RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 003055
(852 letters)
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence,
starch degrading, transferase, glycosyltransferase; HET:
PLP; 1.9A {Corynebacterium callunae}
Length = 796
Score = 675 bits (1745), Expect = 0.0
Identities = 177/403 (43%), Positives = 252/403 (62%), Gaps = 9/403 (2%)
Query: 452 VRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPD 511
V MA + ++++NGVA +H+EI+ E ++Y LWPEKF NKTNGVTPRRW+R NP
Sbjct: 393 VHMAWIACYAAYSINGVAALHTEIIKAETLADWYALWPEKFNNKTNGVTPRRWLRMINPG 452
Query: 512 LSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSV 571
LS +LT G++DWVT+ +L +LR +AD++ + + RA K NK +I E+ G +
Sbjct: 453 LSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLEELRAIKAANKQDFAEWILERQGIEI 512
Query: 572 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY 631
P+++FD+Q+KR+HEYKRQLMN L ++ Y ++KE + R IFG KA Y
Sbjct: 513 DPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKE----DGLTDIPARTVIFGAKAAPGY 568
Query: 632 VQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEA 691
V+AK I+K I + VN+DPE+ LLKV+FV +YNVS AE ++PAS++S+ ISTAG EA
Sbjct: 569 VRAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEA 628
Query: 692 SGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE-RSEGKFVP 750
SGTSNMKF MNG + +GT+DGANVEI VGEEN ++FGAR E+ LR+ + +
Sbjct: 629 SGTSNMKFMMNGALTLGTMDGANVEIVDSVGEENAYIFGARVEELPALRESYKPYELYET 688
Query: 751 DARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVD 807
+ + +G N + +L SL G +D + V DF Y E ++++
Sbjct: 689 VPGLKRALDALDNGTLNDNNSGLFYDLKHSLIHGYGKDASDTYYVLGDFADYRETRDRMA 748
Query: 808 EAYC-DQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPV 849
Y D W RM+ +N S +FSSDRTI++YA +IW + P
Sbjct: 749 ADYASDPLGWARMAWINICESGRFSSDRTIRDYATEIWKLEPT 791
Score = 532 bits (1372), Expect = e-178
Identities = 144/351 (41%), Positives = 188/351 (53%), Gaps = 27/351 (7%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDS 60
EFL GRALLN + NLGL A A +LG L +++ E DAALGNGGLGRLA+CFLDS
Sbjct: 67 AEFLMGRALLNNLTNLGLVDEAAAATRELGHELTDILEIENDAALGNGGLGRLAACFLDS 126
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
T +YP GYGL Y++GLF+Q + Q E + W E P+ I R V F
Sbjct: 127 AVTQDYPVTGYGLLYRFGLFRQSFNEGFQVEKPDPWREEEYPFTIRRASDQLVVCF---- 182
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
+A+ YD+PI GY T LRLW P E+FD AFNA T
Sbjct: 183 -----------DDMKTRAIPYDMPITGYGTHNVGTLRLWKAE-PWEEFDYDAFNAQRFTD 230
Query: 181 AAEALTNAEKVPICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWE 240
A IC +LYP D + EGK LR++QQY SASLQ +I +
Sbjct: 231 AIIERERVSD--ICRVLYPNDTTYEGKKLRVRQQYFFTSASLQAMIQDHLAHHK---DLS 285
Query: 241 EFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKW 300
F E +VQ+NDTHP L IPEL+R+L+D + W+E+W I +T AYTNHTVL EALE+W
Sbjct: 286 NFAEFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEALEQW 345
Query: 301 SFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLKETRILEN 351
++ Q+L R EII ID ++ D + + + +++
Sbjct: 346 DEQIFQQLFWRVWEIIAEIDRRFRLERAADGL--DEETINR----MAPIQH 390
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH;
1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB:
2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A*
3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A*
1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Length = 824
Score = 674 bits (1742), Expect = 0.0
Identities = 180/412 (43%), Positives = 263/412 (63%), Gaps = 18/412 (4%)
Query: 448 PPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRF 507
+ + MA+LC+ GSHAVNGVA IHSEI+ +F +FY+L P KFQNKTNG+TPRRW+
Sbjct: 424 AVKRINMAHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVL 483
Query: 508 CNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKT 567
CNP L+ I+ +G E+++++ +L +L + D+E K+ NK+K ++++ +
Sbjct: 484 CNPGLAEIIAERIG-EEYISDLDQLRKLLSYVDDEAFIRDVAKVKQENKLKFAAYLEREY 542
Query: 568 GYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKA 627
++P+++FD+QVKRIHEYKRQL+N L ++ Y ++K+ E VPR + GGKA
Sbjct: 543 KVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKK----EPNKFVVPRTVMIGGKA 598
Query: 628 FATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTA 687
Y AK I+K IT +G VNHDP +GD L+VIF+ +Y VS+AE +IPA++LS+ ISTA
Sbjct: 599 APGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTA 658
Query: 688 GMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSE 745
G EASGT NMKF +NG + IGT+DGANVE+ +E GEENFF+FG R ++ L + ++
Sbjct: 659 GTEASGTGNMKFMLNGALTIGTMDGANVEMAEEAGEENFFIFGMRVEDVDRLDQRGYNAQ 718
Query: 746 GKFVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDFPSYLEC 802
+ ++ + + SG F + +++ L + D F V D+ Y++C
Sbjct: 719 EYYDRIPELRQIIEQLSSGFFSPKQPDLFKDIVNMLMHH------DRFKVFADYEEYVKC 772
Query: 803 QEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI--IPVELP 852
QE+V Y + + WTRM I N A S KFSSDRTI +YAR+IW + LP
Sbjct: 773 QERVSALYKNPREWTRMVIRNIATSGKFSSDRTIAQYAREIWGVEPSRQRLP 824
Score = 551 bits (1422), Expect = 0.0
Identities = 162/346 (46%), Positives = 222/346 (64%), Gaps = 10/346 (2%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDS 60
+EF GR L N + NL L A EA +LG +E + E DA LGNGGLGRLA+CFLDS
Sbjct: 76 LEFYMGRTLQNTMVNLALENACDEATYQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDS 135
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MATL A+GYG+RY++G+F Q+I Q E A+DWL GNPWE R + + PV FYG++
Sbjct: 136 MATLGLAAYGYGIRYEFGIFNQKICGGWQMEEADDWLRYGNPWEKARPEFTLPVHFYGRV 195
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
S G + W+ + + A+ YD P+PGY+ +RLWS DF+L FN G + +
Sbjct: 196 EHTSQG-AKWVDTQVVLAMPYDTPVPGYRNNVVNTMRLWSAK-APNDFNLKDFNVGGYIQ 253
Query: 181 AAEALTNAEKVPICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANV--- 237
A AE I +LYP D EGK LRLKQ+Y + +A+LQDII RF+
Sbjct: 254 AVLDRNLAEN--ISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKSSKFGCRDPV 311
Query: 238 --NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPE 295
N++ FP+KVA+Q+NDTHP+L IPEL+R+L+DL+ L W +AW +T +T AYTNHTVLPE
Sbjct: 312 RTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKAWEVTVKTCAYTNHTVLPE 371
Query: 296 ALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEK 341
ALE+W L++ LLPRH++II I++ ++ + + + D D L +
Sbjct: 372 ALERWPVHLLETLLPRHLQIIYEINQRFLNRVAAAFP-GDVDRLRR 416
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex,
trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP:
c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A*
2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Length = 796
Score = 663 bits (1712), Expect = 0.0
Identities = 184/400 (46%), Positives = 264/400 (66%), Gaps = 14/400 (3%)
Query: 452 VRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPD 511
V MANLCVVG AVNGVA +HS++V ++F E+++LWP KF N TNG+TPRRWI+ CNP
Sbjct: 404 VHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPA 463
Query: 512 LSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSV 571
L+++L L ++W + +L L KFAD+ + Q+R K+ NK+++ F+K +TG +
Sbjct: 464 LAALLDKSLQ-KEWANDLDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEI 522
Query: 572 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY 631
+P A+FDIQ+KR+HEYKRQ +N+L I+ YK+++E +A VPRV +FG KA Y
Sbjct: 523 NPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENP----QADRVPRVFLFGAKAAPGY 578
Query: 632 VQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEA 691
AK I+ I V +N+DP +GD LKV+F+PDY VS AE LIPA+++S+ ISTAG EA
Sbjct: 579 YLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEA 638
Query: 692 SGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKE--RSEGKFV 749
SGT NMK A+NG + +GTLDGANVEI ++VGEEN F+FG ++ + +
Sbjct: 639 SGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRK 698
Query: 750 PDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKV 806
D + V K ++SG + + +D+++ S+ G D +LV DF +Y+E Q++V
Sbjct: 699 KDKVLDAVLKELESGKYSDGDKHAFDQMLHSI----GKQGGDPYLVMADFAAYVEAQKQV 754
Query: 807 DEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI 846
D Y DQ+ WTR +I+NTA FSSDR+I++Y IW
Sbjct: 755 DVLYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIWQA 794
Score = 545 bits (1408), Expect = 0.0
Identities = 143/351 (40%), Positives = 196/351 (55%), Gaps = 15/351 (4%)
Query: 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDS 60
MEFL GR N + NLG ++L +L +++ +E D ALGNGGLGRLA+CFLDS
Sbjct: 66 MEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLAACFLDS 125
Query: 61 MATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKI 120
MAT+ A GYGL Y+YGLF+Q Q E +DW PW + V GK+
Sbjct: 126 MATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQVGIGGKV 185
Query: 121 VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTK 180
DG+ W I A+D+P+ GY+ LRLW + FDL+ FN GD +
Sbjct: 186 TK--DGR--WEPEFTITGQAWDLPVVGYRNGVAQPLRLWQAT-HAHPFDLTKFNDGDFLR 240
Query: 181 AAEALTNAEKVPICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWE 240
A + NAEK + +LYP D + EGK LRL QQY C+ S+ DI+ R
Sbjct: 241 AEQQGINAEK--LTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHHLAGR---KLH 295
Query: 241 EFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKW 300
E + +Q+NDTHPT+ IPEL+R+LID +SW +AW IT +T AYTNHT++PEALE+W
Sbjct: 296 ELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERW 355
Query: 301 SFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLKETRILEN 351
+L++ LLPRHM+II I+ + + D + K ++ +
Sbjct: 356 DVKLVKGLLPRHMQIINEINTRFKTLVEKTWP-GDEKVWAK----LAVVHD 401
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form,
glycosyltransferase; HET: PLP; 2.80A {Saccharomyces
cerevisiae} SCOP: c.87.1.4
Length = 879
Score = 659 bits (1702), Expect = 0.0
Identities = 186/421 (44%), Positives = 264/421 (62%), Gaps = 23/421 (5%)
Query: 447 EPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLW-PEKFQNKTNGVTPRRWI 505
P + +RMA L +VGSH VNGV E+HSE++ +F +F K + P KF N TNG+TPRRW+
Sbjct: 463 SPERQIRMAFLAIVGSHKVNGVVELHSELIKTTIFKDFIKFYGPSKFVNVTNGITPRRWL 522
Query: 506 RFCNPDLSSILTSWLG--TEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFI 563
+ NP L+ +++ L TE+++ + KL +L K+ ++++ ++ K NNK+++V I
Sbjct: 523 KQANPSLAKLISETLNDPTEEYLLDMAKLTQLEKYVEDKEFLKKWNQVKLNNKIRLVDLI 582
Query: 564 KEKT------GYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEM-----SAVER 612
K++ D +FD+QVKRIHEYKRQ +N+ GI+YRY MK M S E
Sbjct: 583 KKENDGVDIINREYLDDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEV 642
Query: 613 KAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAE 672
K+ +V IFGGK+ Y AK I+K I V VN+D I LLKV+FV DYNVS AE
Sbjct: 643 ARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADIVNNDESIEHLLKVVFVADYNVSKAE 702
Query: 673 LLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGAR 732
++IPAS+LS+HISTAG EASGTSNMKF MNG ++IGT+DGANVEI +E+GE+N FLFG
Sbjct: 703 IIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREIGEDNVFLFGNL 762
Query: 733 AHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADY 789
+ + LR + + V +++SG F N + L+ S++ + DY
Sbjct: 763 SENVEELRYNHQYHPQDLPSSLDSVLSYIESGQFSPENPNEFKPLVDSIKYH-----GDY 817
Query: 790 FLVGKDFPSYLECQEKVDEAYCDQK-RWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 848
+LV DF SYL E VD+ + +Q+ W + S+++ A FSSDR I+EY+ IWN+ P
Sbjct: 818 YLVSDDFESYLATHELVDQEFHNQRSEWLKKSVLSLANVGFFSSDRCIEEYSDTIWNVEP 877
Query: 849 V 849
V
Sbjct: 878 V 878
Score = 544 bits (1405), Expect = 0.0
Identities = 185/360 (51%), Positives = 230/360 (63%), Gaps = 27/360 (7%)
Query: 1 MEFLQGRALLNAIGNLGLTGA-------------YAEALSKLGQSLENVVSQEPDAALGN 47
+EFL GRAL NA+ N+ + AL +LG LE+V+ QEPDA LGN
Sbjct: 104 LEFLMGRALDNALINMKIEDPEDPAASKGKPREMIKGALDELGFKLEDVLDQEPDAGLGN 163
Query: 48 GGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDG-QEEVAEDWLELGNPWEIE 106
GGLGRLA+CF+DSMAT PAWGYGLRY+YG+F Q+I DG Q E + WL GNPWEIE
Sbjct: 164 GGLGRLAACFVDSMATEGIPAWGYGLRYEYGIFAQKI-IDGYQVETPDYWLNSGNPWEIE 222
Query: 107 RNDVSYPVKFYGKIVPGSDGK-----SHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWST 161
RN+V PV FYG + GK S WIGGE + AVAYD P+PG+KT NLRLW
Sbjct: 223 RNEVQIPVTFYGYVDRPEGGKTTLSASQWIGGERVLAVAYDFPVPGFKTSNVNNLRLWQA 282
Query: 162 MVPSEDFDLSAFNAGDHTKAAEALTNAEKVPICYILYPGDESVEGKVLRLKQQYTLCSAS 221
P+ +FDL+ FN GD+ + AE I +LYP D +GK LRLKQQY C+AS
Sbjct: 283 R-PTTEFDLNKFNNGDYKNSVAQQQRAES--ITAVLYPNDNFAQGKELRLKQQYFWCAAS 339
Query: 222 LQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNIT 281
L DI+ RF+K W EFP++VA+Q+NDTHPTL I EL R+L+DL+ L W EAW+I
Sbjct: 340 LHDILRRFKKSKR---PWTEFPDQVAIQLNDTHPTLAIVELQRVLVDLEKLDWHEAWDIV 396
Query: 282 QRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEK 341
+T AYTNHTV+ EALEKW L LLPRH+EII I+ + + ++ D DLL +
Sbjct: 397 TKTFAYTNHTVMQEALEKWPRRLFGHLLPRHLEIIYDINWFFLEDVAKKFP-KDVDLLSR 455
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.5 bits (143), Expect = 4e-09
Identities = 97/723 (13%), Positives = 197/723 (27%), Gaps = 258/723 (35%)
Query: 24 EALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQR 83
LSK + +++++ DA G RL L + LR Y
Sbjct: 44 SILSK--EEIDHII-MSKDAVSG---TLRLFWTLLSKQEEMVQKFVEEVLRINYK----- 92
Query: 84 ITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDI 143
+L +P + E+ S + Y + + + A Y++
Sbjct: 93 ------------FLM--SPIKTEQRQPSMMTRMY------IEQRDRLYNDNQVFA-KYNV 131
Query: 144 PIPGYKTKTTINLRLW-STMVPSEDFDLSA-FNAGDHTKAAEALTNAEKV------PICY 195
+ + LR + P+++ + +G A + + KV I +
Sbjct: 132 SRL----QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC-LSYKVQCKMDFKIFW 186
Query: 196 ILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDT-H 254
+ S E L+ L + +R + S + ++ + +
Sbjct: 187 LNLKNCNSPE---TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 255 PTLCIPELIRILIDLKGLSW-KEAWN---------ITQR--------TVAYTNHTVL--- 293
C L+ +L+++ +AWN +T R + A T H L
Sbjct: 244 EN-C---LL-VLLNV----QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 294 ------PEALE---KW----SFEL---MQKLLPRHMEII-----EMID----------EE 322
E K+ +L + PR + II + + ++
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 323 LVHTIVSEYGTADPDLLEKRLKETRIL-ENVDLPATFADLFVKTKESTDVVPDDELENCD 381
L I S +P K + + +P ++ D +++
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT-------ILLS---LIWFDVIKSDV 404
Query: 382 EEGGPVDEELES---AQEDGVLEEESTDVVPD---DELENCDEEGGPVDEELESEQEDDV 435
V +L ++ +EST +P + + E
Sbjct: 405 MV---VVNKLHKYSLVEKQP---KESTISIPSIYLELKVKLENE---------------- 442
Query: 436 LEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNK 495
+H IV + Y + P+ F +
Sbjct: 443 ---------------------------------YALHRSIV------DHYNI-PKTFDS- 461
Query: 496 TNGVTPRRWIRFCNPDLSSILTSWLG-----TEDWVTNTGKLAELRK-FADNEDLQSQFR 549
+ + P P L S +G E + ++ R F D FR
Sbjct: 462 -DDLIP--------PYLDQYFYSHIGHHLKNIE----HPERMTLFRMVFLD-------FR 501
Query: 550 AAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSA 609
F+++K + + ++N L + YK
Sbjct: 502 ------------FLEQKIRHDSTA-----------WNASGSILNTLQQLKFYK------- 531
Query: 610 VERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVS 669
++ + V A I+ F+ + + DLL++ + +
Sbjct: 532 -----PYICDND----PKYERLVNA--ILDFLPKIEENLICSKYT-DLLRIALMAEDEAI 579
Query: 670 VAE 672
E
Sbjct: 580 FEE 582
Score = 55.2 bits (132), Expect = 8e-08
Identities = 91/702 (12%), Positives = 192/702 (27%), Gaps = 238/702 (33%)
Query: 73 LRYKYG----LFKQRITKDGQEEVAEDWLE-----------LGNPWEIERNDV------S 111
+Y+Y +F+ + + +D + + + + S
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 112 YPVKFYGKIVPGSDGKSH-WIGGEDIKAVAYDIPIPGYKTKTTINLR--LWSTMVPSEDF 168
+ K V ++ ++ + + + P T+ I R L++ +
Sbjct: 74 KQEEMVQKFVEEVLRINYKFL----MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 169 DLSAFNAGDHTKAAEALTNAEKVPICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIAR 228
++S + K +AL +L G GK + +
Sbjct: 130 NVSRLQ--PYLKLRQALLELRPAK--NVLIDGVLGS-GKT-------WVALDVCLS--YK 175
Query: 229 FEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYT 288
+ + + W PE + L L+ L ++ N T R+ +
Sbjct: 176 VQCKMDFKIFWLNLKNC------------NSPETV--LEMLQKLLYQIDPNWTSRSDHSS 221
Query: 289 NHTVLPEALEKWSFELM-QKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLE------K 341
N + +++ L+ K + ++ + V + K
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCL-LV--LLN------VQ-----NAKAWNAFNLSCK 267
Query: 342 RLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLE 401
L TR + D F+ +T + D +
Sbjct: 268 ILLTTRFKQVTD--------FLSAATTTHISLDHH-------------------SMTLTP 300
Query: 402 EESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVG 461
+E + L L+ +D L E + P+ + +
Sbjct: 301 DEVKSL-----LLKY----------LDCRPQD--LPRE----VLTTNPRRLSI------- 332
Query: 462 SHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLG 521
E + + N W L++I+ S L
Sbjct: 333 -------------------IAESIRDGLATWDN---------WKHVNCDKLTTIIESSL- 363
Query: 522 TEDWVTNTGKLAELRK-------FADNEDLQSQ-----FRAAKRNNKMKVV------SFI 563
N + AE RK F + + + + +++ M VV S +
Sbjct: 364 ------NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 564 KE--KTGYSVSPDAMFDIQVKRIHEYK--RQLM---NILG-------------------I 597
++ K P +++VK +EY R ++ NI I
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 598 VY------RYKKMKEMSAV-------ERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDV 644
+ ++M V E+K + G T Q K +I D
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD- 536
Query: 645 GATVNHDPE----IGDLLKVIFVPDYNVSVAELLIPASELSQ 682
+DP+ + +L F+P ++ + ++L +
Sbjct: 537 -----NDPKYERLVNAILD--FLPKIEENL--ICSKYTDLLR 569
Score = 37.5 bits (86), Expect = 0.022
Identities = 61/484 (12%), Positives = 124/484 (25%), Gaps = 146/484 (30%)
Query: 465 VNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRR--WIRFCNPDLSSILTSWLGT 522
V ++ I++ E + ++ +G R W ++ ++
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMS-----KDAVSGT--LRLFWTLLSKQ--EEMVQKFVEE 85
Query: 523 EDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVK 582
LR + + L S + +R M +I+++ V
Sbjct: 86 V-----------LRI--NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 583 RIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFG----GK---AFATYVQAK 635
R+ Y +L L + + V I G GK A + K
Sbjct: 133 RLQPYL-KLRQAL----------------LELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 636 RIVKFITDVG-ATVNHDPEIGDLLKVI------FVPDYNV---SVAELLIPASELSQHIS 685
K + + + +L+++ P++ + + + + +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 686 TAGMEASGT---------SNMKF--AMN-GC-ILIGTLDGANVEIRQEVGEENFFLFGAR 732
N K A N C IL+ T + + L
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL---- 291
Query: 733 AHEIAGLRKERSEGKFVPDARF---------EEVKK-----------FVKSGV-----FG 767
H L + + ++ EV ++ G+ +
Sbjct: 292 DHHSMTLTPDEVKSLL---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 768 SYNYDELM----GSLEGNEGFGQADYFLVGKD---FP-----------------SYLECQ 803
N D+L SL E F FP +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMF---DRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 804 EKVDE--AYCDQKRW---TRMSIMNTAGSSKFSSD-------RTIQEY----ARDIWNII 847
V++ Y ++ + +SI + K + + Y D ++I
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 848 PVEL 851
P L
Sbjct: 466 PPYL 469
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 7e-05
Identities = 61/337 (18%), Positives = 101/337 (29%), Gaps = 120/337 (35%)
Query: 608 SAVERKAKFVPRVCIFGG------------KAFATY---VQ------AKRIVKFITDVGA 646
+ E A+ V IFGG + TY V A+ + + I
Sbjct: 148 AVGEGNAQLVA---IFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 647 TVNHDPEIGDLLKVIFVP------DYNVSVAELLIPASELSQ--HISTAGMEASGTS--N 696
+ ++L+ + P DY +S+ + P + Q H + G +
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIP-ISCPLIGVIQLAHYVVTA-KLLGFTPGE 262
Query: 697 MKFAMNGCILIGTLDG--ANVEIRQEVGEENFF---------LF--GARAHEIAGLR--- 740
++ + G G G V I + E+FF LF G R +E
Sbjct: 263 LRSYLKG--ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 741 -------KERSEGKFVP-------DARFEEVKKFVKSGVFGSYNYDELMGSLEGNE---- 782
E +EG VP + E+V+ +V ++ L +
Sbjct: 321 PSILEDSLENNEG--VPSPMLSISNLTQEQVQDYV----------NKTNSHLPAGKQVEI 368
Query: 783 ----GFGQADYFLV-GKDFPSYLE--CQ--EKVD-EAYCDQKRWTRMSIMNTAGSSKF-- 830
G A +V G P L K + DQ R S S++F
Sbjct: 369 SLVNG---AKNLVVSG--PPQSLYGLNLTLRKAKAPSGLDQSR-IPFSERKLKFSNRFLP 422
Query: 831 ------SS------DRTIQEYARDIWNI------IPV 849
S D ++ ++ + IPV
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Score = 44.7 bits (105), Expect = 1e-04
Identities = 86/560 (15%), Positives = 175/560 (31%), Gaps = 186/560 (33%)
Query: 235 ANVNWEEF----PEKVAVQMNDTHPTLCIPELI-RILIDLKGLSWKEAWNITQRTVAYTN 289
A+ E+F PE D PT EL+ + L Y +
Sbjct: 30 ASQLQEQFNKILPEPTEGFAADDEPT-TPAELVGKFL-------------------GYVS 69
Query: 290 HTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLK----- 344
V P + ++ +++ L E + + +H + ++ + L K +
Sbjct: 70 SLVEPSKVGQFD-QVLNLCL-TEFENCYLEGND-IHALAAKLLQENDTTLVKTKELIKNY 126
Query: 345 -ETRILENVDLP-ATFADLF--VKTKESTDVV-------PD---DELENCDEEGGP-VDE 389
RI+ + + LF V + V D +EL + + V +
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD 186
Query: 390 ELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQ---EDDVLEEEKEAEAVQ 446
++ + E L E + +++ +G + E LE+ + D L
Sbjct: 187 LIKFSAE--TLSELIRTTLDAEKVF---TQGLNILEWLENPSNTPDKDYL-----LSI-- 234
Query: 447 EP---P--QLVRMANLCVV----GSH------AVNGVAEIHSEIVTNEVFNEFYKLWPEK 491
P P ++++A+ V G + G +VT E W
Sbjct: 235 -PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE-TDSWESF 292
Query: 492 FQNKTNGVTPRRWI------RFCNPDLSSILTSWLGTEDWVTN-----------TG-KLA 533
F + +T +I + N L + ED + N +
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSI-----LEDSLENNEGVPSPMLSISNLTQE 347
Query: 534 ELRKFAD--NEDL--QSQFRAAKRNN-KMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYK 588
+++ + + N L Q + N K VV +G P +++
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV------SGP---PQSLY----------- 387
Query: 589 RQLMNILGIVYRYKKMKEMSAVER-KAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGAT 647
G+ +K K S +++ + F ++R +KF
Sbjct: 388 -------GLNLTLRKAKAPSGLDQSRIPF-----------------SERKLKFSNR---- 419
Query: 648 VNHDPEIGDLLKVIFVPDYNVSV---AELLIPASE-LSQHISTAGMEASGTSNMKFAMNG 703
F+P V+ + LL+PAS+ +++ + + + +++
Sbjct: 420 --------------FLP---VASPFHSHLLVPASDLINKDLVKNNVSFNA-KDIQIP--- 458
Query: 704 CILIGTLDGANVEIRQEVGE 723
+ T DG++ +R G
Sbjct: 459 --VYDTFDGSD--LRVLSGS 474
Score = 42.7 bits (100), Expect = 6e-04
Identities = 42/259 (16%), Positives = 80/259 (30%), Gaps = 89/259 (34%)
Query: 172 AFNAGD-HTKAAEALTNAEKV---PICYILYPGDESVEGKVLRLKQQYT-LCSASLQDII 226
+N D H K + + V P+ ++ G E GK R+++ Y+ + ++ D
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK--GK--RIRENYSAMIFETIVDGK 1700
Query: 227 ARFEK------RSGANVNWEEFPEKVAVQMNDTH---PTLCIPELIRILIDLKGLSWKEA 277
+ EK + + + + ++ T P L + E DLK +
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRS-EKGL---LSATQFTQPALTLMEKA-AFEDLK------S 1749
Query: 278 WNITQRTVAYTNHTVLPE--AL----EKWSFE-----------LMQKLLPRH-------- 312
+ + H+ L E AL + S E MQ +PR
Sbjct: 1750 KGLIPADATFAGHS-LGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYG 1808
Query: 313 M------EIIEMIDEELVHTIVSEYGTADPDLLE-------------------------- 340
M + +E + +V G L+E
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNV 1868
Query: 341 -KRLKETRILENVDLPATF 358
+K +I + ++L +
Sbjct: 1869 LNFIKLQKI-DIIELQKSL 1886
Score = 36.6 bits (84), Expect = 0.049
Identities = 40/301 (13%), Positives = 82/301 (27%), Gaps = 103/301 (34%)
Query: 128 SHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWS-------TMVPSEDFDLSAFNAGDHTK 180
+ ++ G DI A+A + T + + P + SA +
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL-----FR 147
Query: 181 AAEALTNAEKVPICYILYPG--------DESVEGKVLRLKQQYTLCSASLQDIIARFEKR 232
A + ++ G +E L+ Y + D+I +
Sbjct: 148 AVG----EGNAQL-VAIFGGQGNTDDYFEE--------LRDLYQTYHVLVGDLIKFSAET 194
Query: 233 ----------------SGANV-NWEEFPEK---------VAVQMNDTHPTLCIPELIRIL 266
G N+ W E P + + P + + +L +
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC----PLIGVIQLAHYV 250
Query: 267 IDLKGLSWKEAWNITQRTVAYTNHT------VLPEALEKW-SF--------ELM------ 305
+ K L + + T H+ V + W SF ++
Sbjct: 251 VTAKLLGFTPG-ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 306 -QKLLPRHMEIIEMIDEELVHTIVSEYGTADP---------DLLEKRLKETRILENVDLP 355
+ P ++++ L + G P + ++ + +T N LP
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNE----GVPSPMLSISNLTQEQVQDYVNKT----NSHLP 361
Query: 356 A 356
A
Sbjct: 362 A 362
Score = 33.1 bits (75), Expect = 0.57
Identities = 28/110 (25%), Positives = 39/110 (35%), Gaps = 17/110 (15%)
Query: 110 VSYPVKFYGKI-VPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDF 168
V+ P F+ + VP SD + + ++ A DI IP Y T +LR+ S +
Sbjct: 423 VASP--FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480
Query: 169 DLSAFNAGDHTKAA--EALTNAEKVPICYILY--PGDESVEGK-VLRLKQ 213
D E T +IL PG S G R K
Sbjct: 481 DCII------RLPVKWETTTQF---KATHILDFGPGGASGLGVLTHRNKD 521
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat
repeat, transcription factor, nucleus; 2.85A
{Saccharomyces cerevisiae}
Length = 649
Score = 34.1 bits (77), Expect = 0.22
Identities = 17/88 (19%), Positives = 36/88 (40%)
Query: 370 DVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELES 429
DV +EL+ D++ D E ++D L+++S D ++ + +E + +S
Sbjct: 263 DVELQNELDELDDDVDDDDLEEVDLEDDDDLDDDSGDDDDENCGNSNEELRSGAADGSQS 322
Query: 430 EQEDDVLEEEKEAEAVQEPPQLVRMANL 457
+ ED + E + + L
Sbjct: 323 DSEDMDIIEGMDGTEEYNVELTQGIKEL 350
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 0.85
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 18/67 (26%)
Query: 294 PEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDL----------LEKRL 343
PE++ KW E Q+ + ++ +D A DL +EK
Sbjct: 84 PESIRKWREE--QR------KRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
Query: 344 KETRILE 350
RI +
Sbjct: 136 INNRIAD 142
Score = 29.7 bits (66), Expect = 2.7
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 374 DDELENCDEEGGPVDEEL-ESAQEDGVLEE--ESTDVVPDDELENCDEEGGPVDEELESE 430
L+ D +++E E A++D LEE + +++E D+ +
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKD--LEEWNQRQS----EQVEKNKINNRIADKAFYQQ 148
Query: 431 QEDDVL 436
+ D++
Sbjct: 149 PDADII 154
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 30.6 bits (68), Expect = 0.88
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 392 ESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQL 451
+A ED E+ +E E + + ++E E + +DD +EE+E E + L
Sbjct: 21 VAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDL 80
Score = 29.5 bits (65), Expect = 2.7
Identities = 20/77 (25%), Positives = 33/77 (42%)
Query: 383 EGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEA 442
E ++ E A E EEE+ D D++ + D++ DEE E E D + + +
Sbjct: 25 EDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLREHF 84
Query: 443 EAVQEPPQLVRMANLCV 459
+ +E LV C
Sbjct: 85 KNTEEGKALVHHYEECA 101
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 31.5 bits (70), Expect = 1.6
Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 6/82 (7%)
Query: 373 PDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQ- 431
E E E + E E + + + E P E + +
Sbjct: 30 SGANTELVSGESEHSTNEADKQNEGEHARENKLE--KAEGVATASETASPASNEAATTET 87
Query: 432 ---EDDVLEEEKEAEAVQEPPQ 450
EEK +E V E P
Sbjct: 88 AEAASAAKPEEKASEVVAETPS 109
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 31.2 bits (71), Expect = 1.7
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 389 EELESAQEDGV-LEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKE 441
+E+++++E L +E D + +E VD + E+D+L E
Sbjct: 419 DEMDTSREIVQQLIDEYHAATRPDYISWGTQEQVDVDGGQKLISEEDLLLEHHH 472
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Length = 630
Score = 30.6 bits (70), Expect = 2.7
Identities = 8/65 (12%), Positives = 17/65 (26%)
Query: 423 VDEELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFN 482
E+ +E E ++ R + + + E E E+
Sbjct: 240 PSPEIVKYTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEKFPEADPYEIIE 299
Query: 483 EFYKL 487
F +
Sbjct: 300 SFNVV 304
>2hp0_A IDS-epimerase; MMGE/PRPD fold, 6 helix bundle, chorismate mutase
like, ISOM; HET: MSE CSO; 1.50A {Agrobacterium
tumefaciens} PDB: 2hp3_A*
Length = 466
Score = 29.7 bits (67), Expect = 4.2
Identities = 6/38 (15%), Positives = 10/38 (26%), Gaps = 2/38 (5%)
Query: 80 FKQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFY 117
E+ + G PW I + K +
Sbjct: 253 ILAMYGAQPGPELFNAMQKFGTPWAIIAPGLYK--KSW 288
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 29.3 bits (66), Expect = 4.4
Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 374 DDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQED 433
+ + E+ + E E E+ + + E EE E+ + +E
Sbjct: 2 EQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEEL 61
Query: 434 DVLE---EEKEAEAVQEPPQLVRMA 455
+ E EA+ + + +R+
Sbjct: 62 AAAKAQIAELEAKLSEMEHRYLRLY 86
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 5.0
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 3/21 (14%)
Query: 24 EALSKLGQSLENVVSQEPDAA 44
+AL KL SL+ D+A
Sbjct: 20 QALKKLQASLK---LYADDSA 37
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 28.9 bits (65), Expect = 5.7
Identities = 12/61 (19%), Positives = 23/61 (37%)
Query: 387 VDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQ 446
EELE+ + + +E EG EE+++E +D + E +
Sbjct: 177 TAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDA 236
Query: 447 E 447
+
Sbjct: 237 Q 237
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 29.3 bits (66), Expect = 5.9
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 359 ADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELEN 415
++F DD E DEE +EE ES + EE + EL +
Sbjct: 326 REVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKED---KELAD 379
Score = 29.3 bits (66), Expect = 6.3
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 378 ENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQ-EDDVL 436
N E V +E+ DD E DEE +EE ES+ E +
Sbjct: 312 GNRFSEEDDVVDEIREVFST---RGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETS 368
Query: 437 EEEKEAEAVQE 447
EEEKE + + +
Sbjct: 369 EEEKEDKELAD 379
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate
aminotransferase; HET: PGU; 1.67A {Thermus thermophilus}
PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Length = 397
Score = 28.7 bits (65), Expect = 9.4
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 9/43 (20%)
Query: 196 ILYPG--------DESVEGKVLRLKQQYTLCSASL-QDIIARF 229
+L PG K+++ KQ L + L Q ++
Sbjct: 239 VLSPGLRVAFAVAHPEALQKLVQAKQGADLHTPMLNQMLVHEL 281
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding
protein, structural genomics center for infectious
disease; 2.10A {Bartonella henselae}
Length = 193
Score = 28.0 bits (62), Expect = 9.6
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 677 ASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQ 719
A H+ T + G +M ++N ILIG L GA+ EIR+
Sbjct: 2 AHHHHHHMGTLEAQTQGPGSMAGSLNKVILIGNL-GADPEIRR 43
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 28.5 bits (63), Expect = 9.8
Identities = 21/149 (14%), Positives = 45/149 (30%), Gaps = 13/149 (8%)
Query: 303 ELMQKLLPRHMEIIE---MIDEELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFA 359
L K++ ++ I++ ++S K+L E I L A
Sbjct: 463 TLQDKIVKEKFAMVAPDVQIEDGKGTILISSEEGETEANNHKKLSEFGIRNGSRLQAD-- 520
Query: 360 DLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEE 419
D +++ ++L D E E + + N ++
Sbjct: 521 DFLQDYTLLINILHSEDLGK--------DVEFEVVGDAPEKVGPKQAEDAAKSITNGSDD 572
Query: 420 GGPVDEELESEQEDDVLEEEKEAEAVQEP 448
G EQ+D ++ + E ++
Sbjct: 573 GAQPSTSTAQEQDDVLIVDSDEEDSSNNA 601
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.396
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,685,187
Number of extensions: 880339
Number of successful extensions: 1983
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1896
Number of HSP's successfully gapped: 57
Length of query: 852
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 750
Effective length of database: 3,853,851
Effective search space: 2890388250
Effective search space used: 2890388250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.8 bits)