T ss_dssp EECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred eEEEEEeCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 889999999559999999999999999999999999964
No 70
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.79 E-value=1.1e-18 Score=185.39 Aligned_cols=219 Identities=18% Similarity=0.263 Sum_probs=189.1
Q ss_pred CceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCc
Q 003054 344 EKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGE 423 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~ 423 (852)
.++|+||+. +.|+||.+.+ .++ ...|+.+|+++.+++++|+ +++++.. .|.+++.+|.+|+
T Consensus 56 ~~~l~v~~~--~~~~P~~~~~-----~~g-~~~G~~~dl~~~i~~~~G~--~v~~~~~---------~~~~~~~~l~~G~ 116 (283)
T 2yln_A 56 KGTVTVGTE--GTYAPFTYHD-----KDG-KLTGYDVEVTRAVAEKLGV--KVEFKET---------QWDSMMAGLKAGR 116 (283)
T ss_dssp TCEEEEEEC--SEETTTEEEC-----TTS-CEESHHHHHHHHHHHHHTC--EEEEEEC---------CGGGHHHHHHHTS
T ss_pred CCeEEEEEC--CCCCCeeEEC-----CCC-CEeeehHHHHHHHHHHcCC--ceEEEEC---------CHHHHHHHHHCCC
Confidence 568999997 5688998876 467 8999999999999999996 4555553 3899999999999
Q ss_pred ccEEEeeeee-ecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCCC
Q 003054 424 FDAVVGDITI-VFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNED 502 (852)
Q Consensus 424 ~D~~~g~~~i-t~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~ 502 (852)
+|++++.+.. +.+|.+.++|+.||...+..+++++..
T Consensus 117 ~D~~~~~~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~------------------------------------------ 154 (283)
T 2yln_A 117 FDVVANQVGLTSPERQATFDKSEPYSWSGAVLVAHNDS------------------------------------------ 154 (283)
T ss_dssp CSEECSSCCCCSHHHHHHEEECSCSEEECEEEEEETTC------------------------------------------
T ss_pred cCEEEecCccCChhhhcceEeccCeeeecEEEEEECCC------------------------------------------
Confidence 9999887887 899999999999999999999999653
Q ss_pred CCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCCe
Q 003054 503 FRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDN 582 (852)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~ 582 (852)
+|++++||. |++
T Consensus 155 ------------------------------------------------------------------~i~s~~dL~--G~~ 166 (283)
T 2yln_A 155 ------------------------------------------------------------------NIKSIADIK--GVK 166 (283)
T ss_dssp ------------------------------------------------------------------SCCSGGGCT--TSE
T ss_pred ------------------------------------------------------------------CCCCHHHhC--CCE
Confidence 178999995 999
Q ss_pred EEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcC-CceEeec-cccc-ccc
Q 003054 583 VGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYC-SKYAMIE-PKFK-TAG 659 (852)
Q Consensus 583 vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~-~~~~~v~-~~~~-~~~ 659 (852)
||+..|+....+|++.+ .+++.+.+..+.+++|.+|+ ++|++.+...+.+++.+.. +.+.+++ ..+. ...
T Consensus 167 v~v~~g~~~~~~l~~~~---~~~~~~~~~~~~~~~l~~g~----vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 239 (283)
T 2yln_A 167 TAQSLTSNYGEKAKAAG---AQLVPVDGLAQSLTLIEQKR----ADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVG 239 (283)
T ss_dssp EEECTTSHHHHHHHHTT---CEEEECSSHHHHHHHHHTTS----CCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEE
T ss_pred EEEecCchHHHHHHHcC---CeEEEeCCHHHHHHHHHcCC----CCEEEecHHHHHHHHHhCCCCcEEEccCcccCCccc
Confidence 99999999988888763 36788889999999999999 9999999999998887763 3477777 6666 778
Q ss_pred eEEEecCCCC-chhhHHHHHHhccccChhHHHHHHHccCC
Q 003054 660 FGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFKKH 698 (852)
Q Consensus 660 ~~~~~~k~sp-l~~~in~~il~l~e~G~~~~i~~kw~~~~ 698 (852)
++++++|++| +++.||++|.++.++|.+++|.+||++..
T Consensus 240 ~~i~~~k~~~~l~~~i~~al~~l~~~g~~~~i~~k~~~~~ 279 (283)
T 2yln_A 240 SGLIVNKGNDEAVAKFSTAINELKADGTLKKLGEQFFGKD 279 (283)
T ss_dssp ECCEEESSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHcCCC
Confidence 9999999987 99999999999999999999999999744
No 71
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.78 E-value=1.7e-18 Score=184.67 Aligned_cols=218 Identities=19% Similarity=0.259 Sum_probs=190.1
Q ss_pred CceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHC---CCccceEEEecCCCCCCCCCChhHHHHHHh
Q 003054 344 EKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQEL---PYAVAYDFVPYGQPDGSSSGSYNDLVYQVF 420 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l---~~~~~~~~~~~~~~~g~~ngs~~~li~~l~ 420 (852)
.++||||+. +.|+||.+.+ .++ ...|+.+|+++.+++++ |+ +++++.. .|.+++.+|.
T Consensus 54 ~~~l~vg~~--~~~~P~~~~~-----~~g-~~~G~~~dl~~~i~~~~~~~g~--~v~~~~~---------~~~~~~~~l~ 114 (291)
T 2yjp_A 54 KGVIRIGVF--GDKPPFGYVD-----ANG-KNQGFDVEIAKDLAKDLLGSPD--KVEFVLT---------EAANRVEYVR 114 (291)
T ss_dssp HTCEEEEEC--SEETTTEEEC-----TTS-CEESHHHHHHHHHHHHHHSCGG--GEEEEEC---------CGGGHHHHHH
T ss_pred CCeEEEEEc--CCCCCceEEC-----CCC-CEeehHHHHHHHHHHHhccCCc--eEEEEEc---------cHHHHHHHHh
Confidence 457999997 6688888776 467 89999999999999999 86 4555553 3789999999
Q ss_pred cCcccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccC
Q 003054 421 LGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVN 500 (852)
Q Consensus 421 ~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~ 500 (852)
+|++|++++++..+.+|.+.++|+.||...+.++++++.. .
T Consensus 115 ~G~~D~~~~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~--~------------------------------------- 155 (291)
T 2yjp_A 115 SGKVDLILANFTQTPERAEAVDFADPYMKVALGVVSPKNK--P------------------------------------- 155 (291)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTS--C-------------------------------------
T ss_pred CCCeeEEEeCCCCChHHHccceeccCeeecceEEEEeCCC--C-------------------------------------
Confidence 9999999888889999999999999999999999999663 2
Q ss_pred CCCCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcC
Q 003054 501 EDFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRG 580 (852)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~ 580 (852)
|++++||. |
T Consensus 156 ---------------------------------------------------------------------i~sl~dL~--g 164 (291)
T 2yjp_A 156 ---------------------------------------------------------------------ITDMAQLK--D 164 (291)
T ss_dssp ---------------------------------------------------------------------CCSGGGGT--T
T ss_pred ---------------------------------------------------------------------CCCHHHhC--C
Confidence 88999996 8
Q ss_pred CeEEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCCceEeecccccccce
Q 003054 581 DNVGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCSKYAMIEPKFKTAGF 660 (852)
Q Consensus 581 ~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 660 (852)
++||+..|+....++++. ++..+++.+++.++.+++|.+|+ +||++.+...+.+++.+... +.+++..+....+
T Consensus 165 k~v~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~~G~----vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 238 (291)
T 2yjp_A 165 QTLLVNKGTTADAFFTKS-HPEVKLLKFDQNTETFDALKDGR----GVALAHDNALLWAWAKENPN-FEVAIGNLGPAEF 238 (291)
T ss_dssp SEEEEETTSHHHHHHHHH-CTTSEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHCTT-EEEEECCSSSCEE
T ss_pred CEEEEecCCcHHHHHHHh-CCCceEEEeCCHHHHHHHHHcCC----ccEEEecHHHHHHHHHhCCC-eEEcCCcccCCcc
Confidence 999999999988888775 35567888899999999999999 99999999999998887764 7777777777777
Q ss_pred -EEEecCCCC-chhhHHHHHHhccccChhHHHHHHHcc
Q 003054 661 -GFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFK 696 (852)
Q Consensus 661 -~~~~~k~sp-l~~~in~~il~l~e~G~~~~i~~kw~~ 696 (852)
+++++|++| +++.||++|.++.++|.++++.++|+.
T Consensus 239 ~~~~~~k~~~~l~~~l~~al~~l~~~g~~~~i~~k~~~ 276 (291)
T 2yjp_A 239 IAPAVQKGNADLLNWVNGEIAAMKKDGRLKAAYEKTLL 276 (291)
T ss_dssp ECCEEETTCHHHHHHHHHHHHHHHHHSHHHHHHHHHTH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhCChHHHHHHHhcc
Confidence 999999988 999999999999999999999999995
No 72
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.78 E-value=1.6e-18 Score=184.96 Aligned_cols=218 Identities=18% Similarity=0.202 Sum_probs=189.1
Q ss_pred CceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHC---CCccceEEEecCCCCCCCCCChhHHHHHHh
Q 003054 344 EKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQEL---PYAVAYDFVPYGQPDGSSSGSYNDLVYQVF 420 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l---~~~~~~~~~~~~~~~g~~ngs~~~li~~l~ 420 (852)
.++++||+. +.++||.+.+ .++ ...|+++|+++.+++++ |++ ++++.. .|.+++.+|.
T Consensus 43 ~~~l~v~~~--~~~~P~~~~~-----~~g-~~~G~~~dl~~~i~~~~~~~g~~--~~~~~~---------~~~~~~~~l~ 103 (292)
T 1xt8_A 43 NGVVRIGVF--GDKPPFGYVD-----EKG-NNQGYDIALAKRIAKELFGDENK--VQFVLV---------EAANRVEFLK 103 (292)
T ss_dssp HSSEEEEEC--SEETTTEEEC-----TTS-CEESHHHHHHHHHHHHHHSCTTC--EEEEEC---------CGGGHHHHHH
T ss_pred CCeEEEEEC--CCCCCeeEEC-----CCC-CEeeEhHHHHHHHHHHhccCCce--EEEEEc---------CHHHHHHHHh
Confidence 467999997 5688888765 467 89999999999999999 975 455443 3889999999
Q ss_pred cCcccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccC
Q 003054 421 LGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVN 500 (852)
Q Consensus 421 ~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~ 500 (852)
+|++|++++++..+++|.+.++|+.||...+.++++++.. .
T Consensus 104 ~G~~D~~~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~--~------------------------------------- 144 (292)
T 1xt8_A 104 SNKVDIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDS--N------------------------------------- 144 (292)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECCCCEEEEEEEEEETTC--C-------------------------------------
T ss_pred CCCeeEEeecCCCCcchhcceeeeccceecceEEEEECCC--C-------------------------------------
Confidence 9999999888888999999999999999999999998653 1
Q ss_pred CCCCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcC
Q 003054 501 EDFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRG 580 (852)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~ 580 (852)
+++++||. |
T Consensus 145 ---------------------------------------------------------------------i~~~~dL~--g 153 (292)
T 1xt8_A 145 ---------------------------------------------------------------------ITSVEDLK--D 153 (292)
T ss_dssp ---------------------------------------------------------------------CCSSGGGT--T
T ss_pred ---------------------------------------------------------------------CCCHHHhC--C
Confidence 78999996 8
Q ss_pred CeEEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCCceEeecccccccce
Q 003054 581 DNVGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCSKYAMIEPKFKTAGF 660 (852)
Q Consensus 581 ~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 660 (852)
++||+..|+....++++. .+..+++.+.+.++.+++|.+|+ +|+++.+...+.+++.+..+ +.+++..+....+
T Consensus 154 ~~i~~~~g~~~~~~l~~~-~~~~~~~~~~~~~~~~~~L~~G~----vDa~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~ 227 (292)
T 1xt8_A 154 KTLLLNKGTTADAYFTQN-YPNIKTLKYDQNTETFAALMDKR----GDALSHDNTLLFAWVKDHPD-FKMGIKELGNKDV 227 (292)
T ss_dssp SEEEEETTSHHHHHHHHH-CTTSEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHHHHHHCTT-EEEEEEEEEEEEE
T ss_pred CEEEEeCCCcHHHHHHHh-CCCceEEEcCCHHHHHHHHHcCC----ccEEEecHHHHHHHHHhCCC-eEEcccccccCce
Confidence 999999999998888775 34557888999999999999999 99999999999998887764 7777766666777
Q ss_pred -EEEecCCCC-chhhHHHHHHhccccChhHHHHHHHcc
Q 003054 661 -GFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWFK 696 (852)
Q Consensus 661 -~~~~~k~sp-l~~~in~~il~l~e~G~~~~i~~kw~~ 696 (852)
+++++|++| +...+|++|.++.++|.+++|.++|+.
T Consensus 228 ~~~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 265 (292)
T 1xt8_A 228 IAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLK 265 (292)
T ss_dssp ECCEEETTCHHHHHHHHHHHHHHHTTTHHHHHHHHHTG
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhCcHHHHHHHHhcC
Confidence 999999988 999999999999999999999999996
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.66 E-value=1.8e-16 Score=165.26 Aligned_cols=214 Identities=15% Similarity=0.273 Sum_probs=176.7
Q ss_pred CceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHC---CCccceEEEecCCCCCCCCCChhHHHHHHh
Q 003054 344 EKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQEL---PYAVAYDFVPYGQPDGSSSGSYNDLVYQVF 420 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l---~~~~~~~~~~~~~~~g~~ngs~~~li~~l~ 420 (852)
.++|+||+. +.++||.+.+. .++ ...|+++|+++.+++++ |++ ++++.. .|.+++.+|.
T Consensus 37 ~~~l~vg~~--~~~~p~~~~~~----~~g-~~~G~~~~l~~~~~~~~~~pg~~--v~~~~~---------~~~~~~~~l~ 98 (259)
T 2v25_A 37 KGQLIVGVK--NDVPHYALLDQ----ATG-EIKGFEVDVAKLLAKSILGDDKK--IKLVAV---------NAKTRGPLLD 98 (259)
T ss_dssp HTCEEEEEC--SEETTTEEEET----TTT-EEESHHHHHHHHHHHHHHSCTTS--EEEEEC---------CTTTHHHHHH
T ss_pred CCeEEEEEC--CCCCCeEEEEC----CCC-eEEEeeHHHHHHHHHHhcCCCcc--eEEEEc---------CHHHHHHHHh
Confidence 467999986 66788877641 256 89999999999999999 864 555543 3789999999
Q ss_pred cCcccEEEeeeeeecCcceeeeccccccccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccC
Q 003054 421 LGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVN 500 (852)
Q Consensus 421 ~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~ 500 (852)
+|++|++++++..+++|.+.++|+.||.....++++++..
T Consensus 99 ~g~~D~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~---------------------------------------- 138 (259)
T 2v25_A 99 NGSVDAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEK---------------------------------------- 138 (259)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGG----------------------------------------
T ss_pred CCCCCEEEecCccCHHHHhcCcccccceeCceEEEEeCCC----------------------------------------
Confidence 9999999887888899999999999999999999998652
Q ss_pred CCCCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcC
Q 003054 501 EDFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRG 580 (852)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~ 580 (852)
++++++||. |
T Consensus 139 --------------------------------------------------------------------~i~~~~dL~--g 148 (259)
T 2v25_A 139 --------------------------------------------------------------------KYKSLADMK--G 148 (259)
T ss_dssp --------------------------------------------------------------------CCCSGGGCT--T
T ss_pred --------------------------------------------------------------------CCCCHHHhC--C
Confidence 277899996 8
Q ss_pred CeEEEEeCchHHHHHHh----cCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCCceEeeccccc
Q 003054 581 DNVGYQKGSFVLGILKQ----LGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCSKYAMIEPKFK 656 (852)
Q Consensus 581 ~~vg~~~~s~~~~~l~~----~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~ 656 (852)
++|++..|+....++++ .+++ .+++.+++.++.+++|..|+ +++++.+...+.+++++..+ +++..+.
T Consensus 149 ~~i~~~~g~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~l~~g~----vDa~~~~~~~~~~~~~~~~~---~~~~~~~ 220 (259)
T 2v25_A 149 ANIGVAQAATTKKAIGEAAKKIGID-VKFSEFPDYPSIKAALDAKR----VDAFSVDKSILLGYVDDKSE---ILPDSFE 220 (259)
T ss_dssp CEEEEETTCSHHHHHHHHHHHTTCC-CEEEEESSHHHHHHHHHTTS----SSEEEEEHHHHTTTCCTTEE---ECSCCCS
T ss_pred CEEEEecCCchHHHHHHHHHhcCCc-eeEEEeCCHHHHHHHHHcCC----CcEEEecHHHHHHHHHhCCC---ccccccc
Confidence 89999999887776654 3442 25678899999999999999 99999998888777766542 4556666
Q ss_pred ccceEEEecCCCC-chhhHHHHHHhccccChhHHHHHHHc
Q 003054 657 TAGFGFVFPLHSP-LVHDVSKAILNVTEGDKMKEIEDAWF 695 (852)
Q Consensus 657 ~~~~~~~~~k~sp-l~~~in~~il~l~e~G~~~~i~~kw~ 695 (852)
...++++++|++| +.+.+|++|.++.++ ++++.+||.
T Consensus 221 ~~~~~~~~~k~~~~l~~~~~~~l~~~~~~--~~~i~~k~~ 258 (259)
T 2v25_A 221 PQSYGIVTKKDDPAFAKYVDDFVKEHKNE--IDALAKKWG 258 (259)
T ss_dssp EEEECCEEETTCHHHHHHHHHHHHHTHHH--HHHHHHHTT
T ss_pred cceeEEEEcCCCHHHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 7788999999985 999999999999999 899999984
No 74
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.74 E-value=5.3e-08 Score=103.97 Aligned_cols=215 Identities=12% Similarity=0.032 Sum_probs=144.9
Q ss_pred CceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCc
Q 003054 344 EKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGE 423 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~ 423 (852)
.++|+||+. |.+.|+.... . ..++.+.+++++|. +++++... +|++++..|.+|+
T Consensus 3 ~~~l~iG~~--p~~~p~~~~~---------~----~~~l~~~l~k~lG~--~ve~~~~~--------~~~~~i~al~~G~ 57 (310)
T 3n5l_A 3 QPVINFGII--STESSQNLKS---------I----WEPFLKDMSQQTGY--QVKAFFAP--------DYAGIIQGMRFDK 57 (310)
T ss_dssp CCEEEEEEC--CSSCHHHHHH---------H----HHHHHHHHHHHHSS--EEEEECCS--------SHHHHHHHHHTTS
T ss_pred CcEEEEEEe--cCCCHHHHHH---------H----HHHHHHHHHHHhCC--CEEEEeCC--------CHHHHHHHHHcCC
Confidence 467999998 6666654321 1 24899999999996 55555443 6999999999999
Q ss_pred ccEEEee-eeeecC--cceeeeccccccc-----cceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhhe
Q 003054 424 FDAVVGD-ITIVFN--RSNYVDFTLPYTE-----SGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVL 495 (852)
Q Consensus 424 ~D~~~g~-~~it~~--r~~~vdft~p~~~-----~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l 495 (852)
+|+++.+ ...... |.....|..++.. ...+++|++..
T Consensus 58 vDi~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~ds----------------------------------- 102 (310)
T 3n5l_A 58 VDIAWYGNKAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKDS----------------------------------- 102 (310)
T ss_dssp CSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETTC-----------------------------------
T ss_pred CCEEEECcHHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECCC-----------------------------------
Confidence 9999754 332222 2233344433210 12356666432
Q ss_pred ecccCCCCCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHH
Q 003054 496 EHRVNEDFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKM 575 (852)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~d 575 (852)
+|++++|
T Consensus 103 -------------------------------------------------------------------------~i~sl~D 109 (310)
T 3n5l_A 103 -------------------------------------------------------------------------KIDSLED 109 (310)
T ss_dssp -------------------------------------------------------------------------SCCSHHH
T ss_pred -------------------------------------------------------------------------CCCCHHH
Confidence 2899999
Q ss_pred HHh--cCCeEEE-EeCch----HHHH-H-HhcCCCC---cceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhh
Q 003054 576 LIK--RGDNVGY-QKGSF----VLGI-L-KQLGFDE---RKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQ 643 (852)
Q Consensus 576 L~~--~~~~vg~-~~~s~----~~~~-l-~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~ 643 (852)
|++ .|++|++ ..++. ...+ | ++.+.+. .+.+...+.++.+.+|..|+ +++.+.+...+..+.++
T Consensus 110 L~~~~kgk~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~G~----vDa~~~~~~~~~~~~~~ 185 (310)
T 3n5l_A 110 MLANAKSLTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVANKQ----VDVATFNTEGMERLELT 185 (310)
T ss_dssp HHHTGGGCEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHTTS----SSEEEEEHHHHHHHHHH
T ss_pred HhhhcCCCEEEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHcCC----ccEEEecchhHHHHHHh
Confidence 943 3778887 33432 2221 2 4445442 13344467778999999999 99999998888887765
Q ss_pred c---CCceEeecccccccceEEEecCCCC--chhhHHHHHHhccccChhHHHHHHHc
Q 003054 644 Y---CSKYAMIEPKFKTAGFGFVFPLHSP--LVHDVSKAILNVTEGDKMKEIEDAWF 695 (852)
Q Consensus 644 ~---~~~~~~v~~~~~~~~~~~~~~k~sp--l~~~in~~il~l~e~G~~~~i~~kw~ 695 (852)
. ..++.++........++++++++.| +++.++++|..+.++|..+++.+++-
T Consensus 186 ~~~~~~~lrvl~~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~~d~~~~~~l~~~g 242 (310)
T 3n5l_A 186 QPEKARQLKVIWKSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGANAEQKKVLADLQ 242 (310)
T ss_dssp CHHHHTTEEEEEEEEEEECCEEEEETTSCHHHHHHHHHHHHHCCCSHHHHHHHHHTT
T ss_pred CccchhCEEEEEECCCCCCCcEEEECCCCHHHHHHHHHHHHhcCCChhHHHHHHhcC
Confidence 3 1246666544344567899999944 99999999999999999888887763
No 75
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.69 E-value=1.4e-07 Score=101.11 Aligned_cols=215 Identities=13% Similarity=0.077 Sum_probs=144.5
Q ss_pred CceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCc
Q 003054 344 EKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGE 423 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~ 423 (852)
.+.|+||+. |.+.|... ....-++++.+++++|. +++++... +|++++..|.+|+
T Consensus 13 ~~~l~~Gv~--p~~~~~~~-------------~~~~~~l~~~L~k~lG~--~ve~~~~~--------~~~~~i~aL~~G~ 67 (321)
T 3p7i_A 13 EKALNFGII--STESQQNL-------------KPQWTPFLQDMEKKLGV--KVNAFFAP--------DYAGIIQGMRFNK 67 (321)
T ss_dssp -CCEEEEEC--CSSCHHHH-------------HHHHHHHHHHHHHHHTS--CEEEECCS--------SHHHHHHHHHTTS
T ss_pred CCcEEEEEe--cCCCHHHH-------------HHHHHHHHHHHHHHHCC--CEEEEecC--------CHHHHHHHHHcCC
Confidence 568999998 55544332 12224799999999996 55555433 6999999999999
Q ss_pred ccEEEe-eeeeecC--cceeeecccccc-----ccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhhe
Q 003054 424 FDAVVG-DITIVFN--RSNYVDFTLPYT-----ESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVL 495 (852)
Q Consensus 424 ~D~~~g-~~~it~~--r~~~vdft~p~~-----~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l 495 (852)
+|+++. +.+++.. |.....|..|+. ....+++|++..
T Consensus 68 vDia~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~y~~~lvv~~ds----------------------------------- 112 (321)
T 3p7i_A 68 VDIAWYGNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKDS----------------------------------- 112 (321)
T ss_dssp CSEEECCHHHHHHHHHHSCEEEEEEEEETTCCSSBCEEEEEETTC-----------------------------------
T ss_pred CcEEEEChHHHHHHHHhcCCEEEEEEeccCCCcceEEEEEEECCC-----------------------------------
Confidence 999974 3444433 223333443221 112356666442
Q ss_pred ecccCCCCCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHH
Q 003054 496 EHRVNEDFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKM 575 (852)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~d 575 (852)
+|++++|
T Consensus 113 -------------------------------------------------------------------------~i~sl~D 119 (321)
T 3p7i_A 113 -------------------------------------------------------------------------PINNLND 119 (321)
T ss_dssp -------------------------------------------------------------------------SCCSHHH
T ss_pred -------------------------------------------------------------------------CCCCHHH
Confidence 2899999
Q ss_pred HHh--cCCeEEE-EeCch----HHHH-H-HhcCCCCcc--eeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhc
Q 003054 576 LIK--RGDNVGY-QKGSF----VLGI-L-KQLGFDERK--LVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQY 644 (852)
Q Consensus 576 L~~--~~~~vg~-~~~s~----~~~~-l-~~~~~~~~~--~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~ 644 (852)
|++ .|+++++ ..|+. .... | ++.+.+... .+.+.+..+.+.+|..|+ ++|.+.+...+..+.++.
T Consensus 120 L~~~~kgk~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~G~----vDa~~~~~~~~~~~~~~~ 195 (321)
T 3p7i_A 120 LLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANKQ----VDVATNNTENLDKLKTSA 195 (321)
T ss_dssp HHHTGGGCEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHTTS----SSEEEEEHHHHHTHHHHC
T ss_pred HHhhcCCCEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHCCC----ceEEEechHHHHHHHHhC
Confidence 942 2668886 33432 2222 2 455555432 344567788999999999 999999988887777653
Q ss_pred ---CCceEeecccccccceEEEecCCCC--chhhHHHHHHhccccChhHHHHHHHc
Q 003054 645 ---CSKYAMIEPKFKTAGFGFVFPLHSP--LVHDVSKAILNVTEGDKMKEIEDAWF 695 (852)
Q Consensus 645 ---~~~~~~v~~~~~~~~~~~~~~k~sp--l~~~in~~il~l~e~G~~~~i~~kw~ 695 (852)
..++.++........++++++|+-| ++..|+++|..+.++|....+.+++-
T Consensus 196 p~~~~~lrvl~~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~d~~~~~~l~~~g 251 (321)
T 3p7i_A 196 PEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERLG 251 (321)
T ss_dssp HHHHTTEEEEEECSCBCCCEEEEETTSCHHHHHHHHHHHHHTTCSHHHHHHHHHHT
T ss_pred cchhccEEEEEEcCCCCCCceeeeCCCCHHHHHHHHHHHHhcCCCHHHHHHHHhcC
Confidence 2347776654445567899999944 99999999999999998888877663
No 76
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.58 E-value=3.7e-07 Score=91.13 Aligned_cols=182 Identities=9% Similarity=-0.012 Sum_probs=133.6
Q ss_pred eEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEeeeeeecC------cceeeeccccc
Q 003054 374 SVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFN------RSNYVDFTLPY 447 (852)
Q Consensus 374 ~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~~~it~~------r~~~vdft~p~ 447 (852)
++.|+.--|.+.+. |+ ++++.... .++..+..|++|++|+++.+.+.+++ |...+||+.||
T Consensus 29 ~yeGlatgl~~~f~---gi--~~~i~~mr--------g~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~y 95 (231)
T 2ozz_A 29 LYEGLASGLKAQFD---GI--PFYYAHMR--------GADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHT 95 (231)
T ss_dssp HHHHHHHHHHHTTT---TS--CEEEEECS--------CHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTS
T ss_pred hhhHHHHHHHHHhc---CC--cEEEEEcc--------ChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCc
Confidence 78888888887773 54 55555542 58999999999999999999999999 99999999999
Q ss_pred cccceEEEEEccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCCCCCCCcccccchhHHHHHHHhhhccc
Q 003054 448 TESGVSMIVPIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNEDFRGPAGQQVGTSFWFSFSTMVFSQR 527 (852)
Q Consensus 448 ~~~~~~~vv~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 527 (852)
+.+...++++.+....
T Consensus 96 Yv~~h~li~~~~~~~~---------------------------------------------------------------- 111 (231)
T 2ozz_A 96 YVGEHQLICRKGESGN---------------------------------------------------------------- 111 (231)
T ss_dssp SSCCEEEEEETTCGGG----------------------------------------------------------------
T ss_pred cccCeEEEEeCCCccc----------------------------------------------------------------
Confidence 9888888888663121
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCCeEEEEeCchHHHHHHhcCCCCcceee
Q 003054 528 ERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVV 607 (852)
Q Consensus 528 ~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~ 607 (852)
| ++||++.||.-...+.+..+....+..
T Consensus 112 ------------------------------------------i----------krVGvd~gS~dq~~lt~~~~~g~~Ve~ 139 (231)
T 2ozz_A 112 ------------------------------------------V----------KRVGLDSRSADQKIMTDVFFGDSDVER 139 (231)
T ss_dssp ------------------------------------------C----------CEEEECTTCHHHHHHHHHHHTTSCCEE
T ss_pred ------------------------------------------c----------EEEEecCCChhHHHHHhhhcCCCeEEE
Confidence 3 699999999988888774444556677
Q ss_pred c-CCHhHHHHHhhcccccCceeEEEe--chhHHHHHHhhcCCceEeecc---cccccceEEEecCCCC-chhhHHHHHHh
Q 003054 608 Y-NSPEDCHELFQKGSVNGGIAAAFD--EIPYMKLLIGQYCSKYAMIEP---KFKTAGFGFVFPLHSP-LVHDVSKAILN 680 (852)
Q Consensus 608 ~-~~~~~~~~~l~~g~~~~g~~a~~~--~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~~~~~k~sp-l~~~in~~il~ 680 (852)
+ .+..+++++|.+|+ +||++. +.+... ...... ...+.. ........++++||.+ +++.+|++|..
T Consensus 140 ve~~y~~~i~~L~~G~----IDA~Iwn~d~~~a~--~~~~l~-~~~l~~~~~~~~~~eavI~v~k~n~~L~~~ln~~I~~ 212 (231)
T 2ozz_A 140 VDLSYHESLQRIVKGD----VDAVIWNVVAENEL--TMLGLE-ATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVVDK 212 (231)
T ss_dssp EECCHHHHHHHHHHTS----CCEEEEEC-CHHHH--HHTTEE-EEECCSCHHHHHTTCEEEEEETTCHHHHHHHHHHCCH
T ss_pred EECCHHHHHHHHHcCC----ccEEEEcCcchhhh--cCCCcc-eeccccccccccCCceEEEEECCCHHHHHHHHHHhHH
Confidence 8 78899999999999 999999 666555 111111 111222 2344566688999964 88778776642
Q ss_pred ccccChhHHHHHHHc
Q 003054 681 VTEGDKMKEIEDAWF 695 (852)
Q Consensus 681 l~e~G~~~~i~~kw~ 695 (852)
..+..+.++..
T Consensus 213 ----~~v~~~Q~~V~ 223 (231)
T 2ozz_A 213 ----HALLAHQQRVV 223 (231)
T ss_dssp ----HHHHHHHHHHH
T ss_pred ----HHHHHHHHHHH
Confidence 34555666665
No 77
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=97.97 E-value=6.3e-05 Score=79.81 Aligned_cols=118 Identities=20% Similarity=0.260 Sum_probs=74.0
Q ss_pred cCCHHHHHhcCCeEEEEeCchHHH----HHHhcCCCCccee-ecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhc
Q 003054 570 ITDVKMLIKRGDNVGYQKGSFVLG----ILKQLGFDERKLV-VYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQY 644 (852)
Q Consensus 570 i~sl~dL~~~~~~vg~~~~s~~~~----~l~~~~~~~~~~~-~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~ 644 (852)
|++++||. |++|++..|+..+. +|++.+.+...+. .+.+..+..++|..|+ ++|++...++......+.
T Consensus 97 i~s~~dL~--Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~G~----vDa~~~~~~~~~~~~~~~ 170 (308)
T 2x26_A 97 IKTVADLK--GHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGN----VDAWAIWDPYYSAALLQG 170 (308)
T ss_dssp CCSGGGGT--TSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTS----SSEEEEETTHHHHHHHHS
T ss_pred CCCHHHcC--CCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHcCC----CCEEEecchhHHHHHhcC
Confidence 88999997 89999987876554 3455666544442 3456788999999999 999988877777666543
Q ss_pred CCceEeecc--cccccceEEEec----C-CCCchhhHHHHHHhc----cccC-hhHHHHHHHc
Q 003054 645 CSKYAMIEP--KFKTAGFGFVFP----L-HSPLVHDVSKAILNV----TEGD-KMKEIEDAWF 695 (852)
Q Consensus 645 ~~~~~~v~~--~~~~~~~~~~~~----k-~spl~~~in~~il~l----~e~G-~~~~i~~kw~ 695 (852)
.+.++.. .+......+++. + +..++..|++++.+. .+++ ...++..+|+
T Consensus 171 --~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~ 231 (308)
T 2x26_A 171 --GVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTM 231 (308)
T ss_dssp --SEEEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred --CcEEEecCCCcCCcceEEEEcHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHh
Confidence 2333322 222222233333 2 334777888877763 3333 3445556665
No 78
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=97.86 E-value=0.00012 Score=78.28 Aligned_cols=92 Identities=21% Similarity=0.235 Sum_probs=59.1
Q ss_pred cCCHHHHHhcCCeEEEEeCchHH----HHHHhcCCCCcceeecC-CHhHHHHHhhcccccCceeEEEechhHHHHHHhhc
Q 003054 570 ITDVKMLIKRGDNVGYQKGSFVL----GILKQLGFDERKLVVYN-SPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQY 644 (852)
Q Consensus 570 i~sl~dL~~~~~~vg~~~~s~~~----~~l~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~ 644 (852)
|++++||. |++|++..|+... .+|++.+.+...+.... +..+...+|.+|+ ++|++...++......+.
T Consensus 123 I~s~~DLk--Gk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~----vDa~~~~~p~~~~~~~~~ 196 (324)
T 3ksx_A 123 LRTVADLK--GKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYLSPANARAAFAAGQ----VDAWAIWDPWYSALTLDG 196 (324)
T ss_dssp CCSGGGGT--TCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTC----CSEEEEETTHHHHHHHTT
T ss_pred CCCHHHhC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHcCC----CCEEEEccHHHHHHHhcC
Confidence 89999997 9999998887543 44556666554433222 6788999999999 999888877777665543
Q ss_pred CCceEeecccccccceEEEecCC
Q 003054 645 CSKYAMIEPKFKTAGFGFVFPLH 667 (852)
Q Consensus 645 ~~~~~~v~~~~~~~~~~~~~~k~ 667 (852)
--++......+......+++++.
T Consensus 197 ~~~~l~~~~~~~~~~~~~~~~~~ 219 (324)
T 3ksx_A 197 SARLLANGEGLGLTGGFFLSSRR 219 (324)
T ss_dssp SEEEEEESTTSCCCCEEEEEEHH
T ss_pred CcEEEecccccCCCccEEEECHH
Confidence 21122223333333445555543
No 79
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=97.83 E-value=8.8e-05 Score=80.33 Aligned_cols=106 Identities=14% Similarity=0.124 Sum_probs=64.5
Q ss_pred cCCHHHHHhcCCeEEEEeCchHH----HHHHhcCCCCcceeecC-CHhHHHHHhhcccccCceeEEEechhHHHHHHhhc
Q 003054 570 ITDVKMLIKRGDNVGYQKGSFVL----GILKQLGFDERKLVVYN-SPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQY 644 (852)
Q Consensus 570 i~sl~dL~~~~~~vg~~~~s~~~----~~l~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~ 644 (852)
|++++||. |++||+..|+... .+|++.+.+...+..+. +..+...+|.+|+ ++|++...+.........
T Consensus 111 i~s~~DLk--Gk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~----vDa~~~~~~~~~~~~~g~ 184 (348)
T 3uif_A 111 AKSIKDLK--GKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNVNPQVGAAALASGT----VDGFFSLFDSYILEDRGV 184 (348)
T ss_dssp CCSGGGGT--TSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECCCHHHHHHHHHHTS----SSEEEESTTHHHHHHTTS
T ss_pred CCCHHHcC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEECCHHHHHHHHHcCC----CCEEEechHHHHHHhcCC
Confidence 89999997 9999998887653 44555666654444333 6678899999999 999888777654322221
Q ss_pred CCceEeecccc--cccceEEEecCC----CC-chhhHHHHHHhc
Q 003054 645 CSKYAMIEPKF--KTAGFGFVFPLH----SP-LVHDVSKAILNV 681 (852)
Q Consensus 645 ~~~~~~v~~~~--~~~~~~~~~~k~----sp-l~~~in~~il~l 681 (852)
.+.+....+.. .....+++++++ .| ++..|.+++.+.
T Consensus 185 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~a 228 (348)
T 3uif_A 185 GKIIWSTKTAPVDWKLMGGVWARNDFVKQNPEITQAIVTAYLKS 228 (348)
T ss_dssp EEEEEEGGGSCGGGSCCEEEEEEHHHHHHCHHHHHHHHHHHHHH
T ss_pred cEEEEeccccCCCCcceeEEEECHHHHHHCHHHHHHHHHHHHHH
Confidence 12111111111 123456666665 44 555565555443
No 80
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=97.65 E-value=0.0001 Score=79.52 Aligned_cols=120 Identities=15% Similarity=0.069 Sum_probs=76.5
Q ss_pred cCCHHHH-HhcCCeEEEEeCchHH-----HHHHhcCCCCc--ceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHH
Q 003054 570 ITDVKML-IKRGDNVGYQKGSFVL-----GILKQLGFDER--KLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLI 641 (852)
Q Consensus 570 i~sl~dL-~~~~~~vg~~~~s~~~-----~~l~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~ 641 (852)
|++++|| . |++||+..++... .+|++.+.+.. +++.+ +..+...+|.+|+ ++|++...++.....
T Consensus 145 I~s~~DL~k--Gk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~G~----vDa~~~~~p~~~~~~ 217 (341)
T 3un6_A 145 LNEFNNNGD--DYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSEHR----ITGYSVAEPFGALGE 217 (341)
T ss_dssp GGGCCSSSS--CEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHTTS----CSEEEEETTHHHHHH
T ss_pred CCCHHHhCC--CCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHcCC----CCEEEecCCHHHHHH
Confidence 8899999 6 8999998754332 35556666543 34444 4678899999999 999998888877666
Q ss_pred hhcCCceEeecccc-ccc-ceEEEecCC----CC-----chhhHHHHHHhccccChhHHHHHHHcc
Q 003054 642 GQYCSKYAMIEPKF-KTA-GFGFVFPLH----SP-----LVHDVSKAILNVTEGDKMKEIEDAWFK 696 (852)
Q Consensus 642 ~~~~~~~~~v~~~~-~~~-~~~~~~~k~----sp-----l~~~in~~il~l~e~G~~~~i~~kw~~ 696 (852)
.+...+.......+ ... ..++++++. .| ++..+++++..+.+++.-.++..+|++
T Consensus 218 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 283 (341)
T 3un6_A 218 KLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFK 283 (341)
T ss_dssp HSSCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSS
T ss_pred hcCCeEEEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhC
Confidence 55432222222222 222 245666554 44 666677777777777644466667764
No 81
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=97.42 E-value=0.00066 Score=71.64 Aligned_cols=76 Identities=11% Similarity=-0.020 Sum_probs=52.4
Q ss_pred eEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEee-eeeec---Ccceeeeccccccc
Q 003054 374 SVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGD-ITIVF---NRSNYVDFTLPYTE 449 (852)
Q Consensus 374 ~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~-~~it~---~r~~~vdft~p~~~ 449 (852)
.+.|+.+.+-+-+.++.|+ +++++... ....++.+|.+|++|+++++ ..... +......+..++..
T Consensus 16 ~~~~~~va~~~g~~~~~Gl--~v~~~~~~--------~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 85 (302)
T 3ix1_A 16 VHTFLYVAIENGYFAEEGL--DVDIVFPT--------NPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRS 85 (302)
T ss_dssp GGHHHHHHHHTTHHHHTTE--EEEEECCS--------STTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECS
T ss_pred ccHHHHHHHHcChHHHcCC--cEEEecCC--------CCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEecc
Confidence 4567778888888888885 55555443 34589999999999999876 22222 22335556666666
Q ss_pred cceEEEEEcc
Q 003054 450 SGVSMIVPIK 459 (852)
Q Consensus 450 ~~~~~vv~~~ 459 (852)
.+..+++++.
T Consensus 86 ~~~~l~~~~~ 95 (302)
T 3ix1_A 86 PLNHVMFLAE 95 (302)
T ss_dssp CCEEEEEEGG
T ss_pred CCEEEEEECC
Confidence 7788888755
No 82
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=97.38 E-value=0.0015 Score=70.00 Aligned_cols=136 Identities=16% Similarity=0.157 Sum_probs=97.5
Q ss_pred HHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEeeeeee----cCcceeeeccccccccceEEEEEccCCC
Q 003054 387 IQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIV----FNRSNYVDFTLPYTESGVSMIVPIKDSK 462 (852)
Q Consensus 387 a~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~~~it----~~r~~~vdft~p~~~~~~~~vv~~~~~~ 462 (852)
.+..|+ +++++.+. ++..++.+|.+|++|+++++.... .++.....+..++...+..+++++....
T Consensus 59 ~~~~g~--~v~~~~~~--------~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (346)
T 3qsl_A 59 FKDEGL--DVSIADFA--------GGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNLP 128 (346)
T ss_dssp HHHTTC--EEEEEECS--------SHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTTCT
T ss_pred hHhhCC--eEEEEecC--------ChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCccc
Confidence 356675 55555544 688999999999999988765443 4555666677777667778888765211
Q ss_pred CCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCCCCCCCcccccchhHHHHHHHhhhccccccccchhhHHHHHH
Q 003054 463 KRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNEDFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARIVVIVW 542 (852)
Q Consensus 463 ~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~v~~~w 542 (852)
T Consensus 129 -------------------------------------------------------------------------------- 128 (346)
T 3qsl_A 129 -------------------------------------------------------------------------------- 128 (346)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCCeEEEE-eCchHH----HHHHhcCCCC--cceeecCCHhHHH
Q 003054 543 CFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNVGYQ-KGSFVL----GILKQLGFDE--RKLVVYNSPEDCH 615 (852)
Q Consensus 543 ~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~vg~~-~~s~~~----~~l~~~~~~~--~~~~~~~~~~~~~ 615 (852)
+|++++||. |++|++. .|+... .+|++.+.+. .+++.+....+..
T Consensus 129 --------------------------~i~s~~DL~--Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~ 180 (346)
T 3qsl_A 129 --------------------------GYKGPADLK--GRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAV 180 (346)
T ss_dssp --------------------------TCCSGGGGT--TCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHH
T ss_pred --------------------------CCCChHHcC--CCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHH
Confidence 289999996 9999997 576443 4455666653 3456676777899
Q ss_pred HHhhcccccCceeEEEechhHHHHHHhhc
Q 003054 616 ELFQKGSVNGGIAAAFDEIPYMKLLIGQY 644 (852)
Q Consensus 616 ~~l~~g~~~~g~~a~~~~~~~~~~~~~~~ 644 (852)
.+|.+|+ ++|++...++......+.
T Consensus 181 ~al~~G~----vDa~~~~~p~~~~~~~~g 205 (346)
T 3qsl_A 181 TALRSGQ----IDAISNTDPVVSMLETSG 205 (346)
T ss_dssp HHHHHTS----CSEEEEETTHHHHHHHTT
T ss_pred HHHHcCC----ccEEEecchhHHHHHhCC
Confidence 9999999 999998877776655443
No 83
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=97.28 E-value=0.0043 Score=65.51 Aligned_cols=121 Identities=14% Similarity=0.150 Sum_probs=80.9
Q ss_pred CcCCHHHHHh------cCCeEEEE-eCchHH----HHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHH
Q 003054 569 TITDVKMLIK------RGDNVGYQ-KGSFVL----GILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYM 637 (852)
Q Consensus 569 ~i~sl~dL~~------~~~~vg~~-~~s~~~----~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~ 637 (852)
+++|++||+. ....+|.. .|+..+ .+++..+.+. ..+.|....+.+.+|..|+ +++++......
T Consensus 122 ~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~~-~~Vpy~G~~~a~~aL~~G~----VD~~~~~~~~~ 196 (312)
T 2f5x_A 122 PPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVNL-LTIPYKGTAPAMNDLLGKQ----VDLMCDQTTNT 196 (312)
T ss_dssp SCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCCC-EEEECSSHHHHHHHHHTTS----SCEEEEEHHHH
T ss_pred CCCCHHHHHHHHHhCCCceEEeCCCCCcHHHHHHHHHHHHHCCCe-EEeccCChHHHHHHHHcCC----ccEEEechHHH
Confidence 4899999984 23467765 355332 2334455543 3568998899999999999 99999887666
Q ss_pred HHHHhhc-CCceEeec--------c--ccc---------ccceEEEecCCCC--chhhHHHHHHhccccChhHHHHHHH
Q 003054 638 KLLIGQY-CSKYAMIE--------P--KFK---------TAGFGFVFPLHSP--LVHDVSKAILNVTEGDKMKEIEDAW 694 (852)
Q Consensus 638 ~~~~~~~-~~~~~~v~--------~--~~~---------~~~~~~~~~k~sp--l~~~in~~il~l~e~G~~~~i~~kw 694 (852)
..+++.. .+-+-+.. + .+. ...++++.|++-| ++..+++++.++.+++.+++..+++
T Consensus 197 ~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 275 (312)
T 2f5x_A 197 TQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQL 275 (312)
T ss_dssp HHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHcCCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 5555432 22111111 1 111 1236889999966 9999999999999998877766554
No 84
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=96.90 E-value=0.013 Score=61.79 Aligned_cols=122 Identities=18% Similarity=0.178 Sum_probs=81.3
Q ss_pred CcCCHHHHHhc------CCeEEEE-eCchHH----HHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHH
Q 003054 569 TITDVKMLIKR------GDNVGYQ-KGSFVL----GILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYM 637 (852)
Q Consensus 569 ~i~sl~dL~~~------~~~vg~~-~~s~~~----~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~ 637 (852)
+++|++||+.. ...+|.. .|+..+ .+++..+.+. ..+.|....+.+.+|..|+ +++++......
T Consensus 126 ~~~tl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~~-~~Vpy~G~~~a~~al~~G~----vD~~~~~~~~~ 200 (314)
T 2dvz_A 126 PAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTDI-VHVPYKGSGPAVADAVGGQ----IELIFDNLPSS 200 (314)
T ss_dssp SCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCCC-EEEECSSHHHHHHHHHHTS----SSEEEEEHHHH
T ss_pred CCCCHHHHHHHHHhCCCcEEEeCCCCCcHHHHHHHHHHHHhCCCe-EEcccCCHHHHHHHHHcCC----ceEEEEcHHHH
Confidence 38999999852 2366665 355332 2334455543 3568998899999999999 99999887666
Q ss_pred HHHHhhc-CCceEeec--------c--cc---------cccceEEEecCCCC--chhhHHHHHHhccccChhHHHHHHHc
Q 003054 638 KLLIGQY-CSKYAMIE--------P--KF---------KTAGFGFVFPLHSP--LVHDVSKAILNVTEGDKMKEIEDAWF 695 (852)
Q Consensus 638 ~~~~~~~-~~~~~~v~--------~--~~---------~~~~~~~~~~k~sp--l~~~in~~il~l~e~G~~~~i~~kw~ 695 (852)
..+++.. .+-+-+.+ + .+ ....++++.|++-| .+..+++++.++.+++.+++..+++-
T Consensus 201 ~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~g 280 (314)
T 2dvz_A 201 MPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQG 280 (314)
T ss_dssp HHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHCC
Confidence 5555432 22121111 0 01 12236889999966 99999999999999988887766653
No 85
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=96.87 E-value=0.0055 Score=63.28 Aligned_cols=132 Identities=11% Similarity=0.064 Sum_probs=87.9
Q ss_pred HhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeC------Cccc-ccHHHHHH
Q 003054 8 QLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDN------QYGE-EMIPSLTD 80 (852)
Q Consensus 8 ~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~------~~G~-~~~~~l~~ 80 (852)
..+.+.++|+|......+ + +..+..++...++.+++++.+.|.++++++..+. .... ...+.|.+
T Consensus 72 ~~~~~~~iPvV~~~~~~~-------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~ 143 (276)
T 2h0a_A 72 EGRLPTERPVVLVDAQNP-------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGFQE 143 (276)
T ss_dssp --CCSCSSCEEEESSCCT-------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHHHH
T ss_pred HHHhhcCCCEEEEeccCC-------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHHHH
Confidence 344567888888754321 1 3456667778888899998888999999998543 3455 67889999
Q ss_pred HHHhCCceeeeeeecCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHHcCCcccceEEE
Q 003054 81 ALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWI 148 (852)
Q Consensus 81 ~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi 148 (852)
++++.|+++.....+..+.+..+-...+.++.+. .+++|+ +.+...+..+++++++.|+..|+-+-+
T Consensus 144 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 212 (276)
T 2h0a_A 144 ALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVRLGLTPGRDVRV 212 (276)
T ss_dssp HHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHTTSCTTTTSEEE
T ss_pred HHHHcCCCCChHHeeecCCChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCCeEE
Confidence 9999998754321111112234444556666544 477776 566777889999999999876544433
No 86
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=96.81 E-value=0.017 Score=60.67 Aligned_cols=120 Identities=13% Similarity=0.048 Sum_probs=81.2
Q ss_pred CcCCHHHHHhc------CCeEEEE-eCchHH----HHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHH
Q 003054 569 TITDVKMLIKR------GDNVGYQ-KGSFVL----GILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYM 637 (852)
Q Consensus 569 ~i~sl~dL~~~------~~~vg~~-~~s~~~----~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~ 637 (852)
+++|++||+.. ...+|.. .|+..+ .+++..+.+. ..+.|....+.+..|..|+ +++++.....+
T Consensus 113 ~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~G~~~-~~Vpy~g~~~a~~al~~G~----vD~~~~~~~~~ 187 (301)
T 2qpq_A 113 KYKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTHM-VHVPYKGCGPALNDVLGSQ----IGLAVVTASSA 187 (301)
T ss_dssp SCCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCCC-EEEECSSHHHHHHHHHTTS----SSCEEEEHHHH
T ss_pred CCCCHHHHHHHHHhCCCceEEecCCCCcHHHHHHHHHHHHhCCCe-EEeccCChHHHHHHHHCCC----ccEEEEcHHHH
Confidence 38999999852 2366664 244333 2334455543 3568999999999999999 99999887666
Q ss_pred HHHHhhcCCceEee---cc----------c--------c-cccceEEEecCCCC--chhhHHHHHHhccccChhHHHHHH
Q 003054 638 KLLIGQYCSKYAMI---EP----------K--------F-KTAGFGFVFPLHSP--LVHDVSKAILNVTEGDKMKEIEDA 693 (852)
Q Consensus 638 ~~~~~~~~~~~~~v---~~----------~--------~-~~~~~~~~~~k~sp--l~~~in~~il~l~e~G~~~~i~~k 693 (852)
..+++.. +++.+ .+ . + ....++++.|++-| ++..+++++.++.+++.+++..++
T Consensus 188 ~~~i~~g--~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~~~~~~~~~~ 265 (301)
T 2qpq_A 188 IPFIKAG--KLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKLAD 265 (301)
T ss_dssp HHHHHTT--SEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhcC--CeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 5554432 13222 10 0 1 12246889999966 999999999999999888877766
Q ss_pred Hc
Q 003054 694 WF 695 (852)
Q Consensus 694 w~ 695 (852)
+-
T Consensus 266 ~g 267 (301)
T 2qpq_A 266 LG 267 (301)
T ss_dssp HT
T ss_pred CC
Confidence 53
No 87
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=96.67 E-value=0.0015 Score=56.58 Aligned_cols=75 Identities=15% Similarity=0.022 Sum_probs=61.6
Q ss_pred HHHHhhhhheecccCCCCCCCcccccchhHHHHHHHhhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHhhhhccceeee
Q 003054 486 IFIGFVVWVLEHRVNEDFRGPAGQQVGTSFWFSFSTMVFSQ-RE-RVISNLARIVVIVWCFVVLILTQSYTASLTSLLTV 563 (852)
Q Consensus 486 i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~ 563 (852)
++.+++++.+|+..+ +....++.+++||++.++...| ++ .|.+..+|++.++|+++++.+.+...+.+++.++.
T Consensus 20 ~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~ 95 (103)
T 2k1e_A 20 EEASKKAVEAERGAP----GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVR 95 (103)
T ss_dssp HHHHHHHHHHHTTST----TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGG
T ss_pred HHHHHhhhhhccCCC----CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788887643 2344589999999999999887 44 67899999999999999999999999999998865
Q ss_pred c
Q 003054 564 Q 564 (852)
Q Consensus 564 ~ 564 (852)
.
T Consensus 96 ~ 96 (103)
T 2k1e_A 96 R 96 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 88
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=96.63 E-value=0.012 Score=61.04 Aligned_cols=127 Identities=11% Similarity=0.059 Sum_probs=85.0
Q ss_pred CCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEe--CCcccccHHHHHHHHHhCCceee
Q 003054 13 SQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVD--NQYGEEMIPSLTDALQAIDTRVP 90 (852)
Q Consensus 13 ~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d--~~~G~~~~~~l~~~l~~~g~~v~ 90 (852)
.++|+|......+. .++...+..++...+..+++++.+.|.++++++..+ ........+.+.+++++.|+++.
T Consensus 86 ~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~ 160 (289)
T 1dbq_A 86 RHIPMVVMDWGEAK-----ADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVP 160 (289)
T ss_dssp TTSCEEEEECSSCC-----SSSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHHHHHHHHTTCCCC
T ss_pred cCCCEEEEccCCCc-----cCcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCC
Confidence 79999988654321 123345566777788889999888899999999843 34567788999999999998764
Q ss_pred eeeecCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHHcCCcccce
Q 003054 91 YRSVISPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGC 145 (852)
Q Consensus 91 ~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~ 145 (852)
....+..+.+..+-...+.++.+ .++++|+. .+...+..+++++++.|+..++-
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~d 216 (289)
T 1dbq_A 161 ESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQD 216 (289)
T ss_dssp GGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE-SCHHHHHHHHHHHHHTTCCTTTT
T ss_pred hHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCCc
Confidence 32222212223344455566554 35788765 45667888999999999975543
No 89
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=96.54 E-value=0.0067 Score=63.17 Aligned_cols=126 Identities=10% Similarity=-0.026 Sum_probs=84.2
Q ss_pred CCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeC--CcccccHHHHHHHHHhCCceee
Q 003054 13 SQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDN--QYGEEMIPSLTDALQAIDTRVP 90 (852)
Q Consensus 13 ~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~--~~G~~~~~~l~~~l~~~g~~v~ 90 (852)
.++|+|......+. +.+..+..++...+..+++++.+.|.++++++..+. .......+.|.+++++.|+++.
T Consensus 83 ~~iPvV~~~~~~~~------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 156 (288)
T 2qu7_A 83 LKIPIMTLDRELES------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNVN 156 (288)
T ss_dssp GGSCEEEESCCCSS------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 67898887553321 234456677778888899998888999999998542 3456678889999999998764
Q ss_pred eeeec--CCCC----ChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccce
Q 003054 91 YRSVI--SPLA----TDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGC 145 (852)
Q Consensus 91 ~~~~~--~~~~----~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~ 145 (852)
....+ ..+. +..+-...+.++.+.++++|+. .+...+..++++++++|+..++-
T Consensus 157 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~d 216 (288)
T 2qu7_A 157 PSLIHYSDQQLGTNAQIYSGYEATKTLLSKGIKGIVA-TNHLLLLGALQAIKESEKEIKKD 216 (288)
T ss_dssp GGGEEECCSSCSHHHHHHHHHHHHHHHHHTTCCEEEE-CSHHHHHHHHHHHHHSSCCBTTT
T ss_pred cceEEeccCCccccCCHHHHHHHHHHHHhcCCCEEEE-CCcHHHHHHHHHHHHhCCCCCCc
Confidence 32222 2111 1222333444444348898775 45667888999999999875543
No 90
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=96.53 E-value=0.0059 Score=65.12 Aligned_cols=58 Identities=17% Similarity=0.272 Sum_probs=43.7
Q ss_pred cCCHHHHHhcCCeEEEE-eCchH----HHHHHhcCCCCcc--eeecCCHhHHHHHhhcccccCceeEEEec
Q 003054 570 ITDVKMLIKRGDNVGYQ-KGSFV----LGILKQLGFDERK--LVVYNSPEDCHELFQKGSVNGGIAAAFDE 633 (852)
Q Consensus 570 i~sl~dL~~~~~~vg~~-~~s~~----~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~g~~~~g~~a~~~~ 633 (852)
|++++||. +++|++. .|+.. +.+++..+.+... .+.|....+.+.+|..|+ +++++..
T Consensus 138 i~sl~DL~--gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~G~----vDa~~~~ 202 (327)
T 4ddd_A 138 ISVIDDIK--GKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCDNK----IDVMVDV 202 (327)
T ss_dssp CCSGGGGT--TSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHTTS----CSBEEEE
T ss_pred CCCHHHhC--CCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHcCC----CCEEEEc
Confidence 89999997 8899884 56543 3445556665433 468889999999999999 8988874
No 91
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=96.53 E-value=0.013 Score=60.26 Aligned_cols=136 Identities=11% Similarity=0.029 Sum_probs=89.0
Q ss_pred hcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeC--CcccccHHHHHHHHHhCC
Q 003054 9 LGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDN--QYGEEMIPSLTDALQAID 86 (852)
Q Consensus 9 i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~--~~G~~~~~~l~~~l~~~g 86 (852)
.+.+.++|+|......+. +.+..+..++...+..+++++...|.++++++..+. .......+.|.+++++.|
T Consensus 77 ~l~~~~iPvV~~~~~~~~------~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g 150 (275)
T 3d8u_A 77 LLEASNTPVLEIAELSSK------ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENY 150 (275)
T ss_dssp HHHHHTCCEEEESSSCSS------SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCEEEEeeccCC------CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHHHHHcC
Confidence 344568999987543221 233446667777788888998888999999998543 345667888999999999
Q ss_pred ceeeeeeecCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHHcCCcccceE-EEEcC
Q 003054 87 TRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCV-WIMTD 151 (852)
Q Consensus 87 ~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~v-wi~~~ 151 (852)
+++.....+..+.+..+-...+.++.+. .+++|+. .+...+..++++++++|+..++-+ .++-+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d 217 (275)
T 3d8u_A 151 LTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALVC-SHEEIAIGALFECHRRVLKVPTDIAIICLE 217 (275)
T ss_dssp CCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEESS
T ss_pred CCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCEEEE-cCcHHHHHHHHHHHHcCCCCCCceEEEecC
Confidence 8654332222222334444555555543 4777764 456678899999999998755433 44433
No 92
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=96.50 E-value=0.017 Score=61.01 Aligned_cols=136 Identities=11% Similarity=0.039 Sum_probs=90.8
Q ss_pred HhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHc--CCcEEEEEEEe--CCcccccHHHHHHHHH
Q 003054 8 QLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAF--GWREAVPIYVD--NQYGEEMIPSLTDALQ 83 (852)
Q Consensus 8 ~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~--gw~~vaii~~d--~~~G~~~~~~l~~~l~ 83 (852)
..+.+.++|+|......+. .+.+..+..++...++.+++++.+. |.++|++|..+ +.......+.|+++++
T Consensus 76 ~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~ 150 (313)
T 2h3h_A 76 KKALEMGIPVVTLDTDSPD-----SGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIK 150 (313)
T ss_dssp HHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCeEEEeCCCCCC-----cceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHHHhc
Confidence 4445689999987654321 1234445677777888888988766 99999999854 3455677889999999
Q ss_pred hCCceeeeeeecCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCc
Q 003054 84 AIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDG 152 (852)
Q Consensus 84 ~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~ 152 (852)
+.|+++....... .+..+-...+.++.+. .+++|+.. +...+..++++++++|. +.+...++.+.
T Consensus 151 ~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~g~~~al~~~G~-p~dv~vvg~d~ 217 (313)
T 2h3h_A 151 DSEIEIVDILNDE--EDGARAVSLAEAALNAHPDLDAFFGV-YAYNGPAQALVVKNAGK-VGKVKIVCFDT 217 (313)
T ss_dssp TSSCEEEEEEECS--SCHHHHHHHHHHHHHHCTTCCEEEEC-STTHHHHHHHHHHHTTC-TTTSEEEEECC
T ss_pred CCCCEEEEeecCC--CCHHHHHHHHHHHHHHCcCceEEEEc-CCCccHHHHHHHHHcCC-CCCeEEEEeCC
Confidence 9999876433222 2344555566666554 45777654 45578889999999994 33344444443
No 93
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=96.44 E-value=0.0089 Score=62.31 Aligned_cols=135 Identities=11% Similarity=-0.011 Sum_probs=89.1
Q ss_pred cCC-CCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeC--CcccccHHHHHHHHHhCC
Q 003054 10 GNK-SQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDN--QYGEEMIPSLTDALQAID 86 (852)
Q Consensus 10 ~~~-~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~--~~G~~~~~~l~~~l~~~g 86 (852)
+.+ .++|+|......+. +.+..+..++...+..+++++.+.|.+++++|..+. ..+....+.|.+++++.|
T Consensus 96 l~~~~~iPvV~~~~~~~~------~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g 169 (296)
T 3brq_A 96 IIDAHSQPIMVLNRRLRK------NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHG 169 (296)
T ss_dssp HHHTCSSCEEEESCCCSS------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCEEEEccccCC------CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHHHHHHHHHHHHcC
Confidence 445 79999987543221 233445666667778888998778999999998543 356677889999999999
Q ss_pred ceeeeeeecCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHHcCCcccce-EEEEcC
Q 003054 87 TRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGC-VWIMTD 151 (852)
Q Consensus 87 ~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~-vwi~~~ 151 (852)
+++.....+..+.+..+-...+.++.+ .++++|++ .+...+..+++++++.|+..++- ..++.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d 236 (296)
T 3brq_A 170 IALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVA-SNDDMAIGAMKALHERGVAVPEQVSVIGFD 236 (296)
T ss_dssp CCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEEE-SSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred CCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCceEEEeec
Confidence 876543223222233444455666544 35788765 45667888999999999975543 344433
No 94
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=96.35 E-value=0.01 Score=62.95 Aligned_cols=105 Identities=18% Similarity=0.193 Sum_probs=61.9
Q ss_pred cCCHHHHHhcCCeEEEEe-CchHHH---HH-HhcCCCC-cceeecCCHhHHHHHhhcc----cccCceeEEEechhHHHH
Q 003054 570 ITDVKMLIKRGDNVGYQK-GSFVLG---IL-KQLGFDE-RKLVVYNSPEDCHELFQKG----SVNGGIAAAFDEIPYMKL 639 (852)
Q Consensus 570 i~sl~dL~~~~~~vg~~~-~s~~~~---~l-~~~~~~~-~~~~~~~~~~~~~~~l~~g----~~~~g~~a~~~~~~~~~~ 639 (852)
|++++|| ++||+.. |+.... .+ ++.+.+. .+++.+++..+..++|..| + ++|++.+......
T Consensus 112 i~s~~DL----K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~G~~~~~----vDa~~~ep~~~~~ 183 (321)
T 2x7q_A 112 VTDAKQL----KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNLKDGVEG----SDAFMWEYFTSKK 183 (321)
T ss_dssp CSSGGGC----CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTTCTTSCC----CSEEEEEHHHHHH
T ss_pred CCChHHc----ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHcCCCccc----eEEEEecCccchh
Confidence 8999999 6899975 654332 23 3455553 4566777888899999999 8 9998765444333
Q ss_pred HHhhcCCceEeeccccccc-ceEEEecCC----CC-----chhhHHHHHHhcccc
Q 003054 640 LIGQYCSKYAMIEPKFKTA-GFGFVFPLH----SP-----LVHDVSKAILNVTEG 684 (852)
Q Consensus 640 ~~~~~~~~~~~v~~~~~~~-~~~~~~~k~----sp-----l~~~in~~il~l~e~ 684 (852)
.... - .+..+.+..... ..++++++. .| ++..+.+++..+.++
T Consensus 184 ~~~~-g-~~~~~~d~~~~~~~~~l~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~ 236 (321)
T 2x7q_A 184 YYDN-H-EIKQIDQIYTPWSSWVVATSSDSLQAKSDVIKNFIDAVNQGIQYYNEH 236 (321)
T ss_dssp HHHT-T-SEEEEEEEECSSCSEEEEEEHHHHHHSHHHHHHHHHHHHHHHHHHHHC
T ss_pred hccC-C-ceEEccccCCCCceEEEEEcHHHHhhCHHHHHHHHHHHHHHHHHHHHC
Confidence 3322 1 244444332222 246666654 33 444455555555443
No 95
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=96.34 E-value=0.017 Score=61.47 Aligned_cols=138 Identities=12% Similarity=-0.030 Sum_probs=91.0
Q ss_pred HhcCCCCccEEeeecCCCCCCCCC-C-CceEeccCCchhHHHHHHHHHHH--cCCcEEEEEEEe--CCcccccHHHHHHH
Q 003054 8 QLGNKSQVPILSFSATSPSLTSIR-S-PYFFRGSLNDSSQAGAITAIIKA--FGWREAVPIYVD--NQYGEEMIPSLTDA 81 (852)
Q Consensus 8 ~i~~~~~vP~Is~~ats~~lt~~~-~-py~fR~~p~d~~~~~aia~~l~~--~gw~~vaii~~d--~~~G~~~~~~l~~~ 81 (852)
..+.+.++|+|......+..+... . +.+..+..++...+..+++++.+ .|.++|++|... ........+.|.++
T Consensus 82 ~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~a 161 (332)
T 2rjo_A 82 EACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIERKAGLDAA 161 (332)
T ss_dssp HHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHH
Confidence 344557899998865433211111 1 35666777888888888898866 699999999854 23456778889999
Q ss_pred HHhC-CceeeeeeecCCCCChHHHHHHHHHhhcC---CceEEEEEeChhhHHHHHHHHHHcCCcccceEEEE
Q 003054 82 LQAI-DTRVPYRSVISPLATDDQIEKELYKLFTM---QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 149 (852)
Q Consensus 82 l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~~---~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~ 149 (852)
+++. |+++..... .+.+..+-...+.++.+. .+++|+. .+...+..++++++++|+. .+...++
T Consensus 162 l~~~pgi~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~~aI~~-~nd~~A~g~~~al~~~G~~-~di~vvg 229 (332)
T 2rjo_A 162 LKKFPGIQLLDFQV--ADWNSQKAFPIMQAWMTRFNSKIKGVWA-ANDDMALGAIEALRAEGLA-GQIPVTG 229 (332)
T ss_dssp HHTCTTEEEEEEEE--CTTCHHHHHHHHHHHHHHHGGGEEEEEE-SSHHHHHHHHHHHHHTTCB-TTBCEEC
T ss_pred HHhCCCcEEEeecc--CCCCHHHHHHHHHHHHHhcCCCeeEEEE-CCCchHHHHHHHHHHcCCC-CCCEEEe
Confidence 9998 988754322 122344445556665544 5676654 5566788899999999986 3333443
No 96
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=96.32 E-value=0.014 Score=60.85 Aligned_cols=134 Identities=11% Similarity=0.145 Sum_probs=90.3
Q ss_pred HHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCC--cccccHHHHHHHHHh
Q 003054 7 IQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLTDALQA 84 (852)
Q Consensus 7 ~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~--~G~~~~~~l~~~l~~ 84 (852)
...+.+.++|+|......+.. +.+..+..++..-+..+++++.+.|-++++++..+.. ......+.|.+++++
T Consensus 85 ~~~l~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~ 159 (292)
T 3k4h_A 85 IQYLHEQNFPFVLIGKPYDRK-----DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMSDALKL 159 (292)
T ss_dssp HHHHHHTTCCEEEESCCSSCT-----TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCC-----CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHHHHHHHHHHHH
Confidence 344566799999875533221 1133456677778888889998889999999985433 345668889999999
Q ss_pred CCceeeeeeecCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHHcCCcccceE
Q 003054 85 IDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCV 146 (852)
Q Consensus 85 ~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~v 146 (852)
.|+.+.....+..+.+..+-...+.++.+. .+++|+ +.+...+..+++.++++|+..++-+
T Consensus 160 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di 222 (292)
T 3k4h_A 160 ADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIM-ATDDLIGLGVLSALSKKGFVVPKDV 222 (292)
T ss_dssp TTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred cCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEE-EcChHHHHHHHHHHHHhCCCCCCeE
Confidence 998764332222223344555566666654 567766 4566778899999999998755433
No 97
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=96.31 E-value=0.014 Score=60.73 Aligned_cols=127 Identities=14% Similarity=0.029 Sum_probs=83.4
Q ss_pred cCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEe--CCcccccHHHHHHHHHhCCc
Q 003054 10 GNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVD--NQYGEEMIPSLTDALQAIDT 87 (852)
Q Consensus 10 ~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d--~~~G~~~~~~l~~~l~~~g~ 87 (852)
+.+.++|+|......+. + +..+..++...+..+++++.+.|.++++++..+ ........+.|.+++++.|+
T Consensus 84 l~~~~iPvV~~~~~~~~------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~ 156 (290)
T 3clk_A 84 LQSSDVPYCFLSMGFDD------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYKKALKEANI 156 (290)
T ss_dssp HHCC--CEEEESCC--C------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTC
T ss_pred HHhCCCCEEEEcCCCCC------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHHHHHHcCC
Confidence 44578999887543221 2 334566777778888899888899999999853 34556778899999999998
Q ss_pred eeeeeeecCCCCChHHHHHHHHHhhc-CCceEEEEEeChhhHHHHHHHHHHcCCcccc
Q 003054 88 RVPYRSVISPLATDDQIEKELYKLFT-MQTRVFILHMLPSLGSRIFEKANEIGLMNKG 144 (852)
Q Consensus 88 ~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~ 144 (852)
++.....+..+.+..+-...+.++.+ .++++|+. .+...+..+++++++.|+..|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~ 213 (290)
T 3clk_A 157 AINQEWIKPGDYSYTSGEQAMKAFGKNTDLTGIIA-ASDMTAIGILNQASSFGIEVPK 213 (290)
T ss_dssp CCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTT
T ss_pred CCCcceEEcCCCChhhHHHHHHHHhccCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCC
Confidence 76432122222223334445555553 56787765 4566788899999999987554
No 98
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=96.28 E-value=0.013 Score=60.91 Aligned_cols=136 Identities=13% Similarity=0.155 Sum_probs=88.2
Q ss_pred hcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeC--CcccccHHHHHHHHHhCC
Q 003054 9 LGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDN--QYGEEMIPSLTDALQAID 86 (852)
Q Consensus 9 i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~--~~G~~~~~~l~~~l~~~g 86 (852)
.+.+.++|+|......+ +. .+..+..++...+..+++++.+.|.+++++|..+. .......+.|.+++++.|
T Consensus 82 ~l~~~~iPvV~~~~~~~---~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g 155 (287)
T 3bbl_A 82 FLLKQKFPFVAFGRSNP---DW---DFAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQGYLEAMQTAQ 155 (287)
T ss_dssp HHHHTTCCEEEESCCST---TC---CCCEEEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCEEEECCcCC---CC---CCCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHHHHHHcC
Confidence 34457899998755322 11 22335567777778888888777999999998543 245667788999999999
Q ss_pred ceeeeeeecCCCCChHHHHHHHHHhhc-C---CceEEEEEeChhhHHHHHHHHHHcCCcccc-eEEEEcC
Q 003054 87 TRVPYRSVISPLATDDQIEKELYKLFT-M---QTRVFILHMLPSLGSRIFEKANEIGLMNKG-CVWIMTD 151 (852)
Q Consensus 87 ~~v~~~~~~~~~~~~~d~~~~l~~l~~-~---~~~viv~~~~~~~~~~i~~~a~~~G~~~~~-~vwi~~~ 151 (852)
+++.....+..+.+..+-...+.++.+ . .+++|+. .+...+..+++++++.|+..|+ ...++-|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~di~vig~d 224 (287)
T 3bbl_A 156 LPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIMT-LNDTMAIGAMAAARERGLTIGTDLAIIGFD 224 (287)
T ss_dssp CCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEEEEES
T ss_pred CCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCCEEEEEEC
Confidence 876432122212223344455666654 3 5787765 4566788899999999997554 3344433
No 99
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=96.25 E-value=0.0068 Score=54.19 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=60.9
Q ss_pred HHHHhhhhheecccCCCCCCCcccccchhHHHHHHHhhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHhhhhccceeee
Q 003054 486 IFIGFVVWVLEHRVNEDFRGPAGQQVGTSFWFSFSTMVFSQ-RE-RVISNLARIVVIVWCFVVLILTQSYTASLTSLLTV 563 (852)
Q Consensus 486 i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~ 563 (852)
++.+.++|.+|+..+ ++...++.+++||++.++...| ++ .|.+..+|++.++|+++++.+.+...+.+++.++.
