Query 003056
Match_columns 852
No_of_seqs 404 out of 3002
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 16:09:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0103 Molecular chaperones H 100.0 3E-126 7E-131 1044.4 64.0 723 1-793 1-727 (727)
2 KOG0100 Molecular chaperones G 100.0 5E-122 1E-126 946.2 56.7 599 2-701 37-644 (663)
3 KOG0104 Molecular chaperones G 100.0 4E-112 1E-116 932.1 67.6 772 2-794 23-837 (902)
4 PTZ00009 heat shock 70 kDa pro 100.0 1E-101 2E-106 916.0 72.7 601 1-700 4-614 (653)
5 PRK13410 molecular chaperone D 100.0 1E-100 2E-105 902.9 70.5 607 1-716 2-621 (668)
6 PTZ00400 DnaK-type molecular c 100.0 1.1E-98 2E-103 889.2 70.1 585 2-698 42-636 (663)
7 PRK13411 molecular chaperone D 100.0 3.3E-98 7E-103 885.1 72.5 588 1-699 2-600 (653)
8 PRK00290 dnaK molecular chaper 100.0 7E-97 2E-101 875.5 73.3 586 1-700 1-597 (627)
9 PLN03184 chloroplast Hsp70; Pr 100.0 7.2E-97 2E-101 874.0 69.2 587 2-699 40-635 (673)
10 PTZ00186 heat shock 70 kDa pre 100.0 6E-96 1E-100 858.6 71.9 586 2-697 28-622 (657)
11 CHL00094 dnaK heat shock prote 100.0 1E-95 2E-100 862.5 71.4 587 2-700 3-599 (621)
12 TIGR02350 prok_dnaK chaperone 100.0 3.4E-95 7E-100 858.8 72.3 583 2-698 1-593 (595)
13 KOG0101 Molecular chaperones H 100.0 1.3E-94 2.9E-99 806.6 50.1 601 1-701 7-615 (620)
14 TIGR01991 HscA Fe-S protein as 100.0 2.9E-92 6.2E-97 827.9 71.2 575 3-696 1-581 (599)
15 PF00012 HSP70: Hsp70 protein; 100.0 5E-92 1.1E-96 839.9 63.7 594 3-699 1-601 (602)
16 PRK05183 hscA chaperone protei 100.0 7.2E-91 1.6E-95 817.4 69.6 575 2-698 20-599 (616)
17 KOG0102 Molecular chaperones m 100.0 4.1E-88 8.9E-93 721.7 44.1 589 2-699 28-626 (640)
18 PRK01433 hscA chaperone protei 100.0 2.9E-85 6.4E-90 762.7 67.2 549 2-698 20-578 (595)
19 COG0443 DnaK Molecular chapero 100.0 3.6E-84 7.7E-89 749.0 56.9 566 2-700 6-578 (579)
20 PRK11678 putative chaperone; P 100.0 9.9E-55 2.2E-59 489.9 37.3 336 3-379 2-447 (450)
21 PRK13928 rod shape-determining 100.0 9.9E-38 2.1E-42 344.3 32.4 307 4-380 6-324 (336)
22 PRK13929 rod-share determining 100.0 2.4E-37 5.2E-42 340.2 30.8 305 3-377 6-324 (335)
23 PRK13927 rod shape-determining 100.0 1.2E-34 2.7E-39 320.0 30.0 305 3-379 7-324 (334)
24 TIGR00904 mreB cell shape dete 100.0 4.6E-34 1E-38 314.9 30.6 305 4-379 5-327 (333)
25 PRK13930 rod shape-determining 100.0 4.6E-33 9.9E-38 307.9 33.7 307 4-380 11-329 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 8.4E-31 1.8E-35 281.3 21.0 306 3-378 3-320 (326)
27 COG1077 MreB Actin-like ATPase 100.0 2.3E-28 5.1E-33 251.1 27.2 310 2-381 7-333 (342)
28 TIGR02529 EutJ ethanolamine ut 100.0 3.8E-28 8.2E-33 253.3 20.6 200 115-375 39-238 (239)
29 PRK15080 ethanolamine utilizat 99.9 6.9E-26 1.5E-30 240.6 27.7 202 115-377 66-267 (267)
30 TIGR01174 ftsA cell division p 99.9 6.2E-22 1.4E-26 221.6 26.9 194 151-376 158-371 (371)
31 PRK09472 ftsA cell division pr 99.9 2.3E-20 5E-25 211.4 27.1 195 154-379 169-388 (420)
32 COG0849 ftsA Cell division ATP 99.8 8.1E-17 1.8E-21 177.5 25.6 320 3-380 8-381 (418)
33 COG4820 EutJ Ethanolamine util 99.6 8.1E-16 1.8E-20 146.9 8.2 197 120-377 76-272 (277)
34 cd00012 ACTIN Actin; An ubiqui 99.6 1.7E-14 3.7E-19 161.9 15.8 217 137-379 95-347 (371)
35 PRK13917 plasmid segregation p 99.6 6E-13 1.3E-17 146.7 25.4 212 136-381 109-338 (344)
36 smart00268 ACTIN Actin. ACTIN 99.6 3.7E-14 8E-19 159.4 14.9 299 2-379 2-347 (373)
37 PTZ00280 Actin-related protein 99.3 3E-10 6.4E-15 129.2 25.5 206 138-356 103-337 (414)
38 PF11104 PilM_2: Type IV pilus 99.3 8.4E-11 1.8E-15 130.2 18.4 182 151-377 136-339 (340)
39 TIGR01175 pilM type IV pilus a 99.3 4.1E-10 8.8E-15 125.5 22.9 165 150-359 142-310 (348)
40 PF00022 Actin: Actin; InterP 99.2 5.7E-11 1.2E-15 134.7 14.3 308 2-380 5-368 (393)
41 TIGR03739 PRTRC_D PRTRC system 99.2 1.3E-09 2.8E-14 119.5 22.3 208 136-377 101-318 (320)
42 PTZ00281 actin; Provisional 99.1 7.7E-10 1.7E-14 124.1 17.0 217 137-378 101-349 (376)
43 PTZ00452 actin; Provisional 99.1 2.3E-09 5.1E-14 119.9 19.1 216 137-378 100-348 (375)
44 PTZ00004 actin-2; Provisional 99.1 2.9E-09 6.4E-14 119.6 18.5 217 137-378 101-351 (378)
45 PTZ00466 actin-like protein; P 99.1 2.9E-09 6.2E-14 119.3 17.1 216 137-378 106-353 (380)
46 COG4972 PilM Tfp pilus assembl 99.0 3.9E-07 8.5E-12 95.3 27.4 177 153-373 151-328 (354)
47 TIGR00241 CoA_E_activ CoA-subs 98.9 1.4E-07 3E-12 99.8 19.0 170 169-376 73-248 (248)
48 PF06406 StbA: StbA protein; 98.8 5.3E-08 1.1E-12 106.6 14.9 173 166-374 141-316 (318)
49 KOG0679 Actin-related protein 98.8 4.4E-07 9.5E-12 96.1 19.5 116 116-245 86-202 (426)
50 PRK10719 eutA reactivating fac 98.5 5.8E-07 1.3E-11 99.7 11.8 163 138-344 89-268 (475)
51 COG5277 Actin and related prot 98.5 3E-06 6.4E-11 95.8 17.2 98 137-245 106-204 (444)
52 TIGR03192 benz_CoA_bzdQ benzoy 98.5 7.1E-05 1.5E-09 79.3 25.3 47 333-379 241-288 (293)
53 PF07520 SrfB: Virulence facto 98.5 5.5E-05 1.2E-09 90.7 26.7 330 47-381 331-836 (1002)
54 TIGR03286 methan_mark_15 putat 98.3 8.3E-05 1.8E-09 81.8 23.1 46 333-378 357-402 (404)
55 COG1924 Activator of 2-hydroxy 98.3 0.00011 2.4E-09 78.8 22.0 178 169-379 211-390 (396)
56 TIGR02259 benz_CoA_red_A benzo 98.1 0.00017 3.7E-09 78.4 18.7 177 169-377 249-432 (432)
57 PRK10331 L-fuculokinase; Provi 98.1 0.00032 7E-09 81.4 22.5 84 297-384 357-441 (470)
58 COG1070 XylB Sugar (pentulose 98.1 0.00011 2.3E-09 86.0 18.5 82 297-381 369-450 (502)
59 TIGR02628 fuculo_kin_coli L-fu 98.0 0.00036 7.9E-09 80.9 21.0 85 296-383 360-444 (465)
60 TIGR02261 benz_CoA_red_D benzo 97.9 0.0023 4.9E-08 67.1 22.1 44 334-377 214-262 (262)
61 PRK13317 pantothenate kinase; 97.9 0.0039 8.6E-08 66.5 23.5 48 331-378 222-273 (277)
62 TIGR01314 gntK_FGGY gluconate 97.8 0.0028 6.1E-08 74.4 23.9 81 299-383 371-452 (505)
63 PF06277 EutA: Ethanolamine ut 97.8 0.00063 1.4E-08 75.9 16.9 88 140-234 88-178 (473)
64 COG4457 SrfB Uncharacterized p 97.7 0.004 8.8E-08 70.6 20.0 85 294-380 743-847 (1014)
65 PF08841 DDR: Diol dehydratase 97.6 0.0013 2.8E-08 67.7 13.9 189 161-377 106-329 (332)
66 KOG0676 Actin and related prot 97.6 0.00079 1.7E-08 73.8 12.8 91 138-244 100-192 (372)
67 PRK15027 xylulokinase; Provisi 97.1 0.018 4E-07 67.1 17.9 85 297-384 355-439 (484)
68 KOG0797 Actin-related protein 96.9 0.0076 1.7E-07 66.8 11.3 122 110-244 195-322 (618)
69 COG1069 AraB Ribulose kinase [ 96.7 0.11 2.5E-06 58.8 19.2 214 155-383 233-482 (544)
70 TIGR01234 L-ribulokinase L-rib 96.7 0.028 6E-07 66.5 15.0 83 297-383 404-487 (536)
71 PF02782 FGGY_C: FGGY family o 96.5 0.0029 6.4E-08 64.2 5.0 48 331-379 149-196 (198)
72 COG4819 EutA Ethanolamine util 96.2 0.033 7.1E-07 58.7 10.5 83 140-234 90-180 (473)
73 PF01869 BcrAD_BadFG: BadF/Bad 96.2 0.86 1.9E-05 48.7 21.7 69 306-377 198-271 (271)
74 KOG0680 Actin-related protein 96.2 0.24 5.2E-06 52.3 16.3 102 137-243 93-198 (400)
75 TIGR01315 5C_CHO_kinase FGGY-f 95.9 0.023 4.9E-07 67.3 8.6 86 297-383 409-494 (541)
76 PLN02669 xylulokinase 95.7 0.025 5.5E-07 66.9 8.2 77 298-379 416-492 (556)
77 PF14450 FtsA: Cell division p 95.7 0.023 5E-07 52.7 6.1 48 196-243 1-53 (120)
78 KOG0677 Actin-related protein 95.7 0.12 2.7E-06 52.7 11.4 194 137-355 101-318 (389)
79 PRK10854 exopolyphosphatase; P 95.5 0.35 7.5E-06 56.8 16.4 75 154-237 100-175 (513)
80 PRK00047 glpK glycerol kinase; 95.3 0.041 9E-07 64.4 7.7 81 298-383 372-454 (498)
81 PLN02295 glycerol kinase 95.3 0.059 1.3E-06 63.3 9.0 53 331-384 412-464 (512)
82 TIGR01311 glycerol_kin glycero 95.2 0.038 8.3E-07 64.6 7.1 82 297-383 367-450 (493)
83 TIGR02627 rhamnulo_kin rhamnul 95.1 0.077 1.7E-06 61.4 9.3 83 297-384 355-438 (454)
84 PRK11031 guanosine pentaphosph 95.1 0.49 1.1E-05 55.2 16.0 77 153-238 94-171 (496)
85 TIGR01312 XylB D-xylulose kina 95.1 0.054 1.2E-06 63.2 8.0 81 298-383 359-441 (481)
86 PF14574 DUF4445: Domain of un 95.1 0.91 2E-05 51.2 17.1 60 292-352 289-348 (412)
87 KOG2517 Ribulose kinase and re 95.1 0.23 5E-06 56.8 12.4 74 307-384 393-466 (516)
88 PRK04123 ribulokinase; Provisi 95.0 0.049 1.1E-06 64.7 7.4 81 298-383 408-490 (548)
89 PRK10640 rhaB rhamnulokinase; 94.9 0.098 2.1E-06 60.8 9.5 81 299-384 345-426 (471)
90 PTZ00294 glycerol kinase-like 94.8 0.068 1.5E-06 62.7 7.8 80 299-383 376-457 (504)
91 PF01968 Hydantoinase_A: Hydan 94.7 0.049 1.1E-06 58.8 6.0 68 306-376 216-284 (290)
92 PRK10939 autoinducer-2 (AI-2) 94.6 0.11 2.3E-06 61.4 8.9 81 299-383 379-460 (520)
93 TIGR03706 exo_poly_only exopol 94.5 0.73 1.6E-05 50.2 14.4 75 154-237 88-163 (300)
94 TIGR00744 ROK_glcA_fam ROK fam 94.5 4.8 0.00011 44.0 21.1 45 162-211 96-140 (318)
95 TIGR00555 panK_eukar pantothen 94.2 1.6 3.4E-05 46.6 15.7 46 330-375 229-278 (279)
96 KOG2531 Sugar (pentulose and h 94.0 0.14 3E-06 56.6 7.3 55 324-379 435-489 (545)
97 COG0248 GppA Exopolyphosphatas 93.7 0.95 2.1E-05 52.3 13.8 57 154-213 92-148 (492)
98 PRK09604 UGMP family protein; 93.6 6.7 0.00014 43.3 19.9 47 331-377 254-306 (332)
99 COG1548 Predicted transcriptio 93.4 0.36 7.8E-06 49.5 8.5 73 122-212 76-148 (330)
100 COG4012 Uncharacterized protei 93.1 7 0.00015 40.5 17.0 89 144-246 186-277 (342)
101 KOG0681 Actin-related protein 92.8 0.76 1.7E-05 52.0 10.7 98 139-245 118-216 (645)
102 smart00842 FtsA Cell division 92.8 0.57 1.2E-05 47.1 9.2 28 152-179 158-185 (187)
103 PRK05082 N-acetylmannosamine k 92.4 18 0.0004 38.9 22.6 48 331-378 233-287 (291)
104 PTZ00297 pantothenate kinase; 92.0 16 0.00034 48.3 22.7 49 329-377 1389-1444(1452)
105 KOG0100 Molecular chaperones G 90.5 1 2.2E-05 49.0 8.2 53 730-794 591-643 (663)
106 PF02541 Ppx-GppA: Ppx/GppA ph 90.3 1.3 2.9E-05 47.7 9.4 105 118-238 40-151 (285)
107 PLN02666 5-oxoprolinase 89.3 4.4 9.5E-05 52.3 14.0 76 298-376 454-531 (1275)
108 KOG0681 Actin-related protein 88.7 0.39 8.5E-06 54.1 3.7 65 315-379 540-614 (645)
109 PRK09605 bifunctional UGMP fam 88.6 59 0.0013 38.5 23.7 50 332-381 246-301 (535)
110 PRK09698 D-allose kinase; Prov 88.3 41 0.00089 36.4 23.7 43 163-211 104-146 (302)
111 PTZ00400 DnaK-type molecular c 88.3 1.7 3.6E-05 52.8 9.1 68 707-792 569-636 (663)
112 PF03702 UPF0075: Uncharacteri 88.0 1.3 2.8E-05 49.2 7.2 71 303-378 259-336 (364)
113 PRK09557 fructokinase; Reviewe 87.7 45 0.00097 36.1 22.9 44 163-211 96-139 (301)
114 PRK09585 anmK anhydro-N-acetyl 87.4 5.2 0.00011 44.5 11.4 69 307-378 265-337 (365)
115 PF07318 DUF1464: Protein of u 87.4 11 0.00024 41.1 13.6 53 330-383 259-319 (343)
116 TIGR03723 bact_gcp putative gl 87.3 24 0.00052 38.6 16.6 55 315-374 248-308 (314)
117 PRK00290 dnaK molecular chaper 86.7 2 4.4E-05 51.9 8.6 67 707-791 528-594 (627)
118 COG2192 Predicted carbamoyl tr 86.2 74 0.0016 37.0 21.6 209 163-381 110-337 (555)
119 PTZ00009 heat shock 70 kDa pro 86.1 5.2 0.00011 48.5 11.6 75 706-793 539-613 (653)
120 smart00732 YqgFc Likely ribonu 84.8 0.81 1.8E-05 40.5 2.9 21 1-21 1-21 (99)
121 PRK14878 UGMP family protein; 84.6 68 0.0015 35.2 19.7 40 332-371 242-287 (323)
122 TIGR02350 prok_dnaK chaperone 84.3 3.2 7E-05 49.8 8.7 67 707-791 526-592 (595)
123 PTZ00107 hexokinase; Provision 83.8 44 0.00096 38.6 17.0 81 300-381 370-461 (464)
124 COG2377 Predicted molecular ch 83.8 9.7 0.00021 41.7 11.0 165 193-380 162-344 (371)
125 PLN03184 chloroplast Hsp70; Pr 83.4 5.5 0.00012 48.4 10.1 67 707-791 567-633 (673)
126 COG0554 GlpK Glycerol kinase [ 82.6 3.7 8.1E-05 46.4 7.5 83 298-384 371-454 (499)
127 PRK13411 molecular chaperone D 82.1 5.6 0.00012 48.3 9.5 69 707-791 530-598 (653)
128 PLN02939 transferase, transfer 82.0 34 0.00073 42.8 15.9 179 598-781 237-426 (977)
129 PF03652 UPF0081: Uncharacteri 80.5 1.7 3.7E-05 41.2 3.4 22 1-22 1-22 (135)
130 PTZ00340 O-sialoglycoprotein e 79.7 1.1E+02 0.0023 34.0 17.8 39 312-355 249-287 (345)
131 PF08735 DUF1786: Putative pyr 79.1 25 0.00055 36.8 11.7 97 134-238 111-209 (254)
132 PLN02596 hexokinase-like 78.0 1.4E+02 0.0031 34.7 20.4 82 300-382 392-486 (490)
133 KOG1385 Nucleoside phosphatase 75.9 11 0.00023 41.9 8.2 77 110-212 152-231 (453)
134 KOG0104 Molecular chaperones G 75.2 12 0.00026 44.4 8.8 62 692-755 647-709 (902)
135 CHL00094 dnaK heat shock prote 75.1 8.8 0.00019 46.3 8.3 67 707-791 530-596 (621)
136 PRK14101 bifunctional glucokin 74.9 93 0.002 37.8 17.0 18 3-20 20-37 (638)
137 COG5026 Hexokinase [Carbohydra 74.8 14 0.0003 41.4 8.8 18 2-19 76-93 (466)
138 PF02543 CmcH_NodU: Carbamoylt 74.8 28 0.00061 38.8 11.5 82 296-382 131-216 (360)
139 TIGR03281 methan_mark_12 putat 74.5 10 0.00022 40.5 7.4 85 297-383 222-315 (326)
140 PF00012 HSP70: Hsp70 protein; 71.4 15 0.00033 44.0 9.3 74 701-791 526-599 (602)
141 KOG0101 Molecular chaperones H 71.0 8.8 0.00019 45.2 6.6 52 730-793 562-613 (620)
142 PLN02920 pantothenate kinase 1 70.5 1.4E+02 0.003 33.5 15.3 49 330-378 296-351 (398)
143 PF00370 FGGY_N: FGGY family o 70.5 3.8 8.2E-05 43.0 3.3 19 3-21 2-20 (245)
144 COG0145 HyuA N-methylhydantoin 70.3 5.6 0.00012 47.9 5.0 42 167-212 255-296 (674)
145 PF07462 MSP1_C: Merozoite sur 70.1 2.2E+02 0.0047 33.1 19.5 62 731-794 206-267 (574)
146 TIGR03722 arch_KAE1 universal 70.0 1.8E+02 0.0038 32.0 19.7 41 332-372 243-289 (322)
147 COG1940 NagC Transcriptional r 69.2 62 0.0013 35.2 12.7 39 163-205 106-144 (314)
148 PF11593 Med3: Mediator comple 68.9 27 0.0006 38.1 9.2 46 660-707 9-54 (379)
149 PRK00109 Holliday junction res 66.7 5.3 0.00012 38.0 3.1 21 1-21 4-24 (138)
150 COG0816 Predicted endonuclease 65.9 5.9 0.00013 37.7 3.2 21 1-21 2-22 (141)
151 PTZ00288 glucokinase 1; Provis 65.4 33 0.00071 38.9 9.6 19 2-20 27-45 (405)
152 PLN02362 hexokinase 65.4 24 0.00053 41.1 8.7 33 151-183 206-240 (509)
153 PF00349 Hexokinase_1: Hexokin 64.5 20 0.00044 36.6 7.0 52 193-246 62-117 (206)
154 TIGR00329 gcp_kae1 metallohydr 64.0 1.7E+02 0.0036 31.9 14.5 39 312-355 244-282 (305)
155 PLN02405 hexokinase 64.0 24 0.00052 41.0 8.2 56 149-211 204-261 (497)
156 cd06007 R3H_DEXH_helicase R3H 63.3 20 0.00044 28.6 5.3 30 139-168 16-45 (59)
157 PRK02224 chromosome segregatio 63.0 1E+02 0.0023 38.9 14.6 71 597-668 145-215 (880)
158 KOG1924 RhoA GTPase effector D 62.9 2.8E+02 0.0061 33.7 16.2 36 693-728 410-445 (1102)
159 PRK03011 butyrate kinase; Prov 62.3 14 0.0003 41.2 5.8 46 331-376 295-344 (358)
160 PRK00976 hypothetical protein; 59.9 21 0.00046 38.9 6.5 50 331-382 263-314 (326)
161 PTZ00294 glycerol kinase-like 59.5 8.1 0.00017 45.4 3.6 20 3-22 4-23 (504)
162 cd00529 RuvC_resolvase Hollida 58.9 89 0.0019 30.2 10.2 141 195-373 1-148 (154)
163 TIGR00143 hypF [NiFe] hydrogen 58.8 26 0.00055 42.9 7.6 48 331-378 658-711 (711)
164 PRK13410 molecular chaperone D 58.2 40 0.00087 41.0 9.2 68 707-789 530-598 (668)
165 cd02640 R3H_NRF R3H domain of 56.1 34 0.00074 27.4 5.4 42 126-168 5-46 (60)
166 TIGR03123 one_C_unchar_1 proba 56.0 8.1 0.00018 42.1 2.5 19 194-212 128-146 (318)
167 KOG2708 Predicted metalloprote 55.9 78 0.0017 32.4 9.1 55 297-356 224-279 (336)
168 PF14450 FtsA: Cell division p 55.6 16 0.00034 33.8 4.1 20 3-22 1-20 (120)
169 COG0533 QRI7 Metal-dependent p 55.0 3.3E+02 0.0071 30.0 17.5 53 298-355 229-285 (342)
170 PLN02914 hexokinase 54.7 70 0.0015 37.2 9.9 58 149-213 204-263 (490)
171 PRK13318 pantothenate kinase; 54.5 12 0.00026 39.7 3.5 20 3-22 2-21 (258)
172 PRK07058 acetate kinase; Provi 53.8 74 0.0016 35.7 9.5 47 306-356 297-344 (396)
173 PRK13310 N-acetyl-D-glucosamin 53.7 2.1E+02 0.0046 30.8 13.3 45 162-211 95-139 (303)
174 PRK13321 pantothenate kinase; 53.1 13 0.00027 39.5 3.4 19 3-21 2-20 (256)
175 PRK05183 hscA chaperone protei 52.8 58 0.0013 39.3 9.4 63 710-790 535-597 (616)
176 PRK10939 autoinducer-2 (AI-2) 52.5 11 0.00023 44.6 3.0 20 2-21 4-23 (520)
177 PRK00039 ruvC Holliday junctio 52.5 11 0.00025 36.8 2.7 19 1-19 2-20 (164)
178 PRK15027 xylulokinase; Provisi 52.3 10 0.00023 44.2 2.9 19 3-21 2-20 (484)
179 COG2441 Predicted butyrate kin 51.5 1.1E+02 0.0024 32.3 9.6 53 330-383 272-336 (374)
180 PRK01433 hscA chaperone protei 51.1 54 0.0012 39.3 8.7 67 711-791 514-584 (595)
181 PLN02295 glycerol kinase 50.6 12 0.00026 44.1 3.0 20 2-21 1-20 (512)
182 PRK04123 ribulokinase; Provisi 49.7 15 0.00031 43.8 3.6 17 3-19 5-21 (548)
183 TIGR01234 L-ribulokinase L-rib 49.1 16 0.00034 43.3 3.7 18 2-19 2-19 (536)
184 TIGR01315 5C_CHO_kinase FGGY-f 49.1 15 0.00032 43.7 3.4 19 3-21 2-20 (541)
185 PF12238 MSA-2c: Merozoite sur 48.4 64 0.0014 32.6 7.2 10 633-642 14-23 (205)
186 TIGR01311 glycerol_kin glycero 46.4 17 0.00037 42.5 3.4 20 2-21 2-21 (493)
187 PRK00047 glpK glycerol kinase; 46.2 17 0.00037 42.6 3.4 20 2-21 6-25 (498)
188 PLN02377 3-ketoacyl-CoA syntha 44.9 50 0.0011 38.6 6.8 73 302-374 164-240 (502)
189 COG1521 Pantothenate kinase ty 44.5 1.5E+02 0.0033 31.2 9.7 118 173-344 108-225 (251)
190 PF14574 DUF4445: Domain of un 43.0 1.1E+02 0.0024 34.8 8.9 56 303-358 55-110 (412)
191 PF08580 KAR9: Yeast cortical 42.7 1.8E+02 0.004 35.4 11.3 69 710-779 106-175 (683)
192 PF13941 MutL: MutL protein 42.7 18 0.0004 41.4 2.8 34 2-39 1-36 (457)
193 KOG0678 Actin-related protein 41.7 3.3E+02 0.0072 29.7 11.5 99 139-244 108-209 (415)
194 KOG1369 Hexokinase [Carbohydra 40.1 72 0.0016 36.7 6.9 64 145-215 186-252 (474)
195 COG3426 Butyrate kinase [Energ 40.0 76 0.0017 33.7 6.4 49 327-375 292-344 (358)
196 COG4296 Uncharacterized protei 39.1 66 0.0014 29.9 5.1 23 663-685 90-112 (156)
197 PF06840 DUF1241: Protein of u 38.5 1.9E+02 0.0041 28.0 8.4 33 686-720 12-44 (154)
198 PF07106 TBPIP: Tat binding pr 38.5 1.3E+02 0.0029 29.4 7.9 95 647-751 67-161 (169)
199 cd00529 RuvC_resolvase Hollida 38.2 26 0.00055 34.0 2.7 17 3-19 2-18 (154)
200 COG2971 Predicted N-acetylgluc 38.0 5.5E+02 0.012 27.8 17.3 64 309-379 227-291 (301)
201 cd02639 R3H_RRM R3H domain of 37.7 57 0.0012 26.2 4.0 30 139-168 17-46 (60)
202 PF03962 Mnd1: Mnd1 family; I 37.6 4.4E+02 0.0095 26.5 13.0 101 596-728 57-157 (188)
203 PF06008 Laminin_I: Laminin Do 37.4 5.2E+02 0.011 27.3 14.0 18 651-668 152-169 (264)
204 cd02641 R3H_Smubp-2_like R3H d 37.2 89 0.0019 25.0 5.2 30 139-168 17-46 (60)
205 KOG1369 Hexokinase [Carbohydra 37.2 2.1E+02 0.0046 33.0 10.0 31 187-217 78-109 (474)
206 PF02801 Ketoacyl-synt_C: Beta 36.8 43 0.00092 30.7 3.8 45 312-356 25-71 (119)
207 PF02075 RuvC: Crossover junct 36.5 2.5E+02 0.0053 27.0 9.2 29 196-224 1-29 (149)
208 PLN02902 pantothenate kinase 36.3 3.2E+02 0.007 33.9 11.8 48 330-378 345-400 (876)
209 TIGR01991 HscA Fe-S protein as 36.3 1.8E+02 0.0039 35.0 10.0 45 731-790 537-581 (599)
210 PRK00039 ruvC Holliday junctio 36.1 3.6E+02 0.0078 26.4 10.3 148 195-381 3-156 (164)
211 PF06705 SF-assemblin: SF-asse 35.4 5.3E+02 0.011 27.0 12.3 90 653-744 122-213 (247)
212 PLN02669 xylulokinase 35.3 33 0.00071 40.9 3.5 19 624-642 420-438 (556)
213 cd02646 R3H_G-patch R3H domain 35.2 84 0.0018 24.8 4.7 41 124-167 3-43 (58)
214 KOG4603 TBP-1 interacting prot 35.1 1.8E+02 0.0039 28.3 7.6 71 679-749 90-166 (201)
215 PF04848 Pox_A22: Poxvirus A22 34.7 55 0.0012 31.2 4.2 20 1-20 1-20 (143)
216 PF06160 EzrA: Septation ring 34.6 8.2E+02 0.018 29.1 15.0 117 600-719 114-239 (560)
217 PRK13331 pantothenate kinase; 34.4 39 0.00085 35.6 3.5 22 1-22 7-28 (251)
218 KOG2150 CCR4-NOT transcription 34.4 2.3E+02 0.005 33.1 9.7 29 638-671 40-68 (575)
219 KOG0250 DNA repair protein RAD 34.2 9.5E+02 0.021 30.6 15.3 49 740-788 823-883 (1074)
220 PF00480 ROK: ROK family; Int 33.7 2E+02 0.0043 28.0 8.4 89 112-211 30-134 (179)
221 PF09763 Sec3_C: Exocyst compl 33.6 6.4E+02 0.014 31.0 14.4 119 654-785 39-164 (701)
222 PF06785 UPF0242: Uncharacteri 32.7 3E+02 0.0065 29.9 9.5 56 734-789 161-221 (401)
223 PRK00292 glk glucokinase; Prov 32.7 39 0.00084 36.9 3.3 19 1-19 1-20 (316)
224 TIGR00250 RNAse_H_YqgF RNAse H 32.2 29 0.00064 32.5 2.0 17 4-20 1-17 (130)
225 PTZ00186 heat shock 70 kDa pre 32.2 3.1E+02 0.0068 33.4 11.2 68 707-791 555-622 (657)
226 cd00176 SPEC Spectrin repeats, 31.8 4.1E+02 0.0089 26.0 10.6 39 747-789 118-156 (213)
227 KOG3958 Putative dynamitin [Cy 31.6 3.8E+02 0.0083 28.6 9.9 100 672-788 270-369 (371)
228 TIGR03185 DNA_S_dndD DNA sulfu 31.3 3.8E+02 0.0081 32.6 11.8 66 597-666 369-435 (650)
229 PLN02854 3-ketoacyl-CoA syntha 31.1 1.1E+02 0.0023 36.0 6.6 55 304-358 182-237 (521)
230 PRK04863 mukB cell division pr 31.1 1.5E+03 0.032 30.7 19.5 97 653-756 363-463 (1486)
231 COG5665 NOT5 CCR4-NOT transcri 31.1 3.9E+02 0.0085 29.4 10.1 19 653-671 40-58 (548)
232 PF07765 KIP1: KIP1-like prote 31.0 79 0.0017 26.4 3.9 54 665-723 13-71 (74)
233 KOG0996 Structural maintenance 31.0 7.6E+02 0.016 31.8 13.7 31 676-706 473-503 (1293)
234 PF00349 Hexokinase_1: Hexokin 30.7 45 0.00098 34.0 3.2 34 149-182 167-203 (206)
235 PRK13324 pantothenate kinase; 30.5 49 0.0011 35.1 3.5 20 3-22 2-21 (258)
236 PLN03173 chalcone synthase; Pr 30.4 1.3E+02 0.0028 34.0 7.1 51 308-358 100-151 (391)
237 PRK13326 pantothenate kinase; 30.2 50 0.0011 35.1 3.5 21 2-22 7-27 (262)
238 TIGR00067 glut_race glutamate 29.2 1.1E+02 0.0024 32.2 6.0 41 331-374 172-212 (251)
239 KOG0103 Molecular chaperones H 28.6 1.8E+02 0.0039 34.9 7.7 65 624-697 651-725 (727)
240 COG5026 Hexokinase [Carbohydra 28.5 62 0.0014 36.5 3.9 32 192-223 73-105 (466)
241 PRK03918 chromosome segregatio 28.4 1.3E+03 0.028 29.1 17.8 12 336-347 27-40 (880)
242 KOG0517 Beta-spectrin [Cytoske 27.8 1.5E+03 0.032 31.1 15.6 52 735-786 950-1001(2473)
243 TIGR02707 butyr_kinase butyrat 27.5 76 0.0016 35.3 4.5 44 331-374 293-340 (351)
244 PF06160 EzrA: Septation ring 27.5 1.1E+03 0.023 28.2 14.3 44 716-760 361-404 (560)
245 PLN03170 chalcone synthase; Pr 27.5 2.8E+02 0.0061 31.4 9.2 52 307-358 103-155 (401)
246 TIGR02169 SMC_prok_A chromosom 27.3 6.9E+02 0.015 32.5 14.1 45 597-641 149-193 (1164)
247 PF02075 RuvC: Crossover junct 26.8 32 0.00069 33.2 1.2 18 3-20 1-18 (149)
248 PLN03172 chalcone synthase fam 26.5 1.5E+02 0.0032 33.6 6.6 55 304-358 96-151 (393)
249 COG4012 Uncharacterized protei 26.4 1.7E+02 0.0037 30.8 6.3 72 195-273 2-96 (342)
250 PRK12440 acetate kinase; Revie 26.4 3.9E+02 0.0084 30.2 9.6 46 307-356 300-346 (397)
251 COG4755 Uncharacterized protei 26.4 5.3E+02 0.012 24.0 9.1 83 655-751 11-99 (151)
252 COG3894 Uncharacterized metal- 26.2 1.9E+02 0.0041 33.3 7.1 47 193-239 163-210 (614)
253 PF02685 Glucokinase: Glucokin 26.2 8.6E+02 0.019 26.6 12.3 202 164-380 91-316 (316)
254 PRK04863 mukB cell division pr 25.6 1.8E+03 0.039 29.9 19.4 61 598-670 276-339 (1486)
255 PRK12704 phosphodiesterase; Pr 25.4 1E+03 0.022 28.1 13.4 60 680-739 98-157 (520)
256 TIGR00634 recN DNA repair prot 25.4 1.2E+03 0.026 27.7 19.0 23 700-722 295-317 (563)
257 PRK04778 septation ring format 25.0 1.2E+03 0.027 27.7 17.9 167 600-788 118-294 (569)
258 PF08006 DUF1700: Protein of u 24.0 1.3E+02 0.0028 29.8 5.1 56 632-695 5-61 (181)
259 COG1940 NagC Transcriptional r 23.8 3E+02 0.0064 29.8 8.3 54 192-245 4-57 (314)
260 PTZ00107 hexokinase; Provision 23.5 2.7E+02 0.0057 32.3 8.0 24 193-216 73-96 (464)
261 PLN03168 chalcone synthase; Pr 23.4 1.7E+02 0.0037 33.1 6.4 56 303-358 94-150 (389)
262 KOG2517 Ribulose kinase and re 23.4 1E+02 0.0022 35.9 4.6 17 3-19 8-24 (516)
263 PRK07515 3-oxoacyl-(acyl carri 23.3 78 0.0017 35.5 3.7 48 307-356 266-313 (372)
264 KOG1029 Endocytic adaptor prot 22.9 1.1E+03 0.024 28.9 12.5 10 623-632 398-407 (1118)
265 TIGR00671 baf pantothenate kin 22.8 73 0.0016 33.4 3.1 45 300-344 175-219 (243)
266 PF09286 Pro-kuma_activ: Pro-k 22.8 1.3E+02 0.0029 28.4 4.7 47 627-673 26-76 (143)
267 PF12401 DUF3662: Protein of u 22.5 4.7E+02 0.01 24.0 7.9 86 236-330 6-94 (116)
268 KOG0797 Actin-related protein 22.4 28 0.00061 39.7 -0.1 50 332-381 527-591 (618)
269 PRK13320 pantothenate kinase; 22.4 88 0.0019 32.9 3.6 20 3-22 4-23 (244)
270 TIGR02627 rhamnulo_kin rhamnul 22.4 43 0.00094 38.7 1.4 19 624-642 360-378 (454)
271 PF13941 MutL: MutL protein 22.3 1.9E+02 0.0041 33.3 6.5 46 196-241 2-48 (457)
272 TIGR03722 arch_KAE1 universal 22.0 2.3E+02 0.0051 31.0 7.0 63 308-371 43-111 (322)
273 TIGR01312 XylB D-xylulose kina 21.9 50 0.0011 38.4 1.8 17 4-20 1-17 (481)
274 PRK00865 glutamate racemase; P 21.9 2.2E+02 0.0047 30.2 6.5 42 331-375 177-218 (261)
275 PLN02192 3-ketoacyl-CoA syntha 21.7 2.3E+02 0.0051 33.2 7.1 56 303-358 169-225 (511)
276 PF02970 TBCA: Tubulin binding 21.7 3E+02 0.0065 24.0 6.2 33 649-681 56-88 (90)
277 PRK14878 UGMP family protein; 21.5 2.3E+02 0.0049 31.1 6.8 63 308-371 42-110 (323)
278 PF01150 GDA1_CD39: GDA1/CD39 21.5 1E+02 0.0022 35.4 4.3 21 193-213 163-183 (434)
279 PRK13310 N-acetyl-D-glucosamin 21.4 1.8E+02 0.004 31.3 6.0 47 331-377 245-300 (303)
280 KOG0996 Structural maintenance 21.4 1.9E+03 0.04 28.5 17.2 18 597-614 774-791 (1293)
281 PF03309 Pan_kinase: Type III 21.4 85 0.0018 31.9 3.2 20 3-22 1-20 (206)
282 TIGR01319 glmL_fam conserved h 21.4 80 0.0017 36.1 3.2 62 151-212 194-267 (463)
283 PLN02914 hexokinase 21.3 2.1E+02 0.0046 33.3 6.6 24 193-216 94-117 (490)
284 PRK10719 eutA reactivating fac 20.8 4.6E+02 0.01 30.3 9.0 81 312-394 66-153 (475)
285 PRK09604 UGMP family protein; 20.7 2E+02 0.0043 31.7 6.1 65 309-374 50-120 (332)
286 PRK09605 bifunctional UGMP fam 20.7 5.8E+02 0.013 30.1 10.5 63 308-371 46-114 (535)
287 TIGR00329 gcp_kae1 metallohydr 20.7 2.7E+02 0.0058 30.2 7.1 67 306-373 44-116 (305)
288 PF10168 Nup88: Nuclear pore c 20.6 1.6E+03 0.035 27.6 16.1 11 139-149 107-117 (717)
289 TIGR02168 SMC_prok_B chromosom 20.4 8.3E+02 0.018 31.8 12.9 44 598-641 152-195 (1179)
290 TIGR03319 YmdA_YtgF conserved 20.3 1.4E+03 0.031 26.8 13.3 61 679-739 91-151 (514)
291 PLN02362 hexokinase 20.2 2.6E+02 0.0057 32.8 7.1 24 193-216 94-117 (509)
No 1
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-126 Score=1044.44 Aligned_cols=723 Identities=57% Similarity=0.886 Sum_probs=679.6
Q ss_pred CeEEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEcCCceeecHhhHhhhhcCCcchHHHHHHhhCCCCCCHHH
Q 003056 1 MSVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (852)
Q Consensus 1 m~viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~v 80 (852)
|+|+|||||+.+|.+|+++.+++++|.|+.|+|.||++|+|..++|++|.+|.++..+|+.|++.++||++|+.|+||.+
T Consensus 1 msvvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~ 80 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEV 80 (727)
T ss_pred CCceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHHH
Q 003056 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (852)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~Aa 160 (852)
+.+.+++|+.++.++||.+++.+.|.|+.+.|++++|++|+|.+|+..|+..+..++.+|||+||+||++.||+++++||
T Consensus 81 q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA 160 (727)
T KOG0103|consen 81 QREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAA 160 (727)
T ss_pred hhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceeeechhHHHHHHhhhhcCCCCCC--CCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHH
Q 003056 161 TIAGLHPLRLFHETTATALAYGIYKTDLPEN--DQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVL 238 (852)
Q Consensus 161 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~--~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l 238 (852)
++|||++++||+|.+|+||+||++++++|.. ++++|+++|||++++.+|++.|..|++.++++.+|.++||++||+.|
T Consensus 161 ~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L 240 (727)
T KOG0103|consen 161 RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEAL 240 (727)
T ss_pred hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHH
Confidence 9999999999999999999999999999843 47999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHH
Q 003056 239 FQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPL 318 (852)
Q Consensus 239 ~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i 318 (852)
.+||+.+|+.+|++++..|++++.||+.+|||+|+.||+|...+++|+|+++|.|++..|+|++||++|.|+++|+..++
T Consensus 241 ~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~ 320 (727)
T KOG0103|consen 241 IDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPL 320 (727)
T ss_pred HHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhhhcCCCcccceEEeeecccc
Q 003056 319 EKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFS 398 (852)
Q Consensus 319 ~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ls~~~~~~~~~~~d~~~~~ 398 (852)
..+|++++++.+||+.|++|||+||||.|++.|.++||+++.+++|.+||||+|||++||++|+.||+|+|.++|+.||+
T Consensus 321 ~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~Di~pys 400 (727)
T KOG0103|consen 321 LKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDIVPYS 400 (727)
T ss_pred HHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCccccceecceeccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCcccCcCCCCCceEEEeeCCCCCCceEEEEEeecCcEEEEEEEeccccC-CCCccceeEEEcCCCCCCC-C
Q 003056 399 ISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGTFTVDVQYADVSEL-RAPAKISTYTIGPFQSTKS-E 476 (852)
Q Consensus 399 i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~~~i~~~y~~~~~~-~~~~~ig~~~i~~i~~~~~-~ 476 (852)
|.+.|..... +......+||+|.++|.+|.+||+|.++|++.++|.+...+ .....|++|+++++.+... +
T Consensus 401 Is~~w~~~~e-------d~~~~~evF~~~~~~p~~K~lT~~Rk~~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge 473 (727)
T KOG0103|consen 401 ISLRWVKQGE-------DGGSVTEVFPKGHPSPSVKLLTFNRKGPFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGE 473 (727)
T ss_pred EEEEeccccc-------cCCCceeeecCCCCCCCceEEEEEecCceEEEEEeccccccCCCCCceeeEEecccccCcccc
Confidence 9999987521 22355889999999999999999999999999999998877 5788999999999998855 6
Q ss_pred cceEEEEEEEcCCccEEEEEeeeeeeeeecccccCCcchhhccccCCCCCCCCCCCCCCccccccccccCCCCCCCCCCC
Q 003056 477 RAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQGTTDA 556 (852)
Q Consensus 477 ~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (852)
..+|+|++++|.+||++|..+.++++.++++ ++.. +|+.+.++.
T Consensus 474 ~skVKvkvr~n~~Gi~~i~sA~~~e~~~vee-v~~~------~~e~~~~~~----------------------------- 517 (727)
T KOG0103|consen 474 FSKVKVKVRLNEHGIDTIESATLIEDIEVEE-VPEE------PMEYDDAAK----------------------------- 517 (727)
T ss_pred ccceeEEEEEcCccceeeecceeecccchhc-cccc------hhhhhcchh-----------------------------
Confidence 7899999999999999999999999877665 4322 111111000
Q ss_pred CCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 003056 557 PGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYD 636 (852)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~ 636 (852)
+. +.....+.|+++++.+|++....+++|+..+++.+++++.+|..+|+...++.+++|+||+|||+
T Consensus 518 -~~------------~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~ 584 (727)
T KOG0103|consen 518 -ML------------ERIAPAENKKKVKKVDLPIEAYTKGALITDELELYIEKENKMILQDKLEKETVDAKNALEEYVYD 584 (727)
T ss_pred -hh------------hhhccccccceeeeccccceeeeccccCHHHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHHH
Confidence 00 00000112677889999999988788999999999999999999999999999999999999999
Q ss_pred hHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHH
Q 003056 637 MRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCIN 716 (852)
Q Consensus 637 ~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~dg~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~ 716 (852)
||++|.+.|..|+++++|+.|...|+++++|||++|+|.++..|..||.+|+.+++ ..|+.+++.||++++.+.+.|+
T Consensus 585 ~R~kl~~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~elk~~g~--~~r~~e~~~r~k~~d~~~~~i~ 662 (727)
T KOG0103|consen 585 MRDKLSDKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLEELKKLGD--KKRFDENEERPKAFDELGKKIQ 662 (727)
T ss_pred HHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHhhhh--hhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhhcCCC
Q 003056 717 SYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCRPIMTKPK 793 (852)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~kpk 793 (852)
.++..+.+ ++.++...|++.+.|+++++.+|.+++++.+| +.+++++.+.++|+..|.++.++||
T Consensus 663 ~~r~~~~~-----------~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~p-v~~~e~~~~~~~l~~~~~~i~~~~k 727 (727)
T KOG0103|consen 663 EIRKAIES-----------EMEKVLLEIEEAEKWLERKSNKQNKLSKTADP-VPSSEIESEAKELNNTCSDIISKPK 727 (727)
T ss_pred HHHHHHHH-----------HHHHHHHHHHHHHHHHhhhhhhhhcccCCCCC-CchHHHHHhhhhhccccccccccCC
Confidence 99988744 89999999999999999999999999999999 9999999999999999999999876
No 2
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-122 Score=946.21 Aligned_cols=599 Identities=31% Similarity=0.562 Sum_probs=568.3
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEcCCceeecHhhHhhhhcCCcchHHHHHHhhCCCCCCHHHH
Q 003056 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQ 81 (852)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~v~ 81 (852)
+||||||||||+||+++++|.++|+.|++|+|.+||+|+|.+++|++|+.|++++..||+||+++.|||||+.++|+.+|
T Consensus 37 tvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~vq 116 (663)
T KOG0100|consen 37 TVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSVQ 116 (663)
T ss_pred eEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChhhh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCceEeeCCCCceEEEEEEc-CceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHHH
Q 003056 82 RDLKSLPFAVTEGPDGYPLIHARYL-GETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (852)
Q Consensus 82 ~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~Aa 160 (852)
.+++++||+++.. +|.++++|... |+.+.|+|+++++|+|.++++.|+.|+|.++.++|+|||+||++.||+++++|.
T Consensus 117 ~Dik~~Pfkvv~k-~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKDAG 195 (663)
T KOG0100|consen 117 KDIKFLPFKVVNK-DGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAG 195 (663)
T ss_pred hhhhcCceEEEcC-CCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcccc
Confidence 9999999999876 78899999876 668999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHH
Q 003056 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (852)
Q Consensus 161 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~ 240 (852)
.+|||+|+|+||||+|||++||+++.+ ..+++||||+||||||+|++.+++|.|+|+++.||.+|||.|||+++++
T Consensus 196 tIAgLnV~RIiNePTaAAIAYGLDKk~----gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~ 271 (663)
T KOG0100|consen 196 TIAGLNVVRIINEPTAAAIAYGLDKKD----GEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVME 271 (663)
T ss_pred eeccceEEEeecCccHHHHHhcccccC----CcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHH
Confidence 999999999999999999999998865 4689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHH
Q 003056 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEK 320 (852)
Q Consensus 241 ~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~ 320 (852)
||.+.++++++.|++.+.+++.+|+++||++|+.||++.++.+.|++|+++.||+-++||..||++..++|.....|+++
T Consensus 272 ~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~k 351 (663)
T KOG0100|consen 272 YFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQK 351 (663)
T ss_pred HHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhc-CCCCcccCCchhHHHhhHHHhhhhhcCCCcccceEEeeeccccE
Q 003056 321 ALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFF-GKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSI 399 (852)
Q Consensus 321 ~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f-g~~v~~~~n~deava~GAa~~aa~ls~~~~~~~~~~~d~~~~~i 399 (852)
+|+.+++...+|+.|+||||++|||.||++|+++| |++.++.+|||||||+|||.+|..+|+.....++.+.|++|+++
T Consensus 352 vl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLLDv~pLtl 431 (663)
T KOG0100|consen 352 VLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDVNPLTL 431 (663)
T ss_pred HHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEEEeeccccc
Confidence 99999999999999999999999999999999999 79999999999999999999999999998899999999999999
Q ss_pred EEEecCCCCcccCcCCCCCceEEEeeCCCCCCceEEEEEeecCc----EEEEEEEeccccC-CCCccceeEEEcCCCCCC
Q 003056 400 SLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSEL-RAPAKISTYTIGPFQSTK 474 (852)
Q Consensus 400 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~y~~~~~~-~~~~~ig~~~i~~i~~~~ 474 (852)
||++.+| .+..|||||+.+|++|+..|.+..| ..|.+ |++++++ .+|..||.|.++||||++
T Consensus 432 GIETvGG------------VMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~v-yEGER~mtkdn~lLGkFdltGipPAP 498 (663)
T KOG0100|consen 432 GIETVGG------------VMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQV-YEGERPMTKDNHLLGKFDLTGIPPAP 498 (663)
T ss_pred eeeeecc------------eeeccccCCcccCccccceeeecccCCceEEEEE-eeccccccccccccccccccCCCCCC
Confidence 9999987 7899999999999999998887443 44544 8899998 999999999999999999
Q ss_pred CCcceEEEEEEEcCCccEEEEEeeeeeeeeecccccCCcchhhccccCCCCCCCCCCCCCCccccccccccCCCCCCCCC
Q 003056 475 SERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQGTT 554 (852)
Q Consensus 475 ~~~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (852)
+|.|.|.|+|.+|.||||+|++. |
T Consensus 499 RGvpqIEVtFevDangiL~VsAe-------------------------D------------------------------- 522 (663)
T KOG0100|consen 499 RGVPQIEVTFEVDANGILQVSAE-------------------------D------------------------------- 522 (663)
T ss_pred CCCccEEEEEEEccCceEEEEee-------------------------c-------------------------------
Confidence 99999999999999999999884 2
Q ss_pred CCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 003056 555 DAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYV 634 (852)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~i 634 (852)
|.+.++..|.|++.. +.||+++|++|+...++++.+|+...++.++||.||+|.
T Consensus 523 -------------------------Kgtg~~~kitItNd~-~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~Ya 576 (663)
T KOG0100|consen 523 -------------------------KGTGKKEKITITNDK-GRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYA 576 (663)
T ss_pred -------------------------cCCCCcceEEEecCC-CCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHH
Confidence 222233456776655 589999999999999999999999999999999999999
Q ss_pred HHhHHHhh--hhhhcCCCHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHhccchHHHHHHhh
Q 003056 635 YDMRNKLC--DKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEF 701 (852)
Q Consensus 635 y~~r~~L~--~~~~~~~~~~er~~i~~~l~e~~~WL~~dg~~a~~~~~~~kl~~L~~~~~pi~~R~~e~ 701 (852)
|.|++.+. +.+...+++++++.+...+++..+||.++ .+|.+++|.+|+++|..++.||....+..
T Consensus 577 yslKnqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n-~~a~~Ee~~ek~kele~vv~PiisklY~~ 644 (663)
T KOG0100|consen 577 YSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESN-QDASKEEFKEKKKELEAVVQPIISKLYGG 644 (663)
T ss_pred HHhhhccCchhHhcccCChhHHHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999996 35889999999999999999999999988 99999999999999999999999877653
No 3
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-112 Score=932.14 Aligned_cols=772 Identities=28% Similarity=0.445 Sum_probs=643.8
Q ss_pred eEEEEEcCccceEEEEEECC-ceEEEeCCCCCccceEEEEEcCCceeecHhhHhhhhcCCcchHHHHHHhhCCCCCCHHH
Q 003056 2 SVVGFDLGNESCIVAVARQR-GIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (852)
Q Consensus 2 ~viGID~GTt~s~va~~~~~-~~~iv~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~v 80 (852)
+|++||+||.|++||++++| +++|++|..++|++|++|+|.+++|+||++|.+++.++|++++.+++.|||+...++.+
T Consensus 23 AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~~v 102 (902)
T KOG0104|consen 23 AVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDPTV 102 (902)
T ss_pred hheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCcHH
Confidence 79999999999999999998 88999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCc-eEeeCC-CCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHH
Q 003056 81 QRDLKSLPF-AVTEGP-DGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVID 158 (852)
Q Consensus 81 ~~~~~~~~~-~~~~~~-~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~ 158 (852)
+.+.+++|| .++.++ ++.+.|.+. + ...|++|+|++|+|.+.+..|+.+...+|.++|||||.||++.||+++.+
T Consensus 103 ~ly~~~~p~~e~v~d~~rstV~F~i~--d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~ 179 (902)
T KOG0104|consen 103 DLYQKRFPFFELVEDPQRSTVVFKIS--D-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQ 179 (902)
T ss_pred HHHHhcCCceeecccCccceEEEEeC--C-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHH
Confidence 998887775 566664 677777654 3 46899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeC----------CeEEEEEEeCCCC
Q 003056 159 AATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK----------GQLKILGHSFDRS 228 (852)
Q Consensus 159 Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~----------~~~~vl~~~~d~~ 228 (852)
||++||+++++||||.+||||.||++++..+...+++++|||||+|+|.+++|.|.- ..+++++++||.+
T Consensus 180 Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~t 259 (902)
T KOG0104|consen 180 AAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRT 259 (902)
T ss_pred HHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCc
Confidence 999999999999999999999999998655555699999999999999999999972 4799999999999
Q ss_pred cccHHHHHHHHHHHHHHHHhhhcc--cccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCCcceEEEecHHHHHHH
Q 003056 229 VGGRDFDEVLFQHFAAKFKEEYKI--DVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQI 306 (852)
Q Consensus 229 lGG~~~D~~l~~~l~~~~~~k~~~--~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~itr~efe~l 306 (852)
|||..|.++|.+||.+.|.++++. ++..|||+|+||.++|+++|.+||+|..+.++|++|++|+||+.+|||++||++
T Consensus 260 LGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEel 339 (902)
T KOG0104|consen 260 LGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEEL 339 (902)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHH
Confidence 999999999999999999998854 688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcC-CCCcccCCchhHHHhhHHHhhhhhcCCCc
Q 003056 307 SAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFG-KEPRRTMNASECVARGCALQCAILSPTFK 385 (852)
Q Consensus 307 ~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg-~~v~~~~n~deava~GAa~~aa~ls~~~~ 385 (852)
|.+++.|+..||+++|..++++.++|+.|+|+||+||+|.||+.|.++.| .++.+++|+|||+++||+|+||.||..|+
T Consensus 340 c~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSksFK 419 (902)
T KOG0104|consen 340 CADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKSFK 419 (902)
T ss_pred HHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999998 67999999999999999999999999999
Q ss_pred ccceEEeeeccccEEEEecCCCCcccCcCCCCCceEEEeeCCCCCCceEEEEEee-cCcEEEEEEEeccccCCCCcccee
Q 003056 386 VREFQVNESFPFSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYR-SGTFTVDVQYADVSELRAPAKIST 464 (852)
Q Consensus 386 ~~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~-~~~~~i~~~y~~~~~~~~~~~ig~ 464 (852)
+++|.+.|.++|+|.+.+.+. +.+ ...+.....+|++|.+||.++.++|.. +++|.+.+.|+.- + ..+.+
T Consensus 420 vKpf~V~D~~~yp~~v~f~~~-~~i---~~~k~~~~~lf~~~~~yPnk~vi~~~~ysddf~~~~n~~~~---~--~nl~~ 490 (902)
T KOG0104|consen 420 VKPFNVVDASVYPYLVEFETE-PGI---HALKSVKRDLFARMSPYPNKKVITFTSYSDDFPFNINYGDL---G--QNLTT 490 (902)
T ss_pred ccceeeeecccccEEEEeccC-Ccc---cccchhHHHHHhcCCcCCCcceeeccccCCccccccchhhh---c--cCccE
Confidence 999999999999999998764 111 112235667999999999999888875 5678888877542 1 23558
Q ss_pred EEEcCCCCC-------CCCcceEEEEEEEcCCccEEEEEeeeeeeeeeccccc-------CCcch-hhccccCCCCCCCC
Q 003056 465 YTIGPFQST-------KSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVT-------KEPEK-EAAKMETDEVPSDA 529 (852)
Q Consensus 465 ~~i~~i~~~-------~~~~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~ 529 (852)
|.|+|+... ......|+++|.+|.+|++.|..++++++...+.... +.+.. +-++..+|..+.+.
T Consensus 491 velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~ 570 (902)
T KOG0104|consen 491 VELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEED 570 (902)
T ss_pred EEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchhh
Confidence 999998854 1235689999999999999999999887643222111 01000 00000001000000
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCcccc--eeEeeeEe--eccCCCCCHHHHHH
Q 003056 530 APPSSSETDVNMQDAKGTADAQGTTDAPGAENGVPESGDKPTQMETDKTPKKKV--KKTNIPVS--ELVYGGMLPVDVQK 605 (852)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--k~~~l~v~--~~~~~~ls~~ei~~ 605 (852)
.+. +.......+..++..+. +++..+...++ + ........+|.+. ....++|+ ...++.|+...++.
T Consensus 571 ae~-k~~ep~e~se~~ee~~~----d~s~e~k~e~~---t-~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~ 641 (902)
T KOG0104|consen 571 AEE-KGLEPSERSELEEEAEE----DASQEDKTEKE---T-SEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDA 641 (902)
T ss_pred hhh-hccCccccccccccccc----ccccccccccc---c-hhccCcchhhcccCcceeEeeeeeecccccCCchhHHHH
Confidence 000 00000000000000000 00000000000 0 0000000011111 11223333 33345799999999
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHHHHhHHHhh-hhhhcCCCHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHH
Q 003056 606 AVEKEFEMALQDRVMEETKDRKNAVEAYVYDMRNKLC-DKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKL 684 (852)
Q Consensus 606 ~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~L~-~~~~~~~~~~er~~i~~~l~e~~~WL~~dg~~a~~~~~~~kl 684 (852)
.+.++..+..+|+.+.++++|.|.||+|+|++.++|+ ++|..|++++|+..|...+..+.+||++++.+++++.|.+|+
T Consensus 642 ~~~kl~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~ 721 (902)
T KOG0104|consen 642 AVAKLEDFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKL 721 (902)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 9999999999999999999999999999999999997 689999999999999999999999999999999999999999
Q ss_pred HHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHHhc------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003056 685 EELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAALS------SDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQ 758 (852)
Q Consensus 685 ~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~------~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q 758 (852)
.+|++++..+.+|..+++++|+.++.|...|+...+++.. |++...-++..+++.|.+.+++...|+++....|
T Consensus 722 a~L~~l~~~~~~R~ee~kq~pe~l~~l~~~l~~s~~~l~~~~~~~~~~E~d~~ft~~e~~~L~k~i~~t~~W~~~~~~~~ 801 (902)
T KOG0104|consen 722 AELKKLETSKNFREEERKQFPEELEALKNLLNRSFSFLKQARNLSTWEEKDTIFTKTEIDTLEKVIAKTTAWLNDRLDLF 801 (902)
T ss_pred HHHHHHHhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccccccchhccchhhhhHHHHHHHHHHhHHHhhhhHHHH
Confidence 9999999999999999999999999999999999888743 5566556889999999999999999999999999
Q ss_pred hcCCCCCCCcccHHHHHHHHHHHHHHhhhhhcCCCC
Q 003056 759 DALPKYAAPVLLLGDVRRKAEALDRFCRPIMTKPKP 794 (852)
Q Consensus 759 ~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~kpkp 794 (852)
.++++++||+++++||..|++.|++++.+++||.|-
T Consensus 802 ~k~~k~edp~~k~kei~~K~k~Ldrev~~~lnK~k~ 837 (902)
T KOG0104|consen 802 EKKAKTEDPVLKVKEIEEKAKSLDREVLYLLNKLKI 837 (902)
T ss_pred HhhhcccCccccHHHHHHHHHhhHHHHHHHHHHhhc
Confidence 999999999999999999999999999999987766
No 4
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=1.1e-101 Score=916.01 Aligned_cols=601 Identities=31% Similarity=0.544 Sum_probs=551.8
Q ss_pred CeEEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEcCCceeecHhhHhhhhcCCcchHHHHHHhhCCCCCCHHH
Q 003056 1 MSVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (852)
Q Consensus 1 m~viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~v 80 (852)
+++||||||||||+||++.+|+++|++|..|+|++||+|+|.+++++||..|..+..++|.++++++|||||+.++++.+
T Consensus 4 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 83 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSVV 83 (653)
T ss_pred ccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchhH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHHH
Q 003056 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (852)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~Aa 160 (852)
+...+.+||.++...+|...+.+.+.+....|+|++|++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa 163 (653)
T PTZ00009 84 QSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAG 163 (653)
T ss_pred hhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHHH
Confidence 99999999999988889889999888877899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHH
Q 003056 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (852)
Q Consensus 161 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~ 240 (852)
++|||++++||+||+|||++|++.+.. ..+.++|||||||||||+||+++.++.++|+++.|+.+|||++||..|++
T Consensus 164 ~~AGl~v~~li~EptAAAl~y~~~~~~---~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~ 240 (653)
T PTZ00009 164 TIAGLNVLRIINEPTAAAIAYGLDKKG---DGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVE 240 (653)
T ss_pred HHcCCceeEEecchHHHHHHHhhhccC---CCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHH
Confidence 999999999999999999999986532 13678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhh-cccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHH
Q 003056 241 HFAAKFKEEY-KIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLE 319 (852)
Q Consensus 241 ~l~~~~~~k~-~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~ 319 (852)
||.++|..++ +.++..+++++.||+.+||++|+.||.+.++.+.|++++++.|+++.|||++||++|+++++++..+|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~ 320 (653)
T PTZ00009 241 FCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVE 320 (653)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 9999998877 477888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcC-CCCcccCCchhHHHhhHHHhhhhhcCC--CcccceEEeeecc
Q 003056 320 KALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFG-KEPRRTMNASECVARGCALQCAILSPT--FKVREFQVNESFP 396 (852)
Q Consensus 320 ~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg-~~v~~~~n~deava~GAa~~aa~ls~~--~~~~~~~~~d~~~ 396 (852)
++|+.++++..+|+.|+||||+||||+|+++|+++|+ ..+..++|||+|||+|||++|+++++. ++++++.+.|++|
T Consensus 321 ~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p 400 (653)
T PTZ00009 321 KVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTP 400 (653)
T ss_pred HHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeecc
Confidence 9999999999999999999999999999999999996 678899999999999999999999975 7889999999999
Q ss_pred ccEEEEecCCCCcccCcCCCCCceEEEeeCCCCCCceEEEEEeecC----cEEEEEEEeccccC-CCCccceeEEEcCCC
Q 003056 397 FSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSG----TFTVDVQYADVSEL-RAPAKISTYTIGPFQ 471 (852)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~----~~~i~~~y~~~~~~-~~~~~ig~~~i~~i~ 471 (852)
|+||++..++ .+.+||++|++||++++.+|.+.. .+.|.++ +++..+ .+|..||+|.|.+++
T Consensus 401 ~slgi~~~~~------------~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~-ege~~~~~~n~~lg~~~i~~i~ 467 (653)
T PTZ00009 401 LSLGLETAGG------------VMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVF-EGERAMTKDNNLLGKFHLDGIP 467 (653)
T ss_pred cccCccccCC------------ceEEEEeCCCcCCccceeEeEeecCCCceEEEEEE-ecccccCCCCceEEEEEEcCCC
Confidence 9999987654 578899999999999999886532 4788885 455555 788999999999999
Q ss_pred CCCCCcceEEEEEEEcCCccEEEEEeeeeeeeeecccccCCcchhhccccCCCCCCCCCCCCCCccccccccccCCCCCC
Q 003056 472 STKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQ 551 (852)
Q Consensus 472 ~~~~~~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (852)
+.+.+.+.|+|+|++|.||+|+|++. +.
T Consensus 468 ~~~~g~~~i~v~f~id~~Gil~v~~~-------------------------~~--------------------------- 495 (653)
T PTZ00009 468 PAPRGVPQIEVTFDIDANGILNVSAE-------------------------DK--------------------------- 495 (653)
T ss_pred CCCCCCceEEEEEEECCCCeEEEEEe-------------------------cc---------------------------
Confidence 88777789999999999999999875 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 003056 552 GTTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVE 631 (852)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LE 631 (852)
.+.+...++|... ..+|+.++++++++.+.+|..+|+.++++.+++|.||
T Consensus 496 -----------------------------~t~~~~~~~i~~~-~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lE 545 (653)
T PTZ00009 496 -----------------------------STGKSNKITITND-KGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLE 545 (653)
T ss_pred -----------------------------cCCceeeEEEeec-cccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhH
Confidence 0001223444432 2479999999999999999999999999999999999
Q ss_pred HHHHHhHHHhh-hhhhcCCCHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHhccchHHHHHHh
Q 003056 632 AYVYDMRNKLC-DKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKE 700 (852)
Q Consensus 632 s~iy~~r~~L~-~~~~~~~~~~er~~i~~~l~e~~~WL~~dg~~a~~~~~~~kl~~L~~~~~pi~~R~~e 700 (852)
+|||++|++|. +.|..++++++|++|.+.|+++++|||+ +++++.++|++|+++|+++++||..|++.
T Consensus 546 s~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~-~~~~~~~~~~~kl~eL~~~~~pi~~r~~~ 614 (653)
T PTZ00009 546 NYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEK-NQLAEKEEFEHKQKEVESVCNPIMTKMYQ 614 (653)
T ss_pred HHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999996 4599999999999999999999999995 68899999999999999999999999753
No 5
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.1e-100 Score=902.92 Aligned_cols=607 Identities=26% Similarity=0.460 Sum_probs=546.9
Q ss_pred CeEEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEc-CCceeecHhhHhhhhcCCcchHHHHHHhhCCCCCCHH
Q 003056 1 MSVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFG-DKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPE 79 (852)
Q Consensus 1 m~viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~-~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~ 79 (852)
-.|||||||||||+||++.+|.+.++.|..|.|.|||+|+|. +++++||..|..++..+|.++++++|||||+++.+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~-- 79 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE-- 79 (668)
T ss_pred CcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--
Confidence 048999999999999999999999999999999999999997 46899999999999999999999999999999865
Q ss_pred HHHhhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHH
Q 003056 80 LQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDA 159 (852)
Q Consensus 80 v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~A 159 (852)
++.+..++||.+..+++|.+.+.+...+ +.|+|++|++++|++|++.|+.++|.++.++|||||+||++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~~g~~~i~~~~~~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 157 (668)
T PRK13410 80 LDPESKRVPYTIRRNEQGNVRIKCPRLE--REFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDA 157 (668)
T ss_pred hHHhhccCCeEEEECCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 4556778999999988898888765443 78999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHH
Q 003056 160 ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLF 239 (852)
Q Consensus 160 a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~ 239 (852)
|++|||++++||+||+|||++|++.+. .+.++|||||||||||+||+++.++.++|+++.|+.+|||++||.+|+
T Consensus 158 a~~AGl~v~~li~EPtAAAlayg~~~~-----~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~ 232 (668)
T PRK13410 158 GRIAGLEVERILNEPTAAALAYGLDRS-----SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIV 232 (668)
T ss_pred HHHcCCCeEEEecchHHHHHHhccccC-----CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHH
Confidence 999999999999999999999998653 367999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCC----cceEEEecHHHHHHHHHHHHHHHH
Q 003056 240 QHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE----KDVRGFIKRDEFEQISAPILERVK 315 (852)
Q Consensus 240 ~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~----~d~~~~itr~efe~l~~~~~~~i~ 315 (852)
+||.++|..++++++..+++++.+|+.+||++|+.||.+..+.+.+++++.+ .++.+.|||++||++|+++++++.
T Consensus 233 ~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~ 312 (668)
T PRK13410 233 DWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLL 312 (668)
T ss_pred HHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987653 478899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhhhcCCCcccceEEeeec
Q 003056 316 RPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESF 395 (852)
Q Consensus 316 ~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ls~~~~~~~~~~~d~~ 395 (852)
.+|+++|+.+++...+|+.|+||||+||||+|+++|+++||..+..++||++|||+|||++|+++++. ++++.+.|++
T Consensus 313 ~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~--~~~~~l~Dv~ 390 (668)
T PRK13410 313 RPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGE--LKDLLLLDVT 390 (668)
T ss_pred HHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhccc--ccceeEEeec
Confidence 99999999999999999999999999999999999999999888899999999999999999999984 5789999999
Q ss_pred cccEEEEecCCCCcccCcCCCCCceEEEeeCCCCCCceEEEEEeecC----cEEEEEEEeccccC-CCCccceeEEEcCC
Q 003056 396 PFSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSG----TFTVDVQYADVSEL-RAPAKISTYTIGPF 470 (852)
Q Consensus 396 ~~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~----~~~i~~~y~~~~~~-~~~~~ig~~~i~~i 470 (852)
||+||+++.++ .+.+||++|+++|++++.+|.+.. .+.+.+ |+|+..+ .+|..||+|.|.++
T Consensus 391 p~slgie~~~g------------~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v-~qGe~~~~~~n~~lg~~~l~~i 457 (668)
T PRK13410 391 PLSLGLETIGG------------VMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHV-WQGEREMASDNKSLGRFKLSGI 457 (668)
T ss_pred cccccceecCC------------eeEEEEeCCCcccccccccceeccCCCcEEEEEE-EeeccccccCCceEEEEEEeCC
Confidence 99999998765 678999999999999999887643 355555 5566555 88999999999999
Q ss_pred CCCCCCcceEEEEEEEcCCccEEEEEeeeeeeeeecccccCCcchhhccccCCCCCCCCCCCCCCccccccccccCCCCC
Q 003056 471 QSTKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADA 550 (852)
Q Consensus 471 ~~~~~~~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (852)
++.+.|.++|+|+|++|.||+|+|++. +.
T Consensus 458 ~~~~~g~~~I~v~f~id~nGiL~V~a~-------------------------d~-------------------------- 486 (668)
T PRK13410 458 PPAPRGVPQVQVAFDIDANGILQVSAT-------------------------DR-------------------------- 486 (668)
T ss_pred CCCCCCCCeEEEEEEECCCcEEEEEEE-------------------------Ec--------------------------
Confidence 999888899999999999999999885 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 003056 551 QGTTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAV 630 (852)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~L 630 (852)
.+.++..++|... .+|+.++++++++++.+|..+|+.++++.++||+|
T Consensus 487 ------------------------------~tg~~~~~~i~~~--~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~ 534 (668)
T PRK13410 487 ------------------------------TTGREQSVTIQGA--STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRA 534 (668)
T ss_pred ------------------------------CCCceeeeeeccc--ccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 0001123344332 47999999999999999999999999999999999
Q ss_pred HHHHHHhHHHhhh---hhhcCCCHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHhccchHHHHHHhhhcchHH
Q 003056 631 EAYVYDMRNKLCD---KYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEFTDRSSV 707 (852)
Q Consensus 631 Es~iy~~r~~L~~---~~~~~~~~~er~~i~~~l~e~~~WL~~dg~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a 707 (852)
|+|||.+|++|.+ .|..++++++|++|...|+++++|||+++.+...+.|.++++.|+.++.||..|+.| .-..-
T Consensus 535 e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~ 612 (668)
T PRK13410 535 LTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRAEYKE--EDEGP 612 (668)
T ss_pred HHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccch
Confidence 9999999999964 588999999999999999999999999988999999999999999999999999999 22333
Q ss_pred HHHHHHHHH
Q 003056 708 IDQLAYCIN 716 (852)
Q Consensus 708 ~~~l~~~l~ 716 (852)
+..+++.+.
T Consensus 613 ~~~~~~~~~ 621 (668)
T PRK13410 613 LQGIKNTFG 621 (668)
T ss_pred hhhHHhhcc
Confidence 444455444
No 6
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=1.1e-98 Score=889.21 Aligned_cols=585 Identities=28% Similarity=0.494 Sum_probs=536.0
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEcC-CceeecHhhHhhhhcCCcchHHHHHHhhCCCCCCHHH
Q 003056 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGD-KQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (852)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~v 80 (852)
+|||||||||||+||++.+|+++|+.|..|+|.+||+|+|.+ ++++||..|..+..++|.++++++|||||+.++|+.+
T Consensus 42 ~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 121 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDAT 121 (663)
T ss_pred cEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHHH
Confidence 599999999999999999999999999999999999999975 5899999999999999999999999999999999999
Q ss_pred HHhhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHHH
Q 003056 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (852)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~Aa 160 (852)
+...+++||.++..++|.+.+.+. + ..|+|++|++++|++|++.|+.++|.++.++|||||+||++.||+++++||
T Consensus 122 ~~~~~~~p~~~~~~~~~~~~~~~~--~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 197 (663)
T PTZ00400 122 KKEQKILPYKIVRASNGDAWIEAQ--G--KKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAG 197 (663)
T ss_pred HhhhccCCeEEEecCCCceEEEEC--C--EEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 999999999999988888777653 3 689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHH
Q 003056 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (852)
Q Consensus 161 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~ 240 (852)
++|||++++||+||+|||++|++... .+.++|||||||||||+||+++.++.++|+++.|+.++||++||..|++
T Consensus 198 ~~AGl~v~~li~EptAAAlay~~~~~-----~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~ 272 (663)
T PTZ00400 198 KIAGLDVLRIINEPTAAALAFGMDKN-----DGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILN 272 (663)
T ss_pred HHcCCceEEEeCchHHHHHHhccccC-----CCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHH
Confidence 99999999999999999999987542 3689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCC----cceEEEecHHHHHHHHHHHHHHHHH
Q 003056 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE----KDVRGFIKRDEFEQISAPILERVKR 316 (852)
Q Consensus 241 ~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~----~d~~~~itr~efe~l~~~~~~~i~~ 316 (852)
||.++|..+++.++..+++++.||+.+||++|+.||.+.++.+.+++++.+ .++.+.|||++|+++|++++.++..
T Consensus 273 ~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~ 352 (663)
T PTZ00400 273 YLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIE 352 (663)
T ss_pred HHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887654 4789999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhhhcCCCcccceEEeeecc
Q 003056 317 PLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFP 396 (852)
Q Consensus 317 ~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ls~~~~~~~~~~~d~~~ 396 (852)
+|+++|+.+++...+|+.|+||||+||||+|+++|+++||.++..++||++|||+|||++|+++++. ++++.+.|++|
T Consensus 353 ~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~--~~~~~~~dv~p 430 (663)
T PTZ00400 353 PCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGE--IKDLLLLDVTP 430 (663)
T ss_pred HHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCC--ccceEEEeccc
Confidence 9999999999999999999999999999999999999999888899999999999999999999875 57899999999
Q ss_pred ccEEEEecCCCCcccCcCCCCCceEEEeeCCCCCCceEEEEEeecCc----EEEEEEEeccccC-CCCccceeEEEcCCC
Q 003056 397 FSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSEL-RAPAKISTYTIGPFQ 471 (852)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~y~~~~~~-~~~~~ig~~~i~~i~ 471 (852)
|+||+++.++ .+.+||++|+++|++++.+|.+..+ +.|.+ |+|+..+ .+|..||+|.|.+++
T Consensus 431 ~slgi~~~~g------------~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i-~ege~~~~~~n~~lg~~~i~~i~ 497 (663)
T PTZ00400 431 LSLGIETLGG------------VFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKV-FQGEREMAADNKLLGQFDLVGIP 497 (663)
T ss_pred cceEEEecCC------------eeEEEEecCccCCccceeeeeeccCCCceEEEEE-EEecCccCCcCceeEEEEEcCCC
Confidence 9999998765 6789999999999999998876543 56666 4566666 888999999999999
Q ss_pred CCCCCcceEEEEEEEcCCccEEEEEeeeeeeeeecccccCCcchhhccccCCCCCCCCCCCCCCccccccccccCCCCCC
Q 003056 472 STKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQ 551 (852)
Q Consensus 472 ~~~~~~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (852)
+.+.|.+.|+|+|.+|.||+|+|++. +
T Consensus 498 ~~~~g~~~i~v~f~id~~Gil~v~a~-------------------------~---------------------------- 524 (663)
T PTZ00400 498 PAPRGVPQIEVTFDVDANGIMNISAV-------------------------D---------------------------- 524 (663)
T ss_pred CCCCCCceEEEEEEECCCCCEEEEEE-------------------------e----------------------------
Confidence 88888889999999999999999875 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 003056 552 GTTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVE 631 (852)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LE 631 (852)
+.+.++..++|... .+|+.++++++++++.+|..+|+.++++.++||.||
T Consensus 525 ----------------------------~~~~~~~~~~i~~~--~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lE 574 (663)
T PTZ00400 525 ----------------------------KSTGKKQEITIQSS--GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAE 574 (663)
T ss_pred ----------------------------ccCCcEEEEEeecc--ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 00012234455433 379999999999999999999999999999999999
Q ss_pred HHHHHhHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHhccchHHHHH
Q 003056 632 AYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERY 698 (852)
Q Consensus 632 s~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~dg~~a~~~~~~~kl~~L~~~~~pi~~R~ 698 (852)
+|||.+|++|.+ |..++++++|++|.+.|+++++|||++ +.+.|++++++|++++.++..++
T Consensus 575 s~iy~~r~~l~e-~~~~~s~~ere~i~~~l~~~~~WL~~~----d~~~i~~k~~eL~~~l~~l~~k~ 636 (663)
T PTZ00400 575 TLIYSVEKQLSD-LKDKISDADKDELKQKITKLRSTLSSE----DVDSIKDKTKQLQEASWKISQQA 636 (663)
T ss_pred HHHHHHHHHHHH-HhhhCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999974 889999999999999999999999976 47899999999999999998753
No 7
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.3e-98 Score=885.07 Aligned_cols=588 Identities=28% Similarity=0.487 Sum_probs=531.9
Q ss_pred CeEEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEcC-CceeecHhhHhhhhcCCcchHHHHHHhhCCCCCCHH
Q 003056 1 MSVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGD-KQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPE 79 (852)
Q Consensus 1 m~viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~ 79 (852)
-.|||||||||||+||++.+|.+.++.|..|+|.+||+|+|.+ ++++||..|..++.++|.++++++|||||+.+.++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 0389999999999999999999999999999999999999975 589999999999999999999999999999998864
Q ss_pred HHHhhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHH
Q 003056 80 LQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDA 159 (852)
Q Consensus 80 v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~A 159 (852)
.+.+++||.++...+|.+.+.+. + ..++|++|++++|++|++.|+.++|.++.++|||||+||++.||+++++|
T Consensus 82 --~~~~~~~~~~v~~~~~~~~~~i~--~--~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 155 (653)
T PRK13411 82 --EERSRVPYTCVKGRDDTVNVQIR--G--RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDA 155 (653)
T ss_pred --HHhhcCCceEEecCCCceEEEEC--C--EEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHH
Confidence 45678999999888888777653 3 67999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHH
Q 003056 160 ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLF 239 (852)
Q Consensus 160 a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~ 239 (852)
|++|||++++||+||+|||++|++.+.. .+.++|||||||||||+||+++.++.++|+++.|+.+|||++||..|+
T Consensus 156 a~~AGl~v~~li~EPtAAAl~y~~~~~~----~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~ 231 (653)
T PRK13411 156 GTIAGLEVLRIINEPTAAALAYGLDKQD----QEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIV 231 (653)
T ss_pred HHHcCCCeEEEecchHHHHHHhcccccC----CCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHH
Confidence 9999999999999999999999986532 367899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCC----cceEEEecHHHHHHHHHHHHHHHH
Q 003056 240 QHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE----KDVRGFIKRDEFEQISAPILERVK 315 (852)
Q Consensus 240 ~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~----~d~~~~itr~efe~l~~~~~~~i~ 315 (852)
+||.++|..++++++..+++++.||+.+||++|+.||.+..+.+.+++++.+ .++.+.|||++|+++|+++++++.
T Consensus 232 ~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~ 311 (653)
T PRK13411 232 DWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATI 311 (653)
T ss_pred HHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHH
Confidence 9999999998899999999999999999999999999999999999887543 578999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcC-CCCcccCCchhHHHhhHHHhhhhhcCCCcccceEEeee
Q 003056 316 RPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFG-KEPRRTMNASECVARGCALQCAILSPTFKVREFQVNES 394 (852)
Q Consensus 316 ~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg-~~v~~~~n~deava~GAa~~aa~ls~~~~~~~~~~~d~ 394 (852)
.+|+++|+.+++...+|+.|+||||+||||+|+++|+++|| ..+..++||++|||+|||++|+++++. ++++.+.|+
T Consensus 312 ~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~--~~~~~~~dv 389 (653)
T PRK13411 312 EPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE--VKDLLLLDV 389 (653)
T ss_pred HHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC--ccceeeeec
Confidence 99999999999999999999999999999999999999997 678889999999999999999999975 678999999
Q ss_pred ccccEEEEecCCCCcccCcCCCCCceEEEeeCCCCCCceEEEEEeecC--c--EEEEEEEeccccC-CCCccceeEEEcC
Q 003056 395 FPFSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSG--T--FTVDVQYADVSEL-RAPAKISTYTIGP 469 (852)
Q Consensus 395 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~--~--~~i~~~y~~~~~~-~~~~~ig~~~i~~ 469 (852)
+||+||+++.++ .+.+||++|++||++++.+|.+.. . +.|.+ |+|+... .+|..||.|.|.+
T Consensus 390 ~p~slgi~~~~~------------~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v-~~ge~~~~~~n~~lg~~~l~~ 456 (653)
T PRK13411 390 TPLSLGIETLGE------------VFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHV-LQGERAMAKDNKSLGKFLLTG 456 (653)
T ss_pred ccceeeEEecCC------------ceEEEEECCCcccceeeEEEEeccCCCeEEEEEE-EEecCcccccCceeeEEEEcC
Confidence 999999998765 678999999999999999987643 2 45555 5666665 7889999999999
Q ss_pred CCCCCCCcceEEEEEEEcCCccEEEEEeeeeeeeeecccccCCcchhhccccCCCCCCCCCCCCCCccccccccccCCCC
Q 003056 470 FQSTKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTAD 549 (852)
Q Consensus 470 i~~~~~~~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (852)
+++.+.|.+.|+|+|.+|.||+|+|++. |.
T Consensus 457 i~~~~~g~~~i~v~f~id~~Gil~v~a~-------------------------d~------------------------- 486 (653)
T PRK13411 457 IPPAPRGVPQIEVSFEIDVNGILKVSAQ-------------------------DQ------------------------- 486 (653)
T ss_pred CCCCCCCCccEEEEEEECCCCeEEEEEe-------------------------ec-------------------------
Confidence 9998888889999999999999999985 10
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 003056 550 AQGTTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNA 629 (852)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~ 629 (852)
.+.++..+.+... .+||.++++++++++.+|..+|+.++++.++||.
T Consensus 487 -------------------------------~t~~~~~~~i~~~--~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~ 533 (653)
T PRK13411 487 -------------------------------GTGREQSIRITNT--GGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQ 533 (653)
T ss_pred -------------------------------cCCceEeeEEecc--ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 0001123344332 3799999999999999999999999999999999
Q ss_pred HHHHHHHhHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHhccchHHHHHH
Q 003056 630 VEAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYK 699 (852)
Q Consensus 630 LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~dg~~a~~~~~~~kl~~L~~~~~pi~~R~~ 699 (852)
||+|||.+|++|.+ +..++++++|++|.+.|+++++|||+ .+++.++|++++++|++.+.||..+++
T Consensus 534 lEs~iy~~r~~l~~-~~~~~~~~er~~i~~~l~~~~~wL~~--~~~~~~~~~~~~~el~~~~~~i~~~~y 600 (653)
T PRK13411 534 ADSLLYSYESTLKE-NGELISEELKQRAEQKVEQLEAALTD--PNISLEELKQQLEEFQQALLAIGAEVY 600 (653)
T ss_pred HHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999974 68899999999999999999999997 356889999999999999999998765
No 8
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=7e-97 Score=875.45 Aligned_cols=586 Identities=30% Similarity=0.510 Sum_probs=534.2
Q ss_pred Ce-EEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEc-CCceeecHhhHhhhhcCCcchHHHHHHhhCCCCCCH
Q 003056 1 MS-VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFG-DKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDP 78 (852)
Q Consensus 1 m~-viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~-~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~ 78 (852)
|+ |||||||||||+||++++|.++++.|..|+|.+||+|+|. +++++||..|..+..++|.++++++|||||+. ++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~ 78 (627)
T PRK00290 1 MGKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DE 78 (627)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--ch
Confidence 64 9999999999999999999999999999999999999997 67899999999999999999999999999998 67
Q ss_pred HHHHhhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHH
Q 003056 79 ELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVID 158 (852)
Q Consensus 79 ~v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~ 158 (852)
.++.+.+++||.++..++|.+.+.+ .| ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++
T Consensus 79 ~~~~~~~~~p~~~~~~~~~~~~~~~--~~--~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~ 154 (627)
T PRK00290 79 EVQKDIKLVPYKIVKADNGDAWVEI--DG--KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKD 154 (627)
T ss_pred HHHHHhhcCCeEEEEcCCCceEEEE--CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHH
Confidence 7888889999999998888777654 33 6799999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHH
Q 003056 159 AATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVL 238 (852)
Q Consensus 159 Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l 238 (852)
||++|||++++||+||+|||++|++.+. .+.++|||||||||||+|++++.++.++|+++.|+.++||.+||.+|
T Consensus 155 Aa~~AGl~v~~li~EptAAAl~y~~~~~-----~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l 229 (627)
T PRK00290 155 AGKIAGLEVLRIINEPTAAALAYGLDKK-----GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRI 229 (627)
T ss_pred HHHHcCCceEEEecchHHHHHHhhhccC-----CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHH
Confidence 9999999999999999999999997652 36889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCC----cceEEEecHHHHHHHHHHHHHHH
Q 003056 239 FQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE----KDVRGFIKRDEFEQISAPILERV 314 (852)
Q Consensus 239 ~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~----~d~~~~itr~efe~l~~~~~~~i 314 (852)
++|+.++|..++++++..+++++.||+.+||++|+.||.+..+.+.+++++.+ .++.+.|||++|+++|+++++++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~ 309 (627)
T PRK00290 230 IDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERT 309 (627)
T ss_pred HHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987653 67899999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhhhcCCCcccceEEeee
Q 003056 315 KRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNES 394 (852)
Q Consensus 315 ~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ls~~~~~~~~~~~d~ 394 (852)
..+|+++|+.+++...+|+.|+||||+||||+|++.|+++||.++..++||++|||+|||++|+++++. ++++.+.|+
T Consensus 310 ~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~--~~~~~~~d~ 387 (627)
T PRK00290 310 IEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGD--VKDVLLLDV 387 (627)
T ss_pred HHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCC--ccceeeeec
Confidence 999999999999999999999999999999999999999999888899999999999999999999874 678999999
Q ss_pred ccccEEEEecCCCCcccCcCCCCCceEEEeeCCCCCCceEEEEEeecCc----EEEEEEEeccccC-CCCccceeEEEcC
Q 003056 395 FPFSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSEL-RAPAKISTYTIGP 469 (852)
Q Consensus 395 ~~~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~y~~~~~~-~~~~~ig~~~i~~ 469 (852)
+||+||+++.++ .+.+||++|+++|++++.+|.+..+ +.|.+++ ++..+ .+|..||+|.|.+
T Consensus 388 ~~~slgi~~~~~------------~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~-ge~~~~~~~~~lg~~~i~~ 454 (627)
T PRK00290 388 TPLSLGIETLGG------------VMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQ-GEREMAADNKSLGRFNLTG 454 (627)
T ss_pred cceEEEEEecCC------------eEEEEecCCCcCCccceEEEEecCCCcceEEEEEEE-ecccccCcCceEEEEEECC
Confidence 999999998765 5789999999999999999987553 5677754 55555 7889999999999
Q ss_pred CCCCCCCcceEEEEEEEcCCccEEEEEeeeeeeeeecccccCCcchhhccccCCCCCCCCCCCCCCccccccccccCCCC
Q 003056 470 FQSTKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTAD 549 (852)
Q Consensus 470 i~~~~~~~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (852)
+++.+.+.+.|+|+|.+|.||+|+|++...
T Consensus 455 ~~~~~~g~~~i~v~f~~d~~gil~v~a~~~-------------------------------------------------- 484 (627)
T PRK00290 455 IPPAPRGVPQIEVTFDIDANGIVHVSAKDK-------------------------------------------------- 484 (627)
T ss_pred CCCCCCCCceEEEEEEECCCceEEEEEEEc--------------------------------------------------
Confidence 998887878999999999999999987500
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 003056 550 AQGTTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNA 629 (852)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~ 629 (852)
.+.+...+.+... .+|+.++++++++++.+|...|+..+++.++||.
T Consensus 485 -------------------------------~~~~~~~~~i~~~--~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~ 531 (627)
T PRK00290 485 -------------------------------GTGKEQSITITAS--SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQ 531 (627)
T ss_pred -------------------------------cCCceeEEEeccc--cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHH
Confidence 0001123334322 3799999999999999999999999999999999
Q ss_pred HHHHHHHhHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHhccchHHHHHHh
Q 003056 630 VEAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKE 700 (852)
Q Consensus 630 LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~dg~~a~~~~~~~kl~~L~~~~~pi~~R~~e 700 (852)
||+|||.+|++|. ++..++++++|++|.+.|+++++|||++ +.++|++++++|+++++|+..|++.
T Consensus 532 le~~i~~~~~~l~-~~~~~~~~~e~~~i~~~l~~~~~wL~~~----~~~~i~~k~~~L~~~~~~~~~~~~~ 597 (627)
T PRK00290 532 ADSLIYQTEKTLK-ELGDKVPADEKEKIEAAIKELKEALKGE----DKEAIKAKTEELTQASQKLGEAMYQ 597 (627)
T ss_pred HHHHHHHHHHHHH-HHhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999997 5888999999999999999999999975 6789999999999999999998754
No 9
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=7.2e-97 Score=874.01 Aligned_cols=587 Identities=28% Similarity=0.473 Sum_probs=528.2
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEcC-CceeecHhhHhhhhcCCcchHHHHHHhhCCCCCCHHH
Q 003056 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGD-KQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (852)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~v 80 (852)
+|||||||||||+||++.+|.+.+++|..|+|.+||+|+|.+ ++++||..|..++.++|.++++++|||||+.+.+ +
T Consensus 40 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~ 117 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE--V 117 (673)
T ss_pred CEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--h
Confidence 499999999999999999999999999999999999999975 5799999999999999999999999999999876 4
Q ss_pred HHhhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHHH
Q 003056 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (852)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~Aa 160 (852)
+.+.+.+||.++..++|.+.+.+...+ ..|+|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 118 ~~~~~~~~~~v~~~~~~~v~~~~~~~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 195 (673)
T PLN03184 118 DEESKQVSYRVVRDENGNVKLDCPAIG--KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAG 195 (673)
T ss_pred hhhhhcCCeEEEecCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 566788999999988898888765544 579999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHH
Q 003056 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (852)
Q Consensus 161 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~ 240 (852)
++|||++++||+||+|||++|++.+. .+.++|||||||||||+||+++.++.++|+++.|+.+|||++||..|++
T Consensus 196 ~~AGl~v~~li~EPtAAAlayg~~~~-----~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~ 270 (673)
T PLN03184 196 RIAGLEVLRIINEPTAASLAYGFEKK-----SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVD 270 (673)
T ss_pred HHCCCCeEEEeCcHHHHHHHhhcccC-----CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHH
Confidence 99999999999999999999997653 3578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccC----CcceEEEecHHHHHHHHHHHHHHHHH
Q 003056 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLME----EKDVRGFIKRDEFEQISAPILERVKR 316 (852)
Q Consensus 241 ~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~----~~d~~~~itr~efe~l~~~~~~~i~~ 316 (852)
|+.++|..+++.++..+++++.||+.+||++|+.||.+..+.+.++++.. +.++.+.|||++|+++|.++++++..
T Consensus 271 ~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~ 350 (673)
T PLN03184 271 WLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKT 350 (673)
T ss_pred HHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987653 35789999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhhhcCCCcccceEEeeecc
Q 003056 317 PLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFP 396 (852)
Q Consensus 317 ~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ls~~~~~~~~~~~d~~~ 396 (852)
+|+++|+.+++...+|+.|+||||+||||+|+++|+++||..+..++|||+|||+|||++|+++++. ++++.+.|++|
T Consensus 351 ~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~--~~~~~~~dv~p 428 (673)
T PLN03184 351 PVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGE--VSDIVLLDVTP 428 (673)
T ss_pred HHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccC--ccceEEEeccc
Confidence 9999999999999999999999999999999999999999888899999999999999999999974 57899999999
Q ss_pred ccEEEEecCCCCcccCcCCCCCceEEEeeCCCCCCceEEEEEeecC--cEEEEEE-EeccccC-CCCccceeEEEcCCCC
Q 003056 397 FSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSG--TFTVDVQ-YADVSEL-RAPAKISTYTIGPFQS 472 (852)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~--~~~i~~~-y~~~~~~-~~~~~ig~~~i~~i~~ 472 (852)
|+||+++.++ .+.+|||+|++||++++.+|.+.. .+.+.+. |+++..+ .+|..||+|.|.++++
T Consensus 429 ~slgi~~~~~------------~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~ 496 (673)
T PLN03184 429 LSLGLETLGG------------VMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPP 496 (673)
T ss_pred ccceEEecCC------------eeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCC
Confidence 9999999765 678899999999999999988653 3555543 5776666 7899999999999998
Q ss_pred CCCCcceEEEEEEEcCCccEEEEEeeeeeeeeecccccCCcchhhccccCCCCCCCCCCCCCCccccccccccCCCCCCC
Q 003056 473 TKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQG 552 (852)
Q Consensus 473 ~~~~~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (852)
.+.+.++|+|+|.+|.||+|+|++. +
T Consensus 497 ~~~g~~~i~v~f~id~~GiL~V~a~-------------------------~----------------------------- 522 (673)
T PLN03184 497 APRGVPQIEVKFDIDANGILSVSAT-------------------------D----------------------------- 522 (673)
T ss_pred CCCCCceEEEEEEeCCCCeEEEEEE-------------------------e-----------------------------
Confidence 8888889999999999999999986 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 003056 553 TTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEA 632 (852)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs 632 (852)
+.+.++..++|... .+||.++++++++++.+|..+|+.++++.++||.||+
T Consensus 523 ---------------------------~~t~~~~~~~i~~~--~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~ 573 (673)
T PLN03184 523 ---------------------------KGTGKKQDITITGA--STLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADS 573 (673)
T ss_pred ---------------------------cCCCeEEEEEeccc--ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHH
Confidence 00012234444422 3799999999999999999999999999999999999
Q ss_pred HHHHhHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHhccchHHHHHH
Q 003056 633 YVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYK 699 (852)
Q Consensus 633 ~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~dg~~a~~~~~~~kl~~L~~~~~pi~~R~~ 699 (852)
|||.+|++|. +|..++++++|++|.+.|+++++|||.++ .+.+++++++|.+...++..+++
T Consensus 574 ~iy~~r~~l~-e~~~~~~~eer~~l~~~l~~~e~wL~~~d----~~~ik~~~~~l~~~l~~l~~~~~ 635 (673)
T PLN03184 574 VVYQTEKQLK-ELGDKVPADVKEKVEAKLKELKDAIASGS----TQKMKDAMAALNQEVMQIGQSLY 635 (673)
T ss_pred HHHHHHHHHH-HHhhhCCHHHHHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 48899999999999999999999999763 45667777777777777766543
No 10
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=6e-96 Score=858.63 Aligned_cols=586 Identities=27% Similarity=0.463 Sum_probs=534.1
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEcCCceeecHhhHhhhhcCCcchHHHHHHhhCCCCCCHHHH
Q 003056 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQ 81 (852)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~v~ 81 (852)
.+||||||||||+||++.++.++++.|..|.|.+||+|+|.+++++||..|..++..+|.++++++||+||+.+.++.++
T Consensus 28 ~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v~ 107 (657)
T PTZ00186 28 DVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQ 107 (657)
T ss_pred eEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHHHH
Q 003056 82 RDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAAT 161 (852)
Q Consensus 82 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~Aa~ 161 (852)
...+.+||.++...+|.+.+.. +....|+|++|++++|++|+..|+.++|.++.++|||||+||++.||+++++||+
T Consensus 108 ~~~~~~p~~vv~~~~~~~~i~~---~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~ 184 (657)
T PTZ00186 108 KDIKNVPYKIVRAGNGDAWVQD---GNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGT 184 (657)
T ss_pred HhhccCcEEEEEcCCCceEEEe---CCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHH
Confidence 9999999999988888766543 2246899999999999999999999999999999999999999999999999999
Q ss_pred HcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHHH
Q 003056 162 IAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQH 241 (852)
Q Consensus 162 ~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~ 241 (852)
+|||++++||+||+|||++|++... .+.++|||||||||||+||+++.++.++|+++.|+.+|||+|||.+|++|
T Consensus 185 ~AGl~v~rlInEPtAAAlayg~~~~-----~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~ 259 (657)
T PTZ00186 185 IAGLNVIRVVNEPTAAALAYGMDKT-----KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDY 259 (657)
T ss_pred HcCCCeEEEEcChHHHHHHHhccCC-----CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHH
Confidence 9999999999999999999997542 36799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCC----cceEEEecHHHHHHHHHHHHHHHHHH
Q 003056 242 FAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE----KDVRGFIKRDEFEQISAPILERVKRP 317 (852)
Q Consensus 242 l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~----~d~~~~itr~efe~l~~~~~~~i~~~ 317 (852)
|.++|..++++++..+++++.||+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++|+++|+++++++..+
T Consensus 260 ~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~ 339 (657)
T PTZ00186 260 ILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAP 339 (657)
T ss_pred HHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999876543 45889999999999999999999999
Q ss_pred HHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhhhcCCCcccceEEeeeccc
Q 003056 318 LEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPF 397 (852)
Q Consensus 318 i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ls~~~~~~~~~~~d~~~~ 397 (852)
++++|+.++++..+|+.|+||||+||||.|+++|+++||..+...+|||+|||+|||++|+++++. ++++.+.|++||
T Consensus 340 v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~--~~~~~l~Dv~p~ 417 (657)
T PTZ00186 340 CKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGD--VKGLVLLDVTPL 417 (657)
T ss_pred HHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccc--cCceEEEeeccc
Confidence 999999999999999999999999999999999999999878899999999999999999999975 568999999999
Q ss_pred cEEEEecCCCCcccCcCCCCCceEEEeeCCCCCCceEEEEEeecC----cEEEEEEEeccccC-CCCccceeEEEcCCCC
Q 003056 398 SISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSG----TFTVDVQYADVSEL-RAPAKISTYTIGPFQS 472 (852)
Q Consensus 398 ~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~----~~~i~~~y~~~~~~-~~~~~ig~~~i~~i~~ 472 (852)
+||+++.++ .+.+||+||++||++++.+|.+.. .+.|.| |+|++.+ .+|..||+|.|.++|+
T Consensus 418 slgie~~~g------------~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i-~qGe~~~~~~n~~lg~~~l~~ip~ 484 (657)
T PTZ00186 418 SLGIETLGG------------VFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKV-FQGEREMAADNQMMGQFDLVGIPP 484 (657)
T ss_pred cccceecCC------------EEEEEEeCCCEeeEEEeeccccccCCCceEEEEE-EEecccccccccccceEEEcCCCC
Confidence 999998875 688999999999999999888754 467777 4566666 8899999999999999
Q ss_pred CCCCcceEEEEEEEcCCccEEEEEeeeeeeeeecccccCCcchhhccccCCCCCCCCCCCCCCccccccccccCCCCCCC
Q 003056 473 TKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQG 552 (852)
Q Consensus 473 ~~~~~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (852)
.+.|.+.|+|+|.+|.||+|+|++. |
T Consensus 485 ~~~G~~~I~Vtf~iD~nGiL~V~a~-------------------------d----------------------------- 510 (657)
T PTZ00186 485 APRGVPQIEVTFDIDANGICHVTAK-------------------------D----------------------------- 510 (657)
T ss_pred CCCCCCcEEEEEEEcCCCEEEEEEE-------------------------E-----------------------------
Confidence 9888899999999999999999986 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 003056 553 TTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEA 632 (852)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs 632 (852)
+.+.+...+.|... .+|++++++++++.+.++...|+.++++.+++|.+|+
T Consensus 511 ---------------------------~~tg~~~~~~i~~~--~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 561 (657)
T PTZ00186 511 ---------------------------KATGKTQNITITAN--GGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAET 561 (657)
T ss_pred ---------------------------ccCCcEEEEEeccC--ccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 11122334555533 3699999999999999999999999999999999999
Q ss_pred HHHHhHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHhccchHHHH
Q 003056 633 YVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEER 697 (852)
Q Consensus 633 ~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~dg~~a~~~~~~~kl~~L~~~~~pi~~R 697 (852)
++|.++..|.+. ..+++++++.+...+...++||.. .+.+...|.+++++|++.+.++..+
T Consensus 562 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~l~~~~~~~~~~ 622 (657)
T PTZ00186 562 QLTTAERQLGEW--KYVSDAEKENVKTLVAELRKAMEN--PNVAKDDLAAATDKLQKAVMECGRT 622 (657)
T ss_pred HHHHHHHHhhhh--ccCCHHHHHHHHHHHHHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999642 468999999999999999999973 3456789999999999999998874
No 11
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=1e-95 Score=862.50 Aligned_cols=587 Identities=28% Similarity=0.467 Sum_probs=530.6
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEcC-CceeecHhhHhhhhcCCcchHHHHHHhhCCCCCCHHH
Q 003056 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGD-KQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (852)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~v 80 (852)
.|||||||||||+||++.+|.+.++.|..|.|.+||+|+|.+ +++++|..|+.+...+|.++++++|||||+.+.+ +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~--~ 80 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE--I 80 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--H
Confidence 599999999999999999999999999999999999999975 5799999999999999999999999999999865 5
Q ss_pred HHhhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHHH
Q 003056 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (852)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~Aa 160 (852)
....+.+||.++..++|.+.+.+...+ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 81 ~~~~~~~~~~v~~~~~g~i~~~~~~~~--~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa 158 (621)
T CHL00094 81 SEEAKQVSYKVKTDSNGNIKIECPALN--KDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAG 158 (621)
T ss_pred HhhhhcCCeEEEECCCCCEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 566678999999888888887765444 579999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHH
Q 003056 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (852)
Q Consensus 161 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~ 240 (852)
++|||++++||+||+|||++|++... .+.++|||||||||||+||+++.++.++|+++.|+.++||++||..|++
T Consensus 159 ~~AGl~v~~li~EptAAAlay~~~~~-----~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~ 233 (621)
T CHL00094 159 KIAGLEVLRIINEPTAASLAYGLDKK-----NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVN 233 (621)
T ss_pred HHcCCceEEEeccHHHHHHHhccccC-----CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHH
Confidence 99999999999999999999987542 3578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCC----cceEEEecHHHHHHHHHHHHHHHHH
Q 003056 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE----KDVRGFIKRDEFEQISAPILERVKR 316 (852)
Q Consensus 241 ~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~----~d~~~~itr~efe~l~~~~~~~i~~ 316 (852)
|+.++|..++++++..+++++.||+.+||++|+.||.+..+.+.+++++.+ .++...|||++||++|+++++++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~ 313 (621)
T CHL00094 234 WLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRI 313 (621)
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887542 5788999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhhhcCCCcccceEEeeecc
Q 003056 317 PLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFP 396 (852)
Q Consensus 317 ~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ls~~~~~~~~~~~d~~~ 396 (852)
+|+++|+.+++...+|+.|+||||+||||.|+++|+++||.++..++||++|||+|||++|+++++. ++++.+.|++|
T Consensus 314 ~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~--~~~~~~~d~~~ 391 (621)
T CHL00094 314 PVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGE--VKDILLLDVTP 391 (621)
T ss_pred HHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCC--ccceeeeeeec
Confidence 9999999999999999999999999999999999999999888899999999999999999999874 57899999999
Q ss_pred ccEEEEecCCCCcccCcCCCCCceEEEeeCCCCCCceEEEEEeecC----cEEEEEEEeccccC-CCCccceeEEEcCCC
Q 003056 397 FSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSG----TFTVDVQYADVSEL-RAPAKISTYTIGPFQ 471 (852)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~----~~~i~~~y~~~~~~-~~~~~ig~~~i~~i~ 471 (852)
|+||+++.++ .+.+|||+|+++|++++.+|.+.. .+.+.+ |+|+..+ .+|..||+|.|.+++
T Consensus 392 ~~lgi~~~~~------------~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i-~~ge~~~~~~n~~lg~~~i~~~~ 458 (621)
T CHL00094 392 LSLGVETLGG------------VMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHV-LQGERELAKDNKSLGTFRLDGIP 458 (621)
T ss_pred eeeeeeccCC------------EEEEEEeCCCccceeeeEEEEeccCCCcEEEEEE-EeeccccCCCCCEEEEEEEeCCC
Confidence 9999998765 688999999999999999988642 355555 5666666 789999999999999
Q ss_pred CCCCCcceEEEEEEEcCCccEEEEEeeeeeeeeecccccCCcchhhccccCCCCCCCCCCCCCCccccccccccCCCCCC
Q 003056 472 STKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQ 551 (852)
Q Consensus 472 ~~~~~~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (852)
+.+.+.+.|+|+|++|.||+|+|++.+.
T Consensus 459 ~~~~g~~~i~v~f~id~~Gil~v~~~~~---------------------------------------------------- 486 (621)
T CHL00094 459 PAPRGVPQIEVTFDIDANGILSVTAKDK---------------------------------------------------- 486 (621)
T ss_pred CCCCCCCcEEEEEEECCCCeEEEEEeec----------------------------------------------------
Confidence 8887878999999999999999998500
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 003056 552 GTTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVE 631 (852)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LE 631 (852)
.+.+...++|.. ..+|+.++++++++++.+|..+|+.++++.+++|.||
T Consensus 487 -----------------------------~t~~~~~~~i~~--~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le 535 (621)
T CHL00094 487 -----------------------------GTGKEQSITIQG--ASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAE 535 (621)
T ss_pred -----------------------------cCCceeeeeecc--chhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhH
Confidence 000112334432 2379999999999999999999999999999999999
Q ss_pred HHHHHhHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHhccchHHHHHHh
Q 003056 632 AYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKE 700 (852)
Q Consensus 632 s~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~dg~~a~~~~~~~kl~~L~~~~~pi~~R~~e 700 (852)
+|||.+|++|.+ +..++++++|++|.+.|+++++|||++ ..+.|++++++|++.++|+..+++.
T Consensus 536 ~~i~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~wl~~~----~~~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 536 SLCYQAEKQLKE-LKDKISEEKKEKIENLIKKLRQALQND----NYESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred HHHHHHHHHHHH-HhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999974 889999999999999999999999986 3479999999999999999986543
No 12
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=3.4e-95 Score=858.76 Aligned_cols=583 Identities=29% Similarity=0.495 Sum_probs=527.3
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEcCC-ceeecHhhHhhhhcCCcchHHHHHHhhCCCCCCHHH
Q 003056 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDK-QRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (852)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~~~-~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~v 80 (852)
.|||||||||||+||++.+|.+.++.|..|+|.+||+|+|.++ +++||..|..+..++|.++++++|||||+.+. .+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HH
Confidence 3899999999999999999999999999999999999999855 89999999999999999999999999999983 46
Q ss_pred HHhhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHHH
Q 003056 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (852)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~Aa 160 (852)
+...+++||. +..++|.+.+.+. + ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 79 ~~~~~~~~~~-v~~~~~~~~~~v~--~--~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa 153 (595)
T TIGR02350 79 TEEAKRVPYK-VVGDGGDVRVKVD--G--KEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAG 153 (595)
T ss_pred HHHhhcCCee-EEcCCCceEEEEC--C--EEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 7778899999 5566788777764 3 679999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHH
Q 003056 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (852)
Q Consensus 161 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~ 240 (852)
++|||++++||+||+|||++|++.+.. .+.++|||||||||||+|++++.++.++|+++.|+.++||++||..|++
T Consensus 154 ~~AGl~v~~li~EptAAAl~y~~~~~~----~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~ 229 (595)
T TIGR02350 154 KIAGLEVLRIINEPTAAALAYGLDKSK----KDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIID 229 (595)
T ss_pred HHcCCceEEEecchHHHHHHHhhcccC----CCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHH
Confidence 999999999999999999999986531 3689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCC----cceEEEecHHHHHHHHHHHHHHHHH
Q 003056 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE----KDVRGFIKRDEFEQISAPILERVKR 316 (852)
Q Consensus 241 ~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~----~d~~~~itr~efe~l~~~~~~~i~~ 316 (852)
||.++|..++++++..+++++.||+.+||++|+.||.+..+.+.+++++.+ .++.+.|||++|+++|+++++++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~ 309 (595)
T TIGR02350 230 WLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKE 309 (595)
T ss_pred HHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887643 5789999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhhhcCCCcccceEEeeecc
Q 003056 317 PLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFP 396 (852)
Q Consensus 317 ~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ls~~~~~~~~~~~d~~~ 396 (852)
+|+++|+.++++..+|+.|+||||+||||+|++.|+++||.++..++||++|||+|||++|+++++. ++++.+.|++|
T Consensus 310 ~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~--~~~~~~~d~~~ 387 (595)
T TIGR02350 310 PVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGD--VKDVLLLDVTP 387 (595)
T ss_pred HHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCC--cccceeeeccc
Confidence 9999999999999999999999999999999999999999888899999999999999999999886 67899999999
Q ss_pred ccEEEEecCCCCcccCcCCCCCceEEEeeCCCCCCceEEEEEeecCc----EEEEEEEeccccC-CCCccceeEEEcCCC
Q 003056 397 FSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSEL-RAPAKISTYTIGPFQ 471 (852)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~y~~~~~~-~~~~~ig~~~i~~i~ 471 (852)
|+||+++.++ .+.+||++|+++|++++.+|.+..+ +.+.+ |+|+..+ .+|..||+|.|++++
T Consensus 388 ~~igi~~~~~------------~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i-~~ge~~~~~~~~~lg~~~i~~~~ 454 (595)
T TIGR02350 388 LSLGIETLGG------------VMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHV-LQGERPMAADNKSLGRFELTGIP 454 (595)
T ss_pred ceeEEEecCC------------ceEEEEeCCCcCCccceEeeeccCCCCcEEEEEE-EeecccccccCcEeEEEEECCCC
Confidence 9999998765 5789999999999999999987554 34555 5566655 788899999999999
Q ss_pred CCCCCcceEEEEEEEcCCccEEEEEeeeeeeeeecccccCCcchhhccccCCCCCCCCCCCCCCccccccccccCCCCCC
Q 003056 472 STKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQ 551 (852)
Q Consensus 472 ~~~~~~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (852)
+.+.+.++|+|+|.+|.||+|+|++....
T Consensus 455 ~~~~g~~~i~v~f~~d~~G~l~v~~~~~~--------------------------------------------------- 483 (595)
T TIGR02350 455 PAPRGVPQIEVTFDIDANGILHVSAKDKG--------------------------------------------------- 483 (595)
T ss_pred CCCCCCceEEEEEEEcCCCeEEEEEEEcc---------------------------------------------------
Confidence 88777789999999999999999885100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 003056 552 GTTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVE 631 (852)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LE 631 (852)
+.+...+.+... .+||.++++++++++.+|...|+.++++.++||.||
T Consensus 484 ------------------------------~~~~~~~~i~~~--~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lE 531 (595)
T TIGR02350 484 ------------------------------TGKEQSITITAS--SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNAD 531 (595)
T ss_pred ------------------------------CCceEEEEeccc--cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 001223344332 379999999999999999999999999999999999
Q ss_pred HHHHHhHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHhccchHHHHH
Q 003056 632 AYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERY 698 (852)
Q Consensus 632 s~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~dg~~a~~~~~~~kl~~L~~~~~pi~~R~ 698 (852)
+|||.+|++|.+ +..++++++|++|.+.++++++|||++ +..+|++++++|+++++++..++
T Consensus 532 s~iy~~r~~l~~-~~~~~~~~e~~~l~~~l~~~~~wL~~~----d~~~i~~~~~~l~~~~~~~~~~~ 593 (595)
T TIGR02350 532 SLAYQAEKTLKE-AGDKLPAEEKEKIEKAVAELKEALKGE----DVEEIKAKTEELQQALQKLAEAM 593 (595)
T ss_pred HHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999963 688999999999999999999999975 56789999999999999988754
No 13
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-94 Score=806.64 Aligned_cols=601 Identities=32% Similarity=0.548 Sum_probs=557.2
Q ss_pred CeEEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEcCCceeecHhhHhhhhcCCcchHHHHHHhhCCCCCCHHH
Q 003056 1 MSVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (852)
Q Consensus 1 m~viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~v 80 (852)
|.+||||||||++||+++.++.++++.|+.|.|.+||+|+|.++++++|..|..+..+||.|+++++||++|+.++|+.+
T Consensus 7 ~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~v 86 (620)
T KOG0101|consen 7 SVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPEV 86 (620)
T ss_pred cceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccchhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHHH
Q 003056 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (852)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~Aa 160 (852)
+.++++|||.+....++.+.+.+.+.++.+.|+|+++.+++|.+++..|+.++|..+.++|+|||+||++.||+++.+|+
T Consensus 87 ~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A~ 166 (620)
T KOG0101|consen 87 QSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDAA 166 (620)
T ss_pred HhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHHH
Confidence 99999999999866677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHH
Q 003056 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (852)
Q Consensus 161 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~ 240 (852)
.+|||+++++|+||+||||+|++.+. . ....+|||+|+||||||++++.+.+|.+.|+++.++.++||.+||+.|++
T Consensus 167 ~iaGl~vlrii~EPtAaalAygl~k~-~--~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~ 243 (620)
T KOG0101|consen 167 LIAGLNVLRIINEPTAAALAYGLDKK-V--LGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVN 243 (620)
T ss_pred HhcCCceeeeecchHHHHHHhhcccc-c--cceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHH
Confidence 99999999999999999999998765 1 24788999999999999999999999889999999999999999999999
Q ss_pred HHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHH
Q 003056 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEK 320 (852)
Q Consensus 241 ~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~ 320 (852)
|+..+|+.+++.++..|+++++||+.+||++|+.||....+.+.|++|+++.||...|+|.+||.+|.+++.++..++..
T Consensus 244 h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~ 323 (620)
T KOG0101|consen 244 HFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEK 323 (620)
T ss_pred HHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcC-CCCcccCCchhHHHhhHHHhhhhhcCC--CcccceEEeeeccc
Q 003056 321 ALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFG-KEPRRTMNASECVARGCALQCAILSPT--FKVREFQVNESFPF 397 (852)
Q Consensus 321 ~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg-~~v~~~~n~deava~GAa~~aa~ls~~--~~~~~~~~~d~~~~ 397 (852)
+|++++++..+|+.|+||||++|+|.+|..|+++|+ +.+...+||||+||+|||++||.+++. ..+.++.+.|+.|.
T Consensus 324 ~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~pl 403 (620)
T KOG0101|consen 324 ALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPL 403 (620)
T ss_pred HHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeecccc
Confidence 999999999999999999999999999999999995 778899999999999999999999874 23478999999999
Q ss_pred cEEEEecCCCCcccCcCCCCCceEEEeeCCCCCCceEEEEEeecCc----EEEEEEEeccccC-CCCccceeEEEcCCCC
Q 003056 398 SISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSEL-RAPAKISTYTIGPFQS 472 (852)
Q Consensus 398 ~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~y~~~~~~-~~~~~ig~~~i~~i~~ 472 (852)
++||+..++ .+.++|++|+.+|++++.+|.+..| +.|.+ |++++.+ .+|..+|.|.+.|++|
T Consensus 404 ~~gve~a~~------------~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~V-yEger~~~kdn~~lg~feL~gipp 470 (620)
T KOG0101|consen 404 SLGVETAGG------------VFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQV-YEGERAMTKDNNLLGKFELTGIPP 470 (620)
T ss_pred cccccccCC------------cceeeeecccccceeeeeeeeeecCCCCceeEEE-EeccccccccccccceeeecCCCc
Confidence 999998876 7999999999999999988877554 44555 7777766 8999999999999999
Q ss_pred CCCCcceEEEEEEEcCCccEEEEEeeeeeeeeecccccCCcchhhccccCCCCCCCCCCCCCCccccccccccCCCCCCC
Q 003056 473 TKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQG 552 (852)
Q Consensus 473 ~~~~~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (852)
++.+.+.|.++|.+|.||+|+|++. |
T Consensus 471 aprgvp~IevtfdiD~ngiL~Vta~-------------------------d----------------------------- 496 (620)
T KOG0101|consen 471 APRGVPQIEVTFDIDANGILNVTAV-------------------------D----------------------------- 496 (620)
T ss_pred cccCCcceeEEEecCCCcEEEEeec-------------------------c-----------------------------
Confidence 9999999999999999999999986 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 003056 553 TTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEA 632 (852)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs 632 (852)
+.+.|...+.|.+.. +.||.++|++|....+.+..+|...+.+..++|.||+
T Consensus 497 ---------------------------~stgK~~~i~i~n~~-grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~ 548 (620)
T KOG0101|consen 497 ---------------------------KSTGKENKITITNDK-GRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLES 548 (620)
T ss_pred ---------------------------ccCCccceEEEeccc-ceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHH
Confidence 111222234444333 5799999999999999999999999999999999999
Q ss_pred HHHHhHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHhccchHHHHHHhh
Q 003056 633 YVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEF 701 (852)
Q Consensus 633 ~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~dg~~a~~~~~~~kl~~L~~~~~pi~~R~~e~ 701 (852)
|+|.++..+++.- ..++++++.++..+++++..||..+ ..+.+++|+.|..+|+..+.||..+++..
T Consensus 549 ~~f~~~~~~~~~~-~~i~~~~~~~~~~~~~~~i~wl~~~-~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 549 YAFNMKATVEDEK-GKINEEDKQKILDKCNEVINWLDKN-QLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred HHHhhhhhhhhhc-cccChhhhhhHHHHHHHHHHHhhhc-ccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 9999999997544 8999999999999999999999987 55569999999999999999999987654
No 14
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=2.9e-92 Score=827.88 Aligned_cols=575 Identities=27% Similarity=0.453 Sum_probs=517.8
Q ss_pred EEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEcCC-ceeecHhhHhhhhcCCcchHHHHHHhhCCCCCCHHHH
Q 003056 3 VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDK-QRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQ 81 (852)
Q Consensus 3 viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~~~-~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~v~ 81 (852)
+||||||||||+||++.+|.++++.|..|.|.+||+|+|.++ .++||..|..++.++|.++++++|||||+.+.++.
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~-- 78 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIK-- 78 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchh--
Confidence 589999999999999999999999999999999999999765 89999999999999999999999999999987753
Q ss_pred HhhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHHHH
Q 003056 82 RDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAAT 161 (852)
Q Consensus 82 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~Aa~ 161 (852)
. .+.+||.++...+|.+.+.+.. ..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||+
T Consensus 79 ~-~~~~~~~~~~~~~~~~~~~~~~----~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 79 T-FSILPYRFVDGPGEMVRLRTVQ----GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred h-cccCCEEEEEcCCCceEEEeCC----CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 2 5678999988888888887642 2689999999999999999999999999999999999999999999999999
Q ss_pred HcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHHH
Q 003056 162 IAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQH 241 (852)
Q Consensus 162 ~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~ 241 (852)
+|||++++||+||+|||++|++.+. .+.++|||||||||||+|++++.++.++|+++.|+.++||++||..|++|
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~~-----~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~ 228 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDKA-----SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKW 228 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhccC-----CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999997653 36789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 003056 242 FAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKA 321 (852)
Q Consensus 242 l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~ 321 (852)
|.++ ++++...+++++.+|+.+||++|+.||.+..+.+.++. ++.++.+.|||++|+++|+++++++..+|+++
T Consensus 229 l~~~----~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~ 302 (599)
T TIGR01991 229 ILKQ----LGISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRA 302 (599)
T ss_pred HHHh----hCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHH
Confidence 9865 45666678999999999999999999999988888874 78899999999999999999999999999999
Q ss_pred HHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhhhcCCCcccceEEeeeccccEEE
Q 003056 322 LAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISL 401 (852)
Q Consensus 322 l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ls~~~~~~~~~~~d~~~~~i~i 401 (852)
|+.+++...+|+.|+||||+||||+|+++|+++||..+..++||++|||+|||++|+++++.++.+++.+.|++||+||+
T Consensus 303 L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~~~~~l~dv~p~slgi 382 (599)
T TIGR01991 303 LRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGI 382 (599)
T ss_pred HHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccccCceEEEEeeeeeeEE
Confidence 99999999999999999999999999999999999888889999999999999999999998888899999999999999
Q ss_pred EecCCCCcccCcCCCCCceEEEeeCCCCCCceEEEEEee--cCc--EEEEEEEeccccC-CCCccceeEEEcCCCCCCCC
Q 003056 402 SWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYR--SGT--FTVDVQYADVSEL-RAPAKISTYTIGPFQSTKSE 476 (852)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~--~~~--~~i~~~y~~~~~~-~~~~~ig~~~i~~i~~~~~~ 476 (852)
++.++ .+.+||++|+++|++++..|.+ ++. +.+.+ |+|+..+ .+|..||+|.|.++++.+.|
T Consensus 383 ~~~~g------------~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i-~qGe~~~~~~n~~lg~~~l~~i~~~~~g 449 (599)
T TIGR01991 383 ETMGG------------LVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHV-VQGERELVEDCRSLARFELRGIPPMVAG 449 (599)
T ss_pred EecCC------------EEEEEEeCCCcCCccceEEEEEccCCCeEEEEEE-EeecccccccCceEEEEEEcCCCCCCCC
Confidence 99865 6889999999999999887765 333 44444 6677666 88999999999999998888
Q ss_pred cceEEEEEEEcCCccEEEEEeeeeeeeeecccccCCcchhhccccCCCCCCCCCCCCCCccccccccccCCCCCCCCCCC
Q 003056 477 RAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQGTTDA 556 (852)
Q Consensus 477 ~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (852)
.++|+|+|++|.||+|+|++. +
T Consensus 450 ~~~i~v~f~id~~gil~V~a~-------------------------~--------------------------------- 471 (599)
T TIGR01991 450 AARIRVTFQVDADGLLTVSAQ-------------------------E--------------------------------- 471 (599)
T ss_pred CCcEEEEEEECCCCeEEEEEE-------------------------E---------------------------------
Confidence 889999999999999999985 0
Q ss_pred CCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 003056 557 PGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYD 636 (852)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~ 636 (852)
+.+.++..+.|... .+|+.++++++.+++.++..+|+.++++.+++|.+|+|+|.
T Consensus 472 -----------------------~~t~~~~~~~i~~~--~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 526 (599)
T TIGR01991 472 -----------------------QSTGVEQSIQVKPS--YGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEA 526 (599)
T ss_pred -----------------------CCCCcEEEEecccc--cCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 00011122344332 36999999999999999999999999999999999999999
Q ss_pred hHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHhccchHHH
Q 003056 637 MRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEE 696 (852)
Q Consensus 637 ~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~dg~~a~~~~~~~kl~~L~~~~~pi~~ 696 (852)
++..+. ++..++++++|+++...++++++||+++ ....+++++++|++.+.++..
T Consensus 527 ~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~----~~~~~~~~~~~l~~~~~~~~~ 581 (599)
T TIGR01991 527 LQAALA-ADGDLLSEDERAAIDAAMEALQKALQGD----DADAIKAAIEALEEATDNFAA 581 (599)
T ss_pred HHHHHH-HhhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHH
Confidence 999885 3567899999999999999999999975 457889999999999988876
No 15
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=5e-92 Score=839.89 Aligned_cols=594 Identities=40% Similarity=0.679 Sum_probs=534.3
Q ss_pred EEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEcCCceeecHhhHhhhhcCCcchHHHHHHhhCCCCCCHHHHH
Q 003056 3 VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQR 82 (852)
Q Consensus 3 viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~v~~ 82 (852)
||||||||+||+||++.++.++++.|..|+|++||+|+|.+++++||..|...+.++|+++++++|||||+.++++.++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHHHHH
Q 003056 83 DLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATI 162 (852)
Q Consensus 83 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~Aa~~ 162 (852)
+.+.+||.++.+++|.+.+.+.+.|....++|+++++++|++|++.++.+++..+.++|||||++|++.||++|++||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~ 160 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAEL 160 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccccccc
Confidence 99999999999989999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHHHH
Q 003056 163 AGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHF 242 (852)
Q Consensus 163 AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l 242 (852)
|||++++||+||+|||++|++.+.. .+.++|||||||||+|++++++.++.++++++.++..+||++||.+|++|+
T Consensus 161 agl~~~~li~Ep~Aaa~~y~~~~~~----~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~ 236 (602)
T PF00012_consen 161 AGLNVLRLINEPTAAALAYGLERSD----KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYL 236 (602)
T ss_dssp TT-EEEEEEEHHHHHHHHTTTTSSS----SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccc----cccceeccccccceEeeeehhcccccccccccccccccccceecceeeccc
Confidence 9999999999999999999887643 478999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCC--CCcccEEEecccC-CcceEEEecHHHHHHHHHHHHHHHHHHHH
Q 003056 243 AAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSA--NPEAPLNIECLME-EKDVRGFIKRDEFEQISAPILERVKRPLE 319 (852)
Q Consensus 243 ~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~--~~~~~i~ie~l~~-~~d~~~~itr~efe~l~~~~~~~i~~~i~ 319 (852)
.++|..++++++..+++++.||+.+|+++|+.||. +.+..+.++++.+ |.++.+.|||++|+++|+++++++..+|+
T Consensus 237 ~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~ 316 (602)
T PF00012_consen 237 LEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIE 316 (602)
T ss_dssp HHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceecccccccccccccccc
Confidence 99999999999999999999999999999999999 6677888888888 88999999999999999999999999999
Q ss_pred HHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhhhcCCCcccceEEeeeccccE
Q 003056 320 KALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSI 399 (852)
Q Consensus 320 ~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ls~~~~~~~~~~~d~~~~~i 399 (852)
++|+.++++..+|+.|+||||+||+|+|++.|++.||..+..++||++|||+|||++|+.+++.++++++.+.|++|++|
T Consensus 317 ~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~~~~~~ 396 (602)
T PF00012_consen 317 KALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDVTPFSI 396 (602)
T ss_dssp HHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEBESSEE
T ss_pred cccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccccccccccccccccccc
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred EEEecCCCCcccCcCCCCCceEEEeeCCCCCCceEEEEEeecC----cEEEEEEEeccccCCCCccceeEEEcCCCCCCC
Q 003056 400 SLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSG----TFTVDVQYADVSELRAPAKISTYTIGPFQSTKS 475 (852)
Q Consensus 400 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~----~~~i~~~y~~~~~~~~~~~ig~~~i~~i~~~~~ 475 (852)
||.+.++ .+..++++|+++|+.+...|.... .|.+.++|++.....++..||+|.|.++++.+.
T Consensus 397 ~i~~~~~------------~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~ 464 (602)
T PF00012_consen 397 GIEVSNG------------KFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPK 464 (602)
T ss_dssp EEEETTT------------EEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSST
T ss_pred ccccccc------------ccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccc
Confidence 9998875 678999999999999886665432 588888765544447789999999999998878
Q ss_pred CcceEEEEEEEcCCccEEEEEeeeeeeeeecccccCCcchhhccccCCCCCCCCCCCCCCccccccccccCCCCCCCCCC
Q 003056 476 ERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQGTTD 555 (852)
Q Consensus 476 ~~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (852)
+.++|+|+|++|.+|+|+|..+.+...
T Consensus 465 g~~~i~v~f~ld~~Gil~V~~~~~~~~----------------------------------------------------- 491 (602)
T PF00012_consen 465 GKPKIKVTFELDENGILSVEAAEVETG----------------------------------------------------- 491 (602)
T ss_dssp TSSEEEEEEEEETTSEEEEEEEETTTT-----------------------------------------------------
T ss_pred cccceeeEEeeeeeeehhhhhcccccc-----------------------------------------------------
Confidence 888999999999999999999733210
Q ss_pred CCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 003056 556 APGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVY 635 (852)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy 635 (852)
....+.+.... .++.++++++.+++.++...|+.++++.+++|.||+|+|
T Consensus 492 ----------------------------~~~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~ 541 (602)
T PF00012_consen 492 ----------------------------KEEEVTVKKKE--TLSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIY 541 (602)
T ss_dssp ----------------------------EEEEEEEESSS--SSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------ccccccccccc--ccccccccccccccchhhhhhhhhhhccccHHHHHHHHH
Confidence 11122333222 489999999999999999999999999999999999999
Q ss_pred HhHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHhccchHHHHHH
Q 003056 636 DMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYK 699 (852)
Q Consensus 636 ~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~dg~~a~~~~~~~kl~~L~~~~~pi~~R~~ 699 (852)
++|+.|++. ..+++++++ .++|+++.+||++++.+++.++|++|+++|+++++||..|++
T Consensus 542 ~~r~~l~~~-~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~ 601 (602)
T PF00012_consen 542 ELRDKLEED-KDFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYM 601 (602)
T ss_dssp HHHHHHTCC-GGGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhh-hccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999765 677787777 899999999999998899999999999999999999999986
No 16
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=7.2e-91 Score=817.44 Aligned_cols=575 Identities=25% Similarity=0.432 Sum_probs=513.8
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEcCCceeecHhhHhhhhcCCcchHHHHHHhhCCCCCCHHHH
Q 003056 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPELQ 81 (852)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~v~ 81 (852)
.+||||||||||+||++.+|.++++.|..|+|.+||+|+|.+++++||..|..+..++|.++++++|||||+.+.+. +
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~--~ 97 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLADI--Q 97 (616)
T ss_pred eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchhh--h
Confidence 47999999999999999999999999999999999999999888999999999999999999999999999998763 4
Q ss_pred HhhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHHHH
Q 003056 82 RDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAAT 161 (852)
Q Consensus 82 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~Aa~ 161 (852)
.....+||.+....+|.+.+.+. + ..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||+
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~~~--~--~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~ 173 (616)
T PRK05183 98 QRYPHLPYQFVASENGMPLIRTA--Q--GLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAAR 173 (616)
T ss_pred hhhhcCCeEEEecCCCceEEEec--C--CeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 45667899988877888877764 2 3789999999999999999999999999999999999999999999999999
Q ss_pred HcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHHH
Q 003056 162 IAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQH 241 (852)
Q Consensus 162 ~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~ 241 (852)
+|||++++||+||+|||++|++.+. .+.++||||+||||||+|++++.++.++|+++.|+.++||++||..|++|
T Consensus 174 ~AGl~v~~li~EPtAAAlay~~~~~-----~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~ 248 (616)
T PRK05183 174 LAGLNVLRLLNEPTAAAIAYGLDSG-----QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADW 248 (616)
T ss_pred HcCCCeEEEecchHHHHHHhhcccC-----CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 9999999999999999999997642 36789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 003056 242 FAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKA 321 (852)
Q Consensus 242 l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~ 321 (852)
+.++| +.+...+++++.+|+.+|+++|+.||.+..+.+.+.. +...|||++|+++|+++++++..+|+++
T Consensus 249 ~~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~------~~~~itr~efe~l~~~l~~~~~~~i~~~ 318 (616)
T PRK05183 249 ILEQA----GLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVAL------WQGEITREQFNALIAPLVKRTLLACRRA 318 (616)
T ss_pred HHHHc----CCCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEec------CCCeEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99876 3455578999999999999999999999988888853 2235999999999999999999999999
Q ss_pred HHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhhhcCCCcccceEEeeeccccEEE
Q 003056 322 LAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISL 401 (852)
Q Consensus 322 l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ls~~~~~~~~~~~d~~~~~i~i 401 (852)
|+++++...+|+.|+||||+||||+|++.|+++||..+..++|||+|||+|||++|+++++.+.++++.+.|++||+||+
T Consensus 319 L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~~~l~dv~p~slgi 398 (616)
T PRK05183 319 LRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGL 398 (616)
T ss_pred HHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccccCceEEEeeccccccc
Confidence 99999999999999999999999999999999999877789999999999999999999998888899999999999999
Q ss_pred EecCCCCcccCcCCCCCceEEEeeCCCCCCceEEEEEeec--Cc--EEEEEEEeccccC-CCCccceeEEEcCCCCCCCC
Q 003056 402 SWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRS--GT--FTVDVQYADVSEL-RAPAKISTYTIGPFQSTKSE 476 (852)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~--~~--~~i~~~y~~~~~~-~~~~~ig~~~i~~i~~~~~~ 476 (852)
++.++ .+.+|||+|+++|++++..|... +. +.+.+ |+|++.+ .+|..||+|.|.++++.+.+
T Consensus 399 ~~~~g------------~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v-~qGe~~~~~~n~~lg~~~i~~i~~~~~g 465 (616)
T PRK05183 399 ETMGG------------LVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHV-VQGERELVADCRSLARFELRGIPPMAAG 465 (616)
T ss_pred eecCC------------eEEEEEeCCCcccccccEEEEeccCCCeEEEEEE-ecccccccccccEEEEEEeCCCCCCCCC
Confidence 98765 67899999999999998887653 33 44444 5677766 88999999999999998888
Q ss_pred cceEEEEEEEcCCccEEEEEeeeeeeeeecccccCCcchhhccccCCCCCCCCCCCCCCccccccccccCCCCCCCCCCC
Q 003056 477 RAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQGTTDA 556 (852)
Q Consensus 477 ~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (852)
.++|+|+|++|.||+|+|++. +
T Consensus 466 ~~~i~v~f~~d~~Gil~V~a~-------------------------~--------------------------------- 487 (616)
T PRK05183 466 AARIRVTFQVDADGLLSVTAM-------------------------E--------------------------------- 487 (616)
T ss_pred CccEEEEEEECCCCeEEEEEE-------------------------E---------------------------------
Confidence 889999999999999999985 0
Q ss_pred CCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 003056 557 PGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYD 636 (852)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~ 636 (852)
+.+.+...+.|... .+|+.++++++++++.++..+|+..+++.+++|.+|+|+|.
T Consensus 488 -----------------------~~~~~~~~~~i~~~--~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~ 542 (616)
T PRK05183 488 -----------------------KSTGVEASIQVKPS--YGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEA 542 (616)
T ss_pred -----------------------cCCCcEEEeccccc--ccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 00111223444322 26999999999999999999999999999999999999999
Q ss_pred hHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHhccchHHHHH
Q 003056 637 MRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERY 698 (852)
Q Consensus 637 ~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~dg~~a~~~~~~~kl~~L~~~~~pi~~R~ 698 (852)
++++|.+ ....+++++|+++...++++++||..+ +...|++++++|++.+.++..+.
T Consensus 543 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~----d~~~~~~~~~~l~~~~~~~~~~~ 599 (616)
T PRK05183 543 LQAALAA-DGDLLSAAERAAIDAAMAALREVAQGD----DADAIEAAIKALDKATQEFAARR 599 (616)
T ss_pred HHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999953 346889999999999999999999754 66899999999999999998743
No 17
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-88 Score=721.66 Aligned_cols=589 Identities=28% Similarity=0.493 Sum_probs=536.7
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEc-CCceeecHhhHhhhhcCCcchHHHHHHhhCCCCCCHHH
Q 003056 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFG-DKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (852)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~-~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~v 80 (852)
+|+|||+||||||++++.++.+.++.|..|.|.+||+|+|. ++++++|..|+.++..||.|+++.-||+|||++.|+.+
T Consensus 28 ~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~ev 107 (640)
T KOG0102|consen 28 KVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPEV 107 (640)
T ss_pred ceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCHHH
Confidence 48999999999999999999999999999999999999995 45899999999999999999999999999999999999
Q ss_pred HHhhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHHH
Q 003056 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (852)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~Aa 160 (852)
+.+++..||+++...+|...++. +...++|.++.+++|.+++..|+.+++..+..+|+|||+||++.||+++++|.
T Consensus 108 q~~~k~vpyKiVk~~ngdaw~e~----~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag 183 (640)
T KOG0102|consen 108 QKDIKQVPYKIVKASNGDAWVEA----RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAG 183 (640)
T ss_pred HHHHHhCCcceEEccCCcEEEEe----CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhh
Confidence 99999999999999899887775 34789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHH
Q 003056 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (852)
Q Consensus 161 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~ 240 (852)
++||+++++++|||+|||++|++.+.. ...++|||+||||||++|+.+.+|.|+|.++.+|.++||.|||..+.+
T Consensus 184 ~iagl~vlrvineptaaalaygld~k~-----~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~ 258 (640)
T KOG0102|consen 184 QIAGLNVLRVINEPTAAALAYGLDKKE-----DGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVR 258 (640)
T ss_pred hhccceeeccCCccchhHHhhcccccC-----CCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHH
Confidence 999999999999999999999997652 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCC----cceEEEecHHHHHHHHHHHHHHHHH
Q 003056 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEE----KDVRGFIKRDEFEQISAPILERVKR 316 (852)
Q Consensus 241 ~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~----~d~~~~itr~efe~l~~~~~~~i~~ 316 (852)
|+..+|+...++++..+.+++.||+.++|++|+.||......++++.+..| ..+++.+||.+||+++.+++.|.+.
T Consensus 259 ~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~ 338 (640)
T KOG0102|consen 259 FIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIE 338 (640)
T ss_pred HHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhh
Confidence 999999999899999999999999999999999999999999999988776 6799999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhhhcCCCcccceEEeeecc
Q 003056 317 PLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFP 396 (852)
Q Consensus 317 ~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ls~~~~~~~~~~~d~~~ 396 (852)
++.++|++|++..+||+.|+||||.+|+|.|++.+++.||......+||||+||.|||++++.+++. |+++.+.|++|
T Consensus 339 p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~ge--VkdvlLLdVtp 416 (640)
T KOG0102|consen 339 PCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGE--VKDVLLLDVTP 416 (640)
T ss_pred HHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhcc--ccceeeeecch
Confidence 9999999999999999999999999999999999999999999999999999999999999999986 78999999999
Q ss_pred ccEEEEecCCCCcccCcCCCCCceEEEeeCCCCCCceEEEEEeecCc----EEEEEEEeccccC-CCCccceeEEEcCCC
Q 003056 397 FSISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSEL-RAPAKISTYTIGPFQ 471 (852)
Q Consensus 397 ~~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~y~~~~~~-~~~~~ig~~~i~~i~ 471 (852)
+++||++-++ .+..|++|++.||++++-.|.+..+ ..+.+ +++++.+ .+|..+|+|.+.|+|
T Consensus 417 LsLgietlgg------------vft~Li~rnttIptkksqvfstaadgqt~V~ikv-~qgere~~~dnk~lG~f~l~gip 483 (640)
T KOG0102|consen 417 LSLGIETLGG------------VFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKV-FQGEREMVNDNKLLGSFILQGIP 483 (640)
T ss_pred HHHHHHhhhh------------hheecccCCcccCchhhhheeecccCCceEEEEe-eechhhhhccCcccceeeecccC
Confidence 9999998887 6889999999999999988877432 44555 5677777 899999999999999
Q ss_pred CCCCCcceEEEEEEEcCCccEEEEEeeeeeeeeecccccCCcchhhccccCCCCCCCCCCCCCCccccccccccCCCCCC
Q 003056 472 STKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQ 551 (852)
Q Consensus 472 ~~~~~~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (852)
|.+++.+.|.|+|.+|.|||++|++. |
T Consensus 484 p~pRgvpqieVtfDIdanGI~~vsA~-------------------------d---------------------------- 510 (640)
T KOG0102|consen 484 PAPRGVPQIEVTFDIDANGIGTVSAK-------------------------D---------------------------- 510 (640)
T ss_pred CCCCCCCceeEEEeecCCceeeeehh-------------------------h----------------------------
Confidence 99999999999999999999999986 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Q 003056 552 GTTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVE 631 (852)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LE 631 (852)
|-+.|..++.+.... +||..+++.|++..+.+...|+.++++.+..|..+
T Consensus 511 ----------------------------k~t~K~qsi~i~~sg--gLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~ 560 (640)
T KOG0102|consen 511 ----------------------------KGTGKSQSITIASSG--GLSKDEIELMVGEAERLASTDKEKREAIETKNKAD 560 (640)
T ss_pred ----------------------------cccCCccceEEeecC--CCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchh
Confidence 111122345555443 79999999999999999999999999999999999
Q ss_pred HHHHHhHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHhccchHHHHHH
Q 003056 632 AYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYK 699 (852)
Q Consensus 632 s~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~dg~~a~~~~~~~kl~~L~~~~~pi~~R~~ 699 (852)
+++|+....+. .|.+..+.++..+|...+....+.+-.- ...+.+....+...|++...|+..-++
T Consensus 561 s~~~~te~~~~-~~~~~~~~~~~~~i~~~i~~l~~~~~~~-~~~~~~~~k~~~~~l~q~~lkl~es~~ 626 (640)
T KOG0102|consen 561 SIIYDTEKSLK-EFEEKIPAEECEKLEEKISDLRELVANK-DSGDMEEIKKAMSALQQASLKLFESAY 626 (640)
T ss_pred heecCchhhhh-hhhhhCcHHHHHHHHHHHHHHHHHHhhh-ccCChhhHHHHHHHHHHhhhHHHHHHH
Confidence 99999999885 5777888888889999999999888421 122336777778888877777765433
No 18
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2.9e-85 Score=762.68 Aligned_cols=549 Identities=21% Similarity=0.330 Sum_probs=468.0
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEcCCceeecHhhHhhhhcCCcchHHHHHHhhCCCCCCH---
Q 003056 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDP--- 78 (852)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~--- 78 (852)
.+||||||||||+||++.+|+++|+.|..|+|.+||+|+|.++++++|..| +++++|||||+.+.+.
T Consensus 20 ~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~~ 89 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILNT 89 (595)
T ss_pred eEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhccc
Confidence 389999999999999999999999999999999999999998889999987 7999999999998752
Q ss_pred -HHHHhhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHH
Q 003056 79 -ELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVI 157 (852)
Q Consensus 79 -~v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~ 157 (852)
.+....+. .....++.+. +...+ ..++|+++++++|++|++.|+.++|.++.++|||||+||++.||++++
T Consensus 90 ~~~~~~~k~----~~~~~~~~~~--~~~~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~ 161 (595)
T PRK01433 90 PALFSLVKD----YLDVNSSELK--LNFAN--KQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVM 161 (595)
T ss_pred hhhHhhhhh----eeecCCCeeE--EEECC--EEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHH
Confidence 22211111 1112223333 33333 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHH
Q 003056 158 DAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEV 237 (852)
Q Consensus 158 ~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~ 237 (852)
+||++|||++++||+||+|||++|++.+. ....+|||||||||||+|++++.++.++|++++|+.++||++||.+
T Consensus 162 ~Aa~~AGl~v~~li~EPtAAAlay~~~~~-----~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~ 236 (595)
T PRK01433 162 LAAKIAGFEVLRLIAEPTAAAYAYGLNKN-----QKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVV 236 (595)
T ss_pred HHHHHcCCCEEEEecCcHHHHHHHhcccC-----CCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHH
Confidence 99999999999999999999999997642 2568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHH
Q 003056 238 LFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRP 317 (852)
Q Consensus 238 l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~ 317 (852)
|++|+..+|.. ..+.+ .++.|+++|+.||.+....+ ..+.|||++|+++|+++++++..+
T Consensus 237 l~~~~~~~~~~------~~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~ 296 (595)
T PRK01433 237 ITQYLCNKFDL------PNSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTINI 296 (595)
T ss_pred HHHHHHHhcCC------CCCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHHH
Confidence 99999987732 22222 23459999999998775321 167899999999999999999999
Q ss_pred HHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhhhcCCCcccceEEeeeccc
Q 003056 318 LEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPF 397 (852)
Q Consensus 318 i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ls~~~~~~~~~~~d~~~~ 397 (852)
|+++|++++ ..+|+.|+||||+||||+|++.|+++||.++..++||++|||+|||++|++++..+ +++.+.|++|+
T Consensus 297 i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~--~~~~l~Dv~p~ 372 (595)
T PRK01433 297 AQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPH--TNSLLIDVVPL 372 (595)
T ss_pred HHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCc--cceEEEEeccc
Confidence 999999998 57899999999999999999999999998888899999999999999999998754 57899999999
Q ss_pred cEEEEecCCCCcccCcCCCCCceEEEeeCCCCCCceEEEEEeecC----cEEEEEEEeccccC-CCCccceeEEEcCCCC
Q 003056 398 SISLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSG----TFTVDVQYADVSEL-RAPAKISTYTIGPFQS 472 (852)
Q Consensus 398 ~i~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~----~~~i~~~y~~~~~~-~~~~~ig~~~i~~i~~ 472 (852)
+||+++.++ .+.+||+||+++|++++..|.+.. .+.+.+ |+|+..+ .+|..||+|.|.|+++
T Consensus 373 slgi~~~~g------------~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v-~qGe~~~~~~n~~lg~~~l~~i~~ 439 (595)
T PRK01433 373 SLGMELYGG------------IVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHI-LQGEREMAADCRSLARFELKGLPP 439 (595)
T ss_pred ceEEEecCC------------EEEEEEECCCcccceeeEEeEeecCCCeEEEEEE-EeccccccCCCcEEEEEEEcCCCC
Confidence 999999875 688999999999999887776532 345555 6777766 8899999999999999
Q ss_pred CCCCcceEEEEEEEcCCccEEEEEeeeeeeeeecccccCCcchhhccccCCCCCCCCCCCCCCccccccccccCCCCCCC
Q 003056 473 TKSERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQG 552 (852)
Q Consensus 473 ~~~~~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (852)
.+.|.++|+|+|.+|.||+|+|++. +
T Consensus 440 ~~~g~~~i~vtf~id~~Gil~V~a~-------------------------~----------------------------- 465 (595)
T PRK01433 440 MKAGSIRAEVTFAIDADGILSVSAY-------------------------E----------------------------- 465 (595)
T ss_pred CCCCCccEEEEEEECCCCcEEEEEE-------------------------E-----------------------------
Confidence 8888889999999999999999986 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 003056 553 TTDAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEA 632 (852)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs 632 (852)
+.+.++..+.|... .+|+.++++++++++.++...|..++++.+++|.+|+
T Consensus 466 ---------------------------~~t~~~~~~~i~~~--~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 516 (595)
T PRK01433 466 ---------------------------KISNTSHAIEVKPN--HGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEA 516 (595)
T ss_pred ---------------------------cCCCcEEEEEecCC--CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 11112334455433 3699999999999999999999999999999999999
Q ss_pred HHHHhHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHhccch-HHHHH
Q 003056 633 YVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDP-IEERY 698 (852)
Q Consensus 633 ~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~dg~~a~~~~~~~kl~~L~~~~~p-i~~R~ 698 (852)
++|.++..+.+ +...+++++|+.+.+.+++.++||..+ ....+.+++++|+....+ +..|+
T Consensus 517 ~~~~~~~~~~~-~~~~l~~~~~~~i~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 578 (595)
T PRK01433 517 LIFNIERAIAE-LTTLLSESEISIINSLLDNIKEAVHAR----DIILINNSIKEFKSKIKKSMDTKL 578 (595)
T ss_pred HHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999964 666789999999999999999999743 556777777777777777 44443
No 19
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-84 Score=749.03 Aligned_cols=566 Identities=31% Similarity=0.502 Sum_probs=515.4
Q ss_pred eEEEEEcCccceEEEEEECC-ceEEEeCCCCCccceEEEEEcCCc-eeecHhhHhhhhcCCcchHHHHHHhhCCCCCCHH
Q 003056 2 SVVGFDLGNESCIVAVARQR-GIDVVLNDESKRETPSIVCFGDKQ-RFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPE 79 (852)
Q Consensus 2 ~viGID~GTt~s~va~~~~~-~~~iv~n~~~~r~~Ps~V~~~~~~-~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~ 79 (852)
.+||||||||||+||+++++ .+.++.|..|.|.+||+|+|..++ +++|..|+.++..+|.++++.+||++|+...
T Consensus 6 ~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~--- 82 (579)
T COG0443 6 KAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN--- 82 (579)
T ss_pred eEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC---
Confidence 48999999999999999988 799999999999999999998764 9999999999999999999999999998611
Q ss_pred HHHhhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHH
Q 003056 80 LQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDA 159 (852)
Q Consensus 80 v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~A 159 (852)
+ ..+.+...| +.++|++|++++|.+|++.|+.+++..+.++|||||+||++.||+++++|
T Consensus 83 -----------------~-~~~~~~~~~--~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A 142 (579)
T COG0443 83 -----------------G-LKISVEVDG--KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDA 142 (579)
T ss_pred -----------------C-CcceeeeCC--eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHH
Confidence 1 111222233 68999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHH
Q 003056 160 ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLF 239 (852)
Q Consensus 160 a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~ 239 (852)
+++|||++++|++||+|||++|++.+. .+..|||||+||||||+||+++..|.++|+++.||.+|||++||.+|+
T Consensus 143 ~~iaGl~vlrlinEPtAAAlayg~~~~-----~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~ 217 (579)
T COG0443 143 ARIAGLNVLRLINEPTAAALAYGLDKG-----KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALI 217 (579)
T ss_pred HHHcCCCeEEEecchHHHHHHhHhccC-----CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHH
Confidence 999999999999999999999999765 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHH
Q 003056 240 QHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLE 319 (852)
Q Consensus 240 ~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~ 319 (852)
+|+..+|..++++++..++++++||+.+|+++|+.||.+.++.++++++..+.++...|||++||.++.+++.++..++.
T Consensus 218 ~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~ 297 (579)
T COG0443 218 DYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVE 297 (579)
T ss_pred HHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888899999999999999999999999999
Q ss_pred HHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhhhcCCCcccceEEeeeccccE
Q 003056 320 KALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSI 399 (852)
Q Consensus 320 ~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ls~~~~~~~~~~~d~~~~~i 399 (852)
++|.+++++..+|+.|+||||++|||.|++.|+++||.++...+|||++||+|||++|+.+++... ++.+.|++|+++
T Consensus 298 ~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~--d~ll~Dv~plsl 375 (579)
T COG0443 298 QALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVP--DVLLLDVIPLSL 375 (579)
T ss_pred HHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCccc--CceEEeeeeecc
Confidence 999999999999999999999999999999999999999999999999999999999999998755 899999999999
Q ss_pred EEEecCCCCcccCcCCCCCceEEEeeCCCCCCceEEEEEeecCc----EEEEEEEeccccC-CCCccceeEEEcCCCCCC
Q 003056 400 SLSWKGSAPEAQNETGDNQQSTTVFPKGNPIPSVKALTFYRSGT----FTVDVQYADVSEL-RAPAKISTYTIGPFQSTK 474 (852)
Q Consensus 400 ~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~P~~k~~~~~~~~~----~~i~~~y~~~~~~-~~~~~ig~~~i~~i~~~~ 474 (852)
|+++.++ .+..|+++|+.+|.++.-.|.+..| ..+.+ ++++..+ .+|..+|.|.+.++++.+
T Consensus 376 gie~~~~------------~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v-~qge~~~~~~~~~lg~f~l~~i~~~~ 442 (579)
T COG0443 376 GIETLGG------------VRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHV-FQGEREMAADNKSLGRFELDGIPPAP 442 (579)
T ss_pred ccccCcc------------hhhhHHhcCCCCCcccceEEEeecCCCceeEEEE-EecchhhcccCceeEEEECCCCCCCC
Confidence 9998875 6788999999999999888876544 33444 5677776 899999999999999999
Q ss_pred CCcceEEEEEEEcCCccEEEEEeeeeeeeeecccccCCcchhhccccCCCCCCCCCCCCCCccccccccccCCCCCCCCC
Q 003056 475 SERAKVKVKVRLNMHGIVSIESATLLEEEEVEVPVTKEPEKEAAKMETDEVPSDAAPPSSSETDVNMQDAKGTADAQGTT 554 (852)
Q Consensus 475 ~~~~~i~v~~~~d~~Gil~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (852)
.+.+.|.|+|.+|.||+++|++. |
T Consensus 443 ~g~~~i~v~f~iD~~gi~~v~a~-------------------------~------------------------------- 466 (579)
T COG0443 443 RGVPQIEVTFDIDANGILNVTAK-------------------------D------------------------------- 466 (579)
T ss_pred CCCCceEEEeccCCCcceEeeee-------------------------c-------------------------------
Confidence 99999999999999999999884 1
Q ss_pred CCCCCCCCCCCCCCCCCCccccCCCcccceeEeeeEeeccCCCCCHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 003056 555 DAPGAENGVPESGDKPTQMETDKTPKKKVKKTNIPVSELVYGGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYV 634 (852)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~k~~~l~v~~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~i 634 (852)
+...+...+.|.... +|+.++|+.|.+.+..+.+.|+..++..+.+|.+++++
T Consensus 467 -------------------------~~~~k~~~i~i~~~~--~ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~ 519 (579)
T COG0443 467 -------------------------LGTGKEQSITIKASS--GLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLI 519 (579)
T ss_pred -------------------------ccCCceEEEEEecCC--CCCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHH
Confidence 111234456666555 49999999999999999999999999999999999999
Q ss_pred HHhHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHhccchHHHHHHh
Q 003056 635 YDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKE 700 (852)
Q Consensus 635 y~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~dg~~a~~~~~~~kl~~L~~~~~pi~~R~~e 700 (852)
|.++..|.+.. .+++++++.+...+.+++.||+.+ ..++..+.++|+....++..++..
T Consensus 520 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 520 YSLEKALKEIV--KVSEEEKEKIEEAITDLEEALEGE-----KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHhhhc--cCCHHHHHHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999997544 899999999999999999999972 889999999999999998887653
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=9.9e-55 Score=489.90 Aligned_cols=336 Identities=24% Similarity=0.340 Sum_probs=289.0
Q ss_pred EEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEc----------------------------------------
Q 003056 3 VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFG---------------------------------------- 42 (852)
Q Consensus 3 viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~---------------------------------------- 42 (852)
++|||||||||+||++.+|.++++.++.|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 5899999999999999999999999999999999999994
Q ss_pred -CCceeecHhhHhhhhcCCcch--HHHHHHhhCCCCCCHHHHHhhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHH
Q 003056 43 -DKQRFIGTAGAASSTMNPKNS--ISQIKRLIGRQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLG 119 (852)
Q Consensus 43 -~~~~~~G~~A~~~~~~~p~~~--~~~~k~llG~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a 119 (852)
++..+||..|......+|.++ +..+|++||...-. .+ ....++++++
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~------------------~~------------~~~~~e~l~a 131 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLK------------------PQ------------QVALFEDLVC 131 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCC------------------cc------------ceeCHHHHHH
Confidence 345679999999999999988 77999999965211 01 1234899999
Q ss_pred HHHHHHHHHHHHhcCCCcCcEEEEEcCCCC-----HHHHHH---HHHHHHHcCCcceeeechhHHHHHHhhhhcCCCCCC
Q 003056 120 MLLSNLKAIAESNLNAAVVDCCIGIPVYFT-----DLQRRA---VIDAATIAGLHPLRLFHETTATALAYGIYKTDLPEN 191 (852)
Q Consensus 120 ~~L~~l~~~a~~~~~~~~~~~VitVP~~f~-----~~qR~a---l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~ 191 (852)
++|++|++.++.++|.++.++|||||+||+ +.||++ |++||+.|||++++|++||+|||++|+....
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~----- 206 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT----- 206 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC-----
Confidence 999999999999999999999999999998 788776 7999999999999999999999999986432
Q ss_pred CCceEEEEEeCCceeEEEEEEeeCC-------eEEEEEEeCCCCcccHHHHHHHH-HHHHHHHHh----hhcccc-----
Q 003056 192 DQLNVAFVDIGHASLQVCIAGFKKG-------QLKILGHSFDRSVGGRDFDEVLF-QHFAAKFKE----EYKIDV----- 254 (852)
Q Consensus 192 ~~~~vlv~D~GggT~dvsiv~~~~~-------~~~vl~~~~d~~lGG~~~D~~l~-~~l~~~~~~----k~~~~~----- 254 (852)
.+..+|||||||||+|+||+++.++ ..+|+++.| .++||+|||..|+ +++...|.. ++++++
T Consensus 207 ~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~ 285 (450)
T PRK11678 207 EEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPF 285 (450)
T ss_pred CCCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhh
Confidence 4688999999999999999999754 368999987 5899999999998 678887742 111110
Q ss_pred ------------------------------cCCHHHH------------HHHHHHHHHhhhhcCCCCcccEEEecccCCc
Q 003056 255 ------------------------------SQNARAS------------LRLRVACEKLKKVLSANPEAPLNIECLMEEK 292 (852)
Q Consensus 255 ------------------------------~~~~~~~------------~rL~~~aek~K~~LS~~~~~~i~ie~l~~~~ 292 (852)
..+|+.+ .+|+.+||++|+.||.+.++.+.++.+. .
T Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~--~ 363 (450)
T PRK11678 286 WNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS--D 363 (450)
T ss_pred hhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--C
Confidence 1134333 3788999999999999999999998764 4
Q ss_pred ceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhh
Q 003056 293 DVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARG 372 (852)
Q Consensus 293 d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~G 372 (852)
++...|||++|+++|+++++++..+|+++|+.+++. ++.|+||||+||||.|++.|++.||.......++.++||.|
T Consensus 364 ~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~G 440 (450)
T PRK11678 364 GLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAG 440 (450)
T ss_pred CcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHH
Confidence 578899999999999999999999999999999976 57999999999999999999999986555678999999999
Q ss_pred HHHhhhh
Q 003056 373 CALQCAI 379 (852)
Q Consensus 373 Aa~~aa~ 379 (852)
+|++|..
T Consensus 441 la~~a~~ 447 (450)
T PRK11678 441 LARWAQV 447 (450)
T ss_pred HHHHHHh
Confidence 9999874
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=9.9e-38 Score=344.31 Aligned_cols=307 Identities=21% Similarity=0.264 Sum_probs=233.9
Q ss_pred EEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEcCC--ce-eecHhhHhhhhcCCcchHHHHHHhhCCCCCCHHH
Q 003056 4 VGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDK--QR-FIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (852)
Q Consensus 4 iGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~~~--~~-~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~v 80 (852)
+||||||+|++|+.. +...++. +||+|+|... .. .+|.+|..+..+.|.+...
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~--------------- 61 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVA--------------- 61 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEE---------------
Confidence 899999999999886 3223432 4999999853 23 6899996655544443210
Q ss_pred HHhhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHHH
Q 003056 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (852)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~Aa 160 (852)
+.+..+|. +...++...+|+++.+.+..........+|||||++|+..||+++.+|+
T Consensus 62 ----------~~pi~~G~-------------i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 62 ----------IRPLRDGV-------------IADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred ----------EccCCCCe-------------EecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 01111332 1222455666666654443222223347999999999999999999999
Q ss_pred HHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHH
Q 003056 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (852)
Q Consensus 161 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~ 240 (852)
+.||++++.+++||+|||++|+.... .+..++|||+||||||+++++... ++ ..++..+||++||..|++
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~~-----~~~~~lVvDiGggttdvsvv~~g~----~~-~~~~~~lGG~did~~i~~ 188 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDIS-----QPSGNMVVDIGGGTTDIAVLSLGG----IV-TSSSIKVAGDKFDEAIIR 188 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCccc-----CCCeEEEEEeCCCeEEEEEEEeCC----EE-EeCCcCCHHHHHHHHHHH
Confidence 99999999999999999999987432 356799999999999999998763 22 245789999999999999
Q ss_pred HHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCC----cccEEEe--cccCCcceEEEecHHHHHHHHHHHHHHH
Q 003056 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANP----EAPLNIE--CLMEEKDVRGFIKRDEFEQISAPILERV 314 (852)
Q Consensus 241 ~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~----~~~i~ie--~l~~~~d~~~~itr~efe~l~~~~~~~i 314 (852)
++..+|. +.+. ...||++|+.++... ...+.+. .+..+.++.+.|+|++|++++.++++++
T Consensus 189 ~l~~~~~----~~~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i 255 (336)
T PRK13928 189 YIRKKYK----LLIG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAI 255 (336)
T ss_pred HHHHHhc----hhcC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHH
Confidence 9987653 2221 257999999886431 1233332 2345667789999999999999999999
Q ss_pred HHHHHHHHHHcC--CCCCCcc-EEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhhh
Q 003056 315 KRPLEKALAETG--LSVEDVH-MVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAIL 380 (852)
Q Consensus 315 ~~~i~~~l~~a~--~~~~~I~-~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~l 380 (852)
...|.++|+.++ +....++ .|+|+||+|++|.|+++|++.|+.++....||++|||+|||+++..+
T Consensus 256 ~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 256 VQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 999999999986 4456677 79999999999999999999999988888999999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=2.4e-37 Score=340.17 Aligned_cols=305 Identities=20% Similarity=0.266 Sum_probs=241.6
Q ss_pred EEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEcCCc---eeecHhhHhhhhcCCcchHHHHHHhhCCCCCCHH
Q 003056 3 VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDKQ---RFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPE 79 (852)
Q Consensus 3 viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~~~~---~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~ 79 (852)
.+||||||+|++| +.++.. ++.|+ ||+|+|+.+. .++|.+|+.+..++|.++... +
T Consensus 6 ~~giDlGt~~~~i--~~~~~~-~~~~~------ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~---------- 64 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKG-IILNE------PSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R---------- 64 (335)
T ss_pred eEEEEcccccEEE--EECCCc-EEecC------CcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e----------
Confidence 5899999999985 444432 45564 9999998543 479999988887777665321 1
Q ss_pred HHHhhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcC--cEEEEEcCCCCHHHHHHHH
Q 003056 80 LQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVV--DCCIGIPVYFTDLQRRAVI 157 (852)
Q Consensus 80 v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~--~~VitVP~~f~~~qR~al~ 157 (852)
+..+|.+ .--++++++|++++..++..++..+. .+|||||++|+..||+++.
T Consensus 65 -------------pi~~G~I-------------~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~ 118 (335)
T PRK13929 65 -------------PMKDGVI-------------ADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAIS 118 (335)
T ss_pred -------------cCCCCcc-------------CCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHH
Confidence 1112321 11268899999999988877776554 7999999999999999999
Q ss_pred HHHHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHH
Q 003056 158 DAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEV 237 (852)
Q Consensus 158 ~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~ 237 (852)
+|++.||++++.|++||+|||++|++... .+..++|||+||||||++++.+.+ ++ ..++..+||++||..
T Consensus 119 ~a~~~ag~~~~~li~ep~Aaa~~~g~~~~-----~~~~~lvvDiG~gtt~v~vi~~~~----~~-~~~~~~~GG~~id~~ 188 (335)
T PRK13929 119 DAVKNCGAKNVHLIEEPVAAAIGADLPVD-----EPVANVVVDIGGGTTEVAIISFGG----VV-SCHSIRIGGDQLDED 188 (335)
T ss_pred HHHHHcCCCeeEeecCHHHHHHhcCCCcC-----CCceEEEEEeCCCeEEEEEEEeCC----EE-EecCcCCHHHHHHHH
Confidence 99999999999999999999999976432 367899999999999999998764 22 334678999999999
Q ss_pred HHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCC----cccEEEe--cccCCcceEEEecHHHHHHHHHHHH
Q 003056 238 LFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANP----EAPLNIE--CLMEEKDVRGFIKRDEFEQISAPIL 311 (852)
Q Consensus 238 l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~----~~~i~ie--~l~~~~d~~~~itr~efe~l~~~~~ 311 (852)
|+++|...+ ++... ...||++|+.|+... ...+.+. .+..+....+.++|++|+.+|.+++
T Consensus 189 l~~~l~~~~----~~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l 255 (335)
T PRK13929 189 IVSFVRKKY----NLLIG---------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESL 255 (335)
T ss_pred HHHHHHHHh----CcCcC---------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHH
Confidence 999998654 33322 168999999997632 1223332 2334556788999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC--CCCcc-EEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhh
Q 003056 312 ERVKRPLEKALAETGLS--VEDVH-MVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQC 377 (852)
Q Consensus 312 ~~i~~~i~~~l~~a~~~--~~~I~-~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~a 377 (852)
.++...|.++|+.++.. ...++ .|+|+||+|++|.+.++|++.||.++....||+++|++||+..-
T Consensus 256 ~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 256 LHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 99999999999998643 35677 69999999999999999999999988888999999999999763
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1.2e-34 Score=320.02 Aligned_cols=305 Identities=23% Similarity=0.321 Sum_probs=227.7
Q ss_pred EEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEcCC-c--eeecHhhHhhhhcCCcchHHHHHHhhCCCCCCHH
Q 003056 3 VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDK-Q--RFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPE 79 (852)
Q Consensus 3 viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~~~-~--~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~ 79 (852)
.|||||||++++++.. +.+. ++ .+||+|+|... + .++|++|..+..+.|.++...
T Consensus 7 ~igIDlGt~~~~i~~~-~~~~-~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~------------- 64 (334)
T PRK13927 7 DLGIDLGTANTLVYVK-GKGI-VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI------------- 64 (334)
T ss_pred eeEEEcCcceEEEEEC-CCcE-EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE-------------
Confidence 4899999999998553 2232 33 26999999754 3 379999977766555442100
Q ss_pred HHHhhccCCceEeeCCCCceEEEEEEcCceeee-cHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHH
Q 003056 80 LQRDLKSLPFAVTEGPDGYPLIHARYLGETRVF-TPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVID 158 (852)
Q Consensus 80 v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~ 158 (852)
.| ..+|.+ ..+ ..++++..+|.++... .. ....+|||||++|+..||++++.
T Consensus 65 -------~p-----i~~G~i----------~d~~~~~~ll~~~~~~~~~~----~~-~~~~~vi~vP~~~~~~~r~~~~~ 117 (334)
T PRK13927 65 -------RP-----MKDGVI----------ADFDVTEKMLKYFIKKVHKN----FR-PSPRVVICVPSGITEVERRAVRE 117 (334)
T ss_pred -------ec-----CCCCee----------cCHHHHHHHHHHHHHHHhhc----cC-CCCcEEEEeCCCCCHHHHHHHHH
Confidence 01 123321 112 1244555555443322 21 12379999999999999999999
Q ss_pred HHHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHH
Q 003056 159 AATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVL 238 (852)
Q Consensus 159 Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l 238 (852)
|++.||++.+.+++||+|||++|+.... .+..++|||+||||||++++++.+- . ..++..+||++||+.|
T Consensus 118 a~~~ag~~~~~li~ep~aaa~~~g~~~~-----~~~~~lvvDiGggttdvs~v~~~~~----~-~~~~~~lGG~~id~~l 187 (334)
T PRK13927 118 SALGAGAREVYLIEEPMAAAIGAGLPVT-----EPTGSMVVDIGGGTTEVAVISLGGI----V-YSKSVRVGGDKFDEAI 187 (334)
T ss_pred HHHHcCCCeeccCCChHHHHHHcCCccc-----CCCeEEEEEeCCCeEEEEEEecCCe----E-eeCCcCChHHHHHHHH
Confidence 9999999999999999999999986432 3567899999999999999987642 1 2346789999999999
Q ss_pred HHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCc----ccEEE--ecccCCcceEEEecHHHHHHHHHHHHH
Q 003056 239 FQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPE----APLNI--ECLMEEKDVRGFIKRDEFEQISAPILE 312 (852)
Q Consensus 239 ~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~----~~i~i--e~l~~~~d~~~~itr~efe~l~~~~~~ 312 (852)
++++.++| ++... ...|+++|+.++.... ..+.+ +.+..+.++.+.|+|++|++++.+.+.
T Consensus 188 ~~~l~~~~----~~~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~ 254 (334)
T PRK13927 188 INYVRRNY----NLLIG---------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLS 254 (334)
T ss_pred HHHHHHHh----CcCcC---------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHH
Confidence 99998655 22221 1578999999875432 22333 234456667889999999999999999
Q ss_pred HHHHHHHHHHHHcCCCC-CC-cc-EEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhh
Q 003056 313 RVKRPLEKALAETGLSV-ED-VH-MVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAI 379 (852)
Q Consensus 313 ~i~~~i~~~l~~a~~~~-~~-I~-~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ 379 (852)
++...|.++|+.++... .+ ++ .|+|+||+|++|.++++|++.|+.++....||+++||+||++++..
T Consensus 255 ~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 255 AIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 99999999999986432 23 34 5999999999999999999999988888899999999999999765
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=4.6e-34 Score=314.89 Aligned_cols=305 Identities=20% Similarity=0.288 Sum_probs=224.6
Q ss_pred EEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEcCC-----c--eeecHhhHhhhhcCCcchHHHHHHhhCCCCC
Q 003056 4 VGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDK-----Q--RFIGTAGAASSTMNPKNSISQIKRLIGRQFS 76 (852)
Q Consensus 4 iGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~~~-----~--~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~ 76 (852)
|||||||+||+|++... +. ++ .+||+|+|..+ + .++|++|.....+.|.+.- ++
T Consensus 5 ~giDlGt~~s~i~~~~~-~~-~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~-------- 65 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGR-GI-VL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AI-------- 65 (333)
T ss_pred eEEecCcceEEEEECCC-CE-EE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EE--------
Confidence 89999999999988533 32 33 26999999743 3 5699999665544443321 01
Q ss_pred CHHHHHhhccCCceEeeCCCCceEEEEEEcCceeee-cHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHH
Q 003056 77 DPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVF-TPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRA 155 (852)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~a 155 (852)
.+..+|.+ ..+ ..++++..+|..+.... +.....+|||||++|+..||++
T Consensus 66 ---------------~pi~~G~i----------~d~~~~~~~~~~~l~~~~~~~----~~~~~~~vitvP~~~~~~~r~~ 116 (333)
T TIGR00904 66 ---------------RPMKDGVI----------ADFEVTEKMIKYFIKQVHSRK----SFFKPRIVICVPSGITPVERRA 116 (333)
T ss_pred ---------------ecCCCCEE----------EcHHHHHHHHHHHHHHHhccc----ccCCCcEEEEeCCCCCHHHHHH
Confidence 11123321 112 12445555555443321 1112379999999999999999
Q ss_pred HHHHHHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHH
Q 003056 156 VIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFD 235 (852)
Q Consensus 156 l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D 235 (852)
+.+|++.+|++++.+++||+|||++|+.... .+..++|||+||||||++++++.+- . ..++..+||++||
T Consensus 117 ~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~-----~~~~~lVvDiG~gttdvs~v~~~~~----~-~~~~~~lGG~did 186 (333)
T TIGR00904 117 VKESALSAGAREVYLIEEPMAAAIGAGLPVE-----EPTGSMVVDIGGGTTEVAVISLGGI----V-VSRSIRVGGDEFD 186 (333)
T ss_pred HHHHHHHcCCCeEEEecCHHHHHHhcCCccc-----CCceEEEEEcCCCeEEEEEEEeCCE----E-ecCCccchHHHHH
Confidence 9999999999999999999999999975321 3567999999999999999988641 1 2346789999999
Q ss_pred HHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCc-----ccEEEec--ccCCcceEEEecHHHHHHHHH
Q 003056 236 EVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPE-----APLNIEC--LMEEKDVRGFIKRDEFEQISA 308 (852)
Q Consensus 236 ~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~-----~~i~ie~--l~~~~d~~~~itr~efe~l~~ 308 (852)
+.|++++.+++ +.... +..||++|+.++.... ..+.+.. ...+......|+|++|.+++.
T Consensus 187 ~~l~~~l~~~~----~~~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~ 253 (333)
T TIGR00904 187 EAIINYIRRTY----NLLIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQ 253 (333)
T ss_pred HHHHHHHHHHh----cccCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHH
Confidence 99999998654 22221 2679999999865322 1222221 112334567899999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCC-CCc-c-EEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhh
Q 003056 309 PILERVKRPLEKALAETGLSV-EDV-H-MVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAI 379 (852)
Q Consensus 309 ~~~~~i~~~i~~~l~~a~~~~-~~I-~-~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ 379 (852)
+.+.++...|.++|+.++... .++ + .|+|+||+|++|.++++|++.||.++....||+++||.||+++...
T Consensus 254 ~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 254 EPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 999999999999999986432 244 3 7999999999999999999999999989999999999999998653
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=4.6e-33 Score=307.92 Aligned_cols=307 Identities=23% Similarity=0.293 Sum_probs=229.2
Q ss_pred EEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEcC-C--ceeecHhhHhhhhcCCcchHHHHHHhhCCCCCCHHH
Q 003056 4 VGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGD-K--QRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPEL 80 (852)
Q Consensus 4 iGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~~-~--~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~v 80 (852)
+||||||++++++++.. ++ ++ + +||+|+|.. . ..++|.+|.....+.|.+.- +
T Consensus 11 vgiDlGt~~t~i~~~~~-~~-~~-~------~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~------------- 66 (335)
T PRK13930 11 IGIDLGTANTLVYVKGK-GI-VL-N------EPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--A------------- 66 (335)
T ss_pred eEEEcCCCcEEEEECCC-CE-EE-e------cCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--E-------------
Confidence 89999999999988633 32 32 2 599999975 2 25799999766554443310 0
Q ss_pred HHhhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHHH
Q 003056 81 QRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAA 160 (852)
Q Consensus 81 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~Aa 160 (852)
..| ..+|.+ .+ -+.+..+|+++.+.+..........+|||+|++|+..+|+++.+|+
T Consensus 67 -----~~p-----i~~G~i------------~d-~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~ 123 (335)
T PRK13930 67 -----IRP-----LKDGVI------------AD-FEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAA 123 (335)
T ss_pred -----eec-----CCCCeE------------cC-HHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 011 123322 11 1335556666654443333344678999999999999999999999
Q ss_pred HHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHH
Q 003056 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (852)
Q Consensus 161 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~ 240 (852)
+.+|++++.+++||+|||++|+.... ....++|||+||||||++++.... ++ ..+...+||++||+.|++
T Consensus 124 e~~g~~~~~lv~ep~AAa~a~g~~~~-----~~~~~lVvDiG~gttdvs~v~~g~----~~-~~~~~~lGG~~id~~l~~ 193 (335)
T PRK13930 124 EHAGAREVYLIEEPMAAAIGAGLPVT-----EPVGNMVVDIGGGTTEVAVISLGG----IV-YSESIRVAGDEMDEAIVQ 193 (335)
T ss_pred HHcCCCeEEecccHHHHHHhcCCCcC-----CCCceEEEEeCCCeEEEEEEEeCC----EE-eecCcCchhHHHHHHHHH
Confidence 99999999999999999999876432 245689999999999999987653 22 245789999999999999
Q ss_pred HHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcc----cEEEe--cccCCcceEEEecHHHHHHHHHHHHHHH
Q 003056 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEA----PLNIE--CLMEEKDVRGFIKRDEFEQISAPILERV 314 (852)
Q Consensus 241 ~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~----~i~ie--~l~~~~d~~~~itr~efe~l~~~~~~~i 314 (852)
++.+++ +.+.. ...||++|+.++..... .+.+. .+..+.+..+.|+|++|++++.+.+.++
T Consensus 194 ~l~~~~----~~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i 260 (335)
T PRK13930 194 YVRRKY----NLLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQI 260 (335)
T ss_pred HHHHHh----CCCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHH
Confidence 998754 33322 15789999999754321 23332 2233455678899999999999999999
Q ss_pred HHHHHHHHHHcCCC--CCCcc-EEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhhh
Q 003056 315 KRPLEKALAETGLS--VEDVH-MVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAIL 380 (852)
Q Consensus 315 ~~~i~~~l~~a~~~--~~~I~-~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~l 380 (852)
...|.++|+.+... ...++ .|+|+||+|++|.++++|++.|+.++....+|+++||+||++.+...
T Consensus 261 ~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 261 VEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred HHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhCh
Confidence 99999999987532 22345 49999999999999999999999888888899999999999987653
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.97 E-value=8.4e-31 Score=281.32 Aligned_cols=306 Identities=22% Similarity=0.331 Sum_probs=215.5
Q ss_pred EEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEcCC-c--eeecHhhHhhhhcCCcchHHHHHHhhCCCCCCHH
Q 003056 3 VVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDK-Q--RFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPE 79 (852)
Q Consensus 3 viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~~~-~--~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~ 79 (852)
-|||||||+++.|+. .+.+ ++.++ ||+|+|+.+ + ..+|.+|..+..+.|.+. .
T Consensus 3 ~igIDLGT~~t~i~~-~~~G--iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i---------------~ 58 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYV-KGKG--IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNI---------------E 58 (326)
T ss_dssp EEEEEE-SSEEEEEE-TTTE--EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTE---------------E
T ss_pred ceEEecCcccEEEEE-CCCC--EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCcc---------------E
Confidence 589999999999854 3333 55565 999999864 2 348999955444443321 0
Q ss_pred HHHhhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHH
Q 003056 80 LQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDA 159 (852)
Q Consensus 80 v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~A 159 (852)
+ +.+..+|.+ .=-++...+|+++.+.+.......-..++|+||+.-++.+|+++.+|
T Consensus 59 ~----------~~Pl~~GvI-------------~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a 115 (326)
T PF06723_consen 59 V----------VRPLKDGVI-------------ADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDA 115 (326)
T ss_dssp E----------E-SEETTEE-------------SSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHH
T ss_pred E----------EccccCCcc-------------cCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 0 112224432 11245566666666655443222345799999999999999999999
Q ss_pred HHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHH
Q 003056 160 ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLF 239 (852)
Q Consensus 160 a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~ 239 (852)
+..+|.+-+.||.||.|||+..++.- .++...||+|+||||||++++...+ ++.+. ...+||++||+.|.
T Consensus 116 ~~~aGa~~V~li~ep~AaAiGaGl~i-----~~~~g~miVDIG~GtTdiavislgg----iv~s~-si~~gG~~~DeaI~ 185 (326)
T PF06723_consen 116 ARQAGARKVYLIEEPIAAAIGAGLDI-----FEPRGSMIVDIGGGTTDIAVISLGG----IVASR-SIRIGGDDIDEAII 185 (326)
T ss_dssp HHHTT-SEEEEEEHHHHHHHHTT--T-----TSSS-EEEEEE-SS-EEEEEEETTE----EEEEE-EES-SHHHHHHHHH
T ss_pred HHHcCCCEEEEecchHHHHhcCCCCC-----CCCCceEEEEECCCeEEEEEEECCC----EEEEE-EEEecCcchhHHHH
Confidence 99999999999999999999887642 2578899999999999999997653 33333 36899999999999
Q ss_pred HHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCc----ccEEEe--cccCCcceEEEecHHHHHHHHHHHHHH
Q 003056 240 QHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPE----APLNIE--CLMEEKDVRGFIKRDEFEQISAPILER 313 (852)
Q Consensus 240 ~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~----~~i~ie--~l~~~~d~~~~itr~efe~l~~~~~~~ 313 (852)
+|+.+++ ++.+.. ..||++|+.++.-.. ..+.+. .+..+...++.|+-+++.+.|.+.+.+
T Consensus 186 ~~ir~~y----~l~Ig~---------~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~ 252 (326)
T PF06723_consen 186 RYIREKY----NLLIGE---------RTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQ 252 (326)
T ss_dssp HHHHHHH----SEE--H---------HHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHhh----CcccCH---------HHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHH
Confidence 9998765 455555 889999999865421 234443 456777889999999999999999999
Q ss_pred HHHHHHHHHHHcCCC-CCCc--cEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhh
Q 003056 314 VKRPLEKALAETGLS-VEDV--HMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCA 378 (852)
Q Consensus 314 i~~~i~~~l~~a~~~-~~~I--~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa 378 (852)
|...|+++|+...-. ..|| +.|+|+||+++++.+.++|++.+|.++...-||..||+.||.....
T Consensus 253 I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 253 IVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHh
Confidence 999999999985211 1133 5799999999999999999999999999999999999999987654
No 27
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.97 E-value=2.3e-28 Score=251.14 Aligned_cols=310 Identities=25% Similarity=0.348 Sum_probs=240.9
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEcC--Cc---eeecHhhHhhhhcCCcchHHHHHHhhCCCCC
Q 003056 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGD--KQ---RFIGTAGAASSTMNPKNSISQIKRLIGRQFS 76 (852)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~~--~~---~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~ 76 (852)
..|||||||.|+.|++- +.+ |++|+ ||+|++.. +. ..+|.+| |+++|+...
T Consensus 7 ~diGIDLGTanTlV~~k-~kg--IVl~e------PSVVAi~~~~~~~~v~aVG~eA---------------K~MlGrTP~ 62 (342)
T COG1077 7 NDIGIDLGTANTLVYVK-GKG--IVLNE------PSVVAIESEGKTKVVLAVGEEA---------------KQMLGRTPG 62 (342)
T ss_pred ccceeeecccceEEEEc-Cce--EEecC------ceEEEEeecCCCceEEEehHHH---------------HHHhccCCC
Confidence 36899999999999764 333 78887 99999986 22 2489999 677787655
Q ss_pred CHHHHHhhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcC-CCcCcEEEEEcCCCCHHHHHH
Q 003056 77 DPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLN-AAVVDCCIGIPVYFTDLQRRA 155 (852)
Q Consensus 77 ~~~v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~-~~~~~~VitVP~~f~~~qR~a 155 (852)
+.. .+.+..+|.+ .--++...+|+|+.+.+....+ .....++|.||..-++-+|+|
T Consensus 63 ni~----------aiRPmkdGVI-------------Ad~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrA 119 (342)
T COG1077 63 NIV----------AIRPMKDGVI-------------ADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRA 119 (342)
T ss_pred Cce----------EEeecCCcEe-------------ecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHH
Confidence 431 2445555643 1123555566666665543222 344469999999999999999
Q ss_pred HHHHHHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHH
Q 003056 156 VIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFD 235 (852)
Q Consensus 156 l~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D 235 (852)
+++|++.||.+.+.++.||.|||+..++ |...+..-+|||+||||||++++++.+ ++... ...+||+.||
T Consensus 120 i~ea~~~aGa~~V~lieEp~aAAIGagl-----pi~ep~G~mvvDIGgGTTevaVISlgg----iv~~~-Sirv~GD~~D 189 (342)
T COG1077 120 IKEAAESAGAREVYLIEEPMAAAIGAGL-----PIMEPTGSMVVDIGGGTTEVAVISLGG----IVSSS-SVRVGGDKMD 189 (342)
T ss_pred HHHHHHhccCceEEEeccHHHHHhcCCC-----cccCCCCCEEEEeCCCceeEEEEEecC----EEEEe-eEEEecchhh
Confidence 9999999999999999999999998764 333567789999999999999998886 33333 4679999999
Q ss_pred HHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCC--------cccEEEecccCCcceEEEecHHHHHHHH
Q 003056 236 EVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANP--------EAPLNIECLMEEKDVRGFIKRDEFEQIS 307 (852)
Q Consensus 236 ~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~--------~~~i~ie~l~~~~d~~~~itr~efe~l~ 307 (852)
+.|.+|+.++ |++.+.. +.||++|+...... +..+.-..+..+..-.+.++-+++.+.+
T Consensus 190 e~Ii~yvr~~----~nl~IGe---------~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal 256 (342)
T COG1077 190 EAIIVYVRKK----YNLLIGE---------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEAL 256 (342)
T ss_pred HHHHHHHHHH----hCeeecH---------HHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHH
Confidence 9999999876 4565655 66888888774321 2234445566777778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcC--CCCCCccE-EEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhhhc
Q 003056 308 APILERVKRPLEKALAETG--LSVEDVHM-VEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILS 381 (852)
Q Consensus 308 ~~~~~~i~~~i~~~l~~a~--~~~~~I~~-ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ls 381 (852)
++.+++|.+.++..|+... +..+-++. ++|+||++.+..+.+.|++..+.++....+|..|||.|+......+.
T Consensus 257 ~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 257 EEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhhH
Confidence 9999999999999999863 33333454 99999999999999999999999999999999999999998776654
No 28
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.96 E-value=3.8e-28 Score=253.33 Aligned_cols=200 Identities=19% Similarity=0.277 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHHHHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCc
Q 003056 115 TQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQL 194 (852)
Q Consensus 115 eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~ 194 (852)
-+..+++|+++++.++.+++.++.++|||||++|++.||+++.+|++.||++++.+++||.|+|++|+..
T Consensus 39 ~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~---------- 108 (239)
T TIGR02529 39 FLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK---------- 108 (239)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC----------
Confidence 3578999999999999889989999999999999999999999999999999999999999999988531
Q ss_pred eEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhh
Q 003056 195 NVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKV 274 (852)
Q Consensus 195 ~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~ 274 (852)
..+|+|+||||||+++++. |. ++.+ .+..+||++||+.|++++ +++. .+||++|+.
T Consensus 109 ~~~vvDiGggtt~i~i~~~--G~--i~~~-~~~~~GG~~it~~Ia~~~--------~i~~-----------~~AE~~K~~ 164 (239)
T TIGR02529 109 NGAVVDVGGGTTGISILKK--GK--VIYS-ADEPTGGTHMSLVLAGAY--------GISF-----------EEAEEYKRG 164 (239)
T ss_pred CcEEEEeCCCcEEEEEEEC--Ce--EEEE-EeeecchHHHHHHHHHHh--------CCCH-----------HHHHHHHHh
Confidence 2599999999999999754 33 3333 367899999999887553 3332 789999986
Q ss_pred cCCCCcccEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhh
Q 003056 275 LSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEF 354 (852)
Q Consensus 275 LS~~~~~~i~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~ 354 (852)
++. .+++..+++++++++...|++.|+.. .++.|+|+||++++|.+++.|++.
T Consensus 165 ~~~----------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~ 217 (239)
T TIGR02529 165 HKD----------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQ 217 (239)
T ss_pred cCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHH
Confidence 541 45677899999999999999999864 357899999999999999999999
Q ss_pred cCCCCcccCCchhHHHhhHHH
Q 003056 355 FGKEPRRTMNASECVARGCAL 375 (852)
Q Consensus 355 fg~~v~~~~n~deava~GAa~ 375 (852)
||.++..+.||++++|.|||+
T Consensus 218 lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 218 LGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred hCCCcccCCCCCeehhheeec
Confidence 999998999999999999986
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.95 E-value=6.9e-26 Score=240.56 Aligned_cols=202 Identities=24% Similarity=0.337 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHHHHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCc
Q 003056 115 TQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQL 194 (852)
Q Consensus 115 eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~ 194 (852)
-+.....|+++++.++.+++..+..++++||++|+..+|+++.+|++.||+++..+++||.|++.+|.+.
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~---------- 135 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID---------- 135 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC----------
Confidence 4556778889999999988988999999999999999999999999999999999999999999877431
Q ss_pred eEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhh
Q 003056 195 NVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKV 274 (852)
Q Consensus 195 ~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~ 274 (852)
..+++|||||||+++++. ++.+ +.+ ++..+||++||+.|++++. ++ +.+||++|+.
T Consensus 136 ~~~vvDIGggtt~i~v~~--~g~~--~~~-~~~~~GG~~it~~Ia~~l~--------i~-----------~~eAE~lK~~ 191 (267)
T PRK15080 136 NGAVVDIGGGTTGISILK--DGKV--VYS-ADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEQYKRD 191 (267)
T ss_pred CcEEEEeCCCcEEEEEEE--CCeE--EEE-ecccCchHHHHHHHHHHhC--------CC-----------HHHHHHHHhc
Confidence 258999999999999964 4433 333 4789999999999997742 22 2778999876
Q ss_pred cCCCCcccEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhh
Q 003056 275 LSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEF 354 (852)
Q Consensus 275 LS~~~~~~i~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~ 354 (852)
++ +++++.++++++++++...|++.|+.. .++.|+|+||+|++|.+++.+++.
T Consensus 192 ~~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~ 244 (267)
T PRK15080 192 PK----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQ 244 (267)
T ss_pred cC----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHH
Confidence 53 357889999999999999999999863 578999999999999999999999
Q ss_pred cCCCCcccCCchhHHHhhHHHhh
Q 003056 355 FGKEPRRTMNASECVARGCALQC 377 (852)
Q Consensus 355 fg~~v~~~~n~deava~GAa~~a 377 (852)
||.++....||+.++|.|||++|
T Consensus 245 lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 245 TGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred hCCCcccCCCchHHHHHHHHhhC
Confidence 99999889999999999999875
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.90 E-value=6.2e-22 Score=221.65 Aligned_cols=194 Identities=17% Similarity=0.274 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcc
Q 003056 151 LQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVG 230 (852)
Q Consensus 151 ~qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lG 230 (852)
...+.+.+|++.|||+++.++.||.|+|++|.... .....++++|+||||||++++.. +.+.. .....+|
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~-----~~~~~~~vvDiG~gtt~i~i~~~--g~~~~---~~~i~~G 227 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTED-----EKELGVCLIDIGGGTTDIAVYTG--GSIRY---TKVIPIG 227 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcc-----hhcCCEEEEEeCCCcEEEEEEEC--CEEEE---Eeeecch
Confidence 34577888999999999999999999999884321 13567999999999999999853 33322 2356899
Q ss_pred cHHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCC------CcccEEEecccCCcceEEEecHHHHH
Q 003056 231 GRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSAN------PEAPLNIECLMEEKDVRGFIKRDEFE 304 (852)
Q Consensus 231 G~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~------~~~~i~ie~l~~~~d~~~~itr~efe 304 (852)
|++||+.|++.+. + .+.+||++|+.++.. ....+.+..+. .+....|+|++|+
T Consensus 228 G~~it~~i~~~l~--------~-----------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~ 286 (371)
T TIGR01174 228 GNHITKDIAKALR--------T-----------PLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELA 286 (371)
T ss_pred HHHHHHHHHHHhC--------C-----------CHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHH
Confidence 9999999876531 1 237899999999753 23456666543 4567899999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHcCCCCCCccE-EEEeCCCCChHHHHHHHHhhcCCCCcc------------cCCchhHHH
Q 003056 305 QISAPILERVKRPLE-KALAETGLSVEDVHM-VEVVGSSSRVPAIIKILTEFFGKEPRR------------TMNASECVA 370 (852)
Q Consensus 305 ~l~~~~~~~i~~~i~-~~l~~a~~~~~~I~~-ViLvGG~sriP~v~~~l~~~fg~~v~~------------~~n~deava 370 (852)
+++++.++++...|. +.|+.++.. .+++. |+|+||+|++|.|++++++.||.++.. .-+|..++|
T Consensus 287 ~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~~a 365 (371)
T TIGR01174 287 EIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYSTA 365 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHHHH
Confidence 999999999999997 999998876 67776 999999999999999999999855321 126778888
Q ss_pred hhHHHh
Q 003056 371 RGCALQ 376 (852)
Q Consensus 371 ~GAa~~ 376 (852)
.|.++|
T Consensus 366 ~Gl~~~ 371 (371)
T TIGR01174 366 VGLLLY 371 (371)
T ss_pred HHHHhC
Confidence 888764
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.87 E-value=2.3e-20 Score=211.38 Aligned_cols=195 Identities=14% Similarity=0.199 Sum_probs=147.4
Q ss_pred HHHHHHHHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHH
Q 003056 154 RAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRD 233 (852)
Q Consensus 154 ~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~ 233 (852)
+.+..|++.|||++..++.||.|+|+++.... .....++++||||||||++++. +|.+. +.....+||++
T Consensus 169 ~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~-----e~~~gv~vvDiGggtTdisv~~--~G~l~---~~~~i~~GG~~ 238 (420)
T PRK09472 169 KNIVKAVERCGLKVDQLIFAGLASSYAVLTED-----ERELGVCVVDIGGGTMDIAVYT--GGALR---HTKVIPYAGNV 238 (420)
T ss_pred HHHHHHHHHcCCeEeeEEehhhHHHHHhcChh-----hhhcCeEEEEeCCCceEEEEEE--CCEEE---EEeeeechHHH
Confidence 34467999999999999999999999885322 1357799999999999999985 44332 22357899999
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCC------CcccEEEecccCCcceEEEecHHHHHHHH
Q 003056 234 FDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSAN------PEAPLNIECLMEEKDVRGFIKRDEFEQIS 307 (852)
Q Consensus 234 ~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~------~~~~i~ie~l~~~~d~~~~itr~efe~l~ 307 (852)
|++.|+..|. +. +..||++|+.+... ....+.++.+... ....++|.+|.+++
T Consensus 239 it~dIa~~l~--------i~-----------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~--~~~~i~~~~l~~ii 297 (420)
T PRK09472 239 VTSDIAYAFG--------TP-----------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR--PPRSLQRQTLAEVI 297 (420)
T ss_pred HHHHHHHHhC--------cC-----------HHHHHHHHHhcceeccccCCCCceeEecCCCCC--CCeEEcHHHHHHHH
Confidence 9999986542 21 27899999765321 2345666654322 22478999999999
Q ss_pred HHHHHHHHHHHHH-------HHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcc------------cCCchhH
Q 003056 308 APILERVKRPLEK-------ALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRR------------TMNASEC 368 (852)
Q Consensus 308 ~~~~~~i~~~i~~-------~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~------------~~n~dea 368 (852)
.+.++++...|.+ .|..+++....++.|+|+||++++|.|++++++.|+.++.. ..+|..+
T Consensus 298 ~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P~~a 377 (420)
T PRK09472 298 EPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYS 377 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCcHHH
Confidence 9976666666654 55667877778999999999999999999999999855422 2379999
Q ss_pred HHhhHHHhhhh
Q 003056 369 VARGCALQCAI 379 (852)
Q Consensus 369 va~GAa~~aa~ 379 (852)
+|.|.++++..
T Consensus 378 ta~Gl~~~~~~ 388 (420)
T PRK09472 378 TAVGLLHYGKE 388 (420)
T ss_pred HHHHHHHHhhh
Confidence 99999999763
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.77 E-value=8.1e-17 Score=177.54 Aligned_cols=320 Identities=19% Similarity=0.237 Sum_probs=211.3
Q ss_pred EEEEEcCccceEEEEE--ECC-ceEEEeCCCCCccceEEEEEcCCceeecHhhHhhhhcCCcchHHHHHHhhCCCCCCHH
Q 003056 3 VVGFDLGNESCIVAVA--RQR-GIDVVLNDESKRETPSIVCFGDKQRFIGTAGAASSTMNPKNSISQIKRLIGRQFSDPE 79 (852)
Q Consensus 3 viGID~GTt~s~va~~--~~~-~~~iv~n~~~~r~~Ps~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~~~~ 79 (852)
++|+|+||+.+++.+. .++ .+.++-- ...||-- . .++.+.--++..++. +.++....++.|...++.
T Consensus 8 iv~LDIGTskV~~lVge~~~~g~i~iig~----g~~~SrG-i-k~G~I~di~~~~~sI---~~av~~AE~mag~~i~~v- 77 (418)
T COG0849 8 IVGLDIGTSKVKALVGELRPDGRLNIIGV----GSHPSRG-I-KKGVIVDLDAAAQSI---KKAVEAAERMAGCEIKSV- 77 (418)
T ss_pred EEEEEccCcEEEEEEEEEcCCCeEEEEee----ecccCcc-c-ccceEEcHHHHHHHH---HHHHHHHHHhcCCCcceE-
Confidence 8999999999997665 344 3555421 1111100 0 123444444444433 245666677777665432
Q ss_pred HHHhhccCCceEeeCCCCceE-----EEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCH----
Q 003056 80 LQRDLKSLPFAVTEGPDGYPL-----IHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTD---- 150 (852)
Q Consensus 80 v~~~~~~~~~~~~~~~~g~~~-----~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~---- 150 (852)
.+....+.+. ..+...++ +.++.+++- ++.+.|......+-..|+-..|-.|.-
T Consensus 78 -----------~vs~sG~~i~s~~~~g~v~i~~~-~eIt~~DI~-----rvl~~A~~~~~~~~~~ilh~~p~~y~vD~~~ 140 (418)
T COG0849 78 -----------IVSLSGNHIKSQNVNGEVSISEE-KEITQEDIE-----RVLEAAKAVAIPPEREILHVIPQEYIVDGQE 140 (418)
T ss_pred -----------EEEeccceeEEEeeEEEEEcCCC-CccCHHHHH-----HHHHHHHhhccCCCceEEEEeeeEEEECCcc
Confidence 1111122211 11222222 556666665 333333332222223343344443331
Q ss_pred ------------------------HHHHHHHHHHHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCcee
Q 003056 151 ------------------------LQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASL 206 (852)
Q Consensus 151 ------------------------~qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~ 206 (852)
.--+.|.+|++.+||++..++-+|.|+|.+..... ...-+++++|||||||
T Consensus 141 ~I~dP~gm~G~rL~v~vhvit~~~~~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~d-----EkelGv~lIDiG~GTT 215 (418)
T COG0849 141 GIKDPLGMSGVRLEVEVHVITGPKNILENLEKCVERAGLKVDNIVLEPLASALAVLTED-----EKELGVALIDIGGGTT 215 (418)
T ss_pred ccCCccccccceEEEEEEEEEcchHHHHHHHHHHHHhCCCeeeEEEehhhhhhhccCcc-----cHhcCeEEEEeCCCcE
Confidence 12366889999999999999999999997653321 1367899999999999
Q ss_pred EEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCC------Cc
Q 003056 207 QVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSAN------PE 280 (852)
Q Consensus 207 dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~------~~ 280 (852)
|+++++-. .+ . +.+...+||++++..|+.-|.-.| ..||++|+.+... ..
T Consensus 216 dIai~~~G--~l--~-~~~~ipvgG~~vT~DIa~~l~t~~-------------------~~AE~iK~~~g~a~~~~~~~~ 271 (418)
T COG0849 216 DIAIYKNG--AL--R-YTGVIPVGGDHVTKDIAKGLKTPF-------------------EEAERIKIKYGSALISLADDE 271 (418)
T ss_pred EEEEEECC--EE--E-EEeeEeeCccHHHHHHHHHhCCCH-------------------HHHHHHHHHcCccccCcCCCc
Confidence 99996544 33 2 333678999999999997654222 7899999888433 23
Q ss_pred ccEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCc
Q 003056 281 APLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPR 360 (852)
Q Consensus 281 ~~i~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~ 360 (852)
..+.++...++. ...++|..+.++++..+.++..+++..|+++++...-...|+|+||++.+|++.+..++.|+.++.
T Consensus 272 ~~i~v~~vg~~~--~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vR 349 (418)
T COG0849 272 ETIEVPSVGSDI--PRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVR 349 (418)
T ss_pred ceEecccCCCcc--cchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceE
Confidence 457777664443 678999999999999999999999999999999866778999999999999999999999975431
Q ss_pred --c----------cCCchhHHHhhHHHhhhhh
Q 003056 361 --R----------TMNASECVARGCALQCAIL 380 (852)
Q Consensus 361 --~----------~~n~deava~GAa~~aa~l 380 (852)
. ..+|..+.+.|..++++..
T Consensus 350 ig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 350 LGVPLNIVGLTDIARNPAFSTAVGLLLYGALM 381 (418)
T ss_pred eCCCccccCchhhccCchhhhhHHHHHHHhhc
Confidence 1 2367889999999888753
No 33
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.62 E-value=8.1e-16 Score=146.92 Aligned_cols=197 Identities=20% Similarity=0.272 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHHHHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEE
Q 003056 120 MLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFV 199 (852)
Q Consensus 120 ~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~ 199 (852)
.+.+++++.+++++|..+++..-++|+.--+...+...+..+.||+.++..++||+|||.-.++ ..-.|+
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l----------~dg~VV 145 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQL----------DDGGVV 145 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhcc----------CCCcEE
Confidence 4678889999999999999999999999988888888899999999999999999999854432 234689
Q ss_pred EeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCC
Q 003056 200 DIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANP 279 (852)
Q Consensus 200 D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~ 279 (852)
|+|||||-+||++-.+ |+.++ |...||.++...|+-+ |++++ ++||..|+.--...
T Consensus 146 DiGGGTTGIsi~kkGk----Viy~A-DEpTGGtHmtLvlAG~--------ygi~~-----------EeAE~~Kr~~k~~~ 201 (277)
T COG4820 146 DIGGGTTGISIVKKGK----VIYSA-DEPTGGTHMTLVLAGN--------YGISL-----------EEAEQYKRGHKKGE 201 (277)
T ss_pred EeCCCcceeEEEEcCc----EEEec-cCCCCceeEEEEEecc--------cCcCH-----------hHHHHhhhccccch
Confidence 9999999999987653 66665 8899999998877643 45554 66777764321111
Q ss_pred cccEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCC
Q 003056 280 EAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEP 359 (852)
Q Consensus 280 ~~~i~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v 359 (852)
+.=-.+.|+++++..++.+.|+..+ |..+.|+||+|.-|.+.+..++.|+.++
T Consensus 202 ----------------------Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l~l~v 254 (277)
T COG4820 202 ----------------------EIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQLALQV 254 (277)
T ss_pred ----------------------hcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHhcccc
Confidence 1112467999999999999998765 5569999999999999999999999888
Q ss_pred cccCCchhHHHhhHHHhh
Q 003056 360 RRTMNASECVARGCALQC 377 (852)
Q Consensus 360 ~~~~n~deava~GAa~~a 377 (852)
..+..|....-+|-|+.+
T Consensus 255 ~~P~~p~y~TPLgIA~sg 272 (277)
T COG4820 255 HLPQHPLYMTPLGIASSG 272 (277)
T ss_pred ccCCCcceechhhhhhcc
Confidence 888888777777776543
No 34
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.58 E-value=1.7e-14 Score=161.91 Aligned_cols=217 Identities=12% Similarity=0.085 Sum_probs=145.2
Q ss_pred cCcEEEEEcCCCCHHHHHHHHHH-HHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeC
Q 003056 137 VVDCCIGIPVYFTDLQRRAVIDA-ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK 215 (852)
Q Consensus 137 ~~~~VitVP~~f~~~qR~al~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~ 215 (852)
-..+++++|..++..+|+.+.+. .+..|++.+.+++++.+|+++|+. .+.+|+|+|+++|+++.+. +
T Consensus 95 ~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~----------~~~lVVDiG~~~t~i~pv~--~ 162 (371)
T cd00012 95 EHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR----------TTGLVVDSGDGVTHVVPVY--D 162 (371)
T ss_pred CCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC----------CeEEEEECCCCeeEEEEEE--C
Confidence 45799999999998888888775 677999999999999999988753 5789999999999998863 3
Q ss_pred CeEEEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCc---c-----------
Q 003056 216 GQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPE---A----------- 281 (852)
Q Consensus 216 ~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~---~----------- 281 (852)
|.+ +........+||+++|+.|.++|..... ..+... -...++.+|+.+..-.. .
T Consensus 163 G~~-~~~~~~~~~~GG~~l~~~l~~~l~~~~~---~~~~~~-------~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~ 231 (371)
T cd00012 163 GYV-LPHAIKRLDLAGRDLTRYLKELLRERGY---ELNSSD-------EREIVRDIKEKLCYVALDIEEEQDKSAKETSL 231 (371)
T ss_pred CEE-chhhheeccccHHHHHHHHHHHHHhcCC---Cccchh-------HHHHHHHHHHhheeecCCHHHHHHhhhccCCc
Confidence 322 2222235689999999999998865421 111111 12345566655422110 0
Q ss_pred cEEEecccCCcceEEEecHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCC--CCCccEEEEeCCCCChHHHHHH
Q 003056 282 PLNIECLMEEKDVRGFIKRDEFEQISAPILE---------RVKRPLEKALAETGLS--VEDVHMVEVVGSSSRVPAIIKI 350 (852)
Q Consensus 282 ~i~ie~l~~~~d~~~~itr~efe~l~~~~~~---------~i~~~i~~~l~~a~~~--~~~I~~ViLvGG~sriP~v~~~ 350 (852)
......|.++ ..+.+..+.| .+++.+++ .+.+.|.++|..+..+ ..-++.|+|+||+|++|.+.++
T Consensus 232 ~~~~~~lpd~--~~i~~~~er~-~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~r 308 (371)
T cd00012 232 LEKTYELPDG--RTIKVGNERF-RAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGER 308 (371)
T ss_pred cceeEECCCC--eEEEEChHHh-hChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHH
Confidence 0001112222 2345555433 33333443 6778888888776432 2235789999999999999999
Q ss_pred HHhhcCC----------CCcccCCchhHHHhhHHHhhhh
Q 003056 351 LTEFFGK----------EPRRTMNASECVARGCALQCAI 379 (852)
Q Consensus 351 l~~~fg~----------~v~~~~n~deava~GAa~~aa~ 379 (852)
|.+.++. .+....++..++-+||+++|..
T Consensus 309 l~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 309 LQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 9998851 1234567888999999998864
No 35
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.56 E-value=6e-13 Score=146.65 Aligned_cols=212 Identities=14% Similarity=0.184 Sum_probs=140.5
Q ss_pred CcCcEE--EEEcCCCCHHHH-HHHHHHHHHc------------CCcceeeechhHHHHHHhhhhcCCC---CCCCCceEE
Q 003056 136 AVVDCC--IGIPVYFTDLQR-RAVIDAATIA------------GLHPLRLFHETTATALAYGIYKTDL---PENDQLNVA 197 (852)
Q Consensus 136 ~~~~~V--itVP~~f~~~qR-~al~~Aa~~A------------Gl~~~~li~Ep~AAAl~y~~~~~~~---~~~~~~~vl 197 (852)
.+.+++ ...|..+-..++ ..+++..... -+..+.++.+|.+|.+.+....... .......++
T Consensus 109 ~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~il 188 (344)
T PRK13917 109 EVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVS 188 (344)
T ss_pred CcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEE
Confidence 344444 589998854453 6676654321 1234678999999988876643211 111346789
Q ss_pred EEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCC
Q 003056 198 FVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSA 277 (852)
Q Consensus 198 v~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~ 277 (852)
|+|+|+||||++++. ++.+ +....+....|..++.+.|.+++..+. ++..+. .. +|.+..+.-
T Consensus 189 vIDIG~~TtD~~v~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~---~~~~~~--~~---~ie~~l~~g------ 251 (344)
T PRK13917 189 VIDFGSGTTDLDTIQ--NLKR-VEEESFVIPKGTIDVYKRIASHISKKE---EGASIT--PY---MLEKGLEYG------ 251 (344)
T ss_pred EEEcCCCcEEEEEEe--CcEE-cccccccccchHHHHHHHHHHHHHhhC---CCCCCC--HH---HHHHHHHcC------
Confidence 999999999999975 4333 333444577999999999998885432 233322 11 222221111
Q ss_pred CCcccEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCC
Q 003056 278 NPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGK 357 (852)
Q Consensus 278 ~~~~~i~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~ 357 (852)
.+.+. .... +.+ ++++.++++.+++++...|...+.. ..+++.|+|+||++++ +++.|++.|+.
T Consensus 252 ----~i~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~ 315 (344)
T PRK13917 252 ----ACKLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD 315 (344)
T ss_pred ----cEEeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC
Confidence 11111 1111 122 5668889999999999998888854 3578999999999988 88999999984
Q ss_pred CCcccCCchhHHHhhHHHhhhhhc
Q 003056 358 EPRRTMNASECVARGCALQCAILS 381 (852)
Q Consensus 358 ~v~~~~n~deava~GAa~~aa~ls 381 (852)
+....||..|.|+|...+|..+.
T Consensus 316 -~~~~~~p~~ANa~G~~~~g~~~~ 338 (344)
T PRK13917 316 -VEKADESQFANVRGYYKYGELLK 338 (344)
T ss_pred -eEEcCChHHHHHHHHHHHHHHHh
Confidence 35667999999999999987554
No 36
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.55 E-value=3.7e-14 Score=159.40 Aligned_cols=299 Identities=15% Similarity=0.174 Sum_probs=178.7
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEcCC---------ceeecHhhHhhhhcCCcchHHHHHHhhC
Q 003056 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDK---------QRFIGTAGAASSTMNPKNSISQIKRLIG 72 (852)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~~~---------~~~~G~~A~~~~~~~p~~~~~~~k~llG 72 (852)
++|+||+||.++++++..+..+.++ +||+|+...+ ..++|.+|.... +
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~---------------~ 58 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR---------------G 58 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEE--------ccceeeEecccccccCCCcceEecchhhhcC---------------C
Confidence 4799999999999998765544332 4888876532 235677662211 0
Q ss_pred CCCCCHHHHHhhccCCceEeeCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCC--CcCcEEEEEcCCCCH
Q 003056 73 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNA--AVVDCCIGIPVYFTD 150 (852)
Q Consensus 73 ~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~--~~~~~VitVP~~f~~ 150 (852)
.. .-..| ..+|.+ .--+.+..+++++... .++. .-..++|++|...+.
T Consensus 59 ~~---------~~~~P-----~~~G~i-------------~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~ 108 (373)
T smart00268 59 GL---------ELKYP-----IEHGIV-------------ENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPK 108 (373)
T ss_pred Cc---------eecCC-----CcCCEE-------------eCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCH
Confidence 00 00112 123422 1123445566665542 2222 235689999999999
Q ss_pred HHHHHHHHHH-HHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCc
Q 003056 151 LQRRAVIDAA-TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSV 229 (852)
Q Consensus 151 ~qR~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~l 229 (852)
.+|+.+.+.+ +..|++-+.++.++.+|+++++ ..+.||+|+|+++|+++.+. +|.. +........+
T Consensus 109 ~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g----------~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~ 175 (373)
T smart00268 109 SNREKILEIMFETFNFPALYIAIQAVLSLYASG----------RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDI 175 (373)
T ss_pred HHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC----------CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccC
Confidence 9999998886 6789999999999999998775 35789999999999999875 3322 2222234689
Q ss_pred ccHHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCC---c------------ccEE-EecccCCcc
Q 003056 230 GGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANP---E------------APLN-IECLMEEKD 293 (852)
Q Consensus 230 GG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~---~------------~~i~-ie~l~~~~d 293 (852)
||.++|+.|.++|...- ...+.. .-...++.+|+.+..-. . .... .-.+.++..
T Consensus 176 GG~~l~~~l~~~l~~~~---~~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpdg~~ 245 (373)
T smart00268 176 AGRDLTDYLKELLSERG---YQFNSS-------AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPDGNT 245 (373)
T ss_pred cHHHHHHHHHHHHHhcC---CCCCcH-------HHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECCCCCE
Confidence 99999999998876510 011110 11234455555442110 0 0000 011223333
Q ss_pred eEEEecHHHHHHHHHHHH---------HHHHHHHHHHHHHcCCCC--CCccEEEEeCCCCChHHHHHHHHhhcC------
Q 003056 294 VRGFIKRDEFEQISAPIL---------ERVKRPLEKALAETGLSV--EDVHMVEVVGSSSRVPAIIKILTEFFG------ 356 (852)
Q Consensus 294 ~~~~itr~efe~l~~~~~---------~~i~~~i~~~l~~a~~~~--~~I~~ViLvGG~sriP~v~~~l~~~fg------ 356 (852)
+. +..+.| .+++.++ ..+.+.|.++|..+.... .-.+.|+|+||+|++|.+.++|.+.+.
T Consensus 246 ~~--~~~er~-~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~ 322 (373)
T smart00268 246 IK--VGNERF-RIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKK 322 (373)
T ss_pred EE--EChHHe-eCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCC
Confidence 33 332222 2233233 367777888887753221 123679999999999999999988873
Q ss_pred CC--CcccCCchhHHHhhHHHhhhh
Q 003056 357 KE--PRRTMNASECVARGCALQCAI 379 (852)
Q Consensus 357 ~~--v~~~~n~deava~GAa~~aa~ 379 (852)
.+ +....++..++=+||+++|..
T Consensus 323 ~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 323 LKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred ceeEEecCCCCccceEeCcccccCc
Confidence 11 223345556677787777653
No 37
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.32 E-value=3e-10 Score=129.24 Aligned_cols=206 Identities=12% Similarity=0.060 Sum_probs=129.1
Q ss_pred CcEEEEEcCCCCHHHHHHHHHHH-HHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCC
Q 003056 138 VDCCIGIPVYFTDLQRRAVIDAA-TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKG 216 (852)
Q Consensus 138 ~~~VitVP~~f~~~qR~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~ 216 (852)
..++||.|..++..+|+.+.+.+ +..|++-+.+..++.+++++++............+-||+|+|+|+|+++-|. +|
T Consensus 103 ~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~--~G 180 (414)
T PTZ00280 103 HYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVV--DG 180 (414)
T ss_pred CceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEE--CC
Confidence 45899999999999999988775 6668999999999999987763322110000134569999999999998763 23
Q ss_pred eEEEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCc----------------
Q 003056 217 QLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPE---------------- 280 (852)
Q Consensus 217 ~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~---------------- 280 (852)
.. +.....-..+||++++..|.++|.++- ..+... ..+..++.+|+.+..-..
T Consensus 181 ~~-l~~~~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~ 249 (414)
T PTZ00280 181 YV-IGSSIKHIPLAGRDITNFIQQMLRERG-----EPIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNH 249 (414)
T ss_pred EE-cccceEEecCcHHHHHHHHHHHHHHcC-----CCCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccc
Confidence 22 222212357999999999999886431 112110 012345556665532110
Q ss_pred -ccEEEecccCCcceEEEecHHHHHH---HHHHHH------HHHHHHHHHHHHHcCCCC--CCccEEEEeCCCCChHHHH
Q 003056 281 -APLNIECLMEEKDVRGFIKRDEFEQ---ISAPIL------ERVKRPLEKALAETGLSV--EDVHMVEVVGSSSRVPAII 348 (852)
Q Consensus 281 -~~i~ie~l~~~~d~~~~itr~efe~---l~~~~~------~~i~~~i~~~l~~a~~~~--~~I~~ViLvGG~sriP~v~ 348 (852)
..+..+....+....+.|..+.|.- ++.|-+ ..+.++|.++|..+.... .-.+.|+|+||+|.+|.+.
T Consensus 250 ~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~ 329 (414)
T PTZ00280 250 FKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFD 329 (414)
T ss_pred cceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHH
Confidence 0122221112333466777766642 333321 145677777877764321 2246899999999999999
Q ss_pred HHHHhhcC
Q 003056 349 KILTEFFG 356 (852)
Q Consensus 349 ~~l~~~fg 356 (852)
++|.+.+.
T Consensus 330 eRL~~El~ 337 (414)
T PTZ00280 330 KRLQRDVR 337 (414)
T ss_pred HHHHHHHH
Confidence 99998885
No 38
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.29 E-value=8.4e-11 Score=130.17 Aligned_cols=182 Identities=25% Similarity=0.338 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHcCCcceeeechhHHHHHHhhhhcCCCCCC-CCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCc
Q 003056 151 LQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPEN-DQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSV 229 (852)
Q Consensus 151 ~qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~-~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~l 229 (852)
..-..+.++++.|||++..+--++.|.+-.|......++.. ....++++|+|+.++.++++. +|.+.. + ....+
T Consensus 136 ~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--~g~~~f--~-R~i~~ 210 (340)
T PF11104_consen 136 EIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--NGKPIF--S-RSIPI 210 (340)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--TTEEEE--E-EEES-
T ss_pred HHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--CCEEEE--E-EEEee
Confidence 34567788999999999877667777654444432233322 346799999999999999954 444322 2 24689
Q ss_pred ccHHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCCcceEEEecHHHHHHHHHH
Q 003056 230 GGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAP 309 (852)
Q Consensus 230 GG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~itr~efe~l~~~ 309 (852)
||.+|++.|++.+. ++. .+|+..|..-+... +...+++.+
T Consensus 211 G~~~l~~~i~~~~~--------i~~-----------~~Ae~~k~~~~l~~---------------------~~~~~~l~~ 250 (340)
T PF11104_consen 211 GGNDLTEAIARELG--------IDF-----------EEAEELKRSGGLPE---------------------EYDQDALRP 250 (340)
T ss_dssp SHHHHHHHHHHHTT----------H-----------HHHHHHHHHT---------------------------HHHHHHH
T ss_pred CHHHHHHHHHHhcC--------CCH-----------HHHHHHHhcCCCCc---------------------chHHHHHHH
Confidence 99999999997642 221 45566654321100 222345555
Q ss_pred HHHHHHHHHHHHHHH--cCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCc---------ccC----------CchhH
Q 003056 310 ILERVKRPLEKALAE--TGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPR---------RTM----------NASEC 368 (852)
Q Consensus 310 ~~~~i~~~i~~~l~~--a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~---------~~~----------n~dea 368 (852)
+++++..-|.+.++- +......|+.|+|+||++++|.+.+.|++.||.++. ... .|..+
T Consensus 251 ~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~a 330 (340)
T PF11104_consen 251 FLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQEDAPQFA 330 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhhhhHHH
Confidence 555555555555552 223345799999999999999999999999985431 111 25668
Q ss_pred HHhhHHHhh
Q 003056 369 VARGCALQC 377 (852)
Q Consensus 369 va~GAa~~a 377 (852)
+|.|.|+.+
T Consensus 331 vA~GLAlR~ 339 (340)
T PF11104_consen 331 VALGLALRG 339 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcC
Confidence 999999864
No 39
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.27 E-value=4.1e-10 Score=125.48 Aligned_cols=165 Identities=15% Similarity=0.176 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHcCCcceeeechhHHHHHHhhhhcCCCC-CCCCc-eEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCC
Q 003056 150 DLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLP-ENDQL-NVAFVDIGHASLQVCIAGFKKGQLKILGHSFDR 227 (852)
Q Consensus 150 ~~qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~-~~~~~-~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~ 227 (852)
....+.+.++++.||+++..+.-+|.|.+-.+.+....+. ..... .++++|+|+++|+++++. +|.+.. ....
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~--~g~~~~---~r~i 216 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLH--PGRMLF---TREV 216 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEE--CCeEEE---EEEe
Confidence 4556778899999999999999999988766531111111 11233 499999999999999974 333322 2256
Q ss_pred CcccHHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCCcceEEEecHHHHHHHH
Q 003056 228 SVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQIS 307 (852)
Q Consensus 228 ~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~itr~efe~l~ 307 (852)
.+||.+|++.|.+. ++++. ..||+.|........ . -.+++
T Consensus 217 ~~G~~~i~~~i~~~--------~~~~~-----------~~Ae~~k~~~~~~~~-----------~----------~~~~~ 256 (348)
T TIGR01175 217 PFGTRQLTSELSRA--------YGLNP-----------EEAGEAKQQGGLPLL-----------Y----------DPEVL 256 (348)
T ss_pred echHHHHHHHHHHH--------cCCCH-----------HHHHHHHhcCCCCCc-----------h----------hHHHH
Confidence 89999999988743 23322 667777764321110 0 02345
Q ss_pred HHHHHHHHHHHHHHHHHc--CCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCC
Q 003056 308 APILERVKRPLEKALAET--GLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEP 359 (852)
Q Consensus 308 ~~~~~~i~~~i~~~l~~a--~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v 359 (852)
++.++++..-|.+.|+-. ......++.|+|+||+++++.+.+.|.+.||.++
T Consensus 257 ~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v 310 (348)
T TIGR01175 257 RRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPT 310 (348)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCe
Confidence 556666666666666432 2233468999999999999999999999998544
No 40
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.24 E-value=5.7e-11 Score=134.68 Aligned_cols=308 Identities=15% Similarity=0.189 Sum_probs=174.0
Q ss_pred eEEEEEcCccceEEEEEECCceEEEeCCCCCccceEEEEEcCC-----ceeecHhhHhhhhcCCcchHHHHHHhhCCCCC
Q 003056 2 SVVGFDLGNESCIVAVARQRGIDVVLNDESKRETPSIVCFGDK-----QRFIGTAGAASSTMNPKNSISQIKRLIGRQFS 76 (852)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~~~iv~n~~~~r~~Ps~V~~~~~-----~~~~G~~A~~~~~~~p~~~~~~~k~llG~~~~ 76 (852)
.+|-||+|+.++++++..+..+.+ .+||+++.... ..++|..+... .+
T Consensus 5 ~~vViD~Gs~~~k~G~age~~P~~--------v~ps~~~~~~~~~~~~~~~~g~~~~~~---~~---------------- 57 (393)
T PF00022_consen 5 KPVVIDNGSSTIKAGFAGEDLPRV--------VIPSVVGRPRDKNSSNDYYVGDEALSP---RS---------------- 57 (393)
T ss_dssp SEEEEEECSSEEEEEETTSSS-SE--------EEESEEEEESSSSSSSSCEETHHHHHT---GT----------------
T ss_pred CEEEEECCCceEEEEECCCCCCCC--------cCCCccccccccccceeEEeecccccc---hh----------------
Confidence 578999999999999975444332 24887776443 24567663220 00
Q ss_pred CHHHHHhhccCCceEe-eCCCCceEEEEEEcCceeeecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHH
Q 003056 77 DPELQRDLKSLPFAVT-EGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRA 155 (852)
Q Consensus 77 ~~~v~~~~~~~~~~~~-~~~~g~~~~~v~~~~~~~~~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~a 155 (852)
.+.+. +..+|. +.--+.+..++.++.... -.....-..++++.|..++..+|+.
T Consensus 58 -----------~~~~~~p~~~g~-------------i~~~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~~ 112 (393)
T PF00022_consen 58 -----------NLELRSPIENGV-------------IVDWDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQREK 112 (393)
T ss_dssp -----------GEEEEESEETTE-------------ESSHHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHHH
T ss_pred -----------heeeeeeccccc-------------cccccccccccccccccc-cccccccceeeeeccccCCchhhhh
Confidence 00000 001221 111234455566555431 1112234569999999999999988
Q ss_pred HHHHH-HHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHH
Q 003056 156 VIDAA-TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDF 234 (852)
Q Consensus 156 l~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~ 234 (852)
+.+.+ +..|++-+.+++++.+|+++++. .+-||+|+|++.|.|+-| .+|.+ +........+||+++
T Consensus 113 l~e~lfE~~~~~~v~~~~~~~~a~~~~g~----------~tglVVD~G~~~t~v~pV--~dG~~-~~~~~~~~~~GG~~l 179 (393)
T PF00022_consen 113 LAEILFEKFGVPSVYFIPSPLLALYASGR----------TTGLVVDIGYSSTSVVPV--VDGYV-LPHSIKRSPIGGDDL 179 (393)
T ss_dssp HHHHHHHTS--SEEEEEEHHHHHHHHTTB----------SSEEEEEESSS-EEEEEE--ETTEE--GGGBEEES-SHHHH
T ss_pred hhhhhhcccccceeeeeeccccccccccc----------ccccccccceeeeeeeee--eeccc-cccccccccccHHHH
Confidence 77765 67799999999999999877753 357999999999998876 33322 211112357999999
Q ss_pred HHHHHHHHHHH-HH--hhhccccc----CCHHHHHHHHHHHHHhhhhc---C------------CCCcccEEEecccCCc
Q 003056 235 DEVLFQHFAAK-FK--EEYKIDVS----QNARASLRLRVACEKLKKVL---S------------ANPEAPLNIECLMEEK 292 (852)
Q Consensus 235 D~~l~~~l~~~-~~--~k~~~~~~----~~~~~~~rL~~~aek~K~~L---S------------~~~~~~i~ie~l~~~~ 292 (852)
+..|.++|..+ +. ..+..... ........-....+.+|+.+ + ......+.+ .++.
T Consensus 180 t~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~l---Pdg~ 256 (393)
T PF00022_consen 180 TEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYEL---PDGQ 256 (393)
T ss_dssp HHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE----TTSS
T ss_pred HHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceeccc---cccc
Confidence 99999988873 10 00000000 00000001112222333222 1 111122222 2333
Q ss_pred ceEEEecHHHHHHHHHHHHH----------------HHHHHHHHHHHHcCCCCCC--ccEEEEeCCCCChHHHHHHHHhh
Q 003056 293 DVRGFIKRDEFEQISAPILE----------------RVKRPLEKALAETGLSVED--VHMVEVVGSSSRVPAIIKILTEF 354 (852)
Q Consensus 293 d~~~~itr~efe~l~~~~~~----------------~i~~~i~~~l~~a~~~~~~--I~~ViLvGG~sriP~v~~~l~~~ 354 (852)
.+.+..+.| .+.+.+|+ .+..+|.+++..+...... ...|+|+||+|++|.+.++|.+.
T Consensus 257 --~i~~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~e 333 (393)
T PF00022_consen 257 --TIILGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQE 333 (393)
T ss_dssp --EEEESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHH
T ss_pred --ccccccccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHH
Confidence 455555544 33444432 5778888888876543222 47899999999999999999887
Q ss_pred cCC--------CCcccC-CchhHHHhhHHHhhhhh
Q 003056 355 FGK--------EPRRTM-NASECVARGCALQCAIL 380 (852)
Q Consensus 355 fg~--------~v~~~~-n~deava~GAa~~aa~l 380 (852)
+.. ++.... ++..++=+||+++|..-
T Consensus 334 L~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 334 LRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp HHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred hhhhhhccccceeccCchhhhhcccccceeeeccc
Confidence 631 233333 78889999999998743
No 41
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.21 E-value=1.3e-09 Score=119.53 Aligned_cols=208 Identities=15% Similarity=0.149 Sum_probs=128.1
Q ss_pred CcCcEEEEEcCCCCHHHHHHHHHHHHHc---------CCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCcee
Q 003056 136 AVVDCCIGIPVYFTDLQRRAVIDAATIA---------GLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASL 206 (852)
Q Consensus 136 ~~~~~VitVP~~f~~~qR~al~~Aa~~A---------Gl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~ 206 (852)
.+..+|+..|..+...+|..+++..... -+..+.++.+|.+|.+.|........ .....++|+|+|++||
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~-~~~~~~lVIDIG~~Tt 179 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLL-TGKEQSLIIDPGYFTF 179 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcc-cCcCcEEEEecCCCee
Confidence 3557999999999999999998886531 23457889999999888765432111 1356789999999999
Q ss_pred EEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEe
Q 003056 207 QVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIE 286 (852)
Q Consensus 207 dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie 286 (852)
|+.++ .++.+ +....+....|-.++-+.|.+.|.+++ +.+...+...+. .+...-|. +.+
T Consensus 180 D~~~~--~~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~----g~~~~~~~~~i~---~~l~~g~~---------~~~- 239 (320)
T TIGR03739 180 DWLVA--RGMRL-VQKRSGSVNGGMSDIYRLLAAEISKDI----GTPAYRDIDRID---LALRTGKQ---------PRI- 239 (320)
T ss_pred eeehc--cCCEE-cccccCCchhHHHHHHHHHHHHHHhhc----CCCCccCHHHHH---HHHHhCCc---------eee-
Confidence 99876 34444 444555677898888888888777654 333111111111 11111110 000
Q ss_pred cccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCC-CCcccCCc
Q 003056 287 CLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGK-EPRRTMNA 365 (852)
Q Consensus 287 ~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~-~v~~~~n~ 365 (852)
.....| |+ +.++ .....++++..-|.+.+ + ...+++.|+|+||++. .+++.|++.|+. .+....||
T Consensus 240 -~gk~~d----i~-~~~~-~~~~~~~~~v~~i~~~~---~-~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp 306 (320)
T TIGR03739 240 -YQKPVD----IK-RCLE-LAETVAQQAVSTMMTWI---G-APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEP 306 (320)
T ss_pred -cceecC----ch-HHHH-HHHHHHHHHHHHHHHhc---c-cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCc
Confidence 001111 21 1111 22333333333333333 1 1246899999999987 568999999975 34456789
Q ss_pred hhHHHhhHHHhh
Q 003056 366 SECVARGCALQC 377 (852)
Q Consensus 366 deava~GAa~~a 377 (852)
..|.|+|-..++
T Consensus 307 ~~ANarG~~~~g 318 (320)
T TIGR03739 307 MFANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHHhh
Confidence 999999987765
No 42
>PTZ00281 actin; Provisional
Probab=99.15 E-value=7.7e-10 Score=124.09 Aligned_cols=217 Identities=12% Similarity=0.125 Sum_probs=134.2
Q ss_pred cCcEEEEEcCCCCHHHHHHHHHH-HHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeC
Q 003056 137 VVDCCIGIPVYFTDLQRRAVIDA-ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK 215 (852)
Q Consensus 137 ~~~~VitVP~~f~~~qR~al~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~ 215 (852)
-..++||-|..++..+|+.|.+. .+..+++-+.+...+.+++++++ ..+-||+|+|++.|.++-|.-
T Consensus 101 ~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g----------~~tglVVDiG~~~t~v~PV~d-- 168 (376)
T PTZ00281 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG----------RTTGIVMDSGDGVSHTVPIYE-- 168 (376)
T ss_pred cCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcC----------CceEEEEECCCceEEEEEEEe--
Confidence 34688899999999999998875 57788988899999999887654 246799999999999875422
Q ss_pred CeEEEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCC---c---------ccE
Q 003056 216 GQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANP---E---------APL 283 (852)
Q Consensus 216 ~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~---~---------~~i 283 (852)
|.. +........+||.++++.|.+.|..+ +..... . .- ...++.+|+.+..-. . ...
T Consensus 169 G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~-~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~ 237 (376)
T PTZ00281 169 GYA-LPHAILRLDLAGRDLTDYMMKILTER-----GYSFTT-T-AE---REIVRDIKEKLAYVALDFEAEMQTAASSSAL 237 (376)
T ss_pred ccc-chhheeeccCcHHHHHHHHHHHHHhc-----CCCCCc-H-HH---HHHHHHHHHhcEEecCCchHHHHhhhcCccc
Confidence 221 22223346799999999999887542 111111 0 00 123445555542111 0 001
Q ss_pred EEe-cccCCcceEEEecHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCCC--CCccEEEEeCCCCChHHHHHHHH
Q 003056 284 NIE-CLMEEKDVRGFIKRDEF---EQISAPIL-----ERVKRPLEKALAETGLSV--EDVHMVEVVGSSSRVPAIIKILT 352 (852)
Q Consensus 284 ~ie-~l~~~~d~~~~itr~ef---e~l~~~~~-----~~i~~~i~~~l~~a~~~~--~~I~~ViLvGG~sriP~v~~~l~ 352 (852)
... .|.++.. +.|..+.| |-+++|-+ ..+.++|.+++..+.... .-.+.|+|+||+|.+|.+.++|.
T Consensus 238 ~~~y~LPdg~~--i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~ 315 (376)
T PTZ00281 238 EKSYELPDGQV--ITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMN 315 (376)
T ss_pred ceeEECCCCCE--EEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHH
Confidence 111 1223332 44554443 22333321 145677777777664321 12468999999999999999998
Q ss_pred hhcC----C--C--CcccCCchhHHHhhHHHhhh
Q 003056 353 EFFG----K--E--PRRTMNASECVARGCALQCA 378 (852)
Q Consensus 353 ~~fg----~--~--v~~~~n~deava~GAa~~aa 378 (852)
.-+. . + +..+.++..++=+|++++|.
T Consensus 316 ~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 316 KELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 8773 1 1 23334566777888888876
No 43
>PTZ00452 actin; Provisional
Probab=99.12 E-value=2.3e-09 Score=119.91 Aligned_cols=216 Identities=14% Similarity=0.119 Sum_probs=132.3
Q ss_pred cCcEEEEEcCCCCHHHHHHHHHHH-HHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeC
Q 003056 137 VVDCCIGIPVYFTDLQRRAVIDAA-TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK 215 (852)
Q Consensus 137 ~~~~VitVP~~f~~~qR~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~ 215 (852)
-..+++|-|...+..+|+.|.+.+ +..+.+.+.+.+.+.++++++| ..+-||+|+|.|.|+++-|. +
T Consensus 100 ~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g----------~~tglVVDiG~~~t~v~PV~--d 167 (375)
T PTZ00452 100 DQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSG----------KTIGLVVDSGEGVTHCVPVF--E 167 (375)
T ss_pred cCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCC----------CceeeeecCCCCcceEEEEE--C
Confidence 356889999999999998887765 6678888889999998887654 24679999999999987652 3
Q ss_pred CeEEEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCc------------ccE
Q 003056 216 GQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPE------------APL 283 (852)
Q Consensus 216 ~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~------------~~i 283 (852)
|.. +........+||.+++..|.+.|..+ +..+... .. ...++.+|+.+..-.. ...
T Consensus 168 G~~-l~~~~~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~-~~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~ 236 (375)
T PTZ00452 168 GHQ-IPQAITKINLAGRLCTDYLTQILQEL-----GYSLTEP-HQ----RIIVKNIKERLCYTALDPQDEKRIYKESNSQ 236 (375)
T ss_pred CEE-eccceEEeeccchHHHHHHHHHHHhc-----CCCCCCH-HH----HHHHHHHHHHhccccCcHHHHHHHhhccCCc
Confidence 322 22222245799999999999887542 1111110 00 0123334444321110 000
Q ss_pred E-EecccCCcceEEEecHHHHHHHHHHHH---------HHHHHHHHHHHHHcCCC--CCCccEEEEeCCCCChHHHHHHH
Q 003056 284 N-IECLMEEKDVRGFIKRDEFEQISAPIL---------ERVKRPLEKALAETGLS--VEDVHMVEVVGSSSRVPAIIKIL 351 (852)
Q Consensus 284 ~-ie~l~~~~d~~~~itr~efe~l~~~~~---------~~i~~~i~~~l~~a~~~--~~~I~~ViLvGG~sriP~v~~~l 351 (852)
. .-.|.++. .+.+..+.| .+.+.+| ..+.++|.+++..+... ..-...|+|+||+|.+|.+.++|
T Consensus 237 ~~~y~LPDg~--~i~l~~er~-~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL 313 (375)
T PTZ00452 237 DSPYKLPDGN--ILTIKSQKF-RCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRL 313 (375)
T ss_pred CceEECCCCC--EEEeehHHh-cCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHH
Confidence 0 01122333 344566555 2222222 23567777777776432 22247899999999999999999
Q ss_pred HhhcC----C--C--CcccCCchhHHHhhHHHhhh
Q 003056 352 TEFFG----K--E--PRRTMNASECVARGCALQCA 378 (852)
Q Consensus 352 ~~~fg----~--~--v~~~~n~deava~GAa~~aa 378 (852)
.+-+. . + +..+.+...++=+|++++|.
T Consensus 314 ~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 314 SNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred HHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 88763 1 1 22233455566778888775
No 44
>PTZ00004 actin-2; Provisional
Probab=99.09 E-value=2.9e-09 Score=119.55 Aligned_cols=217 Identities=10% Similarity=0.084 Sum_probs=133.7
Q ss_pred cCcEEEEEcCCCCHHHHHHHHHHH-HHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeC
Q 003056 137 VVDCCIGIPVYFTDLQRRAVIDAA-TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK 215 (852)
Q Consensus 137 ~~~~VitVP~~f~~~qR~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~ 215 (852)
-..+++|-|.+++..+|+.+.+.+ +..|++.+.++.++.+++++++ ..+-||+|+|++.|+++-|. +
T Consensus 101 ~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g----------~~tglVVDiG~~~t~v~pV~--d 168 (378)
T PTZ00004 101 EHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASG----------RTTGIVLDSGDGVSHTVPIY--E 168 (378)
T ss_pred cCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcC----------CceEEEEECCCCcEEEEEEE--C
Confidence 346889999999999998776664 7789999999999999887654 24679999999999987752 3
Q ss_pred CeEEEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCC------------c-cc
Q 003056 216 GQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANP------------E-AP 282 (852)
Q Consensus 216 ~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~------------~-~~ 282 (852)
|.. +.......++||.+++..|.+.|..+ .+.+... .. ...++.+|+.+.... . ..
T Consensus 169 G~~-l~~~~~~~~~GG~~lt~~L~~lL~~~---~~~~~~~----~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~ 237 (378)
T PTZ00004 169 GYS-LPHAIHRLDVAGRDLTEYMMKILHER---GTTFTTT----AE---KEIVRDIKEKLCYIALDFDEEMGNSAGSSDK 237 (378)
T ss_pred CEE-eecceeeecccHHHHHHHHHHHHHhc---CCCCCcH----HH---HHHHHHHhhcceeecCCHHHHHhhhhcCccc
Confidence 322 22233345799999999999987542 1111111 11 122344454432110 0 00
Q ss_pred EEEe-cccCCcceEEEecHHHHH---HHHHHH------HHHHHHHHHHHHHHcCCCC--CCccEEEEeCCCCChHHHHHH
Q 003056 283 LNIE-CLMEEKDVRGFIKRDEFE---QISAPI------LERVKRPLEKALAETGLSV--EDVHMVEVVGSSSRVPAIIKI 350 (852)
Q Consensus 283 i~ie-~l~~~~d~~~~itr~efe---~l~~~~------~~~i~~~i~~~l~~a~~~~--~~I~~ViLvGG~sriP~v~~~ 350 (852)
.... .|.++.. +.|..+.|. -++.|- ...+.++|.+++..+..+. .-...|+|+||+|.+|.+.++
T Consensus 238 ~~~~y~lPdg~~--i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~R 315 (378)
T PTZ00004 238 YEESYELPDGTI--ITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPER 315 (378)
T ss_pred cceEEECCCCCE--EEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHH
Confidence 0111 1223332 344554442 233332 2345677777777764322 124789999999999999999
Q ss_pred HHhhcCC--------CCcccCCchhHHHhhHHHhhh
Q 003056 351 LTEFFGK--------EPRRTMNASECVARGCALQCA 378 (852)
Q Consensus 351 l~~~fg~--------~v~~~~n~deava~GAa~~aa 378 (852)
|..-+.. .+....++..++=+||+++|.
T Consensus 316 L~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 316 LTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 9887731 122334566666678877765
No 45
>PTZ00466 actin-like protein; Provisional
Probab=99.07 E-value=2.9e-09 Score=119.29 Aligned_cols=216 Identities=10% Similarity=0.080 Sum_probs=132.7
Q ss_pred cCcEEEEEcCCCCHHHHHHHHHHH-HHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeC
Q 003056 137 VVDCCIGIPVYFTDLQRRAVIDAA-TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK 215 (852)
Q Consensus 137 ~~~~VitVP~~f~~~qR~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~ 215 (852)
-..+++|-|..++..+|+.+.+.+ +..|++-+.+.+.+.+++++++ ..+-+|+|+|.+.|.++-|. +
T Consensus 106 ~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g----------~~tglVVD~G~~~t~v~PV~--~ 173 (380)
T PTZ00466 106 EHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCG----------KTNGTVLDCGDGVCHCVSIY--E 173 (380)
T ss_pred cCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcC----------CceEEEEeCCCCceEEEEEE--C
Confidence 346888999999999999886664 7778888899999998887664 24679999999999987653 3
Q ss_pred CeEEEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCC-----------cccEE
Q 003056 216 GQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANP-----------EAPLN 284 (852)
Q Consensus 216 ~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~-----------~~~i~ 284 (852)
|.. +........+||++++..|.+.|.+. .+..+.. . -+..++.+|+.+..-. .....
T Consensus 174 G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~---~~~~~~~----~---~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~ 242 (380)
T PTZ00466 174 GYS-ITNTITRTDVAGRDITTYLGYLLRKN---GHLFNTS----A---EMEVVKNMKENCCYVSFNMNKEKNSSEKALTT 242 (380)
T ss_pred CEE-eecceeEecCchhHHHHHHHHHHHhc---CCCCCcH----H---HHHHHHHHHHhCeEecCChHHHHhhccccccc
Confidence 322 22222245799999999999887532 1111111 0 1123344454432100 00000
Q ss_pred Ee-cccCCcceEEEecHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCCC--CCccEEEEeCCCCChHHHHHHHH
Q 003056 285 IE-CLMEEKDVRGFIKRDEFEQISAPILE---------RVKRPLEKALAETGLSV--EDVHMVEVVGSSSRVPAIIKILT 352 (852)
Q Consensus 285 ie-~l~~~~d~~~~itr~efe~l~~~~~~---------~i~~~i~~~l~~a~~~~--~~I~~ViLvGG~sriP~v~~~l~ 352 (852)
.. .|.++. .+.|..+.|. +.+.+|+ .+.++|.+++..+..+. .-...|+|+||+|.+|.+.++|.
T Consensus 243 ~~y~LPdg~--~i~l~~er~~-~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~ 319 (380)
T PTZ00466 243 LPYILPDGS--QILIGSERYR-APEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLL 319 (380)
T ss_pred eeEECCCCc--EEEEchHHhc-CcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHH
Confidence 11 122333 3445655552 2333332 45667777777764332 12478999999999999999998
Q ss_pred hhcCC----C----CcccCCchhHHHhhHHHhhh
Q 003056 353 EFFGK----E----PRRTMNASECVARGCALQCA 378 (852)
Q Consensus 353 ~~fg~----~----v~~~~n~deava~GAa~~aa 378 (852)
..+.. . +....++..++=+|++++|.
T Consensus 320 ~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 320 NEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 87731 1 22233455566678887775
No 46
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.99 E-value=3.9e-07 Score=95.27 Aligned_cols=177 Identities=20% Similarity=0.297 Sum_probs=113.7
Q ss_pred HHHHHHHHHHcCCcceeeechhHHHHHHhhhhcCCC-CCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCccc
Q 003056 153 RRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDL-PENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGG 231 (852)
Q Consensus 153 R~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~-~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG 231 (852)
-....+|++.|||...-+--|..|.--+|...-..+ +......++|+|+|+..+.++++.-.. ++.+. +..+||
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk----~ly~r-~~~~g~ 225 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGK----ILYTR-EVPVGT 225 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCe----eeeEe-eccCcH
Confidence 355678999999998888778888766665322222 222234479999999999999975442 44444 788999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCCcceEEEecHHHHHHHHHHHH
Q 003056 232 RDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPIL 311 (852)
Q Consensus 232 ~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~itr~efe~l~~~~~ 311 (852)
+.++..|.+. |+++. ..++.+|....-.. |+. -+-+..+...+.
T Consensus 226 ~Qlt~~i~r~--------~~L~~-----------~~a~~~k~~~~~P~-------------~y~----~~vl~~f~~~l~ 269 (354)
T COG4972 226 DQLTQEIQRA--------YSLTE-----------EKAEEIKRGGTLPT-------------DYG----SEVLRPFLGELT 269 (354)
T ss_pred HHHHHHHHHH--------hCCCh-----------hHhHHHHhCCCCCC-------------chh----HHHHHHHHHHHH
Confidence 9999998754 34443 44566665443222 111 111223334444
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhH
Q 003056 312 ERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGC 373 (852)
Q Consensus 312 ~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GA 373 (852)
++|.+.|+-.+..++ ..+|++|+|.||++++-.+.+.+.+.++.+. ...||-...+.++
T Consensus 270 ~ei~Rslqfy~~~s~--~~~id~i~LaGggA~l~gL~~~i~qrl~~~t-~vanPf~~~~~~~ 328 (354)
T COG4972 270 QEIRRSLQFYLSQSE--MVDIDQILLAGGGASLEGLAAAIQQRLSIPT-EVANPFAYMALNV 328 (354)
T ss_pred HHHHHHHHHHHhccc--cceeeEEEEecCCcchhhHHHHHHHHhCCCe-EeeCHHHHHhhhh
Confidence 444444444444443 4579999999999999999999999998654 3345544433333
No 47
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.85 E-value=1.4e-07 Score=99.75 Aligned_cols=170 Identities=18% Similarity=0.210 Sum_probs=105.2
Q ss_pred eeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHHHHHHHHHh
Q 003056 169 RLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKE 248 (852)
Q Consensus 169 ~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~ 248 (852)
..++|.+|-+.+..+. .| ..-.|+|+||..+-+.++. +|.+.-......+..|+-.|.+.+++.|
T Consensus 73 ~~~~ei~~~~~g~~~~---~~----~~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l------ 137 (248)
T TIGR00241 73 KIVTEISCHGKGANYL---AP----EARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRL------ 137 (248)
T ss_pred CceEEhhHHHHHHHHH---CC----CCCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHc------
Confidence 4678888876554332 12 2235999999998888876 5554333344456788888888887653
Q ss_pred hhcccccCCHHHHHHHHHHHHHhhhh----cCCCCcccEEEec-ccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 003056 249 EYKIDVSQNARASLRLRVACEKLKKV----LSANPEAPLNIEC-LMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALA 323 (852)
Q Consensus 249 k~~~~~~~~~~~~~rL~~~aek~K~~----LS~~~~~~i~ie~-l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~ 323 (852)
++++ ++++.++.. ..-+....+..+. +... +.-..++ ++++..++..+...+.+.+.
T Consensus 138 --~~~~-----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~--l~~g~~~---~di~~~~~~~va~~i~~~~~ 199 (248)
T TIGR00241 138 --GVSV-----------EELGSLAEKADRKAKISSMCTVFAESELISL--LAAGVKK---EDILAGVYESIAERVAEMLQ 199 (248)
T ss_pred --CCCH-----------HHHHHHHhcCCCCCCcCCEeEEEechhHHHH--HHCCCCH---HHHHHHHHHHHHHHHHHHHh
Confidence 3332 222322221 1111111122111 0000 0111233 45666666666666666665
Q ss_pred HcCCCCCCcc-EEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHh
Q 003056 324 ETGLSVEDVH-MVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQ 376 (852)
Q Consensus 324 ~a~~~~~~I~-~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~ 376 (852)
..+ ++ .|+|+||.++.|++.+.+.+.++.++..+-++..+.|+|||++
T Consensus 200 ~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 200 RLK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred hcC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 433 44 7999999999999999999999999988889999999999973
No 48
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.82 E-value=5.3e-08 Score=106.59 Aligned_cols=173 Identities=17% Similarity=0.218 Sum_probs=96.8
Q ss_pred cceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHHHHHHH
Q 003056 166 HPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAK 245 (852)
Q Consensus 166 ~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~ 245 (852)
..+.+++|+.||.+.+... +. +...+||+|+||+|+|++++.- +.-.+-...+...+|-..+-..|.+.|...
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~---~~--~~~~~lVVDIGG~T~Dv~~v~~--~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~ 213 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMD---LD--EDESVLVVDIGGRTTDVAVVRG--GLPDISKCSGTPEIGVSDLYDAIAQALRSA 213 (318)
T ss_dssp EEEEEEESSHHHHHHHHHT---S---TTSEEEEEEE-SS-EEEEEEEG--GG--EEEEEEETTSSTHHHHHHHHHHTT--
T ss_pred eeEEEEcccHHHHHHHHHh---hc--ccCcEEEEEcCCCeEEeeeecC--CccccchhccCCchhHHHHHHHHHHHHHHh
Confidence 3678899999999887654 21 2467999999999999998852 222233344457899998888888776541
Q ss_pred HHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 003056 246 FKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAET 325 (852)
Q Consensus 246 ~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a 325 (852)
+...+. .....+. +.+. .... +.....+.+ .++++.++++..+.++..-|.+.+.
T Consensus 214 -----~~~~s~--~~~~~ii----~~~~-----~~~~--~~~~i~~~~-----~~~~v~~~i~~~~~~l~~~i~~~~~-- 268 (318)
T PF06406_consen 214 -----GIDTSE--LQIDDII----RNRK-----DKGY--LRQVINDED-----VIDDVSEVIEEAVEELINRILRELG-- 268 (318)
T ss_dssp -----SBHHHH--HHHHHHH----HTTT------HHH--HHHHSSSHH-----HHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred -----cCCCcH--HHHHHHH----Hhhh-----ccce--ecccccchh-----hHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 111100 0001110 0000 0000 000001110 1334445555555555554444443
Q ss_pred CCCCCCccEEEEeCCCCChHHHHHHHHhhcC---CCCcccCCchhHHHhhHH
Q 003056 326 GLSVEDVHMVEVVGSSSRVPAIIKILTEFFG---KEPRRTMNASECVARGCA 374 (852)
Q Consensus 326 ~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg---~~v~~~~n~deava~GAa 374 (852)
...+++.|+|+||++. .+.+.|++.|+ ..+...-||..|-|+|-+
T Consensus 269 --~~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 269 --DFSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp --TS-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred --hhccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 2357899999999974 67889999987 346677799999999964
No 49
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=98.78 E-value=4.4e-07 Score=96.13 Aligned_cols=116 Identities=18% Similarity=0.175 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHH-HHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCc
Q 003056 116 QVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDA-ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQL 194 (852)
Q Consensus 116 el~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~ 194 (852)
+++.++++|..+.- -+....-.-++||-|++=+...|+.+.+. .+...++...|..+++++|++.| ..
T Consensus 86 D~~~~~w~~~~~~~-Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G----------rs 154 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQ-LKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG----------RS 154 (426)
T ss_pred HHHHHHHHHHHhhh-hhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC----------CC
Confidence 45666777666421 11122234589999999889999887766 47778888889999988887654 35
Q ss_pred eEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHHHHHHH
Q 003056 195 NVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAK 245 (852)
Q Consensus 195 ~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~ 245 (852)
+.||+|+|+++|.++-| .+|.+--.+.. -..+||+-++..+.+.|..+
T Consensus 155 talVvDiGa~~~svsPV--~DG~Vlqk~vv-ks~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 155 TALVVDIGATHTSVSPV--HDGYVLQKGVV-KSPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred ceEEEEecCCCceeeee--ecceEeeeeeE-ecccchHHHHHHHHHHHhhc
Confidence 78999999999998875 34433233333 46899999999999998876
No 50
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.52 E-value=5.8e-07 Score=99.66 Aligned_cols=163 Identities=13% Similarity=0.110 Sum_probs=91.5
Q ss_pred CcEEEEEcCCCCHHHHHHHHHHHH--------HcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEE
Q 003056 138 VDCCIGIPVYFTDLQRRAVIDAAT--------IAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVC 209 (852)
Q Consensus 138 ~~~VitVP~~f~~~qR~al~~Aa~--------~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvs 209 (852)
.-.+||.....-.+-++.+..+.. .||+++-.++. |.|++.+-. .. + ....++++|||||||+++
T Consensus 89 ~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avL-se-E----ke~gVa~IDIGgGTT~ia 161 (475)
T PRK10719 89 GAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTL-SE-E----RNTRVLNIDIGGGTANYA 161 (475)
T ss_pred cEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHh-hh-h----ccCceEEEEeCCCceEEE
Confidence 346778776554444443333211 26777777766 888776543 22 1 467899999999999999
Q ss_pred EEEeeCCeEEEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEeccc
Q 003056 210 IAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLM 289 (852)
Q Consensus 210 iv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~ 289 (852)
++.-. . ++.+. ...+||+.++.. -+ ..+ ..-.|. ..+|.+ .+-..++
T Consensus 162 Vf~~G--~--l~~T~-~l~vGG~~IT~D-~~---------~~i-~yis~~-~~~l~~---~~~~~~~------------- 208 (475)
T PRK10719 162 LFDAG--K--VIDTA-CLNVGGRLIETD-SQ---------GRV-TYISPP-GQMILD---ELGLAIT------------- 208 (475)
T ss_pred EEECC--E--EEEEE-EEecccceEEEC-CC---------CCE-EEEChH-HHHHHH---HcCCCcc-------------
Confidence 96544 2 44443 678999987543 11 000 011111 112211 1111111
Q ss_pred CCcceEEEecHHHHHHHHHHHHHHHHHHHHH-------HHHHc-CCC-CCCccEEEEeCCCCCh
Q 003056 290 EEKDVRGFIKRDEFEQISAPILERVKRPLEK-------ALAET-GLS-VEDVHMVEVVGSSSRV 344 (852)
Q Consensus 290 ~~~d~~~~itr~efe~l~~~~~~~i~~~i~~-------~l~~a-~~~-~~~I~~ViLvGG~sri 344 (852)
.--.++.+++..+|+.+.+-+.+.|.. .|-.. .++ ...++.|.+.||-+..
T Consensus 209 ----~G~~~~~~~L~~i~~~Ma~~l~~~i~~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGVad~ 268 (475)
T PRK10719 209 ----DGRSLTGEQLQQVTRRMAELLVEVIGGALSPLAQALMTTKLLPAGVPPEIITFSGGVGDC 268 (475)
T ss_pred ----ccccCCHHHHHHHHHHHHHHHHHHhCCCCChhHHhhccCCCCCCCCCCCEEEEecchHhh
Confidence 112456788888888777666666541 11111 222 3568999999998754
No 51
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.50 E-value=3e-06 Score=95.79 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=69.7
Q ss_pred cCcEEEEEcCCCCHHHHHHHHHH-HHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeC
Q 003056 137 VVDCCIGIPVYFTDLQRRAVIDA-ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK 215 (852)
Q Consensus 137 ~~~~VitVP~~f~~~qR~al~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~ 215 (852)
-..+++|-|..+...+|..+.+. ++...++.+.+...+.+++++.+ .. ..+.+|+|+|.+.|+|+=|- +
T Consensus 106 ~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g--~~------~~~g~ViD~G~~~t~v~PV~-D- 175 (444)
T COG5277 106 EHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASG--SS------DETGLVIDSGDSVTHVIPVV-D- 175 (444)
T ss_pred CCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcC--CC------CCceEEEEcCCCceeeEeee-c-
Confidence 34699999999999998776665 46666666666666666654443 21 24789999999999988652 2
Q ss_pred CeEEEEEEeCCCCcccHHHHHHHHHHHHHH
Q 003056 216 GQLKILGHSFDRSVGGRDFDEVLFQHFAAK 245 (852)
Q Consensus 216 ~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~ 245 (852)
| +.+.....-..+||++++..|.+.|...
T Consensus 176 G-~~l~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 176 G-IVLPKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred c-ccccccceeeecCcHHHHHHHHHHHhhc
Confidence 2 2222233346799999999999988874
No 52
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.46 E-value=7.1e-05 Score=79.26 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=41.8
Q ss_pred cEEEEeCCCCChHHHHHHHHhhcCCCCc-ccCCchhHHHhhHHHhhhh
Q 003056 333 HMVEVVGSSSRVPAIIKILTEFFGKEPR-RTMNASECVARGCALQCAI 379 (852)
Q Consensus 333 ~~ViLvGG~sriP~v~~~l~~~fg~~v~-~~~n~deava~GAa~~aa~ 379 (852)
..|+|+||.++.|.+++.+++.+|.++. .+.+|..+.|+|||++|.-
T Consensus 241 ~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 241 EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 4589999999999999999999998776 5678999999999999853
No 53
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.45 E-value=5.5e-05 Score=90.72 Aligned_cols=330 Identities=18% Similarity=0.254 Sum_probs=181.0
Q ss_pred eecHhhHhhhhc----CCcchHHHHHHhhCCC--------CCCHHHH--Hh--hccCCceEeeCCCCceEEEE-EEcC--
Q 003056 47 FIGTAGAASSTM----NPKNSISQIKRLIGRQ--------FSDPELQ--RD--LKSLPFAVTEGPDGYPLIHA-RYLG-- 107 (852)
Q Consensus 47 ~~G~~A~~~~~~----~p~~~~~~~k~llG~~--------~~~~~v~--~~--~~~~~~~~~~~~~g~~~~~v-~~~~-- 107 (852)
-||.+|..++.. .....+...||+|.-. |+..... .+ ....|+...-+++|.+.+.+ ....
T Consensus 331 RVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r~ 410 (1002)
T PF07520_consen 331 RVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDERL 410 (1002)
T ss_pred eecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCccccC
Confidence 489888876642 2334467778887522 2211110 00 00112211122355554443 1111
Q ss_pred --ceeeecHHHHHHHHHHHHHHHHHHhcCC--------------CcCcEEEEEcCCCCHHHHHHHHHHHHHc--------
Q 003056 108 --ETRVFTPTQVLGMLLSNLKAIAESNLNA--------------AVVDCCIGIPVYFTDLQRRAVIDAATIA-------- 163 (852)
Q Consensus 108 --~~~~~~~eel~a~~L~~l~~~a~~~~~~--------------~~~~~VitVP~~f~~~qR~al~~Aa~~A-------- 163 (852)
-...||=.-+..++|..+.-.|-.+.+. ....+++|||+-....+|+.++..++.|
T Consensus 411 pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~l 490 (1002)
T PF07520_consen 411 PVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKAL 490 (1002)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 1134666677777777777666544432 3568999999999999999988887755
Q ss_pred CCc---------------------ceeeechhHHHHHHhhh------------------hcCCCC------CCCCceEEE
Q 003056 164 GLH---------------------PLRLFHETTATALAYGI------------------YKTDLP------ENDQLNVAF 198 (852)
Q Consensus 164 Gl~---------------------~~~li~Ep~AAAl~y~~------------------~~~~~~------~~~~~~vlv 198 (852)
|+. +.-=-+|.||.=+=|.. .+.+-. ....-.|.-
T Consensus 491 Gw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriAS 570 (1002)
T PF07520_consen 491 GWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIAS 570 (1002)
T ss_pred CCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEE
Confidence 432 00112444443332211 111111 112345889
Q ss_pred EEeCCceeEEEEEEee----CC-eEEEEEE---eCCCCcccHHHHHHHHH-HHHHHHHhhh---ccc-c--------c-C
Q 003056 199 VDIGHASLQVCIAGFK----KG-QLKILGH---SFDRSVGGRDFDEVLFQ-HFAAKFKEEY---KID-V--------S-Q 256 (852)
Q Consensus 199 ~D~GggT~dvsiv~~~----~~-~~~vl~~---~~d~~lGG~~~D~~l~~-~l~~~~~~k~---~~~-~--------~-~ 256 (852)
+||||||||+.|-.+. .| ...+.-. .-+..+.|+||-..+++ ++...+.+.. ++. . . +
T Consensus 571 IDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~d 650 (1002)
T PF07520_consen 571 IDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGD 650 (1002)
T ss_pred EecCCCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCc
Confidence 9999999999998887 22 2222111 12456899998887664 5555544321 110 0 0 0
Q ss_pred CH----H-------------HHHHHHHHHHHhhh-------------hcC-CCCcccE------EEec------ccCCcc
Q 003056 257 NA----R-------------ASLRLRVACEKLKK-------------VLS-ANPEAPL------NIEC------LMEEKD 293 (852)
Q Consensus 257 ~~----~-------------~~~rL~~~aek~K~-------------~LS-~~~~~~i------~ie~------l~~~~d 293 (852)
+. + ...+++.++|..=. .|. ......+ .+.. -++=.|
T Consensus 651 g~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdild 730 (1002)
T PF07520_consen 651 GQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPLDPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDILD 730 (1002)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcceec
Confidence 00 0 01345566665321 111 0000000 0000 011124
Q ss_pred eEEEecHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCc----------
Q 003056 294 VRGFIKRDEFEQISA---PILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPR---------- 360 (852)
Q Consensus 294 ~~~~itr~efe~l~~---~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~---------- 360 (852)
+.+.|....+...+. -.+..+...+-+++..-+ .|-++|+|--||+|.||.++.+....++.
T Consensus 731 v~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~t 805 (1002)
T PF07520_consen 731 VPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYRT 805 (1002)
T ss_pred ceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCeee
Confidence 567899999888774 455555555556665543 57899999999999999999999864431
Q ss_pred ----------ccCCchhHHHhhHHHhhhhhc
Q 003056 361 ----------RTMNASECVARGCALQCAILS 381 (852)
Q Consensus 361 ----------~~~n~deava~GAa~~aa~ls 381 (852)
+--||-..||.||.++.....
T Consensus 806 g~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 806 GNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred cccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 223899999999987765444
No 54
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.35 E-value=8.3e-05 Score=81.77 Aligned_cols=46 Identities=26% Similarity=0.295 Sum_probs=43.2
Q ss_pred cEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhh
Q 003056 333 HMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCA 378 (852)
Q Consensus 333 ~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa 378 (852)
+.|+++||.++.+.+.+.+++.+|.++..+.+|..+.|+|||++|.
T Consensus 357 ~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 4599999999999999999999999999999999999999999874
No 55
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.30 E-value=0.00011 Score=78.77 Aligned_cols=178 Identities=18% Similarity=0.210 Sum_probs=99.9
Q ss_pred eeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHHHHHHHHHh
Q 003056 169 RLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKE 248 (852)
Q Consensus 169 ~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~ 248 (852)
..++|-+|-+.+..... | ..-.|+|+||--.-+. .+.+|.+.-..-..-+.-|.-.|-+.+++.
T Consensus 211 ~~~~Ei~ah~kgA~~f~---p----~~dtIiDIGGQD~K~i--~i~dG~v~df~mN~~CAAGtGrFLE~~A~~------- 274 (396)
T COG1924 211 KVVVEISAHAKGARYFA---P----DVDTVIDIGGQDSKVI--KLEDGKVDDFTMNDKCAAGTGRFLEVIARR------- 274 (396)
T ss_pred cceeeeehhHHHHHHhC---C----CCcEEEEecCcceeEE--EEeCCeeeeeEeccccccccchHHHHHHHH-------
Confidence 45667666555433221 1 1227999999755554 455776554444323333433443444333
Q ss_pred hhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEec-ccCCcceEEEecHHHHHHHHHHHHHHHHHHHHH-HHHHcC
Q 003056 249 EYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIEC-LMEEKDVRGFIKRDEFEQISAPILERVKRPLEK-ALAETG 326 (852)
Q Consensus 249 k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~-l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~-~l~~a~ 326 (852)
.++++.+ |-+.|.+.+..-.-++...+..++ +.. -..--. ..|+++..+...+..-+-. +++.-.
T Consensus 275 -Lgv~v~E-------~~~~A~~~~~~v~i~S~CaVF~eSevi~--~~~~G~---~~EdI~AGl~~Sv~~~v~~~~~~~~~ 341 (396)
T COG1924 275 -LGVDVEE-------LGKLALKATPPVKINSRCAVFAESEVIS--ALAEGA---SPEDILAGLAYSVAENVAEKVIKRVD 341 (396)
T ss_pred -hCCCHHH-------HHHHHhcCCCCcccCCeeEEEehHHHHH--HHHcCC---CHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 2333322 334444444322222222222221 000 000011 2355666666555444433 555433
Q ss_pred CCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhh
Q 003056 327 LSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAI 379 (852)
Q Consensus 327 ~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ 379 (852)
+. +. |+|+||.+....+.+.+++.+|.++..+.+|...-|+|||+++..
T Consensus 342 i~--~~--iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 342 IE--EP--IVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred CC--CC--EEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 32 22 999999999999999999999999999999999999999999853
No 56
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.11 E-value=0.00017 Score=78.40 Aligned_cols=177 Identities=12% Similarity=0.095 Sum_probs=96.2
Q ss_pred eeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEee-CCeEEEEEEeCCCCcccHHHHHHHHHHHHHHHH
Q 003056 169 RLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFK-KGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFK 247 (852)
Q Consensus 169 ~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~-~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~ 247 (852)
.+++|.+|-|....+.. +..-.|+|+||--+-+ +.+. +|.+.-.....-+.-|.-.|=+.+++.
T Consensus 249 ~vitEItcHA~GA~~l~-------P~vrTIIDIGGQDsK~--I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~------ 313 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMY-------PGTRTVLDIGGQDTKG--IQIDDHGIVENFQMNDRCAAGCGRYLGYIADE------ 313 (432)
T ss_pred ceeeeHHHHHHHHHHHC-------CCCCEEEEeCCCceEE--EEEcCCCcEeeeeecCcccccchHHHHHHHHH------
Confidence 46699998876543321 2344789999987664 5554 354432222222333444444444433
Q ss_pred hhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHc-C
Q 003056 248 EEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAET-G 326 (852)
Q Consensus 248 ~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a-~ 326 (852)
.++++.+ |-..+.+.+....-++...+.-++-.-. -+.--++|++ ++..+...+..-+...+.+. +
T Consensus 314 --Lgi~leE-------l~~lA~~a~~pv~ISS~CtVFAESEVIs-lla~G~~reD---IaAGL~~SIA~Rv~s~l~r~~~ 380 (432)
T TIGR02259 314 --MNMGLHE-------LGPLAMKSSKPARINSTCTVFAGAELRD-RLALGDKRED---ILAGLHRAIILRAISIISRSGG 380 (432)
T ss_pred --cCCCHHH-------HHHHHhcCCCCCCcCCcceEEehHHHHH-HHHCCCCHHH---HHHHHHHHHHHHHHHHHhcccC
Confidence 2333311 2233444444333333333333320000 0111244444 33333333333333333332 2
Q ss_pred CCCCCccEEEEeCCCCChHHHHHHHHhhcC-----CCCcccCCchhHHHhhHHHhh
Q 003056 327 LSVEDVHMVEVVGSSSRVPAIIKILTEFFG-----KEPRRTMNASECVARGCALQC 377 (852)
Q Consensus 327 ~~~~~I~~ViLvGG~sriP~v~~~l~~~fg-----~~v~~~~n~deava~GAa~~a 377 (852)
+ -..|+|+||.++.+.+.+.|++.++ .++..+.+|..+.|+|||++|
T Consensus 381 i----~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 I----TDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred C----CCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 1 2469999999999999999999994 557778899999999999875
No 57
>PRK10331 L-fuculokinase; Provisional
Probab=98.10 E-value=0.00032 Score=81.44 Aligned_cols=84 Identities=19% Similarity=0.179 Sum_probs=56.9
Q ss_pred EecHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHH
Q 003056 297 FIKRDEFEQISAP-ILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCAL 375 (852)
Q Consensus 297 ~itr~efe~l~~~-~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~ 375 (852)
.-+|.+|-+.+-+ +.-.+...++ .|++.+ ...++.|.++||+++.+.+.+++.+.||.++...- ..|++++|||+
T Consensus 357 ~~~~~~l~rAvlEgia~~~~~~~~-~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~a~GaA~ 432 (470)
T PRK10331 357 NTTRGHFYRAALEGLTAQLKRNLQ-VLEKIG--HFKASELLLVGGGSRNALWNQIKANMLDIPIKVLD-DAETTVAGAAM 432 (470)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHH-HHHHhc--CCCCceEEEEcccccCHHHHHHHHHhcCCeeEecC-cccchHHHHHH
Confidence 3466665444333 2223323333 334332 22478999999999999999999999999885554 45788999999
Q ss_pred hhhhhcCCC
Q 003056 376 QCAILSPTF 384 (852)
Q Consensus 376 ~aa~ls~~~ 384 (852)
.|+.-.+.+
T Consensus 433 la~~~~G~~ 441 (470)
T PRK10331 433 FGWYGVGEF 441 (470)
T ss_pred HHHHhcCCC
Confidence 998765543
No 58
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=98.09 E-value=0.00011 Score=85.95 Aligned_cols=82 Identities=22% Similarity=0.134 Sum_probs=53.4
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHh
Q 003056 297 FIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQ 376 (852)
Q Consensus 297 ~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~ 376 (852)
..+|.+|-+.+-+-+--.....-+.|.+. ....++.|.++||++|.+.+.+++.+.||.++... ...|+.+.|+|++
T Consensus 369 ~~~~~~l~ravlEgva~~l~~~~~~l~~~--~g~~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~-~~~e~~a~g~A~~ 445 (502)
T COG1070 369 PHTRAHLARAVLEGVAFALADGLEALEEL--GGKPPSRVRVVGGGARSPLWLQILADALGLPVVVP-EVEEAGALGGAAL 445 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCccEEEEECCcccCHHHHHHHHHHcCCeeEec-CcccchHHHHHHH
Confidence 34676666555444433333434445543 12346789999999999999999999999988654 3445555555555
Q ss_pred hhhhc
Q 003056 377 CAILS 381 (852)
Q Consensus 377 aa~ls 381 (852)
++...
T Consensus 446 ~~~~~ 450 (502)
T COG1070 446 AAAAL 450 (502)
T ss_pred HHHHh
Confidence 55443
No 59
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=98.02 E-value=0.00036 Score=80.86 Aligned_cols=85 Identities=13% Similarity=0.026 Sum_probs=58.6
Q ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHH
Q 003056 296 GFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCAL 375 (852)
Q Consensus 296 ~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~ 375 (852)
..-+|.+|-+.+-+-+--....+-+.+++.+. ..++.|.++||+++.|.+.+++.+.||.++...-+ .++.++|||+
T Consensus 360 ~~~~~~~l~rAvlEgia~~~r~~~e~l~~~~~--~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~-~e~~~lGaA~ 436 (465)
T TIGR02628 360 LNTTRGHIYRAALEGLTAQLKRNLQMLEQIGQ--FKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDD-AETTVAGAAM 436 (465)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceEEEecCccCCHHHHHHhhhhcCCeeEeccC-CcchHHHHHH
Confidence 34466665554444333333333344554431 24788999999999999999999999998865544 5788999999
Q ss_pred hhhhhcCC
Q 003056 376 QCAILSPT 383 (852)
Q Consensus 376 ~aa~ls~~ 383 (852)
.|+.-.+.
T Consensus 437 ~a~~a~G~ 444 (465)
T TIGR02628 437 FGFYGVGE 444 (465)
T ss_pred HHHHhcCc
Confidence 99865543
No 60
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.91 E-value=0.0023 Score=67.08 Aligned_cols=44 Identities=18% Similarity=0.134 Sum_probs=37.4
Q ss_pred EEEEeCCCCChHHHHHHHHhhcC-CC----CcccCCchhHHHhhHHHhh
Q 003056 334 MVEVVGSSSRVPAIIKILTEFFG-KE----PRRTMNASECVARGCALQC 377 (852)
Q Consensus 334 ~ViLvGG~sriP~v~~~l~~~fg-~~----v~~~~n~deava~GAa~~a 377 (852)
.|+|+||.++.+.+.+.|++.++ .. +..+.+|+.+.|+|||++|
T Consensus 214 ~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 214 TVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 59999999999999999999884 22 4456688999999999875
No 61
>PRK13317 pantothenate kinase; Provisional
Probab=97.86 E-value=0.0039 Score=66.55 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=42.0
Q ss_pred CccEEEEeC-CCCChHHHHHHHHhhc---CCCCcccCCchhHHHhhHHHhhh
Q 003056 331 DVHMVEVVG-SSSRVPAIIKILTEFF---GKEPRRTMNASECVARGCALQCA 378 (852)
Q Consensus 331 ~I~~ViLvG-G~sriP~v~~~l~~~f---g~~v~~~~n~deava~GAa~~aa 378 (852)
.+..|+++| |.++.|.+++.+.+++ +.++..+.||..+.|+|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 456899999 7999999999999988 56777888999999999999875
No 62
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=97.82 E-value=0.0028 Score=74.36 Aligned_cols=81 Identities=10% Similarity=0.121 Sum_probs=56.2
Q ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhh
Q 003056 299 KRDEFEQIS-APILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQC 377 (852)
Q Consensus 299 tr~efe~l~-~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~a 377 (852)
+|.+|-..+ +.+.-.+...+..+.+..+. .++.|.++||+++.+.+.+++.+.||.++...- ..++.++|||+.|
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~~~~~~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~-~~e~~a~GaA~la 446 (505)
T TIGR01314 371 KKEHMIRAALEGVIYNLYTVALALVEVMGD---PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPE-SYESSCLGACILG 446 (505)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecCcccCHHHHHHHHHHcCCeeEecC-CCCcchHHHHHHH
Confidence 455544332 23333334444444343443 478999999999999999999999999886554 4468899999999
Q ss_pred hhhcCC
Q 003056 378 AILSPT 383 (852)
Q Consensus 378 a~ls~~ 383 (852)
+.-.+.
T Consensus 447 ~~~~G~ 452 (505)
T TIGR01314 447 LKALGL 452 (505)
T ss_pred HHhcCc
Confidence 866554
No 63
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.81 E-value=0.00063 Score=75.94 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=52.8
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHcCCcceee---echhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCC
Q 003056 140 CCIGIPVYFTDLQRRAVIDAATIAGLHPLRL---FHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKG 216 (852)
Q Consensus 140 ~VitVP~~f~~~qR~al~~Aa~~AGl~~~~l---i~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~ 216 (852)
++||==+--..+.|..+..-+..||==|+.- --|..=|+-.-|... +.......|+-+|+||||+.+++++-.
T Consensus 88 VIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~--~S~~~~~~V~NiDIGGGTtN~avf~~G-- 163 (473)
T PF06277_consen 88 VIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAA--LSKEHHTVVANIDIGGGTTNIAVFDNG-- 163 (473)
T ss_pred EEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHH--HhhhhCCeEEEEEeCCCceeEEEEECC--
Confidence 4566555555677777777777777433221 123332322221111 111236789999999999999997655
Q ss_pred eEEEEEEeCCCCcccHHH
Q 003056 217 QLKILGHSFDRSVGGRDF 234 (852)
Q Consensus 217 ~~~vl~~~~d~~lGG~~~ 234 (852)
+++++. ..++||+-|
T Consensus 164 --~v~~T~-cl~IGGRLi 178 (473)
T PF06277_consen 164 --EVIDTA-CLDIGGRLI 178 (473)
T ss_pred --EEEEEE-EEeeccEEE
Confidence 466665 468999855
No 64
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.65 E-value=0.004 Score=70.61 Aligned_cols=85 Identities=14% Similarity=0.114 Sum_probs=53.0
Q ss_pred eEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCC--------------
Q 003056 294 VRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEP-------------- 359 (852)
Q Consensus 294 ~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v-------------- 359 (852)
+.+.|.-.++++.+-..--.|...++.+.+.. +.-+-|-++|+|--+|+|.||..+......++
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaI--n~y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~W 820 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAI--NHYDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGTW 820 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHH--hhhcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceeccce
Confidence 34456666666554332112333333333332 22356789999999999999999998865332
Q ss_pred ------cccCCchhHHHhhHHHhhhhh
Q 003056 360 ------RRTMNASECVARGCALQCAIL 380 (852)
Q Consensus 360 ------~~~~n~deava~GAa~~aa~l 380 (852)
.+--||...+|.||-+++..+
T Consensus 821 YPF~k~grIddPKtTAaVGAMLC~Lsl 847 (1014)
T COG4457 821 YPFRKQGRIDDPKTTAAVGAMLCALSL 847 (1014)
T ss_pred ecccccCcCCCcchHHHHHHHHHHHHh
Confidence 122378889999998776543
No 65
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=97.59 E-value=0.0013 Score=67.73 Aligned_cols=189 Identities=18% Similarity=0.170 Sum_probs=95.3
Q ss_pred HHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHH
Q 003056 161 TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQ 240 (852)
Q Consensus 161 ~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~ 240 (852)
+..|.++.-.=-|+.+|.+....... .+....++||||||||.+++.-.+ .+.-+.-+ -.|+.++..|..
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTPG-----t~~PlaIlDmG~GSTDAsii~~~g-~v~~iHlA----GAG~mVTmlI~s 175 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTPG-----TDKPLAILDMGGGSTDASIINRDG-EVTAIHLA----GAGNMVTMLINS 175 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTSTT-------SSEEEEEE-SSEEEEEEE-TTS--EEEEEEE-----SHHHHHHHHHH
T ss_pred HHHCCceEEccccHHHHHhcccCCCC-----CCCCeEEEecCCCcccHHHhCCCC-cEEEEEec----CCchhhHHHHHH
Confidence 45688877777899998876643221 356799999999999999987665 23222222 346666665543
Q ss_pred HHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEe-----------c-----------ccCCc--ceEE
Q 003056 241 HFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIE-----------C-----------LMEEK--DVRG 296 (852)
Q Consensus 241 ~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie-----------~-----------l~~~~--d~~~ 296 (852)
. .+++- +.-||.+|+-=-+.-+..+++. . +-++. .+..
T Consensus 176 E--------LGl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~ 237 (332)
T PF08841_consen 176 E--------LGLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPG 237 (332)
T ss_dssp H--------CT-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESS
T ss_pred h--------hCCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCC
Confidence 2 12211 1344555542111111111110 0 00110 1112
Q ss_pred EecHHHHHHHHHHHHHH-HHHHHHHHHHHc--CCCCCCccEEEEeCCCCChHHHHHHHHhhcC--------CCCcccCCc
Q 003056 297 FIKRDEFEQISAPILER-VKRPLEKALAET--GLSVEDVHMVEVVGSSSRVPAIIKILTEFFG--------KEPRRTMNA 365 (852)
Q Consensus 297 ~itr~efe~l~~~~~~~-i~~~i~~~l~~a--~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg--------~~v~~~~n~ 365 (852)
.++-+.+..+=...-++ +..-.-++|++. .-...+|+.|+|||||+.=.-|-+++.+.+. -++.-.--|
T Consensus 238 ~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGP 317 (332)
T PF08841_consen 238 DLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGP 317 (332)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTT
T ss_pred CccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCc
Confidence 23333333332222222 123344555543 2245689999999999985555566666552 245555678
Q ss_pred hhHHHhhHHHhh
Q 003056 366 SECVARGCALQC 377 (852)
Q Consensus 366 deava~GAa~~a 377 (852)
..|||.|.++..
T Consensus 318 RNAVATGLvlsy 329 (332)
T PF08841_consen 318 RNAVATGLVLSY 329 (332)
T ss_dssp STHHHHHHHHHH
T ss_pred hHHHHHHHHHhh
Confidence 999999998753
No 66
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=97.56 E-value=0.00079 Score=73.77 Aligned_cols=91 Identities=16% Similarity=0.184 Sum_probs=60.0
Q ss_pred CcEEEEEcCCCCHHHHHHHHHHH-HHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEE-EEEeeC
Q 003056 138 VDCCIGIPVYFTDLQRRAVIDAA-TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVC-IAGFKK 215 (852)
Q Consensus 138 ~~~VitVP~~f~~~qR~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvs-iv~~~~ 215 (852)
.-+++|-|..+...-|+.|.+.. +..+.+-+.+ ..-| .+ |+.. ..+-+|+|+|.|-+++. |++-
T Consensus 100 ~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv--a~qa-vl-ya~g--------~ttG~VvD~G~gvt~~vPI~eG-- 165 (372)
T KOG0676|consen 100 HPVLLTEPPLNPKANREKLTQIMFETFNVPALYV--AIQA-VL-YASG--------RTTGLVVDSGDGVTHVVPIYEG-- 165 (372)
T ss_pred CceEeecCCCCchHhHHHHHHHhhhhcCccHhHH--HHHH-HH-HHcC--------CeeEEEEEcCCCceeeeecccc--
Confidence 46999999999999998887764 4444443333 2233 22 5542 24679999999977644 4322
Q ss_pred CeEEEEEEeCCCCcccHHHHHHHHHHHHH
Q 003056 216 GQLKILGHSFDRSVGGRDFDEVLFQHFAA 244 (852)
Q Consensus 216 ~~~~vl~~~~d~~lGG~~~D~~l~~~l~~ 244 (852)
+.+...-....+||++++..|...|.+
T Consensus 166 --~~lp~ai~~ldl~G~dlt~~l~~~L~~ 192 (372)
T KOG0676|consen 166 --YALPHAILRLDLAGRDLTDYLLKQLRK 192 (372)
T ss_pred --cccchhhheecccchhhHHHHHHHHHh
Confidence 223333445679999999987777765
No 67
>PRK15027 xylulokinase; Provisional
Probab=97.07 E-value=0.018 Score=67.15 Aligned_cols=85 Identities=13% Similarity=0.087 Sum_probs=61.6
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHh
Q 003056 297 FIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQ 376 (852)
Q Consensus 297 ~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~ 376 (852)
..+|.+|-+.+-+-+--....+-+.++..+. .++.|+++||+++.+.+.+++.+.||.++....+.+++.++|||+.
T Consensus 355 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~l 431 (484)
T PRK15027 355 QHGPNELARAVLEGVGYALADGMDVVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARL 431 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHH
Confidence 3467776655444333333333344555453 4788999999999999999999999999866666777889999999
Q ss_pred hhhhcCCC
Q 003056 377 CAILSPTF 384 (852)
Q Consensus 377 aa~ls~~~ 384 (852)
|+.-.+.+
T Consensus 432 A~~~~G~~ 439 (484)
T PRK15027 432 AQIAANPE 439 (484)
T ss_pred HHHhcCCc
Confidence 98765543
No 68
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=96.87 E-value=0.0076 Score=66.75 Aligned_cols=122 Identities=13% Similarity=0.174 Sum_probs=85.2
Q ss_pred eeecHHHHHHHHHHHHHHHHHHhcCCCc-----CcEEEEEcCCCCHHHHHHHHHH-HHHcCCcceeeechhHHHHHHhhh
Q 003056 110 RVFTPTQVLGMLLSNLKAIAESNLNAAV-----VDCCIGIPVYFTDLQRRAVIDA-ATIAGLHPLRLFHETTATALAYGI 183 (852)
Q Consensus 110 ~~~~~eel~a~~L~~l~~~a~~~~~~~~-----~~~VitVP~~f~~~qR~al~~A-a~~AGl~~~~li~Ep~AAAl~y~~ 183 (852)
..+|..++++.+-+-+.-.....++.+. ..+|+-||-.|....-+.+... ....||+-..++.|+.|+.+..|+
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 4566667666554444333344555443 3689999999998776555544 567899999999999999866654
Q ss_pred hcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHHHHHH
Q 003056 184 YKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAA 244 (852)
Q Consensus 184 ~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~ 244 (852)
..-.|||||+-+|.|+.|+-. +.+..+.--...||.||++.|+-++.+
T Consensus 275 ----------ss~CVVdiGAQkTsIaCVEdG---vs~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 275 ----------SSACVVDIGAQKTSIACVEDG---VSLPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred ----------cceeEEEccCcceeEEEeecC---ccccCceEEeccCCchHHHHHHHHHHh
Confidence 246799999999999887543 223333334568999999999876654
No 69
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.70 E-value=0.11 Score=58.82 Aligned_cols=214 Identities=13% Similarity=0.149 Sum_probs=121.1
Q ss_pred HHHHHHHHcCCc----ceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeC---C----eEEEEEE
Q 003056 155 AVIDAATIAGLH----PLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK---G----QLKILGH 223 (852)
Q Consensus 155 al~~Aa~~AGl~----~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~---~----~~~vl~~ 223 (852)
.+.++|+..||. |..-+-+.-|.+++-+.- ..+-|++=+|-+||.+.+-.-.. | ....+--
T Consensus 233 Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~--------~~~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~P 304 (544)
T COG1069 233 LTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGA--------QPGSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLP 304 (544)
T ss_pred cCHHHHHHhCCCCCcEEeccceeccccccccccC--------CCCeEEEEeccceEEEEecCCceecCccccccccccCc
Confidence 456788889987 222233444444433211 12345555888888887754431 1 1112222
Q ss_pred eCCCCcccHHHHHHHHHHHHHHHHh---------hhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccC----
Q 003056 224 SFDRSVGGRDFDEVLFQHFAAKFKE---------EYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLME---- 290 (852)
Q Consensus 224 ~~d~~lGG~~~D~~l~~~l~~~~~~---------k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~---- 290 (852)
++-..=||..-.-.|.+||.+.... +++..+. .....++..-+++.+...+.... .+-++.+..
T Consensus 305 g~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~l~~~-l~~l~~f~GNRsP 381 (544)
T COG1069 305 GLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIY--ESLAQRLELLTEAAAAIPPLASG-LHVLDWFNGNRSP 381 (544)
T ss_pred chhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHH--HHHHHHHHHHHhhHhccCcccCC-cEecccccCCcCC
Confidence 2223457888888888888876311 1111111 12334455555666555432221 111221111
Q ss_pred --Ccc-------eEEEecHHHHHHHHHHHHHHH---HHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCC
Q 003056 291 --EKD-------VRGFIKRDEFEQISAPILERV---KRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKE 358 (852)
Q Consensus 291 --~~d-------~~~~itr~efe~l~~~~~~~i---~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~ 358 (852)
|-+ +++.-+.+.+-.+..-++.-+ .+.|-+++++.|+ .|+.|.++||..+.|.+.+++.+..|.+
T Consensus 382 ~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~---~Id~l~~sGG~~KN~llmql~aDvtg~~ 458 (544)
T COG1069 382 LADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGI---AIDTLFASGGIRKNPLLMQLYADVTGRP 458 (544)
T ss_pred CCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCC---eeeEEEecCCcccCHHHHHHHHHhcCCe
Confidence 111 222333443333333333333 4455666677776 4899999999999999999999999987
Q ss_pred CcccCCchhHHHhhHHHhhhhhcCC
Q 003056 359 PRRTMNASECVARGCALQCAILSPT 383 (852)
Q Consensus 359 v~~~~n~deava~GAa~~aa~ls~~ 383 (852)
+... ..++++++|+|+.|+.-.+.
T Consensus 459 v~i~-~s~~a~llGsAm~~avAag~ 482 (544)
T COG1069 459 VVIP-ASDQAVLLGAAMFAAVAAGV 482 (544)
T ss_pred EEee-cccchhhhHHHHHHHHHhcc
Confidence 7555 78899999999999866543
No 70
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=96.66 E-value=0.028 Score=66.53 Aligned_cols=83 Identities=13% Similarity=0.178 Sum_probs=59.6
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCC-CChHHHHHHHHhhcCCCCcccCCchhHHHhhHHH
Q 003056 297 FIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSS-SRVPAIIKILTEFFGKEPRRTMNASECVARGCAL 375 (852)
Q Consensus 297 ~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~-sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~ 375 (852)
.-+|.+|-+.+-+-+--....+-+.|+..+. .++.|.++||+ ++.+.+.+++.+.||.++...-+ .|+.++|||+
T Consensus 404 ~~~~~~~~RAvlEgia~~~~~~l~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~-~e~~a~GaA~ 479 (536)
T TIGR01234 404 ATDAPLLYRALIEATAFGTRMIMETFTDSGV---PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVAS-DQAPALGAAI 479 (536)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhhCCeeEeccC-CcchhHHHHH
Confidence 4467766555544333333333444455554 47899999999 99999999999999998866655 4688999999
Q ss_pred hhhhhcCC
Q 003056 376 QCAILSPT 383 (852)
Q Consensus 376 ~aa~ls~~ 383 (852)
.|+.-.+.
T Consensus 480 lA~~~~G~ 487 (536)
T TIGR01234 480 FAAVAAGV 487 (536)
T ss_pred HHHHHcCC
Confidence 99876554
No 71
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.53 E-value=0.0029 Score=64.24 Aligned_cols=48 Identities=27% Similarity=0.454 Sum_probs=42.9
Q ss_pred CccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhh
Q 003056 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAI 379 (852)
Q Consensus 331 ~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ 379 (852)
.++.|+++||+++.+.+.+++.+.||.++...-+ .++.|+|||+.|+.
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 4899999999999999999999999988866544 89999999999874
No 72
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=96.24 E-value=0.033 Score=58.72 Aligned_cols=83 Identities=18% Similarity=0.137 Sum_probs=46.4
Q ss_pred EEEEEcCCCCHHHHHHHHHHHHHcCCccee--------eechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEE
Q 003056 140 CCIGIPVYFTDLQRRAVIDAATIAGLHPLR--------LFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIA 211 (852)
Q Consensus 140 ~VitVP~~f~~~qR~al~~Aa~~AGl~~~~--------li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv 211 (852)
++||=-.--..+.|..+...-..||==++. +|--.-|-|..| .......|+-+|+||||+..+++
T Consensus 90 vIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~-------Seqr~t~v~NlDIGGGTtN~slF 162 (473)
T COG4819 90 VIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTL-------SEQRLTRVLNLDIGGGTTNYSLF 162 (473)
T ss_pred EEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccch-------hhhhceEEEEEeccCCccceeee
Confidence 455555444556666665555555532222 222222222222 22235678999999999999995
Q ss_pred EeeCCeEEEEEEeCCCCcccHHH
Q 003056 212 GFKKGQLKILGHSFDRSVGGRDF 234 (852)
Q Consensus 212 ~~~~~~~~vl~~~~d~~lGG~~~ 234 (852)
.-. ++..+. ...+||+-+
T Consensus 163 D~G----kv~dTa-CLdiGGRLi 180 (473)
T COG4819 163 DAG----KVSDTA-CLDIGGRLI 180 (473)
T ss_pred ccc----ccccce-eeecCcEEE
Confidence 444 355554 356888744
No 73
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=96.16 E-value=0.86 Score=48.72 Aligned_cols=69 Identities=19% Similarity=0.173 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcC-----CCCcccCCchhHHHhhHHHhh
Q 003056 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFG-----KEPRRTMNASECVARGCALQC 377 (852)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg-----~~v~~~~n~deava~GAa~~a 377 (852)
++....+.+...+..++.+.+..... |+|+||..+...+++.+.+.+. .++.....|....+.||+++|
T Consensus 198 Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 198 ILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 44445555556666666655433222 9999999999877777755553 345567789999999999875
No 74
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=96.16 E-value=0.24 Score=52.33 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=58.4
Q ss_pred cCcEEEEEcCCCCH-HHHHHHHHHHHHcCCcceeeechhHHHHHHhhhhcCCCC---CCCCceEEEEEeCCceeEEEEEE
Q 003056 137 VVDCCIGIPVYFTD-LQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLP---ENDQLNVAFVDIGHASLQVCIAG 212 (852)
Q Consensus 137 ~~~~VitVP~~f~~-~qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~---~~~~~~vlv~D~GggT~dvsiv~ 212 (852)
-..+|+|=|.+--+ .|.....-..+.-++.- +..-+.|+.+++-.+..+.+ .....+.||+|-|.+-|-+.-+
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~--v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~- 169 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDA--VLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPV- 169 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccce--EeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehh-
Confidence 45789999986554 44444444456666654 34444444444431211111 1125689999999988775532
Q ss_pred eeCCeEEEEEEeCCCCcccHHHHHHHHHHHH
Q 003056 213 FKKGQLKILGHSFDRSVGGRDFDEVLFQHFA 243 (852)
Q Consensus 213 ~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~ 243 (852)
-.|.....+.. -..+||..++..|.+++.
T Consensus 170 -v~g~~~~qaV~-RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 170 -VKGIPYYQAVK-RIDVGGKALTNLLKETIS 198 (400)
T ss_pred -hcCcchhhceE-EeecchHHHHHHHHHHhh
Confidence 22222111221 356999999999988764
No 75
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=95.88 E-value=0.023 Score=67.27 Aligned_cols=86 Identities=12% Similarity=0.143 Sum_probs=62.1
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHh
Q 003056 297 FIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQ 376 (852)
Q Consensus 297 ~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~ 376 (852)
.-+|..+..++.-+++-+.-.+..+++...-....++.|.++||+++.+.+.+++.++||.++...- ..|+.++|||+.
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~~e~~alGaA~l 487 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPY-VNEAVLHGAAML 487 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecC-hhHHHHHHHHHH
Confidence 4467666666666666665555544443211112478899999999999999999999999886554 456889999999
Q ss_pred hhhhcCC
Q 003056 377 CAILSPT 383 (852)
Q Consensus 377 aa~ls~~ 383 (852)
|+.-.+.
T Consensus 488 A~~~~G~ 494 (541)
T TIGR01315 488 GAKAAGT 494 (541)
T ss_pred HHHhcCc
Confidence 9865543
No 76
>PLN02669 xylulokinase
Probab=95.73 E-value=0.025 Score=66.88 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=53.5
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhh
Q 003056 298 IKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQC 377 (852)
Q Consensus 298 itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~a 377 (852)
.+|.++ +..+++.+.--++..++..+.. ..++.|+++||+++.+.+.+++.+.||.++.+.-. .++.++|||+.|
T Consensus 416 ~~~~~~---~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~-~ea~alGAA~~A 490 (556)
T PLN02669 416 FDPPSE---VRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQR-PDSASLGAALRA 490 (556)
T ss_pred CCHHHH---HHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCC-CCchHHHHHHHH
Confidence 355553 3333333333333333333322 35789999999999999999999999998865544 478899999999
Q ss_pred hh
Q 003056 378 AI 379 (852)
Q Consensus 378 a~ 379 (852)
+.
T Consensus 491 ~~ 492 (556)
T PLN02669 491 AH 492 (556)
T ss_pred HH
Confidence 76
No 77
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=95.68 E-value=0.023 Score=52.74 Aligned_cols=48 Identities=27% Similarity=0.405 Sum_probs=27.9
Q ss_pred EEEEEeCCceeEEEEEEee-CCeEEEEEEeCCCCcc--cHHHH--HHHHHHHH
Q 003056 196 VAFVDIGHASLQVCIAGFK-KGQLKILGHSFDRSVG--GRDFD--EVLFQHFA 243 (852)
Q Consensus 196 vlv~D~GggT~dvsiv~~~-~~~~~vl~~~~d~~lG--G~~~D--~~l~~~l~ 243 (852)
|+++|+|++++.+.+++.. .+.+++++.+.....| |.+|. ..+.+-|.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~ 53 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIK 53 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHH
Confidence 6899999999999998884 3455666554332222 66666 55554443
No 78
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=95.66 E-value=0.12 Score=52.66 Aligned_cols=194 Identities=16% Similarity=0.183 Sum_probs=110.4
Q ss_pred cCcEEEEEcCCCCHHHHHHHHHH-HHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeC
Q 003056 137 VVDCCIGIPVYFTDLQRRAVIDA-ATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK 215 (852)
Q Consensus 137 ~~~~VitVP~~f~~~qR~al~~A-a~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~ 215 (852)
-..+.+|-|+-=....|+.|.+. .+.-||.-+.+-- .|+..-|+. .+ ..-+|+|-|-|-|-++-+.-.
T Consensus 101 ~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvai--QAVLtLYAQ---GL-----~tGvVvDSGDGVTHi~PVye~- 169 (389)
T KOG0677|consen 101 NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAI--QAVLTLYAQ---GL-----LTGVVVDSGDGVTHIVPVYEG- 169 (389)
T ss_pred cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehH--HHHHHHHHh---cc-----cceEEEecCCCeeEEeeeecc-
Confidence 34678999998888888877765 5777888655432 344334542 12 235899999999988765222
Q ss_pred CeEEEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCC-----------CcccEE
Q 003056 216 GQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSAN-----------PEAPLN 284 (852)
Q Consensus 216 ~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~-----------~~~~i~ 284 (852)
+..-.-..-..+.|+|+++-|++.|..+ -|..+-+.+ .+.....|+.|..- -++++-
T Consensus 170 --~~l~HLtrRldvAGRdiTryLi~LLl~r---GYafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETTvL 237 (389)
T KOG0677|consen 170 --FVLPHLTRRLDVAGRDITRYLIKLLLRR---GYAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETTVL 237 (389)
T ss_pred --eehhhhhhhccccchhHHHHHHHHHHhh---ccccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhheee
Confidence 1111112235689999999999988765 121111111 02223334333211 112222
Q ss_pred Ee--cccCCcceEEEecHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCCCC--CccEEEEeCCCCChHHHHHHHH
Q 003056 285 IE--CLMEEKDVRGFIKRDEFE---QISAPIL-----ERVKRPLEKALAETGLSVE--DVHMVEVVGSSSRVPAIIKILT 352 (852)
Q Consensus 285 ie--~l~~~~d~~~~itr~efe---~l~~~~~-----~~i~~~i~~~l~~a~~~~~--~I~~ViLvGG~sriP~v~~~l~ 352 (852)
++ .|.++.- +.+--+.|| .+++|-+ ..+.+++-.+++.+.++.. -..+|+|.||++.-|.+-.+|+
T Consensus 238 v~~YtLPDGRv--IkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLE 315 (389)
T KOG0677|consen 238 VESYTLPDGRV--IKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLE 315 (389)
T ss_pred eeeeecCCCcE--EEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHH
Confidence 22 2333433 334444454 4455432 2345566666776654422 2369999999999999887776
Q ss_pred hhc
Q 003056 353 EFF 355 (852)
Q Consensus 353 ~~f 355 (852)
+.+
T Consensus 316 kEl 318 (389)
T KOG0677|consen 316 KEL 318 (389)
T ss_pred HHH
Confidence 654
No 79
>PRK10854 exopolyphosphatase; Provisional
Probab=95.51 E-value=0.35 Score=56.79 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCCcceeeechhHHHHHHh-hhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccH
Q 003056 154 RAVIDAATIAGLHPLRLFHETTATALAY-GIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGR 232 (852)
Q Consensus 154 ~al~~Aa~~AGl~~~~li~Ep~AAAl~y-~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~ 232 (852)
..+..+-+..|+++ ++|+...=|.+.| |+.. .++. ....+|+|+|||+|.++++.- +.+....+ ..+|.-
T Consensus 100 ~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~-~l~~--~~~~lvvDIGGGStEl~~~~~--~~~~~~~S---~~lG~v 170 (513)
T PRK10854 100 DFLKRAEKVIPYPI-EIISGNEEARLIFMGVEH-TQPE--KGRKLVIDIGGGSTELVIGEN--FEPILVES---RRMGCV 170 (513)
T ss_pred HHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhc-ccCC--CCCeEEEEeCCCeEEEEEecC--CCeeEeEE---Eeccee
Confidence 33445556679987 6666665555555 4443 3332 356899999999999999653 32222211 256665
Q ss_pred HHHHH
Q 003056 233 DFDEV 237 (852)
Q Consensus 233 ~~D~~ 237 (852)
.+.+.
T Consensus 171 rl~e~ 175 (513)
T PRK10854 171 SFAQL 175 (513)
T ss_pred eHHhh
Confidence 55543
No 80
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.25 E-value=0.041 Score=64.45 Aligned_cols=81 Identities=15% Similarity=0.264 Sum_probs=55.9
Q ss_pred ecHHHHHHHH-HHHHHHHHHHHHHHHH-HcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHH
Q 003056 298 IKRDEFEQIS-APILERVKRPLEKALA-ETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCAL 375 (852)
Q Consensus 298 itr~efe~l~-~~~~~~i~~~i~~~l~-~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~ 375 (852)
-+|.++-+.+ +.+.-.+...+ +.|+ ..+. .++.|.++||+++.+.+.+++.+.||.++... +..|+.++|||+
T Consensus 372 ~~~~~l~rAvlEgia~~~r~~~-e~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~-~~~e~~a~GaA~ 446 (498)
T PRK00047 372 TTKEHIIRATLESIAYQTRDVL-DAMQADSGI---RLKELRVDGGAVANNFLMQFQADILGVPVERP-VVAETTALGAAY 446 (498)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CCceEEEecCcccCHHHHHHHHHhhCCeeEec-CcccchHHHHHH
Confidence 4455544333 23333334444 3333 2343 37889999999999999999999999988544 456788999999
Q ss_pred hhhhhcCC
Q 003056 376 QCAILSPT 383 (852)
Q Consensus 376 ~aa~ls~~ 383 (852)
.|+.-.+.
T Consensus 447 ~A~~~~G~ 454 (498)
T PRK00047 447 LAGLAVGF 454 (498)
T ss_pred HHhhhcCc
Confidence 99866554
No 81
>PLN02295 glycerol kinase
Probab=95.25 E-value=0.059 Score=63.35 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=44.8
Q ss_pred CccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhhhcCCC
Q 003056 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTF 384 (852)
Q Consensus 331 ~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ls~~~ 384 (852)
.++.|.++||+++.+.+.+++.+.||.++... +..|+.++|||+.|+.-.+.+
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~-~~~e~~alGaA~~A~~~~G~~ 464 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLLGSPVVRP-ADIETTALGAAYAAGLAVGLW 464 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhcCCceEec-CccccHHHHHHHHHHhhcCcC
Confidence 57889999999999999999999999988544 456788999999988665543
No 82
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.18 E-value=0.038 Score=64.64 Aligned_cols=82 Identities=15% Similarity=0.239 Sum_probs=56.9
Q ss_pred EecHHHHHHHHH-HHHHHHHHHHHHHHHHc-CCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHH
Q 003056 297 FIKRDEFEQISA-PILERVKRPLEKALAET-GLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCA 374 (852)
Q Consensus 297 ~itr~efe~l~~-~~~~~i~~~i~~~l~~a-~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa 374 (852)
.-+|.+|-+.+- .+.-.+...+ +.|+.. +. .++.|.++||++|.+.+.+++.+.||.++.. .+..|+.|+|||
T Consensus 367 ~~~~~~l~rAvlEgia~~~~~~~-~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~-~~~~e~~alGaA 441 (493)
T TIGR01311 367 GTTKAHIARAALEAIAFQTRDVL-EAMEKDAGV---EITKLRVDGGMTNNNLLMQFQADILGVPVVR-PKVTETTALGAA 441 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CCceEEEecccccCHHHHHHHHHhcCCeeEe-cCCCcchHHHHH
Confidence 345666554433 3333333333 333332 43 4788999999999999999999999998865 455678899999
Q ss_pred HhhhhhcCC
Q 003056 375 LQCAILSPT 383 (852)
Q Consensus 375 ~~aa~ls~~ 383 (852)
+.|+.-.+.
T Consensus 442 ~~a~~~~G~ 450 (493)
T TIGR01311 442 YAAGLAVGY 450 (493)
T ss_pred HHHHhhcCc
Confidence 998866544
No 83
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=95.12 E-value=0.077 Score=61.42 Aligned_cols=83 Identities=16% Similarity=0.086 Sum_probs=57.8
Q ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHH
Q 003056 297 FIKRDEFEQISAPILERVKRPLEKALAET-GLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCAL 375 (852)
Q Consensus 297 ~itr~efe~l~~~~~~~i~~~i~~~l~~a-~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~ 375 (852)
.-+|.++-+.+-+-+--....+-+.|++. +. .++.|.++||+++.+.+.+++.+.+|.++... . .|+.++|||+
T Consensus 355 ~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~-~-~e~~a~GaA~ 429 (454)
T TIGR02627 355 PESDAELARCIFDSLALLYRQVLLELAELRGK---PISQLHIVGGGSQNAFLNQLCADACGIRVIAG-P-VEASTLGNIG 429 (454)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CcCEEEEECChhhhHHHHHHHHHHhCCceEcC-C-chHHHHHHHH
Confidence 34677665544433332233333444442 43 47889999999999999999999999988543 3 6789999999
Q ss_pred hhhhhcCCC
Q 003056 376 QCAILSPTF 384 (852)
Q Consensus 376 ~aa~ls~~~ 384 (852)
.|+.-.+.+
T Consensus 430 ~a~~~~G~~ 438 (454)
T TIGR02627 430 VQLMALDEI 438 (454)
T ss_pred HHHHhcCCc
Confidence 998765543
No 84
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.12 E-value=0.49 Score=55.24 Aligned_cols=77 Identities=23% Similarity=0.244 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCCcceeeechhHHHHHHh-hhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCccc
Q 003056 153 RRAVIDAATIAGLHPLRLFHETTATALAY-GIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGG 231 (852)
Q Consensus 153 R~al~~Aa~~AGl~~~~li~Ep~AAAl~y-~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG 231 (852)
...+..+-+..|+++ ++|+...=|-+.| |+... ++. ....+|+|+|||+|.++++. ++.+. . .....+|.
T Consensus 94 ~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~-l~~--~~~~lviDIGGGStEl~~~~--~~~~~--~-~~Sl~lG~ 164 (496)
T PRK11031 94 DEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHT-TGG--ADQRLVVDIGGASTELVTGT--GAQAT--S-LFSLSMGC 164 (496)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhc-cCC--CCCEEEEEecCCeeeEEEec--CCcee--e-eeEEeccc
Confidence 344555566779987 5666555555554 55443 442 34689999999999999864 33331 1 22467888
Q ss_pred HHHHHHH
Q 003056 232 RDFDEVL 238 (852)
Q Consensus 232 ~~~D~~l 238 (852)
-.+.+.+
T Consensus 165 vrl~e~f 171 (496)
T PRK11031 165 VTWLERY 171 (496)
T ss_pred hHHHHHh
Confidence 7765544
No 85
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.08 E-value=0.054 Score=63.21 Aligned_cols=81 Identities=20% Similarity=0.358 Sum_probs=56.5
Q ss_pred ecHHHHHHHHH-HHHHHHHHHHHHHHHHc-CCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHH
Q 003056 298 IKRDEFEQISA-PILERVKRPLEKALAET-GLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCAL 375 (852)
Q Consensus 298 itr~efe~l~~-~~~~~i~~~i~~~l~~a-~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~ 375 (852)
.++.++-+.+- .+.-.+...++ .|++. +. .++.|.++||+++.+.+.+++.+.||.++... ...++.++|||+
T Consensus 359 ~~~~~l~railEgia~~~~~~~~-~l~~~~~~---~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~-~~~e~~a~GaA~ 433 (481)
T TIGR01312 359 TTRADLTRAVLEGVTFALRDSLD-ILREAGGI---PIQSIRLIGGGAKSPAWRQMLADIFGTPVDVP-EGEEGPALGAAI 433 (481)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHhcCC---CcceEEEeccccCCHHHHHHHHHHhCCceeec-CCCcchHHHHHH
Confidence 34555544332 33333333333 33432 33 47899999999999999999999999988655 466788999999
Q ss_pred hhhhhcCC
Q 003056 376 QCAILSPT 383 (852)
Q Consensus 376 ~aa~ls~~ 383 (852)
.|+.-.+.
T Consensus 434 ~a~~~~g~ 441 (481)
T TIGR01312 434 LAAWALGE 441 (481)
T ss_pred HHHHhcCC
Confidence 99876554
No 86
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=95.06 E-value=0.91 Score=51.17 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=39.9
Q ss_pred cceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHH
Q 003056 292 KDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILT 352 (852)
Q Consensus 292 ~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~ 352 (852)
..-.+.||..++.++.. --.-+..-++-.|+++|++.+||+.|+|.||+++.=-+++.+.
T Consensus 289 ~~~~i~itq~DIr~~ql-AKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 289 IGDDIYITQKDIREFQL-AKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp SSS-EEEEHHHHHHHHH-HHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCCCEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 34457799999977643 2234455667788999999999999999999998766666663
No 87
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=95.05 E-value=0.23 Score=56.79 Aligned_cols=74 Identities=20% Similarity=0.319 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhhhcCCC
Q 003056 307 SAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAILSPTF 384 (852)
Q Consensus 307 ~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ls~~~ 384 (852)
++-+..++..+|+.+-++.+ ..|..+.+.||.|+.|.+.+.+.+.+|.++.++.+.+- ++.|||+.|+..+..+
T Consensus 393 leai~fqtr~Il~am~~~~~---~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~~ 466 (516)
T KOG2517|consen 393 LEAIAFQTREILEAMERDGG---HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGKW 466 (516)
T ss_pred HHHHHHHHHHHHHHHHHhcC---CCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCCc
Confidence 33444444555544444443 46788999999999999999999999999999988877 9999999999887653
No 88
>PRK04123 ribulokinase; Provisional
Probab=94.99 E-value=0.049 Score=64.67 Aligned_cols=81 Identities=15% Similarity=0.286 Sum_probs=55.4
Q ss_pred ecHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCCCccEEEEeCCC-CChHHHHHHHHhhcCCCCcccCCchhHHHhhHHH
Q 003056 298 IKRDEFEQISAP-ILERVKRPLEKALAETGLSVEDVHMVEVVGSS-SRVPAIIKILTEFFGKEPRRTMNASECVARGCAL 375 (852)
Q Consensus 298 itr~efe~l~~~-~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~-sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~ 375 (852)
-+|.++-+.+-+ +.-.+ ..+-+.|++.+. .++.|.++||+ ++.+.+.+++.+.||.++... ...|+.++|||+
T Consensus 408 ~~~~~l~RAvlEgia~~~-~~~~e~l~~~g~---~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~-~~~e~~alGaA~ 482 (548)
T PRK04123 408 TDAPDIYRALIEATAFGT-RAIMECFEDQGV---PVEEVIAAGGIARKNPVLMQIYADVLNRPIQVV-ASDQCPALGAAI 482 (548)
T ss_pred CCHHHHHHHHHHHHHHHH-HHHHHHHHHcCC---CcceEEEeCCCcccCHHHHHHHHHhcCCceEec-CccccchHHHHH
Confidence 356654433332 22222 233334444443 47889999999 999999999999999888544 456788999999
Q ss_pred hhhhhcCC
Q 003056 376 QCAILSPT 383 (852)
Q Consensus 376 ~aa~ls~~ 383 (852)
.|+.-.+.
T Consensus 483 lA~~~~G~ 490 (548)
T PRK04123 483 FAAVAAGA 490 (548)
T ss_pred HHHHHhcc
Confidence 99865543
No 89
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=94.94 E-value=0.098 Score=60.78 Aligned_cols=81 Identities=12% Similarity=0.071 Sum_probs=56.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhh
Q 003056 299 KRDEFEQISAPILERVKRPLEKALAET-GLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQC 377 (852)
Q Consensus 299 tr~efe~l~~~~~~~i~~~i~~~l~~a-~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~a 377 (852)
+|.+|-+.+-+-+---...+-+.|+.. +. .++.|.++||++|.+.+.+++.+.||.++.... .++.++|||+.|
T Consensus 345 ~~~~l~RAvlEgva~~~r~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a 419 (471)
T PRK10640 345 SDAELARCIFDSLALLYADVLHELAQLRGE---PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQ 419 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHH
Confidence 566665554433332233333344432 43 478899999999999999999999999885543 378999999998
Q ss_pred hhhcCCC
Q 003056 378 AILSPTF 384 (852)
Q Consensus 378 a~ls~~~ 384 (852)
+.-.+.+
T Consensus 420 ~~a~G~~ 426 (471)
T PRK10640 420 LMTLDEL 426 (471)
T ss_pred HHHcCCc
Confidence 8765543
No 90
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=94.81 E-value=0.068 Score=62.73 Aligned_cols=80 Identities=16% Similarity=0.297 Sum_probs=55.1
Q ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHHH-cCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHh
Q 003056 299 KRDEFEQISA-PILERVKRPLEKALAE-TGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQ 376 (852)
Q Consensus 299 tr~efe~l~~-~~~~~i~~~i~~~l~~-a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~ 376 (852)
+|.+|-+.+- .+.-.+...++ .+++ .|. .++.|.++||+++.+.+.+++.+.||.++...- ..|+.++|||+.
T Consensus 376 ~~~~i~rAvlEgia~~~r~~~~-~l~~~~g~---~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaAl~ 450 (504)
T PTZ00294 376 TRAHIVRAALEAIALQTNDVIE-SMEKDAGI---ELNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAALL 450 (504)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHhhCC---CcceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHHHH
Confidence 5655444332 23333333332 3333 343 378899999999999999999999999886554 556889999999
Q ss_pred hhhhcCC
Q 003056 377 CAILSPT 383 (852)
Q Consensus 377 aa~ls~~ 383 (852)
|+.-.+.
T Consensus 451 aa~a~G~ 457 (504)
T PTZ00294 451 AGLAVGV 457 (504)
T ss_pred HHhhcCc
Confidence 9865554
No 91
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=94.74 E-value=0.049 Score=58.84 Aligned_cols=68 Identities=21% Similarity=0.195 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCC-CCcccCCchhHHHhhHHHh
Q 003056 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGK-EPRRTMNASECVARGCALQ 376 (852)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~-~v~~~~n~deava~GAa~~ 376 (852)
+++-...++...|+++....+..+.+.. ++.+||.+ |++...|.+.+|. .+..+..+.-+-|+||++.
T Consensus 216 i~~~~~~~m~~~i~~~~~~~g~~~~~~~-lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~a 284 (290)
T PF01968_consen 216 IVRIANENMADAIREVSVERGYDPRDFP-LVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAVA 284 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--EEEE---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCccccc-cccccccc--ccccccccccccccccccccccccccccccccc
Confidence 3344445555555555444465543332 44556665 7888888888885 4555556788889999763
No 92
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.65 E-value=0.11 Score=61.39 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=55.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhh
Q 003056 299 KRDEFEQISAPILERVKRPLEKALAE-TGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQC 377 (852)
Q Consensus 299 tr~efe~l~~~~~~~i~~~i~~~l~~-a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~a 377 (852)
+|.++-+.+-+-+--....+-+.+++ .+. .++.|.++||+++.+.+.+++.+.||.++...- ..++.++|||+.|
T Consensus 379 ~~~~~~RAvlEgia~~~~~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~~e~~alGaA~lA 454 (520)
T PRK10939 379 NKATLFRALEENAAIVSACNLQQIAAFSGV---FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPV-VKEATALGCAIAA 454 (520)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEec-ccCchHHHHHHHH
Confidence 56555444333222222233334444 243 478899999999999999999999999986555 4467899999998
Q ss_pred hhhcCC
Q 003056 378 AILSPT 383 (852)
Q Consensus 378 a~ls~~ 383 (852)
+.-.+.
T Consensus 455 ~~~~G~ 460 (520)
T PRK10939 455 GVGAGI 460 (520)
T ss_pred HHHhCC
Confidence 865543
No 93
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=94.49 E-value=0.73 Score=50.16 Aligned_cols=75 Identities=20% Similarity=0.196 Sum_probs=44.4
Q ss_pred HHHHHHH-HHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccH
Q 003056 154 RAVIDAA-TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGR 232 (852)
Q Consensus 154 ~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~ 232 (852)
..+.+.+ ...|+++ ++|+...=|.+.|.--...++. ...+++|+|||+|.++++. ++.+ . .....++|..
T Consensus 88 ~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~---~~~~v~DiGGGSte~~~~~--~~~~--~-~~~Sl~lG~v 158 (300)
T TIGR03706 88 PEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPI---ADGLVVDIGGGSTELILGK--DFEP--G-EGVSLPLGCV 158 (300)
T ss_pred HHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCC---CCcEEEEecCCeEEEEEec--CCCE--e-EEEEEccceE
Confidence 3444444 5679986 6777777777666322223331 2359999999999999864 3322 1 1123456665
Q ss_pred HHHHH
Q 003056 233 DFDEV 237 (852)
Q Consensus 233 ~~D~~ 237 (852)
.+.+.
T Consensus 159 rl~e~ 163 (300)
T TIGR03706 159 RLTEQ 163 (300)
T ss_pred EhHHh
Confidence 55544
No 94
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=94.48 E-value=4.8 Score=43.99 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=30.9
Q ss_pred HcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEE
Q 003056 162 IAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIA 211 (852)
Q Consensus 162 ~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv 211 (852)
..|++ +.+.|+..|+|++-.+..... ..++++++.+|.|- -.+++
T Consensus 96 ~~~~p-v~v~NDa~~~alaE~~~g~~~---~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 96 RVGLP-VVVENDANAAALGEYKKGAGK---GARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHCCC-EEEechHHHHHHHHHHhcccC---CCCcEEEEEeCCcc-EEEEE
Confidence 44776 579999999998765443211 24678999999876 55554
No 95
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=94.24 E-value=1.6 Score=46.63 Aligned_cols=46 Identities=17% Similarity=0.153 Sum_probs=38.7
Q ss_pred CCccEEEEeCC-CCChHHHHHHHHhhcC---CCCcccCCchhHHHhhHHH
Q 003056 330 EDVHMVEVVGS-SSRVPAIIKILTEFFG---KEPRRTMNASECVARGCAL 375 (852)
Q Consensus 330 ~~I~~ViLvGG-~sriP~v~~~l~~~fg---~~v~~~~n~deava~GAa~ 375 (852)
..+..|+++|| .+..|.+++.+...+. .++..+-|....+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45788999999 6779999999998874 5566777899999999986
No 96
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.03 E-value=0.14 Score=56.57 Aligned_cols=55 Identities=25% Similarity=0.373 Sum_probs=47.8
Q ss_pred HcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhh
Q 003056 324 ETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQCAI 379 (852)
Q Consensus 324 ~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ 379 (852)
..|.....-..|+++||.||-..|-+.|.+.||.++..- ...++.++|+|+.|+.
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 346666678999999999999999999999999888655 8889999999999764
No 97
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.72 E-value=0.95 Score=52.30 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEe
Q 003056 154 RAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGF 213 (852)
Q Consensus 154 ~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~ 213 (852)
..+..+-+..|+++--|=-|-+|--..+|+.. .++. ....+|+|+|||+|.+++..-
T Consensus 92 eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~-~~~~--~~~~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 92 EFLARVEKELGLPIEVISGEEEARLIYLGVAS-TLPR--KGDGLVIDIGGGSTELVLGDN 148 (492)
T ss_pred HHHHHHHHHhCCceEEeccHHHHHHHHHHHHh-cCCC--CCCEEEEEecCCeEEEEEecC
Confidence 45777778889987444445555444455544 3432 567999999999999999863
No 98
>PRK09604 UGMP family protein; Validated
Probab=93.64 E-value=6.7 Score=43.32 Aligned_cols=47 Identities=17% Similarity=0.070 Sum_probs=36.5
Q ss_pred CccEEEEeCCCCChHHHHHHHHhhc---CCCCcccC---CchhHHHhhHHHhh
Q 003056 331 DVHMVEVVGSSSRVPAIIKILTEFF---GKEPRRTM---NASECVARGCALQC 377 (852)
Q Consensus 331 ~I~~ViLvGG~sriP~v~~~l~~~f---g~~v~~~~---n~deava~GAa~~a 377 (852)
.++.|+|.||.+...++++.|.+.+ |.++..+. -.|.++++|++=+-
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~ 306 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYE 306 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHH
Confidence 4678999999999999999999988 44443332 46889999997443
No 99
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=93.42 E-value=0.36 Score=49.49 Aligned_cols=73 Identities=16% Similarity=0.204 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHHHHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEe
Q 003056 122 LSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDI 201 (852)
Q Consensus 122 L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~ 201 (852)
..++++.++..++.++ .|+++-..|... .++.+--+.|-.|= .|.| .+.... .++.++++||
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ss--Ea~~~~~~vAAaNW-------~Ata-~~~~e~------~~dsci~VD~ 137 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSS--EALKNPREVAAANW-------VATA-RFLAEE------IKDSCILVDM 137 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcCh--hHhcCHHHHHHhhh-------HHHH-HHHHHh------cCCceEEEec
Confidence 4556666777777665 788888888764 23222211111110 1111 111111 2567899999
Q ss_pred CCceeEEEEEE
Q 003056 202 GHASLQVCIAG 212 (852)
Q Consensus 202 GggT~dvsiv~ 212 (852)
|+.|+|+-=+.
T Consensus 138 GSTTtDIIPi~ 148 (330)
T COG1548 138 GSTTTDIIPIK 148 (330)
T ss_pred CCcccceEeec
Confidence 99999987553
No 100
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.06 E-value=7 Score=40.49 Aligned_cols=89 Identities=13% Similarity=0.167 Sum_probs=55.2
Q ss_pred EcCCCCHHHHHHHHHHHHH---cCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEE
Q 003056 144 IPVYFTDLQRRAVIDAATI---AGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKI 220 (852)
Q Consensus 144 VP~~f~~~qR~al~~Aa~~---AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v 220 (852)
+|.+|+. |+.|+.. ++-. ..+++.-.||+....++. .....||+|+|-|++..+++. .+.+.-
T Consensus 186 iPe~FtR-----Mraaa~sal~~~t~-av~mDskfaav~gal~dp------aa~palvVd~GngHttaalvd--edRI~g 251 (342)
T COG4012 186 IPESFTR-----MRAAAMSALSAGTD-AVAMDSKFAAVMGALVDP------AADPALVVDYGNGHTTAALVD--EDRIVG 251 (342)
T ss_pred CchhHHH-----HHHHHHHHHhcCce-EEEEcchhHhhhhcccCc------ccCceEEEEccCCceEEEEec--CCeEEE
Confidence 6777763 3343332 3332 456777777766555432 234799999999999999864 444544
Q ss_pred EEEeCCCCcccHHHHHHHHHHHHHHH
Q 003056 221 LGHSFDRSVGGRDFDEVLFQHFAAKF 246 (852)
Q Consensus 221 l~~~~d~~lGG~~~D~~l~~~l~~~~ 246 (852)
+.......+.-..|...|.+++.-++
T Consensus 252 v~EHHT~~Lspekled~I~rf~~GeL 277 (342)
T COG4012 252 VYEHHTIRLSPEKLEDQIIRFVEGEL 277 (342)
T ss_pred EeecccccCCHHHHHHHHHHHHhccc
Confidence 44445666777766666666655444
No 101
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=92.85 E-value=0.76 Score=51.95 Aligned_cols=98 Identities=14% Similarity=0.206 Sum_probs=60.6
Q ss_pred cEEEEEcCCCCHHHHHHHHHHH-HHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCe
Q 003056 139 DCCIGIPVYFTDLQRRAVIDAA-TIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQ 217 (852)
Q Consensus 139 ~~VitVP~~f~~~qR~al~~Aa-~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~ 217 (852)
-+++|=+..=...+|+.|.... +.-|++-|.+=-+.. |.++. +.........||+++|..+|.|-.| -+|.
T Consensus 118 PIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDsl-----fS~~h-N~~~~~~~~~liis~g~~~T~vipv--ldG~ 189 (645)
T KOG0681|consen 118 PIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSL-----FSFYH-NYGKSSNKSGLIISMGHSATHVIPV--LDGR 189 (645)
T ss_pred CeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhH-----HHHhh-ccCcccCcceEEEecCCCcceeEEE--ecCc
Confidence 4778877776677888877764 566887655422211 11111 1111123468999999999987654 3444
Q ss_pred EEEEEEeCCCCcccHHHHHHHHHHHHHH
Q 003056 218 LKILGHSFDRSVGGRDFDEVLFQHFAAK 245 (852)
Q Consensus 218 ~~vl~~~~d~~lGG~~~D~~l~~~l~~~ 245 (852)
. ++....-.++||.....-|.+.+..+
T Consensus 190 ~-il~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 190 L-ILKDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred h-hhhcceeeccCcchHHHHHHHHHhcc
Confidence 3 33334467899998877777666544
No 102
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=92.77 E-value=0.57 Score=47.08 Aligned_cols=28 Identities=21% Similarity=0.119 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCcceeeechhHHHHH
Q 003056 152 QRRAVIDAATIAGLHPLRLFHETTATAL 179 (852)
Q Consensus 152 qR~al~~Aa~~AGl~~~~li~Ep~AAAl 179 (852)
..+.+..+++.|||.+..++.+|.|++.
T Consensus 158 ~v~n~~~~v~~agl~v~~i~~~~~A~~~ 185 (187)
T smart00842 158 AIQNLEKCVERAGLEVDGIVLEPLASAE 185 (187)
T ss_pred HHHHHHHHHHHcCCchhhEEehhhhhEe
Confidence 4577889999999999999999999874
No 103
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=92.36 E-value=18 Score=38.88 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=30.4
Q ss_pred CccEEEEeCCCCChHHHHHHHHhhcCC-------CCcccCCchhHHHhhHHHhhh
Q 003056 331 DVHMVEVVGSSSRVPAIIKILTEFFGK-------EPRRTMNASECVARGCALQCA 378 (852)
Q Consensus 331 ~I~~ViLvGG~sriP~v~~~l~~~fg~-------~v~~~~n~deava~GAa~~aa 378 (852)
+.+.|+|-||.+..+.+.+.+++.+.. ++........+.++|||..+.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 457888888777666655666655531 122333456788999998753
No 104
>PTZ00297 pantothenate kinase; Provisional
Probab=92.00 E-value=16 Score=48.32 Aligned_cols=49 Identities=20% Similarity=0.165 Sum_probs=35.2
Q ss_pred CCCccEEEEeCCC-CChHHHHHHHHhhc-----C-CCCcccCCchhHHHhhHHHhh
Q 003056 329 VEDVHMVEVVGSS-SRVPAIIKILTEFF-----G-KEPRRTMNASECVARGCALQC 377 (852)
Q Consensus 329 ~~~I~~ViLvGG~-sriP~v~~~l~~~f-----g-~~v~~~~n~deava~GAa~~a 377 (852)
..+|+.|+++|+. ...|...+.|...+ | ......-+....-|+||++..
T Consensus 1389 ~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~~ 1444 (1452)
T PTZ00297 1389 VQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCATLD 1444 (1452)
T ss_pred HcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhhcC
Confidence 3568999999995 55899998887765 2 233344466678899998754
No 105
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=90.49 E-value=1 Score=49.05 Aligned_cols=53 Identities=15% Similarity=0.379 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhhcCCCC
Q 003056 730 DHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCRPIMTKPKP 794 (852)
Q Consensus 730 ~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~kpkp 794 (852)
..++.++++.+.+.+++...||++...+- ..|...|.++|+..|++|..|.=-
T Consensus 591 ~Kl~~edKe~~e~av~e~~eWL~~n~~a~------------~Ee~~ek~kele~vv~PiisklY~ 643 (663)
T KOG0100|consen 591 GKLSDEDKETIEDAVEEALEWLESNQDAS------------KEEFKEKKKELEAVVQPIISKLYG 643 (663)
T ss_pred ccCChhHHHHHHHHHHHHHHHHhhccccc------------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45899999999999999999998764322 358999999999999999976443
No 106
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=90.28 E-value=1.3 Score=47.68 Aligned_cols=105 Identities=18% Similarity=0.217 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHHH------HHHHHHHHHcCCcceeeechhHHHHHHh-hhhcCCCCC
Q 003056 118 LGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQR------RAVIDAATIAGLHPLRLFHETTATALAY-GIYKTDLPE 190 (852)
Q Consensus 118 ~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~qR------~al~~Aa~~AGl~~~~li~Ep~AAAl~y-~~~~~~~~~ 190 (852)
+-..|+..++.+..+ .+.++.+- -|..-| ..+...-+..|+++ .+|+...=|.+.| |+.. .++
T Consensus 40 ~~~~L~~f~~~~~~~---~v~~i~~v----ATsA~R~A~N~~~~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~-~l~- 109 (285)
T PF02541_consen 40 AIDALKRFKEILKDY---GVEKIRAV----ATSALREAKNSDEFLDRIKKETGIDI-EIISGEEEARLSFLGVLS-SLP- 109 (285)
T ss_dssp HHHHHHHHHHHHHHT---TGSEEEEE----EEHHHHHSTTHHHHHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHH-HST-
T ss_pred HHHHHHHHHHHHHHC---CCCEEEEE----hhHHHHhCcCHHHHHHHHHHHhCCce-EEecHHHHHHHHHHHHHh-hcc-
Confidence 455556666565544 33333211 133333 22444445679987 5565555454444 4333 232
Q ss_pred CCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHH
Q 003056 191 NDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVL 238 (852)
Q Consensus 191 ~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l 238 (852)
.....+++|+|||+|.+++++- +.+ .... ..++|.-.+.+.+
T Consensus 110 -~~~~~lviDIGGGStEl~~~~~--~~~--~~~~-Sl~lG~vrl~e~~ 151 (285)
T PF02541_consen 110 -PDKNGLVIDIGGGSTELILFEN--GKV--VFSQ-SLPLGAVRLTERF 151 (285)
T ss_dssp -TTSSEEEEEEESSEEEEEEEET--TEE--EEEE-EES--HHHHHHHH
T ss_pred -ccCCEEEEEECCCceEEEEEEC--Cee--eEee-eeehHHHHHHHHH
Confidence 3567999999999999998643 333 2222 3578888776655
No 107
>PLN02666 5-oxoprolinase
Probab=89.27 E-value=4.4 Score=52.31 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=47.9
Q ss_pred ecHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCC-CcccCCchhHHHhhHHH
Q 003056 298 IKRDEFEQISAPI-LERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKE-PRRTMNASECVARGCAL 375 (852)
Q Consensus 298 itr~efe~l~~~~-~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~-v~~~~n~deava~GAa~ 375 (852)
++-++...-+..+ -..+...|..+....|.++.+.. ++..||+ =|..--.|.+.+|.+ +..+.++.-.-|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~~-l~afGGa--gp~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANHA-LACFGGA--GPQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCce-EEEecCc--HHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 3444444333333 34445556666666677665533 3444554 377888899999965 77788888888999975
Q ss_pred h
Q 003056 376 Q 376 (852)
Q Consensus 376 ~ 376 (852)
.
T Consensus 531 a 531 (1275)
T PLN02666 531 A 531 (1275)
T ss_pred h
Confidence 4
No 108
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=88.68 E-value=0.39 Score=54.15 Aligned_cols=65 Identities=17% Similarity=0.151 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCCCC--CccEEEEeCCCCChHHHHHHHHhhc------C--CCCcccCCchhHHHhhHHHhhhh
Q 003056 315 KRPLEKALAETGLSVE--DVHMVEVVGSSSRVPAIIKILTEFF------G--KEPRRTMNASECVARGCALQCAI 379 (852)
Q Consensus 315 ~~~i~~~l~~a~~~~~--~I~~ViLvGG~sriP~v~~~l~~~f------g--~~v~~~~n~deava~GAa~~aa~ 379 (852)
.+++..+|.+--.... -+..|+|+||++.+|++.++|+.-+ | ..|.+..||-..+=+||+.+|+.
T Consensus 540 ~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 540 AEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 4445555554322111 2789999999999999999998876 2 23567778999999999999886
No 109
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=88.57 E-value=59 Score=38.46 Aligned_cols=50 Identities=12% Similarity=0.008 Sum_probs=37.3
Q ss_pred ccEEEEeCCCCChHHHHHHHHhhc---CCCCcccC---CchhHHHhhHHHhhhhhc
Q 003056 332 VHMVEVVGSSSRVPAIIKILTEFF---GKEPRRTM---NASECVARGCALQCAILS 381 (852)
Q Consensus 332 I~~ViLvGG~sriP~v~~~l~~~f---g~~v~~~~---n~deava~GAa~~aa~ls 381 (852)
+..|+|.||.....++++.|.+.+ |.++..+. -.|.+++.|++.+....+
T Consensus 246 ~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 246 KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 567999999999999999999665 43433332 568899999887655443
No 110
>PRK09698 D-allose kinase; Provisional
Probab=88.33 E-value=41 Score=36.36 Aligned_cols=43 Identities=12% Similarity=-0.040 Sum_probs=28.0
Q ss_pred cCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEE
Q 003056 163 AGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIA 211 (852)
Q Consensus 163 AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv 211 (852)
.|++ +.+.|+..|+|++-..... . ...+++++.+|.| .-.+++
T Consensus 104 ~~~p-v~v~NDa~aaa~~E~~~~~-~---~~~~~~~v~lgtG-IG~giv 146 (302)
T PRK09698 104 LNCP-VFFSRDVNLQLLWDVKENN-L---TQQLVLGAYLGTG-MGFAVW 146 (302)
T ss_pred hCCC-EEEcchHhHHHHHHHHhcC-C---CCceEEEEEecCc-eEEEEE
Confidence 4776 5799999999876543221 1 2457888888866 334444
No 111
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=88.32 E-value=1.7 Score=52.82 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhh
Q 003056 707 VIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCR 786 (852)
Q Consensus 707 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~ 786 (852)
+...|...|..++..+.. -...+++++++.+.+.+++++.||.+. ...+++.+.++|+..+.
T Consensus 569 akN~lEs~iy~~r~~l~e---~~~~~s~~ere~i~~~l~~~~~WL~~~---------------d~~~i~~k~~eL~~~l~ 630 (663)
T PTZ00400 569 AKNEAETLIYSVEKQLSD---LKDKISDADKDELKQKITKLRSTLSSE---------------DVDSIKDKTKQLQEASW 630 (663)
T ss_pred HHHHHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHH
Confidence 444445555555555531 223578999999999999999999742 14799999999999999
Q ss_pred hhhcCC
Q 003056 787 PIMTKP 792 (852)
Q Consensus 787 ~l~~kp 792 (852)
++..+.
T Consensus 631 ~l~~k~ 636 (663)
T PTZ00400 631 KISQQA 636 (663)
T ss_pred HHHHHH
Confidence 999753
No 112
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=87.98 E-value=1.3 Score=49.19 Aligned_cols=71 Identities=23% Similarity=0.201 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCC-CCc------ccCCchhHHHhhHHH
Q 003056 303 FEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGK-EPR------RTMNASECVARGCAL 375 (852)
Q Consensus 303 fe~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~-~v~------~~~n~deava~GAa~ 375 (852)
-++++.-+..-+...|-+.++.... +++.|+++||+++-|++.+.|++.++. .+. .+.+.-||++ -|+
T Consensus 259 ~~D~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~a--FA~ 333 (364)
T PF03702_consen 259 PEDILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMA--FAW 333 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHH--HHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHH--HHH
Confidence 3444555555555556666665432 378999999999999999999999963 332 2335556554 455
Q ss_pred hhh
Q 003056 376 QCA 378 (852)
Q Consensus 376 ~aa 378 (852)
+|.
T Consensus 334 La~ 336 (364)
T PF03702_consen 334 LAY 336 (364)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 113
>PRK09557 fructokinase; Reviewed
Probab=87.72 E-value=45 Score=36.09 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=28.3
Q ss_pred cCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEE
Q 003056 163 AGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIA 211 (852)
Q Consensus 163 AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv 211 (852)
.|++ +.+.|+..|+|++-.+.... ...++++++.+|.|- -.+++
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~~---~~~~~~~~l~igtGi-G~giv 139 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGAA---AGKQTVFAVIIGTGC-GAGVA 139 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhccc---CCCCcEEEEEEccce-EEEEE
Confidence 4786 57999999999876443221 124678888888543 34443
No 114
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=87.38 E-value=5.2 Score=44.49 Aligned_cols=69 Identities=16% Similarity=0.196 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCc----ccCCchhHHHhhHHHhhh
Q 003056 307 SAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPR----RTMNASECVARGCALQCA 378 (852)
Q Consensus 307 ~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~----~~~n~deava~GAa~~aa 378 (852)
+.-+..-+...|-+.+.... ...+.|+++||+++.|++.+.|++.++..+. ..++++.-=|+.-|++|.
T Consensus 265 ~aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~ 337 (365)
T PRK09585 265 QATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAV 337 (365)
T ss_pred HHHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHH
Confidence 33334444445555554432 2246899999999999999999999863222 123444434445556654
No 115
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=87.36 E-value=11 Score=41.11 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=38.2
Q ss_pred CCccEEEEeCCCCChHHHHHHHHhhcCC----CCcccCCc----hhHHHhhHHHhhhhhcCC
Q 003056 330 EDVHMVEVVGSSSRVPAIIKILTEFFGK----EPRRTMNA----SECVARGCALQCAILSPT 383 (852)
Q Consensus 330 ~~I~~ViLvGG~sriP~v~~~l~~~fg~----~v~~~~n~----deava~GAa~~aa~ls~~ 383 (852)
.+.+.|+|.|-.+|+|-+.+.+++.|+. ++ ..+.+ -...|.|+|+.|.-+.+.
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v-~~l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKV-RKLEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhcccce-eecccccccchhhhhhHHHHhhhhhcc
Confidence 4678899999999999998888877742 22 22222 234799999998777653
No 116
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=87.33 E-value=24 Score=38.63 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhc---CCCCcccC---CchhHHHhhHH
Q 003056 315 KRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFF---GKEPRRTM---NASECVARGCA 374 (852)
Q Consensus 315 ~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f---g~~v~~~~---n~deava~GAa 374 (852)
...+.++++.. .++.|+|.||.+.-.++++.|.+.+ +.++..+. -.|.+++.|++
T Consensus 248 ~~~~~~~~~~~-----~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 248 VEKTKRALKKT-----GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred HHHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 34444444443 4678999999999999999999987 44333322 45888888886
No 117
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=86.72 E-value=2 Score=51.87 Aligned_cols=67 Identities=13% Similarity=0.100 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhh
Q 003056 707 VIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCR 786 (852)
Q Consensus 707 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~ 786 (852)
+...|...|..++..+.. -...+++++++++.+.+++++.||++. ...+++.|+++|+..++
T Consensus 528 akN~le~~i~~~~~~l~~---~~~~~~~~e~~~i~~~l~~~~~wL~~~---------------~~~~i~~k~~~L~~~~~ 589 (627)
T PRK00290 528 ARNQADSLIYQTEKTLKE---LGDKVPADEKEKIEAAIKELKEALKGE---------------DKEAIKAKTEELTQASQ 589 (627)
T ss_pred HHHHHHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHH
Confidence 334456666666665541 224578999999999999999999852 24799999999999999
Q ss_pred hhhcC
Q 003056 787 PIMTK 791 (852)
Q Consensus 787 ~l~~k 791 (852)
++..+
T Consensus 590 ~~~~~ 594 (627)
T PRK00290 590 KLGEA 594 (627)
T ss_pred HHHHH
Confidence 99864
No 118
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=86.18 E-value=74 Score=37.01 Aligned_cols=209 Identities=16% Similarity=0.068 Sum_probs=105.1
Q ss_pred cCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCC-cccHHHHHHHHHH
Q 003056 163 AGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRS-VGGRDFDEVLFQH 241 (852)
Q Consensus 163 AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~-lGG~~~D~~l~~~ 241 (852)
-++++--+..|...+=.+++.+-+.+ +..-|+++|-.|--...++-...++.+.++....+.. ||.-.- .|..+
T Consensus 110 ~~~~~kv~~~eHH~aHAasAf~~SpF---~~a~vl~iDg~Gd~~s~~~~~~~~~~~~~i~~~~~~~SLG~fY~--~~T~~ 184 (555)
T COG2192 110 KGLPVKVLFVEHHLAHAASAFFTSPF---EEALVLTIDGAGDGLSTSVWHGRNGQLTPIAQSRGIDSLGLFYA--AFTEL 184 (555)
T ss_pred ccCccceeechHHHHHHHHHhcCCCc---ccceEEEEeccCCceEEEEEeccCCeeEEEEeecCcchHHHHHH--HHHHH
Confidence 45653333444433322233333333 3578999998887777777777778887777664444 443222 33333
Q ss_pred HHHHH-Hhhh---cccccCCHHHHHHHHHHHHHhhhhcCC--CC-----cccEEEecccCCc-----ceEEEecHHHHHH
Q 003056 242 FAAKF-KEEY---KIDVSQNARASLRLRVACEKLKKVLSA--NP-----EAPLNIECLMEEK-----DVRGFIKRDEFEQ 305 (852)
Q Consensus 242 l~~~~-~~k~---~~~~~~~~~~~~rL~~~aek~K~~LS~--~~-----~~~i~ie~l~~~~-----d~~~~itr~efe~ 305 (852)
+--+- ...+ ++-....+.....++..... |..... +. ...+...++.... .......-.+|-.
T Consensus 185 lGf~~n~~EgKvMgLAaYG~p~y~~~~~d~l~~-~~~~~~~i~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~diAa 263 (555)
T COG2192 185 LGFKPNSDEGKVMGLAAYGDPNYDLSLLDLLRE-KEDGLFVINGELLKRLARLGTFSLLGALKRRLPESPSTERAADIAA 263 (555)
T ss_pred hCCCCCCCCccEEEeeccCCcccchHHHHHHhh-ccccceeccHHHHHhccccceeccccccccccccccccccHHHHHH
Confidence 32110 0011 11122223211222222222 100000 00 0000000011110 1122344456666
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHH-HHHHhhcCCCCcccCC-chhHHHhhHHHhhhhhc
Q 003056 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAII-KILTEFFGKEPRRTMN-ASECVARGCALQCAILS 381 (852)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~-~~l~~~fg~~v~~~~n-~deava~GAa~~aa~ls 381 (852)
.++..++++..-+-+.+.+... .+.+.+.||....-..- ++|.+.+..++..... .|.-.|.|||+++....
T Consensus 264 saQ~~lE~l~l~~~~~~~~~~g----~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGAAl~~~~~~ 337 (555)
T COG2192 264 SAQAYLEELVLEMLRYLREETG----EDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGAALAVKREL 337 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC----ccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHHHHHHHHHh
Confidence 6777777776666555554321 56799999998776666 7777777766655544 57779999999886543
No 119
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=86.10 E-value=5.2 Score=48.54 Aligned_cols=75 Identities=16% Similarity=0.280 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHh
Q 003056 706 SVIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFC 785 (852)
Q Consensus 706 ~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~ 785 (852)
++...|...|..++..+... +-...+++++++.+.+.+++++.||++.. .-+..++..|+++|...+
T Consensus 539 eakN~lEs~Iy~~r~~L~~~-~~~~~~t~ee~~~l~~~l~~~~~wL~~~~------------~~~~~~~~~kl~eL~~~~ 605 (653)
T PTZ00009 539 EAKNGLENYCYSMKNTLQDE-KVKGKLSDSDKATIEKAIDEALEWLEKNQ------------LAEKEEFEHKQKEVESVC 605 (653)
T ss_pred HHHhhhHHHHHHHHHHHhhh-hhhccCCHHHHHHHHHHHHHHHHHHhcCC------------chhHHHHHHHHHHHHHHH
Confidence 35556666676677666421 12245899999999999999999997411 124579999999999999
Q ss_pred hhhhcCCC
Q 003056 786 RPIMTKPK 793 (852)
Q Consensus 786 ~~l~~kpk 793 (852)
.++..+..
T Consensus 606 ~pi~~r~~ 613 (653)
T PTZ00009 606 NPIMTKMY 613 (653)
T ss_pred HHHHHHHH
Confidence 99987643
No 120
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=84.76 E-value=0.81 Score=40.45 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=18.4
Q ss_pred CeEEEEEcCccceEEEEEECC
Q 003056 1 MSVVGFDLGNESCIVAVARQR 21 (852)
Q Consensus 1 m~viGID~GTt~s~va~~~~~ 21 (852)
|.++|||+|.+++++|+++..
T Consensus 1 ~~ilgiD~Ggt~i~~a~~d~~ 21 (99)
T smart00732 1 KRVLGLDPGRKGIGVAVVDET 21 (99)
T ss_pred CcEEEEccCCCeEEEEEECCC
Confidence 789999999999999998643
No 121
>PRK14878 UGMP family protein; Provisional
Probab=84.57 E-value=68 Score=35.23 Aligned_cols=40 Identities=13% Similarity=-0.002 Sum_probs=29.4
Q ss_pred ccEEEEeCCCCChHHHHHHHHhhc---CCCCcccC---CchhHHHh
Q 003056 332 VHMVEVVGSSSRVPAIIKILTEFF---GKEPRRTM---NASECVAR 371 (852)
Q Consensus 332 I~~ViLvGG~sriP~v~~~l~~~f---g~~v~~~~---n~deava~ 371 (852)
+..|+|+||.+...++++.|.+.+ |.++..+. -.|.+++.
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~D~GimI 287 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAGDNGAMI 287 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCchHHHHH
Confidence 678999999999999999999977 44433322 34556555
No 122
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=84.33 E-value=3.2 Score=49.81 Aligned_cols=67 Identities=12% Similarity=0.142 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhh
Q 003056 707 VIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCR 786 (852)
Q Consensus 707 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~ 786 (852)
+...|...|..++..+.. ....+++++++++.+.+++++.||++. ...+++.+.++|+..++
T Consensus 526 ~kn~lEs~iy~~r~~l~~---~~~~~~~~e~~~l~~~l~~~~~wL~~~---------------d~~~i~~~~~~l~~~~~ 587 (595)
T TIGR02350 526 ARNNADSLAYQAEKTLKE---AGDKLPAEEKEKIEKAVAELKEALKGE---------------DVEEIKAKTEELQQALQ 587 (595)
T ss_pred HHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHH
Confidence 444556666666666642 134589999999999999999999753 22589999999999999
Q ss_pred hhhcC
Q 003056 787 PIMTK 791 (852)
Q Consensus 787 ~l~~k 791 (852)
+++.+
T Consensus 588 ~~~~~ 592 (595)
T TIGR02350 588 KLAEA 592 (595)
T ss_pred HHHHH
Confidence 98754
No 123
>PTZ00107 hexokinase; Provisional
Probab=83.82 E-value=44 Score=38.61 Aligned_cols=81 Identities=17% Similarity=0.221 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHcCCCCCCccEEEEeCCC-CChHHHHHHHHhhc----CCC--CcccCCchhH
Q 003056 300 RDEFEQISAPILERVKRPLEKAL----AETGLSVEDVHMVEVVGSS-SRVPAIIKILTEFF----GKE--PRRTMNASEC 368 (852)
Q Consensus 300 r~efe~l~~~~~~~i~~~i~~~l----~~a~~~~~~I~~ViLvGG~-sriP~v~~~l~~~f----g~~--v~~~~n~dea 368 (852)
+.-+..+|.-+..|...++--.+ .+.+... .--.|-+.|+. -..|.+++.+.+++ +.. ...-.-.+..
T Consensus 370 ~~~lr~i~~~V~~RAA~L~Aa~iaail~k~~~~~-~~~~VgvDGSv~~~~p~f~~~~~~~l~~ll~~~~~~v~l~~a~DG 448 (464)
T PTZ00107 370 LYTIRKICELVRGRAAQLAAAFIAAPAKKTRTVQ-GKATVAIDGSVYVKNPWFRRLLQEYINSILGPDAGNVVFYLADDG 448 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CceEEEEeCcceecCccHHHHHHHHHHHHhCCCCCcEEEEEccCc
Confidence 44455666677777666654333 3323210 11234444444 34777777777666 322 1122345667
Q ss_pred HHhhHHHhhhhhc
Q 003056 369 VARGCALQCAILS 381 (852)
Q Consensus 369 va~GAa~~aa~ls 381 (852)
.-+|||+.||...
T Consensus 449 Sg~GAAl~AA~~~ 461 (464)
T PTZ00107 449 SGKGAAIIAAMVA 461 (464)
T ss_pred hHHHHHHHHHHhc
Confidence 8899999998754
No 124
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=83.80 E-value=9.7 Score=41.73 Aligned_cols=165 Identities=13% Similarity=0.117 Sum_probs=89.4
Q ss_pred CceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccc--cCCHHHHHHHHHHHHH
Q 003056 193 QLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDV--SQNARASLRLRVACEK 270 (852)
Q Consensus 193 ~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~--~~~~~~~~rL~~~aek 270 (852)
+...+|+++|| |+-+.+-.+.-.|++. |.--|-.-||..+.++.-+.|.+....-. .-+.....+|+
T Consensus 162 ~~~r~vlNiGG----IaNlt~l~~~~~v~g~--DtGPgN~llD~wi~~~~g~~yD~~g~~A~~G~v~~~ll~~ll----- 230 (371)
T COG2377 162 RERRAVLNIGG----IANLTYLPPGGPVLGF--DTGPGNMLLDAWIQAHGGKPYDKDGAWAASGKVDEALLARLL----- 230 (371)
T ss_pred CCCeEEEeccc----eEEEEecCCCCceeee--ecCCcchHHHHHHHHhhCCCcCcCcchhhcCCcCHHHHHHHh-----
Confidence 57899999998 4444444332256655 56778888888888776655433211100 11222223332
Q ss_pred hhhhcCCCCcccEEEecccCCcceEEE-----------ecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeC
Q 003056 271 LKKVLSANPEAPLNIECLMEEKDVRGF-----------IKRDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVG 339 (852)
Q Consensus 271 ~K~~LS~~~~~~i~ie~l~~~~d~~~~-----------itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvG 339 (852)
...-|+... +...+-.+|... ++.+++..-...+- .. .+++.......+-+.++++|
T Consensus 231 ~~p~F~~~~------PkStgRe~F~~~wl~~~~~~~~~l~a~Dv~aTL~elt---A~---tIv~s~~~~~~~p~~l~vcG 298 (371)
T COG2377 231 AHPYFALPA------PKSTGRELFNLQWLEQHLDDTQLLNAEDVQATLVELT---AA---TIVKSVATLQGDPRRLVVCG 298 (371)
T ss_pred hCCcccCCC------cccCCccccchhhHHHHHhhccCCCHHHHHHHHHHHH---HH---HHHHHHhhccCCCceeEeec
Confidence 223332221 001111122221 33333333222222 11 22222233345678999999
Q ss_pred CCCChHHHHHHHHhhc-CCCCc----ccCCchhHHHhhHHHhhhhh
Q 003056 340 SSSRVPAIIKILTEFF-GKEPR----RTMNASECVARGCALQCAIL 380 (852)
Q Consensus 340 G~sriP~v~~~l~~~f-g~~v~----~~~n~deava~GAa~~aa~l 380 (852)
|+.+-|.+.+.|...+ |..|. ..+++|..=|.+-|+.|...
T Consensus 299 GG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 299 GGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred CCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 9999999999999999 54443 25677777777777777643
No 125
>PLN03184 chloroplast Hsp70; Provisional
Probab=83.37 E-value=5.5 Score=48.45 Aligned_cols=67 Identities=12% Similarity=0.054 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhh
Q 003056 707 VIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCR 786 (852)
Q Consensus 707 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~ 786 (852)
+...+...|..++..+.. -...+++++++.+.+.+++++.||... + ..+++.+.++|...++
T Consensus 567 akN~lE~~iy~~r~~l~e---~~~~~~~eer~~l~~~l~~~e~wL~~~-----------d----~~~ik~~~~~l~~~l~ 628 (673)
T PLN03184 567 TKNQADSVVYQTEKQLKE---LGDKVPADVKEKVEAKLKELKDAIASG-----------S----TQKMKDAMAALNQEVM 628 (673)
T ss_pred HHHhHHHHHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHHHHhcC-----------C----HHHHHHHHHHHHHHHH
Confidence 333445555555555531 223578999999999999999999741 1 3578888888888888
Q ss_pred hhhcC
Q 003056 787 PIMTK 791 (852)
Q Consensus 787 ~l~~k 791 (852)
++..+
T Consensus 629 ~l~~~ 633 (673)
T PLN03184 629 QIGQS 633 (673)
T ss_pred HHHHH
Confidence 87764
No 126
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=82.59 E-value=3.7 Score=46.36 Aligned_cols=83 Identities=17% Similarity=0.274 Sum_probs=58.3
Q ss_pred ecHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHHh
Q 003056 298 IKRDEFEQIS-APILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCALQ 376 (852)
Q Consensus 298 itr~efe~l~-~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~~ 376 (852)
.++++|-+.. +.+.-+...+++..-++++. .+..+-+=||.++..++-+.+.+.+|.++.++.+ .|..|+|||+.
T Consensus 371 t~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~-~EtTAlGaA~l 446 (499)
T COG0554 371 TTKAHIARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGVPVERPVV-LETTALGAAYL 446 (499)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHhCCeeecccc-chhhHHHHHHH
Confidence 4555544332 23333444444444444554 5788889999999999999999999998877754 56789999999
Q ss_pred hhhhcCCC
Q 003056 377 CAILSPTF 384 (852)
Q Consensus 377 aa~ls~~~ 384 (852)
|..-.+.+
T Consensus 447 AGla~G~w 454 (499)
T COG0554 447 AGLAVGFW 454 (499)
T ss_pred HhhhhCcC
Confidence 98766643
No 127
>PRK13411 molecular chaperone DnaK; Provisional
Probab=82.06 E-value=5.6 Score=48.27 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhh
Q 003056 707 VIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCR 786 (852)
Q Consensus 707 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~ 786 (852)
+...+...|..++..+.. ....++++++..+.+.+++++.||.+ + + ....+++.++++|+..+.
T Consensus 530 akN~lEs~iy~~r~~l~~---~~~~~~~~er~~i~~~l~~~~~wL~~----~--------~-~~~~~~~~~~~el~~~~~ 593 (653)
T PRK13411 530 LKNQADSLLYSYESTLKE---NGELISEELKQRAEQKVEQLEAALTD----P--------N-ISLEELKQQLEEFQQALL 593 (653)
T ss_pred HHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhc----C--------C-CCHHHHHHHHHHHHHHHH
Confidence 455556666666666642 13568999999999999999999964 1 1 245799999999999999
Q ss_pred hhhcC
Q 003056 787 PIMTK 791 (852)
Q Consensus 787 ~l~~k 791 (852)
++..+
T Consensus 594 ~i~~~ 598 (653)
T PRK13411 594 AIGAE 598 (653)
T ss_pred HHHHH
Confidence 98854
No 128
>PLN02939 transferase, transferring glycosyl groups
Probab=82.00 E-value=34 Score=42.76 Aligned_cols=179 Identities=12% Similarity=0.135 Sum_probs=114.4
Q ss_pred CCHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhHHHhh---hhhhcCCCHHHHHHHHHHHHHHHHHhhhcCCC
Q 003056 598 MLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYDMRNKLC---DKYQDFVTDSERELFTSKLQETEDWLYEDGED 674 (852)
Q Consensus 598 ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~L~---~~~~~~~~~~er~~i~~~l~e~~~WL~~dg~~ 674 (852)
+-+++++.++.++.+.+.-|+..+.++.-+.-|++++-++..++. .+.. .+.+-+-+.+-++++.+...|..-...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (977)
T PLN02939 237 LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVS-KLSPLQYDCWWEKVENLQDLLDRATNQ 315 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-hccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999999999999999999984 1222 223333344666666666666431111
Q ss_pred cc-HHHHHHHHHHHHhccchHH---HHHHhhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 003056 675 ET-KGVYVAKLEELKKQGDPIE---ERYKEFTDRSSVIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAW 750 (852)
Q Consensus 675 a~-~~~~~~kl~~L~~~~~pi~---~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~W 750 (852)
+. .....++-++|++.++.+. .+.+-++.|+..++.+++.+...+..+...+... ...++--...++++++-
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 391 (977)
T PLN02939 316 VEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEI----HSYIQLYQESIKEFQDT 391 (977)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHH
Confidence 11 1111222333444333333 4566677899999999998888877664433221 34555566677777888
Q ss_pred HHHHHHHhhc----CCCCCCCcccHHHHHHHHHHH
Q 003056 751 VREKKQQQDA----LPKYAAPVLLLGDVRRKAEAL 781 (852)
Q Consensus 751 l~~~~~~q~~----~~~~~dP~~~~~di~~k~~~l 781 (852)
|+...+++.+ .|.++.|.-.|++|.-+++.+
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~id~~ 426 (977)
T PLN02939 392 LSKLKEESKKRSLEHPADDMPSEFWSRILLLIDGW 426 (977)
T ss_pred HHHHHhhhhcccccCchhhCCHHHHHHHHHHHHHH
Confidence 8777777766 345566666666776666554
No 129
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=80.47 E-value=1.7 Score=41.18 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=19.1
Q ss_pred CeEEEEEcCccceEEEEEECCc
Q 003056 1 MSVVGFDLGNESCIVAVARQRG 22 (852)
Q Consensus 1 m~viGID~GTt~s~va~~~~~~ 22 (852)
|.++|||+|+..+.+|+.++..
T Consensus 1 mriL~lD~G~kriGiAvsd~~~ 22 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPLG 22 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETTT
T ss_pred CeEEEEEeCCCeEEEEEecCCC
Confidence 8899999999999999988653
No 130
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=79.69 E-value=1.1e+02 Score=34.04 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhc
Q 003056 312 ERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFF 355 (852)
Q Consensus 312 ~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f 355 (852)
+-+.+.+.++++.. .+..|+++||-+...++|+.|++.+
T Consensus 249 ~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~ 287 (345)
T PTZ00340 249 AMLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMA 287 (345)
T ss_pred HHHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 33344444555443 4678999999999999999999987
No 131
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=79.10 E-value=25 Score=36.77 Aligned_cols=97 Identities=18% Similarity=0.262 Sum_probs=55.9
Q ss_pred CCCcCcEEE--EEcCCCCHHHHHHHHHHHHHcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEE
Q 003056 134 NAAVVDCCI--GIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIA 211 (852)
Q Consensus 134 ~~~~~~~Vi--tVP~~f~~~qR~al~~Aa~~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv 211 (852)
+..+...+. .+|.+|+.- +++++++...|.+. .+++-. +||+.=++..... .....++++|+|-|+|-++++
T Consensus 111 g~~~~~~~y~~~~P~~~TRm--~av~~~~~~~~~~~-~vmDTg-~AAvlGal~d~~v--~~~~~~~~vniGN~HTlaa~v 184 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTRM--RAVRESLGGAGYDE-VVMDTG-PAAVLGALCDPEV--SSREGIIVVNIGNGHTLAALV 184 (254)
T ss_pred CCCHHHeeecCCCcHHHHHH--HHHHHHhccCCCCc-eEecCH-HHHHhhhhcChhh--hccCCeEEEEeCCccEEEEEE
Confidence 456777888 899997743 45666666666665 344444 4444333322111 235789999999999988887
Q ss_pred EeeCCeEEEEEEeCCCCcccHHHHHHH
Q 003056 212 GFKKGQLKILGHSFDRSVGGRDFDEVL 238 (852)
Q Consensus 212 ~~~~~~~~vl~~~~d~~lGG~~~D~~l 238 (852)
.++.+.=+.-.....+-...+...|
T Consensus 185 --~~~rI~GvfEHHT~~l~~~kL~~~l 209 (254)
T PF08735_consen 185 --KDGRIYGVFEHHTGMLTPEKLEEYL 209 (254)
T ss_pred --eCCEEEEEEecccCCCCHHHHHHHH
Confidence 3443333333333444444443333
No 132
>PLN02596 hexokinase-like
Probab=77.99 E-value=1.4e+02 Score=34.67 Aligned_cols=82 Identities=16% Similarity=0.138 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHcCCCCCCccEEEEeCCCC--ChHHH----HHHHHhhcCCCCc---ccCCch
Q 003056 300 RDEFEQISAPILERVKRPLEK----ALAETGLSVEDVHMVEVVGSSS--RVPAI----IKILTEFFGKEPR---RTMNAS 366 (852)
Q Consensus 300 r~efe~l~~~~~~~i~~~i~~----~l~~a~~~~~~I~~ViLvGG~s--riP~v----~~~l~~~fg~~v~---~~~n~d 366 (852)
|.-+..+|.-+..|...++-- +|...+-. ..-..++-+-|+- ..|.+ ++.|.+.+|.... .-.-.+
T Consensus 392 ~~~lr~i~~~V~~RAArL~Aa~iaail~k~g~~-~~~~~~VavDGSvye~~p~f~~~l~~al~ellg~~~~~~i~~~~s~ 470 (490)
T PLN02596 392 REVVAEVCDIVAERGARLAGAGIVGIIKKLGRI-ENKKSVVTVEGGLYEHYRVFRNYLHSSVWEMLGSELSDNVVIEHSH 470 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEeCcceeeCcCHHHHHHHHHHHHhCcccCCcEEEEEcc
Confidence 444555666666666555433 33333311 1113455666663 34545 4555555553221 111244
Q ss_pred hHHHhhHHHhhhhhcC
Q 003056 367 ECVARGCALQCAILSP 382 (852)
Q Consensus 367 eava~GAa~~aa~ls~ 382 (852)
..-..|||+.||..|.
T Consensus 471 DGSG~GAAl~AA~~~~ 486 (490)
T PLN02596 471 GGSGAGALFLAACQTG 486 (490)
T ss_pred CchhHHHHHHHHhhcc
Confidence 5668899999998774
No 133
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=75.85 E-value=11 Score=41.94 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=45.1
Q ss_pred eeecHHHHHHHHHHHHHHHHHHhcCCCcC-cEEEEEcCCCCHHHHHHHHHHHHHcCCcceeeechhHHH--HHHhhhhcC
Q 003056 110 RVFTPTQVLGMLLSNLKAIAESNLNAAVV-DCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTAT--ALAYGIYKT 186 (852)
Q Consensus 110 ~~~~~eel~a~~L~~l~~~a~~~~~~~~~-~~VitVP~~f~~~qR~al~~Aa~~AGl~~~~li~Ep~AA--Al~y~~~~~ 186 (852)
..+.+.+-...+|+.+++..+....-++. ++ |+| +.=.+|..-| .++|.+...
T Consensus 152 LRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~-VsI-----------------------m~GtdEGv~aWiTiN~Llg~L 207 (453)
T KOG1385|consen 152 LRLLPGSKADNILQAVRELLKNDSPFPVVEDA-VSI-----------------------MDGTDEGVYAWITINYLLGTL 207 (453)
T ss_pred cccCChhHHHHHHHHHHHHHhccCCccccCCc-eee-----------------------ccCcccceeeeeehhhhhccc
Confidence 45778888999999999887633222221 11 111 1111222211 345654432
Q ss_pred CCCCCCCceEEEEEeCCceeEEEEEE
Q 003056 187 DLPENDQLNVAFVDIGHASLQVCIAG 212 (852)
Q Consensus 187 ~~~~~~~~~vlv~D~GggT~dvsiv~ 212 (852)
.......+.++|+|||+|+++..-
T Consensus 208 --~~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 208 --GAPGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred --CCCCCCceEEEEcCCceEEEEEec
Confidence 222357899999999999999764
No 134
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=75.23 E-value=12 Score=44.45 Aligned_cols=62 Identities=13% Similarity=0.209 Sum_probs=48.8
Q ss_pred chHHHHHHhhhcchHHHHHHHHHHHHHHHHHhcCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Q 003056 692 DPIEERYKEFTDRSSVIDQLAYCINSYREAALSSDPKFD-HIDIAEKQKVLNECADAEAWVREKK 755 (852)
Q Consensus 692 ~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~-~~~~~e~~~v~~~~~~~~~Wl~~~~ 755 (852)
..+..+=.+..+|..|.+.|...|-.++..+.. +.|. .-+++|+..|.+.+.....||.+-.
T Consensus 647 ~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d--~ey~e~at~EEk~~L~~~~~~~~~Wleed~ 709 (902)
T KOG0104|consen 647 EDFVQKEKEKSEREEASNELEAFLFELQDKLDD--DEYAEVATEEEKKILKKKVSLLMDWLEEDG 709 (902)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC--chHhhhcCHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455567778888999998888888777755 4443 3679999999999999999999877
No 135
>CHL00094 dnaK heat shock protein 70
Probab=75.07 E-value=8.8 Score=46.31 Aligned_cols=67 Identities=13% Similarity=0.058 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhh
Q 003056 707 VIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCR 786 (852)
Q Consensus 707 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~ 786 (852)
+...+...|..++..+.. -...+++++++++...+++++.||.+. -..+++.+.++|+..++
T Consensus 530 ~kn~le~~i~~~~~~l~~---~~~~~~~~~~~~~~~~l~~~~~wl~~~---------------~~~~~~~~~~~l~~~~~ 591 (621)
T CHL00094 530 LKNQAESLCYQAEKQLKE---LKDKISEEKKEKIENLIKKLRQALQND---------------NYESIKSLLEELQKALM 591 (621)
T ss_pred HHHHhHHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHH
Confidence 333455555555555531 224578999999999999999999752 11689999999999999
Q ss_pred hhhcC
Q 003056 787 PIMTK 791 (852)
Q Consensus 787 ~l~~k 791 (852)
++..|
T Consensus 592 ~~~~k 596 (621)
T CHL00094 592 EIGKE 596 (621)
T ss_pred HHHHH
Confidence 98864
No 136
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=74.95 E-value=93 Score=37.76 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=16.3
Q ss_pred EEEEEcCccceEEEEEEC
Q 003056 3 VVGFDLGNESCIVAVARQ 20 (852)
Q Consensus 3 viGID~GTt~s~va~~~~ 20 (852)
+||||+|.|++++|++..
T Consensus 20 ~L~iDIGGT~ir~al~~~ 37 (638)
T PRK14101 20 RLLADVGGTNARFALETG 37 (638)
T ss_pred EEEEEcCchhheeeeecC
Confidence 799999999999999853
No 137
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=74.83 E-value=14 Score=41.41 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=16.2
Q ss_pred eEEEEEcCccceEEEEEE
Q 003056 2 SVVGFDLGNESCIVAVAR 19 (852)
Q Consensus 2 ~viGID~GTt~s~va~~~ 19 (852)
.++.||||.||.+|+.+.
T Consensus 76 ~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 76 SVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred CEEEEecCCceEEEEEEE
Confidence 489999999999999875
No 138
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=74.78 E-value=28 Score=38.85 Aligned_cols=82 Identities=16% Similarity=0.070 Sum_probs=56.7
Q ss_pred EEecHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCCCccE-EEEeCCCCChHHHHHHHHhhcC-CCCcc-cCCchhHHHh
Q 003056 296 GFIKRDEFEQISAPILERV-KRPLEKALAETGLSVEDVHM-VEVVGSSSRVPAIIKILTEFFG-KEPRR-TMNASECVAR 371 (852)
Q Consensus 296 ~~itr~efe~l~~~~~~~i-~~~i~~~l~~a~~~~~~I~~-ViLvGG~sriP~v~~~l~~~fg-~~v~~-~~n~deava~ 371 (852)
..-.+.++-..++..++++ ...++.++++.+ ++. |.|.||...--..-..|.+..+ .++.. +.-.|..+|+
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 3456778888888777666 455667777766 445 9999999988888888888755 33433 3456888999
Q ss_pred hHHHhhhhhcC
Q 003056 372 GCALQCAILSP 382 (852)
Q Consensus 372 GAa~~aa~ls~ 382 (852)
|||+++.....
T Consensus 206 GaA~~~~~~~~ 216 (360)
T PF02543_consen 206 GAALYAWHELG 216 (360)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999885543
No 139
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=74.45 E-value=10 Score=40.49 Aligned_cols=85 Identities=15% Similarity=0.059 Sum_probs=54.8
Q ss_pred EecHHHHHHHHHH---HHHHHHHHHHHHHHH-cCCCC--CCccEEEEeCC--CCChH-HHHHHHHhhcCCCCcccCCchh
Q 003056 297 FIKRDEFEQISAP---ILERVKRPLEKALAE-TGLSV--EDVHMVEVVGS--SSRVP-AIIKILTEFFGKEPRRTMNASE 367 (852)
Q Consensus 297 ~itr~efe~l~~~---~~~~i~~~i~~~l~~-a~~~~--~~I~~ViLvGG--~sriP-~v~~~l~~~fg~~v~~~~n~de 367 (852)
..+++||.+.+.. ....+..++.-+... +.+.. .....|+|.|- ++|.| .|++.|++.|..++ ..+.. +
T Consensus 222 ~~~~eE~~~~~~~~e~~~lA~dal~~~vameIasLl~l~~~~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V-~~L~~-k 299 (326)
T TIGR03281 222 ENAKEEILNNYNGDEPGRLALDSLAMSVAMEIASLGLLDCKEAGVVLAGSGGTLREPINFSGKIKRVLSCKV-LVLDS-E 299 (326)
T ss_pred cCCHHHHHHHhccChhHHHHHHHHHHHHHHHHHhheeccCCCCcEEEeCcchhccCchHHHHHHHHHhCCCe-EEecc-h
Confidence 4678888776632 222333333222222 12211 23458999987 99999 99999999998655 33444 7
Q ss_pred HHHhhHHHhhhhhcCC
Q 003056 368 CVARGCALQCAILSPT 383 (852)
Q Consensus 368 ava~GAa~~aa~ls~~ 383 (852)
+.|.|+|+.|.-+...
T Consensus 300 sAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 300 SAAIGLALIAEDIFSG 315 (326)
T ss_pred hhhhhHHHHHHHHhCC
Confidence 7899999999877654
No 140
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=71.40 E-value=15 Score=44.01 Aligned_cols=74 Identities=19% Similarity=0.355 Sum_probs=55.0
Q ss_pred hhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHH
Q 003056 701 FTDRSSVIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEA 780 (852)
Q Consensus 701 ~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~ 780 (852)
...+-++.+.+.+.+...+..+... +..+++++. .+.+++...||.+....-. ..++..|+++
T Consensus 526 ~~~~~e~kn~lE~~i~~~r~~l~~~---~~~~~~~~~---~~~l~~~~~wl~~~~~~~~-----------~~e~~~kl~~ 588 (602)
T PF00012_consen 526 RRERAEAKNELESYIYELRDKLEED---KDFVSEEEK---KKKLKETSDWLEDNGEDAD-----------KEEYKEKLEE 588 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCC---GGGSTHHHH---HHHHHHHHHHHHHHTTTSH-----------HHHHHHHHHH
T ss_pred hhhccccHHHHHHHHHHHHHHHHhh---hccCCHHHH---HHHHHHHHHHHHhhccCCC-----------HHHHHHHHHH
Confidence 3444456667777777777777554 556777776 7788888999998764222 6799999999
Q ss_pred HHHHhhhhhcC
Q 003056 781 LDRFCRPIMTK 791 (852)
Q Consensus 781 l~~~~~~l~~k 791 (852)
|++.++++..+
T Consensus 589 L~~~~~~i~~r 599 (602)
T PF00012_consen 589 LKKVIEPIKKR 599 (602)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 141
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=70.99 E-value=8.8 Score=45.24 Aligned_cols=52 Identities=25% Similarity=0.594 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhhcCCC
Q 003056 730 DHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCRPIMTKPK 793 (852)
Q Consensus 730 ~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~kpk 793 (852)
..+.++++.++.+.|+++..||+...... ..+++.|.++|+..|++++.+..
T Consensus 562 ~~i~~~~~~~~~~~~~~~i~wl~~~~~~~------------~~e~e~k~~el~~~~~p~~~~~~ 613 (620)
T KOG0101|consen 562 GKINEEDKQKILDKCNEVINWLDKNQLAE------------KEEFEHKQKELELVCNPIISKLY 613 (620)
T ss_pred cccChhhhhhHHHHHHHHHHHhhhccccc------------ccHHHHHHHHHHhhccHHHHhhh
Confidence 56899999999999999999998543322 46899999999999999998754
No 142
>PLN02920 pantothenate kinase 1
Probab=70.51 E-value=1.4e+02 Score=33.51 Aligned_cols=49 Identities=8% Similarity=-0.067 Sum_probs=35.5
Q ss_pred CCccEEEEeCCCCChH-HHHHHHHhh---cC---CCCcccCCchhHHHhhHHHhhh
Q 003056 330 EDVHMVEVVGSSSRVP-AIIKILTEF---FG---KEPRRTMNASECVARGCALQCA 378 (852)
Q Consensus 330 ~~I~~ViLvGG~sriP-~v~~~l~~~---fg---~~v~~~~n~deava~GAa~~aa 378 (852)
..++.|+++|+..|.+ ...+.|.-. .. .+....-+.....|+||++...
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~~ 351 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSYE 351 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhcc
Confidence 4688999999999998 777744333 32 3445556788899999987643
No 143
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=70.46 E-value=3.8 Score=43.01 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=17.0
Q ss_pred EEEEEcCccceEEEEEECC
Q 003056 3 VVGFDLGNESCIVAVARQR 21 (852)
Q Consensus 3 viGID~GTt~s~va~~~~~ 21 (852)
+||||+|||++++++++..
T Consensus 2 ~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEECSSEEEEEEEETT
T ss_pred EEEEEEcccceEEEEEeCC
Confidence 7999999999999998743
No 144
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=70.32 E-value=5.6 Score=47.91 Aligned_cols=42 Identities=14% Similarity=0.110 Sum_probs=28.3
Q ss_pred ceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEE
Q 003056 167 PLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAG 212 (852)
Q Consensus 167 ~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~ 212 (852)
+..+.+-|.|-.+........ . .+ +++++||||.|||++++.
T Consensus 255 v~tI~SGPAagvvGAa~ltg~-~--~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 255 VETILSGPAAGVVGAAYLTGL-K--AG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred eeeEeeccHHHHHHHHHhccc-c--cC-CEEEEEcCCcceeeeeee
Confidence 444666676666655443111 1 13 699999999999999986
No 145
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=70.10 E-value=2.2e+02 Score=33.09 Aligned_cols=62 Identities=6% Similarity=0.019 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhhcCCCC
Q 003056 731 HIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCRPIMTKPKP 794 (852)
Q Consensus 731 ~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~kpkp 794 (852)
++..+-+.-|.+-+..+-.-|.+.+.. +.=.-.++.-...+|+.-++.-+.++-.+.+.+-+
T Consensus 206 ~LeKenIsYlSsgLhHv~tElKeii~n--K~YtG~~~~~n~~~Vk~ALq~YqELLPKvtTQeAa 267 (574)
T PF07462_consen 206 NLEKENISYLSSGLHHVFTELKEIIKN--KKYTGNDHAKNIAEVKEALQAYQELLPKVTTQEAA 267 (574)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHHhc--CCCCCCChhhhHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 355566666666666666666655542 22233567777788888888877777666655544
No 146
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=70.01 E-value=1.8e+02 Score=31.98 Aligned_cols=41 Identities=12% Similarity=0.040 Sum_probs=31.0
Q ss_pred ccEEEEeCCCCChHHHHHHHHhhc---CCCCcccC---CchhHHHhh
Q 003056 332 VHMVEVVGSSSRVPAIIKILTEFF---GKEPRRTM---NASECVARG 372 (852)
Q Consensus 332 I~~ViLvGG~sriP~v~~~l~~~f---g~~v~~~~---n~deava~G 372 (852)
+..|+|.||.+...++++.|.+.+ |.++..+. -.|.+++.|
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 567999999999999999999965 33333222 357788888
No 147
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=69.22 E-value=62 Score=35.19 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=26.8
Q ss_pred cCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCce
Q 003056 163 AGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHAS 205 (852)
Q Consensus 163 AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT 205 (852)
.|++ +.+-|+..|+|++..+.... .....++++-+|-|-
T Consensus 106 ~~~P-v~veNDan~aalaE~~~g~~---~~~~~~~~i~~gtGI 144 (314)
T COG1940 106 LGLP-VFVENDANAAALAEAWFGAG---RGIDDVVYITLGTGI 144 (314)
T ss_pred HCCC-EEEecHHHHHHHHHHHhCCC---CCCCCEEEEEEccce
Confidence 4555 47999999999988765432 124577887777653
No 148
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=68.94 E-value=27 Score=38.10 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=37.7
Q ss_pred HHHHHHHHhhhcCCCccHHHHHHHHHHHHhccchHHHHHHhhhcchHH
Q 003056 660 KLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEFTDRSSV 707 (852)
Q Consensus 660 ~l~e~~~WL~~dg~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a 707 (852)
.|+++++||-++ +. +++.+.+++.+-++.+-||.-++.|+-.-=..
T Consensus 9 ~LeeLe~kLa~~-d~-~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~ 54 (379)
T PF11593_consen 9 KLEELEEKLASN-DN-SKDSVMDKISEAQDSILPLRLQFNEFIQTMAN 54 (379)
T ss_pred cHHHHHHHHhcC-Cc-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 588999999854 44 99999999999999999999988876543333
No 149
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=66.72 E-value=5.3 Score=37.97 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.5
Q ss_pred CeEEEEEcCccceEEEEEECC
Q 003056 1 MSVVGFDLGNESCIVAVARQR 21 (852)
Q Consensus 1 m~viGID~GTt~s~va~~~~~ 21 (852)
|.++|||+|+..+.+|+.++.
T Consensus 4 ~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CcEEEEEeCCCEEEEEEecCC
Confidence 679999999999999997653
No 150
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=65.92 E-value=5.9 Score=37.67 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.7
Q ss_pred CeEEEEEcCccceEEEEEECC
Q 003056 1 MSVVGFDLGNESCIVAVARQR 21 (852)
Q Consensus 1 m~viGID~GTt~s~va~~~~~ 21 (852)
|.++|||||+-.+.||+.+..
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 789999999999999997654
No 151
>PTZ00288 glucokinase 1; Provisional
Probab=65.41 E-value=33 Score=38.89 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=16.9
Q ss_pred eEEEEEcCccceEEEEEEC
Q 003056 2 SVVGFDLGNESCIVAVARQ 20 (852)
Q Consensus 2 ~viGID~GTt~s~va~~~~ 20 (852)
.++|+|+|.|++++++++.
T Consensus 27 ~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 27 IFVGCDVGGTNARVGFARE 45 (405)
T ss_pred eEEEEEecCCceEEEEEec
Confidence 4899999999999999864
No 152
>PLN02362 hexokinase
Probab=65.39 E-value=24 Score=41.10 Aligned_cols=33 Identities=18% Similarity=0.052 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCC--cceeeechhHHHHHHhhh
Q 003056 151 LQRRAVIDAATIAGL--HPLRLFHETTATALAYGI 183 (852)
Q Consensus 151 ~qR~al~~Aa~~AGl--~~~~li~Ep~AAAl~y~~ 183 (852)
.-.+.|.+|...-|+ +++.|+|+.++..++.++
T Consensus 206 DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY 240 (509)
T PLN02362 206 DVAECLQGALNRRGLDMRVAALVNDTVGTLALGHY 240 (509)
T ss_pred hHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhc
Confidence 334555555555554 578899999998876543
No 153
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=64.49 E-value=20 Score=36.56 Aligned_cols=52 Identities=19% Similarity=0.366 Sum_probs=33.6
Q ss_pred CceEEEEEeCCceeEEEEEEeeCC-eEEEEEEeCCCC---cccHHHHHHHHHHHHHHH
Q 003056 193 QLNVAFVDIGHASLQVCIAGFKKG-QLKILGHSFDRS---VGGRDFDEVLFQHFAAKF 246 (852)
Q Consensus 193 ~~~vlv~D~GggT~dvsiv~~~~~-~~~vl~~~~d~~---lGG~~~D~~l~~~l~~~~ 246 (852)
...+|++|+||.++-+++|++.++ .+++....+... .-|.. ..|++|+++.+
T Consensus 62 ~G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip~~~~~~~~--~~lFd~ia~~i 117 (206)
T PF00349_consen 62 KGDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKIPEELMNGSG--EELFDFIADCI 117 (206)
T ss_dssp EEEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE--HHHHTSBH--HHHHHHHHHHH
T ss_pred CceEEEEeecCcEEEEEEEEEcCCCCceeeeccccCChHHhcCCc--ccHHHHHHHHH
Confidence 567999999999999999999976 444433322222 11211 56667776654
No 154
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=64.04 E-value=1.7e+02 Score=31.89 Aligned_cols=39 Identities=18% Similarity=0.274 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhc
Q 003056 312 ERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFF 355 (852)
Q Consensus 312 ~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f 355 (852)
+-+...++++++.. .++.|+|.||.....++++.|.+.+
T Consensus 244 ~~l~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 244 DHLIEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 33344445555543 4678999999999999999998887
No 155
>PLN02405 hexokinase
Probab=63.99 E-value=24 Score=41.04 Aligned_cols=56 Identities=20% Similarity=0.121 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHcCCc--ceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEE
Q 003056 149 TDLQRRAVIDAATIAGLH--PLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIA 211 (852)
Q Consensus 149 ~~~qR~al~~Aa~~AGl~--~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv 211 (852)
...-.+.|.+|+..-|++ ++.|||+.++..++.++.. +...+-+=+|-||=-+.+-
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~-------~~~~iG~IlGTGtNacY~E 261 (497)
T PLN02405 204 GQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYN-------PDVVAAVILGTGTNAAYVE 261 (497)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCC-------CCceEEEEEeCCeeeEEEe
Confidence 333445566666666664 7889999999877655432 2333334467776544443
No 156
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=63.28 E-value=20 Score=28.55 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=27.4
Q ss_pred cEEEEEcCCCCHHHHHHHHHHHHHcCCcce
Q 003056 139 DCCIGIPVYFTDLQRRAVIDAATIAGLHPL 168 (852)
Q Consensus 139 ~~VitVP~~f~~~qR~al~~Aa~~AGl~~~ 168 (852)
...++.|+.++..+|..+.+.|...||..-
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s~ 45 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKSK 45 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCce
Confidence 678999999999999999999999998753
No 157
>PRK02224 chromosome segregation protein; Provisional
Probab=62.97 E-value=1e+02 Score=38.90 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHh
Q 003056 597 GMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWL 668 (852)
Q Consensus 597 ~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL 668 (852)
.+++.+...+..++..+..-+.......+++..++...-.++..+. .+...+...++..+...|..++.=+
T Consensus 145 ~~~p~~R~~ii~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~l~~~l~~~~~~l 215 (880)
T PRK02224 145 NATPSDRQDMIDDLLQLGKLEEYRERASDARLGVERVLSDQRGSLD-QLKAQIEEKEEKDLHERLNGLESEL 215 (880)
T ss_pred cCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888887755555555555555556666666666664 2333333344454555555444444
No 158
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=62.88 E-value=2.8e+02 Score=33.68 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=21.8
Q ss_pred hHHHHHHhhhcchHHHHHHHHHHHHHHHHHhcCCCC
Q 003056 693 PIEERYKEFTDRSSVIDQLAYCINSYREAALSSDPK 728 (852)
Q Consensus 693 pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~ 728 (852)
-+..-.+.|..||+-..-...+|.+..---...|+.
T Consensus 410 hlllirnDy~~rpqYykLIEecISqIvlHr~~~DPd 445 (1102)
T KOG1924|consen 410 HLLLIRNDYYIRPQYYKLIEECISQIVLHRTGMDPD 445 (1102)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 344445788888888777777776654322334443
No 159
>PRK03011 butyrate kinase; Provisional
Probab=62.29 E-value=14 Score=41.19 Aligned_cols=46 Identities=13% Similarity=0.124 Sum_probs=36.9
Q ss_pred CccEEEEeCCCCChHHHHHHHHhhcC----CCCcccCCchhHHHhhHHHh
Q 003056 331 DVHMVEVVGSSSRVPAIIKILTEFFG----KEPRRTMNASECVARGCALQ 376 (852)
Q Consensus 331 ~I~~ViLvGG~sriP~v~~~l~~~fg----~~v~~~~n~deava~GAa~~ 376 (852)
++|.|+|.||.+..+.+.+.|++.+. ..+...-+-.+|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999999998888774 33455566778999998753
No 160
>PRK00976 hypothetical protein; Provisional
Probab=59.88 E-value=21 Score=38.85 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=38.3
Q ss_pred CccEEEEeCCCCChH--HHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhhhcC
Q 003056 331 DVHMVEVVGSSSRVP--AIIKILTEFFGKEPRRTMNASECVARGCALQCAILSP 382 (852)
Q Consensus 331 ~I~~ViLvGG~sriP--~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ls~ 382 (852)
+.+.|+|-||-++.+ .+.+.|++.+...+ ..-...+.++|||+.|..+..
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~~--a~LG~dAGaiGAA~iA~~i~~ 314 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKKV--LVLGKESAAIGLALIARDIFN 314 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhcccc--cccCCchHHHHHHHHHHHHhC
Confidence 478899999999998 78888988885432 222458899999998876544
No 161
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=59.53 E-value=8.1 Score=45.38 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=17.5
Q ss_pred EEEEEcCccