Query 003055
Match_columns 852
No_of_seqs 205 out of 1156
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 16:08:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2099 Glycogen phosphorylase 100.0 3E-267 7E-272 2163.2 48.7 738 1-852 88-835 (843)
2 TIGR02093 P_ylase glycogen/sta 100.0 1E-249 3E-254 2125.6 64.0 730 1-846 57-794 (794)
3 PRK14985 maltodextrin phosphor 100.0 2E-248 4E-253 2114.0 62.9 726 1-847 66-797 (798)
4 cd04300 GT1_Glycogen_Phosphory 100.0 2E-247 4E-252 2114.0 64.1 730 1-846 60-797 (797)
5 PRK14986 glycogen phosphorylas 100.0 7E-246 2E-250 2098.9 65.9 733 1-851 77-815 (815)
6 PF00343 Phosphorylase: Carboh 100.0 8E-242 2E-246 2044.2 44.6 707 25-848 1-713 (713)
7 COG0058 GlgP Glucan phosphoryl 100.0 3E-201 6E-206 1712.2 44.6 673 1-848 69-750 (750)
8 cd04299 GT1_Glycogen_Phosphory 100.0 3E-135 6E-140 1184.1 41.8 569 31-844 91-688 (778)
9 TIGR02094 more_P_ylases alpha- 100.0 4E-131 8E-136 1127.9 41.6 568 31-844 4-599 (601)
10 cd03791 GT1_Glycogen_synthase_ 99.8 3.8E-18 8.2E-23 187.8 26.1 267 450-842 199-473 (476)
11 TIGR02095 glgA glycogen/starch 99.7 1.7E-16 3.7E-21 176.2 24.8 265 451-841 195-468 (473)
12 PRK14098 glycogen synthase; Pr 99.6 4.7E-14 1E-18 159.6 24.8 268 450-844 209-483 (489)
13 PRK00654 glgA glycogen synthas 99.6 2E-14 4.4E-19 160.3 18.8 264 451-841 187-458 (466)
14 PLN02939 transferase, transfer 99.4 5.9E-11 1.3E-15 142.9 27.8 268 450-841 682-962 (977)
15 PRK14099 glycogen synthase; Pr 99.3 4.5E-11 9.8E-16 135.5 18.9 265 451-841 199-474 (485)
16 PLN02316 synthase/transferase 98.7 7.5E-07 1.6E-11 109.4 20.5 176 489-721 786-961 (1036)
17 COG0297 GlgA Glycogen synthase 97.8 0.00021 4.6E-09 82.5 13.8 271 450-841 197-473 (487)
18 cd03821 GT1_Bme6_like This fam 97.2 0.0037 8.1E-08 63.8 11.4 132 571-731 199-330 (375)
19 TIGR02149 glgA_Coryne glycogen 97.1 0.0051 1.1E-07 65.8 12.4 133 571-731 197-330 (388)
20 cd03793 GT1_Glycogen_synthase_ 97.1 0.015 3.2E-07 68.9 16.6 203 457-711 222-506 (590)
21 TIGR02470 sucr_synth sucrose s 97.1 0.0069 1.5E-07 73.8 14.3 146 565-731 540-693 (784)
22 PLN00142 sucrose synthase 97.1 0.0056 1.2E-07 74.7 13.5 145 566-731 564-716 (815)
23 TIGR03449 mycothiol_MshA UDP-N 97.1 0.0093 2E-07 64.8 13.9 136 571-730 215-351 (405)
24 cd01635 Glycosyltransferase_GT 97.0 0.0019 4E-08 62.0 7.3 120 580-729 109-229 (229)
25 PF00534 Glycos_transf_1: Glyc 96.9 0.0023 5E-08 61.1 7.0 133 570-731 10-142 (172)
26 cd03808 GT1_cap1E_like This fa 96.9 0.007 1.5E-07 61.2 10.6 129 572-731 185-313 (359)
27 cd03813 GT1_like_3 This family 96.8 0.013 2.7E-07 66.7 13.0 123 572-721 290-412 (475)
28 cd03805 GT1_ALG2_like This fam 96.8 0.0085 1.8E-07 64.3 10.8 147 571-735 207-353 (392)
29 cd03792 GT1_Trehalose_phosphor 96.7 0.036 7.9E-07 59.9 14.8 134 571-729 186-321 (372)
30 cd03800 GT1_Sucrose_synthase T 96.7 0.021 4.6E-07 60.7 12.5 134 572-730 217-351 (398)
31 cd03818 GT1_ExpC_like This fam 96.5 0.02 4.2E-07 62.8 11.4 137 571-730 207-349 (396)
32 cd03807 GT1_WbnK_like This fam 96.5 0.033 7.2E-07 56.7 12.1 127 571-730 189-315 (365)
33 cd03796 GT1_PIG-A_like This fa 96.5 0.018 4E-07 63.1 10.8 134 572-736 190-323 (398)
34 cd04962 GT1_like_5 This family 96.4 0.04 8.7E-07 58.3 12.6 127 571-730 193-319 (371)
35 cd03822 GT1_ecORF704_like This 96.3 0.056 1.2E-06 55.9 13.0 134 572-730 182-317 (366)
36 TIGR02472 sucr_P_syn_N sucrose 96.3 0.047 1E-06 61.4 13.4 138 572-730 245-389 (439)
37 PRK15427 colanic acid biosynth 96.3 0.061 1.3E-06 60.2 14.1 128 575-730 222-353 (406)
38 cd03809 GT1_mtfB_like This fam 96.3 0.049 1.1E-06 56.3 12.1 120 572-718 192-311 (365)
39 TIGR02468 sucrsPsyn_pln sucros 96.2 0.03 6.4E-07 70.2 11.8 188 571-847 475-672 (1050)
40 cd03801 GT1_YqgM_like This fam 96.2 0.086 1.9E-06 53.1 12.8 130 572-731 196-325 (374)
41 PRK15484 lipopolysaccharide 1, 96.0 0.096 2.1E-06 57.8 13.5 136 571-729 189-325 (380)
42 PRK15490 Vi polysaccharide bio 95.8 0.09 1.9E-06 62.4 12.9 128 572-731 395-522 (578)
43 TIGR03088 stp2 sugar transfera 95.8 0.13 2.8E-06 55.3 12.9 131 572-730 191-321 (374)
44 cd04949 GT1_gtfA_like This fam 95.7 0.036 7.8E-07 59.3 8.4 123 576-730 205-328 (372)
45 cd03795 GT1_like_4 This family 95.7 0.033 7.2E-07 58.0 7.8 128 573-731 189-316 (357)
46 cd05844 GT1_like_7 Glycosyltra 95.6 0.17 3.8E-06 53.4 12.7 128 575-730 188-319 (367)
47 PLN02949 transferase, transfer 95.4 0.19 4.1E-06 58.0 13.3 135 575-729 268-406 (463)
48 cd03819 GT1_WavL_like This fam 95.3 0.062 1.4E-06 56.2 8.4 133 571-730 181-313 (355)
49 cd03794 GT1_wbuB_like This fam 95.3 0.14 3.1E-06 52.4 10.7 129 572-730 217-348 (394)
50 cd03811 GT1_WabH_like This fam 94.9 0.045 9.8E-07 55.1 5.9 130 571-732 185-314 (353)
51 cd03799 GT1_amsK_like This is 94.9 0.055 1.2E-06 56.3 6.7 131 573-731 177-311 (355)
52 cd03817 GT1_UGDG_like This fam 94.9 0.11 2.5E-06 53.2 8.7 132 571-732 198-329 (374)
53 cd03804 GT1_wbaZ_like This fam 94.6 0.061 1.3E-06 57.3 6.0 114 577-731 197-310 (351)
54 cd03825 GT1_wcfI_like This fam 94.5 0.36 7.7E-06 50.6 11.3 124 571-730 187-313 (365)
55 TIGR02918 accessory Sec system 94.0 0.55 1.2E-05 54.8 12.7 122 576-730 320-442 (500)
56 PLN02871 UDP-sulfoquinovose:DA 93.9 0.21 4.6E-06 56.5 8.9 124 572-731 260-384 (465)
57 cd03814 GT1_like_2 This family 93.9 0.74 1.6E-05 47.5 12.0 121 573-730 195-315 (364)
58 cd03812 GT1_CapH_like This fam 93.6 0.29 6.3E-06 51.3 8.6 120 571-720 188-307 (358)
59 cd03820 GT1_amsD_like This fam 93.5 0.72 1.6E-05 46.6 10.9 125 574-730 177-302 (348)
60 cd03806 GT1_ALG11_like This fa 93.3 0.52 1.1E-05 53.1 10.6 138 574-730 236-377 (419)
61 PRK15179 Vi polysaccharide bio 93.2 0.39 8.5E-06 58.4 10.0 128 572-731 514-641 (694)
62 cd04955 GT1_like_6 This family 93.0 0.91 2E-05 47.6 11.2 120 577-729 195-314 (363)
63 cd03798 GT1_wlbH_like This fam 92.8 0.35 7.7E-06 49.1 7.6 129 572-730 199-327 (377)
64 cd03823 GT1_ExpE7_like This fa 92.2 0.64 1.4E-05 47.8 8.6 126 573-732 189-314 (359)
65 cd03802 GT1_AviGT4_like This f 91.0 0.7 1.5E-05 48.0 7.5 122 577-731 173-294 (335)
66 PRK10307 putative glycosyl tra 90.2 2.5 5.4E-05 46.7 11.3 126 571-730 225-356 (412)
67 cd04946 GT1_AmsK_like This fam 89.8 2.7 5.9E-05 47.1 11.4 129 575-731 230-360 (407)
68 cd03816 GT1_ALG1_like This fam 89.3 1.7 3.6E-05 48.9 9.2 140 574-737 231-372 (415)
69 cd03788 GT1_TPS Trehalose-6-Ph 87.6 11 0.00023 43.6 14.4 132 573-714 262-400 (460)
70 PHA01630 putative group 1 glyc 87.3 2.3 4.9E-05 47.0 8.5 118 575-731 142-259 (331)
71 PF08323 Glyco_transf_5: Starc 86.5 0.7 1.5E-05 48.8 3.9 36 40-75 8-43 (245)
72 cd04951 GT1_WbdM_like This fam 79.0 4.9 0.00011 42.1 6.6 125 571-729 184-308 (360)
73 PF13692 Glyco_trans_1_4: Glyc 78.6 4.3 9.3E-05 37.3 5.4 124 574-736 1-125 (135)
74 TIGR03087 stp1 sugar transfera 77.8 20 0.00043 39.7 11.2 109 573-712 222-331 (397)
75 PLN02275 transferase, transfer 74.3 16 0.00034 40.4 9.2 135 577-730 215-358 (371)
76 PRK09922 UDP-D-galactose:(gluc 73.7 19 0.0004 39.3 9.5 125 576-731 181-308 (359)
77 PHA01633 putative glycosyl tra 71.8 16 0.00034 41.2 8.5 122 573-729 146-270 (335)
78 TIGR02400 trehalose_OtsA alpha 58.7 94 0.002 36.3 11.8 134 574-717 258-398 (456)
79 PRK10125 putative glycosyl tra 51.0 35 0.00075 38.8 6.6 56 671-731 300-355 (405)
80 PLN02501 digalactosyldiacylgly 50.6 60 0.0013 40.7 8.7 118 579-731 550-667 (794)
81 PLN02846 digalactosyldiacylgly 38.8 1E+02 0.0022 36.4 8.0 119 578-731 231-349 (462)
82 COG0438 RfaG Glycosyltransfera 34.8 2.4E+02 0.0052 27.9 8.9 125 576-731 200-326 (381)
83 PF14474 RTC4: RTC4-like domai 34.0 32 0.00069 33.7 2.5 32 256-287 85-117 (124)
84 KOG0853 Glycosyltransferase [C 30.5 1.3E+02 0.0028 36.1 7.1 148 571-734 269-418 (495)
85 TIGR03713 acc_sec_asp1 accesso 23.8 6.1E+02 0.013 30.5 11.1 176 574-839 320-515 (519)
86 cd00127 DSPc Dual specificity 22.5 1.7E+02 0.0037 27.3 5.2 38 243-284 81-121 (139)
87 TIGR02398 gluc_glyc_Psyn gluco 21.5 7.3E+02 0.016 29.8 11.1 140 560-717 275-424 (487)
88 TIGR00236 wecB UDP-N-acetylglu 21.0 4E+02 0.0087 29.2 8.4 69 659-737 256-325 (365)
89 PF00782 DSPc: Dual specificit 20.9 2.8E+02 0.006 25.9 6.2 38 243-284 73-113 (133)
No 1
>KOG2099 consensus Glycogen phosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-267 Score=2163.22 Aligned_cols=738 Identities=56% Similarity=0.967 Sum_probs=716.6
Q ss_pred CcccCCcchHHHHHhcCcHHHHHHHHHHhCCCHHHHHccCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcce
Q 003055 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLF 80 (852)
Q Consensus 1 ~Efl~Gr~l~n~l~nlgl~~~~~eal~~lg~~le~~~~~E~da~LgnGGLGrLAacfldS~a~L~~P~~GyGlrY~yG~F 80 (852)
|||+|||+|+|+++||||.+.+.+||.+||+++|++.++|+|||||||||||||+||||||||||+|+|||||||+||+|
T Consensus 88 lEf~mGRaL~Ntm~Nlglq~~~deAl~qlG~dlEel~e~E~DagLGNGGLGRLAaCFlDSMATlglpA~GYGlRYeyGiF 167 (843)
T KOG2099|consen 88 LEFYMGRALQNTMINLGLQNACDEALYQLGLDLEELEEQEEDAGLGNGGLGRLAACFLDSMATLGLPAYGYGLRYEYGIF 167 (843)
T ss_pred hHHhhhhHHHHHHHhccCcchhHHHHHHhCcCHHHHHhcCcCcCcCCcchHHHHHHHHHHHhhcCCccccccceeehhhH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCceeeecccccccCCCcccccCCceeeeecCCeeeeCCCCCeeeeCCeeEEEEEEeecCCCCCCCCeEEEEEEE
Q 003055 81 KQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWS 160 (852)
Q Consensus 81 ~Q~I~dG~Q~E~pd~Wl~~gnpwei~r~~~~~~V~f~G~~~~~~~G~~~w~~~~~v~A~~yd~pi~Gy~~~~~~~LRLW~ 160 (852)
+|+|.+|||+|.||+||+.|||||+.|+++++||+|||+|+...+| .+|++++.|.|+|||+|||||+|++||+||||+
T Consensus 168 ~QkI~~g~Q~E~~ddWL~~gnPWE~~R~e~~lPV~FyGkV~~~~~g-~kWid~q~V~A~~YD~PvPGyk~n~vntlRLWs 246 (843)
T KOG2099|consen 168 KQKITDGWQVEEPDDWLRYGNPWEKARPEVMLPVHFYGKVEHTPDG-SKWIDTQVVLAMPYDTPVPGYKNNTVNTLRLWS 246 (843)
T ss_pred HHHhcCCccccchHHHHHcCCchhhcCcceEeEEEEEEEEEeCCCc-ceeecceeEEEeccCCCCCCcccCcceeeeeec
Confidence 9999999999999999999999999999999999999999988878 579999999999999999999999999999999
Q ss_pred ecCCCCcccccccCCCchhHHHHHhccccccCccccccCCCCCcccchhhhhhhhhhhhchHHHHHHHHHHhcCc-----
Q 003055 161 TMVPSEDFDLSAFNAGDHTKAAEALTNAEKVPICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGA----- 235 (852)
Q Consensus 161 a~v~~~~fdl~~fn~g~y~~a~~~~~~~e~r~It~~LYp~D~~~~GkelRLkQeyfl~saslqdiirrf~~~~gG----- 235 (852)
|+ ++++|||..||.|||++|+.+++.+|+ ||.||||||+..+||+||||||||+|+||||||||||+++.+|
T Consensus 247 ak-a~~df~l~~fN~Gdy~~av~~~~~Aen--I~~VLYPnDnf~eGKeLRLKQqyf~caAtLqDIirRFk~sk~~~r~~~ 323 (843)
T KOG2099|consen 247 AK-APNDFDLKDFNVGDYIQAVLDRNLAEN--ISRVLYPNDNFFEGKELRLKQQYFLCAATLQDIIRRFKSSKFGCREPV 323 (843)
T ss_pred cC-CCCCCCHHhccCchHHHHHHHHHhhhh--ceEEecCCCccccchhhhhhhhhhhhHHHHHHHHHHHhhcccCccccc
Confidence 99 777999999999999999999999999 9999999999999999999999999999999999999988776
Q ss_pred ccccccCCCCceEEeCCCChhhhHHHHHHHHHHhcCCCHHHHHHHhccceeecccCCCCcccccCCHHHHHHhchhHHHH
Q 003055 236 NVNWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEI 315 (852)
Q Consensus 236 ~~~l~~l~~~~~ihlNDtHpalai~ELmR~Lid~~gl~w~eAw~i~~~~~~fTnHT~vpealEkw~~~l~~~lLprh~~I 315 (852)
..+|++||++++||||||||+||||||||+|||.+||+|++||+||++||+|||||+||||||+||++||++||||||||
T Consensus 324 ~~~~~~FPdkVAiQlNDTHPtLaIpELmRiLvD~e~l~W~~AWdit~kT~AYTNHTVlpEALErWp~~L~e~LLPRHleI 403 (843)
T KOG2099|consen 324 RTNFEEFPDKVAIQLNDTHPTLAIPELMRILVDLEGLDWDKAWDITQKTCAYTNHTVLPEALERWPVSLMEKLLPRHLEI 403 (843)
T ss_pred ccchhhCcHhheeeccCCCccccHHHHHHHHHhcccCCHHHHHHHhhhheeeccccccHHHHHHhhHHHHHHhhhHHHHH
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHhhCCCCchhhHHHHhhhccccccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhh
Q 003055 316 IEMIDEELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQ 395 (852)
Q Consensus 316 I~~In~~f~~~i~~~~~~~~~~~~~~~~~~l~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (852)
||+||.+|+..+.++||+ |.+++++||||+
T Consensus 404 Iy~In~~~l~~i~~~fp~-----D~drlrrmsiie--------------------------------------------- 433 (843)
T KOG2099|consen 404 IYEINQRFLQTVAAKFPG-----DVDRLRRMSIIE--------------------------------------------- 433 (843)
T ss_pred HHHHHHHHHHHHHHHCCC-----cHHHHhhhhhhh---------------------------------------------
Confidence 999999999999999998 999999999988
Q ss_pred cccccccccCCCCCCcccccccCCCCCCccchhhhhhhhhHHHHHhhhhcCCCCCeeeeeeeeeccCcchhHHHHHHHHH
Q 003055 396 EDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEI 475 (852)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~v~Ma~Lal~~S~~vNGVS~lHsei 475 (852)
|. ++++++|||+||++|||+|||||+|||+|
T Consensus 434 -----------------------------------------------e~--~~~k~i~MA~L~ivgsHaVNGVa~iHSei 464 (843)
T KOG2099|consen 434 -----------------------------------------------EN--SPEKRINMAHLCIVGSHAVNGVAEIHSEI 464 (843)
T ss_pred -----------------------------------------------cC--CccceeeeeeeeeecccccccHHHHHHHH
Confidence 21 24579999999999999999999999999
Q ss_pred HhHhhhhhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHH
Q 003055 476 VTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNN 555 (852)
Q Consensus 476 ~k~~~f~~f~~l~P~kf~n~TNGVt~rrWl~~~Np~L~~Li~~~ig~~~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~n 555 (852)
+|+.+|+||+++||+||+|||||||||||+.+|||.|++||+++||+ +|++|+++|.+|+++++|++|++.|+++|++|
T Consensus 465 lK~~~F~Df~e~~P~KFqNkTNGITPRRWL~~cnP~LadlI~e~ige-~~i~dl~~l~~L~~~a~d~~f~~~~a~vK~~N 543 (843)
T KOG2099|consen 465 LKQSVFKDFYELEPEKFQNKTNGITPRRWLLLCNPGLADLITEKIGE-EWITDLDQLTKLRKFADDEEFQREWAKVKQEN 543 (843)
T ss_pred HHHHHHHHHHHhChHHhccccCCcCHHHHHHhcCchHHHHHHHHhhh-HhhhhHHHHHHHHHhcccHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHH
Q 003055 556 KMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAK 635 (852)
Q Consensus 556 K~~L~~~I~~~~g~~ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK 635 (852)
|.+|++||++.+|+.++|+||||+|||||||||||+|||||+|+||++||+ +|. ..++||++||||||+|+|++||
T Consensus 544 Klk~a~~le~e~~v~inp~smFDiqVKRIHEYKRQllN~l~vi~~y~riK~-e~~---k~fvprtvm~GGKaapgY~mAK 619 (843)
T KOG2099|consen 544 KLKLAAYLEKEYGVKINPSSMFDIQVKRIHEYKRQLLNCLHVIYLYNRIKE-EPA---KAFVPRTVMIGGKAAPGYHMAK 619 (843)
T ss_pred HHHHHHHHHHHhCcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhh---hccCceEEEEcCccCchhHHHH
Confidence 999999999999999999999999999999999999999999999999997 554 4489999999999999999999
Q ss_pred HHHHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccc
Q 003055 636 RIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANV 715 (852)
Q Consensus 636 ~iIk~I~~va~~vn~Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanv 715 (852)
.|||||++||++|||||.|+++|||||||||+||+||+||||+|+|+||||||+||||||||||||||||+|||||||||
T Consensus 620 ~Iiklit~V~dvVN~Dp~vgd~LKViFl~nY~Vs~AE~iIPasdLSe~ISTAGtEASGT~NMKF~lNG~l~IGTlDGANV 699 (843)
T KOG2099|consen 620 LIIKLITAVADVVNNDPEVGDRLKVIFLENYRVSLAEKIIPASDLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANV 699 (843)
T ss_pred HHHHHHHHHHHHhcCChhhhheeEEEEecCcccchhhhccchHHHHHHhhhccccccCCCcceEEecCeEEEecccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccceEecccchhhhhhhhhhc--CCCCCCCChhHHHHHHHHhcCCCCccc---HHHHHHHhccCCCCCCCccc
Q 003055 716 EIRQEVGEENFFLFGARAHEIAGLRKER--SEGKFVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYF 790 (852)
Q Consensus 716 Ei~e~vg~eN~f~FG~~~~ev~~l~~~~--~~~~~~~~~~~~~v~d~i~~g~f~~~~---~~~l~~~L~~~~~~~~~D~y 790 (852)
||+||+|+||+||||+++++|..||+++ ..+.|.++|++++|+++|.+|.|++++ |+++.+.|.++ |+|
T Consensus 700 Em~eE~GeeN~FiFG~~~e~V~~L~k~gy~a~~~~~~~P~l~~v~~~i~sG~Fsp~~pd~fkd~~~~l~~h------D~f 773 (843)
T KOG2099|consen 700 EMAEEAGEENFFIFGMRVEDVEALRKKGYNAQEYYDPLPELKQVIDQIESGFFSPKNPDEFKDIVNMLMYH------DYF 773 (843)
T ss_pred HHHHHcCcccEEEecccHHHHHHHHhhcccccccCCCCchHHHHHHHHhcCccCCCCchHHHHHHHhhhcc------ceE
Confidence 9999999999999999999999999985 444578999999999999999999876 88888888874 999
Q ss_pred ccccchhHHHHHHHHHHHHhcCHhHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcccccCCC
Q 003055 791 LVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVELP 852 (852)
Q Consensus 791 ~vlaDF~sY~~aQ~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~~iw~i~p~~~p 852 (852)
+|++||+||++||++|+++|.||++|++|+|+|||+||+|||||||.|||++||+|+|++.|
T Consensus 774 ~V~~Df~sYi~~q~kVd~~y~nqk~W~~msi~niA~sgkFSSDRtI~eYa~eIWnvep~~~~ 835 (843)
T KOG2099|consen 774 LVFADFEAYIKCQEKVDQLYRNQKEWLKMSILNIAGSGKFSSDRTIAEYAREIWNVEPSELP 835 (843)
T ss_pred EeeCcHHHHHHHHHHHHHHHhCHHHHHHHHHHhhhcccccCccchHHHHHHHhcCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999998865
No 2
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=100.00 E-value=1.4e-249 Score=2125.63 Aligned_cols=730 Identities=53% Similarity=0.918 Sum_probs=705.9
Q ss_pred CcccCCcchHHHHHhcCcHHHHHHHHHHhCCCHHHHHccCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcce
Q 003055 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLF 80 (852)
Q Consensus 1 ~Efl~Gr~l~n~l~nlgl~~~~~eal~~lg~~le~~~~~E~da~LgnGGLGrLAacfldS~a~L~~P~~GyGlrY~yG~F 80 (852)
|||||||+|.|||+|||+++++++||++||+++|+++++|+||||||||||||||||||||||||+|++||||||+||||
T Consensus 57 ~EfL~Gr~l~nnl~nlgl~~~~~~~l~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~Atl~~P~~GyGirY~yG~F 136 (794)
T TIGR02093 57 AEFLMGRLLGNNLLNLGLYDEVKEALRELGLDLEEILEIENDAGLGNGGLGRLAACFLDSLATLGLPATGYGIRYEYGLF 136 (794)
T ss_pred hhhhcchHHHHHHHhCCCHHHHHHHHHHhCCCHHHHHhcCCCCCCCCCchHHHHHHHHHHHHhCCCCeEEEEeeecCCce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCceeeecccccccCCCcccccCCceeeeecCCeeeeCCC-CC--eeeeCCeeEEEEEEeecCCCCCCCCeEEEE
Q 003055 81 KQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGSD-GK--SHWIGGEDIKAVAYDIPIPGYKTKTTINLR 157 (852)
Q Consensus 81 ~Q~I~dG~Q~E~pd~Wl~~gnpwei~r~~~~~~V~f~G~~~~~~~-G~--~~w~~~~~v~A~~yd~pi~Gy~~~~~~~LR 157 (852)
+|+|.||||+|.||+|+..++|||++|++.+++|+|+|+++...+ |+ .+|++++.|+|+|||+|||||+++++|+||
T Consensus 137 ~Q~I~dG~Q~E~pd~Wl~~~~pwe~~r~~~~~~V~f~G~v~~~~~~g~~~~~w~~~~~v~avpyD~pi~Gy~~~~vn~LR 216 (794)
T TIGR02093 137 KQKIVDGWQVELPDDWLRYGNPWEIRRPDRSYEVRFGGRVELQPDSDRLRPRWVPAETVLAIPYDVPVPGYRTDTVNTLR 216 (794)
T ss_pred EEEEECCEEEEcCCCcCCCCCCceeecCCcEEEEEeCCEEeeeccCCcceeEeeCceEEEEeecceeecCCCCCceEEEE
Confidence 999999999999999999999999999999999999999975443 63 349999999999999999999999999999
Q ss_pred EEEecCCCCcccccccCCCchhHHHHHhccccccCccccccCCCCCcccchhhhhhhhhhhhchHHHHHHHHHHhcCccc
Q 003055 158 LWSTMVPSEDFDLSAFNAGDHTKAAEALTNAEKVPICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANV 237 (852)
Q Consensus 158 LW~a~v~~~~fdl~~fn~g~y~~a~~~~~~~e~r~It~~LYp~D~~~~GkelRLkQeyfl~saslqdiirrf~~~~gG~~ 237 (852)
||+++ +.+.|||..||+|||.+|+++++.+|+ ||++|||+|++++||+|||||||||||||+|||||+|++.+ .
T Consensus 217 LW~a~-~~~~f~l~~fn~gdy~~a~~~~~~~e~--It~vLYp~D~~~~Gk~lRLkQeyfl~~aglqdiir~~~~~~---~ 290 (794)
T TIGR02093 217 LWSAE-APEEFDLDAFNAGDYYEAVEEKNRAEN--ISRVLYPNDSTYEGKELRLKQQYFFVSASLQDIIRRHLETH---P 290 (794)
T ss_pred EEEec-CccccCHhhccCccHhhhhhChhhcCc--cccCCcCCCCccchHHHHHHHHHHhhhhHHHHHHHHHHHhC---C
Confidence 99999 577899999999999999999999999 99999999999999999999999999999999999999987 5
Q ss_pred ccccCCCCceEEeCCCChhhhHHHHHHHHHHhcCCCHHHHHHHhccceeecccCCCCcccccCCHHHHHHhchhHHHHHH
Q 003055 238 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIE 317 (852)
Q Consensus 238 ~l~~l~~~~~ihlNDtHpalai~ELmR~Lid~~gl~w~eAw~i~~~~~~fTnHT~vpealEkw~~~l~~~lLprh~~II~ 317 (852)
+|+.||++++|||||||||||+|||||+|||++|++|++||+||+++|+||||||||||||+||++||+++||||++||+
T Consensus 291 ~l~~l~~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~wp~~l~~~~Lpr~~~iI~ 370 (794)
T TIGR02093 291 DLSDFPKKVAIQLNDTHPALAIPELMRLLIDEEGMDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFQKLLPRHLEIIY 370 (794)
T ss_pred ChhhCCcceEEEecCCchHHHHHHHHHHHHHhcCCCHHHHHHHHHhheecccCCCChHHhCCcCHHHHHHHHhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHhhCCCCchhhHHHHhhhccccccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhcc
Q 003055 318 MIDEELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQED 397 (852)
Q Consensus 318 ~In~~f~~~i~~~~~~~~~~~~~~~~~~l~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (852)
+||++|+..++..+|+ +++++.+|+||+
T Consensus 371 ~In~~fl~~~~~~~p~-----d~~~~~~~sii~----------------------------------------------- 398 (794)
T TIGR02093 371 EINRRFLAELAAKGPG-----DEAKIRRMSIIE----------------------------------------------- 398 (794)
T ss_pred HHhHHHHHHHHHhCCC-----cHHHHhheeeee-----------------------------------------------
Confidence 9999999999999999 999999999998
Q ss_pred cccccccCCCCCCcccccccCCCCCCccchhhhhhhhhHHHHHhhhhcCCCCCeeeeeeeeeccCcchhHHHHHHHHHHh
Q 003055 398 GVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVT 477 (852)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~v~Ma~Lal~~S~~vNGVS~lHsei~k 477 (852)
+ ++.++||||+||+++||+|||||+||++|+|
T Consensus 399 ---------------------------------------------~---~~~~~v~Ma~LAi~~S~~vNGVS~lH~eilk 430 (794)
T TIGR02093 399 ---------------------------------------------E---GQSKRVRMANLAIVGSHSVNGVAALHTELLK 430 (794)
T ss_pred ---------------------------------------------c---CCCCEEehHHHHHHhhhhhhhhHHHHHHHHH
Confidence 2 2234799999999999999999999999999
Q ss_pred HhhhhhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 003055 478 NEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKM 557 (852)
Q Consensus 478 ~~~f~~f~~l~P~kf~n~TNGVt~rrWl~~~Np~L~~Li~~~ig~~~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~ 557 (852)
+++|++|+++||+||+|||||||+|||+.+|||+|++||+++||+ +|+++++.|++|+++++|++|+++|+++|++||.
T Consensus 431 ~~~~~df~~l~P~kf~n~TNGVt~rrWl~~~np~L~~Li~~~ig~-~W~~d~~~l~~l~~~~~D~~f~~~l~~vK~~nK~ 509 (794)
T TIGR02093 431 EDLLKDFYELYPEKFNNKTNGITPRRWLRLANPGLSALLTETIGD-DWLTDLDLLKKLEPYADDSEFLEEFRQVKQANKQ 509 (794)
T ss_pred HHHHHHHHhhCCCccCCcCCCCCccchhhhcCHHHHHHHHHhcCc-hhhhcHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999996 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHH
Q 003055 558 KVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRI 637 (852)
Q Consensus 558 ~L~~~I~~~~g~~ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~i 637 (852)
+|++||++++|+.+||++|||+|||||||||||+||||+|++||.+||+ +|... ++||||||||||||+|.+||.|
T Consensus 510 ~L~~~i~~~~g~~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~-~p~~~---~~P~~~IFaGKAaP~y~~aK~i 585 (794)
T TIGR02093 510 RLAAYIKEHTGVEVDPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKE-DPPKD---IVPRTVIFGGKAAPGYHMAKLI 585 (794)
T ss_pred HHHHHHHHhcCCccCccccchhhheechhhhHHHHHHhhhHHHHHHHHh-CCCcC---CCCeEEEEEecCCCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999997 66643 7899999999999999999999
Q ss_pred HHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccc
Q 003055 638 VKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEI 717 (852)
Q Consensus 638 Ik~I~~va~~vn~Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi 717 (852)
||+|++||++||+||+++++|||||||||+||+||+||||||||+||||||+||||||||||||||||||||||||||||
T Consensus 586 IklI~~va~~iN~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi 665 (794)
T TIGR02093 586 IKLINSVAEVVNNDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEI 665 (794)
T ss_pred HHHHHHHHHHhccChhhCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceEecccchhhhhhhhhhc--CCCCCCCChhHHHHHHHHhcCCCCccc---HHHHHHHhccCCCCCCCccccc
Q 003055 718 RQEVGEENFFLFGARAHEIAGLRKER--SEGKFVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLV 792 (852)
Q Consensus 718 ~e~vg~eN~f~FG~~~~ev~~l~~~~--~~~~~~~~~~~~~v~d~i~~g~f~~~~---~~~l~~~L~~~~~~~~~D~y~v 792 (852)
+++||+||+|+||++++||..+|..+ +...|..+|.+++|+|+|.+|+|++.+ |++||++|..+ +|+|||
T Consensus 666 ~e~vG~eN~fiFG~~~~ev~~~~~~~Y~~~~~y~~~~~l~~~~d~i~~g~f~~~~~~~f~~l~~~l~~~-----~D~y~v 740 (794)
T TIGR02093 666 REEVGAENIFIFGLTVEEVEALREKGYNPREYYEADPELKRVLDLISSGTFSPGDPGLFRPLYDSLLNH-----GDPFFV 740 (794)
T ss_pred HHHhCcccEEEcCCCHHHHHHHHHcCCCchhcccCCHHHHHHHHHHhcCCCCCCCchHHHHHHHHHccC-----CCeeee
Confidence 99999999999999999999999886 333478899999999999999998654 99999999875 899999
Q ss_pred ccchhHHHHHHHHHHHHhcCHhHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcc
Q 003055 793 GKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI 846 (852)
Q Consensus 793 laDF~sY~~aQ~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~~iw~i 846 (852)
++||+||++||++|+++|.|+++|++|||.|||+||+|||||||+|||++||++
T Consensus 741 l~Df~sY~~~q~~v~~~Y~d~~~W~~~~i~Nia~~G~FSsDRtI~eYa~~IW~~ 794 (794)
T TIGR02093 741 LADFAAYVDAQERVDALYRDQLEWTKKSILNIANSGKFSSDRTIREYAKEIWHV 794 (794)
T ss_pred eccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCcCCchhHHHHHHHhhCc
Confidence 999999999999999999999999999999999999999999999999999985
No 3
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=100.00 E-value=2.1e-248 Score=2114.01 Aligned_cols=726 Identities=45% Similarity=0.790 Sum_probs=705.7
Q ss_pred CcccCCcchHHHHHhcCcHHHHHHHHHHhCCCHHHHHccCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcce
Q 003055 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLF 80 (852)
Q Consensus 1 ~Efl~Gr~l~n~l~nlgl~~~~~eal~~lg~~le~~~~~E~da~LgnGGLGrLAacfldS~a~L~~P~~GyGlrY~yG~F 80 (852)
|||||||+|.|||+|||++++++|||++||+|+|+++++|+||||||||||||||||||||||||+|++||||||+||||
T Consensus 66 ~EfL~Gr~l~nnl~nlgl~~~~~~al~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~AtL~lP~~GyGirY~yG~F 145 (798)
T PRK14985 66 MEFLIGRLTGNNLLNLGWYDDVQDVLKAYDINLTDLLEEETDPALGNGGLGRLAACFLDSMATVGQPATGYGLNYQYGLF 145 (798)
T ss_pred hhhhccHHHHHHHHhcCCHHHHHHHHHHcCCCHHHHhccCCCCCCCCcchHHHHHHHHHHHHhCCCCeEEEEeccCCCCe
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCceeeecccccccCCCcccccCCceeeeecCCeeeeCCCCCeeeeCCeeEEEEEEeecCCCCCCCCeEEEEEEE
Q 003055 81 KQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWS 160 (852)
Q Consensus 81 ~Q~I~dG~Q~E~pd~Wl~~gnpwei~r~~~~~~V~f~G~~~~~~~G~~~w~~~~~v~A~~yd~pi~Gy~~~~~~~LRLW~ 160 (852)
+|+|+||+|+|.||.|+..++|||++|++..++|+|+|+++.. +|+.+|++++.|.|+|||+|||||+|.++|+||||+
T Consensus 146 ~Q~I~dG~Q~E~pd~Wl~~~~pwe~~r~~~~~~V~f~G~v~~~-~G~~~w~~~~~v~avpyDvpi~Gy~~~~~n~LRLW~ 224 (798)
T PRK14985 146 RQSFVDGKQVEAPDDWHRDSYPWFRHNEALDVQVGIGGKVTKQ-DGRERWEPAFTITGEAWDLPVVGYRNGVAQPLRLWQ 224 (798)
T ss_pred EEEEECCeEEECCCCcccCCCCceecCCCceEEEeeCCEEEee-CCcEEEECCEEEEEEeccccccCCCCCceEEEEEeE
Confidence 9999999999999999999999999999999999999999754 788899999999999999999999999999999999
Q ss_pred ecCCCCcccccccCCCchhHHHHHhccccccCccccccCCCCCcccchhhhhhhhhhhhchHHHHHHHHHHhcCcccccc
Q 003055 161 TMVPSEDFDLSAFNAGDHTKAAEALTNAEKVPICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWE 240 (852)
Q Consensus 161 a~v~~~~fdl~~fn~g~y~~a~~~~~~~e~r~It~~LYp~D~~~~GkelRLkQeyfl~saslqdiirrf~~~~gG~~~l~ 240 (852)
+++ ..+|||..||+|||.+|+++++.+|+ ||++|||+|++++||+|||||||||||||+|||||||++.+ +.|+
T Consensus 225 a~~-~~~~~l~~fn~gdy~~a~en~~~~e~--It~~LYp~D~~~~Gk~lRLkQEyfl~sa~vqdilr~~~~~~---~~l~ 298 (798)
T PRK14985 225 ATH-AHPFDLTKFNDGDFLRAEQQGIDAEK--LTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHLAG---RKLH 298 (798)
T ss_pred cCC-CCccCHHHcCCcchhhccccchhhcc--hhceecCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcC---CChh
Confidence 995 55999999999999999999888888 99999999999999999999999999999999999999854 6899
Q ss_pred cCCCCceEEeCCCChhhhHHHHHHHHHHhcCCCHHHHHHHhccceeecccCCCCcccccCCHHHHHHhchhHHHHHHHHh
Q 003055 241 EFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMID 320 (852)
Q Consensus 241 ~l~~~~~ihlNDtHpalai~ELmR~Lid~~gl~w~eAw~i~~~~~~fTnHT~vpealEkw~~~l~~~lLprh~~II~~In 320 (852)
.||++++|||||||||||+|||||+|||++|++|++||+||+++|+||||||||||||+||++||+++||||++||++||
T Consensus 299 ~l~~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~w~~~l~~~~Lpr~~~ii~~in 378 (798)
T PRK14985 299 ELPDYEVIQLNDTHPTIAIPELLRVLLDEHQLSWDDAWAITSKTFAYTNHTLMPEALECWDEKLVKSLLPRHMQIIKEIN 378 (798)
T ss_pred hCCCCcEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHheeeecCCCChhhhCCCCHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCchhhHHHHhhhccccccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhccccc
Q 003055 321 EELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVL 400 (852)
Q Consensus 321 ~~f~~~i~~~~~~~~~~~~~~~~~~l~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (852)
++|+..+...||+ +.+++.+|+||+
T Consensus 379 ~~fl~~~~~~~~~-----d~~~~~~~sii~-------------------------------------------------- 403 (798)
T PRK14985 379 TRFKTLVEKTWPG-----DKKVWAKLAVVH-------------------------------------------------- 403 (798)
T ss_pred HHHHHHHHHhCCC-----cHHHhhhhhhcc--------------------------------------------------
Confidence 9999999999998 899999999987
Q ss_pred ccccCCCCCCcccccccCCCCCCccchhhhhhhhhHHHHHhhhhcCCCCCeeeeeeeeeccCcchhHHHHHHHHHHhHhh
Q 003055 401 EEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEV 480 (852)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~v~Ma~Lal~~S~~vNGVS~lHsei~k~~~ 480 (852)
+ ++||||+||+++||+|||||+||++|+++.|
T Consensus 404 ------------------------------------------~------~~v~Ma~LAi~~S~~vNGVS~lH~eil~~~~ 435 (798)
T PRK14985 404 ------------------------------------------D------KQVRMANLCVVSGFAVNGVAALHSDLVVKDL 435 (798)
T ss_pred ------------------------------------------C------CeeehHHHHHHhcchhHhhHHHHhchhHHhh
Confidence 2 3799999999999999999999999999999
Q ss_pred hhhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHH
Q 003055 481 FNEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVV 560 (852)
Q Consensus 481 f~~f~~l~P~kf~n~TNGVt~rrWl~~~Np~L~~Li~~~ig~~~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~ 560 (852)
|++|+++||+||+|||||||+|||+.+|||.|++||+++||+ +|+++++.|++|+++++|++|+++|+++|++||.+|+
T Consensus 436 f~df~~l~p~kf~nvTNGVt~rrWl~~~np~L~~Li~~~ig~-~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~ 514 (798)
T PRK14985 436 FPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKTLKK-EWANDLDQLINLEKYADDAAFRQQYREIKQANKVRLA 514 (798)
T ss_pred hhhhHhhCCCccCCcCCCcCcchhhhhhCHHHHHHHHHhcCc-chhhChHHHHHhhccCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997 8999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHH
Q 003055 561 SFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKF 640 (852)
Q Consensus 561 ~~I~~~~g~~ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~ 640 (852)
+||++++|+.+||++|||+|||||||||||+||||+|++||.+||+ +|... ++||||||||||||+|.+||.|||+
T Consensus 515 ~~i~~~~g~~ldp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~-~p~~~---~~P~~~IFaGKAaP~y~~aK~iIkl 590 (798)
T PRK14985 515 EFVKQRTGIEINPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRE-NPQAD---RVPRVFLFGAKAAPGYYLAKNIIFA 590 (798)
T ss_pred HHHHHHhCCccCchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHh-CCCcC---CCCeEEEEeecCCCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 66644 7899999999999999999999999
Q ss_pred HHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccccccccccc
Q 003055 641 ITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQE 720 (852)
Q Consensus 641 I~~va~~vn~Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~ 720 (852)
|++||++||+||+++++|||||||||+|++||+||||||||+||||||+||||||||||||||||||||||||||||+++
T Consensus 591 I~~va~~in~Dp~v~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~ 670 (798)
T PRK14985 591 INKVAEVINNDPLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQ 670 (798)
T ss_pred HHHHHHHhcCChhhCCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceEecccchhhhhhhhhhcCCC---CCCCChhHHHHHHHHhcCCCCccc---HHHHHHHhccCCCCCCCccccccc
Q 003055 721 VGEENFFLFGARAHEIAGLRKERSEG---KFVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGK 794 (852)
Q Consensus 721 vg~eN~f~FG~~~~ev~~l~~~~~~~---~~~~~~~~~~v~d~i~~g~f~~~~---~~~l~~~L~~~~~~~~~D~y~vla 794 (852)
||++|+|+||++++||..+|.++ |+ .|..+|.+++|+|+|.+|+|++.+ |++||++|..+ +|+|||++
T Consensus 671 vG~eN~f~fG~~~~ev~~~~~~~-y~~~~~y~~~~~l~~v~d~i~~g~f~~~~~~~f~~i~~~l~~~-----~D~y~vl~ 744 (798)
T PRK14985 671 VGEENIFIFGHTVEQVKALLAKG-YDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSLKQG-----GDPYLVLA 744 (798)
T ss_pred hCcCcEEEeCCCHHHHHHHHHcC-CChhhhccCCHHHHHHHHHHhcCCCCCCCchhHHHHHHHHhhC-----CCeeEeec
Confidence 99999999999999999999876 43 377999999999999999998765 99999999865 79999999
Q ss_pred chhHHHHHHHHHHHHhcCHhHHHHHHHHhhhcCCCCChhHHHHHHHHHHhccc
Q 003055 795 DFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNII 847 (852)
Q Consensus 795 DF~sY~~aQ~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~~iw~i~ 847 (852)
||+||++||++|+++|.|+++|++|||.|||+||+|||||||+|||++||+++
T Consensus 745 Df~sY~~~q~~v~~~y~d~~~W~~~~i~Nia~~G~FSsDRtI~eYa~~IW~~~ 797 (798)
T PRK14985 745 DFAAYVEAQKQVDALYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIWQAK 797 (798)
T ss_pred cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHccCCcCcHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999986
No 4
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=100.00 E-value=1.8e-247 Score=2114.04 Aligned_cols=730 Identities=55% Similarity=0.928 Sum_probs=705.4
Q ss_pred CcccCCcchHHHHHhcCcHHHHHHHHHHhCCCHHHHHccCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcce
Q 003055 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLF 80 (852)
Q Consensus 1 ~Efl~Gr~l~n~l~nlgl~~~~~eal~~lg~~le~~~~~E~da~LgnGGLGrLAacfldS~a~L~~P~~GyGlrY~yG~F 80 (852)
|||||||+|.|||+||||++++++||++||+++|+++++|+||||||||||||||||||||||||+|++||||||+||||
T Consensus 60 ~EfL~Gr~L~nnl~nLgl~~~~~~~L~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~AtLglP~~G~GirY~yG~F 139 (797)
T cd04300 60 LEFLMGRLLGNNLLNLGLYDEVREALAELGVDLEDLEEQEPDAGLGNGGLGRLAACFLDSLATLGLPGYGYGIRYEYGLF 139 (797)
T ss_pred hhhhcchHHHHHHHhCCcHHHHHHHHHHhCCCHHHHHhcCCCCCCCCCCcchhHHHHHHHHHhCCCCeEEEEecccCCCe
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCceeeecccccccCCCcccccCCceeeeecCCeeeeCCC-CCe--eeeCCeeEEEEEEeecCCCCCCCCeEEEE
Q 003055 81 KQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGSD-GKS--HWIGGEDIKAVAYDIPIPGYKTKTTINLR 157 (852)
Q Consensus 81 ~Q~I~dG~Q~E~pd~Wl~~gnpwei~r~~~~~~V~f~G~~~~~~~-G~~--~w~~~~~v~A~~yd~pi~Gy~~~~~~~LR 157 (852)
+|+|++|||+|.||+|+..++|||++|++.+++|+|+|+++...+ |+. +|++++.|+|+|||+|||||++.++|+||
T Consensus 140 ~Q~i~~G~Q~E~pd~Wl~~~~pwe~~r~~~~~~V~f~G~~~~~~~~G~~~~~w~~~~~v~avpyDvpi~Gy~~~~~n~LR 219 (797)
T cd04300 140 KQKIVDGYQVELPDNWLRYGNPWEIRRPDVAVPVRFGGRVEHYEDGGRLRVRWVDGETVLAVPYDTPIPGYGTNTVNTLR 219 (797)
T ss_pred EEEEECCEEEecCCCccCCCCCceEecCCcEEEEEECCEEEEeecCCcceeeecCcceEEeeecceeecCCCCCceEEEE
Confidence 999999999999999999999999999999999999999975433 644 49999999999999999999999999999
Q ss_pred EEEecCCCCcccccccCCCchhHHHHHhccccccCccccccCCCCCcccchhhhhhhhhhhhchHHHHHHHHHHhcCccc
Q 003055 158 LWSTMVPSEDFDLSAFNAGDHTKAAEALTNAEKVPICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANV 237 (852)
Q Consensus 158 LW~a~v~~~~fdl~~fn~g~y~~a~~~~~~~e~r~It~~LYp~D~~~~GkelRLkQeyfl~saslqdiirrf~~~~gG~~ 237 (852)
||+++ +...|||+.||.|||.+|++.++.+++ ||++|||+|++++||+|||||||||||||+|||||+|++.+ .
T Consensus 220 LW~a~-~~~~~dl~~fn~gdy~~a~~~~~~~~~--It~~LYp~Ds~~~Gk~lRL~Qeyfl~sag~qdilr~~~~~~---~ 293 (797)
T cd04300 220 LWSAE-ASEEFDLDAFNRGDYIRAVEEKNRAEN--ISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKTH---G 293 (797)
T ss_pred EEEee-CCCCcCHHHhcCCchhhHHhhHHHhhh--hhcccCCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHhC---C
Confidence 99999 667899999999999999999999999 99999999999999999999999999999999999999998 4
Q ss_pred ccccCCCCceEEeCCCChhhhHHHHHHHHHHhcCCCHHHHHHHhccceeecccCCCCcccccCCHHHHHHhchhHHHHHH
Q 003055 238 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIE 317 (852)
Q Consensus 238 ~l~~l~~~~~ihlNDtHpalai~ELmR~Lid~~gl~w~eAw~i~~~~~~fTnHT~vpealEkw~~~l~~~lLprh~~II~ 317 (852)
.++.||++++|||||||||||||||||+|+|++|++|++||+||+++|+||||||||||||+||++||+++||||++||+
T Consensus 294 ~~~~l~~~~~ihlNDtHpalai~ElmR~L~d~~gl~w~~Aw~i~~~~~~yTnHT~lpealE~wp~~l~~~~lpr~~~II~ 373 (797)
T cd04300 294 PLSEFPDKVAIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFERLLPRHLEIIY 373 (797)
T ss_pred ChhhCCCceEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeeecCCCchHHhCccCHHHHHHHChHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHhhCCCCchhhHHHHhhhccccccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhcc
Q 003055 318 MIDEELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQED 397 (852)
Q Consensus 318 ~In~~f~~~i~~~~~~~~~~~~~~~~~~l~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (852)
+||++|+..+..++|. +.+++.+|+||+
T Consensus 374 ~In~~~~~~~~~~~~~-----~~~~~~~l~ii~----------------------------------------------- 401 (797)
T cd04300 374 EINRRFLEEVRAKYPG-----DEDRIRRMSIIE----------------------------------------------- 401 (797)
T ss_pred HHHHHHHHHHHHhcCC-----CHHHHHhhcccc-----------------------------------------------
Confidence 9999999999999998 999999999987
Q ss_pred cccccccCCCCCCcccccccCCCCCCccchhhhhhhhhHHHHHhhhhcCCCCCeeeeeeeeeccCcchhHHHHHHHHHHh
Q 003055 398 GVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVT 477 (852)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~v~Ma~Lal~~S~~vNGVS~lHsei~k 477 (852)
+ +++++||||+||+++||+|||||+||++|+|
T Consensus 402 ---------------------------------------------~---~~~~~v~Ma~LAi~~S~~vNGVS~lH~ei~k 433 (797)
T cd04300 402 ---------------------------------------------E---GGEKQVRMAHLAIVGSHSVNGVAALHSELLK 433 (797)
T ss_pred ---------------------------------------------c---CCCCEEehHHHHHhcCcchhhhHHHHHHHHH
Confidence 2 2235799999999999999999999999999
Q ss_pred HhhhhhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 003055 478 NEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKM 557 (852)
Q Consensus 478 ~~~f~~f~~l~P~kf~n~TNGVt~rrWl~~~Np~L~~Li~~~ig~~~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~ 557 (852)
+++|++|+++||+||+|||||||+|||+.+|||+|++||+++||+ +|++++++|++|+++++|++|+++|+++|++||.
T Consensus 434 ~~~~~df~~l~P~kf~n~TNGVt~rrWl~~~np~L~~Li~~~ig~-~W~~d~~~l~~l~~~~~D~~f~~~l~~~K~~nK~ 512 (797)
T cd04300 434 ETVFKDFYELYPEKFNNKTNGITPRRWLLQANPGLSALITETIGD-DWVTDLDQLKKLEPFADDPAFLKEFRAIKQANKE 512 (797)
T ss_pred HhhHHHHHhhCCCccCCcCCCCCcchhhhhcCHHHHHHHHHhcCc-hhhhChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHH
Q 003055 558 KVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRI 637 (852)
Q Consensus 558 ~L~~~I~~~~g~~ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~i 637 (852)
+|++||++++|+.+||++|||||||||||||||+||+|+|++||.+||+ +|... ++||||||||||||+|.+||.|
T Consensus 513 ~L~~~i~~~~g~~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~-~p~~~---~~P~~~IFaGKAaP~y~~aK~i 588 (797)
T cd04300 513 RLAAYIKKTTGVEVDPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKE-NPNAD---IVPRTFIFGGKAAPGYYMAKLI 588 (797)
T ss_pred HHHHHHHHHhCCccCCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHh-CCCcC---CCCeEEEEeccCCCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 66633 7899999999999999999999
Q ss_pred HHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccc
Q 003055 638 VKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEI 717 (852)
Q Consensus 638 Ik~I~~va~~vn~Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi 717 (852)
||+|++||++||+||+++++|||||||||+||+||+||||||||+||||||+||||||||||||||||||||||||||||
T Consensus 589 IklI~~va~~in~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi 668 (797)
T cd04300 589 IKLINAVADVVNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEI 668 (797)
T ss_pred HHHHHHHHHHhccChhcCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceEecccchhhhhhhhhhcCC--CCCCCChhHHHHHHHHhcCCCCccc---HHHHHHHhccCCCCCCCccccc
Q 003055 718 RQEVGEENFFLFGARAHEIAGLRKERSE--GKFVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLV 792 (852)
Q Consensus 718 ~e~vg~eN~f~FG~~~~ev~~l~~~~~~--~~~~~~~~~~~v~d~i~~g~f~~~~---~~~l~~~L~~~~~~~~~D~y~v 792 (852)
+++||+||+|+||++++||.++|..+.+ ..|..+|.+++|+|+|.+|+|++.+ |++||++|..+ +|+|||
T Consensus 669 ~e~vG~eN~fiFG~~~~ev~~~~~~~y~~~~~y~~~~~l~~v~d~i~~g~f~~~~~~~f~~i~~~l~~~-----~D~y~v 743 (797)
T cd04300 669 AEEVGEENIFIFGLTAEEVEALRANGYYPADYYEADPELRRVLDQIASGFFSPGDPGEFRPLVDSLLNG-----NDEYLV 743 (797)
T ss_pred HHHhCcCcEEEeCCCHHHHHHHHHcCCChHhhccCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHccC-----CCeeEe
Confidence 9999999999999999999999988722 3478999999999999999997543 99999999876 899999
Q ss_pred ccchhHHHHHHHHHHHHhcCHhHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcc
Q 003055 793 GKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI 846 (852)
Q Consensus 793 laDF~sY~~aQ~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~~iw~i 846 (852)
++||+||++||++|+++|.|+++|++|||+|||+||+|||||||+|||++||++
T Consensus 744 l~Df~~Y~~~q~~v~~~Y~d~~~W~~~~i~Nia~~G~FSsDRtI~eYa~~IW~~ 797 (797)
T cd04300 744 LADFESYVDAQEKVDALYRDQEEWARKSILNIARSGKFSSDRTIREYAEDIWNV 797 (797)
T ss_pred eccHHHHHHHHHHHHHHccCHHHHHHHHHHHHHccCCcCCcccHHHHHHHhhCc
Confidence 999999999999999999999999999999999999999999999999999986
No 5
>PRK14986 glycogen phosphorylase; Provisional
Probab=100.00 E-value=7.4e-246 Score=2098.85 Aligned_cols=733 Identities=47% Similarity=0.839 Sum_probs=709.5
Q ss_pred CcccCCcchHHHHHhcCcHHHHHHHHHHhCCCHHHHHccCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcce
Q 003055 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLF 80 (852)
Q Consensus 1 ~Efl~Gr~l~n~l~nlgl~~~~~eal~~lg~~le~~~~~E~da~LgnGGLGrLAacfldS~a~L~~P~~GyGlrY~yG~F 80 (852)
|||||||+|.|||+|||+++++++||++||+++|+++++|+||||||||||||||||||||||||+|++||||||+||||
T Consensus 77 ~EfL~Gr~l~nnl~nlg~~~~~~~al~~lg~~l~~l~~~E~Da~LGnGGLGrLAac~ldS~A~LglP~~G~Gi~Y~yG~F 156 (815)
T PRK14986 77 MEFLIGRTLSNALLSLGIYDDVQGALEAMGLDLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMF 156 (815)
T ss_pred hhhhccHHHHHHHHhcCcHHHHHHHHHHcCCCHHHHHhcCCCCCCCCcchHHHHHHHHHHHHhCCCCeEEEEecccCCCe
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCceeeecccccccCCCcccccCCceeeeecCCeeeeCCCCC-eeeeCCeeEEEEEEeecCCCCCCCCeEEEEEE
Q 003055 81 KQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGSDGK-SHWIGGEDIKAVAYDIPIPGYKTKTTINLRLW 159 (852)
Q Consensus 81 ~Q~I~dG~Q~E~pd~Wl~~gnpwei~r~~~~~~V~f~G~~~~~~~G~-~~w~~~~~v~A~~yd~pi~Gy~~~~~~~LRLW 159 (852)
+|+|.||||+|.||+|+..|+|||++|++.+++|+|+|+++.. |. .+|+++++|+|+|||+|||||+|+++|+||||
T Consensus 157 ~Q~I~dG~Q~E~pd~w~~~~~pwe~~r~~~~~~V~f~g~~~~~--g~~~~w~~~~~v~avpyD~pipgy~t~~vn~lRLW 234 (815)
T PRK14986 157 KQNIVNGRQKESPDYWLEYGNPWEFKRHNTRYKVRFGGRIQQE--GKKTRWIETEEILAVAYDQIIPGYDTDATNTLRLW 234 (815)
T ss_pred EEEEECCEEEEcCCCccCCCCceeEecCCcEEEEEeCCEEEec--CceeEeeCCeeEEEEeCCccccCCCCCceEEEEEE
Confidence 9999999999999999999999999999999999999999753 53 34999999999999999999999999999999
Q ss_pred EecCCCCcccccccCCCchhHHHHHhccccccCccccccCCCCCcccchhhhhhhhhhhhchHHHHHHHHHHhcCccccc
Q 003055 160 STMVPSEDFDLSAFNAGDHTKAAEALTNAEKVPICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNW 239 (852)
Q Consensus 160 ~a~v~~~~fdl~~fn~g~y~~a~~~~~~~e~r~It~~LYp~D~~~~GkelRLkQeyfl~saslqdiirrf~~~~gG~~~l 239 (852)
+++ +.++||+..||+|+|..++.+++.+++ ||++|||+|++++||+|||||||||||||+|||||||++.+ ++|
T Consensus 235 ~a~-~~~~fd~~~fn~g~y~~a~~~~n~~e~--Is~~LYp~D~~y~Gk~lRLkQEyfl~~agv~di~r~~~~~~---~~l 308 (815)
T PRK14986 235 SAQ-ASSEINLGKFNQGDYFAAVEDKNHSEN--VSRVLYPDDSTYSGRELRLRQEYFLVSATVQDILSRHYQLH---KTY 308 (815)
T ss_pred Eee-cCcccCHhhcccccHHHHhhccchhhc--cccccCCCCCCcccHHHHHHHHHHhhhHHHHHHHHHHHHhC---CCH
Confidence 999 677999999999999999999999999 99999999999999999999999999999999999999987 689
Q ss_pred ccCCCCceEEeCCCChhhhHHHHHHHHHHhcCCCHHHHHHHhccceeecccCCCCcccccCCHHHHHHhchhHHHHHHHH
Q 003055 240 EEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMI 319 (852)
Q Consensus 240 ~~l~~~~~ihlNDtHpalai~ELmR~Lid~~gl~w~eAw~i~~~~~~fTnHT~vpealEkw~~~l~~~lLprh~~II~~I 319 (852)
+.||++++||||||||||++|||||+|+|++|++|++||+||+++|+||||||||||||+||++||+++||||++||++|
T Consensus 309 ~~l~~~v~ihlNDtHpa~~i~ElmR~L~d~~gl~~~eA~~iv~~~~~fTnHT~lpealE~w~~~l~~~~lpr~l~Ii~eI 388 (815)
T PRK14986 309 DNLADKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEI 388 (815)
T ss_pred hhCCcccEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhEEeecccCChHHhCcCCHHHHHHHccHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhCCCCchhhHHHHhhhccccccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhcccc
Q 003055 320 DEELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGV 399 (852)
Q Consensus 320 n~~f~~~i~~~~~~~~~~~~~~~~~~l~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (852)
|++|+..+.+.||+ +.+++.+|+||+
T Consensus 389 n~~fl~~~~~~~~~-----~~~~~~~~sii~------------------------------------------------- 414 (815)
T PRK14986 389 NDYFLKTLQEQYPN-----DTDLLGRASIID------------------------------------------------- 414 (815)
T ss_pred HHHHHHHHHHhCCC-----cHHHHhhhhccc-------------------------------------------------
Confidence 99999999999999 999999999987
Q ss_pred cccccCCCCCCcccccccCCCCCCccchhhhhhhhhHHHHHhhhhcCCCCCeeeeeeeeeccCcchhHHHHHHHHHHhHh
Q 003055 400 LEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNE 479 (852)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~v~Ma~Lal~~S~~vNGVS~lHsei~k~~ 479 (852)
+ +++++||||+||+++||+|||||+||++|+++.
T Consensus 415 -------------------------------------------~---~~~~~v~Ma~LAl~~S~~vNGVS~lH~evl~~~ 448 (815)
T PRK14986 415 -------------------------------------------E---SNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQS 448 (815)
T ss_pred -------------------------------------------c---CCCCEEeeHHHHhhccchhhHHHHHHHHHHHHH
Confidence 2 122479999999999999999999999999999
Q ss_pred hhhhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHH
Q 003055 480 VFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKV 559 (852)
Q Consensus 480 ~f~~f~~l~P~kf~n~TNGVt~rrWl~~~Np~L~~Li~~~ig~~~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L 559 (852)
||++|+++||+||.|||||||+|||+.+|||+|++||+++||+ +|.+++++|++|+++.+|++|+++|+++|++||.+|
T Consensus 449 ~f~df~~l~P~kf~niTNGV~~rrWl~~~np~L~~Li~~~ig~-~W~~d~~~l~~l~~~~~d~~f~~~l~~vk~~nK~~L 527 (815)
T PRK14986 449 LFADFAKIFPGRFCNVTNGVTPRRWLALANPSLSAVLDEHIGR-TWRTDLSQLSELKQHCDYPMVNHAVRQAKLENKKRL 527 (815)
T ss_pred HHHHHHhhCCCcccccCCCCChhhHhhhcCHHHHHHHHHhcCc-hhhhChHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997 899999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHH
Q 003055 560 VSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVK 639 (852)
Q Consensus 560 ~~~I~~~~g~~ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk 639 (852)
++||++++|+.+||++|||+|||||||||||+||||+|++||.+|++ +|.. +++||||||||||||+|.+||.|||
T Consensus 528 ~~~i~~~~g~~ldp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~-~p~~---~~~P~~~IFaGKAaP~y~~aK~iIk 603 (815)
T PRK14986 528 AEYIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKA-DPDA---KWVPRVNIFAGKAASAYYMAKHIIH 603 (815)
T ss_pred HHHHHHHhCCccCcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHh-CCCc---CCCCeEEEEeecCCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997 6653 3789999999999999999999999
Q ss_pred HHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccc
Q 003055 640 FITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQ 719 (852)
Q Consensus 640 ~I~~va~~vn~Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e 719 (852)
+|++||++||+||+++++|||||||||+|++||+||||||||+||||||+||||||||||||||+|||||||||||||++
T Consensus 604 ~I~~va~~in~Dp~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e 683 (815)
T PRK14986 604 LINDVAKVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLE 683 (815)
T ss_pred HHHHHHHHhccChhhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceEecccchhhhhhhhhhc--CCCCCCCChhHHHHHHHHhcCCCCccc---HHHHHHHhccCCCCCCCccccccc
Q 003055 720 EVGEENFFLFGARAHEIAGLRKER--SEGKFVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGK 794 (852)
Q Consensus 720 ~vg~eN~f~FG~~~~ev~~l~~~~--~~~~~~~~~~~~~v~d~i~~g~f~~~~---~~~l~~~L~~~~~~~~~D~y~vla 794 (852)
+||++|+|+||++++||..+|.++ +...|..+|.+++++|+|.+|+|++.+ |++||++|+.+ +|+|||++
T Consensus 684 ~vG~eN~~~fG~~~~ev~~~~~~~Y~~~~~y~~~~~l~~~~d~i~~g~f~~~~~~~f~~i~~~l~~~-----~D~y~vl~ 758 (815)
T PRK14986 684 HVGEENIFIFGNTAEEVEALRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEEPGRYRDLVDSLINF-----GDHYQVLA 758 (815)
T ss_pred hcCCCcEEEeCCCHHHHHHHHHcCCChhhhccCCHHHHHHHHHHhcCCCCCCCchhHHHHHHHhccC-----CCeeEeec
Confidence 999999999999999999999876 223377899999999999999998654 99999999875 89999999
Q ss_pred chhHHHHHHHHHHHHhcCHhHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcccccCC
Q 003055 795 DFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 851 (852)
Q Consensus 795 DF~sY~~aQ~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~~iw~i~p~~~ 851 (852)
||+||++||++|+++|.|+++|++|||.|||+||+|||||||+|||++||+++||+.
T Consensus 759 Df~sY~~aq~~v~~~y~d~~~W~~~~i~Nia~~G~FSsDRtI~~Ya~~IW~~~p~~~ 815 (815)
T PRK14986 759 DYRSYVDCQDKVDELYRNQEEWTRKAMLNIANMGYFSSDRTIKEYADEIWHIDPVRL 815 (815)
T ss_pred cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCcCCchhHHHHHHHhhCCCccCC
Confidence 999999999999999999999999999999999999999999999999999999874
No 6
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=100.00 E-value=7.9e-242 Score=2044.24 Aligned_cols=707 Identities=51% Similarity=0.899 Sum_probs=638.6
Q ss_pred HHHHhCCCHHHHHccCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcceeEEecCCceeeecccccccCCCcc
Q 003055 25 ALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWE 104 (852)
Q Consensus 25 al~~lg~~le~~~~~E~da~LgnGGLGrLAacfldS~a~L~~P~~GyGlrY~yG~F~Q~I~dG~Q~E~pd~Wl~~gnpwe 104 (852)
||++||+++++|+++|+||||||||||||||||||||||||+|++||||||+||+|+|+|.||+|+|.||+||..|||||
T Consensus 1 Al~~lg~~~~~l~~~E~da~LGNGGLGRLAacfldSlAtl~~p~~GygirY~yG~F~Q~i~dG~QvE~pd~Wl~~g~pWe 80 (713)
T PF00343_consen 1 ALKELGFDLEELEEQEPDAGLGNGGLGRLAACFLDSLATLGIPAYGYGIRYEYGLFKQKIVDGWQVELPDNWLRYGNPWE 80 (713)
T ss_dssp HHHHTT--HHHHHTTS--EEESSSHHHHHHHHHHHHHHHTT-EEEEEEE--SCESEEEEEETTEEEEEEEBTTTTG-TTS
T ss_pred ChhHhCCCHHHHHhhCcCccccCcccchhHHHHHHHHHhCCCCceEEEeeecCCCceeEeecCCcccCCCCccCCCCceE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceeeeecCCeeeeCCCCCe-eeeCCeeEEEEEEeecCCCCCCCCeEEEEEEEecCCCCcccccccCCCchhHHHH
Q 003055 105 IERNDVSYPVKFYGKIVPGSDGKS-HWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKAAE 183 (852)
Q Consensus 105 i~r~~~~~~V~f~G~~~~~~~G~~-~w~~~~~v~A~~yd~pi~Gy~~~~~~~LRLW~a~v~~~~fdl~~fn~g~y~~a~~ 183 (852)
++|++.+|+|+|+|+++ +.+|+. +|+++++|+|+|||+|||||+|++||+||||+|+ ++++|||..||.|||.+|++
T Consensus 81 ~~r~~~~~~V~f~G~v~-~~~~~~~~~~~~~~v~av~yD~pi~Gy~~~~vn~LRLw~a~-~~~~fd~~~fn~gdy~~a~~ 158 (713)
T PF00343_consen 81 IRRPDESYEVKFGGRVE-DDGGRKVRWEDGETVLAVPYDMPIPGYRTKTVNTLRLWSAE-PSEEFDLESFNRGDYIKAVE 158 (713)
T ss_dssp EEEGGGEEEEEESEEEE--EETTEEEEESCEEEEEEEEEEEEE-SSSS-EEEEEEEEEE-ESSSTTHHHHHTTCHHHHHH
T ss_pred EecCCceEEEeccceEE-ecCCCcccccCCeEEEEEecCceeecCCCCceEEEEEeccC-CCcccChhhcCCCcHHHHHH
Confidence 99999999999999998 344554 5999999999999999999999999999999999 88899999999999999999
Q ss_pred HhccccccCccccccCCCCCcccchhhhhhhhhhhhchHHHHHHHHHHhcCcccccccCCCCceEEeCCCChhhhHHHHH
Q 003055 184 ALTNAEKVPICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELI 263 (852)
Q Consensus 184 ~~~~~e~r~It~~LYp~D~~~~GkelRLkQeyfl~saslqdiirrf~~~~gG~~~l~~l~~~~~ihlNDtHpalai~ELm 263 (852)
+++.+|+ ||+||||+|++++||+|||||||||||||||||||||++.+ .+|+.||++++||||||||||+|||||
T Consensus 159 ~~~~~e~--is~vLYP~d~~~~Gk~LRLkQqyf~vsa~lqdiir~~~~~~---~~~~~~~~~~~ihlNdtHpa~ai~Elm 233 (713)
T PF00343_consen 159 EKNRAEN--ISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKSH---GDLREFPDKVVIHLNDTHPAFAIPELM 233 (713)
T ss_dssp HHHHHHG--GGTBSS-SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---CCGGGHHHHEEEEEESSTTTTHHHHHH
T ss_pred HHHHhhc--eeeecCCCCccccchhhhhhhHhhhhhhHHHHHHHHHHHhC---CChHHCCcceEEeecCCccHHHHHHHH
Confidence 9999999 99999999999999999999999999999999999999998 699999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHhccceeecccCCCCcccccCCHHHHHHhchhHHHHHHHHhHHHHHHHHHhhCCCCchhhHHHH
Q 003055 264 RILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRL 343 (852)
Q Consensus 264 R~Lid~~gl~w~eAw~i~~~~~~fTnHT~vpealEkw~~~l~~~lLprh~~II~~In~~f~~~i~~~~~~~~~~~~~~~~ 343 (852)
|+|||++|++|++||+||+++|+||||||||||||+||++||+++||||+|||++||++|+..+...+|+ +.+++
T Consensus 234 R~L~de~gl~~~eA~eiv~~~~~fTnHT~vpealE~wp~~l~~~~Lpr~~~ii~ein~~f~~~~~~~~~~-----d~~~~ 308 (713)
T PF00343_consen 234 RILMDEEGLSWDEAWEIVRKTFAFTNHTPVPEALEKWPVDLFERYLPRHLEIIYEINRRFLDELRRKYPG-----DEDQI 308 (713)
T ss_dssp HHHHHTT---HHHHHHHHHHHEEEEE--SSGGGS-EEEHHHHHHHSHHHHHHHHHHHHHHHHHHHHHSTT------HHHH
T ss_pred HHHHHHcCCCHHHHHHHHHhceeeeccccccccccccCHHHHHHHChHHHHHHHHHhHHHHHHHHHHhcC-----cchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 89999
Q ss_pred hhhccccccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhcccccccccCCCCCCcccccccCCCCCC
Q 003055 344 KETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPV 423 (852)
Q Consensus 344 ~~l~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (852)
.+|++++
T Consensus 309 ~~l~ii~------------------------------------------------------------------------- 315 (713)
T PF00343_consen 309 RRLSIIE------------------------------------------------------------------------- 315 (713)
T ss_dssp HHHSSEE-------------------------------------------------------------------------
T ss_pred hhccccc-------------------------------------------------------------------------
Confidence 9999987
Q ss_pred ccchhhhhhhhhHHHHHhhhhcCCCCCeeeeeeeeeccCcchhHHHHHHHHHHhHhhhhhhhhhcCCCcccccccccccc
Q 003055 424 DEELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRR 503 (852)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~v~Ma~Lal~~S~~vNGVS~lHsei~k~~~f~~f~~l~P~kf~n~TNGVt~rr 503 (852)
+ ++++.||||+||+++||+|||||+|||+|+|+++|++|+++||+||+|||||||+||
T Consensus 316 -------------------~---~~~~~~~Ma~LAl~~S~~vNGVS~LH~ev~k~~~f~~f~~l~P~kf~nvTNGVh~rr 373 (713)
T PF00343_consen 316 -------------------E---GNSKRFRMANLALRGSHSVNGVSKLHGEVLKQMVFKDFYELWPEKFGNVTNGVHPRR 373 (713)
T ss_dssp -------------------T---SSSCEEEHHHHHHHCESEEEESSHHHHHHHHHTTTHHHHHHSGGGEEE----B-TCC
T ss_pred -------------------c---cchhhcchhHHHHHhcccccchHHHHHHHHHHHHhhhhhhcCCceeeccccCccCcc
Confidence 2 345789999999999999999999999999999999999999999999999999999
Q ss_pred cccccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCccccccccc
Q 003055 504 WIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKR 583 (852)
Q Consensus 504 Wl~~~Np~L~~Li~~~ig~~~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~I~~~~g~~ldpdslfdvq~kR 583 (852)
|++.|||+|++||+++||+ +|.+|++.|++|.++++|+.|+++|+++|+++|.+|+++|++++|+.+||++|||+||||
T Consensus 374 Wl~~~nP~L~~L~~~~iG~-~W~~d~~~l~~l~~~~dd~~~~~~~~~vK~~~K~rl~~~i~~~~~~~ldp~slfdv~~rR 452 (713)
T PF00343_consen 374 WLSQANPELSELITEYIGD-DWRTDLEQLEKLEKFADDEEFQEELREVKQENKERLAEYIKKRTGVELDPDSLFDVQARR 452 (713)
T ss_dssp CCCCTSHHHHHHHHHHHTS-GGGCSGGGGGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEEEEES-
T ss_pred cccccCHHHHHHHHHHhcc-ccccCHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhh
Confidence 9999999999999999996 999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEe
Q 003055 584 IHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFV 663 (852)
Q Consensus 584 ~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~v~~~lKVvFl 663 (852)
|||||||+||+|++++||.+||+ +|... .+||||||||||||+|.+||+|||+|++||++||+||+++++||||||
T Consensus 453 ~heYKRq~LniL~ii~~y~rik~-~p~~~---~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~~~lkVvFl 528 (713)
T PF00343_consen 453 FHEYKRQLLNILHIIDRYNRIKN-NPNKK---IRPVQFIFAGKAHPGDYMGKEIIKLINNVAEVINNDPEVGDRLKVVFL 528 (713)
T ss_dssp SCCCCTHHHHHHHHHHHHHHHHH-STTSC---CS-EEEEEE----TT-HHHHHHHHHHHHHHHHHCT-TTTCCGEEEEEE
T ss_pred cccccccCcccccHHHHHHHHHh-cccCC---CCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHHhcChhhccceeEEee
Confidence 99999999999999999999998 66633 789999999999999999999999999999999999999999999999
Q ss_pred cCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecccchhhhhhhhhhc
Q 003055 664 PDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKER 743 (852)
Q Consensus 664 enY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG~~~~ev~~l~~~~ 743 (852)
|||||++|++||||||||+||||||+||||||||||||||+|||||||||||||.+++|++|+|+||++++||.+++.++
T Consensus 529 enYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~fiFG~~~~ev~~~~~~g 608 (713)
T PF00343_consen 529 ENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENIFIFGLTAEEVEELRKNG 608 (713)
T ss_dssp TT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGSEEES-BHHHHHHHHHHT
T ss_pred cCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcEEEcCCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred --CCCCCCCChhHHHHHHHHhcCCCCc---ccHHHHHHHhccCCCCCCCcccccccchhHHHHHHHHHHHHhcCHhHHHH
Q 003055 744 --SEGKFVPDARFEEVKKFVKSGVFGS---YNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTR 818 (852)
Q Consensus 744 --~~~~~~~~~~~~~v~d~i~~g~f~~---~~~~~l~~~L~~~~~~~~~D~y~vlaDF~sY~~aQ~~v~~~Y~d~~~W~~ 818 (852)
+...|..+|++++|+|+|.+|.|++ ..|++||+++..+ +|+|||++||+||++||++|+++|.|+++|++
T Consensus 609 Y~~~~~y~~~~~l~~vld~i~~g~f~~~~~~~f~~i~~~~~~~-----~D~y~vl~Df~~Y~~~q~~v~~~Y~d~~~W~~ 683 (713)
T PF00343_consen 609 YNPREYYENDPELKRVLDQIISGFFSPGDPDEFKPIYDSLLMY-----NDEYLVLADFESYVEAQEKVDKAYRDPKKWNK 683 (713)
T ss_dssp -HHHHHHHHSHHHHHHHHHHHHTTTTTTSTTTTHHHHHHCHHH-----TTTT-HHHHHHHHHHHHHHHHHHHCSHHHHHH
T ss_pred CCcccccccCHHHHHHHHHHhcCCCCCCCchhHHHHHhCcCCC-----CCcchhhhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 2223678999999999999999987 3599999996655 89999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCChhHHHHHHHHHHhcccc
Q 003055 819 MSIMNTAGSSKFSSDRTIQEYARDIWNIIP 848 (852)
Q Consensus 819 ~~i~niA~sg~FSSDRtI~eYa~~iw~i~p 848 (852)
|||+|||+||+|||||||+|||++||+|+|
T Consensus 684 ~~i~Nia~~g~FssDrtI~~Ya~~IW~~~p 713 (713)
T PF00343_consen 684 MSILNIARSGKFSSDRTIREYAEDIWNVKP 713 (713)
T ss_dssp HHHHHHHCGGGGBHHHHHHHHHHHTTTS--
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999987
No 7
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-201 Score=1712.16 Aligned_cols=673 Identities=47% Similarity=0.777 Sum_probs=633.1
Q ss_pred CcccCCcchHHHHHhcCcHHHHHHHHHHhCCCHHHHHccCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcce
Q 003055 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLF 80 (852)
Q Consensus 1 ~Efl~Gr~l~n~l~nlgl~~~~~eal~~lg~~le~~~~~E~da~LgnGGLGrLAacfldS~a~L~~P~~GyGlrY~yG~F 80 (852)
||||+||+|.|||+|||+.+.++++|+++|+++.++...|+|+++| ||||||||||||||||||+|++||||||+||||
T Consensus 69 ~efL~grl~~~~l~n~g~~~~~~~~l~~~~~~~~e~~~~e~~p~lg-GGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF 147 (750)
T COG0058 69 MEFLIGRLLGNNLWNLGIYDDVQEALKELGYFLMEFGEHESDPGLG-GGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYF 147 (750)
T ss_pred HHHHHHHhhhcchhhhcchHHHHhhHHhhhccHHHHhhcccCcccc-ccHHHHHHhHHHHHHhcCCCceEEEeeecCCce
Confidence 7999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred eEEecCCceeeecccccccCCCcccccCCceeeeecCCeeeeCCCCCeeeeCCeeEEEEEEeecCCCCCCCCeEEEEEEE
Q 003055 81 KQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWS 160 (852)
Q Consensus 81 ~Q~I~dG~Q~E~pd~Wl~~gnpwei~r~~~~~~V~f~G~~~~~~~G~~~w~~~~~v~A~~yd~pi~Gy~~~~~~~LRLW~ 160 (852)
+|++.||||+|.|+.|+..|||||+.|+. + |+|||+||+||++ ++|+||||+
T Consensus 148 ~Q~~~dG~Q~E~p~~w~~~~~pwe~~r~~------------------------~---a~~~d~~V~g~~~-~~~~lrlW~ 199 (750)
T COG0058 148 RQSDVDGWQVELPDEWLKYGNPWEFLRDA------------------------E---GVPYDVPVPGYDN-RVVTLRLWQ 199 (750)
T ss_pred eeeccCCceEecchhhhccCCcceeeccc------------------------C---CceeeeeEEeccC-cEEEEEEEE
Confidence 99999999999999999999999998751 1 5799999999999 999999999
Q ss_pred ecCCCCcccccccCCCchhHHHHHhccccccCccccccCCCCCcccchhhhhhhhhhhhchHHHHHHHHHHhcCcccccc
Q 003055 161 TMVPSEDFDLSAFNAGDHTKAAEALTNAEKVPICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWE 240 (852)
Q Consensus 161 a~v~~~~fdl~~fn~g~y~~a~~~~~~~e~r~It~~LYp~D~~~~GkelRLkQeyfl~saslqdiirrf~~~~gG~~~l~ 240 (852)
++++..+|+|..||.|+ +.+.+++ ||++|||+|+ ++|||||||||||||+|+|++++..+++ +++
T Consensus 200 a~~~~~~~~l~~~n~~e------~~~~~~~--iT~~LYp~Ds----~elRl~Qeyfl~~agvq~I~~~~~~~~~---~~~ 264 (750)
T COG0058 200 AQVGRVPLYLLDFNVGE------NKNDARN--ITRVLYPGDS----KELRLKQEYFLGSAGVQDILARGHLEHH---DLD 264 (750)
T ss_pred EecCccceEeecCCCcc------cchhhhh--HHhhcCCCCc----HHHHHhhhheeeeHHHHHHHHHhhhccc---ccc
Confidence 99877799999999983 3355666 9999999998 8999999999999999999999655541 677
Q ss_pred cCCCCceEEeCCCChhhhHHHHHHHHHHhcCCCHHHHHHHhccceeecccCCCCcccccCCHHHHHHhchhHHHHHHHHh
Q 003055 241 EFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMID 320 (852)
Q Consensus 241 ~l~~~~~ihlNDtHpalai~ELmR~Lid~~gl~w~eAw~i~~~~~~fTnHT~vpealEkw~~~l~~~lLprh~~II~~In 320 (852)
.++ +|||||||+||+|||||+|+|++|++|++||++|+++|+||||||||||||+||++||+++||||++||++||
T Consensus 265 ~~~----~~lNdtHpa~~i~ElmRll~d~~g~~~~~A~~~~~~~~~yTnHTplpeale~wp~~l~~~~lpr~~~ii~~in 340 (750)
T COG0058 265 VLA----DHLNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVELFKKLLPRHLQIIYEIN 340 (750)
T ss_pred chh----hhhcCCChhHhHHHHHHHHHHHhcCCHHHHHHHHhheeeeecCCCchhhhccCCHHHHHHHhhhhhhhHHHHH
Confidence 666 4599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCchhhHHHHhhhccccccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhccccc
Q 003055 321 EELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVL 400 (852)
Q Consensus 321 ~~f~~~i~~~~~~~~~~~~~~~~~~l~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (852)
.+|+..++..+|+ + ++.++++|+
T Consensus 341 ~~~l~~~~~~~~~-----~--~~~~~~~i~-------------------------------------------------- 363 (750)
T COG0058 341 ARFLPEVRLLYLG-----D--LIRRGSPIE-------------------------------------------------- 363 (750)
T ss_pred hhhhHHHHhhccc-----c--ccccCCccc--------------------------------------------------
Confidence 9999999988887 3 555555544
Q ss_pred ccccCCCCCCcccccccCCCCCCccchhhhhhhhhHHHHHhhhhcCCCCCeeeeeeeeeccCcchhHHHHHHHHHHhHhh
Q 003055 401 EEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEV 480 (852)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~v~Ma~Lal~~S~~vNGVS~lHsei~k~~~ 480 (852)
.||||+||+++||+|||||+||+||+|+|.
T Consensus 364 --------------------------------------------------~v~Ma~lal~~S~~vNGVsklH~el~k~~~ 393 (750)
T COG0058 364 --------------------------------------------------EVNMAVLALVGSHSVNGVSKLHSELSKKMW 393 (750)
T ss_pred --------------------------------------------------ceehhhhhhhhhhhhHhHHHHHHHHHHHHH
Confidence 299999999999999999999999999999
Q ss_pred hhhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHH
Q 003055 481 FNEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVV 560 (852)
Q Consensus 481 f~~f~~l~P~kf~n~TNGVt~rrWl~~~Np~L~~Li~~~ig~~~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~ 560 (852)
|++|+++||+||+|||||||+|||+..|||.|++++++.+|. .|..+++.+.++..+++|+.|++.|+.+|++||.+|+
T Consensus 394 ~~~~~~~~p~~i~nvTNGIt~rrWl~~~n~~L~~~~~~~ig~-~W~~~~~~l~~l~~~a~~~~~~e~i~~iK~~nk~~La 472 (750)
T COG0058 394 FADFHGLYPEKINNVTNGITPRRWLAPANPGLADLLDEKIGD-EWLNDLDILDELLWFADDKAFRELIAEIKRENKKRLA 472 (750)
T ss_pred HHHhcccCccccccccCCcCCchhhhhhhHHHHHHHhhhhhh-hhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccC-CeEEEEeccCCCCcHHHHHHHH
Q 003055 561 SFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFV-PRVCIFGGKAFATYVQAKRIVK 639 (852)
Q Consensus 561 ~~I~~~~g~~ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~-P~~~IFaGKA~P~y~~aK~iIk 639 (852)
+++++++|+.+||++|||+|||||||||||+||+++++++|..|++ + .+ |+|+||||||||+|+.||+|||
T Consensus 473 ~~i~~~~gi~~~p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~-d-------~~prv~~iFaGKAhP~y~~aK~iIk 544 (750)
T COG0058 473 EEIADRTGIEVDPNALFDGQARRIHEYKRQLLNLLDIERLYRILKE-D-------WVPRVQIIFAGKAHPADYAAKEIIK 544 (750)
T ss_pred HHhhhhcCCccCCCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhc-C-------CCCceEEEEeccCCCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999984 2 23 4555999999999999999999
Q ss_pred HHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccc
Q 003055 640 FITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQ 719 (852)
Q Consensus 640 ~I~~va~~vn~Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e 719 (852)
+|+++|+++|+ ++|||||||||||+|++||||||||+||||||+||||||||||||||+|||||||||||||++
T Consensus 545 ~I~~~a~~in~------~lkVvFl~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e 618 (750)
T COG0058 545 LINDVADVINN------KLKVVFLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYE 618 (750)
T ss_pred HHHHHHHhhcc------cceEEEeCCCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHH
Confidence 99999999997 789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceEecccchhhhhhhhhhcCCCC---CCCChhHHHHHHHHhcCCCCccc---HHHHHHHhcc-CCCCCCC-cccc
Q 003055 720 EVGEENFFLFGARAHEIAGLRKERSEGK---FVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEG-NEGFGQA-DYFL 791 (852)
Q Consensus 720 ~vg~eN~f~FG~~~~ev~~l~~~~~~~~---~~~~~~~~~v~d~i~~g~f~~~~---~~~l~~~L~~-~~~~~~~-D~y~ 791 (852)
++|++|+|+||.+++++..++.++.+.. +..++.++.+++.+.+|.|++.+ |+++|++|.. . + |+||
T Consensus 619 ~vg~~N~~~fG~~~~~v~~~~~~~~~~~~~y~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~sl~~~~-----~~dr~~ 693 (750)
T COG0058 619 HVGGENGWIFGETVEEVDALRADGYDPNALYYELENEVKPVLDEIIDGRFSPGWKSRFKNLIDSLLPKF-----GTDRMM 693 (750)
T ss_pred hcCCCceEEeCCchhhHHHHHhcccccHHHHHHHhHHHHHHHHHHhcccCCcccHHHHHHHHHHhhhcc-----CccHHH
Confidence 9999999999999999999998763322 45688999999999999998754 8999999984 3 5 9999
Q ss_pred cccchhHHHHHHHHHHHHhcCHhHHHHHHHHhhhcCCCCChhHHHHHHHHHHhcccc
Q 003055 792 VGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 848 (852)
Q Consensus 792 vlaDF~sY~~aQ~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~~iw~i~p 848 (852)
+++||.+|++||++++..|.++++|++++|.|||.||+|||||||++||.+||+++|
T Consensus 694 ~~yd~~~Y~~aq~~~~~~~~~~~~W~~~~i~nia~~g~fssDrtI~~Y~~~Iw~~~~ 750 (750)
T COG0058 694 VLYDFKAYVPAQEEVDALYRDQEAWTKKAILNIANSGLFSSDRTIREYAGEIWHIGP 750 (750)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHcCCCCchhHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999999999999999999999976
No 8
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=100.00 E-value=2.6e-135 Score=1184.15 Aligned_cols=569 Identities=25% Similarity=0.401 Sum_probs=495.1
Q ss_pred CCHHHHHccCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcceeEEec-CCceeeecccccccCCCcccccCC
Q 003055 31 QSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRIT-KDGQEEVAEDWLELGNPWEIERND 109 (852)
Q Consensus 31 ~~le~~~~~E~da~LgnGGLGrLAacfldS~a~L~~P~~GyGlrY~yG~F~Q~I~-dG~Q~E~pd~Wl~~gnpwei~r~~ 109 (852)
||||..+++ .+++||||||||||||||||||||+|++||||+|+||||+|+|+ ||||+|.++.|...+.||+..
T Consensus 91 Fs~E~gl~~--~lpiYsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~--- 165 (778)
T cd04299 91 FSMEFGLHE--SLPIYSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPV--- 165 (778)
T ss_pred eccccccCC--CCCccCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEE---
Confidence 788888887 57799999999999999999999999999999999999999999 999999999999999999752
Q ss_pred ceeeeecCCeeeeCCCCCeeeeCCeeEEEEEEeecCCCCCCCCeEEEEEEEecCCCCcccccccCCCchhHHHHHhcccc
Q 003055 110 VSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKAAEALTNAE 189 (852)
Q Consensus 110 ~~~~V~f~G~~~~~~~G~~~w~~~~~v~A~~yd~pi~Gy~~~~~~~LRLW~a~v~~~~fdl~~fn~g~y~~a~~~~~~~e 189 (852)
.+.+|+. +...+|+||+ ++++|+|.++++ .+++++|+++.|. |...
T Consensus 166 ------------~~~~G~~----------~~v~v~l~g~----~v~~rvw~~~vg--~v~lylLDtd~~~------n~~~ 211 (778)
T cd04299 166 ------------RDADGEP----------VRVSVELPGR----TVYARVWKAQVG--RVPLYLLDTDIPE------NSPD 211 (778)
T ss_pred ------------ecCCCCe----------EEEEEeeCCC----ceEEEEEEEEcC--CCCEEEecCCccc------cchh
Confidence 2345652 1235889997 678999999976 4789999999985 4455
Q ss_pred ccCccccccCCCCCcccchhhhhhhhhhhhchHHHHHHHHHHhcCcccccccCCCCceEEeCCCChhhhHHHHHHHHHHh
Q 003055 190 KVPICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRILIDL 269 (852)
Q Consensus 190 ~r~It~~LYp~D~~~~GkelRLkQeyfl~saslqdiirrf~~~~gG~~~l~~l~~~~~ihlNDtHpalai~ELmR~Lid~ 269 (852)
+|.||++|||+| +++|||||||||+||++.+ +++ | + ++.+|||||+||||+++||||+||++
T Consensus 212 ~R~iT~~LYg~D-----~~~Rl~Qe~~Lg~agl~~L-r~l----g----~----~pdViH~ND~Haal~~lE~~R~ll~~ 273 (778)
T cd04299 212 DRGITDRLYGGD-----QETRIQQEILLGIGGVRAL-RAL----G----I----KPTVYHMNEGHAAFLGLERIRELMAE 273 (778)
T ss_pred hcccccCCCCCc-----HHHHHHHHHHHHHHHHHHH-HHh----C----C----CCeEEEeCCCcHHHHHHHHHHHHHHH
Confidence 677999999998 5889999999999999975 422 1 1 46799999999999999999999998
Q ss_pred cCCCHHHHHHHhccceeecccCCCCcccccCCHHHHHHhchhHHHHHHHHhHHHHHHHHHhhCCCCchhhHHHHhhhccc
Q 003055 270 KGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLKETRIL 349 (852)
Q Consensus 270 ~gl~w~eAw~i~~~~~~fTnHT~vpealEkw~~~l~~~lLprh~~II~~In~~f~~~i~~~~~~~~~~~~~~~~~~l~ii 349 (852)
+|++|++||++|+.+++||||||+|+|||+||.++|+++||+|++ .++++.+.+..+++.
T Consensus 274 ~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~l~~~~~~~~~~--------------------~lgl~~~~~~~lg~e 333 (778)
T cd04299 274 GGLSFDEALEAVRASTVFTTHTPVPAGHDRFPPDLVERYFGPYAR--------------------ELGLSRDRFLALGRE 333 (778)
T ss_pred cCCCHHHHHHhhCCeEEEecCCchHHHhhhCCHHHHHHHhhHHHH--------------------HcCCCHHHHhhhccc
Confidence 899999999999999999999999999999999999999998763 123477777777763
Q ss_pred cccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhcccccccccCCCCCCcccccccCCCCCCccchhh
Q 003055 350 ENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELES 429 (852)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (852)
.
T Consensus 334 ~------------------------------------------------------------------------------- 334 (778)
T cd04299 334 N------------------------------------------------------------------------------- 334 (778)
T ss_pred c-------------------------------------------------------------------------------
Confidence 2
Q ss_pred hhhhhhHHHHHhhhhcCCCCCeeeeeeeeeccCcchhHHHHHHHHHHhHhhhhhhhhhcCCC---ccccccccccccccc
Q 003055 430 EQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEK---FQNKTNGVTPRRWIR 506 (852)
Q Consensus 430 ~~~~~~~~~~~~~e~~~~~~~~v~Ma~Lal~~S~~vNGVS~lHsei~k~~~f~~f~~l~P~k---f~n~TNGVt~rrWl~ 506 (852)
. +++.+.|||++|||++|++|||||+||++|+|+ ||++|+..||.+ |.+||||||++||+
T Consensus 335 -------------~--~~~~~~~nM~~laL~~S~~vNgVS~lHg~vsr~-mf~~~~~g~p~~~~~i~~ITNGVh~~~W~- 397 (778)
T cd04299 335 -------------P--GDDPEPFNMAVLALRLAQRANGVSRLHGEVSRE-MFAGLWPGFPVEEVPIGHVTNGVHVPTWV- 397 (778)
T ss_pred -------------c--cCccCceeHHHHHHHhcCeeeeecHHHHHHHHH-HhhhhhccCCcccCceeceeCCcchhhhc-
Confidence 0 012357999999999999999999999999997 799998888875 99999999999998
Q ss_pred ccChhHHHHHHhhcCCCccccCcchHHHhhh--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHc-----------------
Q 003055 507 FCNPDLSSILTSWLGTEDWVTNTGKLAELRK--FADNEDLQSQFRAAKRNNKMKVVSFIKEKT----------------- 567 (852)
Q Consensus 507 ~~Np~L~~Li~~~ig~~~W~~d~~~l~~l~~--~~~D~~f~~~~~~vK~~nK~~L~~~I~~~~----------------- 567 (852)
||++++||++++|+ +|.++++....+.. .++|+++ | ++|+++|.+|+++|++++
T Consensus 398 --~P~~~~l~~~~~g~-~w~~~~~~~~~~~~~~~i~d~~l---w-~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~ 470 (778)
T cd04299 398 --APEMRELYDRYLGG-DWRERPTDPELWEAVDDIPDEEL---W-EVRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEA 470 (778)
T ss_pred --CHHHHHHHHHhcCc-chhhccchHHHHhhhcCCCcHHH---H-HHHHHHHHHHHHHHHHHHHhhhhhcCCchhhhhhc
Confidence 79999999999997 89999876554444 3567775 6 699999999999999887
Q ss_pred CCcCCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhh
Q 003055 568 GYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGAT 647 (852)
Q Consensus 568 g~~ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~ 647 (852)
+..+||++|||+||||||+|||++| ||++++||.+|+. ++ + .|+||||||||||+|..||+|||+|+++++
T Consensus 471 ~~~ldpd~ltigfarRfa~YKR~~L-il~dl~rl~~il~-~~-~-----~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~- 541 (778)
T cd04299 471 DDVLDPNVLTIGFARRFATYKRATL-LLRDPERLKRLLN-DP-E-----RPVQFIFAGKAHPADEPGKELIQEIVEFSR- 541 (778)
T ss_pred CCccCCCccEEeeeecchhhhhHHH-HHHHHHHHHHHhh-CC-C-----CCeEEEEEEecCccchHHHHHHHHHHHHHh-
Confidence 5669999999999999999999999 9999999999985 32 2 399999999999999999999999999996
Q ss_pred hcCCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceE
Q 003055 648 VNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFF 727 (852)
Q Consensus 648 vn~Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f 727 (852)
||.+.+ ||||+|||||++|++|+||||||+|+|+||+||||||||||||||+||+||+||||.|.. ...|+|
T Consensus 542 ---~p~~~~--kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~---~g~nGw 613 (778)
T cd04299 542 ---RPEFRG--RIVFLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY---DGENGW 613 (778)
T ss_pred ---CcCCCC--cEEEEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc---CCCCce
Confidence 999999 999999999999999999999999999999999999999999999999999999999987 348999
Q ss_pred ecccchhhhhhhhhhcCCCCCCCChhHHHHHHHHhcCCCCcccHHHHHHHhccCCCCCCCcccccccchhHHHHHHHHHH
Q 003055 728 LFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVD 807 (852)
Q Consensus 728 ~FG~~~~ev~~l~~~~~~~~~~~~~~~~~v~d~i~~g~f~~~~~~~l~~~L~~~~~~~~~D~y~vlaDF~sY~~aQ~~v~ 807 (852)
.||..... .++. .++ ..|...||+.|+. +.++
T Consensus 614 aig~~~~~--------------~~~~--------~~d---~~da~~Ly~~Le~-----------------------~i~p 645 (778)
T cd04299 614 AIGDGDEY--------------EDDE--------YQD---AEEAEALYDLLEN-----------------------EVIP 645 (778)
T ss_pred EeCCCccc--------------cChh--------hcc---hhhHHHHHHHHHH-----------------------HHHH
Confidence 99985321 1111 111 2369999999985 3566
Q ss_pred HHhcC-----HhHHHHHHHHhhhc-CCCCChhHHHHHHHHHHh
Q 003055 808 EAYCD-----QKRWTRMSIMNTAG-SSKFSSDRTIQEYARDIW 844 (852)
Q Consensus 808 ~~Y~d-----~~~W~~~~i~niA~-sg~FSSDRtI~eYa~~iw 844 (852)
.+|.. +.+|.+||..+|+. ...||++||++||+++.|
T Consensus 646 ~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y 688 (778)
T cd04299 646 LFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFY 688 (778)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhH
Confidence 77774 88999999999996 699999999999999998
No 9
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=100.00 E-value=3.6e-131 Score=1127.92 Aligned_cols=568 Identities=25% Similarity=0.394 Sum_probs=494.5
Q ss_pred CCHHHHHccCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcceeEEec-CCceeeecccccccCCCcccccCC
Q 003055 31 QSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRIT-KDGQEEVAEDWLELGNPWEIERND 109 (852)
Q Consensus 31 ~~le~~~~~E~da~LgnGGLGrLAacfldS~a~L~~P~~GyGlrY~yG~F~Q~I~-dG~Q~E~pd~Wl~~gnpwei~r~~ 109 (852)
||||..+++ .+++||||||||||||||||||||+|++||||+|+||||+|+|+ +|||+|.|++|+..+.||+..
T Consensus 4 f~~E~g~~~--~~p~ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~--- 78 (601)
T TIGR02094 4 FSMEYGLHE--SLPIYSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKV--- 78 (601)
T ss_pred EeeccccCC--CCCccCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEE---
Confidence 788988887 57799999999999999999999999999999999999999998 999999999999999999862
Q ss_pred ceeeeecCCeeeeCCCCCeeeeCCeeEEEEEEeecCCCCCCCCeEEEEEEEecCCCCcccccccCCCchhHHHHHhcccc
Q 003055 110 VSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKAAEALTNAE 189 (852)
Q Consensus 110 ~~~~V~f~G~~~~~~~G~~~w~~~~~v~A~~yd~pi~Gy~~~~~~~LRLW~a~v~~~~fdl~~fn~g~y~~a~~~~~~~e 189 (852)
.+.+|+ | ++|++|+|| +++++|||+++++ .++++.|++++.. |...
T Consensus 79 ------------~~~~g~--~--------~~~~v~i~g----~~~~~rlw~~~~~--~v~lylld~~~~~------n~~~ 124 (601)
T TIGR02094 79 ------------LDTDGK--W--------LKISVRIRG----RDVYAKVWRVQVG--RVPLYLLDTNIPE------NSED 124 (601)
T ss_pred ------------ecCCCC--e--------EEEEEecCC----cEEEEEEEEEEeC--CCCEEEecCCCcc------cchh
Confidence 234565 2 489999999 5899999999974 5789999998733 4445
Q ss_pred ccCccccccCCCCCcccchhhhhhhhhhhhchHHHHHHHHHHhcCcccccccCCCCceEEeCCCChhhhHHHHHHHHHHh
Q 003055 190 KVPICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRILIDL 269 (852)
Q Consensus 190 ~r~It~~LYp~D~~~~GkelRLkQeyfl~saslqdiirrf~~~~gG~~~l~~l~~~~~ihlNDtHpalai~ELmR~Lid~ 269 (852)
+|.||++|||+| +++|++||||||+|++|+|-+ . . -++.+|||||+||||+++||||+|+ +
T Consensus 125 ~R~it~~LY~~D-----~~~R~~Qe~fl~~a~l~~l~~-----l------~--~~pdviH~ND~Htal~~~el~r~l~-~ 185 (601)
T TIGR02094 125 DRWITGRLYGGD-----KEMRIAQEIVLGIGGVRALRA-----L------G--IDPDVYHLNEGHAAFVTLERIRELI-A 185 (601)
T ss_pred hcCccCCCCCCC-----HHHHHHHHHHHHHHHHHHHHH-----c------C--CCceEEEeCCchHHHHHHHHHHHHH-H
Confidence 666999999998 588999999999999998521 1 1 1678999999999999999999999 7
Q ss_pred cCCCHHHHHHHhccceeecccCCCCcccccCCHHHHHHhchhHHHHHHHHhHHHHHHHHHhhCCCCchhhHHHHhhhccc
Q 003055 270 KGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLKETRIL 349 (852)
Q Consensus 270 ~gl~w~eAw~i~~~~~~fTnHT~vpealEkw~~~l~~~lLprh~~II~~In~~f~~~i~~~~~~~~~~~~~~~~~~l~ii 349 (852)
+|++|++||++|+.+++||||||+|+|+|+||.++|.++||| ++++..|+.+++..+ ++.
T Consensus 186 ~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~~~~-~~~~~gl~~~~~~~~-------------------~~~ 245 (601)
T TIGR02094 186 QGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKYFGD-YAANLGLPREQLLAL-------------------GRE 245 (601)
T ss_pred cCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHHhhh-hhhHhCCCHHHHHhh-------------------hhh
Confidence 899999999999999999999999999999999999999998 455556665544322 221
Q ss_pred cccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhcccccccccCCCCCCcccccccCCCCCCccchhh
Q 003055 350 ENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELES 429 (852)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (852)
.
T Consensus 246 ~------------------------------------------------------------------------------- 246 (601)
T TIGR02094 246 N------------------------------------------------------------------------------- 246 (601)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred hhhhhhHHHHHhhhhcCCCCCeeeeeeeeeccCcchhHHHHHHHHHHhHhhhhhhhhhcCCC---ccccccccccccccc
Q 003055 430 EQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEK---FQNKTNGVTPRRWIR 506 (852)
Q Consensus 430 ~~~~~~~~~~~~~e~~~~~~~~v~Ma~Lal~~S~~vNGVS~lHsei~k~~~f~~f~~l~P~k---f~n~TNGVt~rrWl~ 506 (852)
. +..+.|||+++||++|++|||||++|+++++ .||++|++++|.+ |.+||||||+|||.
T Consensus 247 -------------~---~~~~~vnm~~lai~~S~~vngVS~lh~~v~~-~l~~~l~~~~~~~~~~i~gItNGId~~~W~- 308 (601)
T TIGR02094 247 -------------P---DDPEPFNMTVLALRLSRIANGVSKLHGEVSR-KMWQFLYPGYEEEEVPIGYVTNGVHNPTWV- 308 (601)
T ss_pred -------------c---CccCceeHHHHHHHhCCeeeeecHHHHHHHH-HHHHhhhhhcccccCCccceeCCccccccC-
Confidence 0 0125799999999999999999999999998 6899999999987 99999999999998
Q ss_pred ccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----------------
Q 003055 507 FCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYS---------------- 570 (852)
Q Consensus 507 ~~Np~L~~Li~~~ig~~~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~I~~~~g~~---------------- 570 (852)
||.++.|+++++|+ +|.+++++++.|+++ |....++++++|++||.+|+++|++++|+.
T Consensus 309 --~~~~~~l~~~y~~~-~w~~~~~~~~~~~~~--~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl 383 (601)
T TIGR02094 309 --APELRDLYERYLGE-NWRELLADEELWEAI--DDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDR 383 (601)
T ss_pred --CHHHHHHHHHhCCc-chhccchhhhhhhhc--ccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhcc
Confidence 79999999999997 899999999999986 334445666899999999999999999887
Q ss_pred -CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhc
Q 003055 571 -VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVN 649 (852)
Q Consensus 571 -ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn 649 (852)
+||+++||+||||||+||||+| ||++++||.+|++ +|. .|+||||+|||||+|.+||++|++|+++++
T Consensus 384 ~~dpd~~~ig~v~Rl~~yKr~dL-il~~i~~l~~i~~-~~~------~pvq~V~~Gka~p~d~~gk~~i~~i~~la~--- 452 (601)
T TIGR02094 384 FLDPDVLTIGFARRFATYKRADL-IFRDLERLARILN-NPE------RPVQIVFAGKAHPADGEGKEIIQRIVEFSK--- 452 (601)
T ss_pred ccCCCCcEEEEEEcchhhhhHHH-HHHHHHHHHHHhh-CCC------CCeEEEEEEecCcccchHHHHHHHHHHHHh---
Confidence 9999999999999999999999 9999999999985 432 399999999999999999999999999996
Q ss_pred CCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEec
Q 003055 650 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 729 (852)
Q Consensus 650 ~Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~F 729 (852)
+|++.+ ||+|++|||+++|++|++|||||+|||++|+||||||+|||||||+|++||+||||+|..+ ..|+|.|
T Consensus 453 -~~~~~~--kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~~---~~nGf~f 526 (601)
T TIGR02094 453 -RPEFRG--RIVFLENYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGYD---GDNGWAI 526 (601)
T ss_pred -cccCCC--CEEEEcCCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccCC---CCcEEEE
Confidence 899999 9999999999999999999999999999999999999999999999999999999999873 3799999
Q ss_pred ccchhhhhhhhhhcCCCCCCCChhHHHHHHHHhcCCCCcccHHHHHHHhccCCCCCCCcccccccchhHHHHHHHHH-HH
Q 003055 730 GARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKV-DE 808 (852)
Q Consensus 730 G~~~~ev~~l~~~~~~~~~~~~~~~~~v~d~i~~g~f~~~~~~~l~~~L~~~~~~~~~D~y~vlaDF~sY~~aQ~~v-~~ 808 (852)
|...... +. ...+..+..+||+.|+. .| +.
T Consensus 527 ~~~~~~~--------------~~-----------~~~d~~da~~l~~~L~~------------------------ai~~~ 557 (601)
T TIGR02094 527 GDGEEYD--------------DE-----------EEQDRLDAEALYDLLEN------------------------EVIPL 557 (601)
T ss_pred CCCcccc--------------cc-----------ccccCCCHHHHHHHHHH------------------------HHHHH
Confidence 9742211 00 11123478999999984 55 66
Q ss_pred HhcC-----HhHHHHHHHHhhhc-CCCCChhHHHHHHHHHHh
Q 003055 809 AYCD-----QKRWTRMSIMNTAG-SSKFSSDRTIQEYARDIW 844 (852)
Q Consensus 809 ~Y~d-----~~~W~~~~i~niA~-sg~FSSDRtI~eYa~~iw 844 (852)
+|.+ +.+|.+||..+|+. ...||++||+++|++..|
T Consensus 558 yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~yy 599 (601)
T TIGR02094 558 YYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKFY 599 (601)
T ss_pred HhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhC
Confidence 6765 55699999999996 479999999999999876
No 10
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.81 E-value=3.8e-18 Score=187.81 Aligned_cols=267 Identities=21% Similarity=0.287 Sum_probs=188.4
Q ss_pred CeeeeeeeeeccCcchhHHHHHHHHHHhHhh----hhhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCcc
Q 003055 450 QLVRMANLCVVGSHAVNGVAEIHSEIVTNEV----FNEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDW 525 (852)
Q Consensus 450 ~~v~Ma~Lal~~S~~vNGVS~lHsei~k~~~----f~~f~~l~P~kf~n~TNGVt~rrWl~~~Np~L~~Li~~~ig~~~W 525 (852)
..++|...++..|..|+.||.-+.+.+++.. +..+....+.|+.-|+|||....|-....+.+...++
T Consensus 199 ~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~-------- 270 (476)
T cd03791 199 GQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYS-------- 270 (476)
T ss_pred CcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCC--------
Confidence 5688999999999999999999888665321 0111122357899999999999995322222211110
Q ss_pred ccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHH
Q 003055 526 VTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMK 605 (852)
Q Consensus 526 ~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~I~~~~g~~ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik 605 (852)
. . .+ ..|..+|..| +++.|...+++..+.+++-|+.++|+..+ ++..+.+ ++
T Consensus 271 ---------------~-~---~~-~~~~~~k~~l----~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~-li~a~~~---l~ 322 (476)
T cd03791 271 ---------------A-D---DL-EGKAENKAAL----QEELGLPVDPDAPLFGFVGRLTEQKGIDL-LLEALPE---LL 322 (476)
T ss_pred ---------------c-c---cc-ccHHHHHHHH----HHHcCCCcCCCCCEEEEEeeccccccHHH-HHHHHHH---HH
Confidence 0 0 13 4566666654 46778888899999999999999999888 7766654 33
Q ss_pred hcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccC
Q 003055 606 EMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHIS 685 (852)
Q Consensus 606 ~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis 685 (852)
+ .+.++++.|+..+. +.+.+.++++.. .+ +|+|+..|+-.++..+..+||+....|
T Consensus 323 ~----------~~~~lvi~G~g~~~------~~~~~~~~~~~~------~~--~v~~~~~~~~~~~~~~~~~aDv~l~pS 378 (476)
T cd03791 323 E----------LGGQLVILGSGDPE------YEEALRELAARY------PG--RVAVLIGYDEALAHLIYAGADFFLMPS 378 (476)
T ss_pred H----------cCcEEEEEecCCHH------HHHHHHHHHHhC------CC--cEEEEEeCCHHHHHHHHHhCCEEECCC
Confidence 2 13689999987542 223333333211 12 699999999999999999999999877
Q ss_pred CCccccCCCccchhhcccceEeeecccccccccccccc----cceEecccchhhhhhhhhhcCCCCCCCChhHHHHHHHH
Q 003055 686 TAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGE----ENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFV 761 (852)
Q Consensus 686 ~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~----eN~f~FG~~~~ev~~l~~~~~~~~~~~~~~~~~v~d~i 761 (852)
+ .|++|.+.|.+|++|++.|+|--|...|+.....+ .|+|+|...
T Consensus 379 ~--~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~----------------------------- 427 (476)
T cd03791 379 R--FEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGY----------------------------- 427 (476)
T ss_pred C--CCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCC-----------------------------
Confidence 6 69999999999999999999988888886654321 166666431
Q ss_pred hcCCCCcccHHHHHHHhccCCCCCCCcccccccchhHHHHHHHHHHHHhcCHhHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 003055 762 KSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYAR 841 (852)
Q Consensus 762 ~~g~f~~~~~~~l~~~L~~~~~~~~~D~y~vlaDF~sY~~aQ~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~ 841 (852)
+.++|.+.|. ++...|.+++.|.+|+...++. .||-++++++|.+
T Consensus 428 --------~~~~l~~~i~-------------------------~~l~~~~~~~~~~~~~~~~~~~--~fsw~~~a~~~~~ 472 (476)
T cd03791 428 --------NADALLAALR-------------------------RALALYRDPEAWRKLQRNAMAQ--DFSWDRSAKEYLE 472 (476)
T ss_pred --------CHHHHHHHHH-------------------------HHHHHHcCHHHHHHHHHHHhcc--CCChHHHHHHHHH
Confidence 2333444443 4455677899999988877654 6999999999976
Q ss_pred H
Q 003055 842 D 842 (852)
Q Consensus 842 ~ 842 (852)
-
T Consensus 473 ~ 473 (476)
T cd03791 473 L 473 (476)
T ss_pred H
Confidence 4
No 11
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.75 E-value=1.7e-16 Score=176.21 Aligned_cols=265 Identities=18% Similarity=0.279 Sum_probs=182.1
Q ss_pred eeeeeeeeeccCcchhHHHHHHHHHHhHhhhh----hhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccc
Q 003055 451 LVRMANLCVVGSHAVNGVAEIHSEIVTNEVFN----EFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWV 526 (852)
Q Consensus 451 ~v~Ma~Lal~~S~~vNGVS~lHsei~k~~~f~----~f~~l~P~kf~n~TNGVt~rrWl~~~Np~L~~Li~~~ig~~~W~ 526 (852)
.++|...++..|..|+.||.-+.+-+.+..+. .+....+.++.-|.|||...+| ||.-... +.. .
T Consensus 195 ~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~~----~p~~~~~----~~~-~-- 263 (473)
T TIGR02095 195 RVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEVW----NPATDPY----LKA-N-- 263 (473)
T ss_pred chHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCcccc----CCCCCcc----ccc-C--
Confidence 57787888999999999999887755432111 1112246789999999999999 4542111 111 0
Q ss_pred cCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHHh
Q 003055 527 TNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKE 606 (852)
Q Consensus 527 ~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~I~~~~g~~ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~ 606 (852)
+.. +.| +-|..+|.. ++++.|...+++..+.+++-|+.++|...+ ++..+.+ +++
T Consensus 264 -----------~~~-----~~~-~~k~~~k~~----l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~-li~a~~~---l~~ 318 (473)
T TIGR02095 264 -----------YSA-----DDL-AGKAENKEA----LQEELGLPVDDDVPLFGVISRLTQQKGVDL-LLAALPE---LLE 318 (473)
T ss_pred -----------cCc-----cch-hhhhhhHHH----HHHHcCCCccCCCCEEEEEecCccccChHH-HHHHHHH---HHH
Confidence 100 113 244555554 356778877789999999999999999988 7766655 332
Q ss_pred cChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCC
Q 003055 607 MSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHIST 686 (852)
Q Consensus 607 ~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ 686 (852)
.+.++++.|+..|.+ .+.+.++ ++ +.+ + +|+|+..|+.+.+..++.+||+....|+
T Consensus 319 ----------~~~~lvi~G~g~~~~--~~~l~~~----~~---~~~---~--~v~~~~~~~~~~~~~~~~~aDv~l~pS~ 374 (473)
T TIGR02095 319 ----------LGGQLVVLGTGDPEL--EEALREL----AE---RYP---G--NVRVIIGYDEALAHLIYAGADFILMPSR 374 (473)
T ss_pred ----------cCcEEEEECCCCHHH--HHHHHHH----HH---HCC---C--cEEEEEcCCHHHHHHHHHhCCEEEeCCC
Confidence 136899999876533 2233333 22 112 2 6899999999999999999999999877
Q ss_pred CccccCCCccchhhcccceEeeeccccccccccccc----ccceEecccchhhhhhhhhhcCCCCCCCChhHHHHHHHHh
Q 003055 687 AGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVG----EENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVK 762 (852)
Q Consensus 687 ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg----~eN~f~FG~~~~ev~~l~~~~~~~~~~~~~~~~~v~d~i~ 762 (852)
.|.+|.+-|.+|..|++.|+|--|...|+..... ..|+|+|...
T Consensus 375 --~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~------------------------------ 422 (473)
T TIGR02095 375 --FEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEY------------------------------ 422 (473)
T ss_pred --cCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCC------------------------------
Confidence 6999999999999999999998888877665431 2566666431
Q ss_pred cCCCCcccHHHHHHHhccCCCCCCCcccccccchhHHHHHHHHHHHHh-cCHhHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 003055 763 SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAY-CDQKRWTRMSIMNTAGSSKFSSDRTIQEYAR 841 (852)
Q Consensus 763 ~g~f~~~~~~~l~~~L~~~~~~~~~D~y~vlaDF~sY~~aQ~~v~~~Y-~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~ 841 (852)
+.++|.+.|. ++...| .|++.|.+|....+. -.||-+++.++|.+
T Consensus 423 -------d~~~la~~i~-------------------------~~l~~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~~ 468 (473)
T TIGR02095 423 -------DPGALLAALS-------------------------RALRLYRQDPSLWEALQKNAMS--QDFSWDKSAKQYVE 468 (473)
T ss_pred -------CHHHHHHHHH-------------------------HHHHHHhcCHHHHHHHHHHHhc--cCCCcHHHHHHHHH
Confidence 2333444443 333334 488899988877653 58999999999965
No 12
>PRK14098 glycogen synthase; Provisional
Probab=99.63 E-value=4.7e-14 Score=159.63 Aligned_cols=268 Identities=17% Similarity=0.276 Sum_probs=183.1
Q ss_pred CeeeeeeeeeccCcchhHHHHHHHHHHhHh-hh----hhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCc
Q 003055 450 QLVRMANLCVVGSHAVNGVAEIHSEIVTNE-VF----NEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTED 524 (852)
Q Consensus 450 ~~v~Ma~Lal~~S~~vNGVS~lHsei~k~~-~f----~~f~~l~P~kf~n~TNGVt~rrWl~~~Np~L~~Li~~~ig~~~ 524 (852)
+.+|+...+++.|..|+.||.-..+-+++. .+ ...-...+.|+.-|.|||....|- |.-...+.+..+
T Consensus 209 ~~~n~lk~~i~~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~----p~~d~~~~~~~~--- 281 (489)
T PRK14098 209 DEVNMLYTGVEHADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWN----PSTDKLIKKRYS--- 281 (489)
T ss_pred CcccHHHHHHHhcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccC----CcccccccccCC---
Confidence 357888889999999999998777655431 00 111111367899999999999994 532111111111
Q ss_pred cccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHH
Q 003055 525 WVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKM 604 (852)
Q Consensus 525 W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~I~~~~g~~ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~i 604 (852)
.+ .+ +-|+.+|..| ++..|...+++....+++-|+.++|...+ ++..+.+ +
T Consensus 282 ---------------~~-----~~-~~k~~~k~~l----~~~lgl~~~~~~~~i~~vgRl~~~KG~d~-li~a~~~---l 332 (489)
T PRK14098 282 ---------------IE-----RL-DGKLENKKAL----LEEVGLPFDEETPLVGVIINFDDFQGAEL-LAESLEK---L 332 (489)
T ss_pred ---------------cc-----hh-hhHHHHHHHH----HHHhCCCCccCCCEEEEeccccccCcHHH-HHHHHHH---H
Confidence 11 13 4566777555 45679888999999999999999999988 7776654 3
Q ss_pred HhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhcccccccccc
Q 003055 605 KEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHI 684 (852)
Q Consensus 605 k~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~ni 684 (852)
++ .+.++++.|...+. .-+.+.++++.. | + +|.|+..|+-+.+..++.+||+...-
T Consensus 333 ~~----------~~~~lvivG~G~~~------~~~~l~~l~~~~---~---~--~V~~~g~~~~~~~~~~~a~aDi~l~P 388 (489)
T PRK14098 333 VE----------LDIQLVICGSGDKE------YEKRFQDFAEEH---P---E--QVSVQTEFTDAFFHLAIAGLDMLLMP 388 (489)
T ss_pred Hh----------cCcEEEEEeCCCHH------HHHHHHHHHHHC---C---C--CEEEEEecCHHHHHHHHHhCCEEEeC
Confidence 32 14588888864321 222333333311 1 2 69999999999999999999999987
Q ss_pred CCCccccCCCccchhhcccceEeeeccccccccccccc--ccceEecccchhhhhhhhhhcCCCCCCCChhHHHHHHHHh
Q 003055 685 STAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVG--EENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVK 762 (852)
Q Consensus 685 s~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg--~eN~f~FG~~~~ev~~l~~~~~~~~~~~~~~~~~v~d~i~ 762 (852)
|. .|++|.+-|-+|..|++-|+|--|...|+..++. ..|+|+|..
T Consensus 389 S~--~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~------------------------------- 435 (489)
T PRK14098 389 GK--IESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHD------------------------------- 435 (489)
T ss_pred CC--CCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCC-------------------------------
Confidence 76 7999999999999999999998888877665432 246666532
Q ss_pred cCCCCcccHHHHHHHhccCCCCCCCcccccccchhHHHHHHHHHHHHhcCHhHHHHHHHHhhhcCCCCChhHHHHHHHHH
Q 003055 763 SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARD 842 (852)
Q Consensus 763 ~g~f~~~~~~~l~~~L~~~~~~~~~D~y~vlaDF~sY~~aQ~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~~ 842 (852)
.+-+.|.+.|. ++...|.|++.|.++....++ -.||-+++.++|. +
T Consensus 436 ------~d~~~la~ai~-------------------------~~l~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~y~-~ 481 (489)
T PRK14098 436 ------YTPEALVAKLG-------------------------EALALYHDEERWEELVLEAME--RDFSWKNSAEEYA-Q 481 (489)
T ss_pred ------CCHHHHHHHHH-------------------------HHHHHHcCHHHHHHHHHHHhc--CCCChHHHHHHHH-H
Confidence 12333333332 444567888999888765543 5899999999995 4
Q ss_pred Hh
Q 003055 843 IW 844 (852)
Q Consensus 843 iw 844 (852)
+|
T Consensus 482 lY 483 (489)
T PRK14098 482 LY 483 (489)
T ss_pred HH
Confidence 44
No 13
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.60 E-value=2e-14 Score=160.35 Aligned_cols=264 Identities=19% Similarity=0.273 Sum_probs=175.9
Q ss_pred eeeeeeeeeccCcchhHHHHHHHHHHhHhhhh----hhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccc
Q 003055 451 LVRMANLCVVGSHAVNGVAEIHSEIVTNEVFN----EFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWV 526 (852)
Q Consensus 451 ~v~Ma~Lal~~S~~vNGVS~lHsei~k~~~f~----~f~~l~P~kf~n~TNGVt~rrWl~~~Np~L~~Li~~~ig~~~W~ 526 (852)
.+++...+++.|..|+.||.-+.+-+++..|. .+....+.|+.-|.|||....|- |.-...+.....
T Consensus 187 ~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~----p~~~~~~~~~~~----- 257 (466)
T PRK00654 187 QISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYDIWN----PETDPLLAANYS----- 257 (466)
T ss_pred cccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCCccccC----CccCcccccccC-----
Confidence 46777778899999999999887755542221 12233467899999999999994 532111111111
Q ss_pred cCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHHh
Q 003055 527 TNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKE 606 (852)
Q Consensus 527 ~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~I~~~~g~~ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~ 606 (852)
. ..| +-|..+|..| +++.|.. +++..+.+++-|+.++|...+ ++..+.+ +++
T Consensus 258 ---------------~---~~~-~~k~~~k~~l----~~~~gl~-~~~~~~i~~vGRl~~~KG~~~-li~a~~~---l~~ 309 (466)
T PRK00654 258 ---------------A---DDL-EGKAENKRAL----QERFGLP-DDDAPLFAMVSRLTEQKGLDL-VLEALPE---LLE 309 (466)
T ss_pred ---------------h---hhh-hchHHHHHHH----HHHhCCC-CCCCcEEEEeeccccccChHH-HHHHHHH---HHh
Confidence 0 113 3455556554 4566765 457788999999999999998 7766554 332
Q ss_pred cChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCC
Q 003055 607 MSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHIST 686 (852)
Q Consensus 607 ~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ 686 (852)
. +.++++.|...|.+ -..+.++ ++.. ++ +|+|+..|+-+++..++.+||+...-|+
T Consensus 310 -~---------~~~lvivG~g~~~~--~~~l~~l----~~~~------~~--~v~~~~g~~~~~~~~~~~~aDv~v~PS~ 365 (466)
T PRK00654 310 -Q---------GGQLVLLGTGDPEL--EEAFRAL----AARY------PG--KVGVQIGYDEALAHRIYAGADMFLMPSR 365 (466)
T ss_pred -c---------CCEEEEEecCcHHH--HHHHHHH----HHHC------CC--cEEEEEeCCHHHHHHHHhhCCEEEeCCC
Confidence 0 35788888754422 1233333 3211 12 5777788988889999999999999888
Q ss_pred CccccCCCccchhhcccceEeeecccccccccccc----cccceEecccchhhhhhhhhhcCCCCCCCChhHHHHHHHHh
Q 003055 687 AGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEV----GEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVK 762 (852)
Q Consensus 687 ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~v----g~eN~f~FG~~~~ev~~l~~~~~~~~~~~~~~~~~v~d~i~ 762 (852)
.|.+|.+-|-+|..|++.|.|--|.-.|+.... +..|+|+|..
T Consensus 366 --~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~------------------------------- 412 (466)
T PRK00654 366 --FEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDD------------------------------- 412 (466)
T ss_pred --CCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCC-------------------------------
Confidence 799999999999999999999777766654332 1245666532
Q ss_pred cCCCCcccHHHHHHHhccCCCCCCCcccccccchhHHHHHHHHHHHHhcCHhHHHHHHHHhhhcCCCCChhHHHHHHHH
Q 003055 763 SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYAR 841 (852)
Q Consensus 763 ~g~f~~~~~~~l~~~L~~~~~~~~~D~y~vlaDF~sY~~aQ~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~ 841 (852)
.+.+.|.+.|. ++...|.+++.|.+|+...++ -.||.+++.++|.+
T Consensus 413 ------~d~~~la~~i~-------------------------~~l~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~~ 458 (466)
T PRK00654 413 ------FNAEDLLRALR-------------------------RALELYRQPPLWRALQRQAMA--QDFSWDKSAEEYLE 458 (466)
T ss_pred ------CCHHHHHHHHH-------------------------HHHHHhcCHHHHHHHHHHHhc--cCCChHHHHHHHHH
Confidence 12334444443 344456677888888766553 58999999999965
No 14
>PLN02939 transferase, transferring glycosyl groups
Probab=99.41 E-value=5.9e-11 Score=142.91 Aligned_cols=268 Identities=18% Similarity=0.238 Sum_probs=180.3
Q ss_pred CeeeeeeeeeccCcchhHHHHHHHHHHhHhhh---hhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccc
Q 003055 450 QLVRMANLCVVGSHAVNGVAEIHSEIVTNEVF---NEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWV 526 (852)
Q Consensus 450 ~~v~Ma~Lal~~S~~vNGVS~lHsei~k~~~f---~~f~~l~P~kf~n~TNGVt~rrWl~~~Np~L~~Li~~~ig~~~W~ 526 (852)
+.+|+-..+++.|..|+-||.-+.+-+++.-. .......+.|+.-|-|||...+| ||.-...|.....
T Consensus 682 ~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~w----nPatD~~L~~~Ys----- 752 (977)
T PLN02939 682 GRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTW----NPSTDRFLKVQYN----- 752 (977)
T ss_pred CchHHHHHHHHhCCeeEeeeHHHHHHHHHHhccchHHHhccccCCceEEecceehhhc----CCccccccccccC-----
Confidence 46888888899999999999888875543211 11223457889999999999999 5653222211111
Q ss_pred cCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCC-CCcccccccccccccccccchhhhHHHHHHHHH
Q 003055 527 TNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVS-PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMK 605 (852)
Q Consensus 527 ~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~I~~~~g~~ld-pdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik 605 (852)
++| | +-|..+|..| +++.|..-+ ++..+.++|-|+++.|...+ ++..+.+. .
T Consensus 753 ------------~~d------l-~GK~~nK~aL----RkelGL~~~d~d~pLIg~VGRL~~QKGiDl-LleA~~~L---l 805 (977)
T PLN02939 753 ------------AND------L-QGKAANKAAL----RKQLGLSSADASQPLVGCITRLVPQKGVHL-IRHAIYKT---A 805 (977)
T ss_pred ------------hhh------h-hhhhhhhHHH----HHHhCCCcccccceEEEEeecCCcccChHH-HHHHHHHH---h
Confidence 111 4 3566666554 567787653 67888999999999999988 77666543 2
Q ss_pred hcChhhhhcccCCeEEEEeccC-CCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhcccccccccc
Q 003055 606 EMSAVERKAKFVPRVCIFGGKA-FATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHI 684 (852)
Q Consensus 606 ~~~~~~r~~~~~P~~~IFaGKA-~P~y~~aK~iIk~I~~va~~vn~Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~ni 684 (852)
+ ...++|+.|.. .|.+ -..+-+++.... ..+ +|.|+-.|+=.++..++.|||+-..-
T Consensus 806 ~----------~dvqLVIvGdGp~~~~--e~eL~~La~~l~--------l~d--rV~FlG~~de~lah~IYAaADIFLmP 863 (977)
T PLN02939 806 E----------LGGQFVLLGSSPVPHI--QREFEGIADQFQ--------SNN--NIRLILKYDEALSHSIYAASDMFIIP 863 (977)
T ss_pred h----------cCCEEEEEeCCCcHHH--HHHHHHHHHHcC--------CCC--eEEEEeccCHHHHHHHHHhCCEEEEC
Confidence 2 03478888865 2321 222223332221 123 79999999988899999999999998
Q ss_pred CCCccccCCCccchhhcccceEeeeccccccccccccc-------ccceEecccchhhhhhhhhhcCCCCCCCChhHHHH
Q 003055 685 STAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVG-------EENFFLFGARAHEIAGLRKERSEGKFVPDARFEEV 757 (852)
Q Consensus 685 s~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg-------~eN~f~FG~~~~ev~~l~~~~~~~~~~~~~~~~~v 757 (852)
|+ .|.+|-+-|-+|.-|++-|.|--|--.|+...+. ..|+|+|...
T Consensus 864 Sr--~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~------------------------- 916 (977)
T PLN02939 864 SM--FEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTP------------------------- 916 (977)
T ss_pred CC--ccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCC-------------------------
Confidence 87 6999999999999999999987777776554431 2567776431
Q ss_pred HHHHhcCCCCcccHHHHHHHhccCCCCCCCcccccccchhHHHHHHHHHHH-HhcCHhHHHHHHHHhhhcCCCCChhHHH
Q 003055 758 KKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDE-AYCDQKRWTRMSIMNTAGSSKFSSDRTI 836 (852)
Q Consensus 758 ~d~i~~g~f~~~~~~~l~~~L~~~~~~~~~D~y~vlaDF~sY~~aQ~~v~~-~Y~d~~~W~~~~i~niA~sg~FSSDRtI 836 (852)
+-..|.+.|. ++.. +..|++.|.+|....++ -.||-++++
T Consensus 917 ------------D~eaLa~AL~-------------------------rAL~~~~~dpe~~~~L~~~am~--~dFSWe~~A 957 (977)
T PLN02939 917 ------------DEQGLNSALE-------------------------RAFNYYKRKPEVWKQLVQKDMN--IDFSWDSSA 957 (977)
T ss_pred ------------CHHHHHHHHH-------------------------HHHHHhccCHHHHHHHHHHHHH--hcCCHHHHH
Confidence 2233333333 2222 33578889888765443 579999999
Q ss_pred HHHHH
Q 003055 837 QEYAR 841 (852)
Q Consensus 837 ~eYa~ 841 (852)
++|.+
T Consensus 958 ~qYee 962 (977)
T PLN02939 958 SQYEE 962 (977)
T ss_pred HHHHH
Confidence 99964
No 15
>PRK14099 glycogen synthase; Provisional
Probab=99.32 E-value=4.5e-11 Score=135.51 Aligned_cols=265 Identities=16% Similarity=0.215 Sum_probs=174.0
Q ss_pred eeeeeeeeeccCcchhHHHHHHHHHHhHhhh----hhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccc
Q 003055 451 LVRMANLCVVGSHAVNGVAEIHSEIVTNEVF----NEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWV 526 (852)
Q Consensus 451 ~v~Ma~Lal~~S~~vNGVS~lHsei~k~~~f----~~f~~l~P~kf~n~TNGVt~rrWl~~~Np~L~~Li~~~ig~~~W~ 526 (852)
.++|...++..|..|+.||.-+.+-+++..+ .......+.|+.-|.|||....| ||.-...+....
T Consensus 199 ~~~~~k~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f----~p~~~~~~~~~~------ 268 (485)
T PRK14099 199 GIGYLKAGLQLADRITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAVW----NPATDELIAATY------ 268 (485)
T ss_pred CccHHHHHHHhcCeeeecChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhhc----cccccchhhhcC------
Confidence 4566667888899999998887775543210 11122346789999999999999 454222211111
Q ss_pred cCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHHh
Q 003055 527 TNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKE 606 (852)
Q Consensus 527 ~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~I~~~~g~~ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~ 606 (852)
+.+ .+ +.|..+|..| +++.|...+++.++.++|-|+.++|...+ ++..+.+ +.+
T Consensus 269 --------------~~~---~~-~~k~~~k~~l----~~~~gl~~~~~~~li~~VgRL~~~KG~d~-Li~A~~~---l~~ 322 (485)
T PRK14099 269 --------------DVE---TL-AARAANKAAL----QARFGLDPDPDALLLGVISRLSWQKGLDL-LLEALPT---LLG 322 (485)
T ss_pred --------------Chh---HH-HhHHHhHHHH----HHHcCCCcccCCcEEEEEecCCccccHHH-HHHHHHH---HHh
Confidence 111 13 4566666554 56788888889999999999999999988 7766554 322
Q ss_pred cChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCC
Q 003055 607 MSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHIST 686 (852)
Q Consensus 607 ~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ 686 (852)
. ..++|+.|...+. +-+.+.++++ ..+ + +++++-.|+-.+++.+..+||+...-|+
T Consensus 323 -~---------~~~lvivG~G~~~------~~~~l~~l~~---~~~---~--~v~~~~G~~~~l~~~~~a~aDifv~PS~ 378 (485)
T PRK14099 323 -E---------GAQLALLGSGDAE------LEARFRAAAQ---AYP---G--QIGVVIGYDEALAHLIQAGADALLVPSR 378 (485)
T ss_pred -c---------CcEEEEEecCCHH------HHHHHHHHHH---HCC---C--CEEEEeCCCHHHHHHHHhcCCEEEECCc
Confidence 0 3467777764221 1122222322 112 2 5655566898999999899999999776
Q ss_pred CccccCCCccchhhcccceEeeecccccccccccc-------cccceEecccchhhhhhhhhhcCCCCCCCChhHHHHHH
Q 003055 687 AGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEV-------GEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKK 759 (852)
Q Consensus 687 ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~v-------g~eN~f~FG~~~~ev~~l~~~~~~~~~~~~~~~~~v~d 759 (852)
.|.+|.+-|-+|.-|++-|.|--|.-.|+.... |..|+|+|..
T Consensus 379 --~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~---------------------------- 428 (485)
T PRK14099 379 --FEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSP---------------------------- 428 (485)
T ss_pred --cCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCC----------------------------
Confidence 799999999999999766666666666644332 2246666642
Q ss_pred HHhcCCCCcccHHHHHHHhccCCCCCCCcccccccchhHHHHHHHHHHHHhcCHhHHHHHHHHhhhcCCCCChhHHHHHH
Q 003055 760 FVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEY 839 (852)
Q Consensus 760 ~i~~g~f~~~~~~~l~~~L~~~~~~~~~D~y~vlaDF~sY~~aQ~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eY 839 (852)
.|-+.|.+.|. ++...|.|++.|.+|....+ .-.||-+++.++|
T Consensus 429 ---------~d~~~La~ai~-------------------------~a~~l~~d~~~~~~l~~~~~--~~~fSw~~~a~~y 472 (485)
T PRK14099 429 ---------VTADALAAALR-------------------------KTAALFADPVAWRRLQRNGM--TTDVSWRNPAQHY 472 (485)
T ss_pred ---------CCHHHHHHHHH-------------------------HHHHHhcCHHHHHHHHHHhh--hhcCChHHHHHHH
Confidence 12334444443 44456788889988887665 3689999999999
Q ss_pred HH
Q 003055 840 AR 841 (852)
Q Consensus 840 a~ 841 (852)
.+
T Consensus 473 ~~ 474 (485)
T PRK14099 473 AA 474 (485)
T ss_pred HH
Confidence 54
No 16
>PLN02316 synthase/transferase
Probab=98.69 E-value=7.5e-07 Score=109.44 Aligned_cols=176 Identities=17% Similarity=0.268 Sum_probs=120.4
Q ss_pred CCCcccccccccccccccccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 003055 489 PEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTG 568 (852)
Q Consensus 489 P~kf~n~TNGVt~rrWl~~~Np~L~~Li~~~ig~~~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~I~~~~g 568 (852)
+.|+.-|.|||.+.+| ||.-...+ .. .+. ++| +.+-|..+|..| +++.|
T Consensus 786 ~~Kl~vI~NGID~~~w----~P~tD~~l----p~-~y~------------~~~------~~~gK~~~k~~L----r~~lG 834 (1036)
T PLN02316 786 LYKFHGILNGIDPDIW----DPYNDNFI----PV-PYT------------SEN------VVEGKRAAKEAL----QQRLG 834 (1036)
T ss_pred cCCEEEEECCcccccc----CCcccccc----cc-cCC------------chh------hhhhhhhhHHHH----HHHhC
Confidence 4789999999999999 45421111 10 000 011 112344555543 55667
Q ss_pred CcCCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 003055 569 YSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATV 648 (852)
Q Consensus 569 ~~ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~v 648 (852)
.. +++....++|-|+++.|-..+ ++..+.++.+ . +.++|+.|-. |....-..+.++..+++.
T Consensus 835 L~-~~d~plVg~VGRL~~qKGvdl-Li~Al~~ll~--~-----------~~qlVIvG~G-pd~~~e~~l~~La~~Lg~-- 896 (1036)
T PLN02316 835 LK-QADLPLVGIITRLTHQKGIHL-IKHAIWRTLE--R-----------NGQVVLLGSA-PDPRIQNDFVNLANQLHS-- 896 (1036)
T ss_pred CC-cccCeEEEEEeccccccCHHH-HHHHHHHHhh--c-----------CcEEEEEeCC-CCHHHHHHHHHHHHHhCc--
Confidence 66 357788999999999999988 7776655421 1 3577888854 433333445555544431
Q ss_pred cCCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccc
Q 003055 649 NHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEV 721 (852)
Q Consensus 649 n~Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~v 721 (852)
...+ +|.|.-.|+-.++..+..|||+-.--|+ .|.||-+-|-+|--|++-|.+--|-..|+...+
T Consensus 897 ----~~~~--rV~f~g~~de~lah~iyaaADiflmPS~--~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~ 961 (1036)
T PLN02316 897 ----SHHD--RARLCLTYDEPLSHLIYAGADFILVPSI--FEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDV 961 (1036)
T ss_pred ----cCCC--eEEEEecCCHHHHHHHHHhCcEEEeCCc--ccCccHHHHHHHHcCCCeEEEcCCCcHhhcccc
Confidence 1223 7888888999999999999999998776 899999999999999999989888887766543
No 17
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=97.81 E-value=0.00021 Score=82.53 Aligned_cols=271 Identities=18% Similarity=0.254 Sum_probs=180.7
Q ss_pred CeeeeeeeeeccCcchhHHHHHHHHHHhHhhhh----hhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCcc
Q 003055 450 QLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFN----EFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDW 525 (852)
Q Consensus 450 ~~v~Ma~Lal~~S~~vNGVS~lHsei~k~~~f~----~f~~l~P~kf~n~TNGVt~rrWl~~~Np~L~~Li~~~ig~~~W 525 (852)
+.+++...++..|.+|+-||.-+.+=+...-|- ++-.....+++.|-||+.---| ||+-...+..
T Consensus 197 ~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~w----np~~d~~~~~------- 265 (487)
T COG0297 197 GQISFLKGGLYYADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRSGKLSGILNGIDYDLW----NPETDPYIAA------- 265 (487)
T ss_pred CcchhhhhhheeccEEEEECHHHHHhhccccccccchhhhhhccccEEEEEeeEEeccc----Ccccccchhc-------
Confidence 458888899999999999998887733311111 2223335678899999999999 5643222211
Q ss_pred ccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHH
Q 003055 526 VTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMK 605 (852)
Q Consensus 526 ~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~I~~~~g~~ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik 605 (852)
.+ +.+ .|. .|..||..|- ++.|...+.+....+++-|+.++|=-+| ++..++.+ +.
T Consensus 266 -----------~y--~~~---~~~-~k~~nk~~L~----~~~gL~~~~~~pl~~~vsRl~~QKG~dl-~~~~i~~~--l~ 321 (487)
T COG0297 266 -----------NY--SAE---VLP-AKAENKVALQ----ERLGLDVDLPGPLFGFVSRLTAQKGLDL-LLEAIDEL--LE 321 (487)
T ss_pred -----------cC--Ccc---chh-hhHHHHHHHH----HHhCCCCCCCCcEEEEeeccccccchhH-HHHHHHHH--HH
Confidence 11 111 142 3777777665 4669999999999999999999999998 88877765 22
Q ss_pred hcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccC
Q 003055 606 EMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHIS 685 (852)
Q Consensus 606 ~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis 685 (852)
. ..|+|+=|++-|.+..+ +..+++.+. + ++.+.--|+..+|++|..|||+|.-=|
T Consensus 322 ~-----------~~~~vilG~gd~~le~~------~~~la~~~~------~--~~~~~i~~~~~la~~i~agaD~~lmPS 376 (487)
T COG0297 322 Q-----------GWQLVLLGTGDPELEEA------LRALASRHP------G--RVLVVIGYDEPLAHLIYAGADVILMPS 376 (487)
T ss_pred h-----------CceEEEEecCcHHHHHH------HHHHHHhcC------c--eEEEEeeecHHHHHHHHhcCCEEEeCC
Confidence 1 25899999996666544 334444322 2 799999999999999999999999666
Q ss_pred CCccccCCCccchhhcccceEeeecccccccccccccccceEecccchhhhhhhhhhcCCCCCCCChhHHHHHHHHhcCC
Q 003055 686 TAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGV 765 (852)
Q Consensus 686 ~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG~~~~ev~~l~~~~~~~~~~~~~~~~~v~d~i~~g~ 765 (852)
+ .|.||-+-|=+|.=|+|=|-. ++|.- ++.|.+ .+++. ..-...|.
T Consensus 377 r--fEPcGL~ql~amryGtvpIv~----------~tGGL--------adTV~~-----------~~~~~---~~~~gtGf 422 (487)
T COG0297 377 R--FEPCGLTQLYAMRYGTLPIVR----------ETGGL--------ADTVVD-----------RNEWL---IQGVGTGF 422 (487)
T ss_pred c--CcCCcHHHHHHHHcCCcceEc----------ccCCc--------cceecC-----------ccchh---ccCceeEE
Confidence 5 799999999999999954433 33221 122211 01111 00011121
Q ss_pred -CCcccHHHHHHHhccCCCCCCCcccccccchhHHHHHHHHHHHHhcCHhH-HHHHHHHhhhcCCCCChhHHHHHHHH
Q 003055 766 -FGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKR-WTRMSIMNTAGSSKFSSDRTIQEYAR 841 (852)
Q Consensus 766 -f~~~~~~~l~~~L~~~~~~~~~D~y~vlaDF~sY~~aQ~~v~~~Y~d~~~-W~~~~i~niA~sg~FSSDRtI~eYa~ 841 (852)
|.+.+.+.+-..|. +....|+++.. |.++....+. ..||.|+|..+|.+
T Consensus 423 ~f~~~~~~~l~~al~-------------------------rA~~~y~~~~~~w~~~~~~~m~--~d~sw~~sa~~y~~ 473 (487)
T COG0297 423 LFLQTNPDHLANALR-------------------------RALVLYRAPPLLWRKVQPNAMG--ADFSWDLSAKEYVE 473 (487)
T ss_pred EEecCCHHHHHHHHH-------------------------HHHHHhhCCHHHHHHHHHhhcc--cccCchhHHHHHHH
Confidence 22224445554443 56667888777 9887766555 99999999999975
No 18
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=97.15 E-value=0.0037 Score=63.79 Aligned_cols=132 Identities=14% Similarity=0.109 Sum_probs=91.5
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003055 571 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 650 (852)
Q Consensus 571 ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 650 (852)
.+++....+++-|+.+.|+..+ ++..+.++.+- ..+.++++.|+..+.+....+.+ +...
T Consensus 199 ~~~~~~~i~~~G~~~~~K~~~~-li~a~~~l~~~-----------~~~~~l~i~G~~~~~~~~~~~~~--~~~~------ 258 (375)
T cd03821 199 ILPDKRIILFLGRLHPKKGLDL-LIEAFAKLAER-----------FPDWHLVIAGPDEGGYRAELKQI--AAAL------ 258 (375)
T ss_pred CCCCCcEEEEEeCcchhcCHHH-HHHHHHHhhhh-----------cCCeEEEEECCCCcchHHHHHHH--HHhc------
Confidence 3456778889999999999877 76665554322 12568999998776655433322 1211
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 003055 651 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 730 (852)
Q Consensus 651 Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG 730 (852)
...+ +|.|+....-+-...++..||+....|.. |..|++-+-+|..|++.|+|-.|...|+... .++++..
T Consensus 259 --~~~~--~v~~~g~~~~~~~~~~~~~adv~v~ps~~--e~~~~~~~Eama~G~PvI~~~~~~~~~~~~~---~~~~~~~ 329 (375)
T cd03821 259 --GLED--RVTFTGMLYGEDKAAALADADLFVLPSHS--ENFGIVVAEALACGTPVVTTDKVPWQELIEY---GCGWVVD 329 (375)
T ss_pred --Cccc--eEEEcCCCChHHHHHHHhhCCEEEecccc--CCCCcHHHHHHhcCCCEEEcCCCCHHHHhhc---CceEEeC
Confidence 1223 68888765544555677889999987776 9999999999999999999988877776543 4555544
Q ss_pred c
Q 003055 731 A 731 (852)
Q Consensus 731 ~ 731 (852)
.
T Consensus 330 ~ 330 (375)
T cd03821 330 D 330 (375)
T ss_pred C
Confidence 3
No 19
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=97.11 E-value=0.0051 Score=65.85 Aligned_cols=133 Identities=17% Similarity=0.142 Sum_probs=90.9
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003055 571 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 650 (852)
Q Consensus 571 ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 650 (852)
++++....+++-|+..+|...+ ++..+.++ .. +.++++.|...........+.+++..+..
T Consensus 197 ~~~~~~~i~~~Grl~~~Kg~~~-li~a~~~l---~~-----------~~~l~i~g~g~~~~~~~~~~~~~~~~~~~---- 257 (388)
T TIGR02149 197 IDRSRPYILFVGRITRQKGVPH-LLDAVHYI---PK-----------DVQVVLCAGAPDTPEVAEEVRQAVALLDR---- 257 (388)
T ss_pred CCCCceEEEEEcccccccCHHH-HHHHHHHH---hh-----------cCcEEEEeCCCCcHHHHHHHHHHHHHhcc----
Confidence 4567778889999999999887 66655443 21 23455555443333334445555544331
Q ss_pred CcCCCCcceEEEecC-CChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEec
Q 003055 651 DPEIGDLLKVIFVPD-YNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 729 (852)
Q Consensus 651 Dp~v~~~lKVvFlen-Y~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~F 729 (852)
. .+ +|+|+.. +.-+-...++.+||+-...|. .|..|.+-+-+|.-|++.|+|-.|...|+.+. ..|++++
T Consensus 258 ~---~~--~v~~~~~~~~~~~~~~~~~~aDv~v~ps~--~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i~~--~~~G~~~ 328 (388)
T TIGR02149 258 N---RT--GIIWINKMLPKEELVELLSNAEVFVCPSI--YEPLGIVNLEAMACGTPVVASATGGIPEVVVD--GETGFLV 328 (388)
T ss_pred c---cC--ceEEecCCCCHHHHHHHHHhCCEEEeCCc--cCCCChHHHHHHHcCCCEEEeCCCCHHHHhhC--CCceEEc
Confidence 1 11 4787754 566667788899999988775 58999999999999999999988888876653 2577777
Q ss_pred cc
Q 003055 730 GA 731 (852)
Q Consensus 730 G~ 731 (852)
-.
T Consensus 329 ~~ 330 (388)
T TIGR02149 329 PP 330 (388)
T ss_pred CC
Confidence 43
No 20
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=97.07 E-value=0.015 Score=68.88 Aligned_cols=203 Identities=19% Similarity=0.240 Sum_probs=132.9
Q ss_pred eeeccCcchhHHHHHHHHHHhHhhhhhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccccCcchHHHhh
Q 003055 457 LCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELR 536 (852)
Q Consensus 457 Lal~~S~~vNGVS~lHsei~k~~~f~~f~~l~P~kf~n~TNGVt~rrWl~~~Np~L~~Li~~~ig~~~W~~d~~~l~~l~ 536 (852)
.+...|+.+--||.+-..=+ ..++..-|++ =+-|||.+..|-.
T Consensus 222 ~aa~~Ad~fttVS~it~~E~-----~~Ll~~~pd~--ViPNGid~~~f~~------------------------------ 264 (590)
T cd03793 222 AAAHCAHVFTTVSEITAYEA-----EHLLKRKPDV--VLPNGLNVKKFSA------------------------------ 264 (590)
T ss_pred HHHhhCCEEEECChHHHHHH-----HHHhCCCCCE--EeCCCcchhhccc------------------------------
Confidence 46677777788855444433 3466667777 4459999988842
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cC-CcCCCCcccccc-cccccc-cccccchhhhHHHHHHHHHhcChhhh
Q 003055 537 KFADNEDLQSQFRAAKRNNKMKVVSFIKEK-TG-YSVSPDAMFDIQ-VKRIHE-YKRQLMNILGIVYRYKKMKEMSAVER 612 (852)
Q Consensus 537 ~~~~D~~f~~~~~~vK~~nK~~L~~~I~~~-~g-~~ldpdslfdvq-~kR~he-YKRq~Lnil~ii~ry~~ik~~~~~~r 612 (852)
.. ++...|...|.++.++++.+ .| ..++|+..+..| +=|+.- -|=-.+ ++.-+.|+++....+..+.
T Consensus 265 ----~~----e~~~~~~~~k~ki~~f~~~~~~~~~~~~~d~tli~f~~GR~e~~nKGiDv-lIeAl~rLn~~l~~~~~~~ 335 (590)
T cd03793 265 ----LH----EFQNLHAQSKEKINEFVRGHFYGHYDFDLDKTLYFFTAGRYEFSNKGADM-FLEALARLNYLLKVEGSDT 335 (590)
T ss_pred ----ch----hhhhhhHHhhhhhhHHHHHHHhhhcCCCCCCeEEEEEeeccccccCCHHH-HHHHHHHHHHHHHhcCCCC
Confidence 11 15578899999999997543 23 468888777777 799965 577777 8888888887654222211
Q ss_pred hcccCCeEEEEeccCC-------CCcHHHHHHHHHHHHHhhhhcCC----------------------------------
Q 003055 613 KAKFVPRVCIFGGKAF-------ATYVQAKRIVKFITDVGATVNHD---------------------------------- 651 (852)
Q Consensus 613 ~~~~~P~~~IFaGKA~-------P~y~~aK~iIk~I~~va~~vn~D---------------------------------- 651 (852)
-+=-.+||-+|.. -+...-|.+-.-++++...|...
T Consensus 336 ---tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~ 412 (590)
T cd03793 336 ---TVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGKRLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQR 412 (590)
T ss_pred ---eEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhhhhhhHhhccCCCChhhhcchhhHHHHHHHHHhhcc
Confidence 1112345777644 12233333333333332222111
Q ss_pred ----c-------------------------CCCCcceEEEecCC--------ChhhhhhhccccccccccCCCccccCCC
Q 003055 652 ----P-------------------------EIGDLLKVIFVPDY--------NVSVAELLIPASELSQHISTAGMEASGT 694 (852)
Q Consensus 652 ----p-------------------------~v~~~lKVvFlenY--------~vslAe~lipa~Dvs~nis~ag~EASGT 694 (852)
| .-.++.||||.|.| +++. +.++.|||+..--|.. |.-|-
T Consensus 413 ~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L~~~~~~~g~~y-~E~~~g~dl~v~PS~y--E~fG~ 489 (590)
T cd03793 413 HSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFLSSTNPLLGLDY-EEFVRGCHLGVFPSYY--EPWGY 489 (590)
T ss_pred CCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEcccccCCCCCcCCcch-HHHhhhceEEEecccc--CCCCc
Confidence 1 12568999999998 5543 4558999999988877 99999
Q ss_pred ccchhhcccceEeeecc
Q 003055 695 SNMKFAMNGCILIGTLD 711 (852)
Q Consensus 695 snMKfamNG~l~lgtlD 711 (852)
.-+-+|.-|++.|+|--
T Consensus 490 ~~lEAma~G~PvI~t~~ 506 (590)
T cd03793 490 TPAECTVMGIPSITTNL 506 (590)
T ss_pred HHHHHHHcCCCEEEccC
Confidence 99999999999999954
No 21
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=97.06 E-value=0.0069 Score=73.83 Aligned_cols=146 Identities=16% Similarity=0.165 Sum_probs=98.8
Q ss_pred HHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCC---CcHHHHHHHHHH
Q 003055 565 EKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFA---TYVQAKRIVKFI 641 (852)
Q Consensus 565 ~~~g~~ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P---~y~~aK~iIk~I 641 (852)
+..|...+|+.-+++++=|+.+.|.... ++..+.+..+++. ...-+|.||...+ .+...+..++.+
T Consensus 540 ~~~G~l~d~~kpiIl~VGRL~~~KGid~-LIeA~~~l~~l~~----------~~~LVIVGGg~~~~~s~d~ee~~~i~~L 608 (784)
T TIGR02470 540 EHYGYLKDPNKPIIFSMARLDRVKNLTG-LVECYGRSPKLRE----------LVNLVVVAGKLDAKESKDREEQAEIEKM 608 (784)
T ss_pred HHhCCCCCCCCcEEEEEeCCCccCCHHH-HHHHHHHhHhhCC----------CeEEEEEeCCcccccccchhHHHHHHHH
Confidence 4568777899999999999999999776 5554443332321 1344666776442 244444555555
Q ss_pred HHHhhhhcCCcCCCCcceEEEecCC--Chhh---hhhhccccccccccCCCccccCCCccchhhcccceEeeeccccccc
Q 003055 642 TDVGATVNHDPEIGDLLKVIFVPDY--NVSV---AELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVE 716 (852)
Q Consensus 642 ~~va~~vn~Dp~v~~~lKVvFlenY--~vsl---Ae~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvE 716 (852)
.++++.. .+.+ +|.|+--. ...+ .+.+-.++||-.+.|. .|+.|-.-+-||.-|.+.|+|-.|-..|
T Consensus 609 ~~la~~~----gL~g--~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~--~EpFGLvvLEAMAcGlPVVAT~~GG~~E 680 (784)
T TIGR02470 609 HNLIDQY----QLHG--QIRWIGAQLNRVRNGELYRYIADTKGIFVQPAL--YEAFGLTVLEAMTCGLPTFATRFGGPLE 680 (784)
T ss_pred HHHHHHh----CCCC--eEEEccCcCCcccHHHHHHHhhccCcEEEECCc--ccCCCHHHHHHHHcCCCEEEcCCCCHHH
Confidence 5555422 3455 78876421 1233 3333446789988775 7999999999999999999999999998
Q ss_pred ccccccccceEeccc
Q 003055 717 IRQEVGEENFFLFGA 731 (852)
Q Consensus 717 i~e~vg~eN~f~FG~ 731 (852)
|.+.. .|+|++-.
T Consensus 681 iV~dg--~tGfLVdp 693 (784)
T TIGR02470 681 IIQDG--VSGFHIDP 693 (784)
T ss_pred HhcCC--CcEEEeCC
Confidence 77653 78888853
No 22
>PLN00142 sucrose synthase
Probab=97.06 E-value=0.0056 Score=74.74 Aligned_cols=145 Identities=13% Similarity=0.116 Sum_probs=95.9
Q ss_pred HcCCcCCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCC---cHHHHHHHHHHH
Q 003055 566 KTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFAT---YVQAKRIVKFIT 642 (852)
Q Consensus 566 ~~g~~ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~---y~~aK~iIk~I~ 642 (852)
..|..-+++..+++++=|+..+|.... ++..+.+..++.. . .+-+|.||...|. +......++.+.
T Consensus 564 ~lg~l~~~~kpvIl~VGRL~~~KGid~-LIeA~a~l~~l~~---~-------~~LVIVGgg~d~~~s~d~ee~~el~~L~ 632 (815)
T PLN00142 564 HIGYLKDRKKPIIFSMARLDRVKNLTG-LVEWYGKNKRLRE---L-------VNLVVVGGFIDPSKSKDREEIAEIKKMH 632 (815)
T ss_pred HhCCccCCCCcEEEEEecCcccCCHHH-HHHHHHHHHHhCC---C-------cEEEEEECCccccccccHHHHHHHHHHH
Confidence 456656788878999999999999987 6665544433211 0 2234455542332 233333344444
Q ss_pred HHhhhhcCCcCCCCcceEEEecC---C--ChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccc
Q 003055 643 DVGATVNHDPEIGDLLKVIFVPD---Y--NVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEI 717 (852)
Q Consensus 643 ~va~~vn~Dp~v~~~lKVvFlen---Y--~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi 717 (852)
++++ +-.+.+ +|.|+.. + +-.+.+.+-.++|+..+.|. .|+.|.+-+-+|.-|++.|+|-.|-..||
T Consensus 633 ~La~----~lgL~~--~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~--~EgFGLvvLEAMA~GlPVVATdvGG~~EI 704 (815)
T PLN00142 633 SLIE----KYNLKG--QFRWIAAQTNRVRNGELYRYIADTKGAFVQPAL--YEAFGLTVVEAMTCGLPTFATCQGGPAEI 704 (815)
T ss_pred HHHH----HcCCCC--cEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCc--ccCCCHHHHHHHHcCCCEEEcCCCCHHHH
Confidence 4444 223455 6888753 2 12345555557899987765 79999999999999999999999999988
Q ss_pred cccccccceEeccc
Q 003055 718 RQEVGEENFFLFGA 731 (852)
Q Consensus 718 ~e~vg~eN~f~FG~ 731 (852)
.+.. +|+|++-.
T Consensus 705 V~dG--~tG~LV~P 716 (815)
T PLN00142 705 IVDG--VSGFHIDP 716 (815)
T ss_pred hcCC--CcEEEeCC
Confidence 7654 78888864
No 23
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=97.05 E-value=0.0093 Score=64.81 Aligned_cols=136 Identities=17% Similarity=0.137 Sum_probs=92.6
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCC-CcHHHHHHHHHHHHHhhhhc
Q 003055 571 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFA-TYVQAKRIVKFITDVGATVN 649 (852)
Q Consensus 571 ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P-~y~~aK~iIk~I~~va~~vn 649 (852)
++++....+++-|+..+|...+ ++..+.+ +++..+. ...++++.|...+ ++..-..+.+++...
T Consensus 215 ~~~~~~~i~~~G~l~~~K~~~~-li~a~~~---l~~~~~~------~~~~l~ivG~~~~~g~~~~~~l~~~~~~~----- 279 (405)
T TIGR03449 215 LPLDTKVVAFVGRIQPLKAPDV-LLRAVAE---LLDRDPD------RNLRVIVVGGPSGSGLATPDALIELAAEL----- 279 (405)
T ss_pred CCCCCcEEEEecCCCcccCHHH-HHHHHHH---HHhhCCC------cceEEEEEeCCCCCcchHHHHHHHHHHHc-----
Confidence 4566778899999999998776 6655544 3321111 1257788886443 323334455554333
Q ss_pred CCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEec
Q 003055 650 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 729 (852)
Q Consensus 650 ~Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~F 729 (852)
.+.+ +|.|+..-.-+-...++.+||+-...|. .|..|++-+-+|.-|++.|+|-.|...|+.++. .+++++
T Consensus 280 ---~l~~--~v~~~g~~~~~~~~~~l~~ad~~v~ps~--~E~~g~~~lEAma~G~Pvi~~~~~~~~e~i~~~--~~g~~~ 350 (405)
T TIGR03449 280 ---GIAD--RVRFLPPRPPEELVHVYRAADVVAVPSY--NESFGLVAMEAQACGTPVVAARVGGLPVAVADG--ETGLLV 350 (405)
T ss_pred ---CCCc--eEEECCCCCHHHHHHHHHhCCEEEECCC--CCCcChHHHHHHHcCCCEEEecCCCcHhhhccC--CceEEC
Confidence 2233 6888875555556678999999988765 589999999999999999999889888766433 566766
Q ss_pred c
Q 003055 730 G 730 (852)
Q Consensus 730 G 730 (852)
.
T Consensus 351 ~ 351 (405)
T TIGR03449 351 D 351 (405)
T ss_pred C
Confidence 4
No 24
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.01 E-value=0.0019 Score=61.95 Aligned_cols=120 Identities=18% Similarity=0.105 Sum_probs=89.4
Q ss_pred ccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcce
Q 003055 580 QVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLK 659 (852)
Q Consensus 580 q~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~v~~~lK 659 (852)
++-|+..+|...+ ++..+.+..+- ....+++|.|+..+.+...+.+.+ . ...+ +
T Consensus 109 ~~g~~~~~k~~~~-~~~a~~~l~~~-----------~~~~~~~i~G~~~~~~~~~~~~~~----~--------~~~~--~ 162 (229)
T cd01635 109 FVGRLAPEKGLDD-LIEAFALLKER-----------GPDLKLVIAGDGPEREYLEELLAA----L--------LLLD--R 162 (229)
T ss_pred EEEeecccCCHHH-HHHHHHHHHHh-----------CCCeEEEEEeCCCChHHHHHHHHh----c--------CCcc--c
Confidence 8889999998877 65555543221 125689999999887766655211 1 1122 6
Q ss_pred EEEecCC-ChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEec
Q 003055 660 VIFVPDY-NVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 729 (852)
Q Consensus 660 VvFlenY-~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~F 729 (852)
|.|++.+ ..+..+.+..+||+....|+. |+.|++-+-+|..|.+.|+|-+|++-|+.++ .+++|+|
T Consensus 163 v~~~~~~~~~~~~~~~~~~~di~l~~~~~--e~~~~~~~Eam~~g~pvi~s~~~~~~e~i~~--~~~g~~~ 229 (229)
T cd01635 163 VIFLGGLDPEELLALLLAAADVFVLPSLR--EGFGLVVLEAMACGLPVIATDVGGPPEIVED--GLTGLLV 229 (229)
T ss_pred EEEeCCCCcHHHHHHHhhcCCEEEecccc--cCcChHHHHHHhCCCCEEEcCCCCcceEEEC--CCceEEC
Confidence 8999887 567777788889999987775 5999999999999999999999999986544 3677765
No 25
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=96.92 E-value=0.0023 Score=61.10 Aligned_cols=133 Identities=20% Similarity=0.221 Sum_probs=95.0
Q ss_pred cCCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhc
Q 003055 570 SVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVN 649 (852)
Q Consensus 570 ~ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn 649 (852)
..+.+..+..++-|+..+|+..+ ++..+.++.+=+ .....+++.|.. ...+.+..++....
T Consensus 10 ~~~~~~~~il~~g~~~~~K~~~~-li~a~~~l~~~~----------~~~~~l~i~G~~----~~~~~~~~~~~~~~---- 70 (172)
T PF00534_consen 10 KIPDKKKIILFIGRLDPEKGIDL-LIEAFKKLKEKK----------NPNYKLVIVGDG----EYKKELKNLIEKLN---- 70 (172)
T ss_dssp TT-TTSEEEEEESESSGGGTHHH-HHHHHHHHHHHH----------HTTEEEEEESHC----CHHHHHHHHHHHTT----
T ss_pred CCCCCCeEEEEEecCccccCHHH-HHHHHHHHHhhc----------CCCeEEEEEccc----cccccccccccccc----
Confidence 45677889999999999999999 888777664321 125689999921 12223333333321
Q ss_pred CCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEec
Q 003055 650 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 729 (852)
Q Consensus 650 ~Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~F 729 (852)
+.. +|.|+....-.-...++..||+..+.|+. |..|++-+-+|..|++.|+|--|..-|+.... .|+++|
T Consensus 71 ----~~~--~i~~~~~~~~~~l~~~~~~~di~v~~s~~--e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~--~~g~~~ 140 (172)
T PF00534_consen 71 ----LKE--NIIFLGYVPDDELDELYKSSDIFVSPSRN--EGFGLSLLEAMACGCPVIASDIGGNNEIINDG--VNGFLF 140 (172)
T ss_dssp ----CGT--TEEEEESHSHHHHHHHHHHTSEEEE-BSS--BSS-HHHHHHHHTT-EEEEESSTHHHHHSGTT--TSEEEE
T ss_pred ----ccc--cccccccccccccccccccceeccccccc--cccccccccccccccceeeccccCCceeeccc--cceEEe
Confidence 222 58888877655667778889999999999 99999999999999999999989998888765 478888
Q ss_pred cc
Q 003055 730 GA 731 (852)
Q Consensus 730 G~ 731 (852)
-.
T Consensus 141 ~~ 142 (172)
T PF00534_consen 141 DP 142 (172)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 26
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=96.89 E-value=0.007 Score=61.23 Aligned_cols=129 Identities=18% Similarity=0.023 Sum_probs=91.0
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003055 572 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 651 (852)
Q Consensus 572 dpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 651 (852)
+++....+++-|+..+|+..+ ++..+.+ +++ . ..+.++++.|...+.+...+. ++....
T Consensus 185 ~~~~~~i~~~G~~~~~k~~~~-li~~~~~---l~~-~-------~~~~~l~i~G~~~~~~~~~~~---~~~~~~------ 243 (359)
T cd03808 185 PEDDPVFLFVARLLKDKGIDE-LLEAARI---LKA-K-------GPNVRLLLVGDGDEENPAAIL---EIEKLG------ 243 (359)
T ss_pred CCCCcEEEEEeccccccCHHH-HHHHHHH---HHh-c-------CCCeEEEEEcCCCcchhhHHH---HHHhcC------
Confidence 456788899999999998877 6665544 332 0 125789999998877766544 222211
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 003055 652 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 731 (852)
Q Consensus 652 p~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG~ 731 (852)
... +|.|+.. .+-...++..||+-...|.. |..|++-+-+|..|++.|+|-.|..-|+.++ .++++++..
T Consensus 244 --~~~--~v~~~g~--~~~~~~~~~~adi~i~ps~~--e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~--~~~g~~~~~ 313 (359)
T cd03808 244 --LEG--RVEFLGF--RDDVPELLAAADVFVLPSYR--EGLPRVLLEAMAMGRPVIATDVPGCREAVID--GVNGFLVPP 313 (359)
T ss_pred --Ccc--eEEEeec--cccHHHHHHhccEEEecCcc--cCcchHHHHHHHcCCCEEEecCCCchhhhhc--CcceEEECC
Confidence 112 6777765 44566788899998876655 9999999999999999999977777766643 256777643
No 27
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.81 E-value=0.013 Score=66.70 Aligned_cols=123 Identities=14% Similarity=0.090 Sum_probs=88.9
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003055 572 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 651 (852)
Q Consensus 572 dpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 651 (852)
+++....+++-|+..+|.... ++..+.+ +++ . .....+++.|.........+++-+++.+.+
T Consensus 290 ~~~~~~i~~vGrl~~~Kg~~~-li~a~~~---l~~-~-------~p~~~l~IvG~g~~~~~~~~e~~~li~~l~------ 351 (475)
T cd03813 290 EKEPPVVGLIGRVVPIKDIKT-FIRAAAI---VRK-K-------IPDAEGWVIGPTDEDPEYAEECRELVESLG------ 351 (475)
T ss_pred CCCCcEEEEEeccccccCHHH-HHHHHHH---HHH-h-------CCCeEEEEECCCCcChHHHHHHHHHHHHhC------
Confidence 356778999999999999877 6665544 332 0 124678888876444455566666665543
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccc
Q 003055 652 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEV 721 (852)
Q Consensus 652 p~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~v 721 (852)
+.+ +|.|+. ...+.+ +++++|+-...|. .|+.|++-+-+|.-|++.|+|--|...|+.++.
T Consensus 352 --l~~--~V~f~G--~~~v~~-~l~~aDv~vlpS~--~Eg~p~~vlEAma~G~PVVatd~g~~~elv~~~ 412 (475)
T cd03813 352 --LED--NVKFTG--FQNVKE-YLPKLDVLVLTSI--SEGQPLVILEAMAAGIPVVATDVGSCRELIEGA 412 (475)
T ss_pred --CCC--eEEEcC--CccHHH-HHHhCCEEEeCch--hhcCChHHHHHHHcCCCEEECCCCChHHHhcCC
Confidence 223 788988 445554 5689999998876 599999999999999999999888888877654
No 28
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=96.79 E-value=0.0085 Score=64.27 Aligned_cols=147 Identities=18% Similarity=0.175 Sum_probs=99.1
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003055 571 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 650 (852)
Q Consensus 571 ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 650 (852)
..++..+.+++-|+.+.|.+.+ ++..+.++.+-. + . .....+++.|...+.....-...+.+.+.++..
T Consensus 207 ~~~~~~~i~~~grl~~~Kg~~~-ll~a~~~l~~~~---~-~----~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~-- 275 (392)
T cd03805 207 PKSGKKTFLSINRFERKKNIAL-AIEAFAILKDKL---A-E----FKNVRLVIAGGYDPRVAENVEYLEELQRLAEEL-- 275 (392)
T ss_pred cCCCceEEEEEeeecccCChHH-HHHHHHHHHhhc---c-c----ccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHh--
Confidence 3456788899999999999988 777766643221 0 0 124678888876654333323333333333210
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 003055 651 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 730 (852)
Q Consensus 651 Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG 730 (852)
..+.+ +|+|+....-.....++.+||+....|. .|..|.+-+-+|..|++.|+|--|...|+.... .+++++.
T Consensus 276 -~~l~~--~V~f~g~~~~~~~~~~l~~ad~~l~~s~--~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~~--~~g~~~~ 348 (392)
T cd03805 276 -LLLED--QVIFLPSISDSQKELLLSSARALLYTPS--NEHFGIVPLEAMYAGKPVIACNSGGPLETVVDG--ETGFLCE 348 (392)
T ss_pred -cCCCc--eEEEeCCCChHHHHHHHhhCeEEEECCC--cCCCCchHHHHHHcCCCEEEECCCCcHHHhccC--CceEEeC
Confidence 12333 7999988766666678899999887665 598999999999999999999777777765432 5677775
Q ss_pred cchhh
Q 003055 731 ARAHE 735 (852)
Q Consensus 731 ~~~~e 735 (852)
.+.++
T Consensus 349 ~~~~~ 353 (392)
T cd03805 349 PTPEE 353 (392)
T ss_pred CCHHH
Confidence 44433
No 29
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=96.69 E-value=0.036 Score=59.95 Aligned_cols=134 Identities=15% Similarity=0.091 Sum_probs=88.6
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003055 571 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 650 (852)
Q Consensus 571 ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 650 (852)
++++..+.+++=|++..|...+ ++..+.++.+. . ...+++++|...+.+...+.+.+.+.+..
T Consensus 186 ~~~~~~~i~~vgrl~~~Kg~~~-ll~a~~~l~~~---~--------~~~~l~i~G~g~~~~~~~~~~~~~~~~~~----- 248 (372)
T cd03792 186 IDPERPYITQVSRFDPWKDPFG-VIDAYRKVKER---V--------PDPQLVLVGSGATDDPEGWIVYEEVLEYA----- 248 (372)
T ss_pred CCCCCcEEEEEeccccccCcHH-HHHHHHHHHhh---C--------CCCEEEEEeCCCCCCchhHHHHHHHHHHh-----
Confidence 5678888999999999999998 76665554322 1 13467788876554333344444443321
Q ss_pred CcCCCCcceEEEecCC--ChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEe
Q 003055 651 DPEIGDLLKVIFVPDY--NVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFL 728 (852)
Q Consensus 651 Dp~v~~~lKVvFlenY--~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~ 728 (852)
...+ +|+|+... .-.....++.+||+-...|+ .|..|-+-+-+|..|.+.|+|--|...|+... ..++++
T Consensus 249 --~~~~--~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~--~Eg~g~~~lEA~a~G~Pvv~s~~~~~~~~i~~--~~~g~~ 320 (372)
T cd03792 249 --EGDP--DIHVLTLPPVSDLEVNALQRASTVVLQKSI--REGFGLTVTEALWKGKPVIAGPVGGIPLQIED--GETGFL 320 (372)
T ss_pred --CCCC--CeEEEecCCCCHHHHHHHHHhCeEEEeCCC--ccCCCHHHHHHHHcCCCEEEcCCCCchhhccc--CCceEE
Confidence 1222 57777665 44556678999999976655 69899999999999999999965554443322 244554
Q ss_pred c
Q 003055 729 F 729 (852)
Q Consensus 729 F 729 (852)
+
T Consensus 321 ~ 321 (372)
T cd03792 321 V 321 (372)
T ss_pred e
Confidence 4
No 30
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=96.65 E-value=0.021 Score=60.65 Aligned_cols=134 Identities=13% Similarity=0.085 Sum_probs=86.8
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEec-cCCCCcHHHHHHHHHHHHHhhhhcC
Q 003055 572 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGG-KAFATYVQAKRIVKFITDVGATVNH 650 (852)
Q Consensus 572 dpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaG-KA~P~y~~aK~iIk~I~~va~~vn~ 650 (852)
.++....+++-|+...|...+ ++..+.++.+. . .+.++++.| ...+.......-++.+ .+..
T Consensus 217 ~~~~~~i~~~gr~~~~k~~~~-ll~a~~~l~~~---~--------~~~~l~i~G~~~~~~~~~~~~~~~~~---~~~~-- 279 (398)
T cd03800 217 DPDKPRILAVGRLDPRKGIDT-LIRAYAELPEL---R--------ERANLVIVGGPRDDILAMDEEELREL---AREL-- 279 (398)
T ss_pred CCCCcEEEEEcccccccCHHH-HHHHHHHHHHh---C--------CCeEEEEEECCCCcchhhhhHHHHHH---HHhc--
Confidence 455677889999998888766 66665554322 1 134555554 4443322222222222 2211
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 003055 651 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 730 (852)
Q Consensus 651 Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG 730 (852)
.+.+ +|.|++-..-+-...++..||+-...|. .|..|.+-+-+|..|.+.|++-.|..-|+.++. +++++|.
T Consensus 280 --~~~~--~v~~~g~~~~~~~~~~~~~adi~l~ps~--~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i~~~--~~g~~~~ 351 (398)
T cd03800 280 --GVID--RVDFPGRVSREDLPALYRAADVFVNPAL--YEPFGLTALEAMACGLPVVATAVGGPRDIVVDG--VTGLLVD 351 (398)
T ss_pred --CCCc--eEEEeccCCHHHHHHHHHhCCEEEeccc--ccccCcHHHHHHhcCCCEEECCCCCHHHHccCC--CCeEEeC
Confidence 1222 6889888777666778888999887665 589999999999999999999888877766543 4666653
No 31
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.51 E-value=0.02 Score=62.75 Aligned_cols=137 Identities=15% Similarity=0.181 Sum_probs=89.1
Q ss_pred CCCCccccccccc-ccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHH----HH-HHHHHHHHH
Q 003055 571 VSPDAMFDIQVKR-IHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQ----AK-RIVKFITDV 644 (852)
Q Consensus 571 ldpdslfdvq~kR-~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~----aK-~iIk~I~~v 644 (852)
++++....+++=| +..+|...+ ++..+.++ ++.. ....+++.|...|.|.. +. ..-+++..+
T Consensus 207 ~~~~~~~i~~vgR~l~~~Kg~~~-ll~a~~~l---~~~~--------~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~ 274 (396)
T cd03818 207 LTPGDEVITFVARNLEPYRGFHV-FMRALPRL---LRAR--------PDARVVIVGGDGVSYGAPPPDGESWKQHMLDEL 274 (396)
T ss_pred CCCCCeEEEEECCCcccccCHHH-HHHHHHHH---HHHC--------CCcEEEEEcCCCcccCCCCCCcccHHHHHHHHh
Confidence 4566677888877 999998877 66665543 3201 23567888875554321 11 111223333
Q ss_pred hhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccccccccccccccc
Q 003055 645 GATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEE 724 (852)
Q Consensus 645 a~~vn~Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~e 724 (852)
+...+ .+ +|.|+....-.-...++.+||+....|. .|..|.+-+-+|.-|++.|+|-.|..-|+.+.. +
T Consensus 275 ~~~~~-----~~--~V~f~G~v~~~~~~~~l~~adv~v~~s~--~e~~~~~llEAmA~G~PVIas~~~g~~e~i~~~--~ 343 (396)
T cd03818 275 GGRLD-----LS--RVHFLGRVPYDQYLALLQVSDVHVYLTY--PFVLSWSLLEAMACGCLVVGSDTAPVREVITDG--E 343 (396)
T ss_pred hcccC-----cc--eEEEeCCCCHHHHHHHHHhCcEEEEcCc--ccccchHHHHHHHCCCCEEEcCCCCchhhcccC--C
Confidence 32111 12 6999987655555667899999987765 477777889999999999999888877776542 6
Q ss_pred ceEecc
Q 003055 725 NFFLFG 730 (852)
Q Consensus 725 N~f~FG 730 (852)
|++++-
T Consensus 344 ~G~lv~ 349 (396)
T cd03818 344 NGLLVD 349 (396)
T ss_pred ceEEcC
Confidence 777764
No 32
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=96.47 E-value=0.033 Score=56.68 Aligned_cols=127 Identities=19% Similarity=0.161 Sum_probs=85.4
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003055 571 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 650 (852)
Q Consensus 571 ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 650 (852)
++++..+.+++-|++.+|+... ++..+.+ +++ . ..+.++++.|+...... -+..++ ..
T Consensus 189 ~~~~~~~i~~~G~~~~~K~~~~-li~a~~~---l~~-~-------~~~~~l~i~G~~~~~~~-~~~~~~--~~------- 246 (365)
T cd03807 189 LPEDTFLIGIVARLHPQKDHAT-LLRAAAL---LLK-K-------FPNARLLLVGDGPDRAN-LELLAL--KE------- 246 (365)
T ss_pred CCCCCeEEEEecccchhcCHHH-HHHHHHH---HHH-h-------CCCeEEEEecCCcchhH-HHHHHH--Hh-------
Confidence 4567788899999999999876 6665544 332 0 12568999998654432 222222 01
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 003055 651 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 730 (852)
Q Consensus 651 Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG 730 (852)
-.+.+ +|.|+.. ++-...++..||+-...|.. |..|++-+-+|.-|++.|+|--|..-|+.++ ++++|.
T Consensus 247 -~~~~~--~v~~~g~--~~~~~~~~~~adi~v~ps~~--e~~~~~~~Ea~a~g~PvI~~~~~~~~e~~~~----~g~~~~ 315 (365)
T cd03807 247 -LGLED--KVILLGE--RSDVPALLNALDVFVLSSLS--EGFPNVLLEAMACGLPVVATDVGDNAELVGD----TGFLVP 315 (365)
T ss_pred -cCCCc--eEEEccc--cccHHHHHHhCCEEEeCCcc--ccCCcHHHHHHhcCCCEEEcCCCChHHHhhc----CCEEeC
Confidence 11222 5666653 33345678999999877666 9999999999999999999988877766543 555553
No 33
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=96.45 E-value=0.018 Score=63.12 Aligned_cols=134 Identities=15% Similarity=0.131 Sum_probs=92.8
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003055 572 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 651 (852)
Q Consensus 572 dpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 651 (852)
+++....+++-|+...|...+ ++..+.. +++. ....+++++|.. |.. ..+-+++.+.
T Consensus 190 ~~~~~~i~~~grl~~~Kg~~~-li~a~~~---l~~~--------~~~~~l~i~G~g-~~~---~~l~~~~~~~------- 246 (398)
T cd03796 190 DNDKITIVVISRLVYRKGIDL-LVGIIPE---ICKK--------HPNVRFIIGGDG-PKR---ILLEEMREKY------- 246 (398)
T ss_pred CCCceEEEEEeccchhcCHHH-HHHHHHH---HHhh--------CCCEEEEEEeCC-chH---HHHHHHHHHh-------
Confidence 356778999999999999887 6665543 4321 125688889864 322 2233333322
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 003055 652 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 731 (852)
Q Consensus 652 p~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG~ 731 (852)
.+.+ +|.|+...+-+-...++++||+-...|. .|..|.+-+-+|..|++-|+|--|..-|+.++. +.++...
T Consensus 247 -~l~~--~v~~~G~~~~~~~~~~l~~ad~~v~pS~--~E~~g~~~~EAma~G~PVI~s~~gg~~e~i~~~---~~~~~~~ 318 (398)
T cd03796 247 -NLQD--RVELLGAVPHERVRDVLVQGHIFLNTSL--TEAFCIAIVEAASCGLLVVSTRVGGIPEVLPPD---MILLAEP 318 (398)
T ss_pred -CCCC--eEEEeCCCCHHHHHHHHHhCCEEEeCCh--hhccCHHHHHHHHcCCCEEECCCCCchhheeCC---ceeecCC
Confidence 2334 6888876666666778899999998776 599999999999999999999989888877542 3344443
Q ss_pred chhhh
Q 003055 732 RAHEI 736 (852)
Q Consensus 732 ~~~ev 736 (852)
+.+++
T Consensus 319 ~~~~l 323 (398)
T cd03796 319 DVESI 323 (398)
T ss_pred CHHHH
Confidence 44443
No 34
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.40 E-value=0.04 Score=58.26 Aligned_cols=127 Identities=19% Similarity=0.254 Sum_probs=86.4
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003055 571 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 650 (852)
Q Consensus 571 ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 650 (852)
++++....+++-|+..+|.... ++..+ .++++ ..|.++++.|.. |.. +.+.+++...+
T Consensus 193 ~~~~~~~il~~g~l~~~K~~~~-li~a~---~~l~~---------~~~~~l~i~G~g-~~~---~~~~~~~~~~~----- 250 (371)
T cd04962 193 APEGEKVLIHISNFRPVKRIDD-VIRIF---AKVRK---------EVPARLLLVGDG-PER---SPAERLARELG----- 250 (371)
T ss_pred CCCCCeEEEEecccccccCHHH-HHHHH---HHHHh---------cCCceEEEEcCC-cCH---HHHHHHHHHcC-----
Confidence 4567778889999999999877 65544 33442 125678888865 222 33333333221
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 003055 651 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 730 (852)
Q Consensus 651 Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG 730 (852)
+.+ +|.|+... +-...++.+||+....|+ .|+.|.+-+-+|..|++.|+|--|..-|+.++. .|+|+|-
T Consensus 251 ---~~~--~v~~~g~~--~~~~~~~~~~d~~v~ps~--~E~~~~~~~EAma~g~PvI~s~~~~~~e~i~~~--~~G~~~~ 319 (371)
T cd04962 251 ---LQD--DVLFLGKQ--DHVEELLSIADLFLLPSE--KESFGLAALEAMACGVPVVASNAGGIPEVVKHG--ETGFLVD 319 (371)
T ss_pred ---CCc--eEEEecCc--ccHHHHHHhcCEEEeCCC--cCCCccHHHHHHHcCCCEEEeCCCCchhhhcCC--CceEEcC
Confidence 223 68887743 334566889999998875 799999999999999999999777766655442 5666653
No 35
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=96.35 E-value=0.056 Score=55.90 Aligned_cols=134 Identities=13% Similarity=0.067 Sum_probs=85.1
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHH-HHHHHHHhhhhcC
Q 003055 572 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRI-VKFITDVGATVNH 650 (852)
Q Consensus 572 dpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~i-Ik~I~~va~~vn~ 650 (852)
.++....+++-|++++|.... ++..+.+ +++ . ..+.++++.|..++....-+.. .++|.+.+
T Consensus 182 ~~~~~~i~~~G~~~~~K~~~~-ll~a~~~---~~~-~-------~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~----- 244 (366)
T cd03822 182 LDGRPVLLTFGLLRPYKGLEL-LLEALPL---LVA-K-------HPDVRLLVAGETHPDLERYRGEAYALAERLG----- 244 (366)
T ss_pred CCCCeEEEEEeeccCCCCHHH-HHHHHHH---HHh-h-------CCCeEEEEeccCccchhhhhhhhHhHHHhcC-----
Confidence 345677888899999998766 6655554 332 1 1256889999877655433221 12233222
Q ss_pred CcCCCCcceEEEecC-CChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEec
Q 003055 651 DPEIGDLLKVIFVPD-YNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 729 (852)
Q Consensus 651 Dp~v~~~lKVvFlen-Y~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~F 729 (852)
+.+ +|.|++. ..-+-...++..||+-...|+...+.-|..-+-+|.-|.+.|+|-.|. .|.... ..++++|
T Consensus 245 ---~~~--~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i~~--~~~g~~~ 316 (366)
T cd03822 245 ---LAD--RVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEEVLD--GGTGLLV 316 (366)
T ss_pred ---CCC--cEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-hheeee--CCCcEEE
Confidence 233 6999988 455556678899999887655333355555667899999999997777 443322 3566665
Q ss_pred c
Q 003055 730 G 730 (852)
Q Consensus 730 G 730 (852)
.
T Consensus 317 ~ 317 (366)
T cd03822 317 P 317 (366)
T ss_pred c
Confidence 4
No 36
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=96.34 E-value=0.047 Score=61.39 Aligned_cols=138 Identities=15% Similarity=0.125 Sum_probs=87.9
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCC-CcH--HHHHHHHHHHHHhhhh
Q 003055 572 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFA-TYV--QAKRIVKFITDVGATV 648 (852)
Q Consensus 572 dpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P-~y~--~aK~iIk~I~~va~~v 648 (852)
+++..+.+++=|+++.|.+.+ ++..+.++.+++. .|..+|++|.... ... ..+...+.+..+++.+
T Consensus 245 ~~~~~~i~~vGrl~~~Kg~~~-li~A~~~l~~~~~----------~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~ 313 (439)
T TIGR02472 245 DPEKPPILAISRPDRRKNIPS-LVEAYGRSPKLQE----------MANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRY 313 (439)
T ss_pred ccCCcEEEEEcCCcccCCHHH-HHHHHHhChhhhh----------hccEEEEeCCccccccccHHHHHHHHHHHHHHHHc
Confidence 566678889999999999988 7777655433432 1333445664321 111 2223333333333221
Q ss_pred cCCcCCCCcceEEEecCCChhhhhhhcccc----ccccccCCCccccCCCccchhhcccceEeeeccccccccccccccc
Q 003055 649 NHDPEIGDLLKVIFVPDYNVSVAELLIPAS----ELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEE 724 (852)
Q Consensus 649 n~Dp~v~~~lKVvFlenY~vslAe~lipa~----Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~e 724 (852)
.+.+ +|.|+....-+-...++++| |+-..-|. .|+.|..-+-+|.-|++.|+|--|...|+.+.. +
T Consensus 314 ----~l~~--~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~--~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~~--~ 383 (439)
T TIGR02472 314 ----DLYG--KVAYPKHHRPDDVPELYRLAARSRGIFVNPAL--TEPFGLTLLEAAACGLPIVATDDGGPRDIIANC--R 383 (439)
T ss_pred ----CCCc--eEEecCCCCHHHHHHHHHHHhhcCCEEecccc--cCCcccHHHHHHHhCCCEEEeCCCCcHHHhcCC--C
Confidence 2444 68888654444444555555 88776665 599999999999999999999888888876542 6
Q ss_pred ceEecc
Q 003055 725 NFFLFG 730 (852)
Q Consensus 725 N~f~FG 730 (852)
|++++-
T Consensus 384 ~G~lv~ 389 (439)
T TIGR02472 384 NGLLVD 389 (439)
T ss_pred cEEEeC
Confidence 777774
No 37
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=96.31 E-value=0.061 Score=60.18 Aligned_cols=128 Identities=18% Similarity=0.120 Sum_probs=88.5
Q ss_pred cccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCC
Q 003055 575 AMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEI 654 (852)
Q Consensus 575 slfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~v 654 (852)
.+..+++-|+.++|.... ++..+.+ +++ . ..+.++++.|.. . .-.++.+++.+.+ +
T Consensus 222 ~~~il~vGrl~~~Kg~~~-ll~a~~~---l~~-~-------~~~~~l~ivG~G---~-~~~~l~~~~~~~~--------l 277 (406)
T PRK15427 222 PLEIISVARLTEKKGLHV-AIEACRQ---LKE-Q-------GVAFRYRILGIG---P-WERRLRTLIEQYQ--------L 277 (406)
T ss_pred CeEEEEEeCcchhcCHHH-HHHHHHH---HHh-h-------CCCEEEEEEECc---h-hHHHHHHHHHHcC--------C
Confidence 456788999999999877 6666544 432 1 124677777753 1 2234555554432 2
Q ss_pred CCcceEEEecCCChhhhhhhccccccccccCCCc----cccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 003055 655 GDLLKVIFVPDYNVSVAELLIPASELSQHISTAG----MEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 730 (852)
Q Consensus 655 ~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag----~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG 730 (852)
.+ +|.|+.-..-+-...++.+||+....|..+ +|+.|..-|-+|.-|.+.|+|-.|...|+.+.. +|++++.
T Consensus 278 ~~--~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E~v~~~--~~G~lv~ 353 (406)
T PRK15427 278 ED--VVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEAD--KSGWLVP 353 (406)
T ss_pred CC--eEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchhhhcCC--CceEEeC
Confidence 33 677776544444567889999999887653 688899999999999999999888888776543 6777764
No 38
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=96.27 E-value=0.049 Score=56.33 Aligned_cols=120 Identities=15% Similarity=0.051 Sum_probs=84.9
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003055 572 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 651 (852)
Q Consensus 572 dpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 651 (852)
.++....+++-|+..+|+..+ ++..+.. +++.+ .+.++++.|...+.+......+ .+.
T Consensus 192 ~~~~~~i~~~G~~~~~K~~~~-~l~~~~~---~~~~~--------~~~~l~i~G~~~~~~~~~~~~~---~~~------- 249 (365)
T cd03809 192 LLPRPYFLYVGTIEPRKNLER-LLEAFAR---LPAKG--------PDPKLVIVGKRGWLNEELLARL---REL------- 249 (365)
T ss_pred CCCCCeEEEeCCCccccCHHH-HHHHHHH---HHHhc--------CCCCEEEecCCccccHHHHHHH---HHc-------
Confidence 345667889999999998776 6655444 43201 1467888888777666554444 111
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccccccccc
Q 003055 652 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIR 718 (852)
Q Consensus 652 p~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~ 718 (852)
...+ +|.|+...+-+-...++..||+-...|+ .|..|.+-+-+|.-|++.|+|--|+..|+.
T Consensus 250 -~~~~--~v~~~g~~~~~~~~~~~~~~d~~l~ps~--~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~ 311 (365)
T cd03809 250 -GLGD--RVRFLGYVSDEELAALYRGARAFVFPSL--YEGFGLPVLEAMACGTPVIASNISSLPEVA 311 (365)
T ss_pred -CCCC--eEEECCCCChhHHHHHHhhhhhhcccch--hccCCCCHHHHhcCCCcEEecCCCCcccee
Confidence 1222 6888877766666788899999887665 488888999999999999999777776654
No 39
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=96.21 E-value=0.03 Score=70.21 Aligned_cols=188 Identities=14% Similarity=0.174 Sum_probs=118.2
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCc------HHHHHHHHHHHHH
Q 003055 571 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY------VQAKRIVKFITDV 644 (852)
Q Consensus 571 ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y------~~aK~iIk~I~~v 644 (852)
.+|+..+++++-|+...|.... ++..+.++.++.. ....++|.|+...... .....+.++|.++
T Consensus 475 ~~pdkpvIL~VGRL~p~KGi~~-LIeAf~~L~~l~~---------~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~~l 544 (1050)
T TIGR02468 475 TNPRKPMILALARPDPKKNITT-LVKAFGECRPLRE---------LANLTLIMGNRDDIDEMSSGSSSVLTSVLKLIDKY 544 (1050)
T ss_pred ccCCCcEEEEEcCCccccCHHH-HHHHHHHhHhhcc---------CCCEEEEEecCchhhhhhccchHHHHHHHHHHHHh
Confidence 3578889999999999999888 7766665544322 1123445544221110 1123344444333
Q ss_pred hhhhcCCcCCCCcceEEEecCCChhhhhhhcccc----ccccccCCCccccCCCccchhhcccceEeeeccccccccccc
Q 003055 645 GATVNHDPEIGDLLKVIFVPDYNVSVAELLIPAS----ELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQE 720 (852)
Q Consensus 645 a~~vn~Dp~v~~~lKVvFlenY~vslAe~lipa~----Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~ 720 (852)
.+.+ +|.|+.--.-+-...++..| ||..+.|. .|.-|..-+-||.-|.+.|+|-.|...||.+.
T Consensus 545 --------gL~g--~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~--~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~ 612 (1050)
T TIGR02468 545 --------DLYG--QVAYPKHHKQSDVPDIYRLAAKTKGVFINPAF--IEPFGLTLIEAAAHGLPMVATKNGGPVDIHRV 612 (1050)
T ss_pred --------CCCC--eEEecCCCCHHHHHHHHHHhhhcCCeeeCCcc--cCCCCHHHHHHHHhCCCEEEeCCCCcHHHhcc
Confidence 2445 68776532222223344444 68777665 69999999999999999999999999988765
Q ss_pred ccccceEecccchhhhhhhhhhcCCCCCCCChhHHHHHHHHhcCCCCcccHHHHHHHhccCCCCCCCcccccccchhHHH
Q 003055 721 VGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYL 800 (852)
Q Consensus 721 vg~eN~f~FG~~~~ev~~l~~~~~~~~~~~~~~~~~v~d~i~~g~f~~~~~~~l~~~L~~~~~~~~~D~y~vlaDF~sY~ 800 (852)
. +|+++|-.. |-..|.+
T Consensus 613 g--~nGlLVdP~-------------------------------------D~eaLA~------------------------ 629 (1050)
T TIGR02468 613 L--DNGLLVDPH-------------------------------------DQQAIAD------------------------ 629 (1050)
T ss_pred C--CcEEEECCC-------------------------------------CHHHHHH------------------------
Confidence 4 788887431 1222222
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHhhhcCCCCChhHHHHHHHHHHhccc
Q 003055 801 ECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNII 847 (852)
Q Consensus 801 ~aQ~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~~iw~i~ 847 (852)
.+.+.+.|++.|.+|........-.||-++++++|.+.+=.+.
T Consensus 630 ----AL~~LL~Dpelr~~m~~~gr~~v~~FSWe~ia~~yl~~i~~~~ 672 (1050)
T TIGR02468 630 ----ALLKLVADKQLWAECRQNGLKNIHLFSWPEHCKTYLSRIASCR 672 (1050)
T ss_pred ----HHHHHhhCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHh
Confidence 2233445777777776665554446999999999987765543
No 40
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=96.15 E-value=0.086 Score=53.09 Aligned_cols=130 Identities=16% Similarity=0.140 Sum_probs=87.0
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003055 572 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 651 (852)
Q Consensus 572 dpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 651 (852)
.++....+++-|+..+|.-.. ++.. +..+++. ....++++.|. -.....+.+++...
T Consensus 196 ~~~~~~i~~~g~~~~~k~~~~-~i~~---~~~~~~~--------~~~~~l~i~G~----~~~~~~~~~~~~~~------- 252 (374)
T cd03801 196 PEDEPVILFVGRLVPRKGVDL-LLEA---LAKLRKE--------YPDVRLVIVGD----GPLREELEALAAEL------- 252 (374)
T ss_pred cCCCeEEEEecchhhhcCHHH-HHHH---HHHHhhh--------cCCeEEEEEeC----cHHHHHHHHHHHHh-------
Confidence 456778889999998887555 4443 3334321 12467888881 12222233333222
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 003055 652 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 731 (852)
Q Consensus 652 p~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG~ 731 (852)
...+ +|.|++...-+-...++..||+-.+.++. |+.|++-+-++..|++.|+|-.|+.-|+.+. ..+++++..
T Consensus 253 -~~~~--~v~~~g~~~~~~~~~~~~~~di~i~~~~~--~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~--~~~g~~~~~ 325 (374)
T cd03801 253 -GLGD--RVTFLGFVPDEDLPALYAAADVFVLPSLY--EGFGLVLLEAMAAGLPVVASDVGGIPEVVED--GETGLLVPP 325 (374)
T ss_pred -CCCc--ceEEEeccChhhHHHHHHhcCEEEecchh--ccccchHHHHHHcCCcEEEeCCCChhHHhcC--CcceEEeCC
Confidence 1223 68888887656667778889999887776 9999999999999999999987888776654 356666654
No 41
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=96.01 E-value=0.096 Score=57.83 Aligned_cols=136 Identities=16% Similarity=0.142 Sum_probs=89.3
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCC-CcHHHHHHHHHHHHHhhhhc
Q 003055 571 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFA-TYVQAKRIVKFITDVGATVN 649 (852)
Q Consensus 571 ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P-~y~~aK~iIk~I~~va~~vn 649 (852)
++++....+++-|+..+|.... ++..+.+ +++ . .....+++.|.... .........+.+.++++..
T Consensus 189 ~~~~~~~il~~Grl~~~Kg~~~-Li~A~~~---l~~-~-------~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l- 255 (380)
T PRK15484 189 ISPDETVLLYAGRISPDKGILL-LMQAFEK---LAT-A-------HSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRI- 255 (380)
T ss_pred CCCCCeEEEEeccCccccCHHH-HHHHHHH---HHH-h-------CCCeEEEEEeCCccccccchhHHHHHHHHHHHhc-
Confidence 3456677889999999999887 6665544 332 0 11356777665332 2112223334444444322
Q ss_pred CCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEec
Q 003055 650 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 729 (852)
Q Consensus 650 ~Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~F 729 (852)
++ +|.|+..-.-+-...++.+||+-...|+ -.|.-|..-+-+|.-|++.|+|--|...|+.++. .|+|++
T Consensus 256 -----~~--~v~~~G~~~~~~l~~~~~~aDv~v~pS~-~~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~~--~~G~~l 325 (380)
T PRK15484 256 -----GD--RCIMLGGQPPEKMHNYYPLADLVVVPSQ-VEEAFCMVAVEAMAAGKPVLASTKGGITEFVLEG--ITGYHL 325 (380)
T ss_pred -----CC--cEEEeCCCCHHHHHHHHHhCCEEEeCCC-CccccccHHHHHHHcCCCEEEeCCCCcHhhcccC--CceEEE
Confidence 12 6888876555556678899999987554 2388888889999999999999989988877653 677744
No 42
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.82 E-value=0.09 Score=62.43 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=89.5
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003055 572 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 651 (852)
Q Consensus 572 dpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 651 (852)
.++..+.+++=||++.|.+.. ++..+.++. ++ .....+++.|.. | .-..+-+++.+.+
T Consensus 395 ~~~~~vIg~VgRl~~~Kg~~~-LI~A~a~ll--k~---------~pdirLvIVGdG-~---~~eeLk~la~elg------ 452 (578)
T PRK15490 395 QDADTTIGGVFRFVGDKNPFA-WIDFAARYL--QH---------HPATRFVLVGDG-D---LRAEAQKRAEQLG------ 452 (578)
T ss_pred CCCCcEEEEEEEEehhcCHHH-HHHHHHHHH--hH---------CCCeEEEEEeCc-h---hHHHHHHHHHHcC------
Confidence 355567889999999999987 555444332 21 124578888853 2 1223434443332
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 003055 652 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 731 (852)
Q Consensus 652 p~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG~ 731 (852)
+.+ +|.|+.. .+-...++.++||....|. .|..|.+-+-+|.-|.+.|+|--|...|+.++. +|+|++..
T Consensus 453 --L~d--~V~FlG~--~~Dv~~~LaaADVfVlPS~--~EGfp~vlLEAMA~GlPVVATdvGG~~EiV~dG--~nG~LVp~ 522 (578)
T PRK15490 453 --ILE--RILFVGA--SRDVGYWLQKMNVFILFSR--YEGLPNVLIEAQMVGVPVISTPAGGSAECFIEG--VSGFILDD 522 (578)
T ss_pred --CCC--cEEECCC--hhhHHHHHHhCCEEEEccc--ccCccHHHHHHHHhCCCEEEeCCCCcHHHcccC--CcEEEECC
Confidence 233 6888864 3334457899999998775 699999999999999999999999999877654 88998864
No 43
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=95.76 E-value=0.13 Score=55.31 Aligned_cols=131 Identities=15% Similarity=0.072 Sum_probs=85.7
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003055 572 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 651 (852)
Q Consensus 572 dpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 651 (852)
.++....+++-|+.+.|.+.. ++..+..+.+- .+.. ....++++.|.. |. -+.+.+++.+.+
T Consensus 191 ~~~~~~i~~vGrl~~~Kg~~~-li~a~~~l~~~---~~~~----~~~~~l~i~G~g-~~---~~~~~~~~~~~~------ 252 (374)
T TIGR03088 191 ADESVVVGTVGRLQAVKDQPT-LVRAFALLVRQ---LPEG----AERLRLVIVGDG-PA---RGACEQMVRAAG------ 252 (374)
T ss_pred CCCCeEEEEEecCCcccCHHH-HHHHHHHHHHh---Cccc----ccceEEEEecCC-ch---HHHHHHHHHHcC------
Confidence 356788999999999999987 66665554221 1110 114688888852 21 134444444332
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 003055 652 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 730 (852)
Q Consensus 652 p~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG 730 (852)
+.+ .|.|+ .+ ..-...++.+||+-...|. .|+.|.+-+-+|..|.+.|+|--|...|+.++. .++++|.
T Consensus 253 --~~~--~v~~~-g~-~~~~~~~~~~adi~v~pS~--~Eg~~~~~lEAma~G~Pvv~s~~~g~~e~i~~~--~~g~~~~ 321 (374)
T TIGR03088 253 --LAH--LVWLP-GE-RDDVPALMQALDLFVLPSL--AEGISNTILEAMASGLPVIATAVGGNPELVQHG--VTGALVP 321 (374)
T ss_pred --Ccc--eEEEc-CC-cCCHHHHHHhcCEEEeccc--cccCchHHHHHHHcCCCEEEcCCCCcHHHhcCC--CceEEeC
Confidence 222 34444 33 2334566799999887665 699999999999999999999878777766542 5566664
No 44
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=95.70 E-value=0.036 Score=59.34 Aligned_cols=123 Identities=20% Similarity=0.106 Sum_probs=78.1
Q ss_pred ccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCC
Q 003055 576 MFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIG 655 (852)
Q Consensus 576 lfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~v~ 655 (852)
...+++-|+...|+... ++..+.++.+- . ....+++.|....... +-+++.. ..+.
T Consensus 205 ~~i~~vgrl~~~K~~~~-li~a~~~l~~~---~--------~~~~l~i~G~g~~~~~----~~~~~~~--------~~~~ 260 (372)
T cd04949 205 HKIITVARLAPEKQLDQ-LIKAFAKVVKQ---V--------PDATLDIYGYGDEEEK----LKELIEE--------LGLE 260 (372)
T ss_pred CeEEEEEccCcccCHHH-HHHHHHHHHHh---C--------CCcEEEEEEeCchHHH----HHHHHHH--------cCCc
Confidence 35678889999998877 66665554321 1 1356777776544322 2222211 1223
Q ss_pred CcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccc-ccccccccccccceEecc
Q 003055 656 DLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG-ANVEIRQEVGEENFFLFG 730 (852)
Q Consensus 656 ~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDG-anvEi~e~vg~eN~f~FG 730 (852)
+ .|.|.. |. +-...++..||+....|. .|+-|.+-+-+|..|++.|+|--| ...|+.+. .+|++++.
T Consensus 261 ~--~v~~~g-~~-~~~~~~~~~ad~~v~~S~--~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v~~--~~~G~lv~ 328 (372)
T cd04949 261 D--YVFLKG-YT-RDLDEVYQKAQLSLLTSQ--SEGFGLSLMEALSHGLPVISYDVNYGPSEIIED--GENGYLVP 328 (372)
T ss_pred c--eEEEcC-CC-CCHHHHHhhhhEEEeccc--ccccChHHHHHHhCCCCEEEecCCCCcHHHccc--CCCceEeC
Confidence 3 455554 53 344567788999999987 599999999999999999998544 34444432 25666654
No 45
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.68 E-value=0.033 Score=57.98 Aligned_cols=128 Identities=16% Similarity=0.103 Sum_probs=91.9
Q ss_pred CCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCc
Q 003055 573 PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 652 (852)
Q Consensus 573 pdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp 652 (852)
.+....+++-|+.++|+... ++..+.++. ...+++.|..-. ...+.+++...+
T Consensus 189 ~~~~~i~~~G~~~~~K~~~~-li~a~~~l~---------------~~~l~i~G~g~~----~~~~~~~~~~~~------- 241 (357)
T cd03795 189 AGRPFFLFVGRLVYYKGLDV-LLEAAAALP---------------DAPLVIVGEGPL----EAELEALAAALG------- 241 (357)
T ss_pred CCCcEEEEecccccccCHHH-HHHHHHhcc---------------CcEEEEEeCChh----HHHHHHHHHhcC-------
Confidence 45668889999999998877 665544322 246888886422 233334442221
Q ss_pred CCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 003055 653 EIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 731 (852)
Q Consensus 653 ~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG~ 731 (852)
... +|.|++..+=+-...++..||+-...|+...|..|.+-+-+|..|.+.|+|-.|..-|..+. .++|++++..
T Consensus 242 -~~~--~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~-~~~~g~~~~~ 316 (357)
T cd03795 242 -LLD--RVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL-HGVTGLVVPP 316 (357)
T ss_pred -Ccc--eEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh-CCCceEEeCC
Confidence 222 69999988765566788999999988877789999999999999999999987877775554 3478888754
No 46
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=95.55 E-value=0.17 Score=53.43 Aligned_cols=128 Identities=17% Similarity=0.169 Sum_probs=85.8
Q ss_pred cccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCC
Q 003055 575 AMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEI 654 (852)
Q Consensus 575 slfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~v 654 (852)
....+++=|+..+|.... ++..+.+ |++. .....++++|.- | .-..+-+++.+.+ +
T Consensus 188 ~~~i~~~G~~~~~K~~~~-li~a~~~---l~~~--------~~~~~l~ivG~g-~---~~~~~~~~~~~~~--------~ 243 (367)
T cd05844 188 PPRILFVGRFVEKKGPLL-LLEAFAR---LARR--------VPEVRLVIIGDG-P---LLAALEALARALG--------L 243 (367)
T ss_pred CcEEEEEEeeccccChHH-HHHHHHH---HHHh--------CCCeEEEEEeCc-h---HHHHHHHHHHHcC--------C
Confidence 346778889999998776 6555443 3320 124678888852 1 1123333443321 2
Q ss_pred CCcceEEEecCCChhhhhhhccccccccccCCC---c-cccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 003055 655 GDLLKVIFVPDYNVSVAELLIPASELSQHISTA---G-MEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 730 (852)
Q Consensus 655 ~~~lKVvFlenY~vslAe~lipa~Dvs~nis~a---g-~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG 730 (852)
.+ +|.|+....-.-...++.+||+-...|.. | .|+.|++-+-+|.=|++.|+|-.|.+.|+.++. .++++|.
T Consensus 244 ~~--~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~~--~~g~~~~ 319 (367)
T cd05844 244 GG--RVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVEDG--ETGLLVP 319 (367)
T ss_pred CC--eEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchhheecC--CeeEEEC
Confidence 23 68898887666666788999997765543 2 689999999999999999999888887766433 6777774
No 47
>PLN02949 transferase, transferring glycosyl groups
Probab=95.40 E-value=0.19 Score=58.01 Aligned_cols=135 Identities=15% Similarity=0.124 Sum_probs=87.0
Q ss_pred cccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEecc-CCCCcHH-HHHHHHHHHHHhhhhcCCc
Q 003055 575 AMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGK-AFATYVQ-AKRIVKFITDVGATVNHDP 652 (852)
Q Consensus 575 slfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGK-A~P~y~~-aK~iIk~I~~va~~vn~Dp 652 (852)
..+.+++=||...|+..+ ++..+.++.+-. . .. ..+..++++|. ..+.+.. -+++-+++.+.
T Consensus 268 ~~~il~vGR~~~~Kg~~l-lI~A~~~l~~~~--~-~~----~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l-------- 331 (463)
T PLN02949 268 PPYIISVAQFRPEKAHAL-QLEAFALALEKL--D-AD----VPRPKLQFVGSCRNKEDEERLQKLKDRAKEL-------- 331 (463)
T ss_pred CCEEEEEEeeeccCCHHH-HHHHHHHHHHhc--c-cc----CCCcEEEEEeCCCCcccHHHHHHHHHHHHHc--------
Confidence 345667779999999999 888777764321 1 00 11234555554 3444432 23444444332
Q ss_pred CCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccc-ccccccc-cccccceEec
Q 003055 653 EIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG-ANVEIRQ-EVGEENFFLF 729 (852)
Q Consensus 653 ~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDG-anvEi~e-~vg~eN~f~F 729 (852)
.+.+ +|.|+.+-.-+--..++..||+-.+.|. .|.=|.+-+-+|.-|++.|++--| -..||.. +.+.+++|++
T Consensus 332 ~L~~--~V~f~g~v~~~el~~ll~~a~~~v~~s~--~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~ 406 (463)
T PLN02949 332 GLDG--DVEFHKNVSYRDLVRLLGGAVAGLHSMI--DEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLA 406 (463)
T ss_pred CCCC--cEEEeCCCCHHHHHHHHHhCcEEEeCCc--cCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccC
Confidence 2344 6999988665656667889999997664 699999999999999999998654 3446643 3334566665
No 48
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=95.33 E-value=0.062 Score=56.21 Aligned_cols=133 Identities=19% Similarity=0.187 Sum_probs=94.9
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003055 571 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 650 (852)
Q Consensus 571 ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 650 (852)
.+++....+++-|+...|.+.. ++..+.. +++ . ..+.++++.|...+.....+.+.+++.+.+
T Consensus 181 ~~~~~~~i~~~Gr~~~~Kg~~~-li~~~~~---l~~-~-------~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~----- 243 (355)
T cd03819 181 LPKGKPVILLPGRLTRWKGQEV-FIEALAR---LKK-D-------DPDVHLLIVGDAQGRRFYYAELLELIKRLG----- 243 (355)
T ss_pred CCCCceEEEEeeccccccCHHH-HHHHHHH---HHh-c-------CCCeEEEEEECCcccchHHHHHHHHHHHcC-----
Confidence 4567778899999999999887 6655544 432 1 126789999987766655566666554432
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 003055 651 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 730 (852)
Q Consensus 651 Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG 730 (852)
+.+ +|.|+.. .+--..++.+||+-...|. ..|..|++-+-+|.-|.+.|+|-.|...|+.++. .+++++-
T Consensus 244 ---~~~--~v~~~g~--~~~~~~~l~~ad~~i~ps~-~~e~~~~~l~EA~a~G~PvI~~~~~~~~e~i~~~--~~g~~~~ 313 (355)
T cd03819 244 ---LQD--RVTFVGH--CSDMPAAYALADIVVSAST-EPEAFGRTAVEAQAMGRPVIASDHGGARETVRPG--ETGLLVP 313 (355)
T ss_pred ---Ccc--eEEEcCC--cccHHHHHHhCCEEEecCC-CCCCCchHHHHHHhcCCCEEEcCCCCcHHHHhCC--CceEEeC
Confidence 222 5777766 3333466788999887663 3689999999999999999999888888877553 4777774
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=95.29 E-value=0.14 Score=52.43 Aligned_cols=129 Identities=12% Similarity=0.136 Sum_probs=84.6
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003055 572 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 651 (852)
Q Consensus 572 dpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 651 (852)
+.+.+..+++-|+..+|...+ ++..+. ++++ . .+.++++.|...... .+.+++...
T Consensus 217 ~~~~~~i~~~G~~~~~k~~~~-l~~~~~---~l~~-~--------~~~~l~i~G~~~~~~----~~~~~~~~~------- 272 (394)
T cd03794 217 LDDKFVVLYAGNIGRAQGLDT-LLEAAA---LLKD-R--------PDIRFLIVGDGPEKE----ELKELAKAL------- 272 (394)
T ss_pred CCCcEEEEEecCcccccCHHH-HHHHHH---HHhh-c--------CCeEEEEeCCcccHH----HHHHHHHHc-------
Confidence 456788899999999998777 665544 3432 1 156788888644322 222222111
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCcc---ccCCCccchhhcccceEeeecccccccccccccccceEe
Q 003055 652 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGM---EASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFL 728 (852)
Q Consensus 652 p~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~---EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~ 728 (852)
... .|.|++..+-+-...++..||+-...+.... .++++.-+-++.-|++.|+|-.|..-|+..+. .++++
T Consensus 273 -~~~---~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~--~~g~~ 346 (394)
T cd03794 273 -GLD---NVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEEA--GAGLV 346 (394)
T ss_pred -CCC---cEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhhccC--CcceE
Confidence 111 5999986665666678899999988776553 33344457899999999999888887766443 55555
Q ss_pred cc
Q 003055 729 FG 730 (852)
Q Consensus 729 FG 730 (852)
|.
T Consensus 347 ~~ 348 (394)
T cd03794 347 VP 348 (394)
T ss_pred eC
Confidence 54
No 50
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=94.95 E-value=0.045 Score=55.11 Aligned_cols=130 Identities=17% Similarity=0.102 Sum_probs=88.3
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003055 571 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 650 (852)
Q Consensus 571 ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 650 (852)
.+++....+++-|+.+.|+..+ ++..+. ++++ . ..+.++++.|.....+. +.+++....
T Consensus 185 ~~~~~~~i~~~g~~~~~k~~~~-~i~~~~---~l~~-~-------~~~~~l~i~G~~~~~~~----~~~~~~~~~----- 243 (353)
T cd03811 185 IPPDGPVILAVGRLSPQKGFDT-LIRAFA---LLRK-E-------GPDARLVILGDGPLREE----LEALAKELG----- 243 (353)
T ss_pred CCCCceEEEEEecchhhcChHH-HHHHHH---Hhhh-c-------CCCceEEEEcCCccHHH----HHHHHHhcC-----
Confidence 3556778899999999998776 555443 3432 1 12567888886543322 223333222
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 003055 651 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 730 (852)
Q Consensus 651 Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG 730 (852)
..+ +|.|+.. ++-...++..||+....|.. |..|++-+-+|.-|++.|+|-.|..-|+.++. .+++++.
T Consensus 244 ---~~~--~v~~~g~--~~~~~~~~~~~d~~i~ps~~--e~~~~~~~Ea~~~G~PvI~~~~~~~~e~i~~~--~~g~~~~ 312 (353)
T cd03811 244 ---LAD--RVHFLGF--QSNPYPYLKAADLFVLSSRY--EGFPNVLLEAMALGTPVVATDCPGPREILEDG--ENGLLVP 312 (353)
T ss_pred ---CCc--cEEEecc--cCCHHHHHHhCCEEEeCccc--CCCCcHHHHHHHhCCCEEEcCCCChHHHhcCC--CceEEEC
Confidence 122 4666665 33345688999999887654 99999999999999999999889887766543 6888886
Q ss_pred cc
Q 003055 731 AR 732 (852)
Q Consensus 731 ~~ 732 (852)
..
T Consensus 313 ~~ 314 (353)
T cd03811 313 VG 314 (353)
T ss_pred CC
Confidence 54
No 51
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=94.94 E-value=0.055 Score=56.31 Aligned_cols=131 Identities=18% Similarity=0.100 Sum_probs=90.9
Q ss_pred CCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCc
Q 003055 573 PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 652 (852)
Q Consensus 573 pdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp 652 (852)
.+....+++-|+..+|...+ ++..+.++ ++ . ..+.++++.|...+.. .+-+++....
T Consensus 177 ~~~~~i~~~g~~~~~k~~~~-l~~~~~~l---~~-~-------~~~~~l~i~G~~~~~~----~~~~~~~~~~------- 233 (355)
T cd03799 177 GEPLRILSVGRLVEKKGLDY-LLEALALL---KD-R-------GIDFRLDIVGDGPLRD----ELEALIAELG------- 233 (355)
T ss_pred CCCeEEEEEeeeccccCHHH-HHHHHHHH---hh-c-------CCCeEEEEEECCccHH----HHHHHHHHcC-------
Confidence 45567788899999998777 77766553 32 1 1256788888654432 2333333221
Q ss_pred CCCCcceEEEecCCChhhhhhhccccccccccCCC----ccccCCCccchhhcccceEeeecccccccccccccccceEe
Q 003055 653 EIGDLLKVIFVPDYNVSVAELLIPASELSQHISTA----GMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFL 728 (852)
Q Consensus 653 ~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~a----g~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~ 728 (852)
..+ .|.|.....-.-...++..||+-...|.. ..|+.|++-+-+|.-|++.|+|-.|+.-|+.+.. .|+++
T Consensus 234 -~~~--~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~~~--~~g~~ 308 (355)
T cd03799 234 -LED--RVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPELVEDG--ETGLL 308 (355)
T ss_pred -CCC--eEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcchhhhCC--CceEE
Confidence 122 58888877666677788999999887665 2488899999999999999999888887776543 57787
Q ss_pred ccc
Q 003055 729 FGA 731 (852)
Q Consensus 729 FG~ 731 (852)
+..
T Consensus 309 ~~~ 311 (355)
T cd03799 309 VPP 311 (355)
T ss_pred eCC
Confidence 754
No 52
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=94.89 E-value=0.11 Score=53.19 Aligned_cols=132 Identities=17% Similarity=0.171 Sum_probs=92.4
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003055 571 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 650 (852)
Q Consensus 571 ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 650 (852)
++++....+++-|+..+|+... ++..+.+ +++ . ....++++.|... ..+.+.+++....
T Consensus 198 ~~~~~~~i~~~G~~~~~k~~~~-l~~~~~~---~~~-~-------~~~~~l~i~G~~~----~~~~~~~~~~~~~----- 256 (374)
T cd03817 198 IPEDEPVLLYVGRLAKEKNIDF-LIRAFAR---LLK-E-------EPDVKLVIVGDGP----EREELEELARELG----- 256 (374)
T ss_pred CCCCCeEEEEEeeeecccCHHH-HHHHHHH---HHH-h-------CCCeEEEEEeCCc----hHHHHHHHHHHcC-----
Confidence 3456778899999999998766 5555443 432 1 1246788888642 2233444443222
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 003055 651 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 730 (852)
Q Consensus 651 Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG 730 (852)
..+ +|.|++..+=+-...++..||+-...|. .|..|++-+-+|.-|++.|+|-.|+.-|+.+.. ++++++.
T Consensus 257 ---~~~--~v~~~g~~~~~~~~~~~~~ad~~l~~s~--~e~~~~~~~Ea~~~g~PvI~~~~~~~~~~i~~~--~~g~~~~ 327 (374)
T cd03817 257 ---LAD--RVIFTGFVPREELPDYYKAADLFVFAST--TETQGLVLLEAMAAGLPVVAVDAPGLPDLVADG--ENGFLFP 327 (374)
T ss_pred ---CCC--cEEEeccCChHHHHHHHHHcCEEEeccc--ccCcChHHHHHHHcCCcEEEeCCCChhhheecC--ceeEEeC
Confidence 122 6889988776667778889999887664 578888889999999999999999988877654 6888886
Q ss_pred cc
Q 003055 731 AR 732 (852)
Q Consensus 731 ~~ 732 (852)
..
T Consensus 328 ~~ 329 (374)
T cd03817 328 PG 329 (374)
T ss_pred CC
Confidence 54
No 53
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=94.57 E-value=0.061 Score=57.25 Aligned_cols=114 Identities=17% Similarity=0.181 Sum_probs=82.8
Q ss_pred cccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCC
Q 003055 577 FDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGD 656 (852)
Q Consensus 577 fdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~v~~ 656 (852)
+.+++-|+..+|++.. ++..+.+ + |..+++.|.-.. .+.+ +. . ..+
T Consensus 197 ~il~~G~~~~~K~~~~-li~a~~~---~-------------~~~l~ivG~g~~----~~~l-~~--~----------~~~ 242 (351)
T cd03804 197 YYLSVGRLVPYKRIDL-AIEAFNK---L-------------GKRLVVIGDGPE----LDRL-RA--K----------AGP 242 (351)
T ss_pred EEEEEEcCccccChHH-HHHHHHH---C-------------CCcEEEEECChh----HHHH-Hh--h----------cCC
Confidence 4678999999999887 6554422 1 345777775321 1222 21 1 112
Q ss_pred cceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 003055 657 LLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 731 (852)
Q Consensus 657 ~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG~ 731 (852)
+|.|++.-+-+-...++.+||+....|+ |..|++.+-+|..|++.|+|-.|...|+.++. ++++++..
T Consensus 243 --~V~~~g~~~~~~~~~~~~~ad~~v~ps~---e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~~--~~G~~~~~ 310 (351)
T cd03804 243 --NVTFLGRVSDEELRDLYARARAFLFPAE---EDFGIVPVEAMASGTPVIAYGKGGALETVIDG--VTGILFEE 310 (351)
T ss_pred --CEEEecCCCHHHHHHHHHhCCEEEECCc---CCCCchHHHHHHcCCCEEEeCCCCCcceeeCC--CCEEEeCC
Confidence 6999998766667789999999997765 99999999999999999999999988876543 67887753
No 54
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=94.49 E-value=0.36 Score=50.55 Aligned_cols=124 Identities=12% Similarity=-0.022 Sum_probs=81.8
Q ss_pred CCCCcccccccccccc--cccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 003055 571 VSPDAMFDIQVKRIHE--YKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATV 648 (852)
Q Consensus 571 ldpdslfdvq~kR~he--YKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~v 648 (852)
++++.....+..|... +|+... ++..+.. ++. . . ..+.++++.|...+....
T Consensus 187 ~~~~~~~i~~~~~~~~~~~K~~~~-ll~a~~~---l~~-~--~----~~~~~~~i~G~~~~~~~~--------------- 240 (365)
T cd03825 187 LPADKKIILFGAVGGTDPRKGFDE-LIEALKR---LAE-R--W----KDDIELVVFGASDPEIPP--------------- 240 (365)
T ss_pred CCCCCeEEEEEecCCCccccCHHH-HHHHHHH---hhh-c--c----CCCeEEEEeCCCchhhhc---------------
Confidence 3455555566666655 777766 5555443 332 0 0 125688888876543221
Q ss_pred cCCcCCCCcceEEEecCCC-hhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceE
Q 003055 649 NHDPEIGDLLKVIFVPDYN-VSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFF 727 (852)
Q Consensus 649 n~Dp~v~~~lKVvFlenY~-vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f 727 (852)
...+ +|.|+.... -.....++..||+-...|. .|+.|.+-+-+|..|++.|++-.|...|+.... ++++
T Consensus 241 ----~~~~--~v~~~g~~~~~~~~~~~~~~ad~~l~ps~--~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~--~~g~ 310 (365)
T cd03825 241 ----DLPF--PVHYLGSLNDDESLALIYSAADVFVVPSL--QENFPNTAIEALACGTPVVAFDVGGIPDIVDHG--VTGY 310 (365)
T ss_pred ----cCCC--ceEecCCcCCHHHHHHHHHhCCEEEeccc--cccccHHHHHHHhcCCCEEEecCCCChhheeCC--CceE
Confidence 1122 577877765 4455567889999988665 699999999999999999999888888766432 4565
Q ss_pred ecc
Q 003055 728 LFG 730 (852)
Q Consensus 728 ~FG 730 (852)
++.
T Consensus 311 ~~~ 313 (365)
T cd03825 311 LAK 313 (365)
T ss_pred EeC
Confidence 543
No 55
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=94.05 E-value=0.55 Score=54.82 Aligned_cols=122 Identities=20% Similarity=0.130 Sum_probs=83.2
Q ss_pred ccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCC
Q 003055 576 MFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIG 655 (852)
Q Consensus 576 lfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~v~ 655 (852)
...+++-|+.+.|+... ++..+.++.+ . ....++++.|... . -..+-+++.... +.
T Consensus 320 ~~il~vGrl~~~Kg~~~-li~A~~~l~~--~---------~p~~~l~i~G~G~---~-~~~l~~~i~~~~--------l~ 375 (500)
T TIGR02918 320 FSIITASRLAKEKHIDW-LVKAVVKAKK--S---------VPELTFDIYGEGG---E-KQKLQKIINENQ--------AQ 375 (500)
T ss_pred eEEEEEeccccccCHHH-HHHHHHHHHh--h---------CCCeEEEEEECch---h-HHHHHHHHHHcC--------CC
Confidence 46788999999999887 6666554421 1 1245666666421 1 123334443321 23
Q ss_pred CcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccc-ccccccccccccceEecc
Q 003055 656 DLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG-ANVEIRQEVGEENFFLFG 730 (852)
Q Consensus 656 ~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDG-anvEi~e~vg~eN~f~FG 730 (852)
+ +|.|+. + +.+++ +...||+....|+ .|+-|.+-|-||..|++.|+|--| ...|+.+.. +|++++.
T Consensus 376 ~--~V~f~G-~-~~~~~-~~~~adv~v~pS~--~Egfgl~~lEAma~G~PVI~~dv~~G~~eiI~~g--~nG~lv~ 442 (500)
T TIGR02918 376 D--YIHLKG-H-RNLSE-VYKDYELYLSAST--SEGFGLTLMEAVGSGLGMIGFDVNYGNPTFIEDN--KNGYLIP 442 (500)
T ss_pred C--eEEEcC-C-CCHHH-HHHhCCEEEEcCc--cccccHHHHHHHHhCCCEEEecCCCCCHHHccCC--CCEEEEe
Confidence 3 677777 4 46654 5789999998886 799999999999999999999644 677777654 7999885
No 56
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=93.95 E-value=0.21 Score=56.55 Aligned_cols=124 Identities=14% Similarity=0.110 Sum_probs=82.3
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003055 572 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 651 (852)
Q Consensus 572 dpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 651 (852)
+++..+.+++-|+..+|...+ ++..+ +. . ....++++|. .|.. ..+-+++ + .
T Consensus 260 ~~~~~~i~~vGrl~~~K~~~~-li~a~------~~-~--------~~~~l~ivG~-G~~~---~~l~~~~----~---~- 311 (465)
T PLN02871 260 EPEKPLIVYVGRLGAEKNLDF-LKRVM------ER-L--------PGARLAFVGD-GPYR---EELEKMF----A---G- 311 (465)
T ss_pred CCCCeEEEEeCCCchhhhHHH-HHHHH------Hh-C--------CCcEEEEEeC-ChHH---HHHHHHh----c---c-
Confidence 356778899999999998666 43322 11 1 1346888885 2221 2222222 1 1
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccccccccccc-ccccceEecc
Q 003055 652 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQE-VGEENFFLFG 730 (852)
Q Consensus 652 p~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~-vg~eN~f~FG 730 (852)
.+|.|+.--.=+-...++.+||+-..-|. .|..|..-+-+|.-|.+.|+|-.|...|+.++ ...+|+++|.
T Consensus 312 ------~~V~f~G~v~~~ev~~~~~~aDv~V~pS~--~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~lv~ 383 (465)
T PLN02871 312 ------TPTVFTGMLQGDELSQAYASGDVFVMPSE--SETLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLYT 383 (465)
T ss_pred ------CCeEEeccCCHHHHHHHHHHCCEEEECCc--ccccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEEeC
Confidence 15777654222445567899999987664 68889889999999999999988888887754 1237888886
Q ss_pred c
Q 003055 731 A 731 (852)
Q Consensus 731 ~ 731 (852)
.
T Consensus 384 ~ 384 (465)
T PLN02871 384 P 384 (465)
T ss_pred C
Confidence 4
No 57
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=93.87 E-value=0.74 Score=47.53 Aligned_cols=121 Identities=17% Similarity=0.133 Sum_probs=81.8
Q ss_pred CCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCc
Q 003055 573 PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 652 (852)
Q Consensus 573 pdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp 652 (852)
++....+++-|+..+|.... ++..+. ++++ . .+..+++.|.. |.. .-++ .
T Consensus 195 ~~~~~i~~~G~~~~~k~~~~-~i~~~~---~l~~-~--------~~~~l~i~G~~-~~~----~~~~------~------ 244 (364)
T cd03814 195 PDRPVLLYVGRLAPEKNLEA-LLDADL---PLRR-R--------PPVRLVIVGDG-PAR----ARLE------A------ 244 (364)
T ss_pred CCCeEEEEEeccccccCHHH-HHHHHH---Hhhh-c--------CCceEEEEeCC-chH----HHHh------c------
Confidence 45567788899999888766 554443 3432 1 14578888852 211 1112 1
Q ss_pred CCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 003055 653 EIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 730 (852)
Q Consensus 653 ~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG 730 (852)
..+ +|.|+.-....-...++..||+-...+. .|..|.+-+-+|.-|++.|++--|...|+.++. .+++++.
T Consensus 245 -~~~--~v~~~g~~~~~~~~~~~~~~d~~l~~s~--~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i~~~--~~g~~~~ 315 (364)
T cd03814 245 -RYP--NVHFLGFLDGEELAAAYASADVFVFPSR--TETFGLVVLEAMASGLPVVAPDAGGPADIVTDG--ENGLLVE 315 (364)
T ss_pred -cCC--cEEEEeccCHHHHHHHHHhCCEEEECcc--cccCCcHHHHHHHcCCCEEEcCCCCchhhhcCC--cceEEcC
Confidence 112 6888887667777788999999886654 578888899999999999999888877766442 4666553
No 58
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=93.59 E-value=0.29 Score=51.34 Aligned_cols=120 Identities=17% Similarity=0.082 Sum_probs=83.0
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003055 571 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 650 (852)
Q Consensus 571 ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 650 (852)
..++....+++-|+..+|...+ ++..+.+ +++ . ....++++.|.... . ..+-+++.+.
T Consensus 188 ~~~~~~~i~~vGr~~~~Kg~~~-li~a~~~---l~~-~-------~~~~~l~ivG~g~~-~---~~~~~~~~~~------ 245 (358)
T cd03812 188 ILEDKFVIGHVGRFSEQKNHEF-LIEIFAE---LLK-K-------NPNAKLLLVGDGEL-E---EEIKKKVKEL------ 245 (358)
T ss_pred CCCCCEEEEEEeccccccChHH-HHHHHHH---HHH-h-------CCCeEEEEEeCCch-H---HHHHHHHHhc------
Confidence 4567888999999999999887 6655544 432 1 12467888886432 1 2222222211
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccccccccccc
Q 003055 651 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQE 720 (852)
Q Consensus 651 Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~ 720 (852)
.+.+ +|.|+.- .+-...++..||+-.+.|+ .|..|.+-+-+|.-|++.|+|--|..-|+.+.
T Consensus 246 --~~~~--~v~~~g~--~~~~~~~~~~adi~v~ps~--~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~~ 307 (358)
T cd03812 246 --GLED--KVIFLGV--RNDVPELLQAMDVFLFPSL--YEGLPLVLIEAQASGLPCILSDTITKEVDLTD 307 (358)
T ss_pred --CCCC--cEEEecc--cCCHHHHHHhcCEEEeccc--ccCCCHHHHHHHHhCCCEEEEcCCchhhhhcc
Confidence 1223 5777764 4445567899999998886 49999999999999999999988887776644
No 59
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=93.48 E-value=0.72 Score=46.60 Aligned_cols=125 Identities=14% Similarity=0.050 Sum_probs=77.6
Q ss_pred CcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcC
Q 003055 574 DAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPE 653 (852)
Q Consensus 574 dslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~ 653 (852)
+....+++-|+...|.... ++..+.+ +++.. ...++++.|....... +-+++...+
T Consensus 177 ~~~~i~~~g~~~~~K~~~~-l~~~~~~---l~~~~--------~~~~l~i~G~~~~~~~----~~~~~~~~~-------- 232 (348)
T cd03820 177 KSKRILAVGRLVPQKGFDL-LIEAWAK---IAKKH--------PDWKLRIVGDGPEREA----LEALIKELG-------- 232 (348)
T ss_pred CCcEEEEEEeeccccCHHH-HHHHHHH---HHhcC--------CCeEEEEEeCCCCHHH----HHHHHHHcC--------
Confidence 3456778889999998877 6655544 33211 2457888886543322 222222221
Q ss_pred CCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccc-cccccccccceEecc
Q 003055 654 IGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANV-EIRQEVGEENFFLFG 730 (852)
Q Consensus 654 v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanv-Ei~e~vg~eN~f~FG 730 (852)
+.+ +|.|... .+-...++..||+-...|+. |..|++-+-+|..|++.|+|-.|... |+.+. .+++++|-
T Consensus 233 ~~~--~v~~~g~--~~~~~~~~~~ad~~i~ps~~--e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~~~~--~~~g~~~~ 302 (348)
T cd03820 233 LED--RVILLGF--TKNIEEYYAKASIFVLTSRF--EGFPMVLLEAMAFGLPVISFDCPTGPSEIIED--GVNGLLVP 302 (348)
T ss_pred CCC--eEEEcCC--cchHHHHHHhCCEEEeCccc--cccCHHHHHHHHcCCCEEEecCCCchHhhhcc--CcceEEeC
Confidence 222 5666665 45566778889998876654 88999999999999999998544433 33322 14666664
No 60
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=93.32 E-value=0.52 Score=53.12 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=90.3
Q ss_pred CcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCc-H-HHHHHHHHHHHHhhhhcCC
Q 003055 574 DAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY-V-QAKRIVKFITDVGATVNHD 651 (852)
Q Consensus 574 dslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y-~-~aK~iIk~I~~va~~vn~D 651 (852)
+..+.+++=||...|+..+ ++..+..+.+- .|... ..+.+++++|.....+ . ..+.+-+++.+.
T Consensus 236 ~~~~il~vgr~~~~K~~~~-li~A~~~l~~~---~~~~~---~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l------- 301 (419)
T cd03806 236 RENQILSIAQFRPEKNHPL-QLRAFAKLLKR---LPEEI---KEKIKLVLIGSCRNEDDEKRVEDLKLLAKEL------- 301 (419)
T ss_pred CCcEEEEEEeecCCCCHHH-HHHHHHHHHHh---Ccccc---cCceEEEEEcCCCCcccHHHHHHHHHHHHHh-------
Confidence 3457888889999999988 77776655432 11100 0135666666643333 2 223333333332
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccc-ccccccccc-cccceEec
Q 003055 652 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG-ANVEIRQEV-GEENFFLF 729 (852)
Q Consensus 652 p~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDG-anvEi~e~v-g~eN~f~F 729 (852)
.+.+ +|.|+.+-.-+--..++..||+..+.|.. |.=|-+-.-+|.-|++.|++-.| ..-||.+.. ..+++|++
T Consensus 302 -~l~~--~V~f~g~v~~~~l~~~l~~adv~v~~s~~--E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~ 376 (419)
T cd03806 302 -GLED--KVEFVVNAPFEELLEELSTASIGLHTMWN--EHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLA 376 (419)
T ss_pred -CCCC--eEEEecCCCHHHHHHHHHhCeEEEECCcc--CCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEe
Confidence 2334 79999876666667888999999987764 88899999999999999988654 445665411 24788887
Q ss_pred c
Q 003055 730 G 730 (852)
Q Consensus 730 G 730 (852)
.
T Consensus 377 ~ 377 (419)
T cd03806 377 S 377 (419)
T ss_pred C
Confidence 4
No 61
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.20 E-value=0.39 Score=58.37 Aligned_cols=128 Identities=17% Similarity=0.220 Sum_probs=89.3
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003055 572 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 651 (852)
Q Consensus 572 dpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 651 (852)
+.+.++.+++-|+.+.|.+.+ ++..+.++.+ + . ....+++.|.. | . -..+-+++.+.+
T Consensus 514 ~~~~~vIg~VGRL~~~KG~~~-LI~A~a~l~~--~-~--------p~~~LvIvG~G-~--~-~~~L~~l~~~lg------ 571 (694)
T PRK15179 514 SDARFTVGTVMRVDDNKRPFL-WVEAAQRFAA--S-H--------PKVRFIMVGGG-P--L-LESVREFAQRLG------ 571 (694)
T ss_pred CCCCeEEEEEEeCCccCCHHH-HHHHHHHHHH--H-C--------cCeEEEEEccC-c--c-hHHHHHHHHHcC------
Confidence 345778889999999999988 6665554422 1 1 13568888853 1 1 233444444332
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 003055 652 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 731 (852)
Q Consensus 652 p~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG~ 731 (852)
+.+ +|.|+. |.=. ...++.+||+....|+ .|..|.+=+-+|..|.+.|+|--|...|+.++. +|++++..
T Consensus 572 --L~~--~V~flG-~~~d-v~~ll~aaDv~VlpS~--~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~dg--~~GlLv~~ 641 (694)
T PRK15179 572 --MGE--RILFTG-LSRR-VGYWLTQFNAFLLLSR--FEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQEG--VTGLTLPA 641 (694)
T ss_pred --CCC--cEEEcC-Ccch-HHHHHHhcCEEEeccc--cccchHHHHHHHHcCCeEEEECCCChHHHccCC--CCEEEeCC
Confidence 333 566655 4323 4467899999998885 699999999999999999999888888877653 78999863
No 62
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=93.00 E-value=0.91 Score=47.65 Aligned_cols=120 Identities=14% Similarity=0.116 Sum_probs=75.7
Q ss_pred cccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCC
Q 003055 577 FDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGD 656 (852)
Q Consensus 577 fdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~v~~ 656 (852)
+.+++=|+.++|...+ ++..+.. +.. ...+++.|.........+.+.+. . ...+
T Consensus 195 ~i~~~G~~~~~Kg~~~-li~a~~~---l~~-----------~~~l~ivG~~~~~~~~~~~~~~~---~--------~~~~ 248 (363)
T cd04955 195 YYLLVGRIVPENNIDD-LIEAFSK---SNS-----------GKKLVIVGNADHNTPYGKLLKEK---A--------AADP 248 (363)
T ss_pred EEEEEecccccCCHHH-HHHHHHh---hcc-----------CceEEEEcCCCCcchHHHHHHHH---h--------CCCC
Confidence 4578899999999887 6554432 221 24688888775444433333321 1 1122
Q ss_pred cceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEec
Q 003055 657 LLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 729 (852)
Q Consensus 657 ~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~F 729 (852)
+|.|+.-..=+-...++..||+..-.|. ..|..|.+-+-+|.-|++.|+|-.|...|+.+. ++++|
T Consensus 249 --~V~~~g~~~~~~~~~~~~~ad~~v~ps~-~~e~~~~~~~EAma~G~PvI~s~~~~~~e~~~~----~g~~~ 314 (363)
T cd04955 249 --RIIFVGPIYDQELLELLRYAALFYLHGH-SVGGTNPSLLEAMAYGCPVLASDNPFNREVLGD----KAIYF 314 (363)
T ss_pred --cEEEccccChHHHHHHHHhCCEEEeCCc-cCCCCChHHHHHHHcCCCEEEecCCccceeecC----CeeEe
Confidence 5888775433333455566777654443 348888888999999999999988887776532 55555
No 63
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=92.81 E-value=0.35 Score=49.08 Aligned_cols=129 Identities=16% Similarity=0.103 Sum_probs=87.2
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003055 572 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 651 (852)
Q Consensus 572 dpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 651 (852)
+.+....+++-|+..+|.... ++..+.+ +.+ . ..+.++++.|...+. +.+.+++.+.
T Consensus 199 ~~~~~~i~~~g~~~~~k~~~~-li~~~~~---~~~-~-------~~~~~l~i~g~~~~~----~~~~~~~~~~------- 255 (377)
T cd03798 199 PEDKKVILFVGRLVPRKGIDY-LIEALAR---LLK-K-------RPDVHLVIVGDGPLR----EALEALAAEL------- 255 (377)
T ss_pred CCCceEEEEeccCccccCHHH-HHHHHHH---HHh-c-------CCCeEEEEEcCCcch----HHHHHHHHhc-------
Confidence 446678889999999887666 6555443 432 1 125688899975442 2233333211
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecc
Q 003055 652 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 730 (852)
Q Consensus 652 p~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG 730 (852)
...+ .|.|++..+=+-...++..||+....++. |+.|++-+-++.-|++.|++-.|+.-|+.++. .++++|-
T Consensus 256 -~~~~--~v~~~g~~~~~~~~~~~~~ad~~i~~~~~--~~~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~--~~g~~~~ 327 (377)
T cd03798 256 -GLED--RVTFLGAVPHEEVPAYYAAADVFVLPSLR--EGFGLVLLEAMACGLPVVATDVGGIPEIITDG--ENGLLVP 327 (377)
T ss_pred -CCcc--eEEEeCCCCHHHHHHHHHhcCeeecchhh--ccCChHHHHHHhcCCCEEEecCCChHHHhcCC--cceeEEC
Confidence 2222 57777766555556778889999887766 99999999999999999999888887766443 3445553
No 64
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=92.15 E-value=0.64 Score=47.76 Aligned_cols=126 Identities=13% Similarity=0.016 Sum_probs=86.9
Q ss_pred CCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCc
Q 003055 573 PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 652 (852)
Q Consensus 573 pdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp 652 (852)
.+....+++-|+..+|+..+ ++..+..+.+ ....+++.|.....+..-+.. +
T Consensus 189 ~~~~~i~~~G~~~~~k~~~~-li~~~~~l~~-------------~~~~l~i~G~~~~~~~~~~~~-------~------- 240 (359)
T cd03823 189 GGRLRFGFIGQLTPHKGVDL-LLEAFKRLPR-------------GDIELVIVGNGLELEEESYEL-------E------- 240 (359)
T ss_pred CCceEEEEEecCccccCHHH-HHHHHHHHHh-------------cCcEEEEEcCchhhhHHHHhh-------c-------
Confidence 34566778889999998877 6655544322 134677888765554433222 1
Q ss_pred CCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecccc
Q 003055 653 EIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGAR 732 (852)
Q Consensus 653 ~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG~~ 732 (852)
..+ +|.|+..+.-.....++..||+....| ...|..|.+-+-+|.-|.+.|+|--|..-|+.+.. .++++|...
T Consensus 241 -~~~--~v~~~g~~~~~~~~~~~~~ad~~i~ps-~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~--~~g~~~~~~ 314 (359)
T cd03823 241 -GDP--RVEFLGAYPQEEIDDFYAEIDVLVVPS-IWPENFPLVIREALAAGVPVIASDIGGMAELVRDG--VNGLLFPPG 314 (359)
T ss_pred -CCC--eEEEeCCCCHHHHHHHHHhCCEEEEcC-cccCCCChHHHHHHHCCCCEEECCCCCHHHHhcCC--CcEEEECCC
Confidence 112 688888887777778899999988654 33578888888899999999999777777665432 467777553
No 65
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=90.96 E-value=0.7 Score=48.02 Aligned_cols=122 Identities=13% Similarity=0.047 Sum_probs=82.3
Q ss_pred cccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCC
Q 003055 577 FDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGD 656 (852)
Q Consensus 577 fdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~v~~ 656 (852)
+.+++=|+...|++.+ ++... +. ....+++.|.........+. +..... +.+
T Consensus 173 ~i~~~Gr~~~~Kg~~~-li~~~------~~----------~~~~l~i~G~~~~~~~~~~~----~~~~~~-------~~~ 224 (335)
T cd03802 173 YLLFLGRISPEKGPHL-AIRAA------RR----------AGIPLKLAGPVSDPDYFYRE----IAPELL-------DGP 224 (335)
T ss_pred EEEEEEeeccccCHHH-HHHHH------Hh----------cCCeEEEEeCCCCHHHHHHH----HHHhcc-------cCC
Confidence 5678889999999987 55432 11 12467788876443332222 111110 223
Q ss_pred cceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 003055 657 LLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 731 (852)
Q Consensus 657 ~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG~ 731 (852)
+|.|+..-+=.-...++.++|+....|+ ..|.+|.+-+-+|--|++.|+|--|...|+.+.. .|++++..
T Consensus 225 --~v~~~G~~~~~~~~~~~~~~d~~v~ps~-~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~~--~~g~l~~~ 294 (335)
T cd03802 225 --DIEYLGEVGGAEKAELLGNARALLFPIL-WEEPFGLVMIEAMACGTPVIAFRRGAVPEVVEDG--VTGFLVDS 294 (335)
T ss_pred --cEEEeCCCCHHHHHHHHHhCcEEEeCCc-ccCCcchHHHHHHhcCCCEEEeCCCCchhheeCC--CcEEEeCC
Confidence 6888876443334567899999987654 5699999999999999999999888888877543 58888754
No 66
>PRK10307 putative glycosyl transferase; Provisional
Probab=90.16 E-value=2.5 Score=46.68 Aligned_cols=126 Identities=11% Similarity=0.121 Sum_probs=78.5
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003055 571 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 650 (852)
Q Consensus 571 ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 650 (852)
++++....+++-|+.++|.... ++..+. ++++ . .+..+++.|.- |. -..+.+++...+
T Consensus 225 ~~~~~~~i~~~G~l~~~kg~~~-li~a~~---~l~~-~--------~~~~l~ivG~g-~~---~~~l~~~~~~~~----- 282 (412)
T PRK10307 225 LPDGKKIVLYSGNIGEKQGLEL-VIDAAR---RLRD-R--------PDLIFVICGQG-GG---KARLEKMAQCRG----- 282 (412)
T ss_pred CCCCCEEEEEcCccccccCHHH-HHHHHH---Hhcc-C--------CCeEEEEECCC-hh---HHHHHHHHHHcC-----
Confidence 4566778889999999997766 655543 3432 1 13678888842 21 123333443221
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCc-c---chhhcccceEeeeccccc--cccccccccc
Q 003055 651 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTS-N---MKFAMNGCILIGTLDGAN--VEIRQEVGEE 724 (852)
Q Consensus 651 Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTs-n---MKfamNG~l~lgtlDGan--vEi~e~vg~e 724 (852)
+. +|.|+....-+-...++.+||+-...++. |+.|.+ . .-+|..|++.|+|-.|-. -|+.+ +
T Consensus 283 ---l~---~v~f~G~~~~~~~~~~~~~aDi~v~ps~~--e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~----~ 350 (412)
T PRK10307 283 ---LP---NVHFLPLQPYDRLPALLKMADCHLLPQKA--GAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE----G 350 (412)
T ss_pred ---CC---ceEEeCCCCHHHHHHHHHhcCEeEEeecc--CcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh----C
Confidence 11 48898765666777788999998876653 554432 2 347889999999965432 23332 4
Q ss_pred ceEecc
Q 003055 725 NFFLFG 730 (852)
Q Consensus 725 N~f~FG 730 (852)
|++++.
T Consensus 351 ~G~~~~ 356 (412)
T PRK10307 351 IGVCVE 356 (412)
T ss_pred CcEEeC
Confidence 677764
No 67
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=89.81 E-value=2.7 Score=47.07 Aligned_cols=129 Identities=16% Similarity=0.084 Sum_probs=79.8
Q ss_pred cccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCC
Q 003055 575 AMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEI 654 (852)
Q Consensus 575 slfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~v 654 (852)
....+++-|+...|+..+ ++..+.++.+- .|. ....+++.|... .-..+.+++... ..
T Consensus 230 ~~~il~~Grl~~~Kg~~~-li~a~~~l~~~---~p~------~~l~~~iiG~g~----~~~~l~~~~~~~--------~~ 287 (407)
T cd04946 230 TLRIVSCSYLVPVKRVDL-IIKALAALAKA---RPS------IKIKWTHIGGGP----LEDTLKELAESK--------PE 287 (407)
T ss_pred CEEEEEeeccccccCHHH-HHHHHHHHHHh---CCC------ceEEEEEEeCch----HHHHHHHHHHhc--------CC
Confidence 456788999999999877 66655554321 111 123455555422 122333343311 11
Q ss_pred CCcceEEEecCCC-hhhhhhhcc-ccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 003055 655 GDLLKVIFVPDYN-VSVAELLIP-ASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 731 (852)
Q Consensus 655 ~~~lKVvFlenY~-vslAe~lip-a~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG~ 731 (852)
.+ +|.|+.-.. -.+.+.+-. .+|+--+.| ..|+-|.+-|-+|.-|.+.|+|--|...|+.++. +|++++-.
T Consensus 288 ~~--~V~f~G~v~~~e~~~~~~~~~~~v~v~~S--~~Eg~p~~llEAma~G~PVIas~vgg~~e~i~~~--~~G~l~~~ 360 (407)
T cd04946 288 NI--SVNFTGELSNSEVYKLYKENPVDVFVNLS--ESEGLPVSIMEAMSFGIPVIATNVGGTPEIVDNG--GNGLLLSK 360 (407)
T ss_pred Cc--eEEEecCCChHHHHHHHhhcCCCEEEeCC--ccccccHHHHHHHHcCCCEEeCCCCCcHHHhcCC--CcEEEeCC
Confidence 22 677765433 234444433 467766555 4788899999999999999999889888877543 68888753
No 68
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=89.26 E-value=1.7 Score=48.86 Aligned_cols=140 Identities=15% Similarity=0.171 Sum_probs=88.9
Q ss_pred CcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcC
Q 003055 574 DAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPE 653 (852)
Q Consensus 574 dslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~ 653 (852)
+..+.+.+-|+++.|.... ++..+.++.+... .... .....+++.|.. |. -..+.+++.+.+
T Consensus 231 ~~~vi~~~grl~~~K~~~~-li~A~~~l~~~~~-~~~~----~~~i~l~ivG~G-~~---~~~l~~~~~~~~-------- 292 (415)
T cd03816 231 RPALLVSSTSWTPDEDFGI-LLDALVAYEKSAA-TGPK----LPKLLCIITGKG-PL---KEKYLERIKELK-------- 292 (415)
T ss_pred CceEEEEeccccCCCCHHH-HHHHHHHHHHhhc-cccc----CCCEEEEEEecC-cc---HHHHHHHHHHcC--------
Confidence 4456667789999998887 7777666544321 0000 112678888863 22 344555554332
Q ss_pred CCCcceEEEecCC-ChhhhhhhccccccccccCCC-ccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 003055 654 IGDLLKVIFVPDY-NVSVAELLIPASELSQHISTA-GMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 731 (852)
Q Consensus 654 v~~~lKVvFlenY-~vslAe~lipa~Dvs~nis~a-g~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG~ 731 (852)
+. .++|+..| .-+-...++.+||+..-.+.. ..|.-+..-+-+|.-|.+.|+|--|...|+.++. +|+++++
T Consensus 293 l~---~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~--~~G~lv~- 366 (415)
T cd03816 293 LK---KVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHG--ENGLVFG- 366 (415)
T ss_pred CC---cEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCC--CCEEEEC-
Confidence 22 38887764 566667799999998621111 1233455567789999999999888888887654 7899996
Q ss_pred chhhhh
Q 003055 732 RAHEIA 737 (852)
Q Consensus 732 ~~~ev~ 737 (852)
+.+++.
T Consensus 367 d~~~la 372 (415)
T cd03816 367 DSEELA 372 (415)
T ss_pred CHHHHH
Confidence 455543
No 69
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=87.59 E-value=11 Score=43.60 Aligned_cols=132 Identities=11% Similarity=-0.002 Sum_probs=80.1
Q ss_pred CCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCc-HHHHHHHHHHHHHhhhhcCC
Q 003055 573 PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY-VQAKRIVKFITDVGATVNHD 651 (852)
Q Consensus 573 pdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y-~~aK~iIk~I~~va~~vn~D 651 (852)
++..+++++-|+...|.... ++..+.++.+ . .|.-+ ..++++..|...-++ ..-..+.+.+.+++..+|..
T Consensus 262 ~~~~~il~vgRl~~~Kgi~~-ll~A~~~ll~--~-~p~~~----~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~ 333 (460)
T cd03788 262 GGRKLIVGVDRLDYSKGIPE-RLLAFERLLE--R-YPEWR----GKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGK 333 (460)
T ss_pred CCCEEEEEecCccccCCHHH-HHHHHHHHHH--h-Chhhc----CCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhc
Confidence 45667899999999999877 6666655422 1 33211 124555544433222 22345566666665555531
Q ss_pred cCCCCcceEEEecC-CChhhhhhhccccccccccCCCccccCCCccchhhcccce-----Eeeeccccc
Q 003055 652 PEIGDLLKVIFVPD-YNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCI-----LIGTLDGAN 714 (852)
Q Consensus 652 p~v~~~lKVvFlen-Y~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l-----~lgtlDGan 714 (852)
-...+.-.|+|+.. .+-+-...+..+||+-...|++ |+=|..-+-+|.=|++ .+|..-|.-
T Consensus 334 ~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~--Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~ 400 (460)
T cd03788 334 FGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLR--DGMNLVAKEYVACQDDDPGVLILSEFAGAA 400 (460)
T ss_pred cCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeCccc--cccCcccceeEEEecCCCceEEEeccccch
Confidence 11111224777754 3566666788999999998874 8888888888887775 666555553
No 70
>PHA01630 putative group 1 glycosyl transferase
Probab=87.27 E-value=2.3 Score=47.04 Aligned_cols=118 Identities=9% Similarity=-0.024 Sum_probs=77.1
Q ss_pred cccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCC
Q 003055 575 AMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEI 654 (852)
Q Consensus 575 slfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~v 654 (852)
.+..++++|++++|...+ ++..+.+ +++ . .....+++.|. -+.. .++ . + +
T Consensus 142 ~~vl~~~g~~~~~Kg~d~-Li~A~~~---l~~-~-------~~~~~llivG~-~~~~---~~l---~-------~----~ 191 (331)
T PHA01630 142 PCVLAILPHSWDRKGGDI-VVKIFHE---LQN-E-------GYDFYFLIKSS-NMLD---PRL---F-------G----L 191 (331)
T ss_pred CEEEEEeccccccCCHHH-HHHHHHH---HHh-h-------CCCEEEEEEeC-cccc---hhh---c-------c----c
Confidence 346678999999998876 6555433 432 1 11356666672 1111 111 0 0 1
Q ss_pred CCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 003055 655 GDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 731 (852)
Q Consensus 655 ~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG~ 731 (852)
.+ ..-+++ -+--..++.+||+....|+ .|+-|..-.-+|.-|++.|+|-.|.+-|+.++ ++|++++..
T Consensus 192 ~~--~~~~v~---~~~l~~~y~~aDv~v~pS~--~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~--~~ng~lv~~ 259 (331)
T PHA01630 192 NG--VKTPLP---DDDIYSLFAGCDILFYPVR--GGAFEIPVIEALALGLDVVVTEKGAWSEWVLS--NLDVYWIKS 259 (331)
T ss_pred cc--eeccCC---HHHHHHHHHhCCEEEECCc--cccCChHHHHHHHcCCCEEEeCCCCchhhccC--CCceEEeee
Confidence 11 011222 2344557899999999888 49999999999999999999999998887654 378888854
No 71
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=86.55 E-value=0.7 Score=48.83 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=27.9
Q ss_pred CCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecC
Q 003055 40 EPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRY 75 (852)
Q Consensus 40 E~da~LgnGGLGrLAacfldS~a~L~~P~~GyGlrY 75 (852)
|..+=.-.||||..++..-+.++.+|..+.-+--+|
T Consensus 8 E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 8 EYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp -BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred ccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 443447789999999999999999999998888877
No 72
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=79.00 E-value=4.9 Score=42.06 Aligned_cols=125 Identities=16% Similarity=0.148 Sum_probs=81.8
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003055 571 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 650 (852)
Q Consensus 571 ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 650 (852)
++++..+.+++=|+...|...+ ++..+. ++++ . ..+.++++.|. .|. .+.+.+++....
T Consensus 184 ~~~~~~~~l~~g~~~~~kg~~~-li~a~~---~l~~-~-------~~~~~l~i~G~-g~~---~~~~~~~~~~~~----- 242 (360)
T cd04951 184 VKNDTFVILAVGRLVEAKDYPN-LLKAFA---KLLS-D-------YLDIKLLIAGD-GPL---RATLERLIKALG----- 242 (360)
T ss_pred cCCCCEEEEEEeeCchhcCcHH-HHHHHH---HHHh-h-------CCCeEEEEEcC-CCc---HHHHHHHHHhcC-----
Confidence 4566778888899999998877 555544 3432 0 12467888884 221 234444443322
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEec
Q 003055 651 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 729 (852)
Q Consensus 651 Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~F 729 (852)
..+ +|.|+.. ++-...++.+||+-...|+ .|..|..-+-+|.-|++.|++--|...|+.++ ++++|
T Consensus 243 ---~~~--~v~~~g~--~~~~~~~~~~ad~~v~~s~--~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~----~g~~~ 308 (360)
T cd04951 243 ---LSN--RVKLLGL--RDDIAAYYNAADLFVLSSA--WEGFGLVVAEAMACELPVVATDAGGVREVVGD----SGLIV 308 (360)
T ss_pred ---CCC--cEEEecc--cccHHHHHHhhceEEeccc--ccCCChHHHHHHHcCCCEEEecCCChhhEecC----CceEe
Confidence 122 5777763 3334467899999776655 38888888999999999999977877776643 55555
No 73
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=78.61 E-value=4.3 Score=37.29 Aligned_cols=124 Identities=18% Similarity=0.087 Sum_probs=64.8
Q ss_pred Ccccccccccccccccccchhhh-HHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCc
Q 003055 574 DAMFDIQVKRIHEYKRQLMNILG-IVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 652 (852)
Q Consensus 574 dslfdvq~kR~heYKRq~Lnil~-ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp 652 (852)
|.++.+.+-+++.+|.-.. ++. .+.+ +++. ..+.++++.|...+ + ++.. .
T Consensus 1 ~~~~i~~~g~~~~~k~~~~-li~~~~~~---l~~~--------~p~~~l~i~G~~~~------~-l~~~--~-------- 51 (135)
T PF13692_consen 1 DILYIGYLGRIRPDKGLEE-LIEAALER---LKEK--------HPDIELIIIGNGPD------E-LKRL--R-------- 51 (135)
T ss_dssp --EEEE--S-SSGGGTHHH-HHH-HHHH---HHHH--------STTEEEEEECESS-------H-HCCH--H--------
T ss_pred Ccccccccccccccccccc-hhhhHHHH---HHHH--------CcCEEEEEEeCCHH------H-HHHh--c--------
Confidence 3567788888888888776 555 5444 4321 22478888888433 1 2211 0
Q ss_pred CCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEecccc
Q 003055 653 EIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGAR 732 (852)
Q Consensus 653 ~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG~~ 732 (852)
.-+|.|++.. +-...++.+||+..... +.-+.+++.-+-+|..|++.|++-.| .-++.+. .+..+++..+
T Consensus 52 ----~~~v~~~g~~--~e~~~~l~~~dv~l~p~-~~~~~~~~k~~e~~~~G~pvi~~~~~-~~~~~~~--~~~~~~~~~~ 121 (135)
T PF13692_consen 52 ----RPNVRFHGFV--EELPEILAAADVGLIPS-RFNEGFPNKLLEAMAAGKPVIASDNG-AEGIVEE--DGCGVLVAND 121 (135)
T ss_dssp ----HCTEEEE-S---HHHHHHHHC-SEEEE-B-SS-SCC-HHHHHHHCTT--EEEEHHH-CHCHS-----SEEEE-TT-
T ss_pred ----CCCEEEcCCH--HHHHHHHHhCCEEEEEe-eCCCcCcHHHHHHHHhCCCEEECCcc-hhhheee--cCCeEEECCC
Confidence 1169998887 34455688899999644 44446677788899999999999663 3333332 2344444444
Q ss_pred hhhh
Q 003055 733 AHEI 736 (852)
Q Consensus 733 ~~ev 736 (852)
.+++
T Consensus 122 ~~~l 125 (135)
T PF13692_consen 122 PEEL 125 (135)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 74
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=77.83 E-value=20 Score=39.67 Aligned_cols=109 Identities=6% Similarity=0.023 Sum_probs=64.7
Q ss_pred CCcccccccccccccccccchhhhHHHH-HHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003055 573 PDAMFDIQVKRIHEYKRQLMNILGIVYR-YKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 651 (852)
Q Consensus 573 pdslfdvq~kR~heYKRq~Lnil~ii~r-y~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 651 (852)
++..+.+++=|+..+|.... ++..+.. +.++++. .....+++.|.... +. +.+.+. .
T Consensus 222 ~~~~~ilf~G~l~~~k~~~~-l~~~~~~~~~~l~~~--------~p~~~l~ivG~g~~-----~~----~~~l~~----~ 279 (397)
T TIGR03087 222 PGKRVLVFTGAMDYWPNIDA-VVWFAERVFPAVRAR--------RPAAEFYIVGAKPS-----PA----VRALAA----L 279 (397)
T ss_pred CCCcEEEEEEecCCccCHHH-HHHHHHHHHHHHHHH--------CCCcEEEEECCCCh-----HH----HHHhcc----C
Confidence 45567788999999997765 4433322 3344431 12357778886432 11 222221 1
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccc
Q 003055 652 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG 712 (852)
Q Consensus 652 p~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDG 712 (852)
+ .|.|+..-+ .+ ..++.+||+...-|+. .|..|..-+-+|.-|++.|+|-.|
T Consensus 280 ~------~V~~~G~v~-~~-~~~~~~adv~v~Ps~~-~eG~~~~~lEAma~G~PVV~t~~~ 331 (397)
T TIGR03087 280 P------GVTVTGSVA-DV-RPYLAHAAVAVAPLRI-ARGIQNKVLEAMAMAKPVVASPEA 331 (397)
T ss_pred C------CeEEeeecC-CH-HHHHHhCCEEEecccc-cCCcccHHHHHHHcCCCEEecCcc
Confidence 1 366664332 33 4577999999875542 244455567899999999999654
No 75
>PLN02275 transferase, transferring glycosyl groups
Probab=74.30 E-value=16 Score=40.43 Aligned_cols=135 Identities=13% Similarity=0.085 Sum_probs=83.8
Q ss_pred cccccccccccccccchhhhHHHHHHHHHhcChh--h---hh-cccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003055 577 FDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAV--E---RK-AKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 650 (852)
Q Consensus 577 fdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~--~---r~-~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 650 (852)
+.+.+-|+...|.... ++..+.++......... . ++ .......+++.|.- |.- .++-+++.+.+
T Consensus 215 ~i~~~grl~~~k~~~~-li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G-~~~---~~l~~~~~~~~----- 284 (371)
T PLN02275 215 LVVSSTSWTPDEDFGI-LLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKG-PQK---AMYEEKISRLN----- 284 (371)
T ss_pred EEEEeCceeccCCHHH-HHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCC-CCH---HHHHHHHHHcC-----
Confidence 4456789999999876 66665555322100000 0 00 00123678888864 221 23344443332
Q ss_pred CcCCCCcceEEEecCC-ChhhhhhhccccccccccCCCc--cccCCCccchhhcccceEeeecccccccccccccccceE
Q 003055 651 DPEIGDLLKVIFVPDY-NVSVAELLIPASELSQHISTAG--MEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFF 727 (852)
Q Consensus 651 Dp~v~~~lKVvFlenY-~vslAe~lipa~Dvs~nis~ag--~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f 727 (852)
+. .|+|++.| .-+-...++.+||+..- |..+ .|..|++-+-+|.-|.+.|+|-.|..-|+.++. +|++
T Consensus 285 ---l~---~v~~~~~~~~~~~~~~~l~~aDv~v~-~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g--~~G~ 355 (371)
T PLN02275 285 ---LR---HVAFRTMWLEAEDYPLLLGSADLGVS-LHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELVKDG--KNGL 355 (371)
T ss_pred ---CC---ceEEEcCCCCHHHHHHHHHhCCEEEE-eccccccccccHHHHHHHHCCCCEEEecCCChHHHccCC--CCeE
Confidence 22 38887764 45555677899999863 2211 266677788899999999999999988887654 7999
Q ss_pred ecc
Q 003055 728 LFG 730 (852)
Q Consensus 728 ~FG 730 (852)
++.
T Consensus 356 lv~ 358 (371)
T PLN02275 356 LFS 358 (371)
T ss_pred EEC
Confidence 997
No 76
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=73.71 E-value=19 Score=39.32 Aligned_cols=125 Identities=11% Similarity=0.022 Sum_probs=76.1
Q ss_pred ccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCC
Q 003055 576 MFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIG 655 (852)
Q Consensus 576 lfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~v~ 655 (852)
...+++=|+..+|..-+ ...+..+.+++ .+..+++.|.. |... .+-+++... .+.
T Consensus 181 ~~i~~~Grl~~~~~k~~--~~l~~a~~~~~-----------~~~~l~ivG~g-~~~~---~l~~~~~~~--------~l~ 235 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNV--KELFDGLSQTT-----------GEWQLHIIGDG-SDFE---KCKAYSREL--------GIE 235 (359)
T ss_pred cEEEEEEEEecccCcCH--HHHHHHHHhhC-----------CCeEEEEEeCC-ccHH---HHHHHHHHc--------CCC
Confidence 44567778876644322 22233333332 14578888754 3322 233333222 123
Q ss_pred CcceEEEecCCCh--hhhhhhccccccccccCCCccccCCCccchhhcccceEeeec-ccccccccccccccceEeccc
Q 003055 656 DLLKVIFVPDYNV--SVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTL-DGANVEIRQEVGEENFFLFGA 731 (852)
Q Consensus 656 ~~lKVvFlenY~v--slAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtl-DGanvEi~e~vg~eN~f~FG~ 731 (852)
+ +|.|+.--+. +.....+..||+....|+ .|+-|.+-.-+|.-|.+.|+|- .|...|+.+. ..|++++..
T Consensus 236 ~--~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~--~Egf~~~~lEAma~G~Pvv~s~~~~g~~eiv~~--~~~G~lv~~ 308 (359)
T PRK09922 236 Q--RIIWHGWQSQPWEVVQQKIKNVSALLLTSK--FEGFPMTLLEAMSYGIPCISSDCMSGPRDIIKP--GLNGELYTP 308 (359)
T ss_pred C--eEEEecccCCcHHHHHHHHhcCcEEEECCc--ccCcChHHHHHHHcCCCEEEeCCCCChHHHccC--CCceEEECC
Confidence 3 6888865332 333445567899998775 6999999999999999999996 5666676654 368888853
No 77
>PHA01633 putative glycosyl transferase group 1
Probab=71.83 E-value=16 Score=41.22 Aligned_cols=122 Identities=16% Similarity=0.080 Sum_probs=81.5
Q ss_pred CCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCc
Q 003055 573 PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 652 (852)
Q Consensus 573 pdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp 652 (852)
|+.+..+++-|++.+|.+.+ ++..+.++.+- .+.-. ...++++.|. + .+.+.
T Consensus 146 ~~~~~i~~vGRl~~~KG~~~-LI~A~~~L~~~---~p~~~----~~i~l~ivG~--------~----~~~~l-------- 197 (335)
T PHA01633 146 PDTIKFGIVSGLTKRKNMDL-MLQVFNELNTK---YPDIA----KKIHFFVISH--------K----QFTQL-------- 197 (335)
T ss_pred CCCeEEEEEeCCccccCHHH-HHHHHHHHHHh---CCCcc----ccEEEEEEcH--------H----HHHHc--------
Confidence 36677788999999999998 77776654321 11100 0235666662 1 11111
Q ss_pred CCCCcceEEEecCCC---hhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEec
Q 003055 653 EIGDLLKVIFVPDYN---VSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 729 (852)
Q Consensus 653 ~v~~~lKVvFlenY~---vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~F 729 (852)
.+.+ +|.|+-.+. -+-...++.+||+-..-|+ .|+.|-.-+-+|--|++.|++--|...|+. |....++|
T Consensus 198 ~l~~--~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~--~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~---g~~~~~Li 270 (335)
T PHA01633 198 EVPA--NVHFVAEFGHNSREYIFAFYGAMDFTIVPSG--TEGFGMPVLESMAMGTPVIHQLMPPLDEFT---SWQWNLLI 270 (335)
T ss_pred CCCC--cEEEEecCCCCCHHHHHHHHHhCCEEEECCc--cccCCHHHHHHHHcCCCEEEccCCCceeec---CCccceee
Confidence 1333 678875332 2334568899999998887 599999999999999999999888888875 33333665
No 78
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=58.73 E-value=94 Score=36.33 Aligned_cols=134 Identities=13% Similarity=0.125 Sum_probs=77.1
Q ss_pred CcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEE-eccCCCCcHHHHHHHHHHHHHhhhhcCCc
Q 003055 574 DAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIF-GGKAFATYVQAKRIVKFITDVGATVNHDP 652 (852)
Q Consensus 574 dslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IF-aGKA~P~y~~aK~iIk~I~~va~~vn~Dp 652 (852)
+...++.|=|++.-|.... +|..+.++.+ + .|..+ ..+++|. ||........-..+.+.|.+++..||..-
T Consensus 258 ~~~vIl~VgRLd~~KGi~~-ll~A~~~ll~--~-~p~~~----~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~ 329 (456)
T TIGR02400 258 GRKLIIGVDRLDYSKGLPE-RLLAFERFLE--E-HPEWR----GKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRF 329 (456)
T ss_pred CCeEEEEccccccccCHHH-HHHHHHHHHH--h-Ccccc----CceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhcc
Confidence 4557789999999998877 7777666532 2 33321 1234544 43222222223456666666655565421
Q ss_pred CCCCcceEEEecC-CChhhhhhhccccccccccCCCccccCCCccchhhcc-----cceEeeecccccccc
Q 003055 653 EIGDLLKVIFVPD-YNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMN-----GCILIGTLDGANVEI 717 (852)
Q Consensus 653 ~v~~~lKVvFlen-Y~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamN-----G~l~lgtlDGanvEi 717 (852)
..-+...|+|+.. .+-+---.+..+|||-.-+|.+ |.-|..-+-||.- |++.+|...|+--++
T Consensus 330 ~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~--EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l 398 (456)
T TIGR02400 330 GTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLR--DGMNLVAKEYVAAQDPKDGVLILSEFAGAAQEL 398 (456)
T ss_pred CCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccc--cccCccHHHHHHhcCCCCceEEEeCCCCChHHh
Confidence 1112234777764 3344555678999998887764 5545444444433 556888888876544
No 79
>PRK10125 putative glycosyl transferase; Provisional
Probab=51.04 E-value=35 Score=38.83 Aligned_cols=56 Identities=13% Similarity=-0.056 Sum_probs=47.3
Q ss_pred hhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 003055 671 AELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 731 (852)
Q Consensus 671 Ae~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG~ 731 (852)
-..++.+||+....|. .|.-|+..+-+|.-|.+.|+|-=|...|+.+. .|++++..
T Consensus 300 l~~~y~~aDvfV~pS~--~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~~---~~G~lv~~ 355 (405)
T PRK10125 300 LMSALNQMDALVFSSR--VDNYPLILCEALSIGVPVIATHSDAAREVLQK---SGGKTVSE 355 (405)
T ss_pred HHHHHHhCCEEEECCc--cccCcCHHHHHHHcCCCEEEeCCCChHHhEeC---CcEEEECC
Confidence 3456789999998776 79999999999999999999988888887643 48998865
No 80
>PLN02501 digalactosyldiacylglycerol synthase
Probab=50.57 E-value=60 Score=40.67 Aligned_cols=118 Identities=11% Similarity=0.031 Sum_probs=79.1
Q ss_pred cccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcc
Q 003055 579 IQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLL 658 (852)
Q Consensus 579 vq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~v~~~l 658 (852)
.++=|++..|.... ++..+. +++. . .....+++.|.- |.- ..+-+++.+.+ +
T Consensus 550 LfVGRLa~EKGld~-LLeAla---~L~~-~-------~pnvrLvIVGDG-P~r---eeLe~la~eLg------------L 601 (794)
T PLN02501 550 YFLGKMVWAKGYRE-LIDLLA---KHKN-E-------LDGFNLDVFGNG-EDA---HEVQRAAKRLD------------L 601 (794)
T ss_pred EEEEcccccCCHHH-HHHHHH---HHHh-h-------CCCeEEEEEcCC-ccH---HHHHHHHHHcC------------C
Confidence 45669999999877 655443 3432 1 113467777753 322 22333333221 2
Q ss_pred eEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 003055 659 KVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 731 (852)
Q Consensus 659 KVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG~ 731 (852)
.|.|+.. ...+..++.++||.-+-|+ .|.=|+.-+-+|.-|++.|+|--|.+..+. +..|+++++.
T Consensus 602 ~V~FLG~--~dd~~~lyasaDVFVlPS~--sEgFGlVlLEAMA~GlPVVATd~pG~e~V~---~g~nGll~~D 667 (794)
T PLN02501 602 NLNFLKG--RDHADDSLHGYKVFINPSI--SDVLCTATAEALAMGKFVVCADHPSNEFFR---SFPNCLTYKT 667 (794)
T ss_pred EEEecCC--CCCHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCCEEEecCCCCceEe---ecCCeEecCC
Confidence 5788754 4556678999999999887 699999999999999999999877654332 2378888854
No 81
>PLN02846 digalactosyldiacylglycerol synthase
Probab=38.77 E-value=1e+02 Score=36.44 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=79.6
Q ss_pred ccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCc
Q 003055 578 DIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDL 657 (852)
Q Consensus 578 dvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~v~~~ 657 (852)
.+++=|++.-|.... ++.. +.+|++..+ ...+++.|.- |.-. ++-+++.+++
T Consensus 231 ~l~vGRL~~eK~~~~-Li~a---~~~l~~~~~--------~~~l~ivGdG-p~~~---~L~~~a~~l~------------ 282 (462)
T PLN02846 231 AYYIGKMVWSKGYKE-LLKL---LHKHQKELS--------GLEVDLYGSG-EDSD---EVKAAAEKLE------------ 282 (462)
T ss_pred EEEEecCcccCCHHH-HHHH---HHHHHhhCC--------CeEEEEECCC-ccHH---HHHHHHHhcC------------
Confidence 568899999998877 5544 444543011 2346666655 3322 2222222221
Q ss_pred ceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 003055 658 LKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 731 (852)
Q Consensus 658 lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG~ 731 (852)
+.+.|+..+. -.+.++.++||..+-|+ .|.-|+.-+-+|.-|.+.|++-.|.+ |+... ..|++++..
T Consensus 283 l~~~vf~G~~--~~~~~~~~~DvFv~pS~--~Et~g~v~lEAmA~G~PVVa~~~~~~-~~v~~--~~ng~~~~~ 349 (462)
T PLN02846 283 LDVRVYPGRD--HADPLFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPSN-EFFKQ--FPNCRTYDD 349 (462)
T ss_pred CcEEEECCCC--CHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCcEEEecCCCc-ceeec--CCceEecCC
Confidence 1233455552 44568899999999997 79999999999999999999988875 76655 489999954
No 82
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=34.79 E-value=2.4e+02 Score=27.86 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=76.3
Q ss_pred ccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCC-eEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCC
Q 003055 576 MFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVP-RVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEI 654 (852)
Q Consensus 576 lfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P-~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~v 654 (852)
.+..++-|+.+.|+..+ ++..+..+.+. .| ..+++.|..... -..+.+++.... .
T Consensus 200 ~~i~~~g~~~~~k~~~~-~i~~~~~~~~~------------~~~~~~~~~g~~~~~---~~~~~~~~~~~~----~---- 255 (381)
T COG0438 200 FVVLYVGRLDPEKGLDL-LIEAAAKLKKR------------GPDIKLVIVGDGPER---REELEKLAKKLG----L---- 255 (381)
T ss_pred eEEEEeeccChhcCHHH-HHHHHHHhhhh------------cCCeEEEEEcCCCcc---HHHHHHHHHHhC----C----
Confidence 67888888988888777 55444333221 12 567777777665 111111222221 1
Q ss_pred CCcceEEEecCCC-hhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEeccc
Q 003055 655 GDLLKVIFVPDYN-VSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 731 (852)
Q Consensus 655 ~~~lKVvFlenY~-vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~FG~ 731 (852)
.+ +|.|+-.-. -.+.+ +...||+...-|.- |+-|..-+.++..|.+.|+|-=|...|+....+ +++++..
T Consensus 256 ~~--~v~~~g~~~~~~~~~-~~~~~~~~v~ps~~--e~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~~~~--~g~~~~~ 326 (381)
T COG0438 256 ED--NVKFLGYVPDEELAE-LLASADVFVLPSLS--EGFGLVLLEAMAAGTPVIASDVGGIPEVVEDGE--TGLLVPP 326 (381)
T ss_pred CC--cEEEecccCHHHHHH-HHHhCCEEEecccc--ccchHHHHHHHhcCCcEEECCCCChHHHhcCCC--ceEecCC
Confidence 11 466633322 23444 66777888877666 888888888999999999998777877665442 4554443
No 83
>PF14474 RTC4: RTC4-like domain
Probab=33.96 E-value=32 Score=33.65 Aligned_cols=32 Identities=28% Similarity=0.512 Sum_probs=26.1
Q ss_pred hhhHHHHH-HHHHHhcCCCHHHHHHHhccceee
Q 003055 256 TLCIPELI-RILIDLKGLSWKEAWNITQRTVAY 287 (852)
Q Consensus 256 alai~ELm-R~Lid~~gl~w~eAw~i~~~~~~f 287 (852)
.+++||++ |..+++-+++.++|++|.+++.-|
T Consensus 85 ~VLvPEl~~~LI~EDm~v~~~~A~~il~eS~~~ 117 (124)
T PF14474_consen 85 YVLVPELAVRLIMEDMGVDDEEARQILEESSEY 117 (124)
T ss_pred HHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 46899994 555678899999999999988655
No 84
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=30.52 E-value=1.3e+02 Score=36.11 Aligned_cols=148 Identities=15% Similarity=0.082 Sum_probs=101.5
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccC--CCCcHHHHHHHHHHHHHhhhh
Q 003055 571 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKA--FATYVQAKRIVKFITDVGATV 648 (852)
Q Consensus 571 ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA--~P~y~~aK~iIk~I~~va~~v 648 (852)
+.-.-+|+.-+-||..-|.|.| +|....+++.... +++ +.-...+|+|+- -+.+-.-..-++-+.++.+..
T Consensus 269 v~~~d~~~~siN~~~pgkd~~l-~l~a~~~~~~~i~-~~~-----~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~ 341 (495)
T KOG0853|consen 269 VSGIDRFFPSINRFEPGKDQDL-ALPAFTLLHDSIP-EPS-----ISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEY 341 (495)
T ss_pred ecccceEeeeeeecCCCCCcee-ehhhHHhhhcccC-CCC-----CCceEEEEecCCCccccchhhHHHHHHHHHHHHHh
Confidence 3444678888889999999999 8886666554432 111 223345555532 344444455566666665543
Q ss_pred cCCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceEe
Q 003055 649 NHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFL 728 (852)
Q Consensus 649 n~Dp~v~~~lKVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGanvEi~e~vg~eN~f~ 728 (852)
+ ..++ .|.|++-- +-++...-++|.--...++..|+=|=--.-||-=|.++|+|--|--.||.... .|+|+
T Consensus 342 ~---l~g~--~v~~~~s~--~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~--~tG~l 412 (495)
T KOG0853|consen 342 D---LLGQ--FVWFLPST--TRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVHG--VTGLL 412 (495)
T ss_pred C---ccCc--eEEEecCC--chHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEcC--Cccee
Confidence 2 2234 57787763 33444556677777777777799999999999999999999999999999776 89999
Q ss_pred cccchh
Q 003055 729 FGARAH 734 (852)
Q Consensus 729 FG~~~~ 734 (852)
.-.+.+
T Consensus 413 ~dp~~e 418 (495)
T KOG0853|consen 413 IDPGQE 418 (495)
T ss_pred eCCchH
Confidence 887544
No 85
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=23.84 E-value=6.1e+02 Score=30.50 Aligned_cols=176 Identities=11% Similarity=0.073 Sum_probs=101.6
Q ss_pred CcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCc-
Q 003055 574 DAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP- 652 (852)
Q Consensus 574 dslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp- 652 (852)
.++.=++|=|+ +=|+..- ++..+.+|.+- .| -.++.|-|...+. ...+.+-++|..+....+.+.
T Consensus 320 ~~~I~v~idrL-~ek~~~~-~I~av~~~~~~---~p--------~~~L~~~gy~~~~-~~~~~l~~~i~~~~~~~~~~~~ 385 (519)
T TIGR03713 320 ETEIGFWIDGL-SDEELQQ-ILQQLLQYILK---NP--------DYELKILTYNNDN-DITQLLEDILEQINEEYNQDKN 385 (519)
T ss_pred ceEEEEEcCCC-ChHHHHH-HHHHHHHHHhh---CC--------CeEEEEEEecCch-hHHHHHHHHHHHHHhhhchhhh
Confidence 34444455588 7777666 66666666332 22 2467788888553 234555555555543321111
Q ss_pred -----------------CCCCcceEEEecCCCh--hhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccc
Q 003055 653 -----------------EIGDLLKVIFVPDYNV--SVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGA 713 (852)
Q Consensus 653 -----------------~v~~~lKVvFlenY~v--slAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlDGa 713 (852)
+-......|++.+|-- ++.+.+ .-+. +-+.+...|.=| +-|-++--|++.| .=|.
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~v~f~gy~~e~dl~~~~-~~ar--l~id~s~~eg~~-~~ieAiS~GiPqI--nyg~ 459 (519)
T TIGR03713 386 FFSLSEQDENQPILQTDEEQKEKERIAFTTLTNEEDLISAL-DKLR--LIIDLSKEPDLY-TQISGISAGIPQI--NKVE 459 (519)
T ss_pred ccccchhhhhhhcccchhhcccccEEEEEecCCHHHHHHHH-hhhe--EEEECCCCCChH-HHHHHHHcCCCee--ecCC
Confidence 1111114688888877 666433 3333 344555566667 7777888888888 1111
Q ss_pred cccccccccccceEecccchhhhhhhhhhcCCCCCCCChhHHHHHHHHhcCCCCcccHHHHHHHhccCCCCCCCcccccc
Q 003055 714 NVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVG 793 (852)
Q Consensus 714 nvEi~e~vg~eN~f~FG~~~~ev~~l~~~~~~~~~~~~~~~~~v~d~i~~g~f~~~~~~~l~~~L~~~~~~~~~D~y~vl 793 (852)
-|+.+. ..||+|.|. ...|.
T Consensus 460 -~~~V~d--~~NG~li~d---------------------------------------~~~l~------------------ 479 (519)
T TIGR03713 460 -TDYVEH--NKNGYIIDD---------------------------------------ISELL------------------ 479 (519)
T ss_pred -ceeeEc--CCCcEEeCC---------------------------------------HHHHH------------------
Confidence 112222 245555522 22332
Q ss_pred cchhHHHHHHHHHHHHhcCHhHHHHHHHHhhhcCCCCChhHHHHHH
Q 003055 794 KDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEY 839 (852)
Q Consensus 794 aDF~sY~~aQ~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eY 839 (852)
+.+..+..+.+.|.+++..++..+-.||++..+...
T Consensus 480 ----------~al~~~L~~~~~wn~~~~~sy~~~~~yS~~~i~~kW 515 (519)
T TIGR03713 480 ----------KALDYYLDNLKNWNYSLAYSIKLIDDYSSENIIERL 515 (519)
T ss_pred ----------HHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 244445678899999999999999999999888653
No 86
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=22.54 E-value=1.7e+02 Score=27.31 Aligned_cols=38 Identities=32% Similarity=0.373 Sum_probs=30.3
Q ss_pred CCCceEEeCCCC---hhhhHHHHHHHHHHhcCCCHHHHHHHhccc
Q 003055 243 PEKVAVQMNDTH---PTLCIPELIRILIDLKGLSWKEAWNITQRT 284 (852)
Q Consensus 243 ~~~~~ihlNDtH---palai~ELmR~Lid~~gl~w~eAw~i~~~~ 284 (852)
+.++.||.+.|+ +++++..+|+ ..+++.++|++.+++.
T Consensus 81 ~~~vlVHC~~G~~Rs~~~~~~~l~~----~~~~~~~~a~~~vr~~ 121 (139)
T cd00127 81 GGKVLVHCLAGVSRSATLVIAYLMK----TLGLSLREAYEFVKSR 121 (139)
T ss_pred CCcEEEECCCCCchhHHHHHHHHHH----HcCCCHHHHHHHHHHH
Confidence 478899999998 5666666665 3499999999988764
No 87
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=21.50 E-value=7.3e+02 Score=29.82 Aligned_cols=140 Identities=10% Similarity=0.076 Sum_probs=85.1
Q ss_pred HHHHHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCC-CCcHHHHHHH
Q 003055 560 VSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAF-ATYVQAKRIV 638 (852)
Q Consensus 560 ~~~I~~~~g~~ldpdslfdvq~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~-P~y~~aK~iI 638 (852)
++.++++.| +.-.++.|=|+..=|= +...|.-++++ |++ .|.-+ .-+++|..|... ..-..-+++.
T Consensus 275 ~~~lr~~~~-----~~kiIl~VDRLDy~KG-I~~kl~Afe~~--L~~-~Pe~~----gkv~Lvqi~~psr~~v~~y~~l~ 341 (487)
T TIGR02398 275 MERIRSELA-----GVKLILSAERVDYTKG-ILEKLNAYERL--LER-RPELL----GKVTLVTACVPAASGMTIYDELQ 341 (487)
T ss_pred HHHHHHHcC-----CceEEEEecccccccC-HHHHHHHHHHH--HHh-Ccccc----CceEEEEEeCCCcccchHHHHHH
Confidence 334555555 3446678888865554 33366666665 333 44432 124565554443 2223336677
Q ss_pred HHHHHHhhhhcCCcCCCCcceEEEecCC-ChhhhhhhccccccccccCCC------cccc--CCCccchhhcccceEeee
Q 003055 639 KFITDVGATVNHDPEIGDLLKVIFVPDY-NVSVAELLIPASELSQHISTA------GMEA--SGTSNMKFAMNGCILIGT 709 (852)
Q Consensus 639 k~I~~va~~vn~Dp~v~~~lKVvFlenY-~vslAe~lipa~Dvs~nis~a------g~EA--SGTsnMKfamNG~l~lgt 709 (852)
+.|.+++..||..=-.-+.--|+++..+ .-+.--.+..+|||-.-+|.+ ++|+ |++ .-.|+|.+|-
T Consensus 342 ~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~-----~~~GvLILSe 416 (487)
T TIGR02398 342 GQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQG-----LLDGVLVLSE 416 (487)
T ss_pred HHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhc-----CCCCCEEEec
Confidence 7788877777754222233456666654 555555688999999999986 3454 544 2479999999
Q ss_pred cccccccc
Q 003055 710 LDGANVEI 717 (852)
Q Consensus 710 lDGanvEi 717 (852)
.-|+-.+.
T Consensus 417 faGaa~~l 424 (487)
T TIGR02398 417 FAGAAVEL 424 (487)
T ss_pred cccchhhc
Confidence 99987554
No 88
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=21.00 E-value=4e+02 Score=29.19 Aligned_cols=69 Identities=17% Similarity=0.070 Sum_probs=44.5
Q ss_pred eEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecc-cccccccccccccceEecccchhhhh
Q 003055 659 KVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLD-GANVEIRQEVGEENFFLFGARAHEIA 737 (852)
Q Consensus 659 KVvFlenY~vslAe~lipa~Dvs~nis~ag~EASGTsnMKfamNG~l~lgtlD-GanvEi~e~vg~eN~f~FG~~~~ev~ 737 (852)
+|.|++...-.-.-.++..||+-.- .||+.-+-+|.=|++.|.+.+ |.+.|+.+. .+..+.+.+.+++.
T Consensus 256 ~v~~~~~~~~~~~~~~l~~ad~vv~-------~Sg~~~~EA~a~g~PvI~~~~~~~~~e~~~~---g~~~lv~~d~~~i~ 325 (365)
T TIGR00236 256 RVHLIEPLEYLDFLNLAANSHLILT-------DSGGVQEEAPSLGKPVLVLRDTTERPETVEA---GTNKLVGTDKENIT 325 (365)
T ss_pred CEEEECCCChHHHHHHHHhCCEEEE-------CChhHHHHHHHcCCCEEECCCCCCChHHHhc---CceEEeCCCHHHHH
Confidence 5888875443333356788888632 247777889999999999866 656666642 23445565555553
No 89
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=20.85 E-value=2.8e+02 Score=25.89 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=31.9
Q ss_pred CCCceEEeCCCC---hhhhHHHHHHHHHHhcCCCHHHHHHHhccc
Q 003055 243 PEKVAVQMNDTH---PTLCIPELIRILIDLKGLSWKEAWNITQRT 284 (852)
Q Consensus 243 ~~~~~ihlNDtH---palai~ELmR~Lid~~gl~w~eAw~i~~~~ 284 (852)
+.++.||..-|. |++++.-||+ ..|++.++|++.+++.
T Consensus 73 ~~~VlVHC~~G~~RS~~v~~ayLm~----~~~~~~~~A~~~v~~~ 113 (133)
T PF00782_consen 73 GGKVLVHCKAGLSRSGAVAAAYLMK----KNGMSLEEAIEYVRSR 113 (133)
T ss_dssp TSEEEEEESSSSSHHHHHHHHHHHH----HHTSSHHHHHHHHHHH
T ss_pred cceeEEEeCCCcccchHHHHHHHHH----HcCCCHHHHHHHHHHH
Confidence 367899999999 8888888876 4699999999998765
Done!