T Consensus 41 ~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~ 116 (122)
T 2ih3_C 41 LAGSYLAVLAERGAP----GAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 116 (122)
T ss_dssp HHHHHHHHHHHTTST----TCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhheeeecCC----CCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667788887542 2344679999999999999887 44 67899999999999999999999999999998864
Q ss_pred c
Q 003054 564 Q 564 (852)
Q Consensus 564 ~ 564 (852)
.
T Consensus 117 ~ 117 (122)
T 2ih3_C 117 R 117 (122)
T ss_dssp H
T ss_pred H
Confidence 3
No 100
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=96.17 E-value=0.031 Score=57.69 Aligned_cols=131 Identities=10% Similarity=0.026 Sum_probs=88.5
Q ss_pred hcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCC--cccccHHHHHHHHHhCC
Q 003054 9 LGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLTDALQAID 86 (852)
Q Consensus 9 i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~--~G~~~~~~l~~~l~~~g 86 (852)
.+.+.++|+|......+. +.+..+..++...+..+++++.+.|.++++++..+.. ......+.|.+++++.|
T Consensus 75 ~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g 148 (277)
T 3cs3_A 75 KFAERGHSIVVLDRTTEH------RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVSTRELTRFG 148 (277)
T ss_dssp HHHHTTCEEEESSSCCCS------TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCEEEEecCCCC------CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHHHHHHHcC
Confidence 344579999987543221 2344566677777788889888889999999985532 34566788999999999
Q ss_pred ceeeeeeecCCCCChHHHHHHHHHhhcC---CceEEEEEeChhhHHHHHHHHHHcCCcccceEEEE
Q 003054 87 TRVPYRSVISPLATDDQIEKELYKLFTM---QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 149 (852)
Q Consensus 87 ~~v~~~~~~~~~~~~~d~~~~l~~l~~~---~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~ 149 (852)
+++. . +..+.+..+-...+.++.+. .+++|+. .+...+..+++++++.|+..|+-+.|+
T Consensus 149 ~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vv 210 (277)
T 3cs3_A 149 IPYE-I--IQGDFTEPSGYAAAKKILSQPQTEPVDVFA-FNDEMAIGVYKYVAETNYQMGKDIRII 210 (277)
T ss_dssp CCEE-E--EECCSSHHHHHHHHHHHTTSCCCSSEEEEE-SSHHHHHHHHHHHTTSSCCBTTTEEEE
T ss_pred CCee-E--EeCCCChhHHHHHHHHHHhcCCCCCcEEEE-cChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 8765 2 11122344444556666554 5677654 566678889999999998765544443
No 101
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=96.16 E-value=0.014 Score=60.77 Aligned_cols=129 Identities=9% Similarity=-0.014 Sum_probs=84.7
Q ss_pred cCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeC--CcccccHHHHHHHHHhCCc
Q 003054 10 GNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDN--QYGEEMIPSLTDALQAIDT 87 (852)
Q Consensus 10 ~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~--~~G~~~~~~l~~~l~~~g~ 87 (852)
+.+.++|+|......+. +.+..+..++..-+..+++++.+.|.+++++|..+. .......+.+.+++++.|+
T Consensus 86 l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~ 159 (290)
T 2rgy_A 86 LHRMHPKMVFLNRAFDA------LPDASFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERLDGFFDELARHGI 159 (290)
T ss_dssp HHHHCSSEEEESSCCTT------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HhhcCCCEEEEccccCC------CCCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHHHHHHHHHHcCC
Confidence 34578999987553221 223345567777778888998888999999998543 3455667889999999997
Q ss_pred eeeeeeecCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHHcCCcccce
Q 003054 88 RVPYRSVISPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGC 145 (852)
Q Consensus 88 ~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~ 145 (852)
++.....+..+.+..+-...+.++.+ ..+++|+ +.+...+..+++++++.|+..|+-
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~d 218 (290)
T 2rgy_A 160 ARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLF-CANDTMAVSALARFQQLGISVPGD 218 (290)
T ss_dssp CGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTT
T ss_pred CCCcccEEecCCChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCc
Confidence 65432222112223333344445443 4678877 456677889999999999975543
No 102
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=96.15 E-value=0.027 Score=58.47 Aligned_cols=133 Identities=8% Similarity=0.072 Sum_probs=91.4
Q ss_pred HHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCC--cccccHHHHHHHHHh
Q 003054 7 IQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLTDALQA 84 (852)
Q Consensus 7 ~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~--~G~~~~~~l~~~l~~ 84 (852)
...+.+.++|+|......+. .. +-.+..++..-+..+++++.+.|-++++++..+.. ......+.+.+++++
T Consensus 82 ~~~l~~~~iPvV~i~~~~~~---~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~ 155 (288)
T 3gv0_A 82 VRFMTERNMPFVTHGRSDMG---IE---HAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRGIRD 155 (288)
T ss_dssp HHHHHHTTCCEEEESCCCSS---CC---CEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCEEEECCcCCC---CC---CcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHHHHHHHHH
Confidence 34455679999987653221 12 22355677778888999998889999999985433 356678899999999
Q ss_pred CCceeeeeeecCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHHcCCcccceE
Q 003054 85 IDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCV 146 (852)
Q Consensus 85 ~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~v 146 (852)
.|+.+.....+..+.+..+....+.++.+. .+++|+ +.+...+..+++.++++|+..|+-+
T Consensus 156 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di 218 (288)
T 3gv0_A 156 FGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGIV-SISGSSTIALVAGFEAAGVKIGEDV 218 (288)
T ss_dssp TTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEE-ESCHHHHHHHHHHHHTTTCCTTTSC
T ss_pred cCCCcchhheeccccchHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCCCce
Confidence 998875443333333344555666776654 467766 4566778889999999999755433
No 103
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=96.15 E-value=0.017 Score=61.43 Aligned_cols=137 Identities=13% Similarity=0.033 Sum_probs=89.3
Q ss_pred HhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeC---CcccccHHHHHHHHHh
Q 003054 8 QLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDN---QYGEEMIPSLTDALQA 84 (852)
Q Consensus 8 ~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~---~~G~~~~~~l~~~l~~ 84 (852)
..+.+.++|+|......+. +.+..+..++..-+..+++++...|.+++++|..+. .......+.|.+++++
T Consensus 133 ~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~ 206 (332)
T 2hsg_A 133 EELKKSPVPVVLAASIEST------NQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTE 206 (332)
T ss_dssp HHHTTSSSCEEEESCCCSC------TTSCEEEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHHHHHHHHT
T ss_pred HHHHhCCCCEEEEccccCC------CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHHHHHHHHH
Confidence 3445678999987553221 122334566677778888888888999999998543 3456778999999999
Q ss_pred CCceeeeeeecCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHHcCCcccce-EEEEcC
Q 003054 85 IDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGC-VWIMTD 151 (852)
Q Consensus 85 ~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~-vwi~~~ 151 (852)
.|+++.....+..+.+..+-...+.++.+. .+++|+. .+...+..+++++++.|+..|+- ..++-|
T Consensus 207 ~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~disvvg~D 275 (332)
T 2hsg_A 207 SGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFV-GTDEMALGVIHGAQDRGLNVPNDLEIIGFD 275 (332)
T ss_dssp TTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCHHHHCEEEEES
T ss_pred cCCCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEEE-CChHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 998754322221122233334455555544 5788774 56677889999999999865443 344433
No 104
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=96.11 E-value=0.026 Score=60.09 Aligned_cols=134 Identities=10% Similarity=0.011 Sum_probs=87.1
Q ss_pred CCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeC--CcccccHHHHHHHHHhCCce
Q 003054 11 NKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDN--QYGEEMIPSLTDALQAIDTR 88 (852)
Q Consensus 11 ~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~--~~G~~~~~~l~~~l~~~g~~ 88 (852)
.+.++|+|......+ + +.+..+..++..-+..+++++...|.+++++|..+. ..+....+.|.+++++.|++
T Consensus 139 ~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~ 212 (332)
T 2o20_A 139 KNSRTPVVLVGTIDG---D---KEIPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIE 212 (332)
T ss_dssp HHHCCCEEEESCCCT---T---SCSCEEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCC
T ss_pred HhCCCCEEEEccccC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCC
Confidence 456899998765322 1 122234566666778888888888999999998543 23566678899999999987
Q ss_pred eeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceE-EEEcC
Q 003054 89 VPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCV-WIMTD 151 (852)
Q Consensus 89 v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~v-wi~~~ 151 (852)
+.....+..+.+..+-...+.++.+..+++|+. .+...+..+++++++.|+..|+-+ .++-|
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disvig~D 275 (332)
T 2o20_A 213 FDENLVFEGNYSYEQGKALAERLLERGATSAVV-SHDTVAVGLLSAMMDKGVKVPEDFEIISGA 275 (332)
T ss_dssp CCGGGEECSCCSHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEEEESS
T ss_pred CChhhEEeCCCCHHHHHHHHHHHhccCCCEEEE-CChHHHHHHHHHHHHcCCCCccCEEEEEeC
Confidence 643222222222333333444443338898776 466678889999999999755433 44433
No 105
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=96.02 E-value=0.033 Score=61.44 Aligned_cols=103 Identities=15% Similarity=0.099 Sum_probs=63.0
Q ss_pred HHHHhcCCeEEEE-eCchHHH----HHHhcCCCCc---ceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcC
Q 003054 574 KMLIKRGDNVGYQ-KGSFVLG----ILKQLGFDER---KLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYC 645 (852)
Q Consensus 574 ~dL~~~~~~vg~~-~~s~~~~----~l~~~~~~~~---~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~ 645 (852)
+||. |++||+. .++.... +|++.+.++. +++.+ .+.+...+|..|+ ++|++...++......+..
T Consensus 151 ~dLk--Gk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~-~~~~~~~aL~~G~----vDa~~~~eP~~~~~~~~g~ 223 (417)
T 2g29_A 151 AKVT--DPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-PPAQMVANVKVNA----MESFCVGEPWPLQTVNQGV 223 (417)
T ss_dssp HTSS--SCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-CGGGHHHHHHTTS----CSEEEEETTHHHHHHHHTS
T ss_pred HhcC--CCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEEC-CHHHHHHHHHcCC----CCEEEeCCCHHHHHHHcCC
Confidence 6775 8999997 4665433 4455666543 45555 4578999999999 9999988777666655542
Q ss_pred CceEe-ecccccccc-eEEEecCC----CC-----chhhHHHHHHhccc
Q 003054 646 SKYAM-IEPKFKTAG-FGFVFPLH----SP-----LVHDVSKAILNVTE 683 (852)
Q Consensus 646 ~~~~~-v~~~~~~~~-~~~~~~k~----sp-----l~~~in~~il~l~e 683 (852)
..... ..+.....+ .++++++. .| ++..+.++...+.+
T Consensus 224 ~~~~~~~~~~~~~~p~~~l~~~~~~~~~~p~~~~~~~~A~~~A~~~~~~ 272 (417)
T 2g29_A 224 GYQALTTGQLWKDHPEKAFGMRADWVDQNPKAAKALLMAVMEAQQWCDQ 272 (417)
T ss_dssp CEEEEEGGGTBTTCBCEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEechhhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 22222 223222222 56777654 34 44456666666655
No 106
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=96.01 E-value=0.031 Score=58.17 Aligned_cols=134 Identities=13% Similarity=0.030 Sum_probs=88.8
Q ss_pred cCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeC---CcccccHHHHHHHHHhCC
Q 003054 10 GNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDN---QYGEEMIPSLTDALQAID 86 (852)
Q Consensus 10 ~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~---~~G~~~~~~l~~~l~~~g 86 (852)
+.+.++|+|......+ + +.+..+..++..-+..+++++.+.|.+++++|..+. .......+.|.+++++.|
T Consensus 91 l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g 164 (289)
T 2fep_A 91 FKRSPVPIVLAASVEE---Q---EETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEAN 164 (289)
T ss_dssp HHHSSSCEEEESCCCT---T---CCSCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTT
T ss_pred HHhcCCCEEEEccccC---C---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCccccccHHHHHHHHHHHHHHcC
Confidence 3467899998765332 1 122345567777788888998888999999998543 345677899999999999
Q ss_pred ceeeeeeecCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHHcCCcccce-EEEEc
Q 003054 87 TRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGC-VWIMT 150 (852)
Q Consensus 87 ~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~-vwi~~ 150 (852)
+++.....+..+.+..+-...+.++.+. .+++|+. .+...+..+++++++.|+..|+- ..++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~di~vvg~ 230 (289)
T 2fep_A 165 LPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILS-ATDEMALGIIHAAQDQGLSIPEDLDIIGF 230 (289)
T ss_dssp CCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred CCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEEEEE
Confidence 8764322222122234444556666543 5677664 56667889999999999875543 34433
No 107
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=96.00 E-value=0.046 Score=56.58 Aligned_cols=135 Identities=9% Similarity=-0.017 Sum_probs=88.4
Q ss_pred HhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHH-cC-CcEEEEEEEeC--CcccccHHHHHHHHH
Q 003054 8 QLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKA-FG-WREAVPIYVDN--QYGEEMIPSLTDALQ 83 (852)
Q Consensus 8 ~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~-~g-w~~vaii~~d~--~~G~~~~~~l~~~l~ 83 (852)
..+.+.++|+|......+. .+.+..+..++...++.+++++.+ +| .++++++..+. .......+.|.++++
T Consensus 84 ~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~gf~~~l~ 158 (289)
T 3brs_A 84 KEIKDAGIKLIVIDSGMKQ-----DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIGLS 158 (289)
T ss_dssp TTTGGGTCEEEEESSCCSS-----CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHHHG
T ss_pred HHHHHCCCcEEEECCCCCC-----CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHH
Confidence 3445678999987553221 123455677778888888898766 47 99999998542 345667888999999
Q ss_pred hCCceeeeeeecCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcC
Q 003054 84 AIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTD 151 (852)
Q Consensus 84 ~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~ 151 (852)
+.|..+.... ..+.+..+-...+.++.+. .+++|+. .+...+..++++++++|+. .+...++.+
T Consensus 159 ~~g~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~-~di~vvg~d 224 (289)
T 3brs_A 159 DDSNKIEAIY--YCDSNYDKAYDGTVELLTKYPDISVMVG-LNQYSATGAARAIKDMSLE-AKVKLVCID 224 (289)
T ss_dssp GGGGGEEEEE--ECTTCHHHHHHHHHHHHHHCTTEEEEEE-SSHHHHHHHHHHHHHTTCT-TTSEEEEEE
T ss_pred hCCCcEEeee--cCCCCHHHHHHHHHHHHHhCCCceEEEE-CCCcchHHHHHHHHhcCCC-CCEEEEEEC
Confidence 9887643322 1222344445556665543 3666654 4566788899999999986 334444443
No 108
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=95.87 E-value=0.034 Score=57.08 Aligned_cols=138 Identities=11% Similarity=0.045 Sum_probs=91.0
Q ss_pred HHHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHc----CCcEEEEEEEe--CCcccccHHHHH
Q 003054 6 IIQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAF----GWREAVPIYVD--NQYGEEMIPSLT 79 (852)
Q Consensus 6 v~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~----gw~~vaii~~d--~~~G~~~~~~l~ 79 (852)
....+.+.++|+|......+. .+++..+..++...++.+++++.+. |.++++++..+ ........+.|.
T Consensus 76 ~~~~~~~~~ipvV~~~~~~~~-----~~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 150 (276)
T 3ksm_A 76 SVAQYRARNIPVLVVDSDLAG-----DAHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQGFL 150 (276)
T ss_dssp HHHHHHHTTCCEEEESSCCSS-----SCSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCcEEEEecCCCC-----CCcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHHHHH
Confidence 344566779999998654321 1233445677888888899988776 89999999843 334567788999
Q ss_pred HHHHhC-CceeeeeeecCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCc
Q 003054 80 DALQAI-DTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDG 152 (852)
Q Consensus 80 ~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~ 152 (852)
+++++. |+++.... ..+.+..+-...+.++.+. .+++|+. .+...+..++++++++|+ +.+...++.+.
T Consensus 151 ~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~-p~di~vig~d~ 222 (276)
T 3ksm_A 151 DVLRKHDKIRIIAAP--YAGDDRGAARSEMLRLLKETPTIDGLFT-PNESTTIGALVAIRQSGM-SKQFGFIGFDQ 222 (276)
T ss_dssp HHHTTCTTEEEEECC--BCCSSHHHHHHHHHHHHHHCSCCCEEEC-CSHHHHHHHHHHHHHTTC-TTSSEEEEESC
T ss_pred HHHHhCCCcEEEEEe--cCCCcHHHHHHHHHHHHHhCCCceEEEE-CCchhhhHHHHHHHHcCC-CCCeEEEEeCC
Confidence 999988 88876322 2223344455556665544 4566553 456678889999999998 44444554443
No 109
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=95.87 E-value=0.037 Score=57.92 Aligned_cols=132 Identities=10% Similarity=0.041 Sum_probs=86.7
Q ss_pred HHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHH------------cCCcEEEEEEEe--CCccc
Q 003054 7 IQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKA------------FGWREAVPIYVD--NQYGE 72 (852)
Q Consensus 7 ~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~------------~gw~~vaii~~d--~~~G~ 72 (852)
...+.+.++|+|......+...-..++.+..+..++...++.+++++.. .|-+++++|... .....
T Consensus 77 ~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~~~~ 156 (309)
T 2fvy_A 77 IEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE 156 (309)
T ss_dssp HHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCHHHH
T ss_pred HHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCccHH
Confidence 3445568999998765322110011345666777888888888888765 788899999853 33456
Q ss_pred ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcC----CceEEEEEeChhhHHHHHHHHHHcC
Q 003054 73 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM----QTRVFILHMLPSLGSRIFEKANEIG 139 (852)
Q Consensus 73 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~----~~~viv~~~~~~~~~~i~~~a~~~G 139 (852)
...+.|.+++++.|+++.....+..+.+..+-...+.++.+. .+++|+. .+...+..++++++++|
T Consensus 157 ~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~g 226 (309)
T 2fvy_A 157 ARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA-NNDAMAMGAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEE-SSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCceEEEEEecCCCCHHHHHHHHHHHHHhCCCCCccEEEE-CCchhHHHHHHHHHHcC
Confidence 678889999999998764332222222334444555665543 5777665 55667888999999998
No 110
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=95.87 E-value=0.013 Score=54.63 Aligned_cols=76 Identities=13% Similarity=0.124 Sum_probs=61.3
Q ss_pred HHHhhhhheecccCCCCCCCcccccchhHHHHHHHhhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHhhhhccceeeec
Q 003054 487 FIGFVVWVLEHRVNEDFRGPAGQQVGTSFWFSFSTMVFSQ-RE-RVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQ 564 (852)
Q Consensus 487 ~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~ 564 (852)
+.+.++|.+|+..+ ++...++.+++||++.++...| ++ .|.+..+|++.++|+++++.+.+..++.+++.++..
T Consensus 65 ~~a~~~~~~E~~~~----~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~ 140 (155)
T 2a9h_A 65 AGSYLAVLAERGAP----GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGR 140 (155)
T ss_dssp HHHHHHHHHHTTSS----CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCC----CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778886542 2334578999999999999887 44 678999999999999999999999999999998765
Q ss_pred cc
Q 003054 565 QL 566 (852)
Q Consensus 565 ~~ 566 (852)
..
T Consensus 141 ~~ 142 (155)
T 2a9h_A 141 EQ 142 (155)
T ss_dssp CC
T ss_pred HH
Confidence 43
No 111
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=95.82 E-value=0.019 Score=52.32 Aligned_cols=56 Identities=11% Similarity=0.293 Sum_probs=49.8
Q ss_pred cccchhHHHHHHHhhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHhhhhccceeeec
Q 003054 509 QQVGTSFWFSFSTMVFSQ-RE-RVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQ 564 (852)
Q Consensus 509 ~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~ 564 (852)
.++.+++||++.++...| ++ .|.+..+|++.++|+++++.+.+...+.+++.+...
T Consensus 42 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 99 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCK 99 (137)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999877 44 689999999999999999999999999999988653
No 112
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=95.80 E-value=0.059 Score=56.19 Aligned_cols=136 Identities=7% Similarity=-0.059 Sum_probs=86.4
Q ss_pred HhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHH-cCCc-EEEEEEEe--CCcccccHHHHHHHHH
Q 003054 8 QLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKA-FGWR-EAVPIYVD--NQYGEEMIPSLTDALQ 83 (852)
Q Consensus 8 ~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~-~gw~-~vaii~~d--~~~G~~~~~~l~~~l~ 83 (852)
..+.+.++|+|...... .. .+.+..+..++...+..+++++.+ .|.+ +++++..+ ........+.|.++++
T Consensus 80 ~~~~~~~ipvV~~~~~~--~~---~~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~gf~~~l~ 154 (303)
T 3d02_A 80 KKARDAGIVVLTNESPG--QP---SANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADLLVKYQK 154 (303)
T ss_dssp HHHHHTTCEEEEESCTT--CT---TCSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCeEEEEecCC--CC---CCceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHHHHHHHH
Confidence 44556799999976531 11 234455667777788888888766 8987 99988743 3344567788999998
Q ss_pred hCC--ceeeeeeecCCCCChHHHHHHHHHhhcCC--ceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcC
Q 003054 84 AID--TRVPYRSVISPLATDDQIEKELYKLFTMQ--TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTD 151 (852)
Q Consensus 84 ~~g--~~v~~~~~~~~~~~~~d~~~~l~~l~~~~--~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~ 151 (852)
+.+ +++... .+....+..+....+.++.+.. +++|+. .+...+..++++++++|+. .+...++.+
T Consensus 155 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~-~dv~vig~d 223 (303)
T 3d02_A 155 EHYPDMHEVTR-RMPVAESVDDSRRTTLDLMKTYPDLKAVVS-FGSNGPIGAGRAVKEKRAK-NKVAVYGMM 223 (303)
T ss_dssp HHCTTEEESSS-CBSCTTCHHHHHHHHHHHHHHCTTEEEEEE-SSTTHHHHHHHHHHHTTCT-TTCEEEECC
T ss_pred hhCCCCEEEEe-ecCCCCCHHHHHHHHHHHHHhCCCCCEEEE-eCCcchhHHHHHHHhcCCC-CCeEEEEeC
Confidence 764 554322 1121223445556666665544 465554 4556788899999999986 334444443
No 113
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=95.77 E-value=0.019 Score=52.65 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=59.0
Q ss_pred HHHhhhhheecccCCCCCCCcccccchhHHHHHHHhhhcc-c-cccccchhhHHHHHHHHHHHHHHHHhhhhccceeee
Q 003054 487 FIGFVVWVLEHRVNEDFRGPAGQQVGTSFWFSFSTMVFSQ-R-ERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTV 563 (852)
Q Consensus 487 ~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~ 563 (852)
+.+.++|.+|+.. .++...++.+++||++.++...| + ..|.+..+|++.++|+++++.+.+...+.+++.+..
T Consensus 21 ~~a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 21 AGSYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp HHHHHHHHTTSSC----TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHHHhcCC----CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777644 22344678999999999999877 3 467899999999999999999999999999998843
No 114
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=95.76 E-value=0.044 Score=57.14 Aligned_cols=133 Identities=13% Similarity=0.089 Sum_probs=87.3
Q ss_pred HHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCC--cccccHHHHHHHHHh
Q 003054 7 IQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLTDALQA 84 (852)
Q Consensus 7 ~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~--~G~~~~~~l~~~l~~ 84 (852)
...+.+.++|+|......+... . .+..+..++..-+..++++|.+.|.++++++..... ......+.+.+++++
T Consensus 84 ~~~l~~~~iPvV~i~~~~~~~~-~---~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~ 159 (295)
T 3hcw_A 84 KQMLIDESMPFIVIGKPTSDID-H---QFTHIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDRIQGFETVASQ 159 (295)
T ss_dssp HHHHHHTTCCEEEESCCCSSGG-G---GSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEECCCCcccc-C---CceEEecCcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHHHHHHHHHHHH
Confidence 3445567899998755332210 0 122345566777788888887889999999985433 356678899999999
Q ss_pred CCceeeeeeecCCCCChHHHHHHHHHhhcC-----CceEEEEEeChhhHHHHHHHHHHcCCcccceEE
Q 003054 85 IDTRVPYRSVISPLATDDQIEKELYKLFTM-----QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVW 147 (852)
Q Consensus 85 ~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~-----~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vw 147 (852)
.|+.+... ... .+..+-...+.++.+. .+++|+ +.+...+..++++++++|+..|+-+-
T Consensus 160 ~g~~~~~~-~~~--~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~ 223 (295)
T 3hcw_A 160 FNLDYQII-ETS--NEREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAILSVLYELNIEIPKDVM 223 (295)
T ss_dssp TTCEEEEE-EEC--SCHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHHHHHHHHTTCCTTTTEE
T ss_pred cCCCeeEE-ecc--CCHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceE
Confidence 99887522 112 2334444444444332 678866 46667789999999999997654443
No 115
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=95.72 E-value=0.029 Score=58.61 Aligned_cols=133 Identities=11% Similarity=0.080 Sum_probs=90.4
Q ss_pred HHHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcC--CcEEEEEEEeC--CcccccHHHHHHH
Q 003054 6 IIQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFG--WREAVPIYVDN--QYGEEMIPSLTDA 81 (852)
Q Consensus 6 v~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~g--w~~vaii~~d~--~~G~~~~~~l~~~ 81 (852)
....+.+.++|+|......+... ..+.+..+..++...++.+++++.+.| -++++++..+. .......+.|+++
T Consensus 78 ~~~~~~~~giPvV~~~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~ 155 (297)
T 3rot_A 78 SLQRANKLNIPVIAVDTRPKDKT--KNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIKTI 155 (297)
T ss_dssp HHHHHHHHTCCEEEESCCCSCTT--TSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEcCCCcccc--ccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHH
Confidence 34445667999999866443321 123455567788888889999987777 89999997443 3445678899999
Q ss_pred HHhCCceeeeeeecCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHHcCCcccc
Q 003054 82 LQAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKG 144 (852)
Q Consensus 82 l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~i~~~a~~~G~~~~~ 144 (852)
+++.|+++.... . ......-...+.++.+. .+++|+ +.+...+..++++++++|+..|+
T Consensus 156 l~~~g~~~~~~~--~-~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~ 216 (297)
T 3rot_A 156 LQDKGIFFEELD--V-GTDPNQVQSRVKSYFKIHPETNIIF-CLTSQALDPLGQMLLHPDRYDFN 216 (297)
T ss_dssp HHHTTCEEEEEE--C-CSCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHSHHHHTCC
T ss_pred HHhcCCeEEEee--c-CCChHHHHHHHHHHHHhCCCCCEEE-EcCCcchHHHHHHHHhcCCccCC
Confidence 999999987554 1 12344445556664443 456655 45667788899999999986543
No 116
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=95.70 E-value=0.051 Score=56.34 Aligned_cols=125 Identities=6% Similarity=-0.012 Sum_probs=81.0
Q ss_pred HhcCCCCccEEeeecCCCCCCCCCCCceEe-ccCCchhHHHHHHHHHHHc------CCcE--EEEEEEe--CCcccccHH
Q 003054 8 QLGNKSQVPILSFSATSPSLTSIRSPYFFR-GSLNDSSQAGAITAIIKAF------GWRE--AVPIYVD--NQYGEEMIP 76 (852)
Q Consensus 8 ~i~~~~~vP~Is~~ats~~lt~~~~py~fR-~~p~d~~~~~aia~~l~~~------gw~~--vaii~~d--~~~G~~~~~ 76 (852)
..+.+.++|+|......+. .+++.. +..++...++.+++++.+. |.++ ++++..+ ........+
T Consensus 77 ~~~~~~~iPvV~~~~~~~~-----~~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~~R~~ 151 (290)
T 2fn9_A 77 KRAKEAGIPVFCVDRGINA-----RGLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSN 151 (290)
T ss_dssp HHHHHTTCCEEEESSCCSC-----SSSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHHHHHH
T ss_pred HHHHHCCCeEEEEecCCCC-----CCceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHHHHHH
Confidence 4445679999987653321 122233 5667777788888988666 8899 6666533 234566788
Q ss_pred HHHHHHHhC-CceeeeeeecCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHHcCC
Q 003054 77 SLTDALQAI-DTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGL 140 (852)
Q Consensus 77 ~l~~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~i~~~a~~~G~ 140 (852)
.|.+++++. |+++..... .+.+..+-...+.++.+ ..+++|+. .+...+..+++++++.|+
T Consensus 152 gf~~~l~~~~g~~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~ai~~-~~d~~a~g~~~al~~~g~ 215 (290)
T 2fn9_A 152 GFHSVVDQYPEFKMVAQQS--AEFDRDTAYKVTEQILQAHPEIKAIWC-GNDAMALGAMKACEAAGR 215 (290)
T ss_dssp HHHHHHTTSTTEEEEEEEE--CTTCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCEEEEecc--CCCCHHHHHHHHHHHHHhCCCCcEEEE-CCchHHHHHHHHHHHCCC
Confidence 899999998 887653221 11223334445555543 35787764 456678889999999998
No 117
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=95.70 E-value=0.024 Score=60.25 Aligned_cols=130 Identities=11% Similarity=0.050 Sum_probs=84.2
Q ss_pred cCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCC--cccccHHHHHHHHHhCCc
Q 003054 10 GNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLTDALQAIDT 87 (852)
Q Consensus 10 ~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~--~G~~~~~~l~~~l~~~g~ 87 (852)
+...++|+|......+. .. ..+..++..-+..+++++...|.+++++|..+.. .+....+.|.+++++.|+
T Consensus 131 l~~~~iPvV~~~~~~~~----~~---~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~ 203 (330)
T 3ctp_A 131 YANIDIPVVAFENHILD----NI---ITISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFLDGARAKDL 203 (330)
T ss_dssp GTTCCSCEEEESSCCCT----TS---CEEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHhcCCCEEEEeccCCC----CC---CEEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHHHHHHHHcCC
Confidence 34678999887553321 22 2345566667778888888889999999985533 456678889999999998
Q ss_pred eeeeeeecCCCCChHHHHHHHHHhhc-CCceEEEEEeChhhHHHHHHHHHHcCCcccceEEE
Q 003054 88 RVPYRSVISPLATDDQIEKELYKLFT-MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWI 148 (852)
Q Consensus 88 ~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi 148 (852)
++. ...+..+.+..+-...+.++.+ ..+++|+. .+...+..+++++++.|+..|+-+-|
T Consensus 204 ~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disv 263 (330)
T 3ctp_A 204 EID-FIEFQHDFQVKMLEEDINSMKDIVNYDGIFV-FNDIAAATVMRALKKRGVSIPQEVQI 263 (330)
T ss_dssp CCE-EEECSSSCCGGGGGCCCTTGGGGGGSSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred Ccc-eeEEcCCCCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEE
Confidence 765 3332212122222223334433 36788775 45667888999999999976544433
No 118
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=95.68 E-value=0.031 Score=59.63 Aligned_cols=139 Identities=12% Similarity=0.027 Sum_probs=92.0
Q ss_pred HHHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEe--CCcccccHHHHHHHHH
Q 003054 6 IIQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVD--NQYGEEMIPSLTDALQ 83 (852)
Q Consensus 6 v~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d--~~~G~~~~~~l~~~l~ 83 (852)
+...+.+.++|+|......+. +.+..+..++..-+..+++++...|.+++++|... ........+.|.++++
T Consensus 135 ~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~ 208 (338)
T 3dbi_A 135 IDDIIDAHSQPIMVLNRRLRK------NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALA 208 (338)
T ss_dssp HHHHHHHCSSCEEEESSCCSS------SGGGEECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCEEEEcCCCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHH
Confidence 455667788999987553322 11223566777778888889888899999999753 3345667888999999
Q ss_pred hCCceeeeeeecCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHHcCCcccceE-EEEcC
Q 003054 84 AIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCV-WIMTD 151 (852)
Q Consensus 84 ~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~v-wi~~~ 151 (852)
+.|+++.....+..+.+..+-...+.++.+ ..+++|+. .+...+..++++++++|+..|+-+ .++-|
T Consensus 209 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~vvg~D 278 (338)
T 3dbi_A 209 QHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVA-SNDDMAIGAMKALHERGVAVPEQVSVIGFD 278 (338)
T ss_dssp HTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEEE-CChHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 999876433323222233444445555543 45677664 566678899999999999765443 44433
No 119
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=95.68 E-value=0.029 Score=58.32 Aligned_cols=139 Identities=13% Similarity=0.058 Sum_probs=88.7
Q ss_pred HHHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeC--CcccccHHHHHHHHH
Q 003054 6 IIQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDN--QYGEEMIPSLTDALQ 83 (852)
Q Consensus 6 v~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~--~~G~~~~~~l~~~l~ 83 (852)
....+.+.++|+|......+. +.+..+..++...+..+++++.+.|-++++++.... .......+.|.++++
T Consensus 79 ~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~ 152 (291)
T 3egc_A 79 YLRTELPKTFPIVAVNRELRI------PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMS 152 (291)
T ss_dssp HHHHSSCTTSCEEEESSCCCC------TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHhhccCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHHHHH
Confidence 345567789999987654321 223445667778888889999888999999998543 345667888999999
Q ss_pred hCCceeeeeeecCCCCChHHHHHHHHHhh--cCCceEEEEEeChhhHHHHHHHHHHcCCcccceE-EEEcC
Q 003054 84 AIDTRVPYRSVISPLATDDQIEKELYKLF--TMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCV-WIMTD 151 (852)
Q Consensus 84 ~~g~~v~~~~~~~~~~~~~d~~~~l~~l~--~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~v-wi~~~ 151 (852)
+.|+++........+.+..+-...+.++. ...+++|+ +.+...+..++++++++|+..++-+ .++-|
T Consensus 153 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 222 (291)
T 3egc_A 153 AAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALL-TSSHRITEGAMQALNVLGLRYGPDVEIVSFD 222 (291)
T ss_dssp HTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEE-ESSHHHHHHHHHHHHHHTCCBTTTBEEEEES
T ss_pred HcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEEEec
Confidence 99987543222111111122223344443 24577766 4666778899999999999755433 44333
No 120
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=95.68 E-value=0.031 Score=57.73 Aligned_cols=132 Identities=14% Similarity=0.047 Sum_probs=88.1
Q ss_pred CCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeee
Q 003054 13 SQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYR 92 (852)
Q Consensus 13 ~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~ 92 (852)
.++|+|......+ .+...+ .+..++...++.+++++.+.|.++++++..+........+.|.+++++.|..+...
T Consensus 78 ~~iPvV~~~~~~~--~~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~ 152 (280)
T 3gyb_A 78 SLPPFVIAGTRIT--QASTHD---SVANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSN 152 (280)
T ss_dssp -CCCEEEESCCCS--SSCSTT---EEEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEEC
T ss_pred cCCCEEEECCCCC--CCCCCC---EEEechHHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCcc
Confidence 7899998765442 112223 34667777888889999888999999999654446677888999999999876543
Q ss_pred eecCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHHcCCcccceE-EEEcC
Q 003054 93 SVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCV-WIMTD 151 (852)
Q Consensus 93 ~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~v-wi~~~ 151 (852)
. +..+.+..+-...+.++.+. .+++|+. .+...+..++++++++|+..++-+ .++-+
T Consensus 153 ~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d 212 (280)
T 3gyb_A 153 D-YLGPAVEHAGYTETLALLKEHPEVTAIFS-SNDITAIGALGAARELGLRVPEDLSIIGYD 212 (280)
T ss_dssp C-CCSCCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred c-ccCCCCHHHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCeeEEEEEC
Confidence 3 32223344444455555443 4677654 566778899999999999755433 44433
No 121
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=95.66 E-value=0.061 Score=56.21 Aligned_cols=139 Identities=14% Similarity=0.045 Sum_probs=89.8
Q ss_pred HHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHc--CCcEEEEEEEeC-CcccccHHHHHHHHH
Q 003054 7 IQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAF--GWREAVPIYVDN-QYGEEMIPSLTDALQ 83 (852)
Q Consensus 7 ~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~--gw~~vaii~~d~-~~G~~~~~~l~~~l~ 83 (852)
...+.+.++|+|......+. .+.+..+..++...+..+++++... |-++++++.... .......+.|.++++
T Consensus 79 ~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~~~l~ 153 (305)
T 3g1w_A 79 INKAVDAGIPIVLFDSGAPD-----SHAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFKETLE 153 (305)
T ss_dssp HHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEEECCCCCC-----CceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHHHHHH
Confidence 34455679999987654322 1223445677788888889888777 999999998432 234456778999999
Q ss_pred hCCceeeeeeecCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCc
Q 003054 84 AIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDG 152 (852)
Q Consensus 84 ~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~ 152 (852)
+.|..+.....+..+.+..+-...+.++.+. ++++|+ +.+...+..++++++++|+. .+...++.|.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~-~di~vig~d~ 222 (305)
T 3g1w_A 154 AEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIF-ATEANGGVGVGDAVRLESRA-GEIQIISFDT 222 (305)
T ss_dssp HHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEEESC
T ss_pred hhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEE-ECCCcchhhHHHHHHhcCCC-CCeEEEEeCC
Confidence 8876554333322223344444555555544 456554 45666788999999999986 4445555544
No 122
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=95.66 E-value=0.049 Score=58.12 Aligned_cols=129 Identities=12% Similarity=0.055 Sum_probs=84.9
Q ss_pred CCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCC--cccccHHHHHHHHHhCCcee
Q 003054 12 KSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLTDALQAIDTRV 89 (852)
Q Consensus 12 ~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~--~G~~~~~~l~~~l~~~g~~v 89 (852)
..++|+|......+. .++...+..++..-+..++++|.+.|.+++++|..... .+....+.|.+++++.|+.+
T Consensus 136 ~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~ 210 (340)
T 1qpz_A 136 YRHIPMVVMDWGEAK-----ADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKV 210 (340)
T ss_dssp TTTSCEEEEEESSCC-----CSSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred hCCCCEEEEecccCC-----CCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCC
Confidence 368999987653321 12223455666677788888887779999999975432 35667788999999999875
Q ss_pred eeeeecCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHHcCCcccceE
Q 003054 90 PYRSVISPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCV 146 (852)
Q Consensus 90 ~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~v 146 (852)
.....+..+.+..+-...+.++.+ ..+++|+. .+...+..+++++++.|+..|+-+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di 268 (340)
T 1qpz_A 211 PESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDV 268 (340)
T ss_dssp CGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred ChhheEeCCCCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCe
Confidence 432222222223333445555554 35787775 466678889999999999765433
No 123
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=95.64 E-value=0.044 Score=56.79 Aligned_cols=129 Identities=9% Similarity=0.102 Sum_probs=89.1
Q ss_pred CCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCC--cccccHHHHHHHHHhCCce
Q 003054 11 NKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLTDALQAIDTR 88 (852)
Q Consensus 11 ~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~--~G~~~~~~l~~~l~~~g~~ 88 (852)
...++|+|......+ .+-.+..++..-+..+++++.+.|-++++++..+.. ......+.|.+++++.|++
T Consensus 88 ~~~~iPvV~~~~~~~--------~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~ 159 (289)
T 3g85_A 88 ASLTLPIILFNRLSN--------KYSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKGFIETCHKNGIK 159 (289)
T ss_dssp CCCSSCEEEESCCCS--------SSEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCB
T ss_pred ccCCCCEEEECCCCC--------CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHHHHHHcCCC
Confidence 367899998865322 223456677788888999998889999999985433 3566788999999999987
Q ss_pred eeeeeecCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHHcCCcccceEEE
Q 003054 89 VPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWI 148 (852)
Q Consensus 89 v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi 148 (852)
+.....+..+.+.++-...+.++.+. .+++|+ +.+...+..++++++++|+..|+-+-|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 220 (289)
T 3g85_A 160 ISENHIIAAENSIHGGVDAAKKLMKLKNTPKALF-CNSDSIALGVISVLNKRQISIPDDIEI 220 (289)
T ss_dssp CCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred CChhheeccCCCHHHHHHHHHHHHcCCCCCcEEE-EcCCHHHHHHHHHHHHcCCCCCCceEE
Confidence 64322222223344455566666654 467766 456777889999999999976544433
No 124
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=95.64 E-value=0.083 Score=54.86 Aligned_cols=136 Identities=8% Similarity=-0.034 Sum_probs=88.8
Q ss_pred HhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCC--cccccHHHHHHHHHhC
Q 003054 8 QLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLTDALQAI 85 (852)
Q Consensus 8 ~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~--~G~~~~~~l~~~l~~~ 85 (852)
..+.+.++|+|......+. +.+..+..++...+..+++++...|.++++++..... ......+.|.+++++.
T Consensus 94 ~~~~~~~iPvV~~~~~~~~------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~ 167 (293)
T 2iks_A 94 QRWANDPFPIVALDRALDR------EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDD 167 (293)
T ss_dssp HTTTTSSSCEEEEESCCCT------TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCCCEEEECCccCc------CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHHHHHHHc
Confidence 4456678999987653221 1233455677777888889988889999999986532 3566778899999999
Q ss_pred CceeeeeeecCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHHcCCcccce-EEEEcCc
Q 003054 86 DTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGC-VWIMTDG 152 (852)
Q Consensus 86 g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~-vwi~~~~ 152 (852)
|.+..... ..+.+..+-...+.++.+. .+++|+. .+...+..+++++++.|+..|+- ..++-|.
T Consensus 168 g~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d~ 234 (293)
T 2iks_A 168 PREVHFLY--ANSYEREAAAQLFEKWLETHPMPQALFT-TSFALLQGVMDVTLRRDGKLPSDLAIATFGD 234 (293)
T ss_dssp CCCEEEEE--ESSSCHHHHHHHHHHHTTTSCCCSEEEE-SSHHHHHHHHHHHHHHHSSCCSSCEEEEESC
T ss_pred CCCccEEE--cCCCChhhHHHHHHHHHhcCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCceEEEEECC
Confidence 87433221 1112234444556666544 4677664 45667888999999999875543 3444433
No 125
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=95.56 E-value=0.062 Score=56.88 Aligned_cols=136 Identities=11% Similarity=0.107 Sum_probs=87.0
Q ss_pred HhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHc--CCcEEEEEEEeC--CcccccHHHHHHHHH
Q 003054 8 QLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAF--GWREAVPIYVDN--QYGEEMIPSLTDALQ 83 (852)
Q Consensus 8 ~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~--gw~~vaii~~d~--~~G~~~~~~l~~~l~ 83 (852)
..+.+.++|+|......+. .+++..+..++...+..+++++... |.++++++..+. .......+.|.++++
T Consensus 81 ~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~ 155 (325)
T 2x7x_A 81 EEAYQKGIPVILVDRKILS-----DKYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQGFMAAIS 155 (325)
T ss_dssp HHHHHTTCCEEEESSCCSS-----SCSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCeEEEeCCCCCC-----cceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHH
Confidence 3345679999987553221 1234455677777888888887664 999999998543 345666788999999
Q ss_pred hC-CceeeeeeecCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCc
Q 003054 84 AI-DTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDG 152 (852)
Q Consensus 84 ~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~ 152 (852)
+. |+++.... ..+.+..+-...+.++.+ ..+++|+. .+...+..+++++++.|+ +.+...++.|.
T Consensus 156 ~~pg~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~aI~~-~nd~~A~g~~~al~~~Gi-p~dv~vig~D~ 223 (325)
T 2x7x_A 156 KFPDIKLIDKA--DAAWERGPAEIEMDSMLRRHPKIDAVYA-HNDRIAPGAYQAAKMAGR-EKEMIFVGIDA 223 (325)
T ss_dssp TCTEEEEEEEE--ECTTSHHHHHHHHHHHHHHCSCCCEEEE-SSTTHHHHHHHHHHHTTC-TTSSEEEEEEC
T ss_pred hCCCCEEEeee--cCCCCHHHHHHHHHHHHHhCCCCCEEEE-CCCchHHHHHHHHHHcCC-CCCeEEEEECC
Confidence 98 88765322 112223333445555543 35777764 455678888999999996 33444444443
No 126
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=95.50 E-value=0.051 Score=56.30 Aligned_cols=126 Identities=15% Similarity=0.136 Sum_probs=83.2
Q ss_pred CCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeC--CcccccHHHHHHHHHhCCceee
Q 003054 13 SQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDN--QYGEEMIPSLTDALQAIDTRVP 90 (852)
Q Consensus 13 ~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~--~~G~~~~~~l~~~l~~~g~~v~ 90 (852)
.++|+|......+. +.+..+..++..-+..+++++.+.|-+++++|..+. .......+.|.+++++.|+++.
T Consensus 85 ~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 158 (285)
T 3c3k_A 85 GAFPWVQCAEYDPL------STVSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYS 158 (285)
T ss_dssp TTSSEEEESSCCTT------SSSCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCC
T ss_pred cCCCEEEEccccCC------CCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCce
Confidence 79999987653321 123334566667778888888788999999998543 2456667889999999998754
Q ss_pred eeeecCCCCChHHHHHHHHH--hhcC--CceEEEEEeChhhHHHHHHHHHHcCCcccceEEE
Q 003054 91 YRSVISPLATDDQIEKELYK--LFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWI 148 (852)
Q Consensus 91 ~~~~~~~~~~~~d~~~~l~~--l~~~--~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi 148 (852)
...-.. +..+-...+.+ +.+. .+++|+. .+...+..+++++++.|+..|+-+-|
T Consensus 159 -~~~~~~--~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di~v 216 (285)
T 3c3k_A 159 -RISYAE--NLDYMAGKLATFSLLKSAVKPDAIFA-ISDVLAAGAIQALTESGLSIPQDVAV 216 (285)
T ss_dssp -EEEECS--SSSHHHHHHHHHHHHSSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred -EeecCC--ChHHHHHHHHHHHHHcCCCCCeEEEE-CCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 111111 12233345555 5443 5777664 55667888999999999976544433
No 127
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=95.44 E-value=0.11 Score=55.49 Aligned_cols=145 Identities=10% Similarity=0.008 Sum_probs=90.8
Q ss_pred HHHHhcCCCCccEEeeecCCCCCCC-------CCC-CceEeccCCchhHHHHHHHHHHHcC------C-cEEEEEEEeC-
Q 003054 5 FIIQLGNKSQVPILSFSATSPSLTS-------IRS-PYFFRGSLNDSSQAGAITAIIKAFG------W-REAVPIYVDN- 68 (852)
Q Consensus 5 ~v~~i~~~~~vP~Is~~ats~~lt~-------~~~-py~fR~~p~d~~~~~aia~~l~~~g------w-~~vaii~~d~- 68 (852)
.+...+.+.+||+|......+.... ..+ .++..+..++...+..+++++.+.| - ++++++..+.
T Consensus 77 ~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~ 156 (350)
T 3h75_A 77 QILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKV 156 (350)
T ss_dssp HHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTT
T ss_pred HHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCC
Confidence 3455677889999998775544321 011 1356677778888888888886655 4 8999998442
Q ss_pred -CcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCc--eEEEEEeChhhHHHHHHHHHHcCCcccc-
Q 003054 69 -QYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQT--RVFILHMLPSLGSRIFEKANEIGLMNKG- 144 (852)
Q Consensus 69 -~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~--~viv~~~~~~~~~~i~~~a~~~G~~~~~- 144 (852)
.......+.|.+++++.|. +.....+..+.+.+.-...+.++.+..+ ++| ++++...+..++++++++|+..++
T Consensus 157 ~~~~~~R~~Gf~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~aI-~~~~d~~a~g~~~al~~~G~~vP~d 234 (350)
T 3h75_A 157 TPAAQLRERGLRRALAEHPQ-VHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLV-WSANDEMALGAMQAARELGRKPGTD 234 (350)
T ss_dssp SHHHHHHHHHHHHHHHHCTT-EEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEE-EESSHHHHHHHHHHHHHTTCCBTTT
T ss_pred CHHHHHHHHHHHHHHHHCCC-eEEEEEeeCCCcHHHHHHHHHHHHHhCCCcCEE-EECChHHHHHHHHHHHHcCCCCCCC
Confidence 2445667889999999986 2222222222234444455555554444 554 345667788999999999987554
Q ss_pred eEEEEcC
Q 003054 145 CVWIMTD 151 (852)
Q Consensus 145 ~vwi~~~ 151 (852)
...++.+
T Consensus 235 i~vvg~d 241 (350)
T 3h75_A 235 LLFSGVN 241 (350)
T ss_dssp BEEEEES
T ss_pred eEEEecC
Confidence 3344433
No 128
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=95.44 E-value=0.12 Score=50.58 Aligned_cols=180 Identities=12% Similarity=-0.003 Sum_probs=107.4
Q ss_pred EeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEeeeeeecCcceeeeccccccccceEEEE
Q 003054 377 GYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIV 456 (852)
Q Consensus 377 G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv 456 (852)
.+..+++..+.++.+ .+++++.. ++..+++.+|.+|++|+++...... ...+. ..++....+++++
T Consensus 21 ~~l~~~l~~f~~~~P-~i~i~i~~---------~~~~~~~~~l~~g~~Di~i~~~~~~---~~~~~-~~~l~~~~~~~v~ 86 (222)
T 4ab5_A 21 DWLMPAMGEFRPMWP-QVELDIVS---------GFQADPVGLLLQHRADLAIVSEAEK---QNGIS-FQPLFAYEMVGIC 86 (222)
T ss_dssp HHHHHHHHHHHHHST-TEEEEEEC---------CCCSCTHHHHHTTSCSEEEESCCCC---CTTEE-EEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHCC-CcEEEEec---------CCHHHHHHHHHcCCcCEEEecCCCC---cCCeE-EEEeecCcEEEEe
Confidence 345678888988887 25555543 2456889999999999998643222 22232 4677788888888
Q ss_pred EccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCCCCCCCcccccchhHHHHHHHhhhccccccccchhh
Q 003054 457 PIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNEDFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLAR 536 (852)
Q Consensus 457 ~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R 536 (852)
+......
T Consensus 87 ~~~~pl~------------------------------------------------------------------------- 93 (222)
T 4ab5_A 87 APDHPLA------------------------------------------------------------------------- 93 (222)
T ss_dssp CTTSGGG-------------------------------------------------------------------------
T ss_pred cCCChhh-------------------------------------------------------------------------
Confidence 8552110
Q ss_pred HHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCCeEEE-EeCchH----HHHHHhcCCCCcceeecCCH
Q 003054 537 IVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNVGY-QKGSFV----LGILKQLGFDERKLVVYNSP 611 (852)
Q Consensus 537 ~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~vg~-~~~s~~----~~~l~~~~~~~~~~~~~~~~ 611 (852)
....-+++||. +.++.. ..++.. ..++++.+.... ....++.
T Consensus 94 ------------------------------~~~~i~~~dL~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 140 (222)
T 4ab5_A 94 ------------------------------AKNVWTAEDFI--GETLITYPVPDEMLDLPKKILIPKNINPP-RRHSELT 140 (222)
T ss_dssp ------------------------------GCSEECGGGGS--SSCEEECSSCGGGCHHHHHTTGGGTCCCC-EEECSCH
T ss_pred ------------------------------ccCCcCHHHHc--CCCEEecCCCcHHHHHHHHHHHHcCCCCC-eEecCCH
Confidence 00123688886 444444 334333 334445556555 6778899
Q ss_pred hHHHHHhhcccccCceeEEEechhHHHHHHhhcCCceEeecccccccceEEEecCCCCchhhHHHHHHhc
Q 003054 612 EDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCSKYAMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNV 681 (852)
Q Consensus 612 ~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l 681 (852)
+...+++..|. ..+++.+.....+....... ...+.+......++++.+++.+....+...+..+
T Consensus 141 ~~~~~~v~~g~----gi~~~p~~~~~~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 205 (222)
T 4ab5_A 141 IAIIQLVASRR----GIAALPYWTVMPYLEKGYVV-HRQITADGLQSKLYAAIRTEDTDKSYLNNFCQII 205 (222)
T ss_dssp HHHHHHHHTTS----CBEEEEHHHHHHHHHTTSCE-EEEESTTCCEEEEEEEEEGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCC----eEEEcchHHhHHHhhcCcEE-EEecCCCccceEEEEEEeCCcccCHHHHHHHHHH
Confidence 99999999998 55665554333333222221 1223333345677888888866555555555444
No 129
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=95.44 E-value=0.032 Score=58.21 Aligned_cols=137 Identities=12% Similarity=-0.052 Sum_probs=85.5
Q ss_pred HHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCC--cEEEEEEEe------CCcccccHHHH
Q 003054 7 IQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGW--REAVPIYVD------NQYGEEMIPSL 78 (852)
Q Consensus 7 ~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw--~~vaii~~d------~~~G~~~~~~l 78 (852)
...+.+.++|+|......+.. +.+-.+..++...++.+++++.+.|. ++++++..+ ........+.|
T Consensus 87 ~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf 161 (304)
T 3gbv_A 87 TDALNELGIPYIYIDSQIKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGF 161 (304)
T ss_dssp HHHHHHHTCCEEEESSCCTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEEeCCCCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHH
Confidence 344556699999876533221 12334566777788888899888887 999999843 23446678889
Q ss_pred HHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCc
Q 003054 79 TDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDG 152 (852)
Q Consensus 79 ~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~ 152 (852)
.+++++.|..+........+.+...-...+.++.+ ..+++|+..... +..++++++++|+ .+...++.|.
T Consensus 162 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~--a~g~~~al~~~g~--~di~vig~d~ 233 (304)
T 3gbv_A 162 RQYMQEHHPACNILELNLHADLNIEDSRMLDDFFREHPDVKHGITFNSK--VYIIGEYLQQRRK--SDFSLIGYDL 233 (304)
T ss_dssp HHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCTTCCEEEESSSC--THHHHHHHHHTTC--CSCEEEEESC
T ss_pred HHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCCCeEEEEEcCcc--hHHHHHHHHHcCC--CCcEEEEeCC
Confidence 99999987654322221111111222333444333 367888766654 7789999999998 4444555444
No 130
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=95.40 E-value=0.049 Score=56.76 Aligned_cols=137 Identities=12% Similarity=0.130 Sum_probs=89.7
Q ss_pred HhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCC--cccccHHHHHHHHHhC
Q 003054 8 QLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLTDALQAI 85 (852)
Q Consensus 8 ~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~--~G~~~~~~l~~~l~~~ 85 (852)
..+.+.++|+|......+ .. .+-.+..++..-+..++++|.+.|-++++++..... ......+.|.+++++.
T Consensus 82 ~~l~~~~iPvV~~~~~~~---~~---~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~ 155 (294)
T 3qk7_A 82 QYLQKQNFPFLALGRSHL---PK---PYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRLQGYVQTMSEA 155 (294)
T ss_dssp HHHHHTTCCEEEESCCCC---SS---CCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCEEEECCCCC---CC---CCCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHHHHHHHHHHHC
Confidence 445667899998765321 12 223356677778888888998889999999985543 3456688999999999
Q ss_pred CceeeeeeecCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHHcCCcccceE-EEEcC
Q 003054 86 DTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCV-WIMTD 151 (852)
Q Consensus 86 g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~v-wi~~~ 151 (852)
|+.+.....+..+.+..+-...+.++.+. .+++|+. .+...+..++++++++|+..|+-+ .++-|
T Consensus 156 g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~vig~D 223 (294)
T 3qk7_A 156 GLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAIIT-DCNMLGDGVASALDKAGLLGGEGISLIAYD 223 (294)
T ss_dssp TCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEEE-SSHHHHHHHHHHHHHTTCSSTTSCEEEEET
T ss_pred CCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCceEEEeec
Confidence 98753221111112233444455555543 5677664 566778899999999999765443 44433
No 131
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=95.28 E-value=0.071 Score=56.93 Aligned_cols=136 Identities=9% Similarity=0.028 Sum_probs=89.7
Q ss_pred HHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeC---CcccccHHHHHHHHH
Q 003054 7 IQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDN---QYGEEMIPSLTDALQ 83 (852)
Q Consensus 7 ~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~---~~G~~~~~~l~~~l~ 83 (852)
...+.+.++|+|...... . .+....+..++..-+..+++++...|.+++++|.... .......+.|.++++
T Consensus 140 ~~~l~~~~iPvV~i~~~~---~---~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~ 213 (344)
T 3kjx_A 140 RAMLDAAGIPVVEIMDSD---G---KPVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEGFTEVLG 213 (344)
T ss_dssp HHHHHHCSSCEEEEEECS---S---CCSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCC---C---CCCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccHHHHHHHHHHHHH
Confidence 344566799999875321 1 1223345667777888888888888999999998543 335566788999999
Q ss_pred hCCceeeeeeecCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEE
Q 003054 84 AIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 149 (852)
Q Consensus 84 ~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~ 149 (852)
+.|+.+.....+..+.+..+-...+.++.+ ..+++|+ +.+...+..++++++++|+..|+-+-|+
T Consensus 214 ~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~disvv 280 (344)
T 3kjx_A 214 KNGVEIEDREFYSGGSALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGIDIPGQIGLA 280 (344)
T ss_dssp HTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HcCCCCChheEEeCCCCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999876544433222223333344444443 3577776 4566778999999999999766544443
No 132
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=95.20 E-value=0.074 Score=55.05 Aligned_cols=136 Identities=12% Similarity=0.053 Sum_probs=88.9
Q ss_pred HHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHH--cCCcEEEEEEEeCC--cccccHHHHHHHH
Q 003054 7 IQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKA--FGWREAVPIYVDNQ--YGEEMIPSLTDAL 82 (852)
Q Consensus 7 ~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~--~gw~~vaii~~d~~--~G~~~~~~l~~~l 82 (852)
...+.+.++|+|......+ +.+..+..++...+..+++++.+ .|-++++++..+.. ......+.+.+++
T Consensus 79 ~~~~~~~~iPvV~~~~~~~-------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l 151 (291)
T 3l49_A 79 LQKINDAGIPLFTVDTATP-------HAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVL 151 (291)
T ss_dssp HHHHHHTTCCEEEESCCCT-------TCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEEecCCCC-------CcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHH
Confidence 4456677999999865332 12334566777788888888877 89999999974332 3345678899999
Q ss_pred HhC-CceeeeeeecCCCC-ChHHHHHHHHHhhcC-----CceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCc
Q 003054 83 QAI-DTRVPYRSVISPLA-TDDQIEKELYKLFTM-----QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDG 152 (852)
Q Consensus 83 ~~~-g~~v~~~~~~~~~~-~~~d~~~~l~~l~~~-----~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~ 152 (852)
++. |+++.....+.... +.++-...+.++.+. ++++|+ +.+...+..++++++++|+. +...++.|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~--di~vvg~d~ 225 (291)
T 3l49_A 152 EAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAIW-ACWDVPMIGATQALQAAGRT--DIRTYGVDG 225 (291)
T ss_dssp HTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEEE-ESSHHHHHHHHHHHHHTTCC--SCEEEEEEC
T ss_pred HHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcCEEE-ECCCchHHHHHHHHHHcCCC--CeEEEEecC
Confidence 998 67755443332221 223334455555443 567774 45677888999999999985 444444433
No 133
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=95.17 E-value=0.056 Score=56.37 Aligned_cols=129 Identities=3% Similarity=-0.150 Sum_probs=86.4
Q ss_pred HhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcC-----CcEEEEEEEeC--CcccccHHHHHH
Q 003054 8 QLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFG-----WREAVPIYVDN--QYGEEMIPSLTD 80 (852)
Q Consensus 8 ~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~g-----w~~vaii~~d~--~~G~~~~~~l~~ 80 (852)
..+. .++|+|......+.......+.+..+..++...+..+++++.+.| -++++++.... .......+.|.+
T Consensus 82 ~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R~~gf~~ 160 (304)
T 3o1i_D 82 KSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPVTTGFYE 160 (304)
T ss_dssp HHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHHHHHHHH
T ss_pred HHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHHHHHHHH
Confidence 3345 899999975544322222334566777788888888999998888 89999997432 345667899999
Q ss_pred HHHhCCceeeeeeecCCCCChHHHHHHHHHhh-cCCceEEEEEeChhhHHHHHHHHHHcCCc
Q 003054 81 ALQAIDTRVPYRSVISPLATDDQIEKELYKLF-TMQTRVFILHMLPSLGSRIFEKANEIGLM 141 (852)
Q Consensus 81 ~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~-~~~~~viv~~~~~~~~~~i~~~a~~~G~~ 141 (852)
++++.|+++.... ..+.+...-...+.++. ...+++ | +++...+..++++++++|+.
T Consensus 161 ~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 161 AIKNSDIHIVDSF--WADNDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSADKT 218 (304)
T ss_dssp TTTTBTEEEEECC--CCCSCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTTCG
T ss_pred HHhcCCCEEEEee--cCCCcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcCCC
Confidence 9999998876543 22222333333444433 346788 4 45777889999999999985
No 134
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=95.14 E-value=0.12 Score=54.40 Aligned_cols=138 Identities=4% Similarity=-0.019 Sum_probs=85.0
Q ss_pred HHHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHH---cCCcEEEEEEEe--CCcccccHHHHHH
Q 003054 6 IIQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKA---FGWREAVPIYVD--NQYGEEMIPSLTD 80 (852)
Q Consensus 6 v~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~---~gw~~vaii~~d--~~~G~~~~~~l~~ 80 (852)
+...+.+.+||+|.+....+. . .+..+....++...++.++++|.+ .|-+++++|... +.......+.+.+
T Consensus 77 ~~~~a~~~gipvV~~d~~~~~---~-~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~~~ 152 (316)
T 1tjy_A 77 ALKRAMQRGVKILTWDSDTKP---E-CRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEAKA 152 (316)
T ss_dssp HHHHHHHTTCEEEEESSCCCG---G-GCSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHCcCEEEEecCCCCC---C-CceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHHHH
Confidence 345566789999998543211 1 122333245666677888888755 578999999833 3345667788899
Q ss_pred HHHhC--CceeeeeeecCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCc
Q 003054 81 ALQAI--DTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDG 152 (852)
Q Consensus 81 ~l~~~--g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~ 152 (852)
++++. ++++.....- +.+.++-...+.++.+. ++++|+. .+...+..++++++++| . .+...++.+.
T Consensus 153 ~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~~~~~aI~~-~nD~~A~g~~~al~~~G-~-~dv~VvG~D~ 223 (316)
T 1tjy_A 153 KISQEHPGWEIVTTQFG--YNDATKSLQTAEGIIKAYPDLDAIIA-PDANALPAAAQAAENLK-R-NNLAIVGFST 223 (316)
T ss_dssp HHHHHCTTEEEEEEEEC--TTCHHHHHHHHHHHHHHCSSCCEEEE-CSTTHHHHHHHHHHHTT-C-CSCEEEEBCC
T ss_pred HHHhhCCCcEEEEeccC--CCCHHHHHHHHHHHHHhCCCCCEEEE-CCCccHHHHHHHHHHcC-C-CCEEEEEeCC
Confidence 99765 5665543221 22344445556665544 4566554 45667888999999999 5 4444454443
No 135
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=95.12 E-value=0.084 Score=53.97 Aligned_cols=136 Identities=10% Similarity=0.037 Sum_probs=90.1
Q ss_pred HhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCC--cccccHHHHHHHHHhC
Q 003054 8 QLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLTDALQAI 85 (852)
Q Consensus 8 ~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~--~G~~~~~~l~~~l~~~ 85 (852)
..+.+.++|+|......+. .. +..+..++...++.+++++.+.|.++++++..+.. ......+.|.+++++.
T Consensus 76 ~~~~~~~iPvV~~~~~~~~---~~---~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~ 149 (272)
T 3o74_A 76 RELQDKGLPVIAIDRRLDP---AH---FCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEALQGY 149 (272)
T ss_dssp HHHHHTTCCEEEESSCCCT---TT---CEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHTTTC
T ss_pred HHHHHcCCCEEEEccCCCc---cc---cCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHHHHc
Confidence 3455678999887553321 11 23355677778888889998889999999986543 4566788999999999
Q ss_pred CceeeeeeecCCCCChHHHHHHHHHhhcC---CceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCc
Q 003054 86 DTRVPYRSVISPLATDDQIEKELYKLFTM---QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDG 152 (852)
Q Consensus 86 g~~v~~~~~~~~~~~~~d~~~~l~~l~~~---~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~ 152 (852)
|+++.....-. .+.++-...+.++.+. .+++|+. .+...+..++++++++|+.+.+...++-+.
T Consensus 150 ~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~vp~di~vvg~d~ 216 (272)
T 3o74_A 150 TGEVRRYQGEA--FSRECGQRLMQQLIDDLGGLPDALVT-TSYVLLQGVFDTLQARPVDSRQLQLGTFGD 216 (272)
T ss_dssp CSEEEEEEESS--SSHHHHHHHHHHHHHHHTSCCSEEEE-SSHHHHHHHHHHHHTSCGGGCCCEEEEESC
T ss_pred CCChheeecCC--CCHHHHHHHHHHHHhcCCCCCcEEEE-eCchHHHHHHHHHHHcCCCccceEEEEeCC
Confidence 98765433222 2344444555555433 4787755 566778899999999998333344554443
No 136
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=95.08 E-value=0.12 Score=50.97 Aligned_cols=182 Identities=9% Similarity=-0.029 Sum_probs=109.4
Q ss_pred eeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEeeeeeecCcceeeeccccccccceEEEEE
Q 003054 378 YCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVP 457 (852)
Q Consensus 378 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~ 457 (852)
+..+++..+.++.+ .+++++.. ++..+++.+|.+|++|+++....... ..+. ..++....++++++
T Consensus 25 ~l~~~l~~~~~~~P-~v~i~~~~---------~~~~~~~~~l~~g~~Dl~i~~~~~~~---~~l~-~~~l~~~~~~~v~~ 90 (232)
T 3ho7_A 25 LLPRVFPIWKKELA-GLEIHVSE---------MQTSRCLASLLSGEIDMAIIASKAET---EGLE-DDLLYYEEFLGYVS 90 (232)
T ss_dssp HHHHHHHHHHHHST-TEEEEEEE---------CCHHHHHHHHHHTSCSEEEESSCCCC---TTEE-EEEEEEEEEEEEEC
T ss_pred hhHHHHHHHHHHCC-CcEEEEEe---------CCHHHHHHHHHcCCCCEEEEcCCCCC---CCeE-EEEecccCEEEEEc
Confidence 55688888988887 35666554 35789999999999999986443222 2232 46777888888888
Q ss_pred ccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCCCCCCCcccccchhHHHHHHHhhhccccccccchhhH
Q 003054 458 IKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNEDFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLARI 537 (852)
Q Consensus 458 ~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~ 537 (852)
......
T Consensus 91 ~~hpl~-------------------------------------------------------------------------- 96 (232)
T 3ho7_A 91 RCEPLF-------------------------------------------------------------------------- 96 (232)
T ss_dssp TTSGGG--------------------------------------------------------------------------
T ss_pred CCCccc--------------------------------------------------------------------------
Confidence 552110
Q ss_pred HHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCCeEE-EEeC----chHHHHHHhcCCC-CcceeecCCH
Q 003054 538 VVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNVG-YQKG----SFVLGILKQLGFD-ERKLVVYNSP 611 (852)
Q Consensus 538 v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~vg-~~~~----s~~~~~l~~~~~~-~~~~~~~~~~ 611 (852)
....-+++||. +.++. ...+ .....++.+.++. .......++.
T Consensus 97 -----------------------------~~~~~~~~dL~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (232)
T 3ho7_A 97 -----------------------------EQDVIRTTEVN--PHRLWLLDEGHCFRDQLVRFCQMKGLHERQTAYSGGSM 145 (232)
T ss_dssp -----------------------------GSSSBCGGGCC--GGGBCCCTTTTTTTSTTHHHHTCTTTTCSSEEEESCCH
T ss_pred -----------------------------cCCCcCHHHhc--CCCEEEecCCCcHHHHHHHHHHHcCCCcCceeEEeCCH
Confidence 00123566665 22222 2222 2345666666664 5556788899
Q ss_pred hHHHHHhhcccccCceeEEEechhHHHHHHhhcCCceEeecccccccceEEEecCCCCchhhHHHHHHhccc
Q 003054 612 EDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCSKYAMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTE 683 (852)
Q Consensus 612 ~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e 683 (852)
+...+++..|. ..+++-+.....+....... ...+........++++.+++.+....+...+..+.+
T Consensus 146 ~~~~~~v~~g~----gi~~~p~~~~~~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 212 (232)
T 3ho7_A 146 EAFMRLVESGQ----GITFIPQLTVEQLSPSQKEL-VRPFGMPRPVREVRLAVRQDYSRRKLREQLIGLLRS 212 (232)
T ss_dssp HHHHHHHHTTC----CEEEEEGGGGGGSCHHHHTT-EECBCSSEEEEEEEEEEETTCSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCC----cEEEecHHHhhhhcccCceE-EEEccCCCceEEEEEEEeCCCccCHHHHHHHHHHHH
Confidence 99999999998 56666554332221122221 222333344567888999987766666555554433
No 137
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=94.99 E-value=0.11 Score=53.68 Aligned_cols=135 Identities=10% Similarity=0.064 Sum_probs=89.4
Q ss_pred HHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHH-c-CCc-----EEEEEEEe--CCcccccHHH
Q 003054 7 IQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKA-F-GWR-----EAVPIYVD--NQYGEEMIPS 77 (852)
Q Consensus 7 ~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~-~-gw~-----~vaii~~d--~~~G~~~~~~ 77 (852)
...+.+.++|+|......+. .+.+..+..++...+..+++++.. + |-+ +++++... ........+.
T Consensus 82 ~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~~R~~g 156 (293)
T 3l6u_A 82 IEEAKKAGIPVFAIDRMIRS-----DAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRG 156 (293)
T ss_dssp HHHHHHTTCCEEEESSCCCC-----TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHHcCCCEEEecCCCCC-----CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHHHHHHH
Confidence 34455679999987654332 123445667888888888888766 5 777 99999843 3345667889
Q ss_pred HHHHHHhC-CceeeeeeecCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcC
Q 003054 78 LTDALQAI-DTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTD 151 (852)
Q Consensus 78 l~~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~ 151 (852)
|.+++++. |+++.....-. .+..+-...+.++.+. .+++|+ +.+...+..++++++++|+. +...++.|
T Consensus 157 f~~~l~~~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~--di~vig~d 228 (293)
T 3l6u_A 157 FLKGIENEPTLSIVDSVSGN--YDPVTSERVMRQVIDSGIPFDAVY-CHNDDIAMGVLEALKKAKIS--GKIVVGID 228 (293)
T ss_dssp HHHHHTTCTTEEEEEEEECT--TCHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCC--CCEEEEEE
T ss_pred HHHHHHhCCCcEEeeeccCC--CCHHHHHHHHHHHHHhCCCCCEEE-ECCchHHHHHHHHHHhCCCC--CeEEEEec
Confidence 99999998 98876543222 2344445556665544 456654 45666788999999999985 34444443
No 138
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=94.97 E-value=0.062 Score=55.50 Aligned_cols=99 Identities=8% Similarity=-0.096 Sum_probs=57.0
Q ss_pred HHHHhcCCeEEEE-eCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEec-hhHHHHHHhhcCCceEee
Q 003054 574 KMLIKRGDNVGYQ-KGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDE-IPYMKLLIGQYCSKYAMI 651 (852)
Q Consensus 574 ~dL~~~~~~vg~~-~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~-~~~~~~~~~~~~~~~~~v 651 (852)
+||. |++||+. .++....+++.. ....+++ +.+..+..++|.+|+ +||++.. .+... +... .+..+
T Consensus 99 ~DLk--GK~Iav~~~~s~~~~ll~~~-l~~~~~~-~~~~~~~~~al~~G~----vDa~~~~~~~~~~-~~~~---g~~~~ 166 (280)
T 1zbm_A 99 ISLD--GKRIAVPGRYTTANLLLKLA-VEDFEPV-EMPFDRIIQAVLDEE----VDAGLLIHEGQIT-YADY---GLKCV 166 (280)
T ss_dssp CCCT--TCEEEESCTTSHHHHHHHHH-CSSCEEE-ECCGGGHHHHHHTTS----SSEEEECSGGGGT-GGGG---TCEEE
T ss_pred hhcC--CCEEEecCCCcHHHHHHHHH-hccCceE-ecCHHHHHHHHHcCC----CCEEEEechHHhH-HHhc---CCeEe
Confidence 6775 8999996 455444445543 2233443 446678999999999 9998744 34433 2222 12222
Q ss_pred cc---c------ccccceEEEecCC-CC-chhhHHHHHHhcccc
Q 003054 652 EP---K------FKTAGFGFVFPLH-SP-LVHDVSKAILNVTEG 684 (852)
Q Consensus 652 ~~---~------~~~~~~~~~~~k~-sp-l~~~in~~il~l~e~ 684 (852)
.+ . ......+++++++ .| ++..|.+++.+..+.
T Consensus 167 ~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~ 210 (280)
T 1zbm_A 167 LDLWDWWSEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRESIAF 210 (280)
T ss_dssp EEHHHHHHTTCSSCEEEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhhCCCCCeeEEEEcccCCHHHHHHHHHHHHHHHHH
Confidence 11 0 1111236778887 55 777777777766543
No 139
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=94.96 E-value=0.15 Score=52.48 Aligned_cols=135 Identities=7% Similarity=0.064 Sum_probs=83.7
Q ss_pred HhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHc-C-CcEEEEEEEeCC--cccccHHHHHHHHH
Q 003054 8 QLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAF-G-WREAVPIYVDNQ--YGEEMIPSLTDALQ 83 (852)
Q Consensus 8 ~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~-g-w~~vaii~~d~~--~G~~~~~~l~~~l~ 83 (852)
..+.+.++|+|......+ + .+.+..+..++..-++.++++|.+. | -++++++..... ......+.++++++
T Consensus 76 ~~~~~~~iPvV~~~~~~~---~--~~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~al~ 150 (283)
T 2ioy_A 76 KEANSKNIPVITIDRSAN---G--GDVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDEAIA 150 (283)
T ss_dssp HHHHHTTCCEEEESSCCS---S--SCCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCeEEEecCCCC---C--cceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHH
Confidence 334567899998754221 1 1122334556666778888887555 5 899999985432 34556788999999
Q ss_pred hC-CceeeeeeecCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCc
Q 003054 84 AI-DTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDG 152 (852)
Q Consensus 84 ~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~ 152 (852)
+. |+++.....- +.+.++-...+.++.+. .+++|+ +.+...+..++++++++|+ .+...++-|.
T Consensus 151 ~~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~--~di~viG~D~ 217 (283)
T 2ioy_A 151 KYPDIKIVAKQAA--DFDRSKGLSVMENILQAQPKIDAVF-AQNDEMALGAIKAIEAANR--QGIIVVGFDG 217 (283)
T ss_dssp TCTTEEEEEEEEC--TTCHHHHHHHHHHHHHHCSCCCEEE-ESSHHHHHHHHHHHHHTTC--CCCEEEEEEC
T ss_pred hCCCCEEEeeccC--CCCHHHHHHHHHHHHHhCCCccEEE-ECCchHHHHHHHHHHHCCC--CCcEEEEeCC
Confidence 88 8876533221 22234444455555443 456654 4566678899999999998 4444554443
No 140
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=94.88 E-value=0.13 Score=53.31 Aligned_cols=128 Identities=12% Similarity=0.072 Sum_probs=86.4
Q ss_pred cCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCC-cccccHHHHHHHHHhCCce
Q 003054 10 GNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQ-YGEEMIPSLTDALQAIDTR 88 (852)
Q Consensus 10 ~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~-~G~~~~~~l~~~l~~~g~~ 88 (852)
+.+ ++|+|......+ + +.+-.+..++..-+..+++++.+.|-++++++..... ......+.|.+++++.|..
T Consensus 85 ~~~-~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~ 157 (289)
T 3k9c_A 85 LAD-RVPALVVARASG---L---PGVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAAMDRHGLS 157 (289)
T ss_dssp HHT-TSCEEEESSCCS---S---TTSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHHHHHTTCG
T ss_pred HHc-CCCEEEEcCCCC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHHHHHCCCC
Confidence 344 999998765332 1 2233456677778888889988889999999985433 3456678899999999987
Q ss_pred eeeeeecCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHHcCCcccceE
Q 003054 89 VPYRSVISPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCV 146 (852)
Q Consensus 89 v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~v 146 (852)
+... .+..+.+..+-...+.++.+ ..+++|+ +.+...+..++++++++|+..|+-+
T Consensus 158 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di 215 (289)
T 3k9c_A 158 ASAT-VVTGGTTETEGAEGMHTLLEMPTPPTAVV-AFNDRCATGVLDLLVRSGRDVPADI 215 (289)
T ss_dssp GGEE-EECCCSSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred CCcc-EEECCCCHHHHHHHHHHHHcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCce
Confidence 5332 22222334444555666654 3567765 4566778899999999999765443
No 141
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=94.84 E-value=0.17 Score=51.09 Aligned_cols=126 Identities=12% Similarity=0.023 Sum_probs=82.3
Q ss_pred CCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEe--C-CcccccHHHHHHHHHhCCce
Q 003054 12 KSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVD--N-QYGEEMIPSLTDALQAIDTR 88 (852)
Q Consensus 12 ~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d--~-~~G~~~~~~l~~~l~~~g~~ 88 (852)
+.++|+|...... +.+-.+..++..-+..+++++.+.|.++++++..+ + .......+.|.+++++.|++
T Consensus 77 ~~~~pvV~~~~~~--------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~ 148 (255)
T 1byk_A 77 HWQSSLVLLARDA--------KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLH 148 (255)
T ss_dssp GGSSSEEEESSCC--------SSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCC
T ss_pred hcCCCEEEEcccc--------CCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHHHHHcCCC
Confidence 3466766654311 11234455666777888898888899999999853 2 34566788899999999986
Q ss_pred eeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcC
Q 003054 89 VPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTD 151 (852)
Q Consensus 89 v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~ 151 (852)
+.. +..+.+..+-...+.++.+.++++|++ .+...+..+++++++.|+ .+...++-|
T Consensus 149 ~~~---~~~~~~~~~~~~~~~~~l~~~~~ai~~-~~d~~A~g~~~al~~~g~--~di~vig~d 205 (255)
T 1byk_A 149 PVA---ALPGLAMKQGYENVAKVITPETTALLC-ATDTLALGASKYLQEQRI--DTLQLASVG 205 (255)
T ss_dssp CEE---ECCCSCHHHHHHHSGGGCCTTCCEEEE-SSHHHHHHHHHHHHHTTC--CSCEEEEEC
T ss_pred cce---eecCCccchHHHHHHHHhcCCCCEEEE-eChHHHHHHHHHHHHcCC--CcEEEEEeC
Confidence 431 222223333444556665567888765 566678899999999998 444444443
No 142
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=94.80 E-value=0.13 Score=54.73 Aligned_cols=127 Identities=11% Similarity=0.065 Sum_probs=83.4
Q ss_pred cCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCC--cccccHHHHHHHHHhCCc
Q 003054 10 GNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLTDALQAIDT 87 (852)
Q Consensus 10 ~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~--~G~~~~~~l~~~l~~~g~ 87 (852)
+.+.++|+|......+. ...+ .+..++..-+..+++++...|-++++++..... ......+.|.+++++.|+
T Consensus 132 ~~~~~iPvV~~~~~~~~---~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~ 205 (333)
T 3jvd_A 132 IAPEGIPMVQLTRGELG---PGFP---RVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGISHAASIYGA 205 (333)
T ss_dssp CC-CCSCEEEECC-------CCSC---EEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred HhhCCCCEEEECccCCC---CCCC---EEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHCCC
Confidence 45678999987653322 2223 345677777888888988889999999985533 356678899999999998
Q ss_pred eeeeeeecCCCCChHHHHHHHHHhhcCC-ceEEEEEeChhhHHHHHHHHHHcCCcccceE
Q 003054 88 RVPYRSVISPLATDDQIEKELYKLFTMQ-TRVFILHMLPSLGSRIFEKANEIGLMNKGCV 146 (852)
Q Consensus 88 ~v~~~~~~~~~~~~~d~~~~l~~l~~~~-~~viv~~~~~~~~~~i~~~a~~~G~~~~~~v 146 (852)
... ... .+.+.++-...+.++.+.. +++|+. .+...+..++++++++|+..|+-+
T Consensus 206 ~~~--~~~-~~~~~~~~~~~~~~ll~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di 261 (333)
T 3jvd_A 206 EVT--FHF-GHYSVESGEEMAQVVFNNGLPDALIV-ASPRLMAGVMRAFTRLNVRVPHDV 261 (333)
T ss_dssp EEE--EEE-CCSSHHHHHHHHHHHHHTCCCSEEEE-CCHHHHHHHHHHHHHTTCCTTTTC
T ss_pred CEE--Eec-CCCCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCce
Confidence 721 110 1122344444555554433 787764 566778899999999999765443
No 143
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=94.77 E-value=0.2 Score=53.58 Aligned_cols=135 Identities=13% Similarity=0.133 Sum_probs=87.8
Q ss_pred HhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCc---ccccHHHHHHHHHh
Q 003054 8 QLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQY---GEEMIPSLTDALQA 84 (852)
Q Consensus 8 ~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~---G~~~~~~l~~~l~~ 84 (852)
..+.+.++|+|...... . .+....+..++..-+..++++|...|-+++++|..+... .....+.|.+++++
T Consensus 143 ~~l~~~~iPvV~i~~~~---~---~~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~ 216 (355)
T 3e3m_A 143 RLLQRASIPIVEIWEKP---A---HPIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFKRAMRE 216 (355)
T ss_dssp HHHHHCCSCEEEESSCC---S---SCSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEECCcc---C---CCCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHHHHHHH
Confidence 44556799999864221 1 122334566777777888889988899999999965432 45678899999999
Q ss_pred CCceeeeeeecC-CCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEE
Q 003054 85 IDTRVPYRSVIS-PLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 149 (852)
Q Consensus 85 ~g~~v~~~~~~~-~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~ 149 (852)
.|+.+.....+. ...+.++-...+.++.+ ..+++|+. .+...+..+++.++++|+..|+-+-|+
T Consensus 217 ~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~disvi 283 (355)
T 3e3m_A 217 AGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIFC-VSDMPAFGLLSRLKSIGVAVPEQVSVV 283 (355)
T ss_dssp TTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHHTCCTTTTCEEE
T ss_pred CCcCCCccEEEecCCCCHHHHHHHHHHHHcCCCCCcEEEE-CChHHHHHHHHHHHHcCCCCCCceEEE
Confidence 998764222221 11223333344444443 46777664 567778899999999999766444333
No 144
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=94.74 E-value=0.58 Score=46.35 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=57.6
Q ss_pred CCceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcC
Q 003054 343 NEKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLG 422 (852)
Q Consensus 343 ~~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g 422 (852)
..+.|+||+. +.+ ...+...++..+.++.+- +++++... +...++++|.+|
T Consensus 17 ~~g~l~Ig~~--~~~-----------------~~~~l~~~l~~f~~~~P~-i~l~~~~~---------~~~~~~~~l~~g 67 (241)
T 3oxn_A 17 CDQTFTIATT--DYA-----------------MQTILPFALPRIYQEAPN-VSFNFLPL---------QHDRLSDQLTYE 67 (241)
T ss_dssp CCCEEEEEEC--SHH-----------------HHHTHHHHHHHHHHHCTT-CEEEEEEC---------CGGGHHHHHHTS
T ss_pred CCceEEEEec--hHH-----------------HHHHHHHHHHHHHHHCCC-CEEEEEEC---------CcccHHHHHHcC
Confidence 3578999987 221 123456888999888872 56665542 467999999999
Q ss_pred cccEEEeeeeeecCcceeeeccccccccceEEEEEcc
Q 003054 423 EFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIK 459 (852)
Q Consensus 423 ~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~ 459 (852)
++|+++.... .....+. ..++....++++++..
T Consensus 68 ~~Dl~i~~~~---~~~~~~~-~~~l~~~~~~~v~~~~ 100 (241)
T 3oxn_A 68 GADLAICRPT---GPVEPLR-SEILGRVGVLCLLSKQ 100 (241)
T ss_dssp CCSEEEECCS---SCCTTEE-EEEEECCCEEEEEETT
T ss_pred CCCEEEecCC---CCCccce-eEEeecccEEEEEeCC
Confidence 9999986322 2222333 4677888899999865
No 145
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=94.68 E-value=0.13 Score=53.75 Aligned_cols=132 Identities=8% Similarity=0.035 Sum_probs=82.9
Q ss_pred HhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcC---CcEEEEEEEeC--CcccccHHHHHHHH
Q 003054 8 QLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFG---WREAVPIYVDN--QYGEEMIPSLTDAL 82 (852)
Q Consensus 8 ~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~g---w~~vaii~~d~--~~G~~~~~~l~~~l 82 (852)
..+.+.++|+|......+... ..+++..+..++...++.+++++.+.| -++++++.... .......+.|++++
T Consensus 77 ~~~~~~~iPvV~~~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~Gf~~al 154 (306)
T 2vk2_A 77 KEAKDAEIPVFLLDRSIDVKD--KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAI 154 (306)
T ss_dssp HHHHHTTCCEEEESSCCCCSC--GGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCEEEecCCCCCCC--ccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHHHHHHH
Confidence 344567899998765332211 011344566677777788888886666 79999998542 33456678899999
Q ss_pred HhCCc-eeeeeeecCCCCChHHHHHHHHHhhc-----CCceEEEEEeChhhHHHHHHHHHHcCCcccc
Q 003054 83 QAIDT-RVPYRSVISPLATDDQIEKELYKLFT-----MQTRVFILHMLPSLGSRIFEKANEIGLMNKG 144 (852)
Q Consensus 83 ~~~g~-~v~~~~~~~~~~~~~d~~~~l~~l~~-----~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~ 144 (852)
++.|. ++.... ..+.+..+-...+.++.+ ..+++|+. .+...+..++++++++|+..|+
T Consensus 155 ~~~g~~~~~~~~--~~~~~~~~~~~~~~~ll~~~~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~ 219 (306)
T 2vk2_A 155 KNAPNIKIIRSQ--SGDFTRSKGKEVMESFIKAENNGKNICMVYA-HNDDMVIGAIQAIKEAGLKPGK 219 (306)
T ss_dssp TTCTTEEEEEEE--ECTTCHHHHHHHHHHHHHHTTTTTTCCEEEE-SSHHHHHHHHHHHHHTTCCBTT
T ss_pred hhCCCeEEEEec--cCCCcHHHHHHHHHHHHHhCCCCCCeeEEEE-CCchHHHHHHHHHHHcCCCCCC
Confidence 99885 433221 111223333344555443 35787765 4566788899999999997553
No 146
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=94.68 E-value=0.14 Score=53.35 Aligned_cols=129 Identities=15% Similarity=0.113 Sum_probs=85.8
Q ss_pred CccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeC--CcccccHHHHHHHHHhCCceeee
Q 003054 14 QVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDN--QYGEEMIPSLTDALQAIDTRVPY 91 (852)
Q Consensus 14 ~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~--~~G~~~~~~l~~~l~~~g~~v~~ 91 (852)
++|+|......+. ..+ .+..++..-+..++++|...|-++++++..+. .......+.|.+++++.|+.+..
T Consensus 94 ~iPvV~i~~~~~~----~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~ 166 (303)
T 3kke_A 94 GVPAVTINSRVPG----RVG---SVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEA 166 (303)
T ss_dssp TSCEEEESCCCTT----CCC---EEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCG
T ss_pred CCCEEEECCcCCC----CCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCc
Confidence 9999987654432 223 34567777778888888888999999998443 34566788899999999987643
Q ss_pred eeecCCCCChHHHHHHHHHh-----hcC--CceEEEEEeChhhHHHHHHHHHHcCCcccce-EEEEc
Q 003054 92 RSVISPLATDDQIEKELYKL-----FTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGC-VWIMT 150 (852)
Q Consensus 92 ~~~~~~~~~~~d~~~~l~~l-----~~~--~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~-vwi~~ 150 (852)
......+.+.++-...+.++ .+. .+++|+. .+...+..++++++++|+..|+- ..++-
T Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~vig~ 232 (303)
T 3kke_A 167 AWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVVV-ASVNAAVGALSTALRLGLRVPEDLSIVGI 232 (303)
T ss_dssp GGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred ceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCceEEEEE
Confidence 22222122334444556666 443 4677654 55667889999999999975543 34443
No 147
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=94.57 E-value=0.31 Score=50.55 Aligned_cols=121 Identities=12% Similarity=0.101 Sum_probs=81.5
Q ss_pred CCCccEEeeecCCCCCC----C--CCCCceEeccCCchhHHHHHHHHHHHc--CCcEEEEEEEeCC-cccccHHHHHHHH
Q 003054 12 KSQVPILSFSATSPSLT----S--IRSPYFFRGSLNDSSQAGAITAIIKAF--GWREAVPIYVDNQ-YGEEMIPSLTDAL 82 (852)
Q Consensus 12 ~~~vP~Is~~ats~~lt----~--~~~py~fR~~p~d~~~~~aia~~l~~~--gw~~vaii~~d~~-~G~~~~~~l~~~l 82 (852)
..++|+|..+..+|... + ...+.+..+. +..-+...++++.+. |.+++++|+.+.. .+....+.+++++
T Consensus 81 ~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~~g~~~al 158 (295)
T 3lft_A 81 TKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYA 158 (295)
T ss_dssp CSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeccChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHHHHHHHHH
Confidence 46899998765554321 1 1122444333 344466777888777 9999999996654 3566778999999
Q ss_pred HhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCC
Q 003054 83 QAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGL 140 (852)
Q Consensus 83 ~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~ 140 (852)
++.|+++...... +..+....+.++. .++|+|++... ..+...++++++.|.
T Consensus 159 ~~~gi~~~~~~~~----~~~~~~~~~~~l~-~~~dai~~~~D-~~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 159 EKAGLTVETFAVP----STNEIASTVTVMT-SKVDAIWVPID-NTIASGFPTVVSSNQ 210 (295)
T ss_dssp HHTTCEEEEEEES----SGGGHHHHHHHHT-TTCSEEEECSC-HHHHHTHHHHHHHTT
T ss_pred HHcCCEEEEEecC----CHHHHHHHHHHHH-hcCCEEEECCc-hhHHHHHHHHHHHHH
Confidence 9999988655432 2456777888887 47899887644 455556777777774
No 148
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=94.43 E-value=0.26 Score=52.28 Aligned_cols=134 Identities=11% Similarity=0.047 Sum_probs=85.5
Q ss_pred HhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeC-CcccccHHHHHHHHHhCC
Q 003054 8 QLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDN-QYGEEMIPSLTDALQAID 86 (852)
Q Consensus 8 ~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~-~~G~~~~~~l~~~l~~~g 86 (852)
..+...++|+|......+ . +.. .+..++..-+..+++++...|.++++++..+. .......+.+.+++++.|
T Consensus 135 ~~l~~~~iPvV~~~~~~~----~--~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g 207 (339)
T 3h5o_A 135 RILSQHALPVVYMMDLAD----D--GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYRAALDAAD 207 (339)
T ss_dssp HHHHHTTCCEEEEESCCS----S--SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCEEEEeecCC----C--CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHHHHHHHCC
Confidence 345567899888743211 1 122 45667777778888898888999999998553 334556788999999998
Q ss_pred ceeee-eeecCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEE
Q 003054 87 TRVPY-RSVISPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 149 (852)
Q Consensus 87 ~~v~~-~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~ 149 (852)
+.... ........+..+-...+.++.+ ..+++|+. .+...+..++++++++|+..|+-+-|+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~disvv 272 (339)
T 3h5o_A 208 CRDAGLEWLDPQPSSMQMGADMLDRALAERPDCDALFC-CNDDLAIGALARSQQLGIAVPERLAIA 272 (339)
T ss_dssp CCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred CCCCChheEecCCCCHHHHHHHHHHHHcCCCCCcEEEE-CChHHHHHHHHHHHHcCCCCCCCEEEE
Confidence 73211 1111212223333444555443 35777764 566788999999999999766544333
No 149
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=94.42 E-value=0.07 Score=55.40 Aligned_cols=136 Identities=10% Similarity=0.148 Sum_probs=86.5
Q ss_pred HHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCC-cccccHHHHHHHHHhC
Q 003054 7 IQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQ-YGEEMIPSLTDALQAI 85 (852)
Q Consensus 7 ~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~-~G~~~~~~l~~~l~~~ 85 (852)
...+.+.++|+|......+.. ..+ .+..++..-++.+++++.+.|-++++++..... ......+.|.+++++.
T Consensus 92 ~~~~~~~~iPvV~~~~~~~~~---~~~---~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~~~l~~~ 165 (298)
T 3tb6_A 92 YLNLEKNGIPFAMINASYAEL---AAP---SFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFIQAHRER 165 (298)
T ss_dssp HHHHHHTTCCEEEESSCCTTC---SSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCEEEEecCcCCC---CCC---EEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHHHHHHHc
Confidence 344566799999876543221 222 345677778888899998889999999985433 3456678899999999
Q ss_pred CceeeeeeecCCCCChH--HHHHHHHHhhcC--C--ceEEEEEeChhhHHHHHHHHHHcCCcccceEEEE
Q 003054 86 DTRVPYRSVISPLATDD--QIEKELYKLFTM--Q--TRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 149 (852)
Q Consensus 86 g~~v~~~~~~~~~~~~~--d~~~~l~~l~~~--~--~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~ 149 (852)
|+++.....+.....+. .....+.++.+. . +++|+. .+...+..++++++++|+..++-+-|+
T Consensus 166 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vv 234 (298)
T 3tb6_A 166 ELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAILC-YNDEIALKVIDMLREMDLKVPEDMSIV 234 (298)
T ss_dssp TCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEEC-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred CCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEEE-eCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 98754332222111011 113344444432 2 677664 466778899999999999765444443
No 150
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=94.37 E-value=0.2 Score=55.29 Aligned_cols=106 Identities=12% Similarity=0.111 Sum_probs=63.9
Q ss_pred HHHH-HhcCC--eEEEE-eCchHH----HHHHhcCCCCc---ceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHH
Q 003054 573 VKML-IKRGD--NVGYQ-KGSFVL----GILKQLGFDER---KLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLI 641 (852)
Q Consensus 573 l~dL-~~~~~--~vg~~-~~s~~~----~~l~~~~~~~~---~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~ 641 (852)
++|| .+.|+ +||+. .++... .+|++.+++.. +++.+ .+.+...+|.+|+ ++|++...++.....
T Consensus 153 i~dL~k~~GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~DV~~v~~-~~~~~~~aL~~G~----iDa~~~~eP~~~~a~ 227 (429)
T 2i49_A 153 IKGFNKTNGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDTDIDLLAV-PPAETVQGMRNGT----MDAFSTGDPWPYRIV 227 (429)
T ss_dssp HHTHHHHHSSCCEEEESSTTSHHHHHHHHHHHHTTCCTTTTSEEEEC-CHHHHHHHHHHTC----CCEEEEETTHHHHHH
T ss_pred HHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCcEEEEEC-ChHHHHHHHHcCC----ccEEEeccchHHHHH
Confidence 6888 65577 99996 566543 34556677643 34444 6678999999999 999998877776655
Q ss_pred hhcCCceEe-ecccccc-cceEEEecCC----CC-----chhhHHHHHHhccc
Q 003054 642 GQYCSKYAM-IEPKFKT-AGFGFVFPLH----SP-----LVHDVSKAILNVTE 683 (852)
Q Consensus 642 ~~~~~~~~~-v~~~~~~-~~~~~~~~k~----sp-----l~~~in~~il~l~e 683 (852)
.+....... .++.... ....+++++. .| ++..+.++...+.+
T Consensus 228 ~~g~g~~~~~~~~~~~~~~~~vl~~~~~~~~~~Pe~v~~~~~A~~~A~~~~~~ 280 (429)
T 2i49_A 228 TENIGYMAGLTAQIWPYHPEEYLAIRADWVDKNPKATKALLKGIMEAQQWIDD 280 (429)
T ss_dssp HTTSCEEEEEHHHHSTTCCCCEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHTS
T ss_pred HCCCCEEEEechHhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 543221111 2222222 2345666653 34 44455555555554
No 151
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=94.25 E-value=0.19 Score=52.71 Aligned_cols=129 Identities=7% Similarity=-0.004 Sum_probs=83.4
Q ss_pred HHHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHH-HcCCcEEEEEEEeCC--cccccHHHHHHHH
Q 003054 6 IIQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIK-AFGWREAVPIYVDNQ--YGEEMIPSLTDAL 82 (852)
Q Consensus 6 v~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~-~~gw~~vaii~~d~~--~G~~~~~~l~~~l 82 (852)
....+.+.++|+|......+. .. ....+..++...++.+++++. ..|-+++++|..+.. ......+.|++++
T Consensus 75 ~~~~~~~~~iPvV~~~~~~~~---~~--~~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~~l 149 (313)
T 3m9w_A 75 VVKEAKQEGIKVLAYDRMIND---AD--IDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVL 149 (313)
T ss_dssp HHHHHHTTTCEEEEESSCCTT---SC--CSEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCeEEEECCcCCC---CC--ceEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHHHHH
Confidence 344566789999997654322 11 113345677778888888876 899999999984332 3455678889999
Q ss_pred HhC----CceeeeeeecCCCCChHHHHHHHHHhhc---CCceEEEEEeChhhHHHHHHHHHHcCCc
Q 003054 83 QAI----DTRVPYRSVISPLATDDQIEKELYKLFT---MQTRVFILHMLPSLGSRIFEKANEIGLM 141 (852)
Q Consensus 83 ~~~----g~~v~~~~~~~~~~~~~d~~~~l~~l~~---~~~~viv~~~~~~~~~~i~~~a~~~G~~ 141 (852)
++. ++++..... ..+.+..+-...+.++.+ ..+++|+. .+...+..++++++++|+.
T Consensus 150 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 150 KPYVDSGKIKVVGDQW-VDGWLPENALKIMENALTANNNKIDAVVA-SNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp HHHHHTTSEEEEEEEE-CGGGCHHHHHHHHHHHHHHTTTCCCEEEE-SSHHHHHHHHHHHHTTTCT
T ss_pred HhhccCCCEEEEeecc-CCCcCHHHHHHHHHHHHHhCCCCeeEEEE-CCCchHHHHHHHHHHcCCC
Confidence 887 566654332 111223333444444443 35677654 4666788999999999985
No 152
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=94.25 E-value=0.25 Score=53.12 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=45.6
Q ss_pred CCcCCHHHHHhcCCeEEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHH
Q 003054 568 PTITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYM 637 (852)
Q Consensus 568 ~~i~sl~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~ 637 (852)
.+|++++||. |++|.+. +......++.++..+ +.. ...|.+.+|++|. +|+.....+..
T Consensus 164 ~pI~s~~DLk--G~kirv~-~~~~~~~~~~lGa~p---v~~-~~~e~~~ALq~G~----VDg~~~~~~~~ 222 (361)
T 2zzv_A 164 KPIRRFEDFK--GVKLRVP-GGMIAEVFAAAGAST---VLL-PGGEVYPALERGV----IDAADFVGPAV 222 (361)
T ss_dssp SCCCSGGGGT--TCEEECC-SHHHHHHHHHTTCEE---ECC-CGGGHHHHHHTTS----CSEEECSCHHH
T ss_pred CCcCChHHhC--CCEEeec-CHHHHHHHHHcCCee---eec-ChHHHHHHHHcCC----cceeecCCcch
Confidence 5799999997 9999887 556667788877532 222 5678899999999 99998776655
No 153
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=94.19 E-value=0.22 Score=52.01 Aligned_cols=121 Identities=11% Similarity=0.056 Sum_probs=78.0
Q ss_pred CCCccEEeeecCCCCCC----C--CCCCceEeccCCchhHHHHHHHHHHHc--CCcEEEEEEEeCC-cccccHHHHHHHH
Q 003054 12 KSQVPILSFSATSPSLT----S--IRSPYFFRGSLNDSSQAGAITAIIKAF--GWREAVPIYVDNQ-YGEEMIPSLTDAL 82 (852)
Q Consensus 12 ~~~vP~Is~~ats~~lt----~--~~~py~fR~~p~d~~~~~aia~~l~~~--gw~~vaii~~d~~-~G~~~~~~l~~~l 82 (852)
..++|+|..+...+... . ...+++..+. +...+...++++.+. |.|++++|+.+.. .+....+.+++++
T Consensus 88 ~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~r~~g~~~al 165 (302)
T 2qh8_A 88 TKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSA 165 (302)
T ss_dssp CSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred CCCcCEEEEecCCHhhcCccccccCCCCCEEEEE--CCcCHHHHHHHHHHhCCCCcEEEEEecCCCcchHHHHHHHHHHH
Confidence 67999998876554321 0 1124444443 233456667888776 9999999995543 3667788999999
Q ss_pred HhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCC
Q 003054 83 QAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGL 140 (852)
Q Consensus 83 ~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~ 140 (852)
++.|+++...... +..+....+.++. .++|+|++..+. .+...++.+.+.|.
T Consensus 166 ~~~gi~~~~~~~~----~~~~~~~~~~~l~-~~~dai~~~~D~-~a~g~~~~l~~~~~ 217 (302)
T 2qh8_A 166 AKHGIKLVEATAL----KSADVQSATQAIA-EKSDVIYALIDN-TVASAIEGMIVAAN 217 (302)
T ss_dssp HHTTCEEEEEECS----SGGGHHHHHHHHG-GGCSEEEECSCH-HHHTTHHHHHHHHH
T ss_pred HHcCCEEEEEecC----ChHHHHHHHHHHh-ccCCEEEECCcH-hHHHHHHHHHHHHH
Confidence 9999988654332 2456777888887 488998876443 33333444444443
No 154
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=93.93 E-value=0.48 Score=45.80 Aligned_cols=68 Identities=15% Similarity=0.136 Sum_probs=47.7
Q ss_pred eeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEeeeeeecCcceeeeccccccccceEEEEE
Q 003054 378 YCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVP 457 (852)
Q Consensus 378 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~ 457 (852)
+-.+++..+.++.+ .+++++... +..++.++|.+|++|+++...... ...+. ..++....++++++
T Consensus 18 ~l~~~l~~~~~~~P-~i~i~i~~~---------~~~~~~~~l~~g~~Dl~i~~~~~~---~~~~~-~~~l~~~~~~~v~~ 83 (219)
T 3jv9_A 18 LLPKLIVSLRRTAP-KMPLMLEEN---------YTHTLTESLKRGDVDAIIVAEPFQ---EPGIV-TEPLYDEPFFVIVP 83 (219)
T ss_dssp HHHHHHHHHHHHST-TCCEEEEEE---------CHHHHHHHHHHTSSSEEEEESSCC---CTTEE-EEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCC-CcEEEEEeC---------CcHHHHHHHHcCCCCEEEEcCCCC---CCCee-EEEeeeceEEEEEe
Confidence 45678888888876 356666543 467899999999999998644222 22232 46677888888888
Q ss_pred cc
Q 003054 458 IK 459 (852)
Q Consensus 458 ~~ 459 (852)
..
T Consensus 84 ~~ 85 (219)
T 3jv9_A 84 KG 85 (219)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 155
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=93.90 E-value=0.11 Score=42.50 Aligned_cols=52 Identities=12% Similarity=0.050 Sum_probs=46.1
Q ss_pred ccchhHHHHHHHhhhcc-c-cccccchhhHHHHHHHHHHHHHHHHhhhhcccee
Q 003054 510 QVGTSFWFSFSTMVFSQ-R-ERVISNLARIVVIVWCFVVLILTQSYTASLTSLL 561 (852)
Q Consensus 510 ~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~L 561 (852)
++.+++|+++.++...| + ..|.+..+|++.++|.++++.+.+...+.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999877 4 4678999999999999999999999999888764
No 156
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=93.84 E-value=0.22 Score=51.15 Aligned_cols=127 Identities=9% Similarity=0.032 Sum_probs=85.8
Q ss_pred cCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeC--CcccccHHHHHHHHHhCCc
Q 003054 10 GNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDN--QYGEEMIPSLTDALQAIDT 87 (852)
Q Consensus 10 ~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~--~~G~~~~~~l~~~l~~~g~ 87 (852)
+.+.++|+|.....+ ..+ +.+ .+..++..-+..+++++. .|.++++++.... .......+.|.+++++.|+
T Consensus 81 ~~~~~iPvV~~~~~~--~~~---~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~ 153 (277)
T 3hs3_A 81 NFHLNTPLVMYDSAN--IND---DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAMTAEASKLKI 153 (277)
T ss_dssp TCCCSSCEEEESCCC--CCS---SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred HHhCCCCEEEEcccc--cCC---CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCC
Confidence 456789999875530 111 223 566777777888888877 9999999998543 3456678889999999999
Q ss_pred eeeeeeecCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEE
Q 003054 88 RVPYRSVISPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 149 (852)
Q Consensus 88 ~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~ 149 (852)
++... .+. . +.+ ...+.++.+ ..+++|+. .+...+..++++++++|+..|+-+-|+
T Consensus 154 ~~~~~-~~~-~--~~~-~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di~vi 211 (277)
T 3hs3_A 154 DYLLE-ETP-E--NNP-YISAQSALNKSNQFDAIIT-VNDLYAAEIIKEAKRRNLKIPDDFQLV 211 (277)
T ss_dssp EEEEE-ECC-S--SCH-HHHHHHHHHTGGGCSEEEC-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred CCCCC-Ccc-C--Cch-HHHHHHHHcCCCCCCEEEE-CCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 87655 332 2 222 444455443 45677654 566678899999999999765444333
No 157
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=93.72 E-value=0.065 Score=45.50 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=50.6
Q ss_pred cccchhHHHHHHHhhhcc-c-cccccchhhHHHHHHHHHHHHHHHHhhhhccceeeeccc
Q 003054 509 QQVGTSFWFSFSTMVFSQ-R-ERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQL 566 (852)
Q Consensus 509 ~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~ 566 (852)
.++.+++||++.++...| + ..|.+..+|++.++|.++++.+.+...+.+++.++.+..
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~ 90 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 90 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 368899999999999877 3 367899999999999999999999999999998875544
No 158
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=93.60 E-value=0.75 Score=47.93 Aligned_cols=87 Identities=10% Similarity=-0.001 Sum_probs=54.3
Q ss_pred CCcCCHHHHHhcCCeEEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHH-HhhcCC
Q 003054 568 PTITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLL-IGQYCS 646 (852)
Q Consensus 568 ~~i~sl~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~-~~~~~~ 646 (852)
.+|++++||. |++|.+. ++.....++.++..+ +. -...|...+|++|. +|+.........-. ..+.++
T Consensus 129 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~~~lGa~p---v~-~~~~E~y~ALq~G~----vDg~~~~~~~~~~~~~~ev~k 197 (301)
T 2pfy_A 129 KPVAALADLK--GTRFRAY-SASTSHMAALMGAVP---TT-VQTPEVPQAFSTGV----IDAMLTSPATGVDSQAWDYVK 197 (301)
T ss_dssp SCCSSGGGGT--TCEEEEC-SHHHHHHHHHTTSEE---EE-CCGGGHHHHHHTTS----CSBEEECHHHHHHTTGGGTCC
T ss_pred CCCCCHHHhC--CCEEeec-ChhHHHHHHHcCCcc---ee-ccHHHHHHHHhcce----eeeEecCccccccccHHHHhh
Confidence 4799999997 9999886 666667788877532 22 25678999999999 99986554332211 111243
Q ss_pred ceEeecccccccceEEEecCC
Q 003054 647 KYAMIEPKFKTAGFGFVFPLH 667 (852)
Q Consensus 647 ~~~~v~~~~~~~~~~~~~~k~ 667 (852)
+...... ......+++++.
T Consensus 198 -~~~~~~~-~~~~~~~~~n~~ 216 (301)
T 2pfy_A 198 -YYYDAQA-FIPQSFVIANKR 216 (301)
T ss_dssp -EEEECCC-CCCEEEEEEEHH
T ss_pred -hhccccc-ccceeeEEEcHH
Confidence 3332222 233455667765
No 159
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=93.56 E-value=0.53 Score=51.54 Aligned_cols=143 Identities=11% Similarity=0.008 Sum_probs=91.6
Q ss_pred HHHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCc----ccccHHHHHHH
Q 003054 6 IIQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQY----GEEMIPSLTDA 81 (852)
Q Consensus 6 v~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~----G~~~~~~l~~~ 81 (852)
+...+.+.++|+|......+...+ .+.+-.+..++..-+..+++++.+.|-+++++|...... .....+.+.++
T Consensus 89 ~~~~l~~~~iPvV~i~~~~~~~~~--~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~Gf~~a 166 (412)
T 4fe7_A 89 IEQALADVDVPIVGVGGSYHLAES--YPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQL 166 (412)
T ss_dssp HHHHHTTCCSCEEEEEECCSSGGG--SCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCCEEEecCCcccccc--CCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHHHHHHH
Confidence 345567789999998764433211 123344566777788888899988999999999855432 45678889999
Q ss_pred HHhCCceeeeeeecCCC-CChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHHcCCcccc-eEEEEcC
Q 003054 82 LQAIDTRVPYRSVISPL-ATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKG-CVWIMTD 151 (852)
Q Consensus 82 l~~~g~~v~~~~~~~~~-~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~-~vwi~~~ 151 (852)
+++.|+........... .+..+-...+.++.+ ..+++|+ +.+...+..+++.+++.|+..++ ...++-|
T Consensus 167 l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~-~~nD~~A~g~~~al~~~G~~vP~disvig~D 239 (412)
T 4fe7_A 167 VAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTGII-AVTDARARHILQVCEHLHIPVPEKLCVIGID 239 (412)
T ss_dssp HTTSSSCCEEECCSCSSCSSHHHHHHHHHHHHHHSCTTEEEE-ESSHHHHHHHHHHHHHHTCCTTTTSEEEESS
T ss_pred HHHcCCCccccccccccccchhhHHHHHHHHHHhCCCCeEEE-EEecHHHHHHHHHHHHcCCCCCceEEEEeec
Confidence 99999764322211111 112233334444332 4567765 45677888999999999997554 3444444
No 160
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=93.56 E-value=0.24 Score=52.83 Aligned_cols=129 Identities=12% Similarity=0.021 Sum_probs=80.5
Q ss_pred hcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCC--cccccHHHHHHHHHhCC
Q 003054 9 LGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLTDALQAID 86 (852)
Q Consensus 9 i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~--~G~~~~~~l~~~l~~~g 86 (852)
.+.+.++|+|......+. ....+ .+..++..-+..++++|...|.+++++|..+.. ......+.|.+++++.|
T Consensus 140 ~l~~~~iPvV~i~~~~~~--~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g 214 (348)
T 3bil_A 140 DLQKQGMPVVLVDRELPG--DSTIP---TATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFKAACANSK 214 (348)
T ss_dssp HHHHC-CCEEEESSCCSC--C-CCC---EEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCEEEEcccCCC--CCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHcC
Confidence 344578999987553221 01222 344566666788888888889999999985432 34566788999999998
Q ss_pred ceeeeeeecCCCCChHHHHHHHHHhhcCC-ceEEEEEeChhhHHHHHHHHHHcCCcccceE
Q 003054 87 TRVPYRSVISPLATDDQIEKELYKLFTMQ-TRVFILHMLPSLGSRIFEKANEIGLMNKGCV 146 (852)
Q Consensus 87 ~~v~~~~~~~~~~~~~d~~~~l~~l~~~~-~~viv~~~~~~~~~~i~~~a~~~G~~~~~~v 146 (852)
++.... +..+.+..+-...+.++.+.. + + |++.+...+..+++++++.|+..|+-+
T Consensus 215 ~~~~~v--~~~~~~~~~~~~~~~~ll~~~~~-a-i~~~nD~~A~g~~~al~~~G~~vP~di 271 (348)
T 3bil_A 215 IGEQLV--FLGGYEQSVGFEGATKLLDQGAK-T-LFAGDSMMTIGVIEACHKAGLVIGKDV 271 (348)
T ss_dssp CCCCEE--ECCCSSHHHHHHHHHHHHHTTCS-E-EEESSHHHHHHHHHHHHHTTCCBTTTB
T ss_pred cCccEE--EcCCCCHHHHHHHHHHHHcCCCC-E-EEEcChHHHHHHHHHHHHcCCCCCCCe
Confidence 732211 121222333334455554433 5 4 445667778999999999999755433
No 161
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=93.54 E-value=0.74 Score=47.98 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=43.4
Q ss_pred CCcCCHHHHHhcCCeEEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechh
Q 003054 568 PTITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIP 635 (852)
Q Consensus 568 ~~i~sl~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~ 635 (852)
.+|++++||. |++|.+. ++.....++.++..+ +. -...|...+|++|. +|+......
T Consensus 128 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~~~lGa~p---v~-~~~~E~y~ALq~G~----vDg~~~~~~ 184 (301)
T 2pfz_A 128 RDIKQVSDMK--GLKWRAY-SPVTAKIAELVGAQP---VT-VQQAELAQAMATGV----IDSYMSSGS 184 (301)
T ss_dssp SCCSSGGGGT--TCEEEES-SHHHHHHHHHHTCEE---EE-CCGGGHHHHHHTTS----CSEEEECHH
T ss_pred CCCCChHHhc--CCEEecC-ChhHHHHHHHcCCcc---ee-cCHHHHHHHHhcCe----eeEEecCcc
Confidence 4799999997 9999886 666667788877532 22 25678999999999 999865543
No 162
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=93.47 E-value=0.013 Score=55.58 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=57.7
Q ss_pred HhhhhheecccCCCCCCCcccccchhHHHHHHHhhhcc-c-cccccchhhHHHHHHHHHHHHHHHHhhhhccceeeec
Q 003054 489 GFVVWVLEHRVNEDFRGPAGQQVGTSFWFSFSTMVFSQ-R-ERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQ 564 (852)
Q Consensus 489 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~ 564 (852)
++++|.+|+.. .++...++.+++||++.++...| + ..|.+..+|++.++|+++++++.+...+.+++.++..
T Consensus 50 a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 123 (166)
T 3pjs_K 50 SYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQ 123 (166)
T ss_dssp SSSSSSTTSSS----TTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSS
T ss_pred HHHHHHHhcCC----CCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555533 23344678999999999999877 3 4678999999999999999999999999999998743
No 163
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=93.40 E-value=0.29 Score=51.28 Aligned_cols=58 Identities=28% Similarity=0.237 Sum_probs=42.0
Q ss_pred cCCHHHHHhcCCeEEE-EeCchHH----HHHHhcCCCCcce--eecCCHhHHHHHhhcccccCceeEEEec
Q 003054 570 ITDVKMLIKRGDNVGY-QKGSFVL----GILKQLGFDERKL--VVYNSPEDCHELFQKGSVNGGIAAAFDE 633 (852)
Q Consensus 570 i~sl~dL~~~~~~vg~-~~~s~~~----~~l~~~~~~~~~~--~~~~~~~~~~~~l~~g~~~~g~~a~~~~ 633 (852)
+++++||. |+++++ ..|+..+ .++++.+.+...+ ..+.+..+.+.+|..|+ +++.+..
T Consensus 123 i~sl~dL~--g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~----vda~~~~ 187 (314)
T 1us5_A 123 IRTVADLK--GKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQDKR----ADALFYT 187 (314)
T ss_dssp CSSGGGGT--TSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHTTS----CSEEEEE
T ss_pred CCcHHHhC--CCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHHHcCC----ccEEEEc
Confidence 78999997 778887 5566443 3455566654433 36667888999999999 8888864
No 164
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=93.32 E-value=0.26 Score=51.24 Aligned_cols=145 Identities=10% Similarity=-0.006 Sum_probs=86.7
Q ss_pred HHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHH-HcCCc-----EEEEEE-EeC--CcccccHHH
Q 003054 7 IQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIK-AFGWR-----EAVPIY-VDN--QYGEEMIPS 77 (852)
Q Consensus 7 ~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~-~~gw~-----~vaii~-~d~--~~G~~~~~~ 77 (852)
...+.+.++|+|......+.......+.+..+..++...+..+++++. .+|-+ +++++. ... .......+.
T Consensus 75 ~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~~R~~G 154 (306)
T 8abp_A 75 VAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 154 (306)
T ss_dssp HHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHHHHHH
T ss_pred HHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHHHHHHH
Confidence 345667899999986533222111111333445666767777777753 44444 888886 332 234566788
Q ss_pred HHHHHHhCCce---eeeeeecCCCCChHHHHHHHHHhhcCC--ceE-EEEEeChhhHHHHHHHHHHcCCcccceEEEEcC
Q 003054 78 LTDALQAIDTR---VPYRSVISPLATDDQIEKELYKLFTMQ--TRV-FILHMLPSLGSRIFEKANEIGLMNKGCVWIMTD 151 (852)
Q Consensus 78 l~~~l~~~g~~---v~~~~~~~~~~~~~d~~~~l~~l~~~~--~~v-iv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~ 151 (852)
|.+++++.|.. +..... .+.+.++-...+.++.+.. +++ +|++.+...+..++++++++|+...+...++.|
T Consensus 155 f~~~l~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~di~vvG~D 232 (306)
T 8abp_A 155 SMDALKAAGFPEKQIYQVPT--KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 232 (306)
T ss_dssp HHHHHHHHTCCGGGEEEEEC--SSSSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGEEEEEES
T ss_pred HHHHHHhcCCCCcEEEeecc--CCCChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCCCceEEEEeC
Confidence 99999998752 332221 1223444555666666554 456 455667778899999999999865334445544
Q ss_pred cc
Q 003054 152 GM 153 (852)
Q Consensus 152 ~~ 153 (852)
..
T Consensus 233 ~~ 234 (306)
T 8abp_A 233 GV 234 (306)
T ss_dssp SG
T ss_pred cH
Confidence 43
No 165
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=93.28 E-value=0.13 Score=45.10 Aligned_cols=55 Identities=15% Similarity=0.270 Sum_probs=48.0
Q ss_pred ccchhHHHHHHHhhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHhhhhccceeeec
Q 003054 510 QVGTSFWFSFSTMVFSQ-RE-RVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQ 564 (852)
Q Consensus 510 ~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~ 564 (852)
++.+++||++.++...| ++ .|.+..+|++.++|.++++.+.....+.+++.++..
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 105 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999877 33 678899999999999999999999999999887543
No 166
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=93.25 E-value=0.069 Score=55.74 Aligned_cols=134 Identities=11% Similarity=0.032 Sum_probs=84.1
Q ss_pred hcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCC--cccccHHHHHHHHHhCC
Q 003054 9 LGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLTDALQAID 86 (852)
Q Consensus 9 i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~--~G~~~~~~l~~~l~~~g 86 (852)
.+...++|+|......+... . +..+..++..-+..+++++.+.|.++++++..+.. ......+.+.+++++.|
T Consensus 87 ~~~~~~iPvV~~~~~~~~~~--~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g 161 (301)
T 3miz_A 87 ESGDVSIPTVMINCRPQTRE--L---LPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDAFRRTTSEFG 161 (301)
T ss_dssp CCTTCCCCEEEEEEECSSTT--S---SCEEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCCEEEECCCCCCCC--C---CCEEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHHHHHHHHHcC
Confidence 34567889888765432210 1 22345677777888888998899999999985443 34567788999999998
Q ss_pred ceeeeeeecCC---CCCh-HHH-HHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHHcCCcccceEEE
Q 003054 87 TRVPYRSVISP---LATD-DQI-EKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWI 148 (852)
Q Consensus 87 ~~v~~~~~~~~---~~~~-~d~-~~~l~~l~~--~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi 148 (852)
+++.....+.. +.+. ..+ ...+.++.+ ..+++|+. .+...+..++++++++|+..|+-+-|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di~v 229 (301)
T 3miz_A 162 LTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRPTAIMS-GNDEMAIQIYIAAMALGLRIPQDVSI 229 (301)
T ss_dssp CCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCCSEEEE-SSHHHHHHHHHHHHTTTCCHHHHCEE
T ss_pred CCCCcceEEEcCCCCcCccccHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeeE
Confidence 76532222111 1111 111 133444443 35777664 46667889999999999975543333
No 167
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=93.17 E-value=0.99 Score=46.53 Aligned_cols=103 Identities=12% Similarity=0.089 Sum_probs=59.1
Q ss_pred CCHHHHHhcCCeEEEE-eCc---hHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCC
Q 003054 571 TDVKMLIKRGDNVGYQ-KGS---FVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCS 646 (852)
Q Consensus 571 ~sl~dL~~~~~~vg~~-~~s---~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~ 646 (852)
-+++||. +.++... .+. ....++.+.++........++.+...+++..|. ..+++-+........ ...
T Consensus 186 ~~~~dL~--~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g~----Gia~lp~~~~~~~~~--~~~ 257 (306)
T 3fzv_A 186 VSLRDLC--LEPMILLDVQPSRTYFVSLFEELGLTPNIAFSSPSIEMVRGMVGQGF----GFSLLVTRPHSECTY--DGK 257 (306)
T ss_dssp ECHHHHT--TSCEEEECCTTHHHHHHHHHHHTTCCCCEEEEESCHHHHHHHHHTTS----CBEEECCCCSCSBCT--TSC
T ss_pred CCHHHHc--CCCEEEecCCcchHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHcCC----CEEEEeccccccccc--CCC
Confidence 4789997 4444443 332 233445566666656667889999999999998 455554432111110 111
Q ss_pred ceEee--cccccccceEEEecCCCCchhhHHHHHHhc
Q 003054 647 KYAMI--EPKFKTAGFGFVFPLHSPLVHDVSKAILNV 681 (852)
Q Consensus 647 ~~~~v--~~~~~~~~~~~~~~k~spl~~~in~~il~l 681 (852)
.+..+ ........++++.+++...-..+...+..+
T Consensus 258 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 294 (306)
T 3fzv_A 258 KVVMVDLAEPVSTSGLAAAWLKRAQLTKPARLFVDYC 294 (306)
T ss_dssp BEEEEEESSCCCBCCCEEEEETTSCCCHHHHHHHHHH
T ss_pred ceEEEECCCCCccceEEEEEeCCcccCHHHHHHHHHH
Confidence 24433 333445678899988866555555544443
No 168
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=93.05 E-value=0.15 Score=53.26 Aligned_cols=133 Identities=12% Similarity=0.053 Sum_probs=85.1
Q ss_pred HhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCC--cccccHHHHHHHHHhC
Q 003054 8 QLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLTDALQAI 85 (852)
Q Consensus 8 ~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~--~G~~~~~~l~~~l~~~ 85 (852)
..+.+.++|+|...... ... .+-.+..++..-+..+++++.+.|-++++++..+.. ......+.|.+++++.
T Consensus 100 ~~l~~~~iPvV~i~~~~---~~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~ 173 (305)
T 3huu_A 100 HLLNEFKVPYLIVGKSL---NYE---NIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDV 173 (305)
T ss_dssp HHHHHTTCCEEEESCCC---SST---TCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCEEEECCCC---ccc---CCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhHHHHHHHHHHHHHc
Confidence 44556799999875532 211 223346677777788888998889999999986543 3456788899999999
Q ss_pred CceeeeeeecCCCCChHHHHHHHHHh-hc--CCceEEEEEeChhhHHHHHHHHHHcCCcccce-EEEEcC
Q 003054 86 DTRVPYRSVISPLATDDQIEKELYKL-FT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGC-VWIMTD 151 (852)
Q Consensus 86 g~~v~~~~~~~~~~~~~d~~~~l~~l-~~--~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~-vwi~~~ 151 (852)
|+.+.. .+..+ .+.-...+.++ .+ ..+++|+ +.+...+..+++.++++|+..|+- ..++-|
T Consensus 174 g~~~~~--~~~~~--~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~di~vig~D 238 (305)
T 3huu_A 174 KISNDC--VVIKS--MNDLRDFIKQYCIDASHMPSVII-TSDVMLNMQLLNVLYEYQLRIPEDIQTATFN 238 (305)
T ss_dssp TCCCCE--EEECS--HHHHHHHC--------CCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred CCCccc--EEecC--cHHHHHHHHHhhhcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCcceEEEEEC
Confidence 987654 22211 21123344444 32 4667766 456778889999999999975543 344433
No 169
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=92.94 E-value=0.55 Score=47.85 Aligned_cols=133 Identities=8% Similarity=0.000 Sum_probs=81.0
Q ss_pred hcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHc--CCcEEEEEEEeCC--cccccHHHHHHHHHh
Q 003054 9 LGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAF--GWREAVPIYVDNQ--YGEEMIPSLTDALQA 84 (852)
Q Consensus 9 i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~--gw~~vaii~~d~~--~G~~~~~~l~~~l~~ 84 (852)
.+.+.++|+|......+. . +..-.+..++..-++.+++++.+. |-++++++..... ......+.|.+++++
T Consensus 77 ~~~~~~iPvV~i~~~~~~---~--~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~al~~ 151 (271)
T 2dri_A 77 MANQANIPVITLDRQATK---G--EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQAVAA 151 (271)
T ss_dssp HHHHTTCCEEEESSCCSS---S--CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCcEEEecCCCCC---C--ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHHHHhc
Confidence 344578999987543221 1 111234556666777788887555 5689999984332 335567889999999
Q ss_pred CCceeeeeeecCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcC
Q 003054 85 IDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTD 151 (852)
Q Consensus 85 ~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~ 151 (852)
.|+++..... .+.+...-...+.++.+ ..+++|+ +.+...+..+++++++.|+ .+...++-|
T Consensus 152 ~g~~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~g~--~dv~vvGfD 215 (271)
T 2dri_A 152 HKFNVLASQP--ADFDRIKGLNVMQNLLTAHPDVQAVF-AQNDEMALGALRALQTAGK--SDVMVVGFD 215 (271)
T ss_dssp HTCEEEEEEE--CTTCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTC--CSCEEEEEE
T ss_pred CCCEEEEecC--CCCCHHHHHHHHHHHHHhCCCccEEE-ECCCcHHHHHHHHHHHcCC--CCcEEEEec
Confidence 9987654321 11223333334444433 3467654 4566678999999999998 344444443
No 170
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=92.94 E-value=0.14 Score=53.82 Aligned_cols=61 Identities=13% Similarity=0.080 Sum_probs=52.3
Q ss_pred CcccccchhHHHHHHHhhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHhhhhccceeeeccc
Q 003054 506 PAGQQVGTSFWFSFSTMVFSQ-RE-RVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQL 566 (852)
Q Consensus 506 ~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~ 566 (852)
....++..++||++.++...| +. .|.+..+|++.++|+++++++.+..++.+++.++.+..
T Consensus 92 ~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~ 154 (333)
T 1p7b_A 92 QSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRA 154 (333)
T ss_dssp SSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678999999999999877 33 67888999999999999999999999999999876643
No 171
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=92.79 E-value=0.78 Score=49.28 Aligned_cols=87 Identities=21% Similarity=0.209 Sum_probs=54.3
Q ss_pred CCcCCHHHHHhcCCeEEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHh--hcC
Q 003054 568 PTITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIG--QYC 645 (852)
Q Consensus 568 ~~i~sl~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~--~~~ 645 (852)
.+|++++||. |++|.+. + .....++.++..+. .-...|...+|++|. +|+.....+...+-.. +-+
T Consensus 163 ~pI~s~~DLk--G~KiR~~-~-~~~~~~~~lGa~pv----~~~~~e~y~ALq~G~----VDg~~~~~p~~~~~~~~~ev~ 230 (365)
T 2hzl_A 163 REINTVADMQ--GLKMRVG-G-FAGKVMERLGVVPQ----QIAGGDIYPALEKGT----IDATEWVGPYDDEKLGFFKVA 230 (365)
T ss_dssp SCCCSTGGGT--TCEEECC-T-THHHHHHTTTCEEE----CCCTTSHHHHHHHTS----CSEECCSCHHHHHHHTGGGTC
T ss_pred CCCCChHHhC--CCEEecC-C-cHHHHHHHcCCcce----ecCHHHHHHHHhCCC----cceeeccCccchhhcChHHhh
Confidence 5799999997 9998887 5 45667887775432 224457889999999 9998865544432111 224
Q ss_pred CceEeecc-cccccceEEEecCC
Q 003054 646 SKYAMIEP-KFKTAGFGFVFPLH 667 (852)
Q Consensus 646 ~~~~~v~~-~~~~~~~~~~~~k~ 667 (852)
+ +..... ........+++++.
T Consensus 231 k-~~~~~~~~~~~~~~~~v~n~~ 252 (365)
T 2hzl_A 231 P-YYYYPGWWEGGPTVHFMFNKS 252 (365)
T ss_dssp C-EEEECBTTCSSCEEEEEEEHH
T ss_pred h-eeeccCccccccceEEEEcHH
Confidence 3 333333 12223456777775
No 172
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=92.73 E-value=0.23 Score=50.82 Aligned_cols=127 Identities=8% Similarity=0.017 Sum_probs=77.1
Q ss_pred hcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeC--CcccccHHHHHHHHHhCC
Q 003054 9 LGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDN--QYGEEMIPSLTDALQAID 86 (852)
Q Consensus 9 i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~--~~G~~~~~~l~~~l~~~g 86 (852)
.+.+.++|+|......+. . . .+..++...++.+++++.+.|.++++++..+. .......+.|.+++++.|
T Consensus 81 ~l~~~~iPvV~~~~~~~~---~--~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~ 152 (277)
T 3e61_A 81 TLTDHHIPFVFIDRINNE---H--N---GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIKYILDQQR 152 (277)
T ss_dssp HHHHC-CCEEEGGGCC-----------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHHHHHHC--
T ss_pred HHHcCCCCEEEEeccCCC---C--C---eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHcC
Confidence 455679999997654322 1 1 45667777888888898888999999998443 345667788999999999
Q ss_pred ceeeeeeecCCCCChHHHHHHHHHhh-cCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEE
Q 003054 87 TRVPYRSVISPLATDDQIEKELYKLF-TMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 149 (852)
Q Consensus 87 ~~v~~~~~~~~~~~~~d~~~~l~~l~-~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~ 149 (852)
+++.. ........+..+.. ++ ...+++|+. .+...+..++++++++|+..|+-+-|+
T Consensus 153 ~~~~~-~~~~~~~~~~~~~~----l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vi 210 (277)
T 3e61_A 153 IDYKM-LEATLLDNDKKFID----LIKELSIDSIIC-SNDLLAINVLGIVQRYHFKVPAEIQII 210 (277)
T ss_dssp -CEEE-EEGGGGGSHHHHHH----HHHHHTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred CCccc-eecCCCCHHHHHHH----hhcCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 87754 22111111222222 33 246777665 466778899999999999765444443
No 173
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=92.55 E-value=0.46 Score=48.60 Aligned_cols=133 Identities=16% Similarity=0.135 Sum_probs=84.0
Q ss_pred HHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCC-c--ccccHHHHHHHHH
Q 003054 7 IQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQ-Y--GEEMIPSLTDALQ 83 (852)
Q Consensus 7 ~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~-~--G~~~~~~l~~~l~ 83 (852)
...+.+.++|+|......+. ...+ .+..++..-++.+++++.+.|-++++++..+.. + .....+.|.++++
T Consensus 78 ~~~l~~~~iPvV~i~~~~~~---~~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~~l~ 151 (276)
T 3jy6_A 78 VQEILHQQMPVVSVDREMDA---CPWP---QVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGILAAAQ 151 (276)
T ss_dssp HHHHHTTSSCEEEESCCCTT---CSSC---EEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHHHTTCS
T ss_pred HHHHHHCCCCEEEEecccCC---CCCC---EEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHHHHHHH
Confidence 34456689999987553321 1222 345677778888889998899999999996543 2 3556677888887
Q ss_pred hCCceeeeeeecCCCCChHHHHHHHHHhhc-CCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEE
Q 003054 84 AIDTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 149 (852)
Q Consensus 84 ~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~ 149 (852)
+.+. +.... ........+......|+. ..+++|+. .+...+..+++.++++|+..|+-+-|+
T Consensus 152 ~~~~-~~~~~--~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vi 214 (276)
T 3jy6_A 152 DVDV-LEVSE--SSYNHSEVHQRLTQLITQNDQKTVAFA-LKERWLLEFFPNLIISGLIDNQTVTAT 214 (276)
T ss_dssp EEEE-EEECS--SSCCHHHHHHHHHHHHHSSSSCEEEEE-SSHHHHHHHSHHHHHSSSCCSSSEEEE
T ss_pred hCCc-EEEec--cccCCcHHHHHHHHHHhcCCCCcEEEE-eCcHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 7753 21111 000112334444444443 45677654 567788899999999999766544433
No 174
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=92.37 E-value=3.7 Score=42.20 Aligned_cols=103 Identities=7% Similarity=-0.070 Sum_probs=57.7
Q ss_pred cCCHHHHHhcCCeEEEEe-C----chHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhc
Q 003054 570 ITDVKMLIKRGDNVGYQK-G----SFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQY 644 (852)
Q Consensus 570 i~sl~dL~~~~~~vg~~~-~----s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~ 644 (852)
.-+++||. +.++.... + .....++.+.+.........++.+...+++..|. ..+++-.. .+.......
T Consensus 192 ~i~~~dL~--~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g~----Gia~lp~~-~~~~~~~~~ 264 (310)
T 2esn_A 192 APTLEGYL--AERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGSTD----FLLTAPRH-AARALAEAA 264 (310)
T ss_dssp SCCHHHHH--TSEEEEECTTCCSSCHHHHHHHHTTCCCEEEEEESCHHHHHHHHHTSS----CEEEEEHH-HHHHHHHHH
T ss_pred CCCHHHHh--cCCcEEEeCCCCcccHHHHHHHhCCCCeeEEEeCCCHHHHHHHHhcCC----eEEEcHHH-HHHHHhhcC
Confidence 34689997 55444332 2 2345667766665555567789999999999987 45555443 333332221
Q ss_pred CCceEee--cccccccceEEEecCCCCchhhHHHHHHhc
Q 003054 645 CSKYAMI--EPKFKTAGFGFVFPLHSPLVHDVSKAILNV 681 (852)
Q Consensus 645 ~~~~~~v--~~~~~~~~~~~~~~k~spl~~~in~~il~l 681 (852)
.+..+ ........++++.+++.+.-..+...+..+
T Consensus 265 --~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 301 (310)
T 2esn_A 265 --GLALYPAPFDIPPYVLRLYSHVQHVGRDAHAWMIGQL 301 (310)
T ss_dssp --TEEEECCSSCCCCEEEEEEEECC--CCHHHHHHHHHS
T ss_pred --CceEecCCCCCCCeeEEEEEeCcccCCHHHHHHHHHH
Confidence 13333 222334567888888766555444444333
No 175
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=92.33 E-value=0.24 Score=45.63 Aligned_cols=54 Identities=13% Similarity=0.271 Sum_probs=47.6
Q ss_pred ccchhHHHHHHHhhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHhhhhccceeee
Q 003054 510 QVGTSFWFSFSTMVFSQ-RE-RVISNLARIVVIVWCFVVLILTQSYTASLTSLLTV 563 (852)
Q Consensus 510 ~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~ 563 (852)
++.+++||++.++...| ++ .|.+..+|++.++|.++++.+.+...+.+++.+..
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 107 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQL 107 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999887 44 67899999999999999999999999998887653
No 176
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=92.31 E-value=3.7 Score=39.77 Aligned_cols=69 Identities=10% Similarity=0.025 Sum_probs=48.4
Q ss_pred EeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEeeeeeecCcceeeeccccccccceEEEE
Q 003054 377 GYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIV 456 (852)
Q Consensus 377 G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv 456 (852)
.+-..++..+.++.+ .++++... ++..+++++|.+|++|++++.. +.....+.+ .|+....+++++
T Consensus 21 ~~lp~~l~~f~~~~P-~v~l~l~~---------~~~~~l~~~L~~g~iDl~i~~~---~~~~~~l~~-~~l~~~~~~~v~ 86 (218)
T 2y7p_A 21 YFMPPLMEALAQRAP-HIQISTLR---------PNAGNLKEDMESGAVDLALGLL---PELQTGFFQ-RRLFRHRYVCMF 86 (218)
T ss_dssp HHHHHHHHHHHHHCT-TCEEEEEC---------CCTTTHHHHHHHTSSCEEEECC---TTCCTTEEE-EEEEEECEEEEE
T ss_pred HHHHHHHHHHHHHCC-CCEEEEEe---------CCcccHHHHHhCCCceEEEecC---CCCCcceeE-EEeeeccEEEEE
Confidence 345678888988887 35666544 2467899999999999998532 111223433 678888999999
Q ss_pred Ecc
Q 003054 457 PIK 459 (852)
Q Consensus 457 ~~~ 459 (852)
+..
T Consensus 87 ~~~ 89 (218)
T 2y7p_A 87 RKD 89 (218)
T ss_dssp ETT
T ss_pred cCC
Confidence 865
No 177
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=92.26 E-value=0.48 Score=50.36 Aligned_cols=64 Identities=19% Similarity=0.299 Sum_probs=45.2
Q ss_pred cCCHHHHHhcCCeEEEEeCchH----HHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHH
Q 003054 570 ITDVKMLIKRGDNVGYQKGSFV----LGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLL 640 (852)
Q Consensus 570 i~sl~dL~~~~~~vg~~~~s~~----~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~ 640 (852)
+++++||. |++||+. ++.. ..+|++.+.+...+.......+...++..|+ ++|.+...++....
T Consensus 103 ~~~~~dLk--GK~ig~~-~~~~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~al~~G~----vDa~~~~~p~~~~~ 170 (342)
T 4esw_A 103 TSDFQSLK--GKRIGYV-GEFGKIQVDELTKHYGMTPDDYVAVRCGMNVAKYILEGT----IDCGIGIECIQQVE 170 (342)
T ss_dssp CSSGGGGT--TCEEEES-SSHHHHHHHHHHGGGTCCGGGSEEEECGGGHHHHHHHTS----SSEEEEETTTHHHH
T ss_pred cCCHHHhC--CCEEEec-CCchHHHHHHHHHHcCCChhheEEecCCHHHHHHHHcCC----CCEEEEeccchHHH
Confidence 67899997 9999984 4433 3445667777766666555556778999999 99988766554443
No 178
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=92.24 E-value=0.33 Score=51.45 Aligned_cols=136 Identities=7% Similarity=-0.002 Sum_probs=81.8
Q ss_pred hcCCCCccEEeeecCC-CCCCCCCCCceEeccCCchhHHHHHHHHHHH-cC-CcEEEEEEEeCC-cccccHHHHHHHHHh
Q 003054 9 LGNKSQVPILSFSATS-PSLTSIRSPYFFRGSLNDSSQAGAITAIIKA-FG-WREAVPIYVDNQ-YGEEMIPSLTDALQA 84 (852)
Q Consensus 9 i~~~~~vP~Is~~ats-~~lt~~~~py~fR~~p~d~~~~~aia~~l~~-~g-w~~vaii~~d~~-~G~~~~~~l~~~l~~ 84 (852)
.+.+.++|.|...... |.......+.+..+..++..-+..+++++.. +| .+++++|..+.. ......+.|.+++++
T Consensus 123 ~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~R~~Gf~~~l~~ 202 (342)
T 1jx6_A 123 HVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNR 202 (342)
T ss_dssp HHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhHHHHHHHHHHHh
Confidence 3445689988773332 2111011233344566777778888888766 57 999999974432 345567789999998
Q ss_pred CCc-eeeeeeecCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEE
Q 003054 85 IDT-RVPYRSVISPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 149 (852)
Q Consensus 85 ~g~-~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~ 149 (852)
.|. ++.. .+..+.+..+-...+.++.+ ..+++|+. .+...+..++++++++|+ .+...++
T Consensus 203 ~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~nd~~A~g~~~al~~~g~--~di~vvg 265 (342)
T 1jx6_A 203 DNNFELQS--AYYTKATKQSGYDAAKASLAKHPDVDFIYA-CSTDVALGAVDALAELGR--EDIMING 265 (342)
T ss_dssp HHCCEEEE--EECCCSSHHHHHHHHHHHHHHCCCCSEEEE-SSHHHHHHHHHHHHHHTC--TTSEEBC
T ss_pred CCCcEEEE--EecCCCCHHHHHHHHHHHHHhCCCccEEEE-CCChhHHHHHHHHHHcCC--CCcEEEE
Confidence 876 3322 22222223333444555443 34677664 556678889999999998 4333443
No 179
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=92.11 E-value=0.22 Score=51.74 Aligned_cols=60 Identities=17% Similarity=0.140 Sum_probs=51.5
Q ss_pred CCcccccchhHHHHHHHhhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHhhhhccceeeec
Q 003054 505 GPAGQQVGTSFWFSFSTMVFSQ-RE-RVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQ 564 (852)
Q Consensus 505 ~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~ 564 (852)
+....++..++||++.++...| +. .|.+..+|++.+++.++++++.+..++.+.+.++.+
T Consensus 77 ~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~ 138 (301)
T 1xl4_A 77 NARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP 138 (301)
T ss_dssp TSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445678999999999999877 33 678889999999999999999999999999988654
No 180
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=92.04 E-value=1.2 Score=47.38 Aligned_cols=130 Identities=7% Similarity=-0.017 Sum_probs=81.1
Q ss_pred cCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCC--cccccHHHHHHHHHhCCc
Q 003054 10 GNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLTDALQAIDT 87 (852)
Q Consensus 10 ~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~--~G~~~~~~l~~~l~~~g~ 87 (852)
+...++|+|...... ....+ .+..++..-+..+++++...|.+++++|..+.. ......+.|.+++++.|+
T Consensus 138 ~~~~~iPvV~i~~~~----~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi 210 (349)
T 1jye_A 138 AACTNVPALFLDVSD----QTPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQI 210 (349)
T ss_dssp HHTTTSCEEESSSCT----TSSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred HhhCCCCEEEEcccC----CCCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHcCC
Confidence 345789998875321 11223 234556666677778887789999999985433 245567889999999998
Q ss_pred eeeeeeecCCCCChHHHHHHHHHhhcC--CceEEEEEeChhhHHHHHHHHHHcCCcccceEEEE
Q 003054 88 RVPYRSVISPLATDDQIEKELYKLFTM--QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 149 (852)
Q Consensus 88 ~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~ 149 (852)
++..... .+.+..+-...+.++.+. .+++|+. .+...+..+++++++.|+..|+-+-|+
T Consensus 211 ~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~disvv 271 (349)
T 1jye_A 211 QPIAERE--GDWSAMSGFQQTMQMLNEGIVPTAMLV-ANDQMALGAMRAITESGLRVGADISVV 271 (349)
T ss_dssp CCSEEEE--CCSSHHHHHHHHHHHHHTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEEE
T ss_pred Ccccccc--CCCChHHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 6533211 111222222334444333 4777664 456678899999999999765444433
No 181
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=92.02 E-value=0.58 Score=46.93 Aligned_cols=89 Identities=10% Similarity=0.015 Sum_probs=66.2
Q ss_pred chhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCC-------CChHHHHHHHHH-h-h
Q 003054 42 DSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPL-------ATDDQIEKELYK-L-F 112 (852)
Q Consensus 42 d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~-------~~~~d~~~~l~~-l-~ 112 (852)
-...+.++++.++..|.+||+++.. |.....+.+++.|++.|++|......... .+...+...+.+ + .
T Consensus 101 v~~~~~A~~~al~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 177 (240)
T 3ixl_A 101 CTTMSTAVLNGLRALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEA 177 (240)
T ss_dssp EEEHHHHHHHHHHHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHT
T ss_pred EECHHHHHHHHHHHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhc
Confidence 3346788889999999999999974 88888889999999999998765543221 134567777888 7 7
Q ss_pred cCCceEEEEEeChhhHHHHHH
Q 003054 113 TMQTRVFILHMLPSLGSRIFE 133 (852)
Q Consensus 113 ~~~~~viv~~~~~~~~~~i~~ 133 (852)
..++|+||+.|..-....++.
T Consensus 178 ~~~adaivL~CT~l~~l~~i~ 198 (240)
T 3ixl_A 178 APDSDGILLSSGGLLTLDAIP 198 (240)
T ss_dssp STTCSEEEEECTTSCCTTHHH
T ss_pred CCCCCEEEEeCCCCchhhhHH
Confidence 788999999887543333333
No 182
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=91.94 E-value=0.24 Score=56.88 Aligned_cols=120 Identities=8% Similarity=0.070 Sum_probs=69.7
Q ss_pred cccchhHHHHHHHhhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHhhhh-ccceeeecc----cCCC-cCCH-HHHHhc
Q 003054 509 QQVGTSFWFSFSTMVFSQ-RE-RVISNLARIVVIVWCFVVLILTQSYTAS-LTSLLTVQQ----LQPT-ITDV-KMLIKR 579 (852)
Q Consensus 509 ~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~v~~~w~~~~lil~~~Yta~-L~s~Lt~~~----~~~~-i~sl-~dL~~~ 579 (852)
.++..++||++.++...| ++ .|.+..+|++.++|+++++.+.....+. ++++++... .... .... +.+
T Consensus 50 ~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 126 (565)
T 4gx0_A 50 YSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDT--- 126 (565)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTTC---
T ss_pred CchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc---
Confidence 368999999999999877 33 5788889999999999999888877776 444443221 1111 1111 222
Q ss_pred CCeEEEE-eCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcc-cccCceeEEEechh
Q 003054 580 GDNVGYQ-KGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKG-SVNGGIAAAFDEIP 635 (852)
Q Consensus 580 ~~~vg~~-~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g-~~~~g~~a~~~~~~ 635 (852)
...+.+. .|.+.....+.+......++..+..++..+.+.+. . +.++..+..
T Consensus 127 ~~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~----~~~i~Gd~~ 180 (565)
T 4gx0_A 127 RGHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEG----FKVVYGSPT 180 (565)
T ss_dssp CSCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCS----SEEEESCTT
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcC----CeEEEeCCC
Confidence 1223332 34444444444322333455666555555555544 3 555555543
No 183
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=91.90 E-value=1.9 Score=41.18 Aligned_cols=68 Identities=19% Similarity=0.176 Sum_probs=46.6
Q ss_pred eeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEeeeeeecCcceeeeccccccccceEEEEE
Q 003054 378 YCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVP 457 (852)
Q Consensus 378 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~ 457 (852)
+-.+++..+.++.+ .++++... ++..++..+|.+|++|+++.... .....+. +.++....++++++
T Consensus 19 ~l~~~l~~f~~~~P-~i~i~l~~---------~~~~~l~~~l~~g~~Dl~i~~~~---~~~~~l~-~~~l~~~~~~~v~~ 84 (209)
T 2ql3_A 19 ILPSMLYAFTAEYP-RASVEFRE---------DTQNRLRTQLEGGELDVAIVYDL---DLSPEWQ-TVPLMTREPMVVLG 84 (209)
T ss_dssp THHHHHHHHHHHCT-TEEEEEEE---------CCHHHHHHHHHTTSCSEEEEESS---SCCTTEE-EEEEEEECCEEEEE
T ss_pred hHHHHHHHHHHHCC-CceEEEEE---------CcHHHHHHHHHcCCccEEEEecC---CCCCCce-EEEeecCceEEEEe
Confidence 34688899999987 35666554 25788999999999999875321 1112222 35677788888888
Q ss_pred cc
Q 003054 458 IK 459 (852)
Q Consensus 458 ~~ 459 (852)
..
T Consensus 85 ~~ 86 (209)
T 2ql3_A 85 AE 86 (209)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 184
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=91.73 E-value=0.71 Score=45.17 Aligned_cols=69 Identities=9% Similarity=0.053 Sum_probs=41.4
Q ss_pred HHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCc-ccEEEeeeeeecC---cceeee--ccccccccceE
Q 003054 380 VDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGE-FDAVVGDITIVFN---RSNYVD--FTLPYTESGVS 453 (852)
Q Consensus 380 ~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~-~D~~~g~~~it~~---r~~~vd--ft~p~~~~~~~ 453 (852)
-++++.+.++-|.+ +++.. ++-..++.+|.+|+ +|+++..-....+ ....+. -..|+....++
T Consensus 15 ~~~~~~F~~~p~i~--v~~~~---------~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 83 (231)
T 1atg_A 15 EQLAGQFAKQTGHA--VVISS---------GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLV 83 (231)
T ss_dssp HHHHHHHHHHHCCC--EEEEE---------ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEE
T ss_pred HHHHHHHHhccCCe--EEEEE---------CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEE
Confidence 35777777775654 44433 23578999999998 9998653211111 111111 24677788888
Q ss_pred EEEEcc
Q 003054 454 MIVPIK 459 (852)
Q Consensus 454 ~vv~~~ 459 (852)
+++++.
T Consensus 84 lv~~~~ 89 (231)
T 1atg_A 84 LWSAKP 89 (231)
T ss_dssp EEESST
T ss_pred EEEcCC
Confidence 888854
No 185
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=91.66 E-value=0.27 Score=48.79 Aligned_cols=73 Identities=8% Similarity=0.203 Sum_probs=57.6
Q ss_pred HHHhhhhheecccCCCCCCCcccccchhHHHHHHHhhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHhhhhccceeee
Q 003054 487 FIGFVVWVLEHRVNEDFRGPAGQQVGTSFWFSFSTMVFSQ-RE-RVISNLARIVVIVWCFVVLILTQSYTASLTSLLTV 563 (852)
Q Consensus 487 ~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~ 563 (852)
+.+++++.+|+..+ ++...++.+++|+++.++...| ++ .|.+..+|++.++++++++.+.+...+.+++.++.
T Consensus 146 ~~~~~~~~~e~~~~----~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 146 YGAFAIYIVEYPDP----NSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHTTSSST----TCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCc----CCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677776321 2234589999999999999877 44 67899999999999999999999999999887753
No 186
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=91.44 E-value=1.4 Score=46.32 Aligned_cols=136 Identities=11% Similarity=0.093 Sum_probs=77.5
Q ss_pred HHHhcCCC-CccEEeeecCCCCCCCCCCCceEeccCCchhHHHHH----HHHHHHcCC-cEEEEEEEe-CCcccccHHHH
Q 003054 6 IIQLGNKS-QVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAI----TAIIKAFGW-REAVPIYVD-NQYGEEMIPSL 78 (852)
Q Consensus 6 v~~i~~~~-~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~ai----a~~l~~~gw-~~vaii~~d-~~~G~~~~~~l 78 (852)
+..++.++ ++|++......+ . .+.+-... .+..++..+ ++++.+.|. ++|++|... ..........|
T Consensus 77 ~~~~a~~~p~~p~v~id~~~~---~--~~~~~~v~-~d~~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~~~r~~Gf 150 (318)
T 2fqx_A 77 VIETSARFPKQKFLVIDAVVQ---D--RDNVVSAV-FGQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMPLFEAGF 150 (318)
T ss_dssp HHHHHHHCTTSCEEEESSCCC---S--CTTEEEEE-ECHHHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTTHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEcCccC---C--CCCEEEEE-echHHHHHHHHHHHHHHhccCCCcEEEEEeCcccHHHHHHHHHH
Confidence 34444443 788887654221 0 12222222 244455544 466667787 899999743 23344557788
Q ss_pred HHHHHhCCceeeeeeecCCCC-ChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEE
Q 003054 79 TDALQAIDTRVPYRSVISPLA-TDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIM 149 (852)
Q Consensus 79 ~~~l~~~g~~v~~~~~~~~~~-~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~ 149 (852)
.+.+++.|..+.....+.-+. +...-.....++.+.++|+|+. .....+..++++++++|+. +.-++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~-~~d~~a~Gv~~a~~e~g~~-P~dv~vi 220 (318)
T 2fqx_A 151 EAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQ-VAGGTGNGVIKEARDRRLN-GQDVWVI 220 (318)
T ss_dssp HHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEE-ECGGGHHHHHHHHHHHHHT-TCCCEEE
T ss_pred HHHHHHHCCCCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEE-CCCCCchHHHHHHHhhhhc-cCCcEEE
Confidence 899998886543332232111 1122233445555567998664 4556788889999999987 4434443
No 187
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=91.40 E-value=6.3 Score=38.38 Aligned_cols=68 Identities=10% Similarity=0.232 Sum_probs=47.4
Q ss_pred eeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEeeeeeecCcceeeeccccccccceEEEEE
Q 003054 378 YCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVP 457 (852)
Q Consensus 378 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~ 457 (852)
+-..++..+.++.+ .+++++... +..+++.+|.+|++|+++..... ....+. +.++....++++++
T Consensus 44 ~l~~~l~~f~~~~P-~v~l~~~~~---------~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l~-~~~l~~~~~~~v~~ 109 (238)
T 2hxr_A 44 FIGPLMADFYARYP-SITLQLQEM---------SQEKIEDMLCRDELDVGIAFAPV---HSPELE-AIPLLTESLALVVA 109 (238)
T ss_dssp THHHHHHHHHHHCT-TSCEEEEEC---------CHHHHHHHHHTTSCSEEEEESSC---CCTTEE-EEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCC-CcEEEEEEC---------CHHHHHHHHHcCCCcEEEEcCCC---Ccccce-eeeeccCcEEEEEc
Confidence 44678888999887 366666552 46789999999999999863221 112232 35777888888888
Q ss_pred cc
Q 003054 458 IK 459 (852)
Q Consensus 458 ~~ 459 (852)
..
T Consensus 110 ~~ 111 (238)
T 2hxr_A 110 QH 111 (238)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 188
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=91.27 E-value=4.7 Score=39.19 Aligned_cols=181 Identities=12% Similarity=0.076 Sum_probs=108.2
Q ss_pred EeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEeeeeeecCcceeeeccccccccceEEEE
Q 003054 377 GYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIV 456 (852)
Q Consensus 377 G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv 456 (852)
.+-.+++..+.++.+ .+++++.. ++..+++++|.+|++|++++.... .....+. ..++....+++++
T Consensus 27 ~~l~~~l~~f~~~~P-~v~l~l~~---------~~~~~~~~~l~~g~~Dl~i~~~~~--~~~~~l~-~~~l~~~~~~~v~ 93 (228)
T 2fyi_A 27 YSLPEVIKAFRELFP-EVRLELIQ---------GTPQEIATLLQNGEADIGIASERL--SNDPQLV-AFPWFRWHHSLLV 93 (228)
T ss_dssp HTHHHHHHHHHHHCT-TEEEEEEE---------CCHHHHHHHHHHTSCSEEEESSSS--TTCTTEE-EEEEEEECEEEEE
T ss_pred HHHHHHHHHHHHHCC-CcEEEEEe---------CCHHHHHHHHHcCCccEEEEeccc--CCCCCce-EEEeeecceEEEe
Confidence 344688899999987 36666654 357899999999999998753111 1112232 3567778888888
Q ss_pred EccCCCCCCceEeecccchhHHHHHHHHHHHHHhhhhheecccCCCCCCCcccccchhHHHHHHHhhhccccccccchhh
Q 003054 457 PIKDSKKRNAWVFLQPLTWDLWVTCFCFFIFIGFVVWVLEHRVNEDFRGPAGQQVGTSFWFSFSTMVFSQRERVISNLAR 536 (852)
Q Consensus 457 ~~~~~~~~~~~~~l~PF~~~lW~~i~~~~i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R 536 (852)
+......
T Consensus 94 ~~~hpla------------------------------------------------------------------------- 100 (228)
T 2fyi_A 94 PHDHPLT------------------------------------------------------------------------- 100 (228)
T ss_dssp ETTCGGG-------------------------------------------------------------------------
T ss_pred cCCCCcc-------------------------------------------------------------------------
Confidence 8542110
Q ss_pred HHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCCe-EEEEeCchHH----HHHHhcCCCCcceeecCCH
Q 003054 537 IVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDN-VGYQKGSFVL----GILKQLGFDERKLVVYNSP 611 (852)
Q Consensus 537 ~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~-vg~~~~s~~~----~~l~~~~~~~~~~~~~~~~ 611 (852)
....-+++||. +.+ +....++... ..+.+.++........++.
T Consensus 101 ------------------------------~~~~i~~~dL~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (228)
T 2fyi_A 101 ------------------------------QISPLTLESIA--KWPLITYRQGITGRSRIDDAFARKGLLADIVLSAQDS 148 (228)
T ss_dssp ------------------------------TSSSCCHHHHT--TSCEEEECTTSTTHHHHHHHHHHTTCCCCEEEEESSH
T ss_pred ------------------------------ccCccCHHHHc--CCCeEEecCCccHHHHHHHHHHHcCCCcceEEEeCCH
Confidence 00134689997 444 4444444323 3445555555445667889
Q ss_pred hHHHHHhhcccccCceeEEEechhHHHHHHhhcCCceEeec--ccccccceEEEecCCCCchhhHHHHHHhccc
Q 003054 612 EDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCSKYAMIE--PKFKTAGFGFVFPLHSPLVHDVSKAILNVTE 683 (852)
Q Consensus 612 ~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~k~spl~~~in~~il~l~e 683 (852)
+...+++..|. ..+++-+... .... . ..+..+. .......++++.+++.++...+...+..+.+
T Consensus 149 ~~~~~lv~~G~----Gia~lp~~~~-~~~~--~-~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~ 214 (228)
T 2fyi_A 149 DVIKTYVALGL----GIGLVAEQSS-GEQE--E-ENLIRLDTRHLFDANTVWLGLKRGQLQRNYVWRFLELCNA 214 (228)
T ss_dssp HHHHHHHHHTS----CEEEEEGGGG-STTC--C-TTEEEECCTTTSCCEEEEEEEETTCCBCHHHHHHHHHHCS
T ss_pred HHHHHHHHhCC----CEEEeehHhh-hhcc--c-CCeEEEECCCcccceEEEEEEeCCCcCCHHHHHHHHHHHH
Confidence 99999999998 4556654322 1111 1 1244432 2223446788888887776666666655544
No 189
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=90.99 E-value=0.16 Score=54.10 Aligned_cols=125 Identities=11% Similarity=0.039 Sum_probs=73.6
Q ss_pred ccchhHHHHHHHhhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHHHHHhcCCeEEEEe
Q 003054 510 QVGTSFWFSFSTMVFSQ-RE-RVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVKMLIKRGDNVGYQK 587 (852)
Q Consensus 510 ~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~dL~~~~~~vg~~~ 587 (852)
++.+++||++.++...| +. .|.+..+|++.++|.++++++.+...+.+++.++.......... ....+ ...+.+..
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~viI~G 122 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGL-IDVAK-SRHVVICG 122 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-------------------CEEEEES
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcc-cCCEEEEC
Confidence 67899999999999877 33 67888999999999999999999999999999987655432221 11211 22344433
Q ss_pred -CchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHh
Q 003054 588 -GSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIG 642 (852)
Q Consensus 588 -~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~ 642 (852)
|..-....+.+.-... ++..+..++..+ +.... +.++..+......+.+
T Consensus 123 ~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~----~~~i~gd~~~~~~L~~ 172 (336)
T 1lnq_A 123 WSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSG----ANFVHGDPTRVSDLEK 172 (336)
T ss_dssp CCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTT----CEEEESCTTSHHHHHH
T ss_pred CcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCC----cEEEEeCCCCHHHHHh
Confidence 3333333333322233 556666555566 54432 6777776554444433
No 190
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=90.97 E-value=2.9 Score=43.00 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=47.3
Q ss_pred eeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEeeeeeecCcceeeeccccccccceEEEEE
Q 003054 378 YCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVP 457 (852)
Q Consensus 378 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~ 457 (852)
+...++..+.++.+ .+++++... +.++++.+|.+|++|+++....... ....+. ..|+....++++++
T Consensus 106 ~l~~~l~~f~~~~P-~i~i~l~~~---------~~~~~~~~l~~g~~Dlai~~~~~~~-~~~~l~-~~~L~~~~~~~v~~ 173 (305)
T 3fxq_A 106 ALPLALASFAREFP-DVTVNVRDG---------MYPAVSPQLRDGTLDFALTAAHKHD-IDTDLE-AQPLYVSDVVIVGQ 173 (305)
T ss_dssp HHHHHHHHHHHHCT-TCEEEEEEC---------CTTTTHHHHHHTSSSEEEEECCGGG-SCTTEE-EEEEEECCEEEEEE
T ss_pred HHHHHHHHHHHHCC-CCEEEEEEC---------CHHHHHHHHHcCCCCEEEecCCCCC-CccCee-EEEeecCcEEEEEc
Confidence 45678888988887 356666552 3567899999999999986432211 011222 46777888899988
Q ss_pred cc
Q 003054 458 IK 459 (852)
Q Consensus 458 ~~ 459 (852)
..
T Consensus 174 ~~ 175 (305)
T 3fxq_A 174 RQ 175 (305)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 191
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=90.79 E-value=0.58 Score=50.20 Aligned_cols=130 Identities=8% Similarity=0.058 Sum_probs=82.8
Q ss_pred hcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEe-------------------CC
Q 003054 9 LGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVD-------------------NQ 69 (852)
Q Consensus 9 i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d-------------------~~ 69 (852)
.+.+.++|+|...... .....++ +..++..-+..++++|.+.|-+++++|... ..
T Consensus 146 ~l~~~~iPvV~i~~~~---~~~~~~~---V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~~~~~~~~~ 219 (366)
T 3h5t_A 146 AIRARGLPAVIADQPA---REEGMPF---IAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRERLENAQYQ 219 (366)
T ss_dssp HHHHHTCCEEEESSCC---SCTTCCE---EEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHHHHHTCCCT
T ss_pred HHHHCCCCEEEECCcc---CCCCCCE---EEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCccccccccccccc
Confidence 3445689988875422 1122333 456777777888889988999999999832 22
Q ss_pred cccccHHHHHHHHHhCCceeeeeeecC-CCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHHcCCcccce
Q 003054 70 YGEEMIPSLTDALQAIDTRVPYRSVIS-PLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGC 145 (852)
Q Consensus 70 ~G~~~~~~l~~~l~~~g~~v~~~~~~~-~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~ 145 (852)
....-.+.|.+++++.|+.+.....+. ...+..+-...+.++.+ ..|++||. .+...+..++++++++|+..|+-
T Consensus 220 ~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~vP~d 297 (366)
T 3h5t_A 220 VQRDRVRGAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPDLTAVLC-TVDALAFGVLEYLKSVGKSAPAD 297 (366)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTT
T ss_pred hHHHHHHHHHHHHHHCCCCCCcceEEEcCCCCHHHHHHHHHHHHcCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCc
Confidence 345567889999999998643211111 11223333344445443 35777665 45667889999999999976543
No 192
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=90.10 E-value=8.9 Score=39.71 Aligned_cols=116 Identities=9% Similarity=0.034 Sum_probs=67.5
Q ss_pred cCCHHHHHhcCCeEEE-EeCch----HHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhc
Q 003054 570 ITDVKMLIKRGDNVGY-QKGSF----VLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQY 644 (852)
Q Consensus 570 i~sl~dL~~~~~~vg~-~~~s~----~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~ 644 (852)
.-+++||. +.++.. ..++. ...++.+.++........++.+...+++..|. ..+++.... ..... .
T Consensus 183 ~~~~~dL~--~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lv~~G~----Giailp~~~-~~~~~--~ 253 (324)
T 1al3_A 183 SVSIEELA--QYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGL----GVGVIASMA-VDPVS--D 253 (324)
T ss_dssp CCCHHHHH--TSEEEEECTTSTTHHHHHHHHHHHTCCCEEEEEESSHHHHHHHHHHTS----CEEEEEGGG-CCTTT--C
T ss_pred CCCHHHHh--CCCeEEecCCCcHHHHHHHHHHHcCCCCceEEEeCCHHHHHHHHHhCC----CeEEechhh-hhhhc--c
Confidence 34689997 554443 33332 23445555665545567788999999999998 455555432 11111 1
Q ss_pred CCceEee--cccccccceEEEecCCCCchhhHHHHHHhccccChhHHHHHHHcc
Q 003054 645 CSKYAMI--EPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFK 696 (852)
Q Consensus 645 ~~~~~~v--~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~i~~kw~~ 696 (852)
..+..+ ........++++.+++.++...+...+..+.+. .-+.+.++++.
T Consensus 254 -~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~fi~~l~~~-~~~~~~~~~~~ 305 (324)
T 1al3_A 254 -PDLVKLDANGIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPH-LTRDVVDTAVA 305 (324)
T ss_dssp -TTSEEEECBTTBCCEEEEEEEETTCCCCHHHHHHHHHHCTT-CCHHHHHHHHH
T ss_pred -CCeEEEECCCCCcceEEEEEEeCCCCCCHHHHHHHHHHHHH-hccchhhhhhh
Confidence 124433 223334567888888877777777766666554 33455555653
No 193
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=90.00 E-value=1.6 Score=44.11 Aligned_cols=114 Identities=11% Similarity=0.049 Sum_probs=61.2
Q ss_pred cCC--HHHHHhcCCeEEEEeC------chHHHHHHhcCCC---CcceeecCCHhHHHHHhhcccccCceeEEEechhHHH
Q 003054 570 ITD--VKMLIKRGDNVGYQKG------SFVLGILKQLGFD---ERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMK 638 (852)
Q Consensus 570 i~s--l~dL~~~~~~vg~~~~------s~~~~~l~~~~~~---~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~ 638 (852)
|++ +.|+.+.+.+|++... .+....|++.+.- ..+++...+..+....+.+|+ +++.+.....+.
T Consensus 120 i~~~dl~~l~~~~~~iai~dP~~~p~G~~a~~~l~~~g~~~~l~~~~v~~~~~~~~~~~v~~Ge----ad~giv~~s~a~ 195 (253)
T 3gzg_A 120 RAPGAIAKALGENGRLAVGQTASVPAGSYAAAALRKLGQWDSVSNRLAESESVRAALMLVSRGE----APLGIVYGSDAR 195 (253)
T ss_dssp TSTTHHHHHTTTTCCEEEECTTTSHHHHHHHHHHHHTTCHHHHTTSEEEESSHHHHHHHHHTTS----SSEEEEEHHHHH
T ss_pred CCHHHHHHhhcCCCEEEEeCCCCCchHHHHHHHHHHcCcHHHHhhceeecCCHHHHHHHHHcCC----CCEEEEEhhccc
Confidence 555 5555434468888543 2344556655431 235666678888999999999 787776544332
Q ss_pred HHHhhcCCceEee---ccc-ccccceEEEecCCCCchhhHHHHHHhccccChhHHHHHHH
Q 003054 639 LLIGQYCSKYAMI---EPK-FKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAW 694 (852)
Q Consensus 639 ~~~~~~~~~~~~v---~~~-~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~i~~kw 694 (852)
.. +++.++ ++. .....+.+++.|++ -.+.-.+++..|. +..-+++..++
T Consensus 196 --~~---~~v~~v~~~P~~~~~~i~~~~ai~k~~-~~~~A~~Fi~fl~-S~eaq~i~~~~ 248 (253)
T 3gzg_A 196 --AD---AKVRVVATFPDDSHDAIVYPVAALKNS-NNPATAAFVSWLG-SKPAKAIFARR 248 (253)
T ss_dssp --HC---TTEEEEEECCGGGSCCEEEEEEECTTC-CCTTHHHHHHHTT-SHHHHHHHHHT
T ss_pred --cC---CCceEEEECCcccCceeEEEEEEECCC-ChHHHHHHHHHHc-CHHHHHHHHHc
Confidence 11 224333 332 33445677888875 2222333333332 22345555443
No 194
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=89.89 E-value=3.2 Score=41.24 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=63.9
Q ss_pred cCCHHHHHhcCCeEEEEeC------chHHHHHHhcCCC---CcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHH
Q 003054 570 ITDVKMLIKRGDNVGYQKG------SFVLGILKQLGFD---ERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLL 640 (852)
Q Consensus 570 i~sl~dL~~~~~~vg~~~~------s~~~~~l~~~~~~---~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~ 640 (852)
++++.||.+ +.+|++... .+....|++.+.- ..+++...+..+..+.+.+|+ +++.+.....+..
T Consensus 107 ~~~l~~l~~-~~~iai~~p~~~p~G~~a~~~l~~~g~~~~l~~~~~~~~~~~~~~~~v~~Ge----~d~gi~~~s~a~~- 180 (237)
T 3r26_A 107 KTNWTSLLN-GGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNE----APLGIVYGSDAVA- 180 (237)
T ss_dssp TCCHHHHHT-TCCEEEECTTTCHHHHHHHHHHHHTTCHHHHGGGEEEESSHHHHHHHHHTTS----SSEEEEEHHHHHH-
T ss_pred hHhHHHhcC-CCeEEEeCCCCCChHHHHHHHHHHcCCHHHhhhcEEecCCHHHHHHHHHcCC----CCEEEEEeccccc-
Confidence 456777764 457887543 3445566665541 224566677888999999999 7877765433321
Q ss_pred HhhcCCceEe---eccc-ccccceEEEecCCCCchhhHHHHHHhccccChhHHHHHHH
Q 003054 641 IGQYCSKYAM---IEPK-FKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAW 694 (852)
Q Consensus 641 ~~~~~~~~~~---v~~~-~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~i~~kw 694 (852)
. +++.+ +++. .....+.+++.|+++- +.-.+++.-|. +..-+.+..++
T Consensus 181 -~---~~~~~v~~~P~~~~~~~~~~~ai~k~~~~-~~A~~Fi~fl~-S~eaq~i~~~~ 232 (237)
T 3r26_A 181 -S---KGVKVVATFPEDSHKKVEYPVAVVEGHNN-ATVKAFYDYLK-GPQAAEIFKRY 232 (237)
T ss_dssp -C---SSEEEEEECCGGGSCCEEEEEEEBTTCCS-HHHHHHHHHHT-SHHHHHHHHHT
T ss_pred -C---CCCeEEEECCcccCCeeeeeEEEEcCCCC-HHHHHHHHHHc-CHHHHHHHHHc
Confidence 1 12333 3332 3344567888898875 33344444443 32345554443
No 195
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=89.50 E-value=5.8 Score=39.58 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=28.2
Q ss_pred HHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEE
Q 003054 383 FKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVV 428 (852)
Q Consensus 383 ~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~ 428 (852)
++...++.| ++++++.+. +|.....+|.+|++|+..
T Consensus 21 ~~~~~~~~G--l~ve~~~f~--------d~~~~n~AL~~G~iD~n~ 56 (241)
T 1xs5_A 21 AKEEVKKQH--IELRIVEFT--------NYVALNEAVMRGDILMNF 56 (241)
T ss_dssp HHHHHHTTT--EEEEEEECS--------CHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHcC--CeEEEEEcC--------ChHHHHHHHHcCCCCEec
Confidence 344556667 467778877 799999999999999964
No 196
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=88.77 E-value=0.32 Score=52.13 Aligned_cols=74 Identities=9% Similarity=0.163 Sum_probs=58.3
Q ss_pred HHHHhhhhheecccCCCCCCCcccccchhHHHHHHHhhhcc-cc-ccccchhhHHHHHHHHHHHHHHHHhhhhccceeee
Q 003054 486 IFIGFVVWVLEHRVNEDFRGPAGQQVGTSFWFSFSTMVFSQ-RE-RVISNLARIVVIVWCFVVLILTQSYTASLTSLLTV 563 (852)
Q Consensus 486 i~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~ 563 (852)
++.+++.+.+++..+.+ ...++..++||++.++...| +. .|.+..+|++.++++++++++.+...+.+++.+..
T Consensus 141 ~~~a~~~~~~e~~~~~~----~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 216 (355)
T 3beh_A 141 FAVALAAYVIERDIQPE----KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQ 216 (355)
T ss_dssp HHHHHHHHHHHTTTCHH----HHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCc----ccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777777654321 12468899999999999876 33 67889999999999999999999999999887753
No 197
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=88.65 E-value=2.4 Score=45.86 Aligned_cols=88 Identities=10% Similarity=0.017 Sum_probs=66.9
Q ss_pred HHHHHHHHcCCcEEEEEEEeCCccc--ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh
Q 003054 48 AITAIIKAFGWREAVPIYVDNQYGE--EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP 125 (852)
Q Consensus 48 aia~~l~~~gw~~vaii~~d~~~G~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~ 125 (852)
.+.++++.+|.+++.+++....+.. +..+.+.+.|++.|+++.....+.++.+.+.+...+..+++.++|+||-.+.+
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG 102 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGGG 102 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEESH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 4667778889899999986655555 58999999999999887544445566677888899999999999999977654
Q ss_pred --hhHHHHHHHH
Q 003054 126 --SLGSRIFEKA 135 (852)
Q Consensus 126 --~~~~~i~~~a 135 (852)
-|+.+++...
T Consensus 103 sv~D~aK~iA~~ 114 (387)
T 3bfj_A 103 SPHDCGKGIGIA 114 (387)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhhHHHHHHHH
Confidence 4667776655
No 198
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=88.64 E-value=0.61 Score=45.44 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=48.0
Q ss_pred EeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEeeeeeecCcceeeeccccccccceEEEE
Q 003054 377 GYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIV 456 (852)
Q Consensus 377 G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv 456 (852)
.+-.+++..+.++.+ .++++... ++..+++++|.+|++|+++.... .....+. ..|+....+++++
T Consensus 18 ~~l~~~l~~f~~~~P-~v~l~l~~---------~~~~~~~~~l~~g~~Dl~i~~~~---~~~~~l~-~~~l~~~~~~~v~ 83 (219)
T 1i6a_A 18 YLLPHIIPMLHQTFP-KLEMYLHE---------AQTHQLLAQLDSGKLDAVILALV---KESEAFI-EVPLFDEPMLLAI 83 (219)
T ss_dssp HHHHHHHHHHHHHCT-TEEEEEEE---------CCHHHHHHHHHHTSCSEEEEECC---GGGTTSE-EEEEEEEEEEEEE
T ss_pred hhhhHHHHHHHHHCC-CeEEEEEE---------CChHHHHHHHHcCCeeEEEecCC---CCCCCcc-eeeeecccEEEEE
Confidence 345688889999887 35666654 35789999999999999885322 1112232 3577788888888
Q ss_pred Ecc
Q 003054 457 PIK 459 (852)
Q Consensus 457 ~~~ 459 (852)
+..
T Consensus 84 ~~~ 86 (219)
T 1i6a_A 84 YED 86 (219)
T ss_dssp ETT
T ss_pred cCC
Confidence 855
No 199
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=88.47 E-value=0.71 Score=48.32 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=49.9
Q ss_pred ccchhHHHHHHHhhhcc-c-cccccchhhHHHHHHHHHHHHHHHHhhhhccceeeecc
Q 003054 510 QVGTSFWFSFSTMVFSQ-R-ERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQ 565 (852)
Q Consensus 510 ~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~ 565 (852)
++.+++||++.++...| + ..|.+..+|++.++++++++++.+.-++.+++.++.+.
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999877 3 36789999999999999999999999999999887654
No 200
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=88.07 E-value=1.9 Score=46.51 Aligned_cols=91 Identities=12% Similarity=0.019 Sum_probs=70.3
Q ss_pred HHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh
Q 003054 46 AGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP 125 (852)
Q Consensus 46 ~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~ 125 (852)
...+.++++.+|.+++.+++...-...+..+.+.+.|++.|+++.....+.++.+.+.+...+..+++.++|+||-.+-+
T Consensus 19 ~~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 98 (383)
T 3ox4_A 19 LEKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGG 98 (383)
T ss_dssp HHHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred HHHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCCc
Confidence 44566777889999999998655444457888999999999987655556667778888999999999999999888765
Q ss_pred h--hHHHHHHHHH
Q 003054 126 S--LGSRIFEKAN 136 (852)
Q Consensus 126 ~--~~~~i~~~a~ 136 (852)
. |+.+++....
T Consensus 99 sv~D~aK~ia~~~ 111 (383)
T 3ox4_A 99 SPHDCAKAIALVA 111 (383)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4 6677766555
No 201
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=87.88 E-value=1.3 Score=46.38 Aligned_cols=133 Identities=8% Similarity=0.011 Sum_probs=81.8
Q ss_pred HHhcCCCCccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHH-------cCCcEEEEEEEeC--CcccccHHH
Q 003054 7 IQLGNKSQVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKA-------FGWREAVPIYVDN--QYGEEMIPS 77 (852)
Q Consensus 7 ~~i~~~~~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~-------~gw~~vaii~~d~--~~G~~~~~~ 77 (852)
...+.+.++|+|......+.. . +....+..++...++.+++++.+ .|.++++++..+. .......+.
T Consensus 77 ~~~~~~~giPvV~~~~~~~~~--~--~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~~R~~G 152 (330)
T 3uug_A 77 LKQAGEQGIKVIAYDRLIRNS--G--DVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFFFYDG 152 (330)
T ss_dssp HHHHHHTTCEEEEESSCCCSC--T--TCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCC--C--ceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHHHHHHH
Confidence 445667899999986543321 1 12233455777778888888766 6889999997433 234556788
Q ss_pred HHHHHHhC---C-ceeeeee-----ecCCCCChHHHHHHHHHhhc-----CCceEEEEEeChhhHHHHHHHHHHcCCccc
Q 003054 78 LTDALQAI---D-TRVPYRS-----VISPLATDDQIEKELYKLFT-----MQTRVFILHMLPSLGSRIFEKANEIGLMNK 143 (852)
Q Consensus 78 l~~~l~~~---g-~~v~~~~-----~~~~~~~~~d~~~~l~~l~~-----~~~~viv~~~~~~~~~~i~~~a~~~G~~~~ 143 (852)
|.+++++. | +++.... ....+.+..+-...+.++.+ ..+++|+ +.+...+..++++++++|+..|
T Consensus 153 f~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP 231 (330)
T 3uug_A 153 AMSVLKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAVL-SPYDGLSIGIISSLKGVGYGTK 231 (330)
T ss_dssp HHHHHHHHHHHTSEECTTCCCSHHHHBCGGGCHHHHHHHHHHHHHHHCSSSCCCEEE-CSSHHHHHHHHHHHHHTTCSSS
T ss_pred HHHHHHhccccCceEEeecccccccccCCCCCHHHHHHHHHHHHHhcCCCCCeEEEE-ECCCchHHHHHHHHHHcCCCCC
Confidence 88899886 3 5554221 00111122233334444443 5667755 4566778899999999999765
Q ss_pred c
Q 003054 144 G 144 (852)
Q Consensus 144 ~ 144 (852)
+
T Consensus 232 ~ 232 (330)
T 3uug_A 232 D 232 (330)
T ss_dssp S
T ss_pred C
Confidence 3
No 202
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=87.09 E-value=5.8 Score=40.24 Aligned_cols=83 Identities=7% Similarity=0.040 Sum_probs=55.5
Q ss_pred CceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCc
Q 003054 344 EKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGE 423 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~ 423 (852)
.+.++||++ +.+. ..+..+++..+.++.+ .+++++... +..+++.+|.+|+
T Consensus 90 ~g~l~Ig~~--~~~~-----------------~~~l~~~l~~f~~~~P-~i~l~~~~~---------~~~~~~~~l~~g~ 140 (294)
T 1ixc_A 90 VGELSVAYF--GTPI-----------------YRSLPLLLRAFLTSTP-TATVSLTHM---------TKDEQVEGLLAGT 140 (294)
T ss_dssp CEEEEEEEC--SGGG-----------------GTHHHHHHHHHHHHCT-TEEEEEEEC---------CHHHHHHHHHHTS
T ss_pred CceEEEEEc--cchh-----------------HHHHHHHHHHHHHHCC-CcEEEEEeC---------CHHHHHHHHHCCC
Confidence 467999987 2211 1344678888888887 356665542 4678999999999
Q ss_pred ccEEEeeeeeecCcceeeeccccccccceEEEEEcc
Q 003054 424 FDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIK 459 (852)
Q Consensus 424 ~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~ 459 (852)
+|+++...... ...+. ..|.....++++++..
T Consensus 141 ~Dl~i~~~~~~---~~~l~-~~~l~~~~~~~v~~~~ 172 (294)
T 1ixc_A 141 IHVGFSRFFPR---HPGIE-IVNIAQEDLYLAVHRS 172 (294)
T ss_dssp CSEEEESCCCC---CTTEE-EEEEEEEEEEEEEEGG
T ss_pred ccEEEEecCCC---CCCce-EEEEeeccEEEEEeCC
Confidence 99998643221 12232 3677788888888854
No 203
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=86.71 E-value=3.3 Score=42.30 Aligned_cols=104 Identities=10% Similarity=0.076 Sum_probs=57.4
Q ss_pred cCCHHHHHhcCC--eEEEEeCch-----HHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHh
Q 003054 570 ITDVKMLIKRGD--NVGYQKGSF-----VLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIG 642 (852)
Q Consensus 570 i~sl~dL~~~~~--~vg~~~~s~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~ 642 (852)
|+|++||..... .+|...+.. ...+++.++++...+... +..+...++.+|+ ++++....+....-
T Consensus 125 i~si~DL~g~~~~~~~g~~~~~~~~~~g~~~~~~~yGl~~~~~~~~-~~~~~~~Al~~g~----vd~~~~~~p~~~~~-- 197 (275)
T 1sw5_A 125 VEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQM-EPTLMYEAIKNKQ----VDVIPAYTTDSRVD-- 197 (275)
T ss_dssp CCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEEEC-CGGGHHHHHHTTS----CSEEEEETTCHHHH--
T ss_pred CCcHHHHHhhhcceEeccCcccccccchHHHHHHhcCCCcccccCC-CHHHHHHHHHcCC----CeEEEEeCCCcchh--
Confidence 899999973311 555432211 122556667655455555 5668899999999 99988877665532
Q ss_pred hcCCceEeeccc---ccccceEEEecCCCCchhhHHHHHHhcc
Q 003054 643 QYCSKYAMIEPK---FKTAGFGFVFPLHSPLVHDVSKAILNVT 682 (852)
Q Consensus 643 ~~~~~~~~v~~~---~~~~~~~~~~~k~spl~~~in~~il~l~ 682 (852)
++ .+.++... +.......+++++..=.+.+-++|.++.
T Consensus 198 ~~--~l~~L~d~~~~~~~~~~~~v~~~~~~~~P~~~~~l~~l~ 238 (275)
T 1sw5_A 198 LF--NLKILEDDKGALPPYDAIIIVNGNTAKDEKLISVLKLLE 238 (275)
T ss_dssp HT--TEEECBCTTCCSCCCEEEEEECTTGGGCHHHHHHHHTTT
T ss_pred cC--CeEEccCCcccCCccceeeeeehhhccChHHHHHHHHHH
Confidence 22 24444332 2223344455554210034445555553
No 204
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=86.63 E-value=9.5 Score=39.30 Aligned_cols=68 Identities=10% Similarity=0.052 Sum_probs=45.0
Q ss_pred eeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEeeeeeecCcceeeeccccccccceEEEEE
Q 003054 378 YCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVP 457 (852)
Q Consensus 378 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~ 457 (852)
+...++..+.++.+ .+++++... +..+++.+|.+|++|+++..... ....+. ..|+....++++++
T Consensus 119 ~l~~~l~~f~~~~P-~v~l~l~~~---------~~~~~~~~l~~g~~Dl~i~~~~~---~~~~l~-~~~l~~~~~~~v~~ 184 (315)
T 1uth_A 119 FMPPLMEALAQRAP-HIQISTLRP---------NAGNLKEDMESGAVDLALGLLPE---LQTGFF-QRRLFRHRYVCMFR 184 (315)
T ss_dssp HHHHHHHHHHHHCT-TCEEEEECT---------TSSCHHHHHHHTSCCEEEECCTT---CCTTEE-EEEEEEECEEEEEE
T ss_pred HHHHHHHHHHHHCC-CcEEEEEeC---------CcccHHHHHHCCCCCEEEecCCC---CCCCce-EEEeeccceEEEEe
Confidence 34577888888887 355555442 45689999999999999863221 111222 35677788888887
Q ss_pred cc
Q 003054 458 IK 459 (852)
Q Consensus 458 ~~ 459 (852)
..
T Consensus 185 ~~ 186 (315)
T 1uth_A 185 KD 186 (315)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 205
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=86.56 E-value=2.7 Score=43.01 Aligned_cols=139 Identities=9% Similarity=-0.006 Sum_probs=82.5
Q ss_pred cCCCCccEEeeecCCCCCC-C-CCCCceEeccCCchhHHHHHHHHHHHc-C--CcEEEEEEEeCCc--ccccHHHHHHHH
Q 003054 10 GNKSQVPILSFSATSPSLT-S-IRSPYFFRGSLNDSSQAGAITAIIKAF-G--WREAVPIYVDNQY--GEEMIPSLTDAL 82 (852)
Q Consensus 10 ~~~~~vP~Is~~ats~~lt-~-~~~py~fR~~p~d~~~~~aia~~l~~~-g--w~~vaii~~d~~~--G~~~~~~l~~~l 82 (852)
+.+.++|+|......+... . .+.++.-.+..++..-++.++++|.+. | -+++++|..+... .....+.|++++
T Consensus 80 ~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R~~Gf~~al 159 (288)
T 1gud_A 80 AWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAF 159 (288)
T ss_dssp HHHTTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCeEEEECCCCCcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHHHHHHHHHH
Confidence 4457899998754321100 0 000110234556666677788887665 8 8999999854332 345678899999
Q ss_pred HhC-CceeeeeeecCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCc
Q 003054 83 QAI-DTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDG 152 (852)
Q Consensus 83 ~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~ 152 (852)
++. |+++..... .+.+..+-...+.++.+ ..+++|+. .+...+..++++++++|+. .+...++-|.
T Consensus 160 ~~~~g~~~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~~G~~-~dv~vvGfD~ 228 (288)
T 1gud_A 160 KKASQIKLVASQP--ADWDRIKALDVATNVLQRNPNIKAIYC-ANDTMAMGVAQAVANAGKT-GKVLVVGTDG 228 (288)
T ss_dssp HTCTTEEEEEEEE--CTTCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTCT-TTSEEEEESC
T ss_pred HhCCCcEEEEeec--CCccHHHHHHHHHHHHHhCCCceEEEE-CCCchHHHHHHHHHhcCCC-CCeEEEEeCC
Confidence 988 887654322 11223333344455443 34677554 5666789999999999984 3444555443
No 206
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=86.39 E-value=9.3 Score=36.48 Aligned_cols=104 Identities=11% Similarity=-0.004 Sum_probs=60.8
Q ss_pred CCHHHHHhcCCeEEEEeCchHHHHHHhcCCCC----cceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCC
Q 003054 571 TDVKMLIKRGDNVGYQKGSFVLGILKQLGFDE----RKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCS 646 (852)
Q Consensus 571 ~sl~dL~~~~~~vg~~~~s~~~~~l~~~~~~~----~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~ 646 (852)
-+++||.+.. -+....++....++.+.+... ......++.+...+++..|. ..+++-+............
T Consensus 96 ~~~~~L~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~----Gi~~lp~~~~~~~~~~~~l- 169 (219)
T 3kos_A 96 QTPADILKFP-LLRSYRRDEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQAGM----GVAIAPVRMFTHLLSSERI- 169 (219)
T ss_dssp SSGGGGGGSC-EEEESCTTHHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHTTS----CBEEEEGGGCHHHHHTTSS-
T ss_pred CCHHHHhcCc-eeccCCccCHHHHHHHcCCCCCccccceeEEccHHHHHHHHHcCC----CeEeehHHhhHHHHHcCCe-
Confidence 4678886322 344445666666666543322 23467789999999999998 5666665544433332222
Q ss_pred ceEeecccccccceEEEecCCCCchhhHHHHHHhc
Q 003054 647 KYAMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNV 681 (852)
Q Consensus 647 ~~~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l 681 (852)
.....+......++++.+++.+....+...+..+
T Consensus 170 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 203 (219)
T 3kos_A 170 -VQPFLTQIDLGSYWITRLQSRPETPAMREFSRWL 203 (219)
T ss_dssp -BCCCCCCBCSCEEEEEEETTSCCCHHHHHHHHHH
T ss_pred -eccccCCccCCcEEEEecccccCCHHHHHHHHHH
Confidence 1222333344567888888876666655555444
No 207
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=86.03 E-value=3.2 Score=42.36 Aligned_cols=79 Identities=11% Similarity=0.139 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCC-------CChHHHHHHHHHhhcCCce
Q 003054 45 QAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPL-------ATDDQIEKELYKLFTMQTR 117 (852)
Q Consensus 45 ~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~-------~~~~d~~~~l~~l~~~~~~ 117 (852)
.+.++++.++..|.++|+++. .|.....+.+.+.+++.|+++......... .+...+...+.++...++|
T Consensus 133 ~~~A~~~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gad 209 (273)
T 2xed_A 133 SAGALVEGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVD 209 (273)
T ss_dssp HHHHHHHHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCS
T ss_pred HHHHHHHHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCC
Confidence 357777777888999999995 566666778999999999998665443321 1244577777778777889
Q ss_pred EEEEE-eChh
Q 003054 118 VFILH-MLPS 126 (852)
Q Consensus 118 viv~~-~~~~ 126 (852)
+||+. |..-
T Consensus 210 aIvLg~CT~l 219 (273)
T 2xed_A 210 ALVISCAVQM 219 (273)
T ss_dssp EEEEESSSSS
T ss_pred EEEEcCCCCc
Confidence 99888 7653
No 208
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=83.91 E-value=15 Score=38.13 Aligned_cols=60 Identities=10% Similarity=0.091 Sum_probs=45.0
Q ss_pred CCcCCHHHHHhcCCeEEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHH
Q 003054 568 PTITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYM 637 (852)
Q Consensus 568 ~~i~sl~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~ 637 (852)
.+|++++||. |++|.+.........++.++..+ +. -...|...+|++|. +|+.....+.+
T Consensus 133 ~pI~s~~Dlk--GlKiRv~~~~~~~~~~~alGa~p---v~-m~~~Evy~ALq~G~----vDg~~~~~~~~ 192 (312)
T 2xwv_A 133 RAINSIADMK--GLKLRVPNAATNLAYAKYVGASP---TP-MAFSEVYLALQTNA----VDGQENPLAAV 192 (312)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHHHHHTCEE---EE-CCGGGHHHHHHTTS----SSEEEEEHHHH
T ss_pred CCcCCHHHhC--CCEEEeCCCHHHHHHHHHcCCee---ee-cCHHHHHHHHHcCC----cceEeccHHHH
Confidence 5799999997 99988865444456788877532 22 34568999999999 99998876655
No 209
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=83.30 E-value=3.8 Score=40.37 Aligned_cols=79 Identities=6% Similarity=-0.043 Sum_probs=57.5
Q ss_pred HHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCC-------CChHHHHHHHHHhhcC--Cc
Q 003054 46 AGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPL-------ATDDQIEKELYKLFTM--QT 116 (852)
Q Consensus 46 ~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~-------~~~~d~~~~l~~l~~~--~~ 116 (852)
+.++++.++..|-++|+++. .|+....+.+.+.+++.|+++......... .+...+...+.++... ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 67777778888989999995 566676778889999999998655443321 1234566777777666 78
Q ss_pred eEEEEEeChhh
Q 003054 117 RVFILHMLPSL 127 (852)
Q Consensus 117 ~viv~~~~~~~ 127 (852)
|+||+.|..-.
T Consensus 173 daIvLgCT~l~ 183 (223)
T 2dgd_A 173 DAVYIACTALS 183 (223)
T ss_dssp SEEEECCTTSC
T ss_pred CEEEEeCCccc
Confidence 88888876543
No 210
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=83.29 E-value=6.8 Score=41.07 Aligned_cols=101 Identities=13% Similarity=-0.044 Sum_probs=60.9
Q ss_pred CCcCCHHHHHhcCCeEEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHH-HhhcCC
Q 003054 568 PTITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLL-IGQYCS 646 (852)
Q Consensus 568 ~~i~sl~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~-~~~~~~ 646 (852)
.+|++++||. |++|.+..+......++.++..+ ..-...|...+|++|. +|+.....+.+.-. ..+-.+
T Consensus 148 ~pI~s~~DLk--G~KiRv~~~~~~~~~~~alGa~p----v~m~~~Evy~ALq~G~----VDg~~~p~~~~~~~~~~ev~k 217 (327)
T 2hpg_A 148 KPIRKPEDLN--GLRIRTPGAPAWQESIRSLGAIP----VAVNFGEIYTAVQTRA----VDGAELTYANVYNGGLYEVLK 217 (327)
T ss_dssp SCCSSGGGGT--TCEEECCSSHHHHHHHHHHTSEE----ECCCGGGHHHHHHTTS----CSEEEECHHHHHHTTGGGTCC
T ss_pred CCCCCHHHHC--CCEEEeCCCHHHHHHHHHcCCEe----eecCHHHHHHHHHcCC----eeEEECCHHHHHHcChhhhcc
Confidence 5799999997 99988864445667888887532 2235678999999999 99998865543211 111243
Q ss_pred ceEeecccccccceEEEecCCC--CchhhHHHHHHh
Q 003054 647 KYAMIEPKFKTAGFGFVFPLHS--PLVHDVSKAILN 680 (852)
Q Consensus 647 ~~~~v~~~~~~~~~~~~~~k~s--pl~~~in~~il~ 680 (852)
+....... .....+++++.. -|-+...++|..
T Consensus 218 -y~~~~~~~-~~~~~~~~n~~~~~~L~~e~q~~i~~ 251 (327)
T 2hpg_A 218 -YMSETGHF-LLINFEIVSADWFNSLPKEYQKIIEE 251 (327)
T ss_dssp -EEEEEEEE-EEEEEEEEEHHHHHHSCHHHHHHHHH
T ss_pred -EEEecCcc-hhceEEEEeHHHHhcCCHHHHHHHHH
Confidence 33222222 234566777651 244444444443
No 211
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=83.23 E-value=0.91 Score=51.12 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=54.4
Q ss_pred HHhhhhheecccCCCCCCCcccccchhHHHHHHHhhhcc-c-cccccchhhHHHHHHHHHHHHHHHHhhhhccceeee
Q 003054 488 IGFVVWVLEHRVNEDFRGPAGQQVGTSFWFSFSTMVFSQ-R-ERVISNLARIVVIVWCFVVLILTQSYTASLTSLLTV 563 (852)
Q Consensus 488 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~ 563 (852)
.+.++|..+... ......++..++|+++.++...| + ..|.+..+|++.++++++++++.+.+.|.+.+.+..
T Consensus 357 f~~~~~~~e~~~----~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 357 FSSAVYFAEADE----RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp HHHHHHHHHTTC----TTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHhhhheeeccC----CCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556555432 12233578899999999999876 3 367888899999999999999999999988876544
No 212
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=83.05 E-value=2.6 Score=45.52 Aligned_cols=89 Identities=13% Similarity=0.062 Sum_probs=67.1
Q ss_pred HHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh--
Q 003054 48 AITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-- 125 (852)
Q Consensus 48 aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~-- 125 (852)
.+.++++.+|.+++.+++....+..+..+.+.+.|++.|+++.....+.++.+.+.+...+..+++.++|+||-.+.+
T Consensus 21 ~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv 100 (386)
T 1rrm_A 21 ALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSP 100 (386)
T ss_dssp GHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEESHHH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCChHH
Confidence 456677778889998888554444457888999999999887654556666677888888999999999999977654
Q ss_pred hhHHHHHHHHH
Q 003054 126 SLGSRIFEKAN 136 (852)
Q Consensus 126 ~~~~~i~~~a~ 136 (852)
-|+.+++....
T Consensus 101 ~D~aK~iA~~~ 111 (386)
T 1rrm_A 101 QDTCKAIGIIS 111 (386)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46777766654
No 213
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=82.58 E-value=2.5 Score=43.39 Aligned_cols=61 Identities=10% Similarity=0.059 Sum_probs=42.5
Q ss_pred cCCeEEEE-eCchHHH----HHHhcCCCCcceeecC-CHhHHHHHhhcccccCceeEEEechhHHHHHHhhc
Q 003054 579 RGDNVGYQ-KGSFVLG----ILKQLGFDERKLVVYN-SPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQY 644 (852)
Q Consensus 579 ~~~~vg~~-~~s~~~~----~l~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~ 644 (852)
.|++|++. .|+..+. +|++.+. ..+++... ++.+...++.+|+ +||.+...+++.....+.
T Consensus 95 kGK~Iav~~~gs~~~~ll~~~L~~~Gl-dv~~~~~~~~~~~~~~al~~G~----vDa~~~~eP~~~~a~~~~ 161 (283)
T 3hn0_A 95 KEPALYVFGNGTTPDILTRYYLGRQRL-DYPLNYAFNTAGEITQGILAGK----VNRAVLGEPFLSIALRKD 161 (283)
T ss_dssp CSCCEECSSTTSHHHHHHHHHHHHHTC-CCCEECSCCSHHHHHHHHHHTS----CSEEEECTTHHHHHHHHC
T ss_pred CCCEEEecCCCCcHHHHHHHHHHHcCC-ceEEEEccCCHHHHHHHHHcCC----CCEEEecccHHHHHHhhC
Confidence 38899975 5665443 3445666 34555444 6889999999999 999888778777655443
No 214
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=82.49 E-value=5.5 Score=42.28 Aligned_cols=103 Identities=8% Similarity=0.083 Sum_probs=67.2
Q ss_pred ccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCc----ccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhh-
Q 003054 38 GSLNDSSQAGAITAIIKAFGWREAVPIYVDNQY----GEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLF- 112 (852)
Q Consensus 38 ~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~----G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~- 112 (852)
+..++..-+..++++|.+.|-|+++.|...... .....+.+++++++.|+++.....-.+ ..+..+ ...+++.
T Consensus 136 V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~~d~-t~e~G~-~~a~~lL~ 213 (371)
T 3qi7_A 136 LGVSAEERGKVLAERSKEMGAKAFIHYASTDDLKDVNIAKRLEMIKETCKNIGLPFVQVNTPNI-NTEEDK-NKVKQFLN 213 (371)
T ss_dssp EECCHHHHHHHHHHHHHHTTCSCEEEEEETTGGGSHHHHHHHHHHHHHHHHTTCCEEEEEECCC-SSTHHH-HHHHHHHH
T ss_pred EEeChHHHHHHHHHHHHHCCCCEEEEEeccccccchhHHHHHHHHHHHHHHcCCCceeecCCCC-chHHHH-HHHHHHHh
Confidence 333444555566688999999999999864432 233577899999999998765533222 122223 2333322
Q ss_pred --------c-CCceEEEEEeChhhHHHHHHHHHHcCCccc
Q 003054 113 --------T-MQTRVFILHMLPSLGSRIFEKANEIGLMNK 143 (852)
Q Consensus 113 --------~-~~~~viv~~~~~~~~~~i~~~a~~~G~~~~ 143 (852)
. ..+++ |++++...+..++++++++|...|
T Consensus 214 ~~~~~~~~~~~~~TA-IFatND~mAiG~ikal~e~Gi~VP 252 (371)
T 3qi7_A 214 EDIEKQVKKYGKDIN-VFGVNEYMDEVILTKALELKYIVA 252 (371)
T ss_dssp HHHHHHHHHHCSCCE-EEESSHHHHHHHHHHHHHHCCBBC
T ss_pred ccccchhhccCCCcE-EEECCHHHHHHHHHHHHHcCCccC
Confidence 2 23354 556788899999999999998655
No 215
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=82.13 E-value=4.9 Score=43.69 Aligned_cols=89 Identities=11% Similarity=0.033 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCcEEEEEEEeCCccc-ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh
Q 003054 47 GAITAIIKAFGWREAVPIYVDNQYGE-EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP 125 (852)
Q Consensus 47 ~aia~~l~~~gw~~vaii~~d~~~G~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~ 125 (852)
..+.++++.+|.+++.+|+.+..... +..+.+.+.|++.|+++.....+.++.+.+.+...+..+++.++|+||-.+.+
T Consensus 32 ~~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 111 (407)
T 1vlj_A 32 PKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGG 111 (407)
T ss_dssp GGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESH
T ss_pred HHHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCh
Confidence 34566778889899999985343333 46888999999999887544444455667888888899999999999977654
Q ss_pred --hhHHHHHHHH
Q 003054 126 --SLGSRIFEKA 135 (852)
Q Consensus 126 --~~~~~i~~~a 135 (852)
-|+.+++...
T Consensus 112 sviD~AK~iA~~ 123 (407)
T 1vlj_A 112 SVVDSAKAVAAG 123 (407)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 4666666554
No 216
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=81.91 E-value=8.9 Score=41.00 Aligned_cols=89 Identities=9% Similarity=-0.028 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCcEEEEEEEeCCccc-ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh
Q 003054 47 GAITAIIKAFGWREAVPIYVDNQYGE-EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP 125 (852)
Q Consensus 47 ~aia~~l~~~gw~~vaii~~d~~~G~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~ 125 (852)
..+.++++.+| +++.+|+....+.. +..+.+.+.|++.|+++.....+.++.+.+.+...+..+++.++|+||-.+.+
T Consensus 30 ~~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG 108 (371)
T 1o2d_A 30 EKRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGG 108 (371)
T ss_dssp HHHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEESH
T ss_pred HHHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCh
Confidence 34566677788 99999986545443 46788999999999887555555666678889999999999999999977654
Q ss_pred --hhHHHHHHHHH
Q 003054 126 --SLGSRIFEKAN 136 (852)
Q Consensus 126 --~~~~~i~~~a~ 136 (852)
-|+.+++....
T Consensus 109 sv~D~AK~iA~~~ 121 (371)
T 1o2d_A 109 SPMDFAKAVAVLL 121 (371)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 46676666543
No 217
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=81.23 E-value=9.5 Score=41.35 Aligned_cols=93 Identities=15% Similarity=0.143 Sum_probs=65.8
Q ss_pred CcEEEEEEEeCCcc--cccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh------hhHH
Q 003054 58 WREAVPIYVDNQYG--EEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP------SLGS 129 (852)
Q Consensus 58 w~~vaii~~d~~~G--~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~------~~~~ 129 (852)
-++|+|+| ++.|| +..++.+.+.+.+.|++++....... ...|....+..+. +++.|++.+.. +...
T Consensus 265 ~~~v~I~Y-~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~--~~~~~s~i~~~i~--~~~~ivlGspT~~~~~~p~~~ 339 (410)
T 4dik_A 265 KGKVTVIY-DSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDE--ERPAISEILKDIP--DSEALIFGVSTYEAEIHPLMR 339 (410)
T ss_dssp TTEEEEEE-ECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSS--CCCCHHHHHHHST--TCSEEEEEECCTTSSSCHHHH
T ss_pred ccceeeEE-ecccChHHHHHHHHHHHHHhcCCceEEEEeccC--CCCCHHHHHHHHH--hCCeEEEEeCCcCCcCCHHHH
Confidence 45899999 67777 55788999999999998765544442 3445666666665 56777777653 3456
Q ss_pred HHHHHHHHcCCcccceEEEEcCcccc
Q 003054 130 RIFEKANEIGLMNKGCVWIMTDGMTN 155 (852)
Q Consensus 130 ~i~~~a~~~G~~~~~~vwi~~~~~~~ 155 (852)
.++..........+....+++.+|..
T Consensus 340 ~~l~~l~~~~~~~K~~~~FGSyGWsg 365 (410)
T 4dik_A 340 FTLLEIIDKANYEKPVLVFGVHGWAP 365 (410)
T ss_dssp HHHHHHHHHCCCCCEEEEEEECCCCC
T ss_pred HHHHHHHhcccCCCEEEEEECCCCCc
Confidence 67777777777666667788888874
No 218
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=81.08 E-value=24 Score=36.09 Aligned_cols=124 Identities=11% Similarity=0.006 Sum_probs=69.3
Q ss_pred HHHhcCCC-CccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHH-HHH-cCCcEEEEEEEeCCcccccHHHHHHHH
Q 003054 6 IIQLGNKS-QVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAI-IKA-FGWREAVPIYVDNQYGEEMIPSLTDAL 82 (852)
Q Consensus 6 v~~i~~~~-~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~-l~~-~gw~~vaii~~d~~~G~~~~~~l~~~l 82 (852)
+..++.++ ++|++...... .. +.+-... .|..++..++-. +.+ .+-++|++|....... ..+.|.+.+
T Consensus 78 ~~~~~~~~p~~p~v~id~~~---~~---~~~~~v~-~d~~~g~~lag~la~~l~~~~~Ig~i~g~~~~~--r~~Gf~~~~ 148 (296)
T 2hqb_A 78 FSTIHNQYPDVHFVSFNGEV---KG---ENITSLH-FEGYAMGYFGGMVAASMSETHKVGVIAAFPWQP--EVEGFVDGA 148 (296)
T ss_dssp HHTTTTSCTTSEEEEESCCC---CS---SSEEEEE-ECCHHHHHHHHHHHHHTCSSSEEEEEESCTTCH--HHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEecCc---CC---CCEEEEE-echHHHHHHHHHHHHhhccCCeEEEEcCcCchh--hHHHHHHHH
Confidence 34455444 78888764321 11 2222222 344455444433 333 2568999998443222 788899999
Q ss_pred HhCCceeeeeeecCCCC-ChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCC
Q 003054 83 QAIDTRVPYRSVISPLA-TDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGL 140 (852)
Q Consensus 83 ~~~g~~v~~~~~~~~~~-~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~ 140 (852)
++.|.. .....+.-+. +...-.....++.+.++|+|+. .....+..+++++++.|+
T Consensus 149 ~~~~~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~-~~D~~a~Gv~~a~~e~Gv 205 (296)
T 2hqb_A 149 KYMNES-EAFVRYVGEWTDADKALELFQELQKEQVDVFYP-AGDGYHVPVVEAIKDQGD 205 (296)
T ss_dssp HHTTCC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEEC-CCTTTHHHHHHHHHHHTC
T ss_pred HHhCCC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEEE-CCCCCCHHHHHHHHHcCC
Confidence 998875 3222222111 1222233445555667998764 455567788899999883
No 219
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=79.35 E-value=6.5 Score=40.21 Aligned_cols=101 Identities=12% Similarity=0.012 Sum_probs=64.1
Q ss_pred cCCHHHHHhcCCeEEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCCceE
Q 003054 570 ITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCSKYA 649 (852)
Q Consensus 570 i~sl~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~~~ 649 (852)
+++++||. +++|+..--...+.||.+.+.+-.-+..+.+.|- +-..|- .|++++-...-.-+.++ ++.
T Consensus 121 ~~~~~~l~--~~RIATkYp~l~r~yf~~~gi~~~Ii~l~GsvE~---aP~~Gl----ADaIvDiVsTG~TLraN---gL~ 188 (304)
T 1nh8_A 121 NWTTADLA--GMRIATAYPNLVRKDLATKGIEATVIRLDGAVEI---SVQLGV----ADAIADVVGSGRTLSQH---DLV 188 (304)
T ss_dssp CCCGGGGT--TCEEEESCHHHHHHHHHHHTCCCEEEECSSCCTH---HHHTTS----CSEEEEEESSSHHHHHT---TEE
T ss_pred cCChHHhC--CCEEEeCcHHHHHHHHHHCCCeEEEEECCCceee---ccCCCc----ccEEEEEeCChHHHHHC---cCE
Confidence 67888985 8899997777889999888776444455666663 234566 77887765555444433 366
Q ss_pred eecccccccceEEEecCCCC-c--hhhHHHHHHhcc
Q 003054 650 MIEPKFKTAGFGFVFPLHSP-L--VHDVSKAILNVT 682 (852)
Q Consensus 650 ~v~~~~~~~~~~~~~~k~sp-l--~~~in~~il~l~ 682 (852)
.+++.+......++.++.+. . .+.+++.+.++.
T Consensus 189 ~i~e~I~~SsA~LI~n~~s~~~~k~~~i~~l~~rl~ 224 (304)
T 1nh8_A 189 AFGEPLCDSEAVLIERAGTDGQDQTEARDQLVARVQ 224 (304)
T ss_dssp EEEEEEEEECEEEEEEC--------CHHHHHHHHHH
T ss_pred EcccEEEEEEEEEEEccccchhhhHHHHHHHHHHHH
Confidence 67566666666777777752 2 235666666654
No 220
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=79.23 E-value=1.8 Score=44.12 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=50.2
Q ss_pred cccchhHHHHHHHhhhcc-cc-ccccc-------hhhHHHHHHHHHHHHHHHHhhhhccceeeecccCCCcCCHH
Q 003054 509 QQVGTSFWFSFSTMVFSQ-RE-RVISN-------LARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDVK 574 (852)
Q Consensus 509 ~~~~~~~~~~~~~l~~~~-~~-~~~s~-------~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~sl~ 574 (852)
.++.+++|+++.++...| ++ .|.+. ..|++.++|+++++.+.++..+.+++++...++...+..-+
T Consensus 200 ~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~~~~ 274 (280)
T 3ukm_A 200 WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKK 274 (280)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC---
T ss_pred CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 357899999999999877 33 45444 35999999999999999999999999887766554444333
No 221
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=79.04 E-value=32 Score=35.11 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=46.7
Q ss_pred eeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEeeeeeecCcceeeeccccccccceEEEEE
Q 003054 378 YCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVP 457 (852)
Q Consensus 378 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~ 457 (852)
+..+++..+.++.+ .+++++.. ++..+++.+|.+|++|+++....... ..+. ..|+....++++++
T Consensus 104 ~l~~~l~~f~~~~P-~v~i~l~~---------~~~~~~~~~l~~g~~Dlai~~~~~~~---~~l~-~~~L~~~~~~~v~~ 169 (312)
T 2h9b_A 104 LLPRIIHLYRQAHP-NLRIELYE---------MGTKAQTEALKEGRIDAGFGRLKISD---PAIK-HSLLRNERLMVAVH 169 (312)
T ss_dssp THHHHHHHHHHTCT-TCEEEEEE---------CCHHHHHHHHHTTSCSEEEESSCCCC---TTEE-EEEEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHCC-CcEEEEEe---------CCHHHHHHHHHcCCCCEEEEeCCCCC---CCce-EEEeecceEEEEEc
Confidence 44678888888876 35666654 24788999999999999986432211 1222 35677788888888
Q ss_pred cc
Q 003054 458 IK 459 (852)
Q Consensus 458 ~~ 459 (852)
..
T Consensus 170 ~~ 171 (312)
T 2h9b_A 170 AS 171 (312)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 222
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=78.11 E-value=3.1 Score=44.56 Aligned_cols=120 Identities=18% Similarity=0.235 Sum_probs=70.6
Q ss_pred CCCcCCHHHHHhcCCeEEEEe-------Cch-----------------------HHHHHHhcCCCCc--ceeecCCHh--
Q 003054 567 QPTITDVKMLIKRGDNVGYQK-------GSF-----------------------VLGILKQLGFDER--KLVVYNSPE-- 612 (852)
Q Consensus 567 ~~~i~sl~dL~~~~~~vg~~~-------~s~-----------------------~~~~l~~~~~~~~--~~~~~~~~~-- 612 (852)
...|++++||. |++||+.. |+. ...+|++.+.+.. +++.++..+
T Consensus 108 ds~I~s~~DLk--Gk~Igv~~~~~~~~~gs~~~~~~~~~~~~~~~~~gs~~~~~~~~~L~~~Gl~~~dv~~v~~~~~~~~ 185 (365)
T 2de3_A 108 DSPITAAADLA--GRRIGVSASAIRILRGQLGDYLELDPWRQTLVALGSWEARALLHTLEHGELGVDDVELVPISSPGVD 185 (365)
T ss_dssp TCSCCSGGGGT--TCEEEECHHHHHHHHTCCTTGGGSCHHHHHHHHTTHHHHHHHHHHHHHTTCCGGGSEEEECCCTTTC
T ss_pred CCCCCCHHHhC--CCeEEeecccccccCCCcccccccchhhhhhhccchhhHHHHHHHHHHcCCCHHHeEEEECCCcccc
Confidence 45699999997 99999976 431 4566777776543 445555432
Q ss_pred -----------------------HHHHHhhcccccCceeEEEechhHHHHHHhhcCCceEeeccc----ccccceEEEec
Q 003054 613 -----------------------DCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCSKYAMIEPK----FKTAGFGFVFP 665 (852)
Q Consensus 613 -----------------------~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~~~~ 665 (852)
+..++|.+|+ +||++...++......+ ..+++.+. ......++++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~G~----vDA~~~~~p~~~~~~~~---g~~~l~~~~~~~~~~~~~~l~~~ 258 (365)
T 2de3_A 186 VPAEQLEESATVKGADLFPDVARGQAAVLASGD----VDALYSWLPWAGELQAT---GARPVVDLGLDERNAYASVWTVS 258 (365)
T ss_dssp CCHHHHHHSSBSSHHHHSTTHHHHHHHHHHSSS----CSEEEEEHHHHHHHHHT---TEEESSCGGGSGGGCEEEEEEEE
T ss_pred ccccccccccccccccccccchhhHHHHHhCCC----cCEEEEcchhHHHHHhC---CCEEEEeCcccCCCCceEEEEEc
Confidence 2688999999 99999887776554432 23443221 11223355555
Q ss_pred C----CCC-chhh----HHHHHHhccccC-hhHHHHHHHc
Q 003054 666 L----HSP-LVHD----VSKAILNVTEGD-KMKEIEDAWF 695 (852)
Q Consensus 666 k----~sp-l~~~----in~~il~l~e~G-~~~~i~~kw~ 695 (852)
+ ..| ++.. +.++...+.++. ...++..+++
T Consensus 259 ~~~~~~~p~~v~~~~~a~~~a~~~~~~~p~~~~~i~~~~~ 298 (365)
T 2de3_A 259 SGLVRQRPGLVQRLVDAAVDAGLWARDHSDAVTSLHAANL 298 (365)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHh
Confidence 3 244 4444 455555555542 3445555555
No 223
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=77.29 E-value=10 Score=39.52 Aligned_cols=101 Identities=9% Similarity=-0.016 Sum_probs=61.5
Q ss_pred CCcCCHHHHHhcCCeEEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHH-hhcCC
Q 003054 568 PTITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLI-GQYCS 646 (852)
Q Consensus 568 ~~i~sl~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~-~~~~~ 646 (852)
.+|++++||. |++|.+..+......++.++..+ +. -...|...+|++|. +|+...........- .+-++
T Consensus 130 ~pI~s~~Dlk--G~KiR~~~~~~~~~~~~~lGa~p---v~-m~~~Evy~ALq~G~----VDg~~~~~~~~~~~~~~ev~~ 199 (316)
T 2vpn_A 130 EPITSPEDFD--NKKIRTMTNPLLAETYKAFGATP---TP-LPWGEVYGGLQTGI----IDGQENPIFWIESGGLYEVSP 199 (316)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHHHHHTCEE---EE-CCGGGHHHHHHHTS----CSEEEEEHHHHHHTTGGGTCC
T ss_pred CCCCChHHhC--CCEEEeCCCHHHHHHHHHcCCee---ee-cCHHHHHHHHHcCC----cceeeCCHHHHHhcCHHHhhh
Confidence 4799999997 99998876666677888887532 22 35568999999999 999887654332111 11233
Q ss_pred ceEeecccccccceEEEecCCC--CchhhHHHHHHh
Q 003054 647 KYAMIEPKFKTAGFGFVFPLHS--PLVHDVSKAILN 680 (852)
Q Consensus 647 ~~~~v~~~~~~~~~~~~~~k~s--pl~~~in~~il~ 680 (852)
+...... ......+++++.. -|-+...++|..
T Consensus 200 -y~~~~~~-~~~~~~~~~n~~~~~~L~~~~q~~l~~ 233 (316)
T 2vpn_A 200 -NLTFTSH-GWFTTAMMANQDFYEGLSEEDQQLVQD 233 (316)
T ss_dssp -EEEECCC-CEEEEEEEEEHHHHHHSCHHHHHHHHH
T ss_pred -hheeccc-cccceEEEEcHHHHhcCCHHHHHHHHH
Confidence 3332222 2235566777652 244444444443
No 224
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=76.86 E-value=46 Score=33.99 Aligned_cols=68 Identities=10% Similarity=0.207 Sum_probs=46.6
Q ss_pred eeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEeeeeeecCcceeeeccccccccceEEEEE
Q 003054 378 YCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVP 457 (852)
Q Consensus 378 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~ 457 (852)
+...++..+.++.+ .+++++.. ++..+++.+|.+|++|+++...... ...+. ..|+....++++++
T Consensus 104 ~l~~~l~~f~~~~P-~v~l~l~~---------~~~~~~~~~l~~g~~Dlai~~~~~~---~~~l~-~~~L~~~~~~~v~~ 169 (313)
T 2h98_A 104 LLPEIIYLFRQQNP-EIHIELIE---------CGTKDQINALKQGKIDLGFGRLKIT---DPAIR-RIMLHKEQLKLAIH 169 (313)
T ss_dssp THHHHHHHHHHHCT-TSEEEEEE---------CCHHHHHHHHHHTSCSEEEESSCCC---CTTEE-EEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCC-CeEEEEEe---------CChHHHHHHHHcCCCCEEEEeCCCC---CCCee-EEEeeeCcEEEEEc
Confidence 44678888988887 35666554 2478899999999999998633221 11222 35677788888888
Q ss_pred cc
Q 003054 458 IK 459 (852)
Q Consensus 458 ~~ 459 (852)
..
T Consensus 170 ~~ 171 (313)
T 2h98_A 170 KH 171 (313)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 225
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=76.44 E-value=17 Score=37.40 Aligned_cols=122 Identities=11% Similarity=0.092 Sum_probs=76.5
Q ss_pred CCCccEEeeecCCCCCCC------CCCCceEeccCCchhHHHHHHHHHHHc--CCcEEEEEEEeCC-cccccHHHHHHHH
Q 003054 12 KSQVPILSFSATSPSLTS------IRSPYFFRGSLNDSSQAGAITAIIKAF--GWREAVPIYVDNQ-YGEEMIPSLTDAL 82 (852)
Q Consensus 12 ~~~vP~Is~~ats~~lt~------~~~py~fR~~p~d~~~~~aia~~l~~~--gw~~vaii~~d~~-~G~~~~~~l~~~l 82 (852)
..++|+|-.+.++|.-.. ...+++.-+ ++....+...++++++ +.++|++||...+ ......+.+++++
T Consensus 88 ~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv--~~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~~~~~~~~~~~ 165 (302)
T 3lkv_A 88 TKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGL--SDLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSA 165 (302)
T ss_dssp CSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEE--ECCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEecCCcchhhhcccccCCCCcEEEE--ECCcCHHHHHHHHHHhCCCCCEEEEEeCCCcccHHHHHHHHHHHH
Confidence 357999987777775431 122445443 2333344555666553 7899999996544 3455677888999
Q ss_pred HhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhH---HHHHHHHHHcCC
Q 003054 83 QAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLG---SRIFEKANEIGL 140 (852)
Q Consensus 83 ~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~---~~i~~~a~~~G~ 140 (852)
++.|++++.... ....++...+..+. .+.|++++....... ..+...+++.+.
T Consensus 166 ~~~g~~~v~~~~----~~~~~~~~~~~~l~-~~~d~i~~~~d~~~~~~~~~i~~~~~~~~i 221 (302)
T 3lkv_A 166 AKHGIKLVEATA----LKSADVQSATQAIA-EKSDVIYALIDNTVASAIEGMIVAANQAKT 221 (302)
T ss_dssp HHTTCEEEEEEC----SSGGGHHHHHHHHH-TTCSEEEECSCHHHHHTHHHHHHHHHHTTC
T ss_pred HHcCCEEEEEec----CChHHHHHHHHhcc-CCeeEEEEeCCcchhhHHHHHHHHHhhcCC
Confidence 999999875543 23556777776665 578898887665432 344455555554
No 226
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=76.36 E-value=7.4 Score=40.43 Aligned_cols=62 Identities=21% Similarity=0.263 Sum_probs=39.4
Q ss_pred cCCHHHHH--h---------c--CCeEEEEeCchHHH----HHHhcCCCCcceeecCC-H----hHHHHHhhcccccCce
Q 003054 570 ITDVKMLI--K---------R--GDNVGYQKGSFVLG----ILKQLGFDERKLVVYNS-P----EDCHELFQKGSVNGGI 627 (852)
Q Consensus 570 i~sl~dL~--~---------~--~~~vg~~~~s~~~~----~l~~~~~~~~~~~~~~~-~----~~~~~~l~~g~~~~g~ 627 (852)
|+|++||. + . ++.+|+..|+..+. .++.+++.. .+..... . .+..+++.+|+ +
T Consensus 108 i~si~DL~~~~~~~~f~~~~~gkg~~~~~~~G~~~~~~~~~~l~~yGL~~-~~~~~~~s~~~~~~~~~~A~~~g~----~ 182 (309)
T 1r9l_A 108 ITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELTN-TVTHNQGNYAAMMADTISRYKEGK----P 182 (309)
T ss_dssp CCBGGGGGSHHHHGGGCSSSSSSEEEECCCTTSHHHHHHHHHHHHTTCTT-TEEEECSCHHHHHHHHHHHHHTTC----C
T ss_pred CCCHHHHcCchHHHHcCCCCCCCceEEecCCCcchhHHHHHHHHhcCCCC-ceEEcCCCHHHHHHHHHHHHHCCC----C
Confidence 88999996 1 1 24577877776544 456666654 3444333 2 25668888998 7
Q ss_pred eEEEechhH
Q 003054 628 AAAFDEIPY 636 (852)
Q Consensus 628 ~a~~~~~~~ 636 (852)
+++....++
T Consensus 183 ~v~~~w~P~ 191 (309)
T 1r9l_A 183 VFYYTWTPY 191 (309)
T ss_dssp CEEEEEESS
T ss_pred EEEEeecCc
Confidence 777776554
No 227
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=75.61 E-value=3.8 Score=44.12 Aligned_cols=82 Identities=7% Similarity=0.060 Sum_probs=55.6
Q ss_pred HHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChh-
Q 003054 48 AITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS- 126 (852)
Q Consensus 48 aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~- 126 (852)
.+.++++.+| +|+.+|+....+.. ..+.+.+.|++ |+++. ...+..+.+.+.+...+..+++.++|+||-.+.+.
T Consensus 43 ~l~~~l~~~g-~r~liVtd~~~~~~-~~~~v~~~L~~-g~~~~-~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~ 118 (387)
T 3uhj_A 43 KLAAYLAPLG-KRALVLIDRVLFDA-LSERIGKSCGD-SLDIR-FERFGGECCTSEIERVRKVAIEHGSDILVGVGGGKT 118 (387)
T ss_dssp TTHHHHGGGC-SEEEEEECTTTHHH-HHHHC-------CCEEE-EEECCSSCSHHHHHHHHHHHHHHTCSEEEEESSHHH
T ss_pred HHHHHHHHcC-CEEEEEECchHHHH-HHHHHHHHHHc-CCCeE-EEEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHH
Confidence 4566778889 99999886555443 66778888998 98874 34556666778888888888889999998887653
Q ss_pred -hHHHHHH
Q 003054 127 -LGSRIFE 133 (852)
Q Consensus 127 -~~~~i~~ 133 (852)
|+.+++.
T Consensus 119 ~D~AK~iA 126 (387)
T 3uhj_A 119 ADTAKIVA 126 (387)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 5566654
No 228
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=74.75 E-value=32 Score=34.08 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=28.6
Q ss_pred HHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEE
Q 003054 382 VFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVV 428 (852)
Q Consensus 382 l~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~ 428 (852)
.++...++.|+ +++++.|. .|.....+|.+|++|+..
T Consensus 21 ~v~~~l~k~Gi--~veiv~F~--------dy~~pN~AL~~G~iD~n~ 57 (246)
T 4ef1_A 21 HVKPLLEKEGV--KLEVTTYT--------DYVLPNKALESGDIDANY 57 (246)
T ss_dssp HHHHHHHHTTE--EEEEEECS--------SSSHHHHHHHHTSCSEEE
T ss_pred HHHHHHHhcCC--EEEEEEeC--------CchhHHHHHHCCCCCEEe
Confidence 34556666785 77778877 688888999999999975
No 229
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=74.15 E-value=38 Score=35.73 Aligned_cols=87 Identities=9% Similarity=-0.015 Sum_probs=49.2
Q ss_pred cceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHH-----------------hhcCCceEeecc-----cccccce
Q 003054 603 RKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLI-----------------GQYCSKYAMIEP-----KFKTAGF 660 (852)
Q Consensus 603 ~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~-----------------~~~~~~~~~v~~-----~~~~~~~ 660 (852)
.+++...+..+.+..+..|+ +++.+.-...+...- ..+.++..++.. ...+.-+
T Consensus 221 ~k~v~~~~v~~~l~~v~~G~----aDag~vy~S~a~~~~l~~v~lP~~~n~~~~~~~~~y~~v~v~~~~~~~~~~~Pi~y 296 (354)
T 3k6v_A 221 SKIMLRSMEVELSSALETGE----IDYLYIYRSVAEQHGFEYVALPPAIDLSSLEYADNYSKVQVEMVNGEVVTGSPIVY 296 (354)
T ss_dssp TTEEEESSHHHHHHHHHHTS----CSEEEEEHHHHHHHTCEEEECCTTTSSCCGGGHHHHTTEEEECTTSCEEECCCCEE
T ss_pred ceeEeCCCHHHHHHHHHcCC----CCEEEEEhhhhhhcCCcEEeCChhhccccccccccccceeeeccccccccCCceeE
Confidence 45666678889999999999 888776654443220 000012222211 1223467
Q ss_pred EEEecCCCCchhhHHHHHHhccccChhHHHHHHH
Q 003054 661 GFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAW 694 (852)
Q Consensus 661 ~~~~~k~spl~~~in~~il~l~e~G~~~~i~~kw 694 (852)
.+++.|+++-.+.-.+++..|... .-+.+..++
T Consensus 297 ~~ai~k~a~~~~~A~~Fi~fL~S~-eaq~i~~~~ 329 (354)
T 3k6v_A 297 GVTIPNNAENSELATEFVALLLGE-TGQQIFIEN 329 (354)
T ss_dssp EEECCTTCTTHHHHHHHHHHHHSH-HHHHHHHHT
T ss_pred eEEeecCCCCHHHHHHHHHHHcCH-HHHHHHHHC
Confidence 888999987655555555544432 334555443
No 230
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=73.11 E-value=11 Score=38.52 Aligned_cols=40 Identities=18% Similarity=0.305 Sum_probs=29.0
Q ss_pred HHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEee
Q 003054 380 VDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGD 430 (852)
Q Consensus 380 ~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~ 430 (852)
..+.+.+.+.+|+++++ .+. +-.-+..+|.+|++|+....
T Consensus 32 ~~i~~~~Le~~G~~Ve~--~~~---------~~~~~~~AL~~G~iD~~~e~ 71 (280)
T 3tmg_A 32 TNVLKVVFEKMGYNAEI--FSV---------TTSIMYQYLASGKIDGTVSS 71 (280)
T ss_dssp HHHHHHHHHHTTEEEEE--EEC---------CHHHHHHHHHTTSSSEEEEE
T ss_pred HHHHHHHHHHCCCceEE--EEC---------CcHHHHHHHHCCCCcEEEec
Confidence 46777777788976555 332 24567899999999998753
No 231
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=72.85 E-value=77 Score=31.33 Aligned_cols=70 Identities=11% Similarity=0.030 Sum_probs=45.3
Q ss_pred eHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEeeeeeecCcc-eeeeccccccccceEEEEE
Q 003054 379 CVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFNRS-NYVDFTLPYTESGVSMIVP 457 (852)
Q Consensus 379 ~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~~~it~~r~-~~vdft~p~~~~~~~~vv~ 457 (852)
-.+++..+.++.+ .+++++.. ++..+++.+|.+|++|+++........+. ..+. ..|+....++++++
T Consensus 42 l~~~l~~f~~~~P-~i~v~i~~---------~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~~ 110 (290)
T 1twy_A 42 MDVLAEKYNQQHP-ETYVAVQG---------VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVVN 110 (290)
T ss_dssp HHHHHHHHHHHCT-TCEEEEEE---------SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEEC
T ss_pred HHHHHHHHHhhCC-CceEEEEe---------cCcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEEC
Confidence 3467888888875 24555544 25678999999999999886433222110 1222 35677788888888
Q ss_pred cc
Q 003054 458 IK 459 (852)
Q Consensus 458 ~~ 459 (852)
..
T Consensus 111 ~~ 112 (290)
T 1twy_A 111 QA 112 (290)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 232
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=72.14 E-value=6.8 Score=37.15 Aligned_cols=65 Identities=8% Similarity=0.058 Sum_probs=41.6
Q ss_pred eeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEeeeeeecCcceeeeccccccccceEEEEE
Q 003054 378 YCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVP 457 (852)
Q Consensus 378 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~ 457 (852)
+-.+++..+.++.+- +++++... +. +.+|.+|++|+++...... ...+. +.++....++++++
T Consensus 21 ~l~~~l~~f~~~~P~-v~l~i~~~-----------~~-~~~l~~g~~D~~i~~~~~~---~~~~~-~~~l~~~~~~~v~~ 83 (213)
T 3hhf_B 21 LLAPLAAKFNERYPH-IRLSLVSS-----------EG-YINLIERKVDIALRAGELD---DSGLR-ARHLFDSRFRVIAS 83 (213)
T ss_dssp THHHHHHHHHHHCTT-EEEEEECC-----------ST-THHHHTTSSSEEEECC--C---CSSEE-EEEEEEECEEEEEC
T ss_pred HHHHHHHHHHHHCCC-cEEEEEeC-----------Cc-HHHHHhCCccEEEEEecCC---Cccce-EEeeecceEEEEeC
Confidence 456889999998873 56655421 11 3458899999998643222 22232 46778888888888
Q ss_pred cc
Q 003054 458 IK 459 (852)
Q Consensus 458 ~~ 459 (852)
..
T Consensus 84 ~~ 85 (213)
T 3hhf_B 84 PE 85 (213)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 233
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=71.64 E-value=9.3 Score=39.35 Aligned_cols=79 Identities=8% Similarity=0.051 Sum_probs=60.8
Q ss_pred cEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhh-HHHHHHHH
Q 003054 59 REAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSL-GSRIFEKA 135 (852)
Q Consensus 59 ~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~-~~~i~~~a 135 (852)
++|+++.. +++|.....+.+.+++++.|.++..... ..+.......+..+.+.++|.||+...... ....++++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA---NGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEA 79 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 57888884 4778899999999999999998875432 233555667788888899999998876544 36788888
Q ss_pred HHcCC
Q 003054 136 NEIGL 140 (852)
Q Consensus 136 ~~~G~ 140 (852)
.+.|+
T Consensus 80 ~~~~i 84 (313)
T 3m9w_A 80 KQEGI 84 (313)
T ss_dssp HTTTC
T ss_pred HHCCC
Confidence 88886
No 234
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=71.12 E-value=17 Score=38.49 Aligned_cols=109 Identities=11% Similarity=0.036 Sum_probs=70.2
Q ss_pred CceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhh
Q 003054 33 PYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLF 112 (852)
Q Consensus 33 py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~ 112 (852)
|+-+...+... ..+.++++.+|.+++.+++....+. ...+.+.+.|++.|+++...... ++.+.+.+... ..++
T Consensus 12 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~-~~~~~~~v~~~-~~~~ 85 (354)
T 3ce9_A 12 PLILEVGNNKI---YNIGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETV-KNIDFDEIGTN-AFKI 85 (354)
T ss_dssp CSEEEEESSCG---GGHHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEE-CCCBHHHHHHH-HTTS
T ss_pred CcEEEECCCHH---HHHHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEecC-CCCCHHHHHHH-HHhh
Confidence 44444444432 2356777778889999998555443 46688888999899887544322 44556677777 8888
Q ss_pred cCCceEEEEEeCh--hhHHHHHHHHHHcCCcccceEEEEcCc
Q 003054 113 TMQTRVFILHMLP--SLGSRIFEKANEIGLMNKGCVWIMTDG 152 (852)
Q Consensus 113 ~~~~~viv~~~~~--~~~~~i~~~a~~~G~~~~~~vwi~~~~ 152 (852)
+.++|+||-.+.+ -|+.+++... .|+ .++-|-|..
T Consensus 86 ~~~~d~IIavGGGsv~D~aK~vA~~--~~~---p~i~IPTT~ 122 (354)
T 3ce9_A 86 PAEVDALIGIGGGKAIDAVKYMAFL--RKL---PFISVPTST 122 (354)
T ss_dssp CTTCCEEEEEESHHHHHHHHHHHHH--HTC---CEEEEESCC
T ss_pred hcCCCEEEEECChHHHHHHHHHHhh--cCC---CEEEecCcc
Confidence 8899999977654 4667766533 343 344554443
No 235
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=69.71 E-value=76 Score=30.39 Aligned_cols=66 Identities=12% Similarity=0.038 Sum_probs=47.6
Q ss_pred eeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEeeeeeecCcceeeeccccccccceEEEEE
Q 003054 378 YCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVP 457 (852)
Q Consensus 378 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~ 457 (852)
+...++..+.++.+ .+++++.. ++..+++.+|.+|++|+++..... ..+ -..++....++++++
T Consensus 41 ~l~~~l~~f~~~~P-~i~l~i~~---------~~~~~~~~~L~~g~~Dl~i~~~~~-----~~~-~~~~l~~~~~~~v~~ 104 (238)
T 3onm_A 41 LLPFLLNRVATLYP-RLAIDVRV---------KRSPFIADMLSSGEVDLAITTAKV-----DSH-PHVILRTSPTLWYCS 104 (238)
T ss_dssp HHHHHHHHHHHHCT-TCCEEEEE---------CCHHHHHHHHHHTSCSEEEECSCC------CC-CEEEEEEECEEEEEE
T ss_pred HHHHHHHHHHHHCC-CcEEEEEE---------CCHHHHHHHHHCCCccEEEEecCC-----CCc-ceEEeecCCEEEEEc
Confidence 44688889988887 35666654 357899999999999999864321 112 256788888899988
Q ss_pred cc
Q 003054 458 IK 459 (852)
Q Consensus 458 ~~ 459 (852)
..
T Consensus 105 ~~ 106 (238)
T 3onm_A 105 VD 106 (238)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 236
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=69.61 E-value=9.2 Score=38.46 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=30.7
Q ss_pred eeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEee
Q 003054 378 YCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGD 430 (852)
Q Consensus 378 ~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~ 430 (852)
+...|.+.+.+.+|+++++ .+. +-.-+..+|.+|++|+....
T Consensus 16 i~~~i~~~~Le~~G~~Ve~--~~~---------~~~~~~~al~~G~iD~~~e~ 57 (256)
T 3l6g_A 16 ASINVLTQAMKEHGFDVKT--TAL---------DNAVAWQTVANGQADGMVSA 57 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEE--EEC---------CHHHHHHHHHTTSSSEEEEE
T ss_pred HHHHHHHHHHHHCCCceEE--EEC---------ChHHHHHHHHCCCCeEEEcc
Confidence 3457888888888976555 332 34678899999999998753
No 237
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=69.53 E-value=30 Score=35.50 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=27.1
Q ss_pred HHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEE
Q 003054 383 FKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVV 428 (852)
Q Consensus 383 ~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~ 428 (852)
++...++.|+ +++++.+. +|.....+|.+|++|+..
T Consensus 56 ~~~~~~~~G~--~Ve~~~f~--------~~~~~~~AL~~G~iD~~~ 91 (295)
T 1p99_A 56 VKELAKKDDI--DVEIKHFS--------DYNLPNKALNDGDIDMNA 91 (295)
T ss_dssp HHHHHGGGTC--CEEEEECS--------STTSHHHHHHTTSSSEEE
T ss_pred HHHHHHHcCC--eEEEEEeC--------ChHHHHHHHHcCCCCEEc
Confidence 3445555685 56677776 688999999999999975
No 238
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=69.20 E-value=16 Score=34.19 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=50.0
Q ss_pred CcEEEEEEEeCCccc---ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcC-CceEEEEEeC
Q 003054 58 WREAVPIYVDNQYGE---EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM-QTRVFILHML 124 (852)
Q Consensus 58 w~~vaii~~d~~~G~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~-~~~viv~~~~ 124 (852)
--+|+||...|+-|+ .....+.+.|++.|.++.....++. +.+++...|.+..+. +.|+||..+-
T Consensus 10 ~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~D--d~~~i~~~l~~a~~~~~~DlVittGG 78 (172)
T 1mkz_A 10 PTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKE--NRYAIRAQVSAWIASDDVQVVLITGG 78 (172)
T ss_dssp CCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHHSSSCCEEEEESC
T ss_pred CCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 358999998887663 2356788899999999988877763 367788888887765 6899988854
No 239
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=69.12 E-value=12 Score=37.59 Aligned_cols=59 Identities=14% Similarity=-0.007 Sum_probs=38.4
Q ss_pred HHHHHhcCCeEEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEec-hhHHH
Q 003054 573 VKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDE-IPYMK 638 (852)
Q Consensus 573 l~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~-~~~~~ 638 (852)
++||. |++|++..++....++-+.-....+++. -...+...++.+|+ +||.+.. .+.+.
T Consensus 91 ~~dLk--Gk~Ia~~~~~~~~~~ll~~ll~~~~~~~-~~~~~~~~al~~G~----vDa~~~~~ep~~~ 150 (272)
T 2czl_A 91 LQALE--GLRVAVPGRHTTAYFLLSLYAQGFVPVE-VRYDRILPMVAQGE----VEAGLIIHESRFT 150 (272)
T ss_dssp CSCCT--TCEEEESCTTSHHHHHHHHHCSSCEEEE-CCGGGHHHHHHTTS----SSEEEECTTHHHH
T ss_pred hHHhC--CCEEEeCCCCchHHHHHHHHhccCceee-cChHHHHHHHHCCC----CCEEEEecchhhh
Confidence 67886 9999998666554443331122224433 34558899999999 9998874 55555
No 240
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=68.42 E-value=15 Score=37.21 Aligned_cols=79 Identities=9% Similarity=0.113 Sum_probs=60.4
Q ss_pred cEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh-hhHHHHHHHH
Q 003054 59 REAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-SLGSRIFEKA 135 (852)
Q Consensus 59 ~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~-~~~~~i~~~a 135 (852)
++|+++.. ++.|.....+.+.+++++.|.++..... ..+.......+..+.+.++|.||+.... ......++++
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA---GRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKI 82 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 57888885 4567788899999999999998865532 2335556777888888899999987654 4567788888
Q ss_pred HHcCC
Q 003054 136 NEIGL 140 (852)
Q Consensus 136 ~~~G~ 140 (852)
.+.|+
T Consensus 83 ~~~~i 87 (291)
T 3l49_A 83 NDAGI 87 (291)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88886
No 241
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=68.20 E-value=6.7 Score=41.29 Aligned_cols=81 Identities=9% Similarity=0.072 Sum_probs=59.4
Q ss_pred CCcEEEEEEEe---CCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhc--CCceEEEEEeChhhHHHH
Q 003054 57 GWREAVPIYVD---NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT--MQTRVFILHMLPSLGSRI 131 (852)
Q Consensus 57 gw~~vaii~~d---~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~viv~~~~~~~~~~i 131 (852)
+-.+|+++..+ ++|.....+.+.+++++.|.++..... +.+.......+.++.+ .++|.||+.........+
T Consensus 2 ~~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~ 78 (350)
T 3h75_A 2 SLTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYA---ERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQI 78 (350)
T ss_dssp -CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHH
T ss_pred CCCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEEC---CCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHH
Confidence 34689999853 268888999999999999998865421 2234445566777776 599999998655566778
Q ss_pred HHHHHHcCC
Q 003054 132 FEKANEIGL 140 (852)
Q Consensus 132 ~~~a~~~G~ 140 (852)
++++.+.|+
T Consensus 79 ~~~~~~~gi 87 (350)
T 3h75_A 79 LRLSQGSGI 87 (350)
T ss_dssp HHHHTTSCC
T ss_pred HHHHHhCCC
Confidence 888888886
No 242
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=68.11 E-value=17 Score=38.77 Aligned_cols=96 Identities=13% Similarity=0.042 Sum_probs=65.0
Q ss_pred HHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh--
Q 003054 48 AITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-- 125 (852)
Q Consensus 48 aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~-- 125 (852)
.+.++++.+| +++.+++....+. ...+.+.+.|++.|+++.. ..+..+.+.+.+...+..+++.++|+||-.+.+
T Consensus 22 ~l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGsv 98 (370)
T 1jq5_A 22 KIANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGEASRNEVERIANIARKAEAAIVIGVGGGKT 98 (370)
T ss_dssp GHHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHH
T ss_pred HHHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChHH
Confidence 3566777788 9999998554443 4678888999999988753 334434445677778888888999999977654
Q ss_pred hhHHHHHHHHHHcCCcccceEEEEcC
Q 003054 126 SLGSRIFEKANEIGLMNKGCVWIMTD 151 (852)
Q Consensus 126 ~~~~~i~~~a~~~G~~~~~~vwi~~~ 151 (852)
-|+.+++... .|+ .++-|-|.
T Consensus 99 ~D~aK~iA~~--~~~---p~i~IPTT 119 (370)
T 1jq5_A 99 LDTAKAVADE--LDA---YIVIVPTA 119 (370)
T ss_dssp HHHHHHHHHH--HTC---EEEEEESS
T ss_pred HHHHHHHHHh--cCC---CEEEeccc
Confidence 4667766532 343 34555544
No 243
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=66.40 E-value=16 Score=36.40 Aligned_cols=79 Identities=13% Similarity=0.039 Sum_probs=58.0
Q ss_pred cEEEEEEEe--CCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHH
Q 003054 59 REAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKAN 136 (852)
Q Consensus 59 ~~vaii~~d--~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~ 136 (852)
+.|+++..+ ++|.....+.+.+++++.|.++..... +.+.......+..+.+.++|.||+....+.....++++.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASS---DDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQ 79 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHH
Confidence 578888843 567888899999999999998865432 223455667788888899999998765533355677777
Q ss_pred HcCC
Q 003054 137 EIGL 140 (852)
Q Consensus 137 ~~G~ 140 (852)
+.|+
T Consensus 80 ~~~i 83 (272)
T 3o74_A 80 DKGL 83 (272)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 7776
No 244
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=65.98 E-value=9.2 Score=39.46 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=37.5
Q ss_pred cCCHHHHHhc-----CCeEEEEeCchHHH----HHH--hcCCCCcceeecCCHh-----HHHHHhhcccccCceeEEEec
Q 003054 570 ITDVKMLIKR-----GDNVGYQKGSFVLG----ILK--QLGFDERKLVVYNSPE-----DCHELFQKGSVNGGIAAAFDE 633 (852)
Q Consensus 570 i~sl~dL~~~-----~~~vg~~~~s~~~~----~l~--~~~~~~~~~~~~~~~~-----~~~~~l~~g~~~~g~~a~~~~ 633 (852)
|+|++||.+. |+.+|+..|+.... .|+ .+++.. +....... +...++.+|+ ++++...
T Consensus 105 I~si~DLk~~~~~~~gk~~g~~~G~~~~~~~~~~l~~~~yGL~d--~~~v~~~~~~~~a~~~~A~~~g~----~~v~~~w 178 (298)
T 2rin_A 105 IKDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLKG--FEVVESSEQGMLAQVARAEKSGD----PIVFLGW 178 (298)
T ss_dssp CCBGGGSGGGHHHHTSEEECCSTTCHHHHHHHHHHHHTGGGCTT--CEEECCCHHHHHHHHHHHHHTTC----CCEEEEE
T ss_pred CCCHHHHHHHHHHcCCeEECCCCChHHHHHHHHHhhhhcCCCCC--ceeccCCHHHHHHHHHHHHHCCC----CEEEEEe
Confidence 8889998632 77888877776543 244 455532 33333322 3357788888 8877776
Q ss_pred hhH
Q 003054 634 IPY 636 (852)
Q Consensus 634 ~~~ 636 (852)
.+.
T Consensus 179 ~p~ 181 (298)
T 2rin_A 179 EPH 181 (298)
T ss_dssp ESS
T ss_pred ccC
Confidence 555
No 245
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=65.69 E-value=8.4 Score=39.43 Aligned_cols=80 Identities=16% Similarity=0.173 Sum_probs=59.6
Q ss_pred cEEEEEE--EeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChh-hHHHHHHHH
Q 003054 59 REAVPIY--VDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS-LGSRIFEKA 135 (852)
Q Consensus 59 ~~vaii~--~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~-~~~~i~~~a 135 (852)
++++++. .+++|.....+.+.+++++.|.++.... ....+.......+..+.+.++|.||+..... .....++++
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRG--AAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKA 82 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEE--CSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeC--CCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHH
Confidence 6788887 3457788889999999999999886532 2223455667778888888999999876543 346678888
Q ss_pred HHcCC
Q 003054 136 NEIGL 140 (852)
Q Consensus 136 ~~~G~ 140 (852)
.+.|+
T Consensus 83 ~~~~i 87 (305)
T 3g1w_A 83 VDAGI 87 (305)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88886
No 246
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=64.94 E-value=56 Score=34.41 Aligned_cols=127 Identities=13% Similarity=0.024 Sum_probs=70.2
Q ss_pred hHHHHhcCCC-CccEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHH-HH-cCCcEEEEEEEe-CCcccccHHHHH
Q 003054 4 NFIIQLGNKS-QVPILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAII-KA-FGWREAVPIYVD-NQYGEEMIPSLT 79 (852)
Q Consensus 4 ~~v~~i~~~~-~vP~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l-~~-~gw~~vaii~~d-~~~G~~~~~~l~ 79 (852)
.++..++.++ ++|++......+ ...-..++|+ ..++.-++-++ .. -.-++|++|... .+.-......|.
T Consensus 99 ~~~~~vA~~~Pdv~fv~id~~~~--~~Nv~sv~~~-----~~eg~ylaG~~A~~~tk~~kIGfVgg~~~p~v~~~~~GF~ 171 (356)
T 3s99_A 99 DPTVKVAKKFPDVKFEHATGYKT--ADNMSAYNAR-----FYEGRYVQGVIAAKMSKKGIAGYIGSVPVPEVVQGINSFM 171 (356)
T ss_dssp HHHHHHHTTCTTSEEEEESCCCC--BTTEEEEEEC-----HHHHHHHHHHHHHHHCSSCEEEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCEEEEEecccc--CCcEEEEEec-----hhHHHHHHHHHHHHhcCCCEEEEECCCccHHHHHHHHHHH
Confidence 4556667776 788776543211 1111123333 34555444433 11 124799999843 222334567788
Q ss_pred HHHHhCCceeeeeeecCCCCCh-HHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCC
Q 003054 80 DALQAIDTRVPYRSVISPLATD-DQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGL 140 (852)
Q Consensus 80 ~~l~~~g~~v~~~~~~~~~~~~-~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~ 140 (852)
+.++..+.++.....+.-+-.+ ..=......+.+.++|+|+.+.... .++++|++.|.
T Consensus 172 ~G~k~~np~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 172 LGAQSVNPDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRGI 230 (356)
T ss_dssp HHHHTTCTTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTTC
T ss_pred HHHHHHCCCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcCC
Confidence 8888877655444333321112 2223344556667999998876553 57899999885
No 247
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=64.54 E-value=16 Score=38.02 Aligned_cols=81 Identities=5% Similarity=-0.021 Sum_probs=58.3
Q ss_pred CCcEEEEEEEe----CCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHH
Q 003054 57 GWREAVPIYVD----NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIF 132 (852)
Q Consensus 57 gw~~vaii~~d----~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~ 132 (852)
.-+.|+++..+ ++|.......+.+++++.|.++..... ..+.......+..+.+.+.|.||+.........+.
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~ 136 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG---KHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEID 136 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEEC---TTSHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHH
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEeCCCCChHHHH
Confidence 45689988855 567788899999999999998765432 22344455677888888999999876554445566
Q ss_pred HHHHHcCC
Q 003054 133 EKANEIGL 140 (852)
Q Consensus 133 ~~a~~~G~ 140 (852)
+.+.+.|+
T Consensus 137 ~~~~~~~i 144 (338)
T 3dbi_A 137 DIIDAHSQ 144 (338)
T ss_dssp HHHHHCSS
T ss_pred HHHHcCCC
Confidence 67777775
No 248
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=64.43 E-value=13 Score=37.73 Aligned_cols=84 Identities=8% Similarity=0.053 Sum_probs=61.1
Q ss_pred CCcEEEEEEE---eCCcccccHHHHHHHHHhC-CceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChh-hHHHH
Q 003054 57 GWREAVPIYV---DNQYGEEMIPSLTDALQAI-DTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS-LGSRI 131 (852)
Q Consensus 57 gw~~vaii~~---d~~~G~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~-~~~~i 131 (852)
.-++|+++.. ++.|-....+.+.+++++. |..+..........+.......+..+.+.++|.||+..... .....
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~ 86 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGF 86 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHH
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHH
Confidence 3467888874 4568888899999999998 77766544322223455667778888899999999887654 45677
Q ss_pred HHHHHHcCC
Q 003054 132 FEKANEIGL 140 (852)
Q Consensus 132 ~~~a~~~G~ 140 (852)
++++.+.|+
T Consensus 87 ~~~~~~~~i 95 (304)
T 3gbv_A 87 TDALNELGI 95 (304)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHCCC
Confidence 888888886
No 249
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=64.10 E-value=16 Score=36.61 Aligned_cols=80 Identities=11% Similarity=0.160 Sum_probs=50.4
Q ss_pred CceEEEeeecccCcccceEEeeCCCCCCCceEEEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCc
Q 003054 344 EKKLRIGVPVKKGFSDFVNVTIDPKTQEPTSVTGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGE 423 (852)
Q Consensus 344 ~~~lrv~v~~~~~~~~~~~~~~d~~~~~~~~~~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~ 423 (852)
.++++||+. +.+ ...+..+++..+.++.+- ++++..... ...+|.+|+
T Consensus 90 ~~~l~Ig~~--~~~-----------------~~~~l~~~l~~f~~~~P~-v~i~~~~~~------------~~~~l~~~~ 137 (291)
T 3szp_A 90 SGRIRISAP--SNL-----------------TKRMMMPMFNAFMEKYPD-IHIELMMSN------------QADDLDPTE 137 (291)
T ss_dssp CEEEEEEEE--TTT-----------------HHHHTHHHHHHHHHHCTT-EEEEEEEEC------------SCSCCCGGG
T ss_pred ceEEEEecc--HHH-----------------HHHHHHHHHHHHHHHCCC-eEEEEEEec------------CccCccccC
Confidence 467999997 221 123456888999888873 566655322 134788999
Q ss_pred ccEEEeeeeeecCcceeeeccccccccceEEEEEcc
Q 003054 424 FDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIK 459 (852)
Q Consensus 424 ~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~ 459 (852)
+|+++...... ...+. ..|+....++++++..
T Consensus 138 ~Dl~i~~~~~~---~~~l~-~~~l~~~~~~~v~~~~ 169 (291)
T 3szp_A 138 WDVIFRVGPQR---DSSLI-ARKIGEVKDILVASPQ 169 (291)
T ss_dssp CSEEEEESCCC---CTTCE-EEEEEEECEEEEECHH
T ss_pred ceEEEEecCCC---CCCee-EEEecccceEEEECHH
Confidence 99998643222 22222 3567778888888754
No 250
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=63.98 E-value=5.7 Score=41.06 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=47.2
Q ss_pred cccchhHHHHHHHhhhcc--ccccccchhhHHHHHHHHHHHHHHHHhhhhcccee
Q 003054 509 QQVGTSFWFSFSTMVFSQ--RERVISNLARIVVIVWCFVVLILTQSYTASLTSLL 561 (852)
Q Consensus 509 ~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~L 561 (852)
.++.+++||++.++...| ...|.+..+|++.++|.++++.+...+.+.+...|
T Consensus 114 w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l 168 (309)
T 3um7_A 114 WDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRL 168 (309)
T ss_dssp CSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999877 34689999999999999999999999999888776
No 251
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=63.74 E-value=63 Score=26.83 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=67.2
Q ss_pred eEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhc-
Q 003054 35 FFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT- 113 (852)
Q Consensus 35 ~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~- 113 (852)
+|-...+|...-+.|+.-++..| -+|+++|+|.+--+ ...--+.+++.|+.|-.. .+..||..-+..|-.
T Consensus 4 ifvvfssdpeilkeivreikrqg-vrvvllysdqdekr--rrerleefekqgvdvrtv------edkedfrenireiwer 74 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQG-VRVVLLYSDQDEKR--RRERLEEFEKQGVDVRTV------EDKEDFRENIREIWER 74 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCSCHHH--HHHHHHHHHTTTCEEEEC------CSHHHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHhCC-eEEEEEecCchHHH--HHHHHHHHHHcCCceeee------ccHHHHHHHHHHHHHh
Confidence 35555677888888888888888 47788997765221 222234677889876432 246889988888764
Q ss_pred -CCceEEEEEeCh--hhHHHHHHHHHHcCC
Q 003054 114 -MQTRVFILHMLP--SLGSRIFEKANEIGL 140 (852)
Q Consensus 114 -~~~~viv~~~~~--~~~~~i~~~a~~~G~ 140 (852)
.+-|++++.+.. .-...++..|++.|.
T Consensus 75 ypqldvvvivttddkewikdfieeakergv 104 (162)
T 2l82_A 75 YPQLDVVVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp CTTCCEEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred CCCCcEEEEEecCcHHHHHHHHHHHHhcCc
Confidence 455777666543 457899999999997
No 252
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=63.36 E-value=8.1 Score=39.89 Aligned_cols=54 Identities=15% Similarity=0.192 Sum_probs=42.3
Q ss_pred ccchhHHHHHHHhhhcc-cc-ccccchhh------HHHHHHHHHHHHHHHHhhhhccceeee
Q 003054 510 QVGTSFWFSFSTMVFSQ-RE-RVISNLAR------IVVIVWCFVVLILTQSYTASLTSLLTV 563 (852)
Q Consensus 510 ~~~~~~~~~~~~l~~~~-~~-~~~s~~~R------~v~~~w~~~~lil~~~Yta~L~s~Lt~ 563 (852)
++.+++||++.++...| ++ .|.+..+| ++.++|+++++.+.++-.+.+.+.+..
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~ 285 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRV 285 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999876 33 45565565 599999999999999888777766543
No 253
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=62.34 E-value=33 Score=35.07 Aligned_cols=100 Identities=13% Similarity=0.027 Sum_probs=63.9
Q ss_pred cCCHHHHHhcCCeEEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCCceE
Q 003054 570 ITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCSKYA 649 (852)
Q Consensus 570 i~sl~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~~~ 649 (852)
+.++++|. |++|+..--...+.||.+.+.+-.-+..+.+.|- +-..|- .|++++-.....-+.++ ++.
T Consensus 116 ~~~~~~l~--g~RIATkyp~l~~~yf~~~gi~~~ii~l~GsvE~---aP~~Gl----ADaIvDivsTG~TLraN---gL~ 183 (299)
T 1h3d_A 116 WDGPLSLN--GKRIATSYPHLLKRYLDQKGISFKSCLLNGSVEV---APRAGL----ADAICDLVSTGATLEAN---GLR 183 (299)
T ss_dssp CCCGGGGT--TCEEEESCHHHHHHHHHHHTCCCEEEECSSCTTH---HHHTTS----CSEEEEEESSCHHHHHT---TEE
T ss_pred CCChHHhC--CCEEEeCcHHHHHHHHHHcCCcEEEEECCCceee---ccCCCc----cceEEecccCHHHHHHC---CCE
Confidence 55677875 8899987777889999888887655566667763 334566 77887765544444433 355
Q ss_pred eecccccccceEEEecCCC--Cc-hhhHHHHHHhcc
Q 003054 650 MIEPKFKTAGFGFVFPLHS--PL-VHDVSKAILNVT 682 (852)
Q Consensus 650 ~v~~~~~~~~~~~~~~k~s--pl-~~~in~~il~l~ 682 (852)
.++.. ....-.++.++.+ +. .+.+++.+.++.
T Consensus 184 ~ie~I-~~SsA~LI~n~~s~~~~k~~~i~~l~~rl~ 218 (299)
T 1h3d_A 184 EVEVI-YRSKACLIQRDGEMEESKQQLIDKLLTRIQ 218 (299)
T ss_dssp EEEEE-EEECEEEEEESSCCCHHHHHHHHHHHHHHH
T ss_pred EeEEE-EeeEEEEEEeccccChhHHHHHHHHHHHHH
Confidence 66444 4445566667776 22 245666666664
No 254
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=61.79 E-value=15 Score=37.89 Aligned_cols=79 Identities=10% Similarity=0.053 Sum_probs=59.7
Q ss_pred cEEEEEEEe--CCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChh-hHHHHHHHH
Q 003054 59 REAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS-LGSRIFEKA 135 (852)
Q Consensus 59 ~~vaii~~d--~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~-~~~~i~~~a 135 (852)
++|+++..+ ++|.....+.+.+++++.|.++..... ..+.......+..+.+.++|.||+..... .....++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYA---DDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQA 80 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeC---CCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHH
Confidence 578888843 678888999999999999998765531 23344556677888888999999876544 456778888
Q ss_pred HHcCC
Q 003054 136 NEIGL 140 (852)
Q Consensus 136 ~~~G~ 140 (852)
.+.|+
T Consensus 81 ~~~gi 85 (330)
T 3uug_A 81 GEQGI 85 (330)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88886
No 255
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=61.35 E-value=25 Score=35.46 Aligned_cols=79 Identities=11% Similarity=0.084 Sum_probs=59.6
Q ss_pred cEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChh----hHHHHH
Q 003054 59 REAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS----LGSRIF 132 (852)
Q Consensus 59 ~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~----~~~~i~ 132 (852)
+.|+++.. ++.|.....+.+.+++++.|.++..... ..+...-...+..+.+.++|.||+..... .....+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 92 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTST---NNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYY 92 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHH
Confidence 78999984 4568888999999999999998865432 22345566778888889999999876532 345677
Q ss_pred HHHHHcCC
Q 003054 133 EKANEIGL 140 (852)
Q Consensus 133 ~~a~~~G~ 140 (852)
+++.+.|+
T Consensus 93 ~~~~~~~i 100 (298)
T 3tb6_A 93 LNLEKNGI 100 (298)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 88888886
No 256
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=61.04 E-value=8.7 Score=39.80 Aligned_cols=80 Identities=10% Similarity=0.018 Sum_probs=57.0
Q ss_pred cEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhh-HHHHHHHH
Q 003054 59 REAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSL-GSRIFEKA 135 (852)
Q Consensus 59 ~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~-~~~i~~~a 135 (852)
++|+++.. +++|.....+.+.+++++.|.++.... +...+.......+..+.+.++|+|++...... ....++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a 81 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDG--PTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA 81 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECC--CSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 57888863 466788888999999999998775421 12233445566778888889999988765433 36678888
Q ss_pred HHcCC
Q 003054 136 NEIGL 140 (852)
Q Consensus 136 ~~~G~ 140 (852)
++.|+
T Consensus 82 ~~~gi 86 (316)
T 1tjy_A 82 MQRGV 86 (316)
T ss_dssp HHTTC
T ss_pred HHCcC
Confidence 88886
No 257
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=60.66 E-value=20 Score=36.25 Aligned_cols=80 Identities=9% Similarity=0.144 Sum_probs=59.5
Q ss_pred CcEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChh-hHHHHHHH
Q 003054 58 WREAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS-LGSRIFEK 134 (852)
Q Consensus 58 w~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~-~~~~i~~~ 134 (852)
-++|+++.. +++|.....+.+.+++++.|.++..... +.+.......+..+.+.++|.||+..... .....+++
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~ 84 (293)
T 3l6u_A 8 RNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATS---QNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIEE 84 (293)
T ss_dssp -CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---SSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHH
T ss_pred CcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECC---CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHH
Confidence 467888884 4567788899999999999998875432 23355566778888889999999876543 34577888
Q ss_pred HHHcCC
Q 003054 135 ANEIGL 140 (852)
Q Consensus 135 a~~~G~ 140 (852)
+.+.|+
T Consensus 85 ~~~~~i 90 (293)
T 3l6u_A 85 AKKAGI 90 (293)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 888886
No 258
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=60.64 E-value=12 Score=39.24 Aligned_cols=60 Identities=10% Similarity=0.060 Sum_probs=50.0
Q ss_pred ccccchhHHHHHHHhhhcc-cc-ccc--cchhhHHHHHHHHHHHHHHHHhhhhccceeeecccC
Q 003054 508 GQQVGTSFWFSFSTMVFSQ-RE-RVI--SNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQ 567 (852)
Q Consensus 508 ~~~~~~~~~~~~~~l~~~~-~~-~~~--s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 567 (852)
..++..+|||++.++...| +. .|. +..+|+++.+-.++++++.+.-++-+.+-++.+...
T Consensus 89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 3578899999999999877 33 443 677999999999999999999999999888776543
No 259
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=59.72 E-value=16 Score=37.24 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=56.3
Q ss_pred cEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChh-hHHHHHHHH
Q 003054 59 REAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS-LGSRIFEKA 135 (852)
Q Consensus 59 ~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~-~~~~i~~~a 135 (852)
++|+++.. +++|.....+.+.+++++.|.++.... +...+.......+.++.+.++|.||+..... .....++++
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVG--PSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKA 82 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC--CSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 56788763 457888889999999999998875321 1122344556677888888999998876543 345667888
Q ss_pred HHcCC
Q 003054 136 NEIGL 140 (852)
Q Consensus 136 ~~~G~ 140 (852)
.+.|+
T Consensus 83 ~~~~i 87 (303)
T 3d02_A 83 RDAGI 87 (303)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88775
No 260
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=59.34 E-value=89 Score=32.06 Aligned_cols=82 Identities=12% Similarity=-0.012 Sum_probs=52.6
Q ss_pred ecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCCceEee-cc-cccccceEEEecCCCCchhhHHHHHHhcccc
Q 003054 607 VYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCSKYAMI-EP-KFKTAGFGFVFPLHSPLVHDVSKAILNVTEG 684 (852)
Q Consensus 607 ~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~~~~v-~~-~~~~~~~~~~~~k~spl~~~in~~il~l~e~ 684 (852)
.+.+..+..+.+.+|+ +++.+.....+..+....- .+..+ +. -......+++++++++-.+.--++|..+...
T Consensus 215 ~~~~~~~~~~~f~~G~----~a~~~~~~~~~~~~~~~~~-~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~ 289 (351)
T 4edp_A 215 TYSKSSDLANMFSNGE----IVAAVASDFAFGTISKAKP-EVINVIPESGTYLNFNTININKNSKNKDLAYEFINYALSK 289 (351)
T ss_dssp EECCHHHHHHHHHTTS----CSEEEEEHHHHHHHHHHCT-TCEEECCTTCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSH
T ss_pred ccCChHHHHHHHHcCC----EEEEecCcHHHHHHHhcCC-CeeeeCCCCCcccceeeEEEECCCCCHHHHHHHHHHhcCH
Confidence 4456778889999999 8888876655555554433 23333 21 1223345889999999888877888777655
Q ss_pred ChhHHHHHH
Q 003054 685 DKMKEIEDA 693 (852)
Q Consensus 685 G~~~~i~~k 693 (852)
.....+.+.
T Consensus 290 e~q~~~~~~ 298 (351)
T 4edp_A 290 EVQEKTAKA 298 (351)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444443
No 261
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=59.28 E-value=8.1 Score=41.64 Aligned_cols=68 Identities=15% Similarity=0.046 Sum_probs=53.3
Q ss_pred CCCcCCHHHHHhcCCeEEEEeCchHHHHHHh-------cCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHH
Q 003054 567 QPTITDVKMLIKRGDNVGYQKGSFVLGILKQ-------LGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKL 639 (852)
Q Consensus 567 ~~~i~sl~dL~~~~~~vg~~~~s~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~ 639 (852)
...|++++||. | ||++.+.....+... .+. ..+++.|++..+++.+|.+|+ ++|++.+..+...
T Consensus 25 ds~i~sl~DLk--g--vgv~~~~~~~~~~~~~~~i~~~~g~-~~~~~~y~~~~~a~~aL~nG~----vDAiv~~~~~~~~ 95 (398)
T 2xxp_A 25 DSEIENVTQLT--S--VTAPTGTDNENIQKLLADIKSSQNT-DLTVNQSSSYLAAYKSLIAGE----TKAIVLNSVFENI 95 (398)
T ss_dssp TCSCCSGGGCS--E--EEECTTTSHHHHHHHHHHHHHHSCC-CCEEEECSSHHHHHHHHHTTS----CSCEEEEHHHHHH
T ss_pred CCCcCCHHHhc--C--eeeECCCCHHHHHHHHHHHHHhhCC-cceEEecCCHHHHHHHHHcCC----CCEEEEchHHHHH
Confidence 36799999996 5 999988776655432 122 246889999999999999999 9999999888777
Q ss_pred HHhh
Q 003054 640 LIGQ 643 (852)
Q Consensus 640 ~~~~ 643 (852)
+...
T Consensus 96 le~~ 99 (398)
T 2xxp_A 96 IELE 99 (398)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6544
No 262
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=58.98 E-value=19 Score=36.14 Aligned_cols=78 Identities=9% Similarity=0.048 Sum_probs=59.2
Q ss_pred CcEEEEEEEe--CCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHH
Q 003054 58 WREAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKA 135 (852)
Q Consensus 58 w~~vaii~~d--~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a 135 (852)
-+.|+++..+ +.|.....+.+.+++++.|.++..... ..+.......+..+.+.++|.||+..... ...++.+
T Consensus 7 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~l 81 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDA---NADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQEI 81 (276)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEEC---TTCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHHH
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHHH
Confidence 4678888854 567788899999999999998865432 22345556778888889999999987665 6777888
Q ss_pred HHcCC
Q 003054 136 NEIGL 140 (852)
Q Consensus 136 ~~~G~ 140 (852)
.+.|+
T Consensus 82 ~~~~i 86 (276)
T 3jy6_A 82 LHQQM 86 (276)
T ss_dssp HTTSS
T ss_pred HHCCC
Confidence 88776
No 263
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=58.90 E-value=43 Score=26.97 Aligned_cols=101 Identities=12% Similarity=0.143 Sum_probs=56.3
Q ss_pred CCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHH
Q 003054 31 RSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYK 110 (852)
Q Consensus 31 ~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~ 110 (852)
.+-+-.|+..+....-+.|-+++++|+.+-|+++..|.+|.. ......+..|.+|.... +. .++......-..
T Consensus 24 kngfkvrtvrspqelkdsieelvkkynativvvvvddkewae----kairfvkslgaqvliii-yd--qdqnrleefsre 96 (134)
T 2l69_A 24 KNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAE----KAIRFVKSLGAQVLIII-YD--QDQNRLEEFSRE 96 (134)
T ss_dssp HTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHH----HHHHHHHHHCCCCEEEE-EC--SCHHHHHHHHHH
T ss_pred hcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHH----HHHHHHHhcCCeEEEEE-Ee--CchhHHHHHHHH
Confidence 345678888888888888888888888777666665555533 33334445566554332 22 223333333344
Q ss_pred hhcCCceEEEEEeChhhHHH-HHHHHHHcC
Q 003054 111 LFTMQTRVFILHMLPSLGSR-IFEKANEIG 139 (852)
Q Consensus 111 l~~~~~~viv~~~~~~~~~~-i~~~a~~~G 139 (852)
++..+..+--+ +++++... +-+-.++.|
T Consensus 97 vrrrgfevrtv-tspddfkkslerlirevg 125 (134)
T 2l69_A 97 VRRRGFEVRTV-TSPDDFKKSLERLIREVG 125 (134)
T ss_dssp HHHTTCCEEEE-SSHHHHHHHHHHHHHHHC
T ss_pred HHhcCceEEEe-cChHHHHHHHHHHHHHhc
Confidence 55555554433 45555433 333445555
No 264
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=57.15 E-value=20 Score=37.89 Aligned_cols=97 Identities=13% Similarity=0.033 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChh
Q 003054 47 GAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS 126 (852)
Q Consensus 47 ~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~ 126 (852)
..+.++++.+|.+++.+++....+| ..+.+.+.|++.+..+ ...+.++.+.+.+...+..+++.++|+||-.+.+.
T Consensus 25 ~~l~~~l~~~g~~r~liVtd~~~~~--~~~~v~~~L~~~~~~~--f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 100 (358)
T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQA--EAERIADLLGPLSAGV--YAGAVMHVPIESARDATARAREAGADCAVAVGGGS 100 (358)
T ss_dssp GGHHHHHHHTTCSCEEEECCGGGHH--HHHHHHHHHGGGEEEE--ECCCCTTCBHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred HHHHHHHHHhCCCeEEEEeCCcHHH--HHHHHHHHhccCCEEE--ecCCcCCCCHHHHHHHHHHhhccCCCEEEEeCCcH
Confidence 4567788899999999998554443 4677888888765433 22334445567788888888889999998887654
Q ss_pred --hHHHHHHHHHHcCCcccceEEEEcCc
Q 003054 127 --LGSRIFEKANEIGLMNKGCVWIMTDG 152 (852)
Q Consensus 127 --~~~~i~~~a~~~G~~~~~~vwi~~~~ 152 (852)
|+.+++... .|+ .++-|-|..
T Consensus 101 viD~aK~iA~~--~~~---p~i~IPTT~ 123 (358)
T 3jzd_A 101 TTGLGKAIALE--TGM---PIVAIPTTY 123 (358)
T ss_dssp HHHHHHHHHHH--HCC---CEEEEECSS
T ss_pred HHHHHHHHHhc--cCC---CEEEEeCCc
Confidence 566666542 333 345555543
No 265
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=56.94 E-value=39 Score=33.48 Aligned_cols=94 Identities=10% Similarity=-0.004 Sum_probs=67.1
Q ss_pred HHHHHHHHHHcCCcEEEEEEEe--CCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEe
Q 003054 46 AGAITAIIKAFGWREAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHM 123 (852)
Q Consensus 46 ~~aia~~l~~~gw~~vaii~~d--~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~ 123 (852)
.....+.+++.|.+.|=+.... .++.....+.+++.+++.|+++........ .....+...+...+..+++.|+++.
T Consensus 32 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~~~~~~~i~~A~~lGa~~v~~~p 110 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM-KSEEEIDRAFDYAKRVGVKLIVGVP 110 (257)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE-CSHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc-CCHHHHHHHHHHHHHhCCCEEEecC
Confidence 4566777888999888765421 122334567899999999999876554322 3456777788888888888888876
Q ss_pred ChhhHHHHHHHHHHcCC
Q 003054 124 LPSLGSRIFEKANEIGL 140 (852)
Q Consensus 124 ~~~~~~~i~~~a~~~G~ 140 (852)
..+....+.+.|++.|+
T Consensus 111 ~~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 111 NYELLPYVDKKVKEYDF 127 (257)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 66667778888887776
No 266
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=56.84 E-value=26 Score=37.03 Aligned_cols=84 Identities=11% Similarity=0.001 Sum_probs=59.2
Q ss_pred HHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChh
Q 003054 47 GAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS 126 (852)
Q Consensus 47 ~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~ 126 (852)
..+.++++.+|.+|+.+++..... +..+.+.+.|++.+..+ ...+.++.+.+.+...+..+++.++|+||-.+-+.
T Consensus 23 ~~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v--~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 98 (353)
T 3hl0_A 23 ADVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGV--FSEAAMHTPVEVTKTAVEAYRAAGADCVVSLGGGS 98 (353)
T ss_dssp GGHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEE--ECCCCTTCBHHHHHHHHHHHHHTTCSEEEEEESHH
T ss_pred HHHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEE--ecCcCCCCcHHHHHHHHHHHhccCCCEEEEeCCcH
Confidence 346778888999999998855443 35677888888766543 22334445567788888888999999998887654
Q ss_pred --hHHHHHHH
Q 003054 127 --LGSRIFEK 134 (852)
Q Consensus 127 --~~~~i~~~ 134 (852)
|+.+++..
T Consensus 99 ~iD~aK~iA~ 108 (353)
T 3hl0_A 99 TTGLGKAIAL 108 (353)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 56666544
No 267
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=56.29 E-value=22 Score=36.19 Aligned_cols=78 Identities=14% Similarity=0.094 Sum_probs=59.0
Q ss_pred cEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh-hhHHHHHHHH
Q 003054 59 REAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-SLGSRIFEKA 135 (852)
Q Consensus 59 ~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~-~~~~~i~~~a 135 (852)
.+|+++.. +++|.....+.+.+++++.|.++..... .+.......+..+.+.++|.||+.... ......++++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~ 78 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV----PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKA 78 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC----CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHH
Confidence 36788874 3568888999999999999998864432 235566778888888899999988654 4456678888
Q ss_pred HHcCC
Q 003054 136 NEIGL 140 (852)
Q Consensus 136 ~~~G~ 140 (852)
++.|+
T Consensus 79 ~~~~i 83 (306)
T 8abp_A 79 RGYDM 83 (306)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88886
No 268
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=55.86 E-value=42 Score=33.28 Aligned_cols=94 Identities=6% Similarity=-0.064 Sum_probs=68.9
Q ss_pred HHHHHHHHHHcCCcEEEEEEEe------------CCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhc
Q 003054 46 AGAITAIIKAFGWREAVPIYVD------------NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT 113 (852)
Q Consensus 46 ~~aia~~l~~~gw~~vaii~~d------------~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~ 113 (852)
.....+.+++.|.+.|=+...+ ........+.+++.+++.|+++....... +...+++...+...+.
T Consensus 24 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~-~~~~~~~~~~i~~A~~ 102 (262)
T 3p6l_A 24 LTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYV-AEKSSDWEKMFKFAKA 102 (262)
T ss_dssp HHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEEC-CSSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccC-CccHHHHHHHHHHHHH
Confidence 4556677788999988776422 11223357889999999999988776543 2345678888888888
Q ss_pred CCceEEEEEeChhhHHHHHHHHHHcCC
Q 003054 114 MQTRVFILHMLPSLGSRIFEKANEIGL 140 (852)
Q Consensus 114 ~~~~viv~~~~~~~~~~i~~~a~~~G~ 140 (852)
.+++.|+++...+....+...|++.|+
T Consensus 103 lGa~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 103 MDLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp TTCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred cCCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 999999988766666777788887776
No 269
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=54.58 E-value=18 Score=36.72 Aligned_cols=81 Identities=7% Similarity=0.052 Sum_probs=58.9
Q ss_pred cEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh-hhHHHHHHHH
Q 003054 59 REAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-SLGSRIFEKA 135 (852)
Q Consensus 59 ~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~-~~~~~i~~~a 135 (852)
.+|+++.. +++|.....+.+.+++++.|.++.....-.. .+.......+..+.+.++|.||+.... ......++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGA-NDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRA 82 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSS-CCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCc-CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 46777774 3678888999999999999998865432110 134556677888888999999887544 3346678888
Q ss_pred HHcCC
Q 003054 136 NEIGL 140 (852)
Q Consensus 136 ~~~G~ 140 (852)
++.|+
T Consensus 83 ~~~gi 87 (297)
T 3rot_A 83 NKLNI 87 (297)
T ss_dssp HHHTC
T ss_pred HHCCC
Confidence 88886
No 270
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=54.24 E-value=75 Score=30.61 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=27.4
Q ss_pred HHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEeee
Q 003054 380 VDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDI 431 (852)
Q Consensus 380 ~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~~ 431 (852)
-++++.+.++.|.++++.+ ++-..++.++. +.+|+++.+-
T Consensus 16 ~~~~~~F~~~~gi~V~~~~-----------~~s~~l~~~l~-~~~Dv~~~~~ 55 (237)
T 2hxw_A 16 KDIANKYSEKTGVKVNVNF-----------GPQATWFEKAK-KDADILFGAS 55 (237)
T ss_dssp HHHHHHHHHHHCCCEEEEE-----------SSHHHHHHHHH-HHCSEEEESS
T ss_pred HHHHHHHHHHhCceEEEEe-----------CChHHHHHHhc-cCCCEEEeCC
Confidence 3677777777776554432 24567888888 8999987654
No 271
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=53.86 E-value=38 Score=31.42 Aligned_cols=67 Identities=9% Similarity=0.069 Sum_probs=49.7
Q ss_pred cCCcEEEEEEEeCCccc---ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhc-CCceEEEEEeC
Q 003054 56 FGWREAVPIYVDNQYGE---EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFILHML 124 (852)
Q Consensus 56 ~gw~~vaii~~d~~~G~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~viv~~~~ 124 (852)
+.--+|+||...|+-|+ .....+.+.|++.|.++.....++. +.+++...|.+..+ .+.|+||+.+-
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~D--d~~~i~~~l~~~~~~~~~DlVittGG 81 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKD--DKESIQQAVLAGYHKEDVDVVLTNGG 81 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECS--SHHHHHHHHHHHHTCTTCSEEEEECC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 34468999997776652 3356788889999999988877763 36778888888765 37899998864
No 272
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=53.82 E-value=25 Score=38.58 Aligned_cols=97 Identities=15% Similarity=0.054 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh-
Q 003054 47 GAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP- 125 (852)
Q Consensus 47 ~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~- 125 (852)
..+.++++.+|.+++.||+....+. ...+.+.+.|++.|+++.. ..+..+...+.+...+..+++ ++|+||-.+.+
T Consensus 80 ~~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~~-~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGS 156 (450)
T 1ta9_A 80 TRSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVTK-LVFGGEASLVELDKLRKQCPD-DTQVIIGVGGGK 156 (450)
T ss_dssp GGHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEEE-EEECSCCCHHHHHHHHTTSCT-TCCEEEEEESHH
T ss_pred HHHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEEE-EeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcH
Confidence 3456677778866999988554443 4678888999999988743 234434445567777777777 99999977654
Q ss_pred -hhHHHHHHHHHHcCCcccceEEEEcC
Q 003054 126 -SLGSRIFEKANEIGLMNKGCVWIMTD 151 (852)
Q Consensus 126 -~~~~~i~~~a~~~G~~~~~~vwi~~~ 151 (852)
-|+.+++.. ..|+ .++-|-|.
T Consensus 157 viD~AK~iA~--~~gi---P~I~IPTT 178 (450)
T 1ta9_A 157 TMDSAKYIAH--SMNL---PSIICPTT 178 (450)
T ss_dssp HHHHHHHHHH--HTTC---CEEEEESS
T ss_pred HHHHHHHHHH--hcCC---CEEEEeCC
Confidence 466666653 2343 34555554
No 273
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=53.66 E-value=24 Score=35.48 Aligned_cols=79 Identities=6% Similarity=0.046 Sum_probs=56.1
Q ss_pred cEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChh-hHHHHHHHH
Q 003054 59 REAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS-LGSRIFEKA 135 (852)
Q Consensus 59 ~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~-~~~~i~~~a 135 (852)
++|+++.. ++.|.....+.+.+++++.|.++..... ..+.......+..+.+.++|.||+..... .....++++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~ 79 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS---QNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRA 79 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 47888874 4678888999999999999998764321 22344455667787788999998876433 334567777
Q ss_pred HHcCC
Q 003054 136 NEIGL 140 (852)
Q Consensus 136 ~~~G~ 140 (852)
.+.|+
T Consensus 80 ~~~~i 84 (290)
T 2fn9_A 80 KEAGI 84 (290)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77775
No 274
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=53.66 E-value=1.9e+02 Score=29.08 Aligned_cols=68 Identities=9% Similarity=0.095 Sum_probs=41.6
Q ss_pred HHHHHHHHHC-CCccceEEEecCCCCCCCCCChhHHHHHHhc-Cc-ccEEEeeeeeec---CcceeeeccccccccceEE
Q 003054 381 DVFKAVIQEL-PYAVAYDFVPYGQPDGSSSGSYNDLVYQVFL-GE-FDAVVGDITIVF---NRSNYVDFTLPYTESGVSM 454 (852)
Q Consensus 381 dl~~~ia~~l-~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~-g~-~D~~~g~~~it~---~r~~~vdft~p~~~~~~~~ 454 (852)
++++.+.++. |.++++.+ ++-..++.++.+ |. +|+.+..-.... .....++...||....+++
T Consensus 21 ~l~~~F~~~~~gi~V~~~~-----------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~l~i 89 (296)
T 3cfx_A 21 ELEAEFEAQHPGVDVQREA-----------AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMIL 89 (296)
T ss_dssp HHHHHHHHHSTTCEEEEEE-----------CCHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEE
T ss_pred HHHHHHHHHCCCceEEEEe-----------CchHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeeeEeeeEEE
Confidence 6777777774 75444432 245678888888 75 999875321101 1112234556777888888
Q ss_pred EEEcc
Q 003054 455 IVPIK 459 (852)
Q Consensus 455 vv~~~ 459 (852)
+++..
T Consensus 90 ~~~~~ 94 (296)
T 3cfx_A 90 AYTNE 94 (296)
T ss_dssp EECTT
T ss_pred EEeCC
Confidence 88865
No 275
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=53.45 E-value=27 Score=36.24 Aligned_cols=80 Identities=11% Similarity=0.012 Sum_probs=56.4
Q ss_pred CCcEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHH
Q 003054 57 GWREAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEK 134 (852)
Q Consensus 57 gw~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~ 134 (852)
.-+.|+++.. ++.|-....+.+.+++++.|.++..... +.+.......+..+.+.++|.||+....... ..++.
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~~~~ 136 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNS---HYDAGQELQLLRAYLQHRPDGVLITGLSHAE-PFERI 136 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHTTCCSEEEEECSCCCT-THHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHcCCCCEEEEeCCCCCH-HHHHH
Confidence 3467888874 4567888999999999999998764321 2234556677888888999999987644322 45666
Q ss_pred HHHcCC
Q 003054 135 ANEIGL 140 (852)
Q Consensus 135 a~~~G~ 140 (852)
+.+.|+
T Consensus 137 l~~~~i 142 (339)
T 3h5o_A 137 LSQHAL 142 (339)
T ss_dssp HHHTTC
T ss_pred HhcCCC
Confidence 777775
No 276
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=53.36 E-value=24 Score=35.84 Aligned_cols=101 Identities=13% Similarity=0.055 Sum_probs=62.5
Q ss_pred cCCHHHHHhcCCeEEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCCceE
Q 003054 570 ITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCSKYA 649 (852)
Q Consensus 570 i~sl~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~~~ 649 (852)
+++++||. .+++|+..--...+.||.+.+.+-.-+..+.+.|- +-..|- .|++++-.....-+.++ ++.
T Consensus 106 ~~~~~~l~-~~~RIATkyp~l~~~yf~~~gi~~~ii~l~GsvE~---ap~~Gl----ADaIvDivsTG~TLraN---gL~ 174 (289)
T 2vd3_A 106 IRGPEDIP-RGAVIATEFPGITENYLREHGIDAEVVELTGSTEI---APFIGV----ADLITDLSSTGTTLRMN---HLR 174 (289)
T ss_dssp CCSGGGCC-TTCEEEESCHHHHHHHHHHTTCCCEEEECSSCGGG---TTTTTS----CSEEEEEESSTHHHHHT---TEE
T ss_pred CCCHHHhc-CCCEEEeCcHHHHHHHHHHcCCcEEEEECCCceee---ccCCCc----ccEEEEEeCChHHHHHC---CCE
Confidence 66788882 27899987777889999988886544556666663 244566 78888766555554444 355
Q ss_pred eecccccccceEEEecCCC-Cc-hhhHHHHHHhcc
Q 003054 650 MIEPKFKTAGFGFVFPLHS-PL-VHDVSKAILNVT 682 (852)
Q Consensus 650 ~v~~~~~~~~~~~~~~k~s-pl-~~~in~~il~l~ 682 (852)
.++..+ ...-.++.++.+ +. .+.+++.+.++.
T Consensus 175 ~ie~I~-~ssA~LI~n~~s~~~k~~~i~~l~~rl~ 208 (289)
T 2vd3_A 175 VIDTIL-ESSVKLIANRESYATKSGIIEELRTGIR 208 (289)
T ss_dssp EEEEEE-EECEEEEECHHHHHHSHHHHHHHHHHHH
T ss_pred EeEEEE-eeEEEEEEccchhhhHHHHHHHHHHHHH
Confidence 664444 445556666665 22 234555555553
No 277
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=53.02 E-value=38 Score=34.00 Aligned_cols=80 Identities=4% Similarity=-0.023 Sum_probs=54.0
Q ss_pred CCcEEEEEEEe----CCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHH
Q 003054 57 GWREAVPIYVD----NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIF 132 (852)
Q Consensus 57 gw~~vaii~~d----~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~ 132 (852)
.-++|+++..+ ++|.....+.+.+++++.|.++.... ...+.......+..+.+.++|.||+....... ..+
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-~~~ 93 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD---GKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV-DEI 93 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEEC---CTTSHHHHHHHHHHHHHTTCSEEEEECSSSCH-HHH
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEe---CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCh-HHH
Confidence 44688988854 56888889999999999999875432 22234445667778888899999887653222 345
Q ss_pred HHHHH-cCC
Q 003054 133 EKANE-IGL 140 (852)
Q Consensus 133 ~~a~~-~G~ 140 (852)
+.+.+ .|.
T Consensus 94 ~~l~~~~~i 102 (296)
T 3brq_A 94 DDIIDAHSQ 102 (296)
T ss_dssp HHHHHTCSS
T ss_pred HHHHhcCCC
Confidence 66666 675
No 278
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=53.00 E-value=52 Score=32.70 Aligned_cols=87 Identities=9% Similarity=0.080 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeC
Q 003054 45 QAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 124 (852)
Q Consensus 45 ~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~ 124 (852)
....+|...... ..-+.++. |..|-.+..+.+...-+..++.|..+..+- +.+ ++..++..++|+|.+.+.
T Consensus 62 ~~~~iA~~y~~~-A~~IsVlT-d~~~F~gs~~dL~~ir~~v~lPvLrKDfi~-----~~~--qi~ea~~~GAD~ilLi~a 132 (251)
T 1i4n_A 62 SLEDFIRMYDEL-ADAISILT-EKHYFKGDPAFVRAARNLTCRPILAKDFYI-----DTV--QVKLASSVGADAILIIAR 132 (251)
T ss_dssp CHHHHHHHHHHH-CSEEEEEC-CCSSSCCCTHHHHHHHTTCCSCEEEECCCC-----STH--HHHHHHHTTCSEEEEEGG
T ss_pred CHHHHHHHHHHh-CCceEEEe-cccccCCCHHHHHHHHHhCCCCEEEeeCCC-----CHH--HHHHHHHcCCCEEEEecc
Confidence 344555554444 56666665 777777888888887777788877555331 123 577789999999988866
Q ss_pred h---hhHHHHHHHHHHcCC
Q 003054 125 P---SLGSRIFEKANEIGL 140 (852)
Q Consensus 125 ~---~~~~~i~~~a~~~G~ 140 (852)
. .+...+++.|+++||
T Consensus 133 ~l~~~~l~~l~~~a~~lGl 151 (251)
T 1i4n_A 133 ILTAEQIKEIYEAAEELGM 151 (251)
T ss_dssp GSCHHHHHHHHHHHHTTTC
T ss_pred cCCHHHHHHHHHHHHHcCC
Confidence 4 567899999999998
No 279
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=52.15 E-value=21 Score=37.33 Aligned_cols=60 Identities=17% Similarity=0.101 Sum_probs=50.2
Q ss_pred ccccchhHHHHHHHhhhcc-cc-c--cccchhhHHHHHHHHHHHHHHHHhhhhccceeeecccC
Q 003054 508 GQQVGTSFWFSFSTMVFSQ-RE-R--VISNLARIVVIVWCFVVLILTQSYTASLTSLLTVQQLQ 567 (852)
Q Consensus 508 ~~~~~~~~~~~~~~l~~~~-~~-~--~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 567 (852)
..++..+|||++.++...| +. . +.+..+++++.+-.+.++++.+.-++-+.+-++.+...
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 3578899999999999877 33 2 35788999999999999999999999999888776544
No 280
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=52.03 E-value=84 Score=28.73 Aligned_cols=85 Identities=16% Similarity=0.097 Sum_probs=55.7
Q ss_pred cEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh----hhHHHHHHH
Q 003054 59 REAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP----SLGSRIFEK 134 (852)
Q Consensus 59 ~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~----~~~~~i~~~ 134 (852)
.+|.+.....+.=.-....+...|+..|.+|.+--.. .+. ...+..+++.+||+|.+.+.. +....++++
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~---~p~---e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~ 92 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLR---QTP---EQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAK 92 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSB---CCH---HHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCC---CCH---HHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHH
Confidence 4666655555544445666777899999998754321 123 345566777899999998763 456888888
Q ss_pred HHHcCCcccceEEEEc
Q 003054 135 ANEIGLMNKGCVWIMT 150 (852)
Q Consensus 135 a~~~G~~~~~~vwi~~ 150 (852)
+++.|.. .-.+|+++
T Consensus 93 L~~~g~~-~i~v~vGG 107 (161)
T 2yxb_A 93 LRELGAD-DIPVVLGG 107 (161)
T ss_dssp HHHTTCT-TSCEEEEE
T ss_pred HHhcCCC-CCEEEEeC
Confidence 9888862 23356654
No 281
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=51.65 E-value=32 Score=32.51 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=48.6
Q ss_pred CCcEEEEEEEeCCc--c--cccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeC
Q 003054 57 GWREAVPIYVDNQY--G--EEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 124 (852)
Q Consensus 57 gw~~vaii~~d~~~--G--~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~ 124 (852)
.--+|+||...|+- | ......+.+.+++.|.++.....++. +.+++...|.+....+.|+|+..+-
T Consensus 29 ~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~D--d~~~I~~al~~a~~~~~DlVIttGG 98 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVEA--DEVDIRNALNTAVIGGVDLVVSVGG 98 (185)
T ss_dssp CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEECS--CHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred CCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhCCCCEEEECCC
Confidence 34578888865542 3 34567788899999999988877763 3677888888776567899998854
No 282
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=51.56 E-value=42 Score=31.43 Aligned_cols=67 Identities=13% Similarity=0.052 Sum_probs=48.7
Q ss_pred cCCcEEEEEEEeCC-c------c---cccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcC-CceEEEEEeC
Q 003054 56 FGWREAVPIYVDNQ-Y------G---EEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM-QTRVFILHML 124 (852)
Q Consensus 56 ~gw~~vaii~~d~~-~------G---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~-~~~viv~~~~ 124 (852)
+.--+|+||...|+ + | ......+.+.+++.|.++.....++. +.+++...|.+..+. ++|+||+.+-
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~D--d~~~I~~al~~a~~~~~~DlVittGG 90 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPD--DKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 44568999986552 1 3 34556788899999999988777763 367788888887654 5899998864
No 283
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=50.75 E-value=23 Score=35.73 Aligned_cols=80 Identities=11% Similarity=0.035 Sum_probs=56.7
Q ss_pred CCcEEEEEEEe-------CCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHH
Q 003054 57 GWREAVPIYVD-------NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGS 129 (852)
Q Consensus 57 gw~~vaii~~d-------~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~ 129 (852)
.-++|+++..+ +.|.....+.+.+++++.|.++... ....+.......+..+.+.++|.||+...... .
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~-~ 82 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMS---TGETEEEIFNGVVKMVQGRQIGGIILLYSREN-D 82 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEEC---CCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT-C
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEE---eCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-h
Confidence 44678888865 5677888999999999999887543 22222344566777788889999998754432 2
Q ss_pred HHHHHHHHcCC
Q 003054 130 RIFEKANEIGL 140 (852)
Q Consensus 130 ~i~~~a~~~G~ 140 (852)
..++.+.+.|+
T Consensus 83 ~~~~~l~~~~i 93 (292)
T 3k4h_A 83 RIIQYLHEQNF 93 (292)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 56777778776
No 284
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=50.72 E-value=33 Score=32.78 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=73.0
Q ss_pred cEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeec
Q 003054 16 PILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVI 95 (852)
Q Consensus 16 P~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~ 95 (852)
.+||=++|...|.+.-.-=+.-+..+.....+++...-++ + ++++++...+.. ...+.+.+.| |.++.....
T Consensus 54 VIISRGgta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~-~-~kIavvg~~~~~--~~~~~~~~ll---~~~i~~~~~- 125 (196)
T 2q5c_A 54 AIISRGATSDYIKKSVSIPSISIKVTRFDTMRAVYNAKRF-G-NELALIAYKHSI--VDKHEIEAML---GVKIKEFLF- 125 (196)
T ss_dssp EEEEEHHHHHHHHTTCSSCEEEECCCHHHHHHHHHHHGGG-C-SEEEEEEESSCS--SCHHHHHHHH---TCEEEEEEE-
T ss_pred EEEECChHHHHHHHhCCCCEEEEcCCHhHHHHHHHHHHhh-C-CcEEEEeCcchh--hHHHHHHHHh---CCceEEEEe-
Confidence 5788888777776532233666777877777887777554 4 589999855432 2345555555 566654432
Q ss_pred CCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCc
Q 003054 96 SPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLM 141 (852)
Q Consensus 96 ~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~ 141 (852)
.+.++....+.++++.+.++||-.+ ...+.|+++||.
T Consensus 126 ---~~~~e~~~~i~~l~~~G~~vvVG~~------~~~~~A~~~Gl~ 162 (196)
T 2q5c_A 126 ---SSEDEITTLISKVKTENIKIVVSGK------TVTDEAIKQGLY 162 (196)
T ss_dssp ---CSGGGHHHHHHHHHHTTCCEEEECH------HHHHHHHHTTCE
T ss_pred ---CCHHHHHHHHHHHHHCCCeEEECCH------HHHHHHHHcCCc
Confidence 2366789999999999999987533 346778899983
No 285
>3tqw_A Methionine-binding protein; transport and binding proteins, transport protein; HET: MSE; 2.00A {Coxiella burnetii}
Probab=50.70 E-value=79 Score=31.11 Aligned_cols=30 Identities=17% Similarity=0.250 Sum_probs=24.5
Q ss_pred HCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEE
Q 003054 389 ELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVV 428 (852)
Q Consensus 389 ~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~ 428 (852)
+.|+ +++++.|. +|.....+|.+|++|+..
T Consensus 28 ~~Gi--~veiv~F~--------Dy~~pN~AL~~G~iDaN~ 57 (240)
T 3tqw_A 28 RYGL--HVNIITFS--------DYNTPNEALADGSVDANM 57 (240)
T ss_dssp HHCC--CEEEEEES--------CTTSHHHHHHTTSCSEEE
T ss_pred hcCC--eEEEEEeC--------ChHhHHHHHHcCCcCeec
Confidence 5685 66777776 688999999999999964
No 286
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=50.43 E-value=21 Score=36.39 Aligned_cols=86 Identities=12% Similarity=0.014 Sum_probs=56.7
Q ss_pred HHHHHcCCcEEEEEEEe-------CCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEe
Q 003054 51 AIIKAFGWREAVPIYVD-------NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHM 123 (852)
Q Consensus 51 ~~l~~~gw~~vaii~~d-------~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~ 123 (852)
+-++.-.-+.|+++..+ +.|.....+.+.+++++.|.++... ....+.......+..+.+.++|.||+..
T Consensus 15 r~L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 91 (305)
T 3huu_A 15 RTLITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMT---VSENSGDLYHEVKTMIQSKSVDGFILLY 91 (305)
T ss_dssp ------CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEEC---CCSSHHHHHHHHHHHHHTTCCSEEEESS
T ss_pred HHhhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEE---eCCCChHHHHHHHHHHHhCCCCEEEEeC
Confidence 33444445789998865 5677888999999999999887643 2222233445677788889999999876
Q ss_pred ChhhHHHHHHHHHHcCC
Q 003054 124 LPSLGSRIFEKANEIGL 140 (852)
Q Consensus 124 ~~~~~~~i~~~a~~~G~ 140 (852)
.... ...++.+.+.|+
T Consensus 92 ~~~~-~~~~~~l~~~~i 107 (305)
T 3huu_A 92 SLKD-DPIEHLLNEFKV 107 (305)
T ss_dssp CBTT-CHHHHHHHHTTC
T ss_pred CcCC-cHHHHHHHHcCC
Confidence 4432 256677777776
No 287
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=50.38 E-value=23 Score=38.24 Aligned_cols=83 Identities=12% Similarity=0.095 Sum_probs=56.5
Q ss_pred HHHHHHHcCCcEEEEEEEeCCccc-ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh--
Q 003054 49 ITAIIKAFGWREAVPIYVDNQYGE-EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-- 125 (852)
Q Consensus 49 ia~~l~~~gw~~vaii~~d~~~G~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~-- 125 (852)
+.++++ +| +++.+|+.+..... +..+.+.+.|+ |+++.......++.+.+.+...+..+++.++|+||-.+-+
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 118 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSV 118 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEESHHH
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchH
Confidence 455566 78 89988884443332 35677777776 7765444444455667788888888999999999977654
Q ss_pred hhHHHHHHHH
Q 003054 126 SLGSRIFEKA 135 (852)
Q Consensus 126 ~~~~~i~~~a 135 (852)
-|+.+++...
T Consensus 119 iD~AK~iA~~ 128 (408)
T 1oj7_A 119 LDGTKFIAAA 128 (408)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4666666554
No 288
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=49.98 E-value=1.3e+02 Score=30.24 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=40.9
Q ss_pred HHHHHHHHHC-CCccceEEEecCCCCCCCCCChhHHHHHHhc-Cc-ccEEEeeeeeec---CcceeeeccccccccceEE
Q 003054 381 DVFKAVIQEL-PYAVAYDFVPYGQPDGSSSGSYNDLVYQVFL-GE-FDAVVGDITIVF---NRSNYVDFTLPYTESGVSM 454 (852)
Q Consensus 381 dl~~~ia~~l-~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~-g~-~D~~~g~~~it~---~r~~~vdft~p~~~~~~~~ 454 (852)
++++.+.++. |.++++ .. ++-..++.++.+ |. +|+.+..-.... .....++...||....+++
T Consensus 21 ~l~~~F~~~~~gi~V~~--~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvi 89 (292)
T 3cfz_A 21 EYEKMFEKEHPNVDVER--EP---------AGSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFARNEIVL 89 (292)
T ss_dssp HHHHHHHHHCTTEEEEE--EE---------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCEEE
T ss_pred HHHHHHHHHCCCceEEE--Ee---------CCHHHHHHHHHhcCCCCcEEEECChHHHHHHHhCCCccceeeeEeccEEE
Confidence 6777777774 654443 32 234678889888 75 999875321111 1112234556777888888
Q ss_pred EEEcc
Q 003054 455 IVPIK 459 (852)
Q Consensus 455 vv~~~ 459 (852)
++++.
T Consensus 90 ~~~~~ 94 (292)
T 3cfz_A 90 AYTDK 94 (292)
T ss_dssp EECTT
T ss_pred EEcCC
Confidence 88865
No 289
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=49.84 E-value=77 Score=29.07 Aligned_cols=92 Identities=10% Similarity=-0.006 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecC--C--CCChHHHH--HHHHHhhcCCceEEE
Q 003054 47 GAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVIS--P--LATDDQIE--KELYKLFTMQTRVFI 120 (852)
Q Consensus 47 ~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~--~--~~~~~d~~--~~l~~l~~~~~~viv 120 (852)
..+.+.+...|--..+..| .+..+....+.+.++|.+.|.++....... . .-+..|.. --+..+ +...|.++
T Consensus 36 ~~l~~~~~~~g~l~~~~~Y-~~~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~-a~~~d~~v 113 (165)
T 2qip_A 36 NQFWYVATQEKEVVSAKAY-AIASNDPKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEI-APDVDRVI 113 (165)
T ss_dssp HHHHHHHTTTEEEEEEEEE-ECCCCCHHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHH-GGGCSEEE
T ss_pred HHHHHHHhcCCEEEEEEEE-EccCCchhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHh-hccCCEEE
Confidence 3444555444433333444 222233456778899999999886442211 1 11233433 222333 25679999
Q ss_pred EEeChhhHHHHHHHHHHc-CC
Q 003054 121 LHMLPSLGSRIFEKANEI-GL 140 (852)
Q Consensus 121 ~~~~~~~~~~i~~~a~~~-G~ 140 (852)
+.+...+...+++.+++. |.
T Consensus 114 LvSgD~DF~plv~~lr~~~G~ 134 (165)
T 2qip_A 114 LVSGDGDFSLLVERIQQRYNK 134 (165)
T ss_dssp EECCCGGGHHHHHHHHHHHCC
T ss_pred EEECChhHHHHHHHHHHHcCc
Confidence 888888999999999995 85
No 290
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=49.83 E-value=34 Score=35.79 Aligned_cols=80 Identities=10% Similarity=0.020 Sum_probs=55.9
Q ss_pred CCcEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHH
Q 003054 57 GWREAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEK 134 (852)
Q Consensus 57 gw~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~ 134 (852)
.-+.|+++.. ++.|-....+.+.+++++.|..+..... +.+.......+..+.+.++|.||+...... ...++.
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~~~~~~ 144 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYT---AYSPEREEQLVETMLRRRPEAMVLSYDGHT-EQTIRL 144 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTCCSEEEEECSCCC-HHHHHH
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHHHH
Confidence 3457888874 4567778899999999999998865422 123445566777888889999998765433 255677
Q ss_pred HHHcCC
Q 003054 135 ANEIGL 140 (852)
Q Consensus 135 a~~~G~ 140 (852)
+.+.|+
T Consensus 145 l~~~~i 150 (355)
T 3e3m_A 145 LQRASI 150 (355)
T ss_dssp HHHCCS
T ss_pred HHhCCC
Confidence 777776
No 291
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=48.53 E-value=75 Score=30.41 Aligned_cols=88 Identities=13% Similarity=-0.076 Sum_probs=57.3
Q ss_pred cEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh----hhHHHHHHH
Q 003054 59 REAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP----SLGSRIFEK 134 (852)
Q Consensus 59 ~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~----~~~~~i~~~ 134 (852)
.+|.+.....+.-.-....+...|+..|.+|.+--. +... ...+..+++.+||+|.+.+.. +....++++
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~---~vp~---~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~ 162 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGV---DIEP---GKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDA 162 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCS---SBCH---HHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCC---CCCH---HHHHHHHHHcCCCEEEEeccccccHHHHHHHHHH
Confidence 466666655554444566777789999999865321 1223 344556666799999998753 356888889
Q ss_pred HHHcCCcccceEEEEcCc
Q 003054 135 ANEIGLMNKGCVWIMTDG 152 (852)
Q Consensus 135 a~~~G~~~~~~vwi~~~~ 152 (852)
+++.|....-.+++++..
T Consensus 163 l~~~~~~~~~~v~vGG~~ 180 (210)
T 1y80_A 163 LIAAGLRDRVKVIVGGAP 180 (210)
T ss_dssp HHHTTCGGGCEEEEESTT
T ss_pred HHhcCCCCCCeEEEECCC
Confidence 998887544445665443
No 292
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=48.08 E-value=34 Score=34.69 Aligned_cols=79 Identities=8% Similarity=0.145 Sum_probs=55.7
Q ss_pred cEEEEEEE--eCCcccccHHHHHHHHHhCCc-eeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChh-hHHHHHHH
Q 003054 59 REAVPIYV--DNQYGEEMIPSLTDALQAIDT-RVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS-LGSRIFEK 134 (852)
Q Consensus 59 ~~vaii~~--d~~~G~~~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~-~~~~i~~~ 134 (852)
++|+++.. ++.|.....+.+.+++++.|. ++..... ..+.......+..+.+.++|.||+..... .....+++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~ 79 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS---QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK 79 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHH
Confidence 46788874 456778889999999999997 7754321 12344455677778888999999876543 34567788
Q ss_pred HHHcCC
Q 003054 135 ANEIGL 140 (852)
Q Consensus 135 a~~~G~ 140 (852)
+.+.|+
T Consensus 80 ~~~~~i 85 (309)
T 2fvy_A 80 ARGQNV 85 (309)
T ss_dssp HHTTTC
T ss_pred HHHCCC
Confidence 887775
No 293
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=48.03 E-value=33 Score=34.91 Aligned_cols=87 Identities=11% Similarity=0.028 Sum_probs=55.2
Q ss_pred HHHHHHcCCcEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhh
Q 003054 50 TAIIKAFGWREAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSL 127 (852)
Q Consensus 50 a~~l~~~gw~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~ 127 (852)
|+-++.-.-+.|+++.. ++.|.....+.+.+++++.|.++..... ..+.......+..+.+.++|.||+......
T Consensus 7 Ar~L~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 83 (303)
T 3kke_A 7 ARALRHSRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQI---DAPPRGTQQLSRLVSEGRVDGVLLQRREDF 83 (303)
T ss_dssp ----------CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEEC---CSTTHHHHHHHHHHHSCSSSEEEECCCTTC
T ss_pred HHHHhhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 33343334467888884 4567888999999999999998765432 123445567788888899999998865443
Q ss_pred HHHHHHHHHHcCC
Q 003054 128 GSRIFEKANEIGL 140 (852)
Q Consensus 128 ~~~i~~~a~~~G~ 140 (852)
....++.+.+ |+
T Consensus 84 ~~~~~~~l~~-~i 95 (303)
T 3kke_A 84 DDDMLAAVLE-GV 95 (303)
T ss_dssp CHHHHHHHHT-TS
T ss_pred cHHHHHHHhC-CC
Confidence 2226666666 75
No 294
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=47.97 E-value=38 Score=35.09 Aligned_cols=82 Identities=13% Similarity=0.136 Sum_probs=54.7
Q ss_pred cEEEEEEEe---CCcccccHHHHHHHHHhCCceeeeeeecCC-CCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHH
Q 003054 59 REAVPIYVD---NQYGEEMIPSLTDALQAIDTRVPYRSVISP-LATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEK 134 (852)
Q Consensus 59 ~~vaii~~d---~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~-~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~ 134 (852)
++|+++..+ ++|-....+.+.+++++.|.++.....-.. ..+.......+..+.+.++|.||+..........+++
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 123 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEH 123 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHHH
Confidence 478888754 577788899999999999987654321111 0123445567778888899999984433333456677
Q ss_pred HHHcCC
Q 003054 135 ANEIGL 140 (852)
Q Consensus 135 a~~~G~ 140 (852)
+.+.|.
T Consensus 124 ~~~~~i 129 (342)
T 1jx6_A 124 VLDSTN 129 (342)
T ss_dssp HHHHCS
T ss_pred HHHcCC
Confidence 777775
No 295
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=47.80 E-value=30 Score=31.94 Aligned_cols=63 Identities=17% Similarity=0.153 Sum_probs=46.4
Q ss_pred cEEEEEEEeCCc--c---cccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeC
Q 003054 59 REAVPIYVDNQY--G---EEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 124 (852)
Q Consensus 59 ~~vaii~~d~~~--G---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~ 124 (852)
.+|+||...|+- | ......+.+.+++.|.++.....++ .+ +++...|.+..+.+.|+|+..+-
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~--Dd-~~i~~al~~a~~~~~DlVittGG 75 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVA--DG-SPVGEALRKAIDDDVDVILTSGG 75 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEEC--SS-HHHHHHHHHHHHTTCSEEEEESC
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeC--CH-HHHHHHHHHHHhCCCCEEEECCC
Confidence 578888865542 2 3456778889999999998777765 34 67888888776567899998853
No 296
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=47.53 E-value=40 Score=31.05 Aligned_cols=63 Identities=11% Similarity=0.045 Sum_probs=46.6
Q ss_pred EEEEEEEeCC--cc---cccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcC-CceEEEEEeC
Q 003054 60 EAVPIYVDNQ--YG---EEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTM-QTRVFILHML 124 (852)
Q Consensus 60 ~vaii~~d~~--~G---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~-~~~viv~~~~ 124 (852)
+|+||...|+ .| ......+.+.|++.|.++.....++. +.+++...|.+..+. +.|+||+.+-
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~D--d~~~i~~~l~~~~~~~~~DlVittGG 71 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPD--EPPMIKKVLRLWADREGLDLILTNGG 71 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCC--CHHHHHHHHHHHHhcCCCCEEEEcCC
Confidence 6777776554 22 23457788899999999988877763 367788888887754 7899998854
No 297
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=47.30 E-value=1.1e+02 Score=30.68 Aligned_cols=87 Identities=15% Similarity=0.091 Sum_probs=63.2
Q ss_pred HHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeC-
Q 003054 46 AGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML- 124 (852)
Q Consensus 46 ~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~- 124 (852)
...+|......|..-+.++. |..|-.+..+.+...-+..++.|.....+- + . + ++...+..++|.|++...
T Consensus 81 p~~~A~~y~~~GA~~IsVlt-d~~~f~Gs~~~L~~ir~~v~lPVl~Kdfi~-d--~--~--qi~ea~~~GAD~VlLi~a~ 152 (272)
T 3tsm_A 81 PPALAKAYEEGGAACLSVLT-DTPSFQGAPEFLTAARQACSLPALRKDFLF-D--P--Y--QVYEARSWGADCILIIMAS 152 (272)
T ss_dssp HHHHHHHHHHTTCSEEEEEC-CSTTTCCCHHHHHHHHHTSSSCEEEESCCC-S--T--H--HHHHHHHTTCSEEEEETTT
T ss_pred HHHHHHHHHHCCCCEEEEec-cccccCCCHHHHHHHHHhcCCCEEECCccC-C--H--H--HHHHHHHcCCCEEEEcccc
Confidence 45667777788999999888 444444677788777667788876554321 1 2 2 577888899999988863
Q ss_pred --hhhHHHHHHHHHHcCC
Q 003054 125 --PSLGSRIFEKANEIGL 140 (852)
Q Consensus 125 --~~~~~~i~~~a~~~G~ 140 (852)
..+...+++.++++||
T Consensus 153 L~~~~l~~l~~~a~~lGl 170 (272)
T 3tsm_A 153 VDDDLAKELEDTAFALGM 170 (272)
T ss_dssp SCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHcCC
Confidence 3567889999999998
No 298
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=46.77 E-value=2.3e+02 Score=28.25 Aligned_cols=68 Identities=9% Similarity=0.132 Sum_probs=41.9
Q ss_pred HHHHHHHHHC-CCccceEEEecCCCCCCCCCChhHHHHHHhc-Cc-ccEEEeeeeeecC---cceeeeccccccccceEE
Q 003054 381 DVFKAVIQEL-PYAVAYDFVPYGQPDGSSSGSYNDLVYQVFL-GE-FDAVVGDITIVFN---RSNYVDFTLPYTESGVSM 454 (852)
Q Consensus 381 dl~~~ia~~l-~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~-g~-~D~~~g~~~it~~---r~~~vdft~p~~~~~~~~ 454 (852)
++++.+.++. |.++++.+ ++-..++.++.. |. +|+.+..-..... ....++...||....+++
T Consensus 21 ~l~~~F~~~~~gi~V~~~~-----------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvl 89 (295)
T 3cij_A 21 AFKRAFEEKHPNVEVQTEA-----------AGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAKNQIVL 89 (295)
T ss_dssp HHHHHHHHHCTTCEEEEEE-----------ECHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEECCEEE
T ss_pred HHHHHHHHHCCCceEEEEe-----------CcHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEeeeEEE
Confidence 5777777774 76554433 234678889988 75 9998753211011 112234567788888999
Q ss_pred EEEcc
Q 003054 455 IVPIK 459 (852)
Q Consensus 455 vv~~~ 459 (852)
++++.
T Consensus 90 ~~~~~ 94 (295)
T 3cij_A 90 AYRND 94 (295)
T ss_dssp EECTT
T ss_pred EEeCC
Confidence 98865
No 299
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=46.75 E-value=38 Score=35.35 Aligned_cols=81 Identities=7% Similarity=-0.012 Sum_probs=51.0
Q ss_pred CcEEEEEEEe--CCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHH
Q 003054 58 WREAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKA 135 (852)
Q Consensus 58 w~~vaii~~d--~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a 135 (852)
-+.|+++..+ +.|.......+.+++++.|..+..... . ..+.+.....+..+.+.+.|.||+.........+...+
T Consensus 61 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~-~~~~~~~~~~l~~l~~~~vdGiIi~~~~~~~~~~~~~~ 138 (349)
T 1jye_A 61 SLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMV-E-RSGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEA 138 (349)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-C-SSSHHHHHHHHHHHHTTTCSCEEEESCCCHHHHHHHHH
T ss_pred CCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeC-C-CCcHHHHHHHHHHHHHCCCCEEEEecCCCChhHHHHHH
Confidence 4578888854 457777888999999999998765321 1 11123445667788888999998874322222233444
Q ss_pred HHcCC
Q 003054 136 NEIGL 140 (852)
Q Consensus 136 ~~~G~ 140 (852)
.+.|+
T Consensus 139 ~~~~i 143 (349)
T 1jye_A 139 ACTNV 143 (349)
T ss_dssp HTTTS
T ss_pred hhCCC
Confidence 45554
No 300
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=46.50 E-value=24 Score=35.12 Aligned_cols=80 Identities=10% Similarity=-0.032 Sum_probs=56.9
Q ss_pred EEEEEE--EeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCC-ceEEEEEeCh-hhHHHHHHHH
Q 003054 60 EAVPIY--VDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ-TRVFILHMLP-SLGSRIFEKA 135 (852)
Q Consensus 60 ~vaii~--~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~-~~viv~~~~~-~~~~~i~~~a 135 (852)
+|+++. .+++|.....+.+.+++++.|.++.....- ...+.......+..+.+.+ +|.||+.... ......++++
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~ 80 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTK-DDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQY 80 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCS-STTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCC-CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHH
Confidence 567776 346688888999999999999987654211 1123344556777887888 9999988743 4456778888
Q ss_pred HHcCC
Q 003054 136 NEIGL 140 (852)
Q Consensus 136 ~~~G~ 140 (852)
.+.|+
T Consensus 81 ~~~~i 85 (276)
T 3ksm_A 81 RARNI 85 (276)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88886
No 301
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=46.40 E-value=50 Score=30.75 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=44.4
Q ss_pred EEEEEEEeCC-c------c---cccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhc-CCceEEEEEeC
Q 003054 60 EAVPIYVDNQ-Y------G---EEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFILHML 124 (852)
Q Consensus 60 ~vaii~~d~~-~------G---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~viv~~~~ 124 (852)
+|+||...|. + | ....+.+.+.|++.|.+|.....++. +.+.+...+.+..+ .++|+|+..+-
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~D--d~~~i~~al~~~~a~~~~DlVittGG 90 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPD--DKIKILKAFTDALSIDEVDVIISTGG 90 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHTCTTCCEEEEESC
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHhcCCCCEEEecCC
Confidence 7888885441 1 1 12346788999999999998888763 35667777776553 57899998864
No 302
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=46.30 E-value=82 Score=31.19 Aligned_cols=74 Identities=11% Similarity=0.011 Sum_probs=43.9
Q ss_pred CCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCCceEeecc--cccccceEEEecCCCCchhhHHHHH
Q 003054 601 DERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCSKYAMIEP--KFKTAGFGFVFPLHSPLVHDVSKAI 678 (852)
Q Consensus 601 ~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~~~~k~spl~~~in~~i 678 (852)
........++.+...+++..|. ..+++-+.. +....... .+..+.. ......++++.+++.+.-..+...+
T Consensus 212 ~~~~~~~~~~~~~~~~~v~~g~----Gi~~lp~~~-~~~~~~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~ 284 (300)
T 3mz1_A 212 SGRYTMAANESTTYLAAARAGL----GVIQAPLFM-VREDLRNG--TMVPVLPDWQVEPMPIYLVYPPNRHLSSRLRVFA 284 (300)
T ss_dssp CCCEEEEESSHHHHHHHHHTTC----CBEEEEHHH-HHHHHHHT--SEEECCTTCBCCCEEEEEEECTTCCCCHHHHHHH
T ss_pred eccceEEECCHHHHHHHHHhCC----CEEeccHHH-HHHHHhCC--CeEEeCCCcCCCCccEEEEEcCcccCcHHHHHHH
Confidence 3334567788999999999998 455555443 33333332 1333322 3345677888888866655555555
Q ss_pred Hhc
Q 003054 679 LNV 681 (852)
Q Consensus 679 l~l 681 (852)
..+
T Consensus 285 ~~l 287 (300)
T 3mz1_A 285 DWV 287 (300)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 303
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=46.17 E-value=15 Score=37.33 Aligned_cols=56 Identities=9% Similarity=0.204 Sum_probs=47.5
Q ss_pred cccccchhHHHHHHHhhhcc--ccccccchhhHHHHHHHHHHHHHHHHhhhhccceee
Q 003054 507 AGQQVGTSFWFSFSTMVFSQ--RERVISNLARIVVIVWCFVVLILTQSYTASLTSLLT 562 (852)
Q Consensus 507 ~~~~~~~~~~~~~~~l~~~~--~~~~~s~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt 562 (852)
...++.+++||++.++...| .-.|.+..+|++.+++.++++.+...+.+.+...+.
T Consensus 90 ~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~ 147 (280)
T 3ukm_A 90 WNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT 147 (280)
T ss_dssp CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999887 346899999999999999999999999888776553
No 304
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=46.05 E-value=35 Score=34.41 Aligned_cols=79 Identities=8% Similarity=-0.034 Sum_probs=54.9
Q ss_pred CcEEEEEEEe--CCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHH
Q 003054 58 WREAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKA 135 (852)
Q Consensus 58 w~~vaii~~d--~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a 135 (852)
-+.|+++..+ ++|.......+.+++++.|.++.... ...+.......+..+.+.++|.||+...... ...++++
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l 91 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSN---SDQNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAEF 91 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe---CCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHHH
Confidence 3578888853 66778889999999999999876532 1223444566778888889999988764322 3355666
Q ss_pred HHcCC
Q 003054 136 NEIGL 140 (852)
Q Consensus 136 ~~~G~ 140 (852)
.+.|+
T Consensus 92 ~~~~i 96 (289)
T 2fep_A 92 KRSPV 96 (289)
T ss_dssp HHSSS
T ss_pred HhcCC
Confidence 67775
No 305
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=45.91 E-value=44 Score=33.65 Aligned_cols=83 Identities=8% Similarity=0.043 Sum_probs=53.2
Q ss_pred HHHHcCCcEEEEEE-EeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHH
Q 003054 52 IIKAFGWREAVPIY-VDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSR 130 (852)
Q Consensus 52 ~l~~~gw~~vaii~-~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~ 130 (852)
-++.-.-+.|+++. .+++|.....+.+.+++++.|.++.....-. +.. ....+..+.+.+.|.||+....... .
T Consensus 6 ~L~~~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~---~~~-~~~~~~~l~~~~vdgiIi~~~~~~~-~ 80 (289)
T 3k9c_A 6 KLRQASSRLLGVVFELQQPFHGDLVEQIYAAATRRGYDVMLSAVAP---SRA-EKVAVQALMRERCEAAILLGTRFDT-D 80 (289)
T ss_dssp -------CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBT---TBC-HHHHHHHHTTTTEEEEEEETCCCCH-H
T ss_pred hhhcCCCCEEEEEEecCCchHHHHHHHHHHHHHHCCCEEEEEeCCC---CHH-HHHHHHHHHhCCCCEEEEECCCCCH-H
Confidence 34333446788887 1245677888999999999999887654322 122 5667788888899999988654333 4
Q ss_pred HHHHHHHcCC
Q 003054 131 IFEKANEIGL 140 (852)
Q Consensus 131 i~~~a~~~G~ 140 (852)
.++.+.+ |+
T Consensus 81 ~~~~~~~-~i 89 (289)
T 3k9c_A 81 ELGALAD-RV 89 (289)
T ss_dssp HHHHHHT-TS
T ss_pred HHHHHHc-CC
Confidence 5566655 65
No 306
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=45.82 E-value=30 Score=35.38 Aligned_cols=79 Identities=11% Similarity=0.015 Sum_probs=53.9
Q ss_pred EEEEEEEeCC-cccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChh-hHHHHHHHHHH
Q 003054 60 EAVPIYVDNQ-YGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS-LGSRIFEKANE 137 (852)
Q Consensus 60 ~vaii~~d~~-~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~-~~~~i~~~a~~ 137 (852)
+|+++..+.. |.....+.+.+++++.|.++.... +...+.......+.++.+.++|.||+..... .....++++.+
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~--~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 80 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFV--PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALE 80 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEEC--CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH
Confidence 5777763322 778888999999999998876432 1122344556677788888999998875443 33566778888
Q ss_pred cCC
Q 003054 138 IGL 140 (852)
Q Consensus 138 ~G~ 140 (852)
.|+
T Consensus 81 ~~i 83 (313)
T 2h3h_A 81 MGI 83 (313)
T ss_dssp TTC
T ss_pred CCC
Confidence 776
No 307
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=45.75 E-value=47 Score=30.30 Aligned_cols=87 Identities=9% Similarity=0.070 Sum_probs=51.8
Q ss_pred cEEEEEEEeCCcc--cccHHHHHHHHHhCCceeeeeeecCCCCChH-HHHHHHHHhhcCCceEEEEEeChh--h--HHHH
Q 003054 59 REAVPIYVDNQYG--EEMIPSLTDALQAIDTRVPYRSVISPLATDD-QIEKELYKLFTMQTRVFILHMLPS--L--GSRI 131 (852)
Q Consensus 59 ~~vaii~~d~~~G--~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~-d~~~~l~~l~~~~~~viv~~~~~~--~--~~~i 131 (852)
++|.|+| .+.+| +.+++.+.+.+++.|.++.... + . +. +....+..+. +.|.||+.+..- . ...+
T Consensus 5 ~kv~IvY-~S~~GnT~~iA~~ia~~l~~~g~~v~~~~-~--~--~~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~~ 76 (159)
T 3fni_A 5 TSIGVFY-VSEYGYSDRLAQAIINGITKTGVGVDVVD-L--G--AAVDLQELRELVG--RCTGLVIGMSPAASAASIQGA 76 (159)
T ss_dssp CEEEEEE-CTTSTTHHHHHHHHHHHHHHTTCEEEEEE-S--S--SCCCHHHHHHHHH--TEEEEEEECCBTTSHHHHHHH
T ss_pred CEEEEEE-ECCChHHHHHHHHHHHHHHHCCCeEEEEE-C--c--CcCCHHHHHHHHH--hCCEEEEEcCcCCCCccHHHH
Confidence 5888998 44555 5677888888988888764332 2 1 22 3444444444 467887776532 2 1356
Q ss_pred HHHHHHcCCcccceEEEEcCcc
Q 003054 132 FEKANEIGLMNKGCVWIMTDGM 153 (852)
Q Consensus 132 ~~~a~~~G~~~~~~vwi~~~~~ 153 (852)
+.......+..+....+++.+|
T Consensus 77 l~~l~~~~~~~k~va~fgs~g~ 98 (159)
T 3fni_A 77 LSTILGSVNEKQAVGIFETGGG 98 (159)
T ss_dssp HHHHHHHCCTTSEEEEECCSSS
T ss_pred HHHHHhhcccCCEEEEEEcCCC
Confidence 6666666665554455555444
No 308
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=45.01 E-value=40 Score=23.49 Aligned_cols=13 Identities=0% Similarity=0.005 Sum_probs=5.6
Q ss_pred HHHHHHHHHhhcc
Q 003054 735 IFMAVFIHQHWNV 747 (852)
Q Consensus 735 vf~~e~~~~~r~~ 747 (852)
++++.+++++|++
T Consensus 28 ~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 28 ALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHhhhhHh
Confidence 3333444444444
No 309
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=44.80 E-value=47 Score=34.20 Aligned_cols=62 Identities=10% Similarity=0.084 Sum_probs=47.1
Q ss_pred cEEEEEEE----eC-CcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeC
Q 003054 59 REAVPIYV----DN-QYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 124 (852)
Q Consensus 59 ~~vaii~~----d~-~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~ 124 (852)
.+|++|+. ++ .|-....+.+.+++++.|.++...... ++.+....+..+.+.+.|.||+.+.
T Consensus 5 ~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~g~~~~~~~~~----~~~~~~~~l~~l~~~~~dgIi~~~~ 71 (318)
T 2fqx_A 5 FVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCKYVTAS----TDAEYVPSLSAFADENMGLVVACGS 71 (318)
T ss_dssp CEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTCEEEEEECC----SGGGHHHHHHHHHHTTCSEEEEEST
T ss_pred cEEEEEEcCCCCCCccHHHHHHHHHHHHHHHhCCeEEEEeCC----CHHHHHHHHHHHHHcCCCEEEECCh
Confidence 57899885 23 577778889999999999987665431 2445667888888889999998764
No 310
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=44.73 E-value=27 Score=36.58 Aligned_cols=78 Identities=12% Similarity=0.025 Sum_probs=53.5
Q ss_pred cEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHH
Q 003054 59 REAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKAN 136 (852)
Q Consensus 59 ~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~ 136 (852)
+.|+++.. +++|.....+.+.+++++.|.++..... ..+.......+..+.+.++|.||+...... ...++.+.
T Consensus 67 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l~ 142 (348)
T 3bil_A 67 NTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNS---NEDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLEDLQ 142 (348)
T ss_dssp -CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEEC---TTCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHH
Confidence 46888874 4567788899999999999988765321 223344556777888889999988765433 24566677
Q ss_pred HcCC
Q 003054 137 EIGL 140 (852)
Q Consensus 137 ~~G~ 140 (852)
+.|+
T Consensus 143 ~~~i 146 (348)
T 3bil_A 143 KQGM 146 (348)
T ss_dssp HC-C
T ss_pred hCCC
Confidence 7775
No 311
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=44.45 E-value=36 Score=35.12 Aligned_cols=80 Identities=10% Similarity=-0.026 Sum_probs=54.3
Q ss_pred CCcEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHH
Q 003054 57 GWREAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEK 134 (852)
Q Consensus 57 gw~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~ 134 (852)
.-+.|+++.. +++|.......+.+++++.|..+..... ..+.......+..+.+.++|.||+...... ...++.
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 137 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANS---DNDVEKEEKVLETFLSKQVDGIVYMGSSLD-EKIRTS 137 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECSSCCC-HHHHHH
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEEC---CCChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHHHH
Confidence 3457888884 3567788899999999999998765421 223344556677888889999988764222 234555
Q ss_pred HHHcCC
Q 003054 135 ANEIGL 140 (852)
Q Consensus 135 a~~~G~ 140 (852)
+.+.|+
T Consensus 138 l~~~~i 143 (332)
T 2o20_A 138 LKNSRT 143 (332)
T ss_dssp HHHHCC
T ss_pred HHhCCC
Confidence 666665
No 312
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=44.41 E-value=2.3e+02 Score=27.70 Aligned_cols=74 Identities=12% Similarity=0.041 Sum_probs=47.7
Q ss_pred EEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEeeeeeecCcc---eeeeccccccccce
Q 003054 376 TGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFNRS---NYVDFTLPYTESGV 452 (852)
Q Consensus 376 ~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~~~it~~r~---~~vdft~p~~~~~~ 452 (852)
.|+.-+|+..+.++.|.++.+.+ . .-..++.++.+|.+|+.+..-....... ....-..|+....+
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~--~---------gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~l 86 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYKVDVIA--A---------GTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDF 86 (237)
T ss_dssp HTHHHHHHHHHHHHHCCEEEEEE--E---------CHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHhCceEEEEE--c---------ChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCE
Confidence 35566888888888886444443 2 3457899999999999865432221111 01112467888899
Q ss_pred EEEEEccC
Q 003054 453 SMIVPIKD 460 (852)
Q Consensus 453 ~~vv~~~~ 460 (852)
++++|...
T Consensus 87 VlV~P~~~ 94 (237)
T 3muq_A 87 VIVGPKAD 94 (237)
T ss_dssp EEEECTTC
T ss_pred EEEEeCCC
Confidence 99999653
No 313
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=44.32 E-value=95 Score=27.42 Aligned_cols=86 Identities=12% Similarity=0.069 Sum_probs=53.9
Q ss_pred cEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChh----hHHHHHHH
Q 003054 59 REAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS----LGSRIFEK 134 (852)
Q Consensus 59 ~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~----~~~~i~~~ 134 (852)
.+|.+.....+.-.-....+...|+..|.+|.+--.. .+.++ .+..+++.+||+|.+++... ....++++
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~---~p~e~---~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~ 77 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVL---SPQEL---FIKAAIETKADAILVSSLYGQGEIDCKGLRQK 77 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEE---ECHHH---HHHHHHHHTCSEEEEEECSSTHHHHHTTHHHH
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCC---CCHHH---HHHHHHhcCCCEEEEEecCcCcHHHHHHHHHH
Confidence 3555555555533334556667889999999865432 11333 45566667999999987643 35667888
Q ss_pred HHHcCCcccceEEEEcC
Q 003054 135 ANEIGLMNKGCVWIMTD 151 (852)
Q Consensus 135 a~~~G~~~~~~vwi~~~ 151 (852)
.++.|.. .-.+|+++.
T Consensus 78 l~~~g~~-~i~v~vGG~ 93 (137)
T 1ccw_A 78 CDEAGLE-GILLYVGGN 93 (137)
T ss_dssp HHHTTCT-TCEEEEEES
T ss_pred HHhcCCC-CCEEEEECC
Confidence 8888863 234555543
No 314
>3fd3_A Chromosome replication initiation inhibitor prote; structural genomics, LYSR, PSI-2, structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=43.76 E-value=1.9e+02 Score=26.32 Aligned_cols=67 Identities=9% Similarity=-0.082 Sum_probs=40.8
Q ss_pred EeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEeeeeeecCcceeeeccccccccceEEEE
Q 003054 377 GYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIV 456 (852)
Q Consensus 377 G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv 456 (852)
.+-.+++..+.++.+ +++++... +..++.+.+.+|..|+++.. .......+. ..++....+++++
T Consensus 15 ~~l~~~l~~f~~~~~--v~l~l~~~---------~~~~~~~~l~~g~d~~~i~~---~~~~~~~l~-~~~l~~~~~~~v~ 79 (208)
T 3fd3_A 15 TWFLDAVSKFTGGSD--YLVNIAVD---------DQDHTVEWLRGGRVLAAVTA---HDKPVQGCR-VTPLGVLRYHATA 79 (208)
T ss_dssp TTHHHHHHHHHHTSS--CEEEEEEC---------CSSCHHHHHHTTSCSEEEES---CCSCCTTCE-EEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhcC--eEEEEEeC---------CcHhHHHHHhcCcceEEEec---CCCCCCCce-EEEccceEEEEEE
Confidence 345688889988885 56666543 34578999999955554432 111112222 3566777777777
Q ss_pred Ec
Q 003054 457 PI 458 (852)
Q Consensus 457 ~~ 458 (852)
+.
T Consensus 80 ~~ 81 (208)
T 3fd3_A 80 SP 81 (208)
T ss_dssp CH
T ss_pred Ch
Confidence 64
No 315
>3r6u_A Choline-binding protein; substrate binding protein, ABC-transporter, extracellular, transport protein; 1.61A {Bacillus subtilis} SCOP: c.94.1.0 PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A 3ppr_A*
Probab=43.75 E-value=1.5e+02 Score=29.86 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=50.5
Q ss_pred CcCCHHHHHhcC--CeEEEEe------CchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHH
Q 003054 569 TITDVKMLIKRG--DNVGYQK------GSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLL 640 (852)
Q Consensus 569 ~i~sl~dL~~~~--~~vg~~~------~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~ 640 (852)
.|+|++||.+.. ..+|+.. |.-...+.+.++++...+...+ .-...+++.+|+ ..++....+...+
T Consensus 130 ~l~sisDL~~~~~~~~~g~~~ef~~r~G~G~~~l~~~YGl~~~~~~~~~-~g~~~~A~~~~~----~~v~~~wsp~~~~- 203 (284)
T 3r6u_A 130 HLETVSDVKKWAPQLKLGVDNYWMKLKGNGYQDFTKTYGMTFGGTYPMQ-IGLVYDAVKSGK----MDIVLAYSTDGRI- 203 (284)
T ss_dssp TCCBSGGGGGGGGGCEEEECTTGGGCSSSSHHHHHHHHCCCCSEEEECC-GGGHHHHHHHTS----CSEEEEETTCHHH-
T ss_pred CCCCHHHHHhhhhceeeccCcccccCchhHHHHHHHHcCCCcccccccC-HHHHHHHHHcCC----CeEEEEeCCCchh-
Confidence 389999998764 3677753 2334455566676433344443 335678999998 7777666544332
Q ss_pred HhhcCCceEeeccc---ccccceEEEecCC
Q 003054 641 IGQYCSKYAMIEPK---FKTAGFGFVFPLH 667 (852)
Q Consensus 641 ~~~~~~~~~~v~~~---~~~~~~~~~~~k~ 667 (852)
.++ .+..+.+. |.......+++++
T Consensus 204 -~~~--dL~~LeD~k~~fp~~~v~~vvr~~ 230 (284)
T 3r6u_A 204 -KSY--GLKMLKDDKQFFPPYDCSPVVPEK 230 (284)
T ss_dssp -HHT--TEEECBCTTCCSCCCBEEEEEEHH
T ss_pred -hcC--CceEcCCCcccCCccceeEEEcHH
Confidence 222 24444332 3333445555554
No 316
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=43.73 E-value=32 Score=33.64 Aligned_cols=109 Identities=14% Similarity=0.084 Sum_probs=70.3
Q ss_pred cEEeeecCCCCCCCCCCCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeec
Q 003054 16 PILSFSATSPSLTSIRSPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVI 95 (852)
Q Consensus 16 P~Is~~ats~~lt~~~~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~ 95 (852)
.+||=+++...|.+.-.-=+.-+..+.....+++...-+ ++ ++++++...+.. ...+.+.+.| |.++.....
T Consensus 66 VIISRGgta~~Lr~~~~iPVV~I~vs~~Dil~aL~~a~~-~~-~kIavVg~~~~~--~~~~~i~~ll---~~~i~~~~~- 137 (225)
T 2pju_A 66 AIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQFLAKAGK-LT-SSIGVVTYQETI--PALVAFQKTF---NLRLDQRSY- 137 (225)
T ss_dssp EEEEEHHHHHHHHTTCSSCEEEECCCHHHHHHHHHHTTC-TT-SCEEEEEESSCC--HHHHHHHHHH---TCCEEEEEE-
T ss_pred EEEeCChHHHHHHhhCCCCEEEecCCHHHHHHHHHHHHh-hC-CcEEEEeCchhh--hHHHHHHHHh---CCceEEEEe-
Confidence 578878877777653223366677777777777777644 44 589988754431 1233343333 566554432
Q ss_pred CCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHcCCc
Q 003054 96 SPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEIGLM 141 (852)
Q Consensus 96 ~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~G~~ 141 (852)
.+.++....+.++++.+.++||-.+ ...+.|+++||.
T Consensus 138 ---~~~ee~~~~i~~l~~~G~~vVVG~~------~~~~~A~~~Gl~ 174 (225)
T 2pju_A 138 ---ITEEDARGQINELKANGTEAVVGAG------LITDLAEEAGMT 174 (225)
T ss_dssp ---SSHHHHHHHHHHHHHTTCCEEEESH------HHHHHHHHTTSE
T ss_pred ---CCHHHHHHHHHHHHHCCCCEEECCH------HHHHHHHHcCCc
Confidence 2367899999999999999977532 346677888983
No 317
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=43.35 E-value=20 Score=36.44 Aligned_cols=57 Identities=12% Similarity=0.175 Sum_probs=41.1
Q ss_pred cccchhHHHHHHHhhhcc-c-cc--ccc----chhhHHHHHHHHHHHHHHHHhhhhccceeeecc
Q 003054 509 QQVGTSFWFSFSTMVFSQ-R-ER--VIS----NLARIVVIVWCFVVLILTQSYTASLTSLLTVQQ 565 (852)
Q Consensus 509 ~~~~~~~~~~~~~l~~~~-~-~~--~~s----~~~R~v~~~w~~~~lil~~~Yta~L~s~Lt~~~ 565 (852)
.++.+++|+.+.++...+ + .. |.. ...++++++.++.++++.+.++|-+.+.+....
T Consensus 179 ~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 179 GTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999766 3 21 322 234677777888899999999999998876543
No 318
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=43.06 E-value=38 Score=33.98 Aligned_cols=79 Identities=6% Similarity=0.097 Sum_probs=54.5
Q ss_pred cEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh-hhHHHHHHHH
Q 003054 59 REAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-SLGSRIFEKA 135 (852)
Q Consensus 59 ~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~-~~~~~i~~~a 135 (852)
+.|+++.. +++|.....+.+.+++++.|.++..... ..+...-...+..+.+.++|.||+.... +.....++++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDS---QNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEA 78 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecC---CCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHH
Confidence 46777774 4667788899999999999988765421 1223344556777778899999886543 3334567778
Q ss_pred HHcCC
Q 003054 136 NEIGL 140 (852)
Q Consensus 136 ~~~G~ 140 (852)
.+.|+
T Consensus 79 ~~~~i 83 (283)
T 2ioy_A 79 NSKNI 83 (283)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88776
No 319
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=41.65 E-value=34 Score=31.69 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=43.3
Q ss_pred cEEEEEEEeCCc--c---cccHHHHHHH----HHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeC
Q 003054 59 REAVPIYVDNQY--G---EEMIPSLTDA----LQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 124 (852)
Q Consensus 59 ~~vaii~~d~~~--G---~~~~~~l~~~----l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~ 124 (852)
-+++||...|+- | ......+.+. +++.|.++.....++. +.+++...|.+..+.+.|+|+..+-
T Consensus 6 ~~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~D--d~~~I~~~l~~a~~~~~DlVittGG 78 (167)
T 2g2c_A 6 IKSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVPE--GYDTVVEAIATALKQGARFIITAGG 78 (167)
T ss_dssp EEEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEECS--SHHHHHHHHHHHHHTTCSEEEEESC
T ss_pred cEEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCC--CHHHHHHHHHHHHhCCCCEEEECCC
Confidence 367777755543 2 2345678888 8999999888777763 3677888888877656899988854
No 320
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=41.65 E-value=24 Score=35.65 Aligned_cols=87 Identities=10% Similarity=-0.001 Sum_probs=55.7
Q ss_pred HHHHHcCCcEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhH
Q 003054 51 AIIKAFGWREAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLG 128 (852)
Q Consensus 51 ~~l~~~gw~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~ 128 (852)
+-++.-.-++|+++.. +++|.....+.+.+++++.|.++..... ..+.......+..+.+.++|.||+.......
T Consensus 13 r~L~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 89 (293)
T 2iks_A 13 AGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS---EDQPDNEMRCIEHLLQRQVDAIIVSTSLPPE 89 (293)
T ss_dssp -----CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSCTT
T ss_pred HHhhcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCc
Confidence 3333334468888884 4567788899999999999998764321 1233445567778888899999887654322
Q ss_pred HHHHHHHHHcCC
Q 003054 129 SRIFEKANEIGL 140 (852)
Q Consensus 129 ~~i~~~a~~~G~ 140 (852)
..+++.+.+.|+
T Consensus 90 ~~~~~~~~~~~i 101 (293)
T 2iks_A 90 HPFYQRWANDPF 101 (293)
T ss_dssp CHHHHTTTTSSS
T ss_pred HHHHHHHHhCCC
Confidence 335566666665
No 321
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=41.45 E-value=32 Score=35.05 Aligned_cols=79 Identities=4% Similarity=-0.004 Sum_probs=54.8
Q ss_pred cEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhh-HHHHHHHH
Q 003054 59 REAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSL-GSRIFEKA 135 (852)
Q Consensus 59 ~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~-~~~i~~~a 135 (852)
.+|+++.. ++.|.....+.+.+++++.|.++..... ..+.......+..+.+.++|.||+...... ....++.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG---QQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEA 79 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHH
Confidence 46788874 4567788889999999999988765421 123344556677777789999988765432 24566777
Q ss_pred HHcCC
Q 003054 136 NEIGL 140 (852)
Q Consensus 136 ~~~G~ 140 (852)
.+.|+
T Consensus 80 ~~~~i 84 (306)
T 2vk2_A 80 KDAEI 84 (306)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77775
No 322
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=41.36 E-value=51 Score=32.74 Aligned_cols=77 Identities=12% Similarity=0.031 Sum_probs=54.1
Q ss_pred CcEEEEEEEe--CCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHH-H
Q 003054 58 WREAVPIYVD--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFE-K 134 (852)
Q Consensus 58 w~~vaii~~d--~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~-~ 134 (852)
-+.|+++..+ +.|.....+.+.+++++.|.++..... ..+.......+..+.+.++|.||+.... ...++ .
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~~dgiIi~~~~---~~~~~~~ 81 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNS---DNDIKKAQGYLATFVSHNCTGMISTAFN---ENIIENT 81 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECGGG---HHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEecCC---hHHHHHH
Confidence 3578888853 667888899999999999998765322 2234556677888888999999997733 23466 7
Q ss_pred HHHcCC
Q 003054 135 ANEIGL 140 (852)
Q Consensus 135 a~~~G~ 140 (852)
+.+.|+
T Consensus 82 l~~~~i 87 (277)
T 3e61_A 82 LTDHHI 87 (277)
T ss_dssp HHHC-C
T ss_pred HHcCCC
Confidence 777776
No 323
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=40.96 E-value=1.4e+02 Score=29.88 Aligned_cols=79 Identities=8% Similarity=-0.010 Sum_probs=54.2
Q ss_pred CcEEEEEE-------EeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHH
Q 003054 58 WREAVPIY-------VDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSR 130 (852)
Q Consensus 58 w~~vaii~-------~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~ 130 (852)
-+.|+++. .++.|-....+.+.+++++.|..+... ....+.......+..+.+.++|.||+...... ..
T Consensus 7 s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~~ 82 (295)
T 3hcw_A 7 TYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTT---VSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN-DP 82 (295)
T ss_dssp SCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEEC---CCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT-CH
T ss_pred CcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEE---cCCCChHHHHHHHHHHHhCCcCEEEEcCcccC-hH
Confidence 35788887 246678888999999999999987543 21222333455677788889999998754322 24
Q ss_pred HHHHHHHcCC
Q 003054 131 IFEKANEIGL 140 (852)
Q Consensus 131 i~~~a~~~G~ 140 (852)
.++.+.+.|+
T Consensus 83 ~~~~l~~~~i 92 (295)
T 3hcw_A 83 IKQMLIDESM 92 (295)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhCCC
Confidence 5667777776
No 324
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=40.02 E-value=1.7e+02 Score=24.84 Aligned_cols=56 Identities=11% Similarity=0.004 Sum_probs=39.0
Q ss_pred ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh--hhHHHHHHHHHH
Q 003054 73 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP--SLGSRIFEKANE 137 (852)
Q Consensus 73 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~--~~~~~i~~~a~~ 137 (852)
...+.+.+.|+..|.+|.. . .+....+..+++..+|+|++.... .++..++++.++
T Consensus 18 ~~~~~l~~~L~~~g~~v~~---~------~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 75 (142)
T 3cg4_A 18 HVRIAVKTILSDAGFHIIS---A------DSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILD 75 (142)
T ss_dssp HHHHHHHHHHHHTTCEEEE---E------SSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCeEEEE---e------CCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 4567788888888876532 1 113445666677789999998654 357788888887
No 325
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=39.68 E-value=50 Score=32.75 Aligned_cols=79 Identities=8% Similarity=0.055 Sum_probs=54.5
Q ss_pred cEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChh-hHHHHHHHH
Q 003054 59 REAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS-LGSRIFEKA 135 (852)
Q Consensus 59 ~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~-~~~~i~~~a 135 (852)
+.|+++.. +++|-....+.+.+++++.|.++..... ..+...-...+..+.+.++|.|++..... .....++++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS---QNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA 78 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 56788774 4667788899999999999988765321 12233445567778888999998865433 234567777
Q ss_pred HHcCC
Q 003054 136 NEIGL 140 (852)
Q Consensus 136 ~~~G~ 140 (852)
.+.|.
T Consensus 79 ~~~~i 83 (271)
T 2dri_A 79 NQANI 83 (271)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77775
No 326
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=39.61 E-value=37 Score=34.21 Aligned_cols=79 Identities=8% Similarity=-0.038 Sum_probs=53.7
Q ss_pred CcEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHH---HHHHhhcCCceEEEEEeChhhHHHHH
Q 003054 58 WREAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEK---ELYKLFTMQTRVFILHMLPSLGSRIF 132 (852)
Q Consensus 58 w~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~---~l~~l~~~~~~viv~~~~~~~~~~i~ 132 (852)
-++|+++.. +++|.....+.+.+++++.|.++..... +.+...... .+..+.+.++|.||+...... ...+
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~ 83 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATG---CGESTPREQALEAVRFLIGRDCDGVVVISHDLH-DEDL 83 (290)
T ss_dssp CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECC---CSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HHHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeC---CCchhhhhhHHHHHHHHHhcCccEEEEecCCCC-HHHH
Confidence 357888874 4567788899999999999998764321 112233444 677788889999998764433 3456
Q ss_pred HHHHHcCC
Q 003054 133 EKANEIGL 140 (852)
Q Consensus 133 ~~a~~~G~ 140 (852)
+++.+.|+
T Consensus 84 ~~l~~~~i 91 (290)
T 2rgy_A 84 DELHRMHP 91 (290)
T ss_dssp HHHHHHCS
T ss_pred HHHhhcCC
Confidence 66666775
No 327
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=39.19 E-value=70 Score=33.09 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=56.6
Q ss_pred cEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHH
Q 003054 59 REAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKAN 136 (852)
Q Consensus 59 ~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~ 136 (852)
+.|+++.. ++.|-....+.+.+++++.|..+..... +.+.......+..+.+.++|.||+....... ..++.+.
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~l~ 144 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVT---DYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAMLD 144 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEEC---TTCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHHHH
Confidence 47888884 4668888899999999999998754321 2234556677888888999999987654332 5667777
Q ss_pred HcCC
Q 003054 137 EIGL 140 (852)
Q Consensus 137 ~~G~ 140 (852)
+.|+
T Consensus 145 ~~~i 148 (344)
T 3kjx_A 145 AAGI 148 (344)
T ss_dssp HCSS
T ss_pred hCCC
Confidence 7776
No 328
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=39.15 E-value=48 Score=32.83 Aligned_cols=78 Identities=14% Similarity=0.043 Sum_probs=53.8
Q ss_pred cEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHH
Q 003054 59 REAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKAN 136 (852)
Q Consensus 59 ~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~ 136 (852)
++|+++.. +++|-....+.+.+++++.|.++..... ..+.......+..+...++|.||+...... ...++.+.
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l~ 79 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYS---DYSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQLLE 79 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEEC---TTCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcC---CCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHH
Confidence 46888874 4567788889999999999988764321 223444556778888889999888764322 24566677
Q ss_pred HcCC
Q 003054 137 EIGL 140 (852)
Q Consensus 137 ~~G~ 140 (852)
+.|.
T Consensus 80 ~~~i 83 (275)
T 3d8u_A 80 ASNT 83 (275)
T ss_dssp HHTC
T ss_pred hCCC
Confidence 7675
No 329
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=39.14 E-value=1.2e+02 Score=29.15 Aligned_cols=88 Identities=13% Similarity=0.012 Sum_probs=56.2
Q ss_pred cEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEE--EeChh----hHHHHH
Q 003054 59 REAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIL--HMLPS----LGSRIF 132 (852)
Q Consensus 59 ~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~--~~~~~----~~~~i~ 132 (852)
.+|.+.....+.-.-+...+...|+..|.+|.+--. +... ...+..+++.+||+|.+ .+... ....++
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~---~vp~---e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i 166 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGV---DVLN---ENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLM 166 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCS---SCCH---HHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCC---CCCH---HHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHH
Confidence 356555555554444456677789999999865421 1223 34556677789999999 65432 457888
Q ss_pred HHHHHcCCcccceEEEEcCc
Q 003054 133 EKANEIGLMNKGCVWIMTDG 152 (852)
Q Consensus 133 ~~a~~~G~~~~~~vwi~~~~ 152 (852)
+++++.|...+-.+|+++..
T Consensus 167 ~~l~~~~~~~~v~v~vGG~~ 186 (215)
T 3ezx_A 167 DRLNEEKLRDSVKCMFGGAP 186 (215)
T ss_dssp HHHHHTTCGGGSEEEEESSS
T ss_pred HHHHHcCCCCCCEEEEECCC
Confidence 89999987433346666544
No 330
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=39.03 E-value=2e+02 Score=26.82 Aligned_cols=69 Identities=13% Similarity=-0.031 Sum_probs=40.6
Q ss_pred eecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCCceEee-cc-cccccceEEEecCCCCchhhHHHHHHhc
Q 003054 606 VVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCSKYAMI-EP-KFKTAGFGFVFPLHSPLVHDVSKAILNV 681 (852)
Q Consensus 606 ~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~~~~v-~~-~~~~~~~~~~~~k~spl~~~in~~il~l 681 (852)
..+++.+...+++..|. ..+++.... +...+... .+..+ .+ ......+.++.+++......+...+..+
T Consensus 140 ~~~~~~~~~~~~v~~G~----Gia~lp~~~-~~~~l~~g--~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l 210 (218)
T 2qsx_A 140 VGFEHFYLACEAVRMEK----GLALLPDFM-AQFSILRG--DIQHIGNLKLHSGYGYYVVIPNFRLTSRKVALFHDWL 210 (218)
T ss_dssp BCCSSHHHHHHHHHTTC----CBEEEEHHH-HHHHHHTT--SEEEEEEEEEEEEEEEEEECCTTCTTCHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHhCC----CEEEecHHH-HHHHHHCC--CccccCccccCCCceEEEEeccccCCCHHHHHHHHHH
Confidence 45678899999999998 455555443 33333221 23222 22 1233567888888877666666555444
No 331
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=38.89 E-value=69 Score=33.97 Aligned_cols=84 Identities=7% Similarity=-0.078 Sum_probs=56.8
Q ss_pred HHHHHHHHcCC---cEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCC---ceEEEE
Q 003054 48 AITAIIKAFGW---REAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ---TRVFIL 121 (852)
Q Consensus 48 aia~~l~~~gw---~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~---~~viv~ 121 (852)
.+.++++.++. +++.+|....-... .+.+.+++.|.++.....+.++.+.+.+...+..+++.+ +|+||-
T Consensus 40 ~l~~~l~~~g~~~~~~~liVtd~~~~~~----~l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~~~~~~~~~~~D~IIa 115 (375)
T 3rf7_A 40 QLDTVLEQERTDANDFVVFLVDDVHQHK----PLAARVPNKAHDLVIYVNVDDEPTTVQVDELTAQVKAFNTKLPVSVVG 115 (375)
T ss_dssp GHHHHHHTTCCSTTCCEEEEEEGGGTTS----HHHHHSCCCTTSEEEEECCSSCCBHHHHHHHHHHHHHHCSSCCSEEEE
T ss_pred HHHHHHHHhcccCCCeEEEEECchhhhh----HHHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCCEEEE
Confidence 46677777763 77777774432222 466777777877655555666667778888888888777 999988
Q ss_pred EeChh--hHHHHHHHH
Q 003054 122 HMLPS--LGSRIFEKA 135 (852)
Q Consensus 122 ~~~~~--~~~~i~~~a 135 (852)
.+-+. |+.+++...
T Consensus 116 vGGGS~iD~AK~iA~~ 131 (375)
T 3rf7_A 116 LGGGSTMDLAKAVSLM 131 (375)
T ss_dssp EESHHHHHHHHHHHHH
T ss_pred eCCcHHHHHHHHHHHH
Confidence 87654 566666544
No 332
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=38.81 E-value=41 Score=34.68 Aligned_cols=79 Identities=10% Similarity=0.046 Sum_probs=55.4
Q ss_pred cEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCC--ceEEEEEeChhh-HHHHHH
Q 003054 59 REAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ--TRVFILHMLPSL-GSRIFE 133 (852)
Q Consensus 59 ~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~--~~viv~~~~~~~-~~~i~~ 133 (852)
++|+++.. ++.|.......+.+++++.|.++..... ..+.......+..+.+.+ +|.||+...... ....++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~---~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~~ 82 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTT---EGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVE 82 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEEC---TTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC---CCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHHH
Confidence 57888874 4567778889999999999988765421 222344556677777778 999988765443 346777
Q ss_pred HHHHcCC
Q 003054 134 KANEIGL 140 (852)
Q Consensus 134 ~a~~~G~ 140 (852)
++.+.|+
T Consensus 83 ~~~~~~i 89 (332)
T 2rjo_A 83 ACSKAGA 89 (332)
T ss_dssp HHHHHTC
T ss_pred HHHHCCC
Confidence 7877775
No 333
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=38.72 E-value=69 Score=32.79 Aligned_cols=80 Identities=11% Similarity=0.098 Sum_probs=54.7
Q ss_pred CcEEEEEEEe-CCcccccHHHHHHHHHhC-CceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhh-HHHHHHH
Q 003054 58 WREAVPIYVD-NQYGEEMIPSLTDALQAI-DTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSL-GSRIFEK 134 (852)
Q Consensus 58 w~~vaii~~d-~~~G~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~-~~~i~~~ 134 (852)
-.+|+++..+ +.|.......+.+++++. |.++..... ..+.......+..+.+.++|.||+...... ....+++
T Consensus 6 ~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~---~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~ 82 (325)
T 2x7x_A 6 HFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSA---GDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVEE 82 (325)
T ss_dssp CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHHH
T ss_pred CeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHH
Confidence 3578888743 446667788888899888 988765421 223444556677888889999998765443 3456777
Q ss_pred HHHcCC
Q 003054 135 ANEIGL 140 (852)
Q Consensus 135 a~~~G~ 140 (852)
+.+.|+
T Consensus 83 ~~~~~i 88 (325)
T 2x7x_A 83 AYQKGI 88 (325)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 777775
No 334
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=38.69 E-value=1.6e+02 Score=29.22 Aligned_cols=45 Identities=9% Similarity=-0.136 Sum_probs=30.7
Q ss_pred ChhHHHHHHhcCcccEEEeeeeeecCcceeeeccccccccceEEEEEcc
Q 003054 411 SYNDLVYQVFLGEFDAVVGDITIVFNRSNYVDFTLPYTESGVSMIVPIK 459 (852)
Q Consensus 411 s~~~li~~l~~g~~D~~~g~~~it~~r~~~vdft~p~~~~~~~~vv~~~ 459 (852)
+..++++.|.+|++|+++...... ...+. ..|+....++++++..
T Consensus 128 ~~~~~~~~l~~g~~D~~i~~~~~~---~~~l~-~~~l~~~~~~~v~~~~ 172 (303)
T 3isp_A 128 DQDHSARLLREGVAMGAVTTERNP---VPGCR-VHPLGEMRYLPVASRP 172 (303)
T ss_dssp CHHHHHHHHHTTSCSEEEESCCSC---CTTEE-EEEEEEEEEEEEECHH
T ss_pred ChHHHHHHHHcCcceEEEecCCCC---CCCeE-EEEccceeEEEEecch
Confidence 467899999999999987532211 12222 4667778888888754
No 335
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=38.53 E-value=1.1e+02 Score=30.35 Aligned_cols=86 Identities=8% Similarity=0.078 Sum_probs=63.1
Q ss_pred HHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeC---
Q 003054 48 AITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML--- 124 (852)
Q Consensus 48 aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~--- 124 (852)
.+|++.+ -|..-+.|+. |..|-.+..+.+.+.-+...+.|..+..+ .+ . -|+.+.+..++|+|++...
T Consensus 68 ~iA~~~~-~GA~aiSVLT-d~~~F~Gs~~~L~~vr~~v~lPvLrKDFi-id--~----yQI~eAr~~GADaILLI~a~L~ 138 (258)
T 4a29_A 68 EYAKFME-RYAVGLSITT-EEKYFNGSYETLRKIASSVSIPILMSDFI-VK--E----SQIDDAYNLGADTVLLIVKILT 138 (258)
T ss_dssp HHHHHHT-TTCSEEEEEC-CSTTTCCCHHHHHHHHTTCSSCEEEESCC-CS--H----HHHHHHHHHTCSEEEEEGGGSC
T ss_pred HHHHHHh-CCCeEEEEeC-CCCCCCCCHHHHHHHHHhcCCCEeecccc-cc--H----HHHHHHHHcCCCeeehHHhhcC
Confidence 3455554 4777777776 77788888999988877778887655433 22 2 3677888899999987754
Q ss_pred hhhHHHHHHHHHHcCCcc
Q 003054 125 PSLGSRIFEKANEIGLMN 142 (852)
Q Consensus 125 ~~~~~~i~~~a~~~G~~~ 142 (852)
..+...+.+.|+++||..
T Consensus 139 ~~~l~~l~~~A~~lGl~~ 156 (258)
T 4a29_A 139 ERELESLLEYARSYGMEP 156 (258)
T ss_dssp HHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHhHHH
Confidence 456899999999999944
No 336
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=37.65 E-value=42 Score=35.41 Aligned_cols=76 Identities=7% Similarity=0.104 Sum_probs=53.2
Q ss_pred CcEEEEEEEe----CCcccccHHHHHHHHHhCC--ceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHH
Q 003054 58 WREAVPIYVD----NQYGEEMIPSLTDALQAID--TRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRI 131 (852)
Q Consensus 58 w~~vaii~~d----~~~G~~~~~~l~~~l~~~g--~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i 131 (852)
-.+|++|+.+ ..|.....+.+.++.++.| +++.+.+..+ ...|+...|..+.+.+.|+||..+.. ....+
T Consensus 26 ~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~---~~~d~~~~l~~l~~~g~d~Ii~~g~~-~~~~~ 101 (356)
T 3s99_A 26 KLKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVA---EGADAERSIKRIARAGNKLIFTTSFG-YMDPT 101 (356)
T ss_dssp CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCC---TTHHHHHHHHHHHHTTCSEEEECSGG-GHHHH
T ss_pred CCEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCC---CHHHHHHHHHHHHHCCCCEEEECCHH-HHHHH
Confidence 3689999953 3577888888888888888 7766554432 24578889999999999988876533 33344
Q ss_pred HHHHHH
Q 003054 132 FEKANE 137 (852)
Q Consensus 132 ~~~a~~ 137 (852)
.+.|.+
T Consensus 102 ~~vA~~ 107 (356)
T 3s99_A 102 VKVAKK 107 (356)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 554543
No 337
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=37.64 E-value=60 Score=22.57 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 003054 726 GVAAILALIIFMAVFIHQHWNVL 748 (852)
Q Consensus 726 ~ig~~lsl~vf~~e~~~~~r~~~ 748 (852)
.+|+++.+++.++.++|.||++.
T Consensus 18 vVGvll~vi~~l~~~~~~RRR~~ 40 (44)
T 2jwa_A 18 VVGILLVVVLGVVFGILIKRRQQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHhheehhhh
Confidence 34444444455555566555543
No 338
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=37.47 E-value=2e+02 Score=29.08 Aligned_cols=66 Identities=9% Similarity=0.000 Sum_probs=42.5
Q ss_pred CcEEEEEE-EeCCcccccHHHHHHHHHhCCce----eeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeC
Q 003054 58 WREAVPIY-VDNQYGEEMIPSLTDALQAIDTR----VPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 124 (852)
Q Consensus 58 w~~vaii~-~d~~~G~~~~~~l~~~l~~~g~~----v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~ 124 (852)
-.||+|+- .+.+.=....+.|++.|++.|.. |.+... ....+......+++++.+.++|+|+..+.
T Consensus 8 ~~~igi~q~~~hp~ld~~~~G~~~~L~~~G~~~g~nv~~~~~-~a~gd~~~~~~~~~~l~~~~~DlIiai~t 78 (302)
T 3lkv_A 8 TAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYK-TAQGNPAIAVQIARQFVGENPDVLVGIAT 78 (302)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEE-ECTTCHHHHHHHHHHHHTTCCSEEEEESH
T ss_pred CceEEEEEeecChhHHHHHHHHHHHHHhhCcccCCcEEEEEE-eCCCCHHHHHHHHHHHHhcCCcEEEEcCC
Confidence 35788775 23332245567899999998742 333322 22334566778889999999999886543
No 339
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=36.89 E-value=51 Score=33.23 Aligned_cols=78 Identities=10% Similarity=-0.028 Sum_probs=54.5
Q ss_pred CcEEEEEEE------eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHH
Q 003054 58 WREAVPIYV------DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRI 131 (852)
Q Consensus 58 w~~vaii~~------d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i 131 (852)
-+.|+++.. ++.|-......+.+++++.|..+.....-. .......+..+.+.+.|.||+....... ..
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~ 80 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP----GEKYQSLIHLVETRRVDALIVAHTQPED-FR 80 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT----TCCCHHHHHHHHHTCCSEEEECSCCSSC-HH
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC----hhhHHHHHHHHHcCCCCEEEEeCCCCCh-HH
Confidence 367888886 456778889999999999999887654321 2233455666777899999887654322 56
Q ss_pred HHHHHHcCC
Q 003054 132 FEKANEIGL 140 (852)
Q Consensus 132 ~~~a~~~G~ 140 (852)
++.+.+.|+
T Consensus 81 ~~~l~~~~i 89 (294)
T 3qk7_A 81 LQYLQKQNF 89 (294)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhCCC
Confidence 677777776
No 340
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=36.83 E-value=26 Score=35.29 Aligned_cols=80 Identities=9% Similarity=-0.010 Sum_probs=56.9
Q ss_pred CCcEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHH
Q 003054 57 GWREAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEK 134 (852)
Q Consensus 57 gw~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~ 134 (852)
.-++|+++.. ++.|.....+.+.+++++.|.++..... ..+.......+..+.+.++|.||+..... ....++.
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~~ 82 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANT---AEDIVREREAVGQFFERRVDGLILAPSEG-EHDYLRT 82 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHHHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHHHH
Confidence 3467888884 3557788899999999999998765432 22345566778888889999999876543 3455666
Q ss_pred HHHcCC
Q 003054 135 ANEIGL 140 (852)
Q Consensus 135 a~~~G~ 140 (852)
+.+.|+
T Consensus 83 ~~~~~i 88 (291)
T 3egc_A 83 ELPKTF 88 (291)
T ss_dssp SSCTTS
T ss_pred hhccCC
Confidence 666665
No 341
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=36.72 E-value=55 Score=32.58 Aligned_cols=70 Identities=10% Similarity=0.031 Sum_probs=48.9
Q ss_pred HHHHHcCCcEEEEEEEe--CCcccccHHHHHHHHHhCCce-eeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEe
Q 003054 51 AIIKAFGWREAVPIYVD--NQYGEEMIPSLTDALQAIDTR-VPYRSVISPLATDDQIEKELYKLFTMQTRVFILHM 123 (852)
Q Consensus 51 ~~l~~~gw~~vaii~~d--~~~G~~~~~~l~~~l~~~g~~-v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~ 123 (852)
+-++.-.-+.|+++..+ +.|.....+.+.+++++.|.+ +... ....+.......+..+.+.++|.||+..
T Consensus 3 r~L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 3 LTLYQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISF---STNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp -----CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hhhhcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEE---eCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 33444455789999854 667888899999999999998 5432 2223345556678888889999999887
No 342
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=36.64 E-value=3.3e+02 Score=27.05 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=41.1
Q ss_pred HHHHHHH---HH-CCCccce--EEEecCCCCCCCCCChhHHHHHHhc-C-cccEEEeeeeeecCc---ceeeeccccccc
Q 003054 381 DVFKAVI---QE-LPYAVAY--DFVPYGQPDGSSSGSYNDLVYQVFL-G-EFDAVVGDITIVFNR---SNYVDFTLPYTE 449 (852)
Q Consensus 381 dl~~~ia---~~-l~~~~~~--~~~~~~~~~g~~ngs~~~li~~l~~-g-~~D~~~g~~~it~~r---~~~vdft~p~~~ 449 (852)
++++.+. ++ .|.++++ .+ ++-.+++.+|.+ | .+|+.+..-....++ ....+...||..
T Consensus 21 ~~~~~F~~~~~~~~gi~V~~~~~~-----------~~s~~l~~~i~~~g~~~Dv~~~~~~~~~~~l~~~g~~~~~~~~~~ 89 (296)
T 3cg1_A 21 EVEKEFSEYAERNLGIKVSFQDEA-----------SGSVMAVRKVTDLGRKADVIGVADYTLIPQLLIPNYTDFYVLFAT 89 (296)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEEE-----------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEE
T ss_pred HHHHHHHHHHHhCCCceEEEEeec-----------CCHHHHHHHHHhCCCCCCEEEECChhHHHHHhcCCCCCcceeccc
Confidence 5777776 66 6865555 33 134678888887 5 599987532111111 112245677888
Q ss_pred cceEEEEEcc
Q 003054 450 SGVSMIVPIK 459 (852)
Q Consensus 450 ~~~~~vv~~~ 459 (852)
..++++++..
T Consensus 90 ~~~vi~~~~~ 99 (296)
T 3cg1_A 90 NEIVIAFTDK 99 (296)
T ss_dssp CCEEEEECTT
T ss_pred ccEEEEEcCC
Confidence 8888888754
No 343
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=36.62 E-value=65 Score=29.94 Aligned_cols=62 Identities=16% Similarity=0.091 Sum_probs=39.8
Q ss_pred cEEEEEEEeCC--cc---cccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEe
Q 003054 59 REAVPIYVDNQ--YG---EEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHM 123 (852)
Q Consensus 59 ~~vaii~~d~~--~G---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~ 123 (852)
-++++|...|+ .| ......+.+.|++.|+++.....++. +.+.+...|.++.+ ..|+||+.+
T Consensus 4 ~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~D--d~~~I~~~l~~a~~-~~DlVittG 70 (172)
T 3kbq_A 4 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMD--DLDEIGWAFRVALE-VSDLVVSSG 70 (172)
T ss_dssp CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECS--CHHHHHHHHHHHHH-HCSEEEEES
T ss_pred CEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCC--CHHHHHHHHHHHHh-cCCEEEEcC
Confidence 36777775544 13 23456677788888888877776653 35667777766553 367777764
No 344
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=36.36 E-value=30 Score=36.68 Aligned_cols=95 Identities=8% Similarity=-0.047 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChh
Q 003054 47 GAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS 126 (852)
Q Consensus 47 ~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~ 126 (852)
+.+.++++.+|.+++.+++....+| ..+.+.+.|+ . .+.+. .+.++.+.+.+...+..+++.++|+||-.+-+.
T Consensus 26 ~~l~~~l~~~g~~rvliVtd~~~~~--~~~~v~~~L~--~-~~~f~-~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 99 (364)
T 3iv7_A 26 AFLKQEVERRGSAKVMVIAGEREMS--IAHKVASEIE--V-AIWHD-EVVMHVPIEVAERARAVATDNEIDLLVCVGGGS 99 (364)
T ss_dssp HHHHHHHHHHTCSSEEEECCGGGHH--HHHHHTTTSC--C-SEEEC-CCCTTCBHHHHHHHHHHHHHTTCCEEEEEESHH
T ss_pred HHHHHHHHHcCCCEEEEEECCCHHH--HHHHHHHHcC--C-CEEEc-ceecCCCHHHHHHHHHHHHhcCCCEEEEeCCcH
Confidence 4567888889999998888544322 2233333333 1 12222 334455677888888889999999998887654
Q ss_pred --hHHHHHHHHHHcCCcccceEEEEcCc
Q 003054 127 --LGSRIFEKANEIGLMNKGCVWIMTDG 152 (852)
Q Consensus 127 --~~~~i~~~a~~~G~~~~~~vwi~~~~ 152 (852)
|+.+++... .|+ .++-|-|..
T Consensus 100 ~iD~aK~iA~~--~~~---P~i~IPTTa 122 (364)
T 3iv7_A 100 TIGLAKAIAMT--TAL---PIVAIPTTY 122 (364)
T ss_dssp HHHHHHHHHHH--HCC---CEEEEECSS
T ss_pred HHHHHHHHHhc--cCC---CEEEEcCCc
Confidence 556665442 332 344555544
No 345
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=36.25 E-value=1.8e+02 Score=26.39 Aligned_cols=80 Identities=13% Similarity=0.119 Sum_probs=47.8
Q ss_pred cEEEEEEEeCCcc------cccHHHHHHHHHhCCceeeeee-ecCCCCChHHHHHHHHHhhc-CCceEEEEEeChhhH--
Q 003054 59 REAVPIYVDNQYG------EEMIPSLTDALQAIDTRVPYRS-VISPLATDDQIEKELYKLFT-MQTRVFILHMLPSLG-- 128 (852)
Q Consensus 59 ~~vaii~~d~~~G------~~~~~~l~~~l~~~g~~v~~~~-~~~~~~~~~d~~~~l~~l~~-~~~~viv~~~~~~~~-- 128 (852)
++|.++.+.-..| .+....+.+.|.+.|..+.... .+ .+.+..+....+.+... .+||+|++..-..+.
T Consensus 3 ~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~-~G~~~~~~~~~~~~~~~~~~pd~vvi~~G~ND~~~ 81 (185)
T 3hp4_A 3 NTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASI-SGETSGGALRRLDALLEQYEPTHVLIELGANDGLR 81 (185)
T ss_dssp EEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCC-TTCCHHHHHHHHHHHHHHHCCSEEEEECCHHHHHT
T ss_pred CeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCc-CCccHHHHHHHHHHHHhhcCCCEEEEEeecccCCC
Confidence 4666666443444 3556777888887765443322 22 23445566666655443 489999998776653
Q ss_pred -----------HHHHHHHHHcC
Q 003054 129 -----------SRIFEKANEIG 139 (852)
Q Consensus 129 -----------~~i~~~a~~~G 139 (852)
..+++.+++.|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~ 103 (185)
T 3hp4_A 82 GFPVKKMQTNLTALVKKSQAAN 103 (185)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHHHHHcC
Confidence 45666666654
No 346
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=36.16 E-value=48 Score=23.08 Aligned_cols=9 Identities=0% Similarity=0.006 Sum_probs=3.6
Q ss_pred HHHHHhhcc
Q 003054 739 VFIHQHWNV 747 (852)
Q Consensus 739 e~~~~~r~~ 747 (852)
.+++++|++
T Consensus 31 ~~~~RRRr~ 39 (44)
T 2l2t_A 31 AVYVRRKSI 39 (44)
T ss_dssp HHHHHTTCS
T ss_pred HHHhhhhhh
Confidence 333444433
No 347
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=36.13 E-value=61 Score=29.52 Aligned_cols=86 Identities=10% Similarity=0.085 Sum_probs=48.3
Q ss_pred EEEEEEEeCCcc--cccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh--hhH--HHHHH
Q 003054 60 EAVPIYVDNQYG--EEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP--SLG--SRIFE 133 (852)
Q Consensus 60 ~vaii~~d~~~G--~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~--~~~--~~i~~ 133 (852)
++.|+| .+.+| +..++.+.+.+++.|+++.... + . +.+....+.++. +.|.|++.+.. ... ..++.
T Consensus 2 kv~IvY-~S~tGnT~~~A~~ia~~l~~~g~~v~~~~-~--~--~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~fl~ 73 (161)
T 3hly_A 2 SVLIGY-LSDYGYSDRLSQAIGRGLVKTGVAVEMVD-L--R--AVDPQELIEAVS--SARGIVLGTPPSQPSEAVATALS 73 (161)
T ss_dssp CEEEEE-CTTSTTHHHHHHHHHHHHHHTTCCEEEEE-T--T--TCCHHHHHHHHH--HCSEEEEECCBSSCCHHHHHHHH
T ss_pred EEEEEE-ECCChHHHHHHHHHHHHHHhCCCeEEEEE-C--C--CCCHHHHHHHHH--hCCEEEEEcCCcCCchhHHHHHH
Confidence 467788 44455 5677888888888887754322 1 1 223333444443 45667666442 111 46777
Q ss_pred HHHHcCCcccceEEEEcCcc
Q 003054 134 KANEIGLMNKGCVWIMTDGM 153 (852)
Q Consensus 134 ~a~~~G~~~~~~vwi~~~~~ 153 (852)
......+.++....+++.+|
T Consensus 74 ~l~~~~l~gk~v~~fgs~g~ 93 (161)
T 3hly_A 74 TIFAAAHNKQAIGLFDSYGG 93 (161)
T ss_dssp HHHHHCCTTSEEEEECCCCS
T ss_pred HHHhhhhCCCEEEEEEcCCC
Confidence 76665555554455555544
No 348
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=35.80 E-value=78 Score=27.63 Aligned_cols=82 Identities=13% Similarity=0.101 Sum_probs=0.0
Q ss_pred EEEEE-EeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeC-------hh-hHHHH
Q 003054 61 AVPIY-VDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML-------PS-LGSRI 131 (852)
Q Consensus 61 vaii~-~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~-------~~-~~~~i 131 (852)
|.|+| +.+...+..++.+.+.+++.|.++.....-... ..++ .+.|.|++.+. ++ ....+
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~--~~~l---------~~~d~iiig~pty~~g~~p~~~~~~f 69 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVN--IDEL---------LNEDILILGCSAMTDEVLEESEFEPF 69 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCC--HHHH---------TTCSEEEEEECCBTTTBCCTTTHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCC--HHHH---------hhCCEEEEEcCccCCCCCChHHHHHH
Q ss_pred HHHHHHcCCcccceEEEEcCccc
Q 003054 132 FEKANEIGLMNKGCVWIMTDGMT 154 (852)
Q Consensus 132 ~~~a~~~G~~~~~~vwi~~~~~~ 154 (852)
+++.... +..+.+..+++.++.
T Consensus 70 l~~l~~~-l~~k~~~~f~t~g~~ 91 (138)
T 5nul_A 70 IEEISTK-ISGKKVALFGSYGWG 91 (138)
T ss_dssp HHHHGGG-CTTCEEEEEEEESSS
T ss_pred HHHHHhh-cCCCEEEEEEecCCC
No 349
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=35.64 E-value=57 Score=32.71 Aligned_cols=80 Identities=11% Similarity=0.075 Sum_probs=53.2
Q ss_pred CCcEEEEEEEe--C--CcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHH
Q 003054 57 GWREAVPIYVD--N--QYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIF 132 (852)
Q Consensus 57 gw~~vaii~~d--~--~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~ 132 (852)
.-+.|+++..+ + .|.....+.+.+++++.|..+..... ..+.......+..+.+.++|.||+...... ...+
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~ 82 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPH---IHAKDSMVPIRYILETGSADGVIISKIEPN-DPRV 82 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCB---SSGGGTTHHHHHHHHHTCCSEEEEESCCTT-CHHH
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecC---CcchhHHHHHHHHHHcCCccEEEEecCCCC-cHHH
Confidence 44678888854 3 67888899999999999988765422 111223344445566789999988754322 2456
Q ss_pred HHHHHcCC
Q 003054 133 EKANEIGL 140 (852)
Q Consensus 133 ~~a~~~G~ 140 (852)
+.+.+.|+
T Consensus 83 ~~l~~~~i 90 (288)
T 3gv0_A 83 RFMTERNM 90 (288)
T ss_dssp HHHHHTTC
T ss_pred HHHhhCCC
Confidence 77777776
No 350
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=35.47 E-value=82 Score=26.66 Aligned_cols=59 Identities=14% Similarity=0.077 Sum_probs=40.4
Q ss_pred ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh--hhHHHHHHHHHHcCC
Q 003054 73 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP--SLGSRIFEKANEIGL 140 (852)
Q Consensus 73 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~--~~~~~i~~~a~~~G~ 140 (852)
.....+.+.|++.|..|... . +....+..+++..+|+|++.... .++..+++++++...
T Consensus 17 ~~~~~l~~~L~~~g~~v~~~------~---~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~ 77 (132)
T 3lte_A 17 AMAAAIERVLKRDHWQVEIA------H---NGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKV 77 (132)
T ss_dssp HHHHHHHHHHHHTTCEEEEE------S---SHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHCCcEEEEe------C---CHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCc
Confidence 34667778888888776421 1 13345566677889999998654 357888888887653
No 351
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=35.14 E-value=72 Score=30.59 Aligned_cols=85 Identities=9% Similarity=0.028 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCcEEEEEEEeCC--cccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeC
Q 003054 47 GAITAIIKAFGWREAVPIYVDNQ--YGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 124 (852)
Q Consensus 47 ~aia~~l~~~gw~~vaii~~d~~--~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~ 124 (852)
..+.+++++.+-++|++|-.-.. -..+..+.+.+++++.|.++....... .+.+|+...|. ++|+|++.+
T Consensus 16 ~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~--~~~~~~~~~l~-----~ad~I~l~G- 87 (206)
T 3l4e_A 16 PLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT--ESLGEITTKLR-----KNDFIYVTG- 87 (206)
T ss_dssp HHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT--SCHHHHHHHHH-----HSSEEEECC-
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC--CChHHHHHHHH-----hCCEEEECC-
Confidence 34444554454588888851111 112467888999999999865432211 23445544443 467888876
Q ss_pred hhhHHHHHHHHHHcCC
Q 003054 125 PSLGSRIFEKANEIGL 140 (852)
Q Consensus 125 ~~~~~~i~~~a~~~G~ 140 (852)
.....+++.+++.|+
T Consensus 88 -G~~~~l~~~L~~~gl 102 (206)
T 3l4e_A 88 -GNTFFLLQELKRTGA 102 (206)
T ss_dssp -SCHHHHHHHHHHHTH
T ss_pred -CCHHHHHHHHHHCCh
Confidence 233355555555555
No 352
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=35.06 E-value=30 Score=34.45 Aligned_cols=87 Identities=11% Similarity=0.080 Sum_probs=53.0
Q ss_pred chhHHHHHHHHHH-----HcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCC---CCChHHHHHHHHHhhc
Q 003054 42 DSSQAGAITAIIK-----AFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISP---LATDDQIEKELYKLFT 113 (852)
Q Consensus 42 d~~~~~aia~~l~-----~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~---~~~~~d~~~~l~~l~~ 113 (852)
+...++.+++.+. ...-++|.++. |....+.+.+.|++.|.+|.....|.. .....++ ...+..
T Consensus 112 ~~~~~e~L~~~l~~~~~~~~~~~~vL~~r-----g~~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~---~~~l~~ 183 (254)
T 4es6_A 112 QGDDSEALLALPAFQDSLRVHDPKVLIMR-----GEGGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGEL---LARVRA 183 (254)
T ss_dssp SCCSHHHHHTCHHHHHHTCSSSCEEEEEE-----CSSCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHH---HHHHHH
T ss_pred CCCCHHHHHHhHhhcccccCCCCEEEEEc-----CCccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHH---HHHHHh
Confidence 3445677887764 33447776655 334556788899999998765554432 1122233 233445
Q ss_pred CCceEEEEEeChhhHHHHHHHHHH
Q 003054 114 MQTRVFILHMLPSLGSRIFEKANE 137 (852)
Q Consensus 114 ~~~~viv~~~~~~~~~~i~~~a~~ 137 (852)
.+.|+|+ .+++..+..+++.+.+
T Consensus 184 ~~~d~v~-ftS~s~v~~~~~~~~~ 206 (254)
T 4es6_A 184 ERLNGLV-VSSGQGLQNLYQLAAA 206 (254)
T ss_dssp TTCCEEE-CCSHHHHHHHHHHHGG
T ss_pred CCCCEEE-EcCHHHHHHHHHHhhH
Confidence 6677755 5677788888776643
No 353
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=34.47 E-value=87 Score=27.56 Aligned_cols=71 Identities=11% Similarity=0.023 Sum_probs=45.3
Q ss_pred ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChh--hHHHHHHHHHHcCCcccceEEEEc
Q 003054 73 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS--LGSRIFEKANEIGLMNKGCVWIMT 150 (852)
Q Consensus 73 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~--~~~~i~~~a~~~G~~~~~~vwi~~ 150 (852)
.....++..|++.|.+++... .+-...+..+++..+|+|++...-+ ++..++++.++..-...-.+.+.|
T Consensus 23 ~~r~~l~~~L~~~G~~~v~~a--------~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lT 94 (134)
T 3to5_A 23 TMRRIVKNLLRDLGFNNTQEA--------DDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMIT 94 (134)
T ss_dssp HHHHHHHHHHHHTTCCCEEEE--------SSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEE
T ss_pred HHHHHHHHHHHHcCCcEEEEE--------CCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEE
Confidence 456777888999997644321 1123456667778899999986544 678889988875432222244444
Q ss_pred C
Q 003054 151 D 151 (852)
Q Consensus 151 ~ 151 (852)
.
T Consensus 95 a 95 (134)
T 3to5_A 95 A 95 (134)
T ss_dssp S
T ss_pred C
Confidence 4
No 354
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=34.42 E-value=84 Score=26.42 Aligned_cols=57 Identities=9% Similarity=0.139 Sum_probs=40.3
Q ss_pred ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeC--hhhHHHHHHHHHHc
Q 003054 73 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML--PSLGSRIFEKANEI 138 (852)
Q Consensus 73 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~--~~~~~~i~~~a~~~ 138 (852)
...+.+.+.|++.|.+|... . +....+..+++..+|+|++... ..++..++++.++.
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~---~------~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 72 (127)
T 3i42_A 14 AAAETFKELLEMLGFQADYV---M------SGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRAL 72 (127)
T ss_dssp HHHHHHHHHHHHTTEEEEEE---S------SHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCEEEE---C------CHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 35677888888888765421 1 2344566667788999999865 34678899999887
No 355
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=34.41 E-value=55 Score=33.25 Aligned_cols=64 Identities=9% Similarity=0.128 Sum_probs=47.6
Q ss_pred cEEEEEEEe---C-CcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh
Q 003054 59 REAVPIYVD---N-QYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP 125 (852)
Q Consensus 59 ~~vaii~~d---~-~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~ 125 (852)
.+|++|+.+ + .|-....+.+.+++++.|.++...... .+..+....+..+.+.+.|.||+.+..
T Consensus 6 ~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~l~~l~~~~vdgIi~~~~~ 73 (296)
T 2hqb_A 6 GMVGLLVEDTIDDQGWNRKAYEGLLNIHSNLDVDVVLEEGV---NSEQKAHRRIKELVDGGVNLIFGHGHA 73 (296)
T ss_dssp CEEEEECCCC----CCTHHHHHHHHHHHHHSCCEEEEECCC---CSHHHHHHHHHHHHHTTCCEEEECSTH
T ss_pred cEEEEEECCCCCCCcHHHHHHHHHHHHHHHhCCeEEEEeCC---CCHHHHHHHHHHHHHCCCCEEEEcCHh
Confidence 578888842 4 788888999999999999987654321 234567778888888999999987643
No 356
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=34.34 E-value=22 Score=35.80 Aligned_cols=81 Identities=7% Similarity=0.029 Sum_probs=54.1
Q ss_pred cEEEEEEE--e--CCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhh-HHHHHH
Q 003054 59 REAVPIYV--D--NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSL-GSRIFE 133 (852)
Q Consensus 59 ~~vaii~~--d--~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~-~~~i~~ 133 (852)
++|+++.. + ++|.....+.+.+++++.|.++.....- ...+.......+..+.+.++|.|++...... ....++
T Consensus 6 ~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~ 84 (289)
T 3brs_A 6 YYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPE-KEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAK 84 (289)
T ss_dssp CEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCS-STTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHHHT
T ss_pred cEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCC-CCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHH
Confidence 57888874 3 6688888999999999999887543210 0123344556777888889999988765433 235566
Q ss_pred HHHHcCC
Q 003054 134 KANEIGL 140 (852)
Q Consensus 134 ~a~~~G~ 140 (852)
++.+.|.
T Consensus 85 ~~~~~~i 91 (289)
T 3brs_A 85 EIKDAGI 91 (289)
T ss_dssp TTGGGTC
T ss_pred HHHHCCC
Confidence 6666664
No 357
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=33.99 E-value=92 Score=32.34 Aligned_cols=89 Identities=12% Similarity=0.159 Sum_probs=66.9
Q ss_pred cCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceE
Q 003054 39 SLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRV 118 (852)
Q Consensus 39 ~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~v 118 (852)
.|+....++.|.++++..+.++|.|.. |.+. ..+.|+++|.+.+++|+. +.++ .+++....-..+|+
T Consensus 261 lPSle~I~rqIk~~vk~~~lksVFIAT-Da~~---~~~ELk~~L~~~~v~vv~---~~pe------~a~ID~~I~~~A~~ 327 (362)
T 3zy2_A 261 SPSKQQILEQIVEKVGSIGAKSVFVAS-DKDH---MIDEINEALKPYEIEAHR---QEPD------DMYTSLAIMGRADL 327 (362)
T ss_dssp SCCHHHHHHHHHHHHHHHTCSEEEEEE-SSCC---CHHHHHHHHGGGTCCEEC---CSSC------CHHHHHHHHHHSSE
T ss_pred CCCHHHHHHHHHHHHHhcCCcEEEEec-CCHH---HHHHHHHHhhccCceEEE---eCCc------hhHHHHHHHHhCCE
Confidence 578888888999999999999998777 4432 578999999887877643 2222 44566666678899
Q ss_pred EEEEeChhhHHHHHHHHHHcCC
Q 003054 119 FILHMLPSLGSRIFEKANEIGL 140 (852)
Q Consensus 119 iv~~~~~~~~~~i~~~a~~~G~ 140 (852)
+|-.+...-...+.++=.-+|+
T Consensus 328 FIGN~~SSFSa~I~rERdi~G~ 349 (362)
T 3zy2_A 328 FVGNCVSTFSHIVKRERDHAGQ 349 (362)
T ss_dssp EEECTTCHHHHHHHHHHHHSSS
T ss_pred eecCccccccHHHHHHHHhcCC
Confidence 9988888888888777666773
No 358
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=33.90 E-value=42 Score=33.71 Aligned_cols=78 Identities=10% Similarity=-0.067 Sum_probs=51.7
Q ss_pred cEEEEEEE------eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHH
Q 003054 59 REAVPIYV------DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIF 132 (852)
Q Consensus 59 ~~vaii~~------d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~ 132 (852)
++|+++.. +++|.....+.+.+++++.|.++.... ...+.......+..+.+.++|.||+....... ..+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~ 80 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFP---FSEDRSQIDIYRDLIRSGNVDGFVLSSINYND-PRV 80 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECC---CCSSTTCCHHHHHHHHTTCCSEEEECSCCTTC-HHH
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEe---CCCchHHHHHHHHHHHcCCCCEEEEeecCCCc-HHH
Confidence 46777764 456778888999999999998875432 11122233456777788899999887643222 456
Q ss_pred HHHHHcCC
Q 003054 133 EKANEIGL 140 (852)
Q Consensus 133 ~~a~~~G~ 140 (852)
+.+.+.|+
T Consensus 81 ~~l~~~~i 88 (287)
T 3bbl_A 81 QFLLKQKF 88 (287)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 66777775
No 359
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=33.77 E-value=50 Score=34.78 Aligned_cols=110 Identities=11% Similarity=0.001 Sum_probs=61.1
Q ss_pred CCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeee--eeecCCCCChHHHHHHHH
Q 003054 32 SPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPY--RSVISPLATDDQIEKELY 109 (852)
Q Consensus 32 ~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~--~~~~~~~~~~~d~~~~l~ 109 (852)
.||-+...+.... .+.++++.+ +++.+++....+.. ..+.+.+.| +.| ++.. .....++.+.+.+...+.
T Consensus 10 ~~~~i~~G~g~l~---~l~~~l~~~--~~~liVtd~~~~~~-~~~~v~~~L-~~g-~~~~~~~~~~e~~p~~~~v~~~~~ 81 (354)
T 1xah_A 10 NNYPIYVEHGAIK---YIGTYLNQF--DQSFLLIDEYVNQY-FANKFDDIL-SYE-NVHKVIIPAGEKTKTFEQYQETLE 81 (354)
T ss_dssp CCCEEEEETTGGG---HHHHHHTTC--SCEEEEEEHHHHHH-HHHHHC--------CEEEEEECSGGGGCSHHHHHHHHH
T ss_pred CCccEEEcCChHH---HHHHHHHhc--CeEEEEECCcHHHH-HHHHHHHHH-hcC-CeEEEEECCCCCCCCHHHHHHHHH
Confidence 4555555554332 244555555 88988885543333 566677777 667 3322 112223345677888888
Q ss_pred HhhcCCc---eEEEEEeCh--hhHHHHHHHHHHcCCcccceEEEEcCc
Q 003054 110 KLFTMQT---RVFILHMLP--SLGSRIFEKANEIGLMNKGCVWIMTDG 152 (852)
Q Consensus 110 ~l~~~~~---~viv~~~~~--~~~~~i~~~a~~~G~~~~~~vwi~~~~ 152 (852)
.+++.++ |+||-.+.+ -|+..++......|+ .++-|-|..
T Consensus 82 ~~~~~~~~r~d~iIavGGGsv~D~ak~vA~~~~rgi---p~i~IPTT~ 126 (354)
T 1xah_A 82 YILSHHVTRNTAIIAVGGGATGDFAGFVAATLLRGV---HFIQVPTTI 126 (354)
T ss_dssp HHHTTCCCTTCEEEEEESHHHHHHHHHHHHHBTTCC---EEEEEECST
T ss_pred HHHHcCCCCCceEEEECChHHHHHHHHHHHHhccCC---CEEEECCcc
Confidence 8888888 888876654 467777766555553 345555543
No 360
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=33.61 E-value=51 Score=24.92 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 003054 723 LIAGVAAILALIIFMAVF 740 (852)
Q Consensus 723 ~il~ig~~lsl~vf~~e~ 740 (852)
+++|.+.++.++.-++-+
T Consensus 12 ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 344444444443334444
No 361
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=33.26 E-value=24 Score=34.81 Aligned_cols=74 Identities=9% Similarity=-0.010 Sum_probs=49.0
Q ss_pred EEeeHHHHHHHHHHCCCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEeeeeeecCcc---eeeeccccccccce
Q 003054 376 TGYCVDVFKAVIQELPYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFNRS---NYVDFTLPYTESGV 452 (852)
Q Consensus 376 ~G~~~dl~~~ia~~l~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~~~it~~r~---~~vdft~p~~~~~~ 452 (852)
.|+.-+|+..+.++.|.++.+.+ . .-..++.++.+|.+|+.+..-....+.. ....-..|+....+
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~--~---------gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~l 86 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVKVDVIA--V---------GTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDF 86 (236)
T ss_dssp HCHHHHHHHHHHHHHTCEEEEEE--E---------CHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCE
T ss_pred hHHHHHHHHHHHHHhCCeEEEEE--c---------ChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcE
Confidence 36667888889888776544443 2 3457899999999999876433222111 01112468888999
Q ss_pred EEEEEccC
Q 003054 453 SMIVPIKD 460 (852)
Q Consensus 453 ~~vv~~~~ 460 (852)
++++|...
T Consensus 87 VlV~P~~~ 94 (236)
T 3lr1_A 87 VIVGPKND 94 (236)
T ss_dssp EEEECTTC
T ss_pred EEEEECCC
Confidence 99999764
No 362
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=33.13 E-value=59 Score=32.47 Aligned_cols=64 Identities=6% Similarity=0.003 Sum_probs=46.8
Q ss_pred cEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh
Q 003054 59 REAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP 125 (852)
Q Consensus 59 ~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~ 125 (852)
++|+++.. +++|.....+.+.+++++.|.++.... ...+.......+..+.+.++|.||+....
T Consensus 8 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 8 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN---AWNNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEc---CCCChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 57888874 456778888999999999998876532 12234455666788888899999887643
No 363
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=33.07 E-value=1e+02 Score=30.66 Aligned_cols=78 Identities=8% Similarity=-0.092 Sum_probs=53.4
Q ss_pred CcEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHH
Q 003054 58 WREAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKA 135 (852)
Q Consensus 58 w~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a 135 (852)
-++|+++.. +++|.....+.+.+++++.|.++.... ...+.......+..+.+.++|.||+....... ..++.+
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~l 83 (285)
T 3c3k_A 8 TGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCN---TESDLARSRSCLTLLSGKMVDGVITMDALSEL-PELQNI 83 (285)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE---CTTCHHHHHHHTHHHHTTCCSEEEECCCGGGH-HHHHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe---CCCCHHHHHHHHHHHHhCCCCEEEEeCCCCCh-HHHHHH
Confidence 457888884 466788889999999999999876542 12223444566778888899999987653322 345555
Q ss_pred HHcCC
Q 003054 136 NEIGL 140 (852)
Q Consensus 136 ~~~G~ 140 (852)
. .|+
T Consensus 84 ~-~~i 87 (285)
T 3c3k_A 84 I-GAF 87 (285)
T ss_dssp H-TTS
T ss_pred h-cCC
Confidence 5 665
No 364
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural genomics, PSI-2, protein structure initiative; HET: PGE; 1.86A {Staphylococcus aureus subsp} SCOP: c.94.1.0
Probab=32.81 E-value=1.9e+02 Score=29.10 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=40.9
Q ss_pred CcCCHHHHHhcC--CeEEEEe------CchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHH
Q 003054 569 TITDVKMLIKRG--DNVGYQK------GSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYM 637 (852)
Q Consensus 569 ~i~sl~dL~~~~--~~vg~~~------~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~ 637 (852)
.|+|++||.+.. ..+|+.. |.-...+.+.++++...+...+ .-...+++.+|+ .+++....+..
T Consensus 129 ~l~sisDL~~~~~~~~~g~~~ef~~r~gdG~~~l~~~Ygl~~~~~~~~d-~g~~~~A~~~~~----~~v~~~wsp~~ 200 (282)
T 3o66_A 129 HLETVSDLAKHSKDLRLGMDSSWMNRKGDGYEGFKKEYGFDFGTVRPMQ-IGLVYDALNTEK----LDVALGYSTDG 200 (282)
T ss_dssp TCSBSGGGTTTGGGCEEEEEGGGCC--CCSHHHHHHHHCCCCSEEEEEC-GGGHHHHHHTTS----CSEEEEETTCH
T ss_pred CCCCHHHHHhcccceEEecCcccccCchhHHHHHHHHcCCCCccccccC-HHHHHHHHHcCC----CeEEEEeCCCc
Confidence 389999998653 3778765 3434455556666433344443 336789999998 77777665543
No 365
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=32.47 E-value=89 Score=27.59 Aligned_cols=58 Identities=10% Similarity=-0.014 Sum_probs=41.3
Q ss_pred ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh--hhHHHHHHHHHHcC
Q 003054 73 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP--SLGSRIFEKANEIG 139 (852)
Q Consensus 73 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~--~~~~~i~~~a~~~G 139 (852)
.....+.+.|++.|..|... .+....+..++...+|+|++.... .++..+++++++..
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~---------~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 18 TQAEHLKHILEETGYQTEHV---------RNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQP 77 (154)
T ss_dssp HHHHHHHHHHHTTTCEEEEE---------SSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHCCCEEEEe---------CCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 45677888888888765321 123456667778899999998653 45788888888864
No 366
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=31.69 E-value=84 Score=27.03 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=39.4
Q ss_pred ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh--hhHHHHHHHHHHcC
Q 003054 73 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP--SLGSRIFEKANEIG 139 (852)
Q Consensus 73 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~--~~~~~i~~~a~~~G 139 (852)
.....+...|++.|.+|.. .. +....+..+....+|+|++.... .++..++++.++..
T Consensus 15 ~~~~~l~~~L~~~g~~v~~---~~------~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~ 74 (136)
T 3t6k_A 15 TVAEMLELVLRGAGYEVRR---AA------SGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHP 74 (136)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES------SHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHCCCEEEE---eC------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCC
Confidence 3566777888888877642 11 13345566677889999998654 35788888888754
No 367
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=31.65 E-value=97 Score=29.21 Aligned_cols=68 Identities=9% Similarity=0.049 Sum_probs=46.9
Q ss_pred HcCCcEEEEEEEeCCc--c---cccHHHHHHHHHh---CCceeeeeeecCCCCChHHHHHHHHHhhc-CCceEEEEEeC
Q 003054 55 AFGWREAVPIYVDNQY--G---EEMIPSLTDALQA---IDTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFILHML 124 (852)
Q Consensus 55 ~~gw~~vaii~~d~~~--G---~~~~~~l~~~l~~---~g~~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~viv~~~~ 124 (852)
-+.--+|+||...|+- | ......+.+.|++ .|.++.....++. +.+++...|.+..+ .++|+||+.+-
T Consensus 11 v~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~D--d~~~I~~al~~a~~~~~~DlVIttGG 87 (189)
T 1jlj_A 11 HDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPD--EIEEIKETLIDWCDEKELNLILTTGG 87 (189)
T ss_dssp --CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred ccCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCC--CHHHHHHHHHHHhhcCCCCEEEEcCC
Confidence 3444688888866552 2 2334677888887 7999888777763 36778888887764 37899998864
No 368
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=31.48 E-value=72 Score=31.93 Aligned_cols=81 Identities=12% Similarity=0.039 Sum_probs=53.9
Q ss_pred cEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChh-hHHHHHHHH
Q 003054 59 REAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS-LGSRIFEKA 135 (852)
Q Consensus 59 ~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~-~~~~i~~~a 135 (852)
+.|+++.. +++|-....+.+.+++++.|.++..... ....+...-...+..+...++|.|++..... .....++++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFAS-PSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARA 80 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEEC-SSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 46777773 4667788889999999999988765321 0112233445567777888999998875433 223456777
Q ss_pred HHcCC
Q 003054 136 NEIGL 140 (852)
Q Consensus 136 ~~~G~ 140 (852)
.+.|+
T Consensus 81 ~~~~i 85 (288)
T 1gud_A 81 WKKGI 85 (288)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77775
No 369
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=31.45 E-value=1.1e+02 Score=30.75 Aligned_cols=81 Identities=14% Similarity=0.042 Sum_probs=57.0
Q ss_pred CeEEE--EeCchHHHHHHhcCCCCcc--eeecCCHhHHHHHhhcccccCceeEEEech---------hHHHHHHhhcCCc
Q 003054 581 DNVGY--QKGSFVLGILKQLGFDERK--LVVYNSPEDCHELFQKGSVNGGIAAAFDEI---------PYMKLLIGQYCSK 647 (852)
Q Consensus 581 ~~vg~--~~~s~~~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~---------~~~~~~~~~~~~~ 647 (852)
.+|++ ..|+|.+.-..+. ++... ++++.+.++.++++.+|+ ++..+... ..++.+... .
T Consensus 4 ~~iaylGp~Gtfs~~Aa~~~-f~~~~~~~~~~~s~~~v~~aV~~g~----~d~gVvPiENS~~G~V~~t~DlL~~~---~ 75 (267)
T 2qmw_A 4 MQLYYLGPKGTFSYLACRQY-FSENEATFQPKSNLFEVIKAVADDD----TSIGVVPIENSIEGTINIVADALAQQ---D 75 (267)
T ss_dssp CEEEEECSTTSHHHHHHHHH-CCTTSSEEEEESSHHHHHHHHHHCS----SEEEEEEEESCSSSCSHHHHHHHHTT---S
T ss_pred cEEEEECCCCcHHHHHHHHh-hccCCceEEEcCCHHHHHHHHHcCC----CCEEEEEehhcCCCChHHHHHHhhcC---C
Confidence 46888 4888888776665 44433 789999999999999999 55444321 234444432 3
Q ss_pred eEeecccccccceEEEecCCCC
Q 003054 648 YAMIEPKFKTAGFGFVFPLHSP 669 (852)
Q Consensus 648 ~~~v~~~~~~~~~~~~~~k~sp 669 (852)
+.++++.+..-..++...+|..
T Consensus 76 l~I~gE~~l~I~h~Ll~~~g~~ 97 (267)
T 2qmw_A 76 VFAHGEIRLDINFALYGNGTDS 97 (267)
T ss_dssp SEEEEEEEEECCEEEECCSSCC
T ss_pred cEEEEEEEEEeeeEEEecCCCC
Confidence 8899998888888888777654
No 370
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=31.32 E-value=65 Score=33.07 Aligned_cols=78 Identities=12% Similarity=0.037 Sum_probs=53.6
Q ss_pred cEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHH
Q 003054 59 REAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKAN 136 (852)
Q Consensus 59 ~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~ 136 (852)
++|+++.. ++.|.....+.+.+++++.|.++.... .+.+.......+..+.+.++|.||+....... ..++.+.
T Consensus 61 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~l~ 136 (332)
T 2hsg_A 61 TTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSN---SDQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVEELK 136 (332)
T ss_dssp CEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEE---CCSHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHHHHT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEe---CCCChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHHH
Confidence 57888874 567888899999999999999876532 11122334556777888899998887643222 4566666
Q ss_pred HcCC
Q 003054 137 EIGL 140 (852)
Q Consensus 137 ~~G~ 140 (852)
+.|+
T Consensus 137 ~~~i 140 (332)
T 2hsg_A 137 KSPV 140 (332)
T ss_dssp TSSS
T ss_pred hCCC
Confidence 6665
No 371
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=31.29 E-value=64 Score=29.70 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=49.2
Q ss_pred cEEEEEEEeCCc--cc---ccHHHHHHHHHhC-----CceeeeeeecCCCCChHHHHHHHHHhhc-CCceEEEEEeCh--
Q 003054 59 REAVPIYVDNQY--GE---EMIPSLTDALQAI-----DTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFILHMLP-- 125 (852)
Q Consensus 59 ~~vaii~~d~~~--G~---~~~~~l~~~l~~~-----g~~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~viv~~~~~-- 125 (852)
-+|+||...|+- |+ .....+.+.+++. |.++.....++. +.+++...|.+..+ .+.|+||..+-.
T Consensus 6 ~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~D--d~~~i~~~l~~~~~~~~~DlVittGG~g~ 83 (167)
T 1uuy_A 6 YKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPD--EVERIKDILQKWSDVDEMDLILTLGGTGF 83 (167)
T ss_dssp EEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECS--CHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred cEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCC--CHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 478888865542 22 1235677788877 999887777763 36678888888764 578999988643
Q ss_pred ---hhHHHHHHHH
Q 003054 126 ---SLGSRIFEKA 135 (852)
Q Consensus 126 ---~~~~~i~~~a 135 (852)
+.....++++
T Consensus 84 g~~D~t~~a~~~~ 96 (167)
T 1uuy_A 84 TPRDVTPEATKKV 96 (167)
T ss_dssp STTCCHHHHHHHH
T ss_pred CCCCchHHHHHHH
Confidence 2345555443
No 372
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=30.73 E-value=40 Score=33.85 Aligned_cols=80 Identities=5% Similarity=0.049 Sum_probs=48.0
Q ss_pred CcEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHH
Q 003054 58 WREAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKA 135 (852)
Q Consensus 58 w~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a 135 (852)
-++|+++.. +++|.....+.+.+++++.|.++... +....+.......+..+.+.++|.||+....... ..++.+
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~l 84 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIV--YSGSADPEEQKHALLTAIERPVMGILLLSIALTD-DNLQLL 84 (290)
T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEE--C----------CHHHHHHSSCCSEEEEESCC-----CHHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEE--eCCCCCHHHHHHHHHHHHhcCCCEEEEecccCCH-HHHHHH
Confidence 357888874 46688888999999999999887643 0111112233456777778899999887654322 455666
Q ss_pred HHcCC
Q 003054 136 NEIGL 140 (852)
Q Consensus 136 ~~~G~ 140 (852)
.+.|+
T Consensus 85 ~~~~i 89 (290)
T 3clk_A 85 QSSDV 89 (290)
T ss_dssp HCC--
T ss_pred HhCCC
Confidence 66665
No 373
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=30.63 E-value=1.8e+02 Score=23.31 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=20.8
Q ss_pred cCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCcee
Q 003054 39 SLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRV 89 (852)
Q Consensus 39 ~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v 89 (852)
.-.|...++...++++.+|..-..+||..| +..++.|.......|.+|
T Consensus 57 vvddkewaekairfvkslgaqvliiiydqd---qnrleefsrevrrrgfev 104 (134)
T 2l69_A 57 VVDDKEWAEKAIRFVKSLGAQVLIIIYDQD---QNRLEEFSREVRRRGFEV 104 (134)
T ss_dssp ECSSHHHHHHHHHHHHHHCCCCEEEEECSC---HHHHHHHHHHHHHTTCCE
T ss_pred EEccHHHHHHHHHHHHhcCCeEEEEEEeCc---hhHHHHHHHHHHhcCceE
Confidence 334444444444444444444444444222 123444444444444443
No 374
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=30.46 E-value=4.2e+02 Score=26.46 Aligned_cols=76 Identities=14% Similarity=0.003 Sum_probs=45.8
Q ss_pred ceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHHhhcCCceEeecccccccceEEEecCCCCchhhHHHHHHhccc
Q 003054 604 KLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLIGQYCSKYAMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTE 683 (852)
Q Consensus 604 ~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e 683 (852)
++..+++..+..+.+.+|+ ++..+.............- .+.++-+--.....+++++|+++-.+.--++|..|..
T Consensus 175 ~~~~~~~~~~~~~~~~~G~----~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~i~k~s~~~e~A~~fi~fl~s 249 (320)
T 4euo_A 175 DIIWWSGGAQSQQLIASAE----APFGSVWNGRMTALEQSGV-KVETSWAQNITAADSLVVPKGTKNKDAAMKFIALATS 249 (320)
T ss_dssp GEEEECSHHHHHHHHHTTS----SCEEEEEHHHHHHHHHTTC-CCEEEEEEEEEEEEEEECBTTCSCHHHHHHHHHHHTS
T ss_pred ceeEeCCCchHHHHHHcCC----EEEEEeecHHHHHHHhCCC-CeEEEecCceeecceEEEECCCCCHHHHHHHHHHHhC
Confidence 3456677778889999999 7766655443333333322 2333222222234478899999977766667766654
Q ss_pred c
Q 003054 684 G 684 (852)
Q Consensus 684 ~ 684 (852)
.
T Consensus 250 ~ 250 (320)
T 4euo_A 250 A 250 (320)
T ss_dssp H
T ss_pred H
Confidence 4
No 375
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=30.35 E-value=87 Score=26.29 Aligned_cols=70 Identities=16% Similarity=0.086 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh--hhHHHHHHHHHHcCCcccceEEEEc
Q 003054 73 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP--SLGSRIFEKANEIGLMNKGCVWIMT 150 (852)
Q Consensus 73 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~--~~~~~i~~~a~~~G~~~~~~vwi~~ 150 (852)
.....+...+++.|.++.. .. +-...+..+++..||+|++.... .++..++++.++..-...-.+.+.+
T Consensus 13 ~~~~~l~~~l~~~g~~v~~---~~------~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s 83 (122)
T 3gl9_A 13 VLRKIVSFNLKKEGYEVIE---AE------NGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLT 83 (122)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES------SHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEE
T ss_pred HHHHHHHHHHHHCCcEEEE---eC------CHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEe
Confidence 3556777888888887642 11 23445667777899999987553 3578888888765422222344444
Q ss_pred C
Q 003054 151 D 151 (852)
Q Consensus 151 ~ 151 (852)
+
T Consensus 84 ~ 84 (122)
T 3gl9_A 84 A 84 (122)
T ss_dssp S
T ss_pred c
Confidence 3
No 376
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=29.50 E-value=46 Score=28.98 Aligned_cols=60 Identities=12% Similarity=0.062 Sum_probs=42.3
Q ss_pred ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh--hhHHHHHHHHHHcCC
Q 003054 73 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP--SLGSRIFEKANEIGL 140 (852)
Q Consensus 73 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~--~~~~~i~~~a~~~G~ 140 (852)
.....+.+.|++.|.+|+.. ..+-...+..+++..+|+|++...- -++..++++.++.+.
T Consensus 19 ~~~~~l~~~L~~~G~~v~~~--------a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~i 80 (123)
T 2lpm_A 19 MIAMLIEDTLCELGHEVAAT--------ASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNV 80 (123)
T ss_dssp TTSHHHHHHHHHHCCCCCBC--------SCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHCCCEEEEE--------ECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCC
Confidence 45677888899889876432 1123456677788899999988553 356788888888764
No 377
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=29.46 E-value=2.2e+02 Score=24.37 Aligned_cols=72 Identities=21% Similarity=0.255 Sum_probs=45.1
Q ss_pred ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh--hhHHHHHHHHHHcCCcccceEEEEc
Q 003054 73 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP--SLGSRIFEKANEIGLMNKGCVWIMT 150 (852)
Q Consensus 73 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~--~~~~~i~~~a~~~G~~~~~~vwi~~ 150 (852)
.....+.+.|++.|........ .+....+..+....+|+|++.... .++..++++.++.+....-.+.+.+
T Consensus 16 ~~~~~l~~~L~~~~~~~~v~~~-------~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s 88 (144)
T 3kht_A 16 DDIALIRRVLDRKDIHCQLEFV-------DNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILT 88 (144)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEE-------SSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEE
T ss_pred HHHHHHHHHHHhcCCCeeEEEE-------CCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEe
Confidence 4567788888888876322221 123455667777889999998654 3578889888874332222344444
Q ss_pred C
Q 003054 151 D 151 (852)
Q Consensus 151 ~ 151 (852)
+
T Consensus 89 ~ 89 (144)
T 3kht_A 89 D 89 (144)
T ss_dssp T
T ss_pred C
Confidence 4
No 378
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=29.23 E-value=1.5e+02 Score=31.61 Aligned_cols=94 Identities=14% Similarity=0.005 Sum_probs=61.4
Q ss_pred HHHcCCcEEEEEEEeCCcccccHHHHHHHHHhC------CceeeeeeecCC---CCChHHHHHHHHHhhcCC--c---eE
Q 003054 53 IKAFGWREAVPIYVDNQYGEEMIPSLTDALQAI------DTRVPYRSVISP---LATDDQIEKELYKLFTMQ--T---RV 118 (852)
Q Consensus 53 l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~------g~~v~~~~~~~~---~~~~~d~~~~l~~l~~~~--~---~v 118 (852)
++.++.+++.+++....+.. ..+.+.+.|++. |.++.. ..++. +.+.+.+......+++.+ + |+
T Consensus 31 ~~~~~~~k~liVtd~~v~~~-~~~~v~~~L~~~~~~~~~g~~~~~-~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~ 108 (393)
T 1sg6_A 31 ISDCSSTTYVLVTDTNIGSI-YTPSFEEAFRKRAAEITPSPRLLI-YNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTV 108 (393)
T ss_dssp HHHSCCSEEEEEEEHHHHHH-HHHHHHHHHHHHHHHSSSCCEEEE-EEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCE
T ss_pred HHhcCCCeEEEEECCcHHHH-HHHHHHHHHHhhhccccCCceeEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCE
Confidence 46778899999986544333 566777777766 776642 23443 234566777788888888 7 88
Q ss_pred EEEEeCh--hhHHHHHHHHHHcCCcccceEEEEcC
Q 003054 119 FILHMLP--SLGSRIFEKANEIGLMNKGCVWIMTD 151 (852)
Q Consensus 119 iv~~~~~--~~~~~i~~~a~~~G~~~~~~vwi~~~ 151 (852)
||-.+-+ -|...++......|+ .++-|-|.
T Consensus 109 iIalGGGsv~D~ak~~Aa~~~rgi---p~i~IPTT 140 (393)
T 1sg6_A 109 VIALGGGVIGDLTGFVASTYMRGV---RYVQVPTT 140 (393)
T ss_dssp EEEEESHHHHHHHHHHHHHGGGCC---EEEEEECS
T ss_pred EEEECCcHHHHHHHHHHHHhcCCC---CEEEECCc
Confidence 8876654 577777776666664 35555554
No 379
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=29.08 E-value=98 Score=26.47 Aligned_cols=55 Identities=7% Similarity=0.029 Sum_probs=33.8
Q ss_pred ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHc
Q 003054 73 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEI 138 (852)
Q Consensus 73 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~ 138 (852)
...+.+.+.|+..|.+|.. . .+ ....+..+....+|+|+ +...++..+++++++.
T Consensus 29 ~~~~~l~~~L~~~g~~v~~---~---~~---~~~al~~l~~~~~dlvi--~~~~~g~~~~~~l~~~ 83 (137)
T 2pln_A 29 VLGGEIEKGLNVKGFMADV---T---ES---LEDGEYLMDIRNYDLVM--VSDKNALSFVSRIKEK 83 (137)
T ss_dssp HHHHHHHHHHHHTTCEEEE---E---SC---HHHHHHHHHHSCCSEEE--ECSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcEEEE---e---CC---HHHHHHHHHcCCCCEEE--EcCccHHHHHHHHHhc
Confidence 3456677777777776541 1 11 23344455556788888 5555667777777775
No 380
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=28.94 E-value=1.2e+02 Score=33.02 Aligned_cols=87 Identities=16% Similarity=0.153 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeC
Q 003054 45 QAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 124 (852)
Q Consensus 45 ~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~ 124 (852)
....+|...+.. ..-+.++. |..|-.+..+.+...-+..++.|..+..+ . + .+ ++..++..++|+|++...
T Consensus 69 ~~~~iA~~y~~~-A~~IsvLT-d~~~F~gs~~dL~~vr~~v~lPvLrKDFI-~---d-~~--Qi~ea~~~GAD~ILLi~a 139 (452)
T 1pii_A 69 DPARIAAIYKHY-ASAISVLT-DEKYFQGSFNFLPIVSQIAPQPILCKDFI-I---D-PY--QIYLARYYQADACLLMLS 139 (452)
T ss_dssp CHHHHHHHHTTT-CSEEEEEC-CSTTTCCCTTHHHHHHHHCCSCEEEESCC-C---S-HH--HHHHHHHTTCSEEEEETT
T ss_pred CHHHHHHHHHhh-CcEEEEEe-cccccCCCHHHHHHHHHhcCCCeEEEecc-C---C-HH--HHHHHHHcCCCEEEEEcc
Confidence 334555444333 55555555 77777788888887777778887655432 1 1 23 577799999999988865
Q ss_pred h---hhHHHHHHHHHHcCC
Q 003054 125 P---SLGSRIFEKANEIGL 140 (852)
Q Consensus 125 ~---~~~~~i~~~a~~~G~ 140 (852)
. .+...+++.|+++||
T Consensus 140 ~l~~~~l~~l~~~a~~lgm 158 (452)
T 1pii_A 140 VLDDDQYRQLAAVAHSLEM 158 (452)
T ss_dssp TCCHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHcCC
Confidence 3 467899999999998
No 381
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=28.87 E-value=2.2e+02 Score=30.23 Aligned_cols=88 Identities=9% Similarity=0.043 Sum_probs=49.2
Q ss_pred CcEEEEEEEe-CCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeC------hhhHHH
Q 003054 58 WREAVPIYVD-NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML------PSLGSR 130 (852)
Q Consensus 58 w~~vaii~~d-~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~------~~~~~~ 130 (852)
.+++.++|.. ....+.+++.+.+.+++.|.++..... . +.+......++. +.|+|++.+. +.....
T Consensus 256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l-~----~~~~~~~~~~l~--~~D~iiigsP~y~~~~~~~~k~ 328 (414)
T 2q9u_A 256 QKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEM-T----SSDITKVALHTY--DSGAVAFASPTLNNTMMPSVAA 328 (414)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEG-G----GCCHHHHHHHHH--TCSEEEEECCCBTTBCCHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEc-C----cCCHHHHHHHHH--hCCEEEEEcCccCcCchHHHHH
Confidence 5788888832 222355667777777777776543321 1 222334444554 5677777654 245677
Q ss_pred HHHHHHHcCC-cccceEEEEcCc
Q 003054 131 IFEKANEIGL-MNKGCVWIMTDG 152 (852)
Q Consensus 131 i~~~a~~~G~-~~~~~vwi~~~~ 152 (852)
++.......+ .++..+.+.+.+
T Consensus 329 fld~l~~~~~~~~K~~~~~~t~g 351 (414)
T 2q9u_A 329 ALNYVRGLTLIKGKPAFAFGAFG 351 (414)
T ss_dssp HHHHHHHHTTTTTSBEEEEEEES
T ss_pred HHHHHHhhcccCCCEEEEEEecC
Confidence 7777665444 445444555443
No 382
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=28.78 E-value=73 Score=34.00 Aligned_cols=110 Identities=11% Similarity=0.001 Sum_probs=68.2
Q ss_pred CceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecC---CCCChHHHHHHHH
Q 003054 33 PYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVIS---PLATDDQIEKELY 109 (852)
Q Consensus 33 py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~---~~~~~~d~~~~l~ 109 (852)
+|=+...+....+. . +++.++.+++.+|+....+.. ..+.+.+.|++.|+++... .++ ++.+.+.+...+.
T Consensus 41 ~y~I~~G~g~l~~l---~-~l~~~~~~rvlIVtd~~v~~~-~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~~~ 114 (390)
T 3okf_A 41 SYPISIGAGLFANP---A-LLSLSAKQKVVIVTNHTVAPL-YAPAIISLLDHIGCQHALL-ELPDGEQYKTLETFNTVMS 114 (390)
T ss_dssp CEEEEEETTGGGCG---G-GGCCCTTCEEEEEEETTTHHH-HHHHHHHHHHHHTCEEEEE-EECSSGGGCBHHHHHHHHH
T ss_pred CCCEEEeCCHHHhH---H-HHHhcCCCEEEEEECCcHHHH-HHHHHHHHHHHcCCeEEEE-EECCCcCCchHHHHHHHHH
Confidence 55445555433332 2 444556799999986655543 7788888999989876432 222 2234566777778
Q ss_pred HhhcCCc---eEEEEEeCh--hhHHHHHHHHHHcCCcccceEEEEcC
Q 003054 110 KLFTMQT---RVFILHMLP--SLGSRIFEKANEIGLMNKGCVWIMTD 151 (852)
Q Consensus 110 ~l~~~~~---~viv~~~~~--~~~~~i~~~a~~~G~~~~~~vwi~~~ 151 (852)
.+++.++ |+||..+.+ -|...++......|. .++-|-|.
T Consensus 115 ~l~~~~~~R~d~IIAvGGGsv~D~ak~~Aa~~~rgi---p~I~IPTT 158 (390)
T 3okf_A 115 FLLEHNYSRDVVVIALGGGVIGDLVGFAAACYQRGV---DFIQIPTT 158 (390)
T ss_dssp HHHHTTCCTTCEEEEEESHHHHHHHHHHHHHBTTCC---EEEEEECS
T ss_pred HHHhcCCCcCcEEEEECCcHHhhHHHHHHHHhcCCC---CEEEeCCC
Confidence 8887777 688777654 466777765555553 35555554
No 383
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=28.68 E-value=82 Score=27.06 Aligned_cols=71 Identities=6% Similarity=-0.010 Sum_probs=44.7
Q ss_pred ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh--hhHHHHHHHHHHcCCcccceEEEEc
Q 003054 73 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP--SLGSRIFEKANEIGLMNKGCVWIMT 150 (852)
Q Consensus 73 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~--~~~~~i~~~a~~~G~~~~~~vwi~~ 150 (852)
.....+.+.|++.|.+|... . +....+..++...+|+|++.... .++..++++.++......-.+.+.+
T Consensus 17 ~~~~~l~~~l~~~g~~v~~~---~------~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s 87 (140)
T 3grc_A 17 DIARLLNLMLEKGGFDSDMV---H------SAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVS 87 (140)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---C------SHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEEC
T ss_pred HHHHHHHHHHHHCCCeEEEE---C------CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEe
Confidence 45677788888888875321 1 23445666777889999998653 4578888888874322222344444
Q ss_pred Cc
Q 003054 151 DG 152 (852)
Q Consensus 151 ~~ 152 (852)
+.
T Consensus 88 ~~ 89 (140)
T 3grc_A 88 AN 89 (140)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 384
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=28.47 E-value=1.5e+02 Score=25.28 Aligned_cols=58 Identities=17% Similarity=0.080 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHh-CCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChh--hHHHHHHHHHHc
Q 003054 73 EMIPSLTDALQA-IDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS--LGSRIFEKANEI 138 (852)
Q Consensus 73 ~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~--~~~~i~~~a~~~ 138 (852)
.....+.+.|++ .|.+++... . +....+..+++..+|+|++....+ ++..++++.++.
T Consensus 19 ~~~~~l~~~L~~~~~~~~v~~~-----~---~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~ 79 (143)
T 3cnb_A 19 EFADMLTQFLENLFPYAKIKIA-----Y---NPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKST 79 (143)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEE-----C---SHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhccCccEEEEE-----C---CHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhC
Confidence 456677788888 888732221 1 133445566667899999986543 577888888874
No 385
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=28.27 E-value=2.7e+02 Score=25.53 Aligned_cols=97 Identities=6% Similarity=-0.096 Sum_probs=49.7
Q ss_pred cCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhh-cCCce
Q 003054 39 SLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLF-TMQTR 117 (852)
Q Consensus 39 ~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~-~~~~~ 117 (852)
++....|++.+++.++..+..--.|+.++-.-....++.+.+. ....++.....+.+..+..++...+.++. ..+.+
T Consensus 26 t~~G~~qA~~~~~~L~~~~~~~~~i~sSp~~Ra~qTa~~l~~~--~~~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~~~~ 103 (172)
T 3f2i_A 26 TQEGKQKTEKVAYRLVKLGRQFDLIVTSPLIRARQTAEILLAS--GLSCQLEESNHLAPNGNIFNWLDYWLKPKNFPENA 103 (172)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCSEEEECSSHHHHHHHHHHHHT--TSCSCEEECGGGSTTCCHHHHHHHTHHHHCCCTTC
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHhc--CCCCCeEECcccCCccCHHHHHHHHHHhccCCCCC
Confidence 3445579999999998765432233333332223333333222 12233433333323333333444443322 25567
Q ss_pred EEEEEeChhhHHHHHHHHHH
Q 003054 118 VFILHMLPSLGSRIFEKANE 137 (852)
Q Consensus 118 viv~~~~~~~~~~i~~~a~~ 137 (852)
.+++.+..+....++...-.
T Consensus 104 ~vllVgH~P~l~~l~~~L~~ 123 (172)
T 3f2i_A 104 QIAIVGHEPCLSNWTEILLW 123 (172)
T ss_dssp EEEEEECTTHHHHHHHHHHH
T ss_pred EEEEEeCChHHHHHHHHHhc
Confidence 78888888888777777654
No 386
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=28.19 E-value=2.7e+02 Score=27.28 Aligned_cols=87 Identities=6% Similarity=0.029 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCcEEEEE---------------EEeCCcccccHHHHHHHHHhCC--ceeeeeeecCCCCChHHHHHH
Q 003054 45 QAGAITAIIKAFGWREAVPI---------------YVDNQYGEEMIPSLTDALQAID--TRVPYRSVISPLATDDQIEKE 107 (852)
Q Consensus 45 ~~~aia~~l~~~gw~~vaii---------------~~d~~~G~~~~~~l~~~l~~~g--~~v~~~~~~~~~~~~~d~~~~ 107 (852)
.+..++..+...|..++.++ +..++-|+.-++.+.+.+++.+ ++|... +...+.++....
T Consensus 39 lG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~---~~~~~~~~~~~~ 115 (251)
T 1zud_1 39 LGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL---QQRLTGEALKDA 115 (251)
T ss_dssp THHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE---CSCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE---eccCCHHHHHHH
Confidence 45678888888899999887 3334457788889999998754 444332 211223333333
Q ss_pred HHHhhcCCceEEEEEeChhhHHHHHH-HHHHcC
Q 003054 108 LYKLFTMQTRVFILHMLPSLGSRIFE-KANEIG 139 (852)
Q Consensus 108 l~~l~~~~~~viv~~~~~~~~~~i~~-~a~~~G 139 (852)
+. +.|+||.+.....++..+. .+++.|
T Consensus 116 ~~-----~~DvVi~~~d~~~~r~~l~~~~~~~~ 143 (251)
T 1zud_1 116 VA-----RADVVLDCTDNMATRQEINAACVALN 143 (251)
T ss_dssp HH-----HCSEEEECCSSHHHHHHHHHHHHHTT
T ss_pred Hh-----cCCEEEECCCCHHHHHHHHHHHHHhC
Confidence 32 5799998877666655544 445544
No 387
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=28.11 E-value=48 Score=22.28 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 003054 729 AILALIIFMAVFIHQH 744 (852)
Q Consensus 729 ~~lsl~vf~~e~~~~~ 744 (852)
.++++++.++.++|+|
T Consensus 22 ~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 22 LGAALLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHeec
Confidence 3344444444455443
No 388
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=27.92 E-value=1.2e+02 Score=30.27 Aligned_cols=86 Identities=5% Similarity=-0.042 Sum_probs=54.8
Q ss_pred HHHHHHcCCcEEEEEEEe--CCccc-ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChh
Q 003054 50 TAIIKAFGWREAVPIYVD--NQYGE-EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS 126 (852)
Q Consensus 50 a~~l~~~gw~~vaii~~d--~~~G~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~ 126 (852)
|+-++.-.-+.|+++..+ +.|-. ...+.+.+++++.|..+..... ..+.......+..+.+.++|.||+.....
T Consensus 5 Ar~L~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 81 (301)
T 3miz_A 5 ARLIRSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANT---GGSSEREVEIWKMFQSHRIDGVLYVTMYR 81 (301)
T ss_dssp -------CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEEEEEE
T ss_pred HHHHhhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeC---CCChHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 334444455789998854 35666 8999999999999998865432 22344556778888889999998876543
Q ss_pred hHHHHHHHHHHcCC
Q 003054 127 LGSRIFEKANEIGL 140 (852)
Q Consensus 127 ~~~~i~~~a~~~G~ 140 (852)
.. .++.+.+.|+
T Consensus 82 ~~--~~~~~~~~~i 93 (301)
T 3miz_A 82 RI--VDPESGDVSI 93 (301)
T ss_dssp EE--CCCCCTTCCC
T ss_pred cH--HHHHHHhCCC
Confidence 32 4445555554
No 389
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=27.62 E-value=15 Score=22.36 Aligned_cols=19 Identities=21% Similarity=0.622 Sum_probs=14.5
Q ss_pred ccccchhHHHHHHHhhhcc
Q 003054 508 GQQVGTSFWFSFSTMVFSQ 526 (852)
Q Consensus 508 ~~~~~~~~~~~~~~l~~~~ 526 (852)
...+..++||++++|+..+
T Consensus 6 ~~~l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 6 ALTLSSAMWFSWGVLLNSG 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ceehhhhHHHhhHhheecc
Confidence 3467789999999998543
No 390
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=27.47 E-value=40 Score=34.04 Aligned_cols=80 Identities=9% Similarity=0.006 Sum_probs=56.2
Q ss_pred cEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhh-HHHHHHHH
Q 003054 59 REAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSL-GSRIFEKA 135 (852)
Q Consensus 59 ~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~-~~~i~~~a 135 (852)
++|+++.. +++|.....+.+.+++++.|.++.....- ...+.......+..+.+.++|.||+...... ....++++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~ 84 (304)
T 3o1i_D 6 EKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAG-GYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLKSW 84 (304)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECS-STTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCC-CCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHH
Confidence 57888884 46678888999999999999987654321 1013445667788888889999998765433 24456777
Q ss_pred HHcCC
Q 003054 136 NEIGL 140 (852)
Q Consensus 136 ~~~G~ 140 (852)
. .|+
T Consensus 85 ~-~~i 88 (304)
T 3o1i_D 85 V-GNT 88 (304)
T ss_dssp T-TTS
T ss_pred c-CCC
Confidence 6 675
No 391
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=27.37 E-value=1.2e+02 Score=28.64 Aligned_cols=64 Identities=16% Similarity=0.136 Sum_probs=43.0
Q ss_pred cEEEEEEEeCCcc-----cccHHHHHHHHHhCCce--eeeeeecCCCCChHHHHHHHHHhhcC-CceEEEEEeC
Q 003054 59 REAVPIYVDNQYG-----EEMIPSLTDALQAIDTR--VPYRSVISPLATDDQIEKELYKLFTM-QTRVFILHML 124 (852)
Q Consensus 59 ~~vaii~~d~~~G-----~~~~~~l~~~l~~~g~~--v~~~~~~~~~~~~~d~~~~l~~l~~~-~~~viv~~~~ 124 (852)
-+|+||...|+-- ......+.+.|++.|.+ +.....++ .+.+.+...|.++.+. ++|+|+..+-
T Consensus 4 ~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~--Dd~~~I~~al~~a~~~~~~DlVitTGG 75 (195)
T 1di6_A 4 LRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIP--DEQAIIEQTLCELVDEMSCHLVLTTGG 75 (195)
T ss_dssp EEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEE--SCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4788888665532 23456788889988887 45555555 2356788888877654 6899988854
No 392
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=26.79 E-value=88 Score=26.91 Aligned_cols=56 Identities=5% Similarity=-0.051 Sum_probs=40.5
Q ss_pred ccHHHHHHHHHh-CCceeeeeeecCCCCChHHHHHHHHHhhc-CCceEEEEEeCh---hhHHHHHHHHHH
Q 003054 73 EMIPSLTDALQA-IDTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFILHMLP---SLGSRIFEKANE 137 (852)
Q Consensus 73 ~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~viv~~~~~---~~~~~i~~~a~~ 137 (852)
.....+.+.|++ .|.+|... .+....+..+++ ..+|+|++.... .++..++++.++
T Consensus 15 ~~~~~l~~~L~~~~~~~v~~~---------~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~ 75 (140)
T 3lua_A 15 YEREKTKIIFDNIGEYDFIEV---------ENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRN 75 (140)
T ss_dssp HHHHHHHHHHHHHCCCEEEEE---------CSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCccEEEE---------CCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHh
Confidence 456677888888 88876521 123456777788 899999998653 467888999888
No 393
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=26.76 E-value=2.4e+02 Score=28.02 Aligned_cols=100 Identities=12% Similarity=0.039 Sum_probs=56.6
Q ss_pred HHHHHHHH-HcCCcEEEEEE-EeCCcccccHHHHHHH--------HHhC-CceeeeeeecCCCCChHHHHHHHHHhhcCC
Q 003054 47 GAITAIIK-AFGWREAVPIY-VDNQYGEEMIPSLTDA--------LQAI-DTRVPYRSVISPLATDDQIEKELYKLFTMQ 115 (852)
Q Consensus 47 ~aia~~l~-~~gw~~vaii~-~d~~~G~~~~~~l~~~--------l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~ 115 (852)
+.+..+++ ..+-+..+++. ...+.-.-....+... |+.. |.+|.+--. +.. ....+..+++.+
T Consensus 107 ~~~~~~l~~~~~~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~---~vp---~e~iv~aa~e~~ 180 (262)
T 1xrs_B 107 EETDEYIKENIGRKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGS---QVA---NEDFIKKAVELE 180 (262)
T ss_dssp HHHHHHHHHHTCSCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCS---SBC---HHHHHHHHHHTT
T ss_pred HHHHHHHHhhcCCCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCC---CCC---HHHHHHHHHHcC
Confidence 44444453 44433333444 3333222223344444 8888 999865322 112 334556677789
Q ss_pred ceEEEEEeChh-------hHHHHHHHHHHcCCcccceEEEEcCc
Q 003054 116 TRVFILHMLPS-------LGSRIFEKANEIGLMNKGCVWIMTDG 152 (852)
Q Consensus 116 ~~viv~~~~~~-------~~~~i~~~a~~~G~~~~~~vwi~~~~ 152 (852)
||+|.+.+... ....+++++++.|+..+-.+++++..
T Consensus 181 ~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~ 224 (262)
T 1xrs_B 181 ADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPR 224 (262)
T ss_dssp CSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTT
T ss_pred CCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECCc
Confidence 99999987433 35667888999987544445555443
No 394
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=25.61 E-value=1.5e+02 Score=30.61 Aligned_cols=93 Identities=4% Similarity=-0.022 Sum_probs=48.0
Q ss_pred eEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCccc-ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhc
Q 003054 35 FFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGE-EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT 113 (852)
Q Consensus 35 ~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~ 113 (852)
++.++++.......+.. .+++.+|+. -.-|. ...+.+.+.|++.|.++.....-. ..+......++..
T Consensus 12 ~~~~~~~~~~~~~~m~~------~~~~~vi~N-p~sg~~~~~~~i~~~l~~~g~~~~~~~t~~----~~~~~~~~~~~~~ 80 (332)
T 2bon_A 12 LYKKAGSETLYIQGMAE------FPASLLILN-GKSTDNLPLREAIMLLREEGMTIHVRVTWE----KGDAARYVEEARK 80 (332)
T ss_dssp ------------------------CCEEEEEC-SSSTTCHHHHHHHHHHHTTTCCEEEEECCS----TTHHHHHHHHHHH
T ss_pred eeeeccCcchhhhhhhh------cceEEEEEC-CCCCCCchHHHHHHHHHHcCCcEEEEEecC----cchHHHHHHHHHh
Confidence 34444444444444332 267888883 22232 455677888888998775543221 1233344445545
Q ss_pred CCceEEEEEeChhhHHHHHHHHHHc
Q 003054 114 MQTRVFILHMLPSLGSRIFEKANEI 138 (852)
Q Consensus 114 ~~~~viv~~~~~~~~~~i~~~a~~~ 138 (852)
.++|.||+.+-......+++.+.+.
T Consensus 81 ~~~d~vvv~GGDGTl~~v~~~l~~~ 105 (332)
T 2bon_A 81 FGVATVIAGGGDGTINEVSTALIQC 105 (332)
T ss_dssp HTCSEEEEEESHHHHHHHHHHHHHC
T ss_pred cCCCEEEEEccchHHHHHHHHHhhc
Confidence 6789998888887888888877743
No 395
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=25.52 E-value=1.7e+02 Score=29.61 Aligned_cols=79 Identities=11% Similarity=0.066 Sum_probs=56.8
Q ss_pred CCeEEE--EeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEech---------hHHHHHHhhcCCce
Q 003054 580 GDNVGY--QKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEI---------PYMKLLIGQYCSKY 648 (852)
Q Consensus 580 ~~~vg~--~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~---------~~~~~~~~~~~~~~ 648 (852)
+.+|++ ..|+|.+.-..+. + .++++.+.++.++++.+|+ ++..+... ..++.+.. ..+
T Consensus 6 ~~~iaylGp~Gtfs~~Aa~~~-f---~~~p~~s~~~vf~aV~~g~----~d~gVvPiENS~~G~V~~t~DlL~~---~~l 74 (283)
T 2qmx_A 6 NWLIAYQGEPGAYSEIAALRF-G---EPLPCESFDDVFSAVTEQK----ADYAVIPIENSLGGSIHQNYDLLLR---RPV 74 (283)
T ss_dssp CCEEEEESCTTSHHHHHHHHH-S---EEEEESCHHHHHHHHHTTS----CSEEEEEEEESSSCBCHHHHHHHHH---SSE
T ss_pred CcEEEEECCCCCHHHHHHHHH-h---HhCcCCCHHHHHHHHHCCC----CCEEEEeehhcCCCccHHHHHHhhc---CCc
Confidence 347888 4888888777665 3 6789999999999999999 44333221 23444544 248
Q ss_pred EeecccccccceEEEecCCCC
Q 003054 649 AMIEPKFKTAGFGFVFPLHSP 669 (852)
Q Consensus 649 ~~v~~~~~~~~~~~~~~k~sp 669 (852)
.++++.+..-..++...+|..
T Consensus 75 ~I~gE~~l~I~h~Ll~~~g~~ 95 (283)
T 2qmx_A 75 VILAETFVKVEHCLLGLPGAS 95 (283)
T ss_dssp EEEEEEEEECCCEEEECSSCC
T ss_pred EEEEEEEEeeeeeEecCCCCC
Confidence 899998888888888777754
No 396
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=25.33 E-value=1.1e+02 Score=31.55 Aligned_cols=84 Identities=14% Similarity=0.121 Sum_probs=55.6
Q ss_pred CCeEEEE--eCchHHHHHHhcCC-CCcceeecCCHhHHHHHhhcccccCceeEEEech---------hHHHHHHhhcCCc
Q 003054 580 GDNVGYQ--KGSFVLGILKQLGF-DERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEI---------PYMKLLIGQYCSK 647 (852)
Q Consensus 580 ~~~vg~~--~~s~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~---------~~~~~~~~~~~~~ 647 (852)
..+|+++ .|+|.+.-.++... +...++++.+.++.++++.+|+ ++..+... ..++.+. ++. .
T Consensus 6 ~~~VaylGp~GtfS~~Aa~~~~~~~~~~~~p~~s~~~vf~aV~~g~----~d~gVvPiENS~~G~V~~tlD~L~-~~~-~ 79 (313)
T 3mwb_A 6 AVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGE----ADAAMVPIENSVEGGVTATLDAIA-TGQ-E 79 (313)
T ss_dssp -CEEEEESSTTSHHHHHHTTSTTGGGSEEEEESSHHHHHHHHHTTS----CSEEEEEEESCTTCCHHHHHHHTT-SSS-C
T ss_pred ccEEEEECCCCcHHHHHHHHHhhcCCccEEecCCHHHHHHHHHcCC----CCeeEEEEeecCCCccHHHHHHhh-CCC-C
Confidence 4578884 78888877766521 3456789999999999999999 54333221 1233332 222 4
Q ss_pred eEeecccccccceEEEecCCCC
Q 003054 648 YAMIEPKFKTAGFGFVFPLHSP 669 (852)
Q Consensus 648 ~~~v~~~~~~~~~~~~~~k~sp 669 (852)
+.++++.+.....++...+|..
T Consensus 80 l~IvgE~~l~I~h~Ll~~~g~~ 101 (313)
T 3mwb_A 80 LRIIREALVPITFVLVARPGVE 101 (313)
T ss_dssp CEEEEEEEEECCCEEEECTTCC
T ss_pred eEEEEEEEEeeeEEEEcCCCCC
Confidence 8899998877777777666644
No 397
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=25.05 E-value=1e+02 Score=28.61 Aligned_cols=63 Identities=19% Similarity=0.127 Sum_probs=43.2
Q ss_pred cEEEEEEEeCCc--c---cccHHHHHHHHH---hCCceeeeeeecCCCCChHHHHHHHHHhhcC-CceEEEEEeC
Q 003054 59 REAVPIYVDNQY--G---EEMIPSLTDALQ---AIDTRVPYRSVISPLATDDQIEKELYKLFTM-QTRVFILHML 124 (852)
Q Consensus 59 ~~vaii~~d~~~--G---~~~~~~l~~~l~---~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~-~~~viv~~~~ 124 (852)
-+|+||...|+- | ......+.+.++ +.|.++ ....++ .+.+++...|.+..+. +.|+||+.+-
T Consensus 6 ~rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~--Dd~~~I~~~l~~~~~~~~~DlVittGG 77 (178)
T 2pbq_A 6 AVIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIP--DERDLIEKTLIELADEKGCSLILTTGG 77 (178)
T ss_dssp CEEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEESC
T ss_pred CEEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcC--CCHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 378888865542 2 223456777777 899998 555665 3366788888887653 7899998864
No 398
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=24.97 E-value=3.4e+02 Score=26.74 Aligned_cols=85 Identities=11% Similarity=-0.058 Sum_probs=55.3
Q ss_pred cEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeee-cCCCCChHHHHHHHHHhhcCCceEEEEEeCh----hhHHHHHH
Q 003054 59 REAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSV-ISPLATDDQIEKELYKLFTMQTRVFILHMLP----SLGSRIFE 133 (852)
Q Consensus 59 ~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~-~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~----~~~~~i~~ 133 (852)
.+|.+.....+.-.-....+...|+..|.+|.+--. .| .+++ +..++..+||+|.+.+.. .....+++
T Consensus 124 ~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp----~e~l---~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~ 196 (258)
T 2i2x_B 124 GTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVP----AEEV---LAAVQKEKPIMLTGTALMTTTMYAFKEVND 196 (258)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECC----SHHH---HHHHHHHCCSEEEEECCCTTTTTHHHHHHH
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCC----HHHH---HHHHHHcCCCEEEEEeeccCCHHHHHHHHH
Confidence 466666655554444566677788999999865432 32 2334 455566799999988743 45678899
Q ss_pred HHHHcCCcccceEEEEcCc
Q 003054 134 KANEIGLMNKGCVWIMTDG 152 (852)
Q Consensus 134 ~a~~~G~~~~~~vwi~~~~ 152 (852)
++++.|...+ +++++..
T Consensus 197 ~l~~~~~~~~--v~vGG~~ 213 (258)
T 2i2x_B 197 MLLENGIKIP--FACGGGA 213 (258)
T ss_dssp HHHTTTCCCC--EEEESTT
T ss_pred HHHhcCCCCc--EEEECcc
Confidence 9999887533 5555433
No 399
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=24.82 E-value=47 Score=33.80 Aligned_cols=73 Identities=11% Similarity=0.007 Sum_probs=46.0
Q ss_pred EeeHHHHHHHHHH---C--CCccceEEEecCCCCCCCCCChhHHHHHHhcCcccEEEeeeeeecCcc--eeeec-cc-cc
Q 003054 377 GYCVDVFKAVIQE---L--PYAVAYDFVPYGQPDGSSSGSYNDLVYQVFLGEFDAVVGDITIVFNRS--NYVDF-TL-PY 447 (852)
Q Consensus 377 G~~~dl~~~ia~~---l--~~~~~~~~~~~~~~~g~~ngs~~~li~~l~~g~~D~~~g~~~it~~r~--~~vdf-t~-p~ 447 (852)
.+.-++++.+.++ . + .+++++.. ++-..++.+|.+|++|+++..-....+.. ..+.+ .. |+
T Consensus 33 ~~lp~ll~~F~~~~~~~~~P-~v~v~l~~---------~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l 102 (294)
T 3cvg_A 33 GLVKELADAFIKSKVDSGSA-PFKVAWYK---------SDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYA 102 (294)
T ss_dssp THHHHHHHHHHHHHHSCC----CEEEEEE---------CCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEE
T ss_pred HHHHHHHHHHHhhhcccCCC-CeEEEEEe---------CCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeE
Confidence 3456788888888 7 2 24555544 35789999999999999875321111100 01112 24 78
Q ss_pred cccceEEEEEcc
Q 003054 448 TESGVSMIVPIK 459 (852)
Q Consensus 448 ~~~~~~~vv~~~ 459 (852)
....++++++..
T Consensus 103 ~~d~lvlv~~~~ 114 (294)
T 3cvg_A 103 FRDHFMLIGPPS 114 (294)
T ss_dssp EEEEEEEEECTT
T ss_pred EeccEEEEecCC
Confidence 888999999865
No 400
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=24.77 E-value=90 Score=26.74 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh----hhHHHHHHHHHHcCC
Q 003054 73 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP----SLGSRIFEKANEIGL 140 (852)
Q Consensus 73 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~----~~~~~i~~~a~~~G~ 140 (852)
.....+.+.|++.|.+|... .+....+..+++..+|+|++.... .++..+++++++.+-
T Consensus 17 ~~~~~l~~~L~~~g~~v~~~---------~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~ 79 (136)
T 3kto_A 17 DARAALSKLLSPLDVTIQCF---------ASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGF 79 (136)
T ss_dssp HHHHHHHHHHTTSSSEEEEE---------SSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCcEEEEe---------CCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCC
Confidence 45677888888888876421 123456667777889999998664 347888999988763
No 401
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=24.76 E-value=1.8e+02 Score=29.08 Aligned_cols=88 Identities=8% Similarity=0.141 Sum_probs=60.4
Q ss_pred HHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEe--
Q 003054 46 AGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHM-- 123 (852)
Q Consensus 46 ~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~-- 123 (852)
...+|+....-|..-+.++. |..|-.+..+.++..-+..++.|.....+ .++ + ++...+..++|.|++..
T Consensus 74 p~~~A~~y~~~GA~~isvlt-d~~~f~Gs~~~l~~ir~~v~lPvl~kdfi---id~--~--qv~~A~~~GAD~VlLi~a~ 145 (272)
T 3qja_A 74 PAKLAQAYQDGGARIVSVVT-EQRRFQGSLDDLDAVRASVSIPVLRKDFV---VQP--Y--QIHEARAHGADMLLLIVAA 145 (272)
T ss_dssp HHHHHHHHHHTTCSEEEEEC-CGGGHHHHHHHHHHHHHHCSSCEEEESCC---CSH--H--HHHHHHHTTCSEEEEEGGG
T ss_pred HHHHHHHHHHcCCCEEEEec-ChhhcCCCHHHHHHHHHhCCCCEEECccc---cCH--H--HHHHHHHcCCCEEEEeccc
Confidence 34566666777989888876 55565565667766666677777654322 112 2 45666779999999853
Q ss_pred -ChhhHHHHHHHHHHcCCc
Q 003054 124 -LPSLGSRIFEKANEIGLM 141 (852)
Q Consensus 124 -~~~~~~~i~~~a~~~G~~ 141 (852)
...+...+++.+++.||.
T Consensus 146 l~~~~l~~l~~~a~~lGl~ 164 (272)
T 3qja_A 146 LEQSVLVSMLDRTESLGMT 164 (272)
T ss_dssp SCHHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHCCCc
Confidence 456788899999999983
No 402
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=23.52 E-value=3.8e+02 Score=27.52 Aligned_cols=77 Identities=13% Similarity=0.040 Sum_probs=50.2
Q ss_pred CcEEEEEEEeCCccc----ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHH
Q 003054 58 WREAVPIYVDNQYGE----EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFE 133 (852)
Q Consensus 58 w~~vaii~~d~~~G~----~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~ 133 (852)
-+++.+|+ |-.-|. ...+.+.+.|++.|+++.....-. ..+......++...++|+||+.+-......+++
T Consensus 24 m~~i~vI~-NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~----~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~ 98 (337)
T 2qv7_A 24 RKRARIIY-NPTSGKEQFKRELPDALIKLEKAGYETSAYATEK----IGDATLEAERAMHENYDVLIAAGGDGTLNEVVN 98 (337)
T ss_dssp CEEEEEEE-CTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCS----TTHHHHHHHHHTTTTCSEEEEEECHHHHHHHHH
T ss_pred cceEEEEE-CCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecC----cchHHHHHHHHhhcCCCEEEEEcCchHHHHHHH
Confidence 37888888 333343 345678888999998765543211 223444555666678899998888877788887
Q ss_pred HHHHcC
Q 003054 134 KANEIG 139 (852)
Q Consensus 134 ~a~~~G 139 (852)
.+.+.+
T Consensus 99 ~l~~~~ 104 (337)
T 2qv7_A 99 GIAEKP 104 (337)
T ss_dssp HHTTCS
T ss_pred HHHhCC
Confidence 774433
No 403
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=23.46 E-value=2.8e+02 Score=27.29 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=65.8
Q ss_pred HHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh
Q 003054 46 AGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP 125 (852)
Q Consensus 46 ~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~ 125 (852)
...+|+.....|..-+.++. ++.|-.+..+.+...-+..++.|.....+ .+ . + ++...+..++|.|++....
T Consensus 67 p~~~A~~~~~~GA~~isvlt-~~~~f~G~~~~l~~i~~~v~lPvl~kdfI-~d--~--~--qi~~a~~~GAD~VlL~~~~ 138 (254)
T 1vc4_A 67 PVEAALAYARGGARAVSVLT-EPHRFGGSLLDLKRVREAVDLPLLRKDFV-VD--P--F--MLEEARAFGASAALLIVAL 138 (254)
T ss_dssp HHHHHHHHHHTTCSEEEEEC-CCSSSCCCHHHHHHHHHHCCSCEEEESCC-CS--H--H--HHHHHHHTTCSEEEEEHHH
T ss_pred HHHHHHHHHHcCCCEEEEec-chhhhccCHHHHHHHHHhcCCCEEECCcC-CC--H--H--HHHHHHHcCCCEEEECccc
Confidence 45666767778999998876 55555666777777777778776544322 11 2 2 4666778999999887542
Q ss_pred --hhHHHHHHHHHHcCCcccceEEEEcCccc
Q 003054 126 --SLGSRIFEKANEIGLMNKGCVWIMTDGMT 154 (852)
Q Consensus 126 --~~~~~i~~~a~~~G~~~~~~vwi~~~~~~ 154 (852)
.+...++..++++||.. .+-..++.
T Consensus 139 l~~~l~~l~~~a~~lGl~~----lvev~~~~ 165 (254)
T 1vc4_A 139 LGELTGAYLEEARRLGLEA----LVEVHTER 165 (254)
T ss_dssp HGGGHHHHHHHHHHHTCEE----EEEECSHH
T ss_pred hHHHHHHHHHHHHHCCCeE----EEEECCHH
Confidence 57788888999999743 24445554
No 404
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=23.34 E-value=2.2e+02 Score=30.00 Aligned_cols=109 Identities=7% Similarity=-0.090 Sum_probs=66.8
Q ss_pred CCceEeccCCchhHHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCC---CCChHHHHHHH
Q 003054 32 SPYFFRGSLNDSSQAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISP---LATDDQIEKEL 108 (852)
Q Consensus 32 ~py~fR~~p~d~~~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~---~~~~~d~~~~l 108 (852)
.||-+...+.... .+.++++.. +++.+++....+. ..+.+.+.|++.|+++... .++. +.+.+.+...+
T Consensus 22 ~~~~I~~G~g~l~---~l~~~l~~~--~rvlIVtd~~v~~--~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~~ 93 (368)
T 3qbe_A 22 PPYPVVIGTGLLD---ELEDLLADR--HKVAVVHQPGLAE--TAEEIRKRLAGKGVDAHRI-EIPDAEAGKDLPVVGFIW 93 (368)
T ss_dssp SCEEEEEESCCHH---HHHHHHTTC--SEEEEEECGGGHH--HHHHHHHHHHHTTCEEEEE-ECCSGGGGGBHHHHHHHH
T ss_pred CCceEEEcCCHHH---HHHHHHHcC--CEEEEEECccHHH--HHHHHHHHHHhcCCcceEE-EeCCCCCCCCHHHHHHHH
Confidence 4666666666433 345555543 8999998655443 3678889999999876432 2321 12334566666
Q ss_pred HHhhcC---CceEEEEEeCh--hhHHHHHHHHHHcCCcccceEEEEcC
Q 003054 109 YKLFTM---QTRVFILHMLP--SLGSRIFEKANEIGLMNKGCVWIMTD 151 (852)
Q Consensus 109 ~~l~~~---~~~viv~~~~~--~~~~~i~~~a~~~G~~~~~~vwi~~~ 151 (852)
..+++. ..|+||..+.+ -|...++......|. .++-|-|.
T Consensus 94 ~~l~~~~~~r~d~IIavGGGsv~D~ak~~Aa~~~rgi---p~i~IPTT 138 (368)
T 3qbe_A 94 EVLGRIGIGRKDALVSLGGGAATDVAGFAAATWLRGV---SIVHLPTT 138 (368)
T ss_dssp HHHHHHTCCTTCEEEEEESHHHHHHHHHHHHHGGGCC---EEEEEECS
T ss_pred HHHHHcCCCCCcEEEEECChHHHHHHHHHHHHhccCC---cEEEECCC
Confidence 666643 46888877665 466777766655564 34445444
No 405
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=23.08 E-value=1.4e+02 Score=30.71 Aligned_cols=66 Identities=6% Similarity=-0.022 Sum_probs=47.7
Q ss_pred CCcEEEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh
Q 003054 57 GWREAVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP 125 (852)
Q Consensus 57 gw~~vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~ 125 (852)
.-+.|+++.. ++.|.....+.+.+++++.|.++.... .+.+.......+..+.+.++|.||+....
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 124 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGN---AWNNLEKQRAYLSMMAQKRVDGLLVMCSE 124 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEE---CTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEe---CCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 3458999884 466778889999999999999876532 12234445566788888899999987543
No 406
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=23.00 E-value=2.4e+02 Score=22.64 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=38.5
Q ss_pred ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChh--hHHHHHHHHHHcC
Q 003054 73 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS--LGSRIFEKANEIG 139 (852)
Q Consensus 73 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~--~~~~i~~~a~~~G 139 (852)
...+.+.+.++..|.++... .+. ...+..++...+|++++....+ ++..++++.++..
T Consensus 12 ~~~~~l~~~l~~~g~~v~~~------~~~---~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~ 71 (119)
T 2j48_A 12 EAATVVCEMLTAAGFKVIWL------VDG---STALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQ 71 (119)
T ss_dssp HHHHHHHHHHHHTTCEEEEE------SCH---HHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCcEEEEe------cCH---HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcc
Confidence 45667788888888876421 112 3344455556899999986543 5678888888764
No 407
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=22.61 E-value=60 Score=28.82 Aligned_cols=35 Identities=20% Similarity=0.482 Sum_probs=27.7
Q ss_pred CceEEEEEeChhhHHHHHHHHHHcCCcccceEEEEcCc
Q 003054 115 QTRVFILHMLPSLGSRIFEKANEIGLMNKGCVWIMTDG 152 (852)
Q Consensus 115 ~~~viv~~~~~~~~~~i~~~a~~~G~~~~~~vwi~~~~ 152 (852)
.+|+++++..++....+++++.+.|. +.+|+.+..
T Consensus 69 ~vDlvii~vp~~~v~~v~~~~~~~g~---~~i~~~~~~ 103 (138)
T 1y81_A 69 DVDVIVFVVPPKVGLQVAKEAVEAGF---KKLWFQPGA 103 (138)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTC---CEEEECTTS
T ss_pred CCCEEEEEeCHHHHHHHHHHHHHcCC---CEEEEcCcc
Confidence 68999999888888899988888875 347776644
No 408
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=22.51 E-value=3.8e+02 Score=26.02 Aligned_cols=76 Identities=9% Similarity=0.018 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCcEEEEEEEe---CCcccccHHHHHHHHHhCCceeeeee-ecCCCCChH----HHHHHHHHhhcCCceE
Q 003054 47 GAITAIIKAFGWREAVPIYVD---NQYGEEMIPSLTDALQAIDTRVPYRS-VISPLATDD----QIEKELYKLFTMQTRV 118 (852)
Q Consensus 47 ~aia~~l~~~gw~~vaii~~d---~~~G~~~~~~l~~~l~~~g~~v~~~~-~~~~~~~~~----d~~~~l~~l~~~~~~v 118 (852)
....+.+++.|.+-|-+.... ........+.+++.+++.|+++.... .++.+..+. .+...+...+..+++.
T Consensus 22 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~ 101 (272)
T 2q02_A 22 EAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGVGARA 101 (272)
T ss_dssp HHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEEEEEETTTTSCCHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHcCCCEEEeeccccccccccccCHHHHHHHHHHcCCeEEechhhhccCCcHHHHHHHHHHHHHHHHHhCCCE
Confidence 556677788999988775311 11123568889999999999985443 333332221 2333333344455555
Q ss_pred EEEE
Q 003054 119 FILH 122 (852)
Q Consensus 119 iv~~ 122 (852)
|+++
T Consensus 102 v~~~ 105 (272)
T 2q02_A 102 LVLC 105 (272)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5554
No 409
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=22.18 E-value=1.4e+02 Score=25.42 Aligned_cols=58 Identities=9% Similarity=-0.018 Sum_probs=37.2
Q ss_pred ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh---hhHHHHHHHHHHc
Q 003054 73 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP---SLGSRIFEKANEI 138 (852)
Q Consensus 73 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~---~~~~~i~~~a~~~ 138 (852)
...+.+.+.|++.|.++.... .+ ....+..+.+..+|+|++.... .++..++++.++.
T Consensus 20 ~~~~~l~~~L~~~g~~v~~~~-----~~---~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~ 80 (140)
T 3cg0_A 20 LAAATLRIQLESLGYDVLGVF-----DN---GEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAG 80 (140)
T ss_dssp HHHHHHHHHHHHHTCEEEEEE-----SS---HHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeeEEEE-----CC---HHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhC
Confidence 456677777887788764321 11 2334455555679999998653 3567788888776
No 410
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=22.14 E-value=2.3e+02 Score=23.64 Aligned_cols=60 Identities=12% Similarity=0.144 Sum_probs=39.6
Q ss_pred ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh--hhHHHHHHHHHHcCC
Q 003054 73 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP--SLGSRIFEKANEIGL 140 (852)
Q Consensus 73 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~--~~~~~i~~~a~~~G~ 140 (852)
...+.+.+.|++.|..+.... . + ..+ .+..+++..||+|++.... .++..++++.++.+-
T Consensus 12 ~~~~~l~~~L~~~g~~v~~~~--~-~--~~~---a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~ 73 (134)
T 3f6c_A 12 LAIAAIRNLLIKNDIEILAEL--T-E--GGS---AVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQY 73 (134)
T ss_dssp HHHHHHHHHHHHTTEEEEEEE--S-S--STT---HHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhCCcEEEEEc--C-C--HHH---HHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCC
Confidence 356778888888887664222 1 1 112 3445556789999998653 457888888888754
No 411
>3irs_A Uncharacterized protein BB4693; structural genomics, PSI-2, protein structure initiative, TI protein; HET: GOL; 1.76A {Bordetella bronchiseptica} PDB: 3k4w_A
Probab=22.00 E-value=3.7e+02 Score=26.87 Aligned_cols=95 Identities=11% Similarity=0.096 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHcCCcEEEEEEEe-CCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEe
Q 003054 45 QAGAITAIIKAFGWREAVPIYVD-NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHM 123 (852)
Q Consensus 45 ~~~aia~~l~~~gw~~vaii~~d-~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~ 123 (852)
..+.+.+.++..|..+.+++..+ ..+++...+.+.+..++...++.....+++. ...+...+|.+++..+.+.|-+..
T Consensus 48 ~~e~~l~~md~~GV~~~V~~~~~~~~~~~~~N~~~~~~~~~~p~r~~~~~~v~p~-~~~~a~~eL~~~~~~g~~Gi~~~~ 126 (291)
T 3irs_A 48 SLELMFEEMAAAGIEQGVCVGRNSSVLGSVSNADVAAVAKAYPDKFHPVGSIEAA-TRKEAMAQMQEILDLGIRIVNLEP 126 (291)
T ss_dssp CHHHHHHHHHHTTCCEEEEECCEETTTEECCHHHHHHHHHHSTTTEEEEEECCCS-SHHHHHHHHHHHHHTTCCCEEECG
T ss_pred CHHHHHHHHHHCCCCEEEEcCCCccccccccHHHHHHHHHHCCCcEEEEEecCcc-CHHHHHHHHHHHHhCCCeEEEEeC
Confidence 44566677788999998887644 2456566777777777776566666667654 224566778777777777776552
Q ss_pred ---------ChhhHHHHHHHHHHcCC
Q 003054 124 ---------LPSLGSRIFEKANEIGL 140 (852)
Q Consensus 124 ---------~~~~~~~i~~~a~~~G~ 140 (852)
..+....+++.|.+.|+
T Consensus 127 ~~~~~~~~~~d~~~~~~~~~a~e~gl 152 (291)
T 3irs_A 127 GVWATPMHVDDRRLYPLYAFCEDNGI 152 (291)
T ss_dssp GGSSSCCCTTCGGGHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCC
Confidence 12346889999999998
No 412
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=21.99 E-value=2.3e+02 Score=27.18 Aligned_cols=43 Identities=14% Similarity=0.037 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceee
Q 003054 45 QAGAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVP 90 (852)
Q Consensus 45 ~~~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~ 90 (852)
..++.++.+...+-++|+++.. .+... ...+++.+++.|+++.
T Consensus 102 i~~a~~~~~~~~~~~rigvlaT--~~T~~-~~~y~~~l~~~g~~v~ 144 (226)
T 2zsk_A 102 IIDAVAEEILKRGVRKVLLLGT--KTTMT-ADFYIKTLEEKGLEVV 144 (226)
T ss_dssp HHHHHHHHHHHTTCCEEEEESS--TTTTS-CHHHHHHHHTTTCEEE
T ss_pred cHHHHHHHHHHcCCCeEEEEeC--HHHHh-hhHHHHHHHHCCCEEE
Confidence 3456666665567899999973 33322 3467888888898764
No 413
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=21.88 E-value=37 Score=36.11 Aligned_cols=94 Identities=12% Similarity=0.041 Sum_probs=55.8
Q ss_pred HHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh--
Q 003054 48 AITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP-- 125 (852)
Q Consensus 48 aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~-- 125 (852)
.+.++++.+| +++.+|+....+.....+.+.+.|++.|..+. .+....+.+.+...+..+++ ++|+||-.+.+
T Consensus 32 ~l~~~l~~~g-~~~liVtd~~~~~~~~~~~v~~~L~~~g~~~~---~~~ge~~~~~v~~~~~~~~~-~~d~IIavGGGsv 106 (376)
T 1kq3_A 32 ILEEELSRFG-ERAFVVIDDFVDKNVLGENFFSSFTKVRVNKQ---IFGGECSDEEIERLSGLVEE-ETDVVVGIGGGKT 106 (376)
T ss_dssp GHHHHHHTTC-SEEEEEECHHHHHHTTCTTGGGGCSSSEEEEE---ECCSSCBHHHHHHHHTTCCT-TCCEEEEEESHHH
T ss_pred HHHHHHHHcC-CeEEEEECccHHhhccHHHHHHHHHHcCCeEE---EeCCCCCHHHHHHHHHHHhc-CCCEEEEeCCcHH
Confidence 4567777888 99999985443333334555666666663322 23323334566666666777 99999977654
Q ss_pred hhHHHHHHHHHHcCCcccceEEEEcC
Q 003054 126 SLGSRIFEKANEIGLMNKGCVWIMTD 151 (852)
Q Consensus 126 ~~~~~i~~~a~~~G~~~~~~vwi~~~ 151 (852)
-|+.+++.. ..|+ .++-|-|.
T Consensus 107 ~D~aK~iA~--~~~~---p~i~IPTT 127 (376)
T 1kq3_A 107 LDTAKAVAY--KLKK---PVVIVPTI 127 (376)
T ss_dssp HHHHHHHHH--HTTC---CEEEEESS
T ss_pred HHHHHHHHH--hcCC---CEEEecCc
Confidence 466666653 2343 34555544
No 414
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=21.67 E-value=1.2e+02 Score=31.38 Aligned_cols=101 Identities=9% Similarity=-0.005 Sum_probs=62.4
Q ss_pred CCcCCHHHHHhcCCeEEEEeCchHHHHHHhcCCCCcceeecCCHhHHHHHhhcccccCceeEEEechhHHHHHH-hhcCC
Q 003054 568 PTITDVKMLIKRGDNVGYQKGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSVNGGIAAAFDEIPYMKLLI-GQYCS 646 (852)
Q Consensus 568 ~~i~sl~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~-~~~~~ 646 (852)
.+|++++||. |++|-+..+......++.++..+. . -...|.+.+|++|. +|+.......+...- .+-++
T Consensus 144 kpI~s~~Dlk--GlKiR~~~~~~~~~~~~alGa~pv---~-m~~~Evy~ALq~Gv----vDg~e~~~~~~~~~~~~Ev~k 213 (326)
T 3fxb_A 144 TPVTTCSDLD--EVKFRVMTNPLLVESYKAFGATPT---P-LPWGEVYGGLQTNV----IQGQENPTFFLYSTKIYEVTD 213 (326)
T ss_dssp SCCSSGGGST--TCEEEECSCHHHHHHHHHHTSEEE---E-CCGGGHHHHHHTTS----CCEEEEEHHHHHHTTGGGSCS
T ss_pred CCCCChHHhC--CCEEEecCCHHHHHHHHHcCCeee---e-cCHHHHHHHHHcCC----cceEecCHHHHHhccHhhhcc
Confidence 5799999997 999888766667788888776432 2 24567899999999 999887654432111 11244
Q ss_pred ceEeecccccccceEEEecCC--CCchhhHHHHHHh
Q 003054 647 KYAMIEPKFKTAGFGFVFPLH--SPLVHDVSKAILN 680 (852)
Q Consensus 647 ~~~~v~~~~~~~~~~~~~~k~--spl~~~in~~il~ 680 (852)
+...... ......+++++. .-|-+...++|..
T Consensus 214 -y~~~~~~-~~~~~~~~~n~~~w~~L~~e~q~~i~~ 247 (326)
T 3fxb_A 214 -YITYAGH-NNFTTAVMANKDFYDGLSAEDQQLVQN 247 (326)
T ss_dssp -EEEECCC-CEEEEEEEEEHHHHHHSCHHHHHHHHH
T ss_pred -eeEEcCc-cccceEEEEeHHHHhcCCHHHHHHHHH
Confidence 3333222 233456777765 1244444444444
No 415
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=21.62 E-value=6.5e+02 Score=25.59 Aligned_cols=60 Identities=15% Similarity=0.097 Sum_probs=40.9
Q ss_pred CCHHHHHhcCCeEEEEeCchHHHH-HHhcCCCCcceeecC-CHhHHHHHhhcccccCceeEEEechhHHH
Q 003054 571 TDVKMLIKRGDNVGYQKGSFVLGI-LKQLGFDERKLVVYN-SPEDCHELFQKGSVNGGIAAAFDEIPYMK 638 (852)
Q Consensus 571 ~sl~dL~~~~~~vg~~~~s~~~~~-l~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~~g~~a~~~~~~~~~ 638 (852)
.+++||- .|-+||+ .|.-+.. |+.. +|..+++... +.+.-+..|..|. .+|++.-..-++
T Consensus 114 ~~l~~LP-~Ga~VGT--SSlRR~aQL~~~-rPdl~i~~lRGNV~TRL~KL~~g~----~DaiiLA~AGL~ 175 (313)
T 1gtk_A 114 DSLDALP-AGSIVGT--SSLRRQCQLAER-RPDLIIRSLRGNVGTRLSKLDNGE----YDAIILAVAGLK 175 (313)
T ss_dssp SSGGGCC-TTCEEEC--CCHHHHHHHHHH-CTTSEEECCCSCHHHHHHHHHTTS----CSEEEEEHHHHH
T ss_pred CChhhCC-CCCEEec--CCHHHHHHHHHH-CCCCEEEeCCCCHHHHHHHhhCCC----CCEEEHhhhHHH
Confidence 4688885 4557776 4443332 3333 6766776554 8899999999999 899988755443
No 416
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=21.54 E-value=1.7e+02 Score=25.02 Aligned_cols=58 Identities=9% Similarity=0.029 Sum_probs=39.7
Q ss_pred ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEe-ChhhHHHHHHHHHHcC
Q 003054 73 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHM-LPSLGSRIFEKANEIG 139 (852)
Q Consensus 73 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~-~~~~~~~i~~~a~~~G 139 (852)
.....+.+.|++.|.+|.. . .+....+..++...+|+|++.. ...++..++++.++..
T Consensus 15 ~~~~~l~~~L~~~g~~v~~---~------~~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~ 73 (142)
T 2qxy_A 15 ITFLAVKNALEKDGFNVIW---A------KNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEF 73 (142)
T ss_dssp HHHHHHHHHHGGGTCEEEE---E------SSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCEEEE---E------CCHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHC
Confidence 4567788888888887642 1 1234456677778899999987 2235677888888764
No 417
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=21.53 E-value=1.2e+02 Score=26.11 Aligned_cols=56 Identities=9% Similarity=0.051 Sum_probs=37.2
Q ss_pred ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh--hhHHHHHHHHHH
Q 003054 73 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP--SLGSRIFEKANE 137 (852)
Q Consensus 73 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~--~~~~~i~~~a~~ 137 (852)
.....+.+.|++.|.+|.. . .+ ....+..++...+|+|++.... .++..++++.++
T Consensus 19 ~~~~~l~~~L~~~g~~v~~---~---~~---~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~ 76 (147)
T 2zay_A 19 PALAASISALSQEGFDIIQ---C---GN---AIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKK 76 (147)
T ss_dssp GGGHHHHHHHHHHTEEEEE---E---SS---HHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCeEEE---e---CC---HHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHc
Confidence 4567777788888876642 1 11 2334555556689999998653 357788888887
No 418
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=21.52 E-value=1.9e+02 Score=24.68 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChh--hHHHHHHHHHHcC
Q 003054 73 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS--LGSRIFEKANEIG 139 (852)
Q Consensus 73 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~--~~~~i~~~a~~~G 139 (852)
.....+...|+..|..+.. .. + ....+..+....+|+|++....+ ++..++++.++..
T Consensus 14 ~~~~~l~~~L~~~g~~v~~---~~---~---~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 73 (138)
T 3c3m_A 14 MIVDVFVTMLERGGYRPIT---AF---S---GEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDP 73 (138)
T ss_dssp HHHHHHHHHHHHTTCEEEE---ES---S---HHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCceEEE---eC---C---HHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCc
Confidence 3556777888888877642 11 1 23345556667899999986543 5778888888753
No 419
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=21.48 E-value=1.1e+02 Score=30.62 Aligned_cols=65 Identities=8% Similarity=0.022 Sum_probs=46.0
Q ss_pred cEEEEEE-EeCCcccccHHHHHHHHHhCCc---eeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeC
Q 003054 59 REAVPIY-VDNQYGEEMIPSLTDALQAIDT---RVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHML 124 (852)
Q Consensus 59 ~~vaii~-~d~~~G~~~~~~l~~~l~~~g~---~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~ 124 (852)
++|+++- .+++|-....+.+.+.+.+.|. ++..... ..+.+.+.-...+.++.+.++|.||+.+.
T Consensus 3 ~~Igvi~~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~-~~~~~~~~~~~~~~~l~~~~vDgII~~~~ 71 (295)
T 3lft_A 3 AKIGVLQFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFM-NSEGDQSKVATMSKQLVANGNDLVVGIAT 71 (295)
T ss_dssp EEEEEEECSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEE-ECTTCHHHHHHHHHHHTTSSCSEEEEESH
T ss_pred eEEEEEEccCChhHHHHHHHHHHHHHHcCCCCCceEEEEe-cCCCCHHHHHHHHHHHHhcCCCEEEECCc
Confidence 5678773 3466778889999999999998 6443211 22233455667788899999999998753
No 420
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=21.36 E-value=2e+02 Score=29.14 Aligned_cols=80 Identities=10% Similarity=0.059 Sum_probs=49.7
Q ss_pred EEEEEEEeCC----cccccHHHHHHHHHh-------CCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhH
Q 003054 60 EAVPIYVDNQ----YGEEMIPSLTDALQA-------IDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLG 128 (852)
Q Consensus 60 ~vaii~~d~~----~G~~~~~~l~~~l~~-------~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~ 128 (852)
+|+++..... +|......+..++++ .|.++..... ....+...-...+.++.+.+.++||........
T Consensus 4 ~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~-d~~~~~~~~~~~~~~l~~~~v~~iig~~~s~~~ 82 (346)
T 1usg_A 4 KVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEY-DDACDPKQAVAVANKIVNDGIKYVIGHLCSSST 82 (346)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEE-ECTTCHHHHHHHHHHHHHTTCCEEECCSSHHHH
T ss_pred EEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEe-CCCCCHHHHHHHHHHHHhCCCCEEEcCCCcHHH
Confidence 5777775532 577777888888877 4554433221 112233444556677777889998866555556
Q ss_pred HHHHHHHHHcCC
Q 003054 129 SRIFEKANEIGL 140 (852)
Q Consensus 129 ~~i~~~a~~~G~ 140 (852)
..+...+.+.|+
T Consensus 83 ~~~~~~~~~~~i 94 (346)
T 1usg_A 83 QPASDIYEDEGI 94 (346)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHCCC
Confidence 667777777775
No 421
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=21.09 E-value=2.2e+02 Score=27.33 Aligned_cols=85 Identities=15% Similarity=0.050 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcCC-cEEEEEEEeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHH-HHHHhhcCCceEEEEE
Q 003054 45 QAGAITAIIKAFGW-REAVPIYVDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEK-ELYKLFTMQTRVFILH 122 (852)
Q Consensus 45 ~~~aia~~l~~~gw-~~vaii~~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~-~l~~l~~~~~~viv~~ 122 (852)
-.+++.+..+.-.. -+|+++.+|..- ....+..++.|+.+.....-.. .+..++.. .+..|++.++|++++.
T Consensus 15 nl~ali~~~~~~~l~~eI~~Visn~~~-----a~v~~~A~~~gIp~~~~~~~~~-~~r~~~d~~~~~~l~~~~~Dliv~a 88 (211)
T 3p9x_A 15 NAEAIIQSQKAGQLPCEVALLITDKPG-----AKVVERVKVHEIPVCALDPKTY-PSKEAYEIEVVQQLKEKQIDFVVLA 88 (211)
T ss_dssp HHHHHHHHHHTTCCSSEEEEEEESCSS-----SHHHHHHHTTTCCEEECCGGGS-SSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHcCCCCcEEEEEEECCCC-----cHHHHHHHHcCCCEEEeChhhc-CchhhhHHHHHHHHHhcCCCEEEEe
Confidence 34566665543222 367777766432 1345667788988643222111 12344543 4577888999999999
Q ss_pred eChhhH-HHHHHHH
Q 003054 123 MLPSLG-SRIFEKA 135 (852)
Q Consensus 123 ~~~~~~-~~i~~~a 135 (852)
++..-. ..+++..
T Consensus 89 gy~~Il~~~~l~~~ 102 (211)
T 3p9x_A 89 GYMRLVGPTLLGAY 102 (211)
T ss_dssp SCCSCCCHHHHHHH
T ss_pred CchhhcCHHHHhhc
Confidence 987554 4445443
No 422
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=21.05 E-value=89 Score=27.64 Aligned_cols=84 Identities=11% Similarity=0.175 Sum_probs=0.0
Q ss_pred cEEEEEE-EeCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEe---------ChhhH
Q 003054 59 REAVPIY-VDNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHM---------LPSLG 128 (852)
Q Consensus 59 ~~vaii~-~d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~---------~~~~~ 128 (852)
+++.|+| +.+...+..++.+.+.+++.|.++.....-... ..++.. +.|.|++.+ .++.+
T Consensus 2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~--~~~l~~--------~~d~ii~g~pty~~~~G~~p~~~ 71 (148)
T 3f6r_A 2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADAS--AENLAD--------GYDAVLFGCSAWGMEDLEMQDDF 71 (148)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBC--CTTTTT--------TCSEEEEEECEECSSSCEECHHH
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCC--HhHhcc--------cCCEEEEEecccCCCCCCCcHHH
Q ss_pred HHHHHHHHHcCCcccceEEEEcCc
Q 003054 129 SRIFEKANEIGLMNKGCVWIMTDG 152 (852)
Q Consensus 129 ~~i~~~a~~~G~~~~~~vwi~~~~ 152 (852)
..+++......+..+.+..++++.
T Consensus 72 ~~fl~~l~~~~l~~k~~~vfg~G~ 95 (148)
T 3f6r_A 72 LSLFEEFDRIGLAGRKVAAFASGD 95 (148)
T ss_dssp HHHHTTGGGTCCTTCEEEEEEEEC
T ss_pred HHHHHHhhccCCCCCEEEEEEeCC
No 423
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=20.85 E-value=2.4e+02 Score=23.72 Aligned_cols=58 Identities=12% Similarity=0.036 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCC-ceEEEEEeC--hhhHHHHHHHHHHcC
Q 003054 73 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQ-TRVFILHML--PSLGSRIFEKANEIG 139 (852)
Q Consensus 73 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~-~~viv~~~~--~~~~~~i~~~a~~~G 139 (852)
.....+.+.|++.|.++... .+ ....+..+.... +|+|++... ..++..+++++++.+
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~------~~---~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~ 78 (136)
T 3hdv_A 18 VNREALILYLKSRGIDAVGA------DG---AEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASE 78 (136)
T ss_dssp HHHHHHHHHHHHTTCCEEEE------SS---HHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHcCceEEEe------CC---HHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcC
Confidence 35677788888888776431 11 233444555555 899998865 345788888888874
No 424
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=20.57 E-value=1.4e+02 Score=25.34 Aligned_cols=58 Identities=12% Similarity=-0.027 Sum_probs=38.9
Q ss_pred ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChh-------hHHHHHHHHHHcC
Q 003054 73 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS-------LGSRIFEKANEIG 139 (852)
Q Consensus 73 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~-------~~~~i~~~a~~~G 139 (852)
.....+...|++.|.+|... .+ ....+..++...+|+|++....+ ++..+++++++..
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~------~~---~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~ 78 (140)
T 2qr3_A 14 GVLTAVQLLLKNHFSKVITL------SS---PVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQY 78 (140)
T ss_dssp HHHHHHHHHHTTTSSEEEEE------CC---HHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCcEEEEe------CC---HHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhC
Confidence 45667788888888876421 11 23345556667899999986533 5677888888764
No 425
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=20.42 E-value=2.3e+02 Score=23.07 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=38.1
Q ss_pred ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChh--hHHHHHHHHHHcC
Q 003054 73 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPS--LGSRIFEKANEIG 139 (852)
Q Consensus 73 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~--~~~~i~~~a~~~G 139 (852)
.....+...++..|.+++... .+ ....+..+....+|++++....+ ++..++++.++.+
T Consensus 13 ~~~~~l~~~l~~~g~~vv~~~-----~~---~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~ 73 (120)
T 1tmy_A 13 FMRMMLKDIITKAGYEVAGEA-----TN---GREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKID 73 (120)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE-----SS---HHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcCcEEEEEE-----CC---HHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhC
Confidence 456677788888888753321 11 23344455556799999886543 5677888888765
No 426
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=20.27 E-value=1e+02 Score=30.72 Aligned_cols=64 Identities=16% Similarity=0.166 Sum_probs=46.2
Q ss_pred cEEEEEEEe-CCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeCh
Q 003054 59 REAVPIYVD-NQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLP 125 (852)
Q Consensus 59 ~~vaii~~d-~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~ 125 (852)
++|+++..+ ++|.....+.+.+++++.|.++.... .+.+.......+..+.+.++|.||+....
T Consensus 9 ~~Igvi~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 9 NIIAFIVPDQNPFFTEVLTEISHECQKHHLHVAVAS---SEENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHHGGGTCEEEEEE---CTTCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CEEEEEECCCCchHHHHHHHHHHHHHHCCCEEEEEe---CCCCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 578888753 56778888999999999999876532 12233445567778888899999887543
No 427
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=20.21 E-value=35 Score=33.94 Aligned_cols=76 Identities=9% Similarity=0.003 Sum_probs=39.3
Q ss_pred EEEEEE--eCCcccccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhcCCceEEEEEeChhhHHHHHHHHHHc
Q 003054 61 AVPIYV--DNQYGEEMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFILHMLPSLGSRIFEKANEI 138 (852)
Q Consensus 61 vaii~~--d~~~G~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~viv~~~~~~~~~~i~~~a~~~ 138 (852)
|+++.. +++|.....+.+.+++++.|.++..... ..+.......+..+.+.++|.||+....... ..++.+++.
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~~~~~ 77 (276)
T 2h0a_A 2 VSVLLPFVATEFYRRLVEGIEGVLLEQRYDLALFPI---LSLARLKRYLENTTLAYLTDGLILASYDLTE-RFEEGRLPT 77 (276)
T ss_dssp EEEEECCSCCHHHHHHHHHHHHHHGGGTCEEEECCC---CSCCCCC---------CCCSEEEEESCCCC-------CCSC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---CCchhhHHHHHHHHHhCCCCEEEEecCCCCH-HHHHHHhhc
Confidence 566663 4667788889999999999988754321 1112223445667777889999887654332 345555555
Q ss_pred CC
Q 003054 139 GL 140 (852)
Q Consensus 139 G~ 140 (852)
|+
T Consensus 78 ~i 79 (276)
T 2h0a_A 78 ER 79 (276)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 428
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=20.20 E-value=81 Score=33.33 Aligned_cols=77 Identities=9% Similarity=0.014 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCcEEEEEEEeCCcccccHHHHHHH--------------------HHhCCc----eeeeeeecCCCCChH
Q 003054 47 GAITAIIKAFGWREAVPIYVDNQYGEEMIPSLTDA--------------------LQAIDT----RVPYRSVISPLATDD 102 (852)
Q Consensus 47 ~aia~~l~~~gw~~vaii~~d~~~G~~~~~~l~~~--------------------l~~~g~----~v~~~~~~~~~~~~~ 102 (852)
-|+..+++++|.+||+||--|-..|.+..+.|.+. ..+.|. --.....++.+.++.
T Consensus 160 iAa~~l~~~~g~~RV~IvD~DvHHGnGTq~iF~~d~~Vl~~SiH~~~~yP~~tG~~~e~G~g~g~g~~vNvPL~~g~~d~ 239 (369)
T 1zz1_A 160 VAAGYARAVLGMERVAILDWDVHHGNGTQDIWWNDPSVLTISLHQHLCFPPDSGYSTERGAGNGHGYNINVPLPPGSGNA 239 (369)
T ss_dssp HHHHHHHHTSCCSCEEEEECSSSCCHHHHHHTTTCTTEEEEEEEETTSSSTTCCCTTCCCCGGGTTCEEEEEECTTCBHH
T ss_pred HHHHHHHHhcCCCeEEEEecCCCCchhhhHHhcCCCCEEEEeccCCCCCCCCCCcccccCCCCCCceEEeeecCCCCCHH
Confidence 33444456779999999988888888877776541 001110 012234456666777
Q ss_pred HHHHHHHH-----hhcCCceEEEEEe
Q 003054 103 QIEKELYK-----LFTMQTRVFILHM 123 (852)
Q Consensus 103 d~~~~l~~-----l~~~~~~viv~~~ 123 (852)
+|...+.+ +++.+||+||+.+
T Consensus 240 ~yl~~~~~~v~p~l~~f~PdlIvvsa 265 (369)
T 1zz1_A 240 AYLHAMDQVVLPALRAYRPQLIIVGS 265 (369)
T ss_dssp HHHHHHHHTHHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 77766554 3466788887754
No 429
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=20.10 E-value=3.9e+02 Score=22.49 Aligned_cols=57 Identities=11% Similarity=0.034 Sum_probs=38.7
Q ss_pred ccHHHHHHHHHhCCceeeeeeecCCCCChHHHHHHHHHhhc-CCceEEEEEeCh---hhHHHHHHHHHHc
Q 003054 73 EMIPSLTDALQAIDTRVPYRSVISPLATDDQIEKELYKLFT-MQTRVFILHMLP---SLGSRIFEKANEI 138 (852)
Q Consensus 73 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~viv~~~~~---~~~~~i~~~a~~~ 138 (852)
.....+.+.|++.|.+|... . +....+..+++ ..+|+|++.... .++..++++.++.
T Consensus 16 ~~~~~l~~~L~~~g~~v~~~------~---~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~ 76 (140)
T 3h5i_A 16 FQAKTIANILNKYGYTVEIA------L---TGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQI 76 (140)
T ss_dssp HHHHHHHHHHHHTTCEEEEE------S---SHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEe------c---ChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhC
Confidence 45677888888888876421 1 13345556665 689999998653 4577888888775
Done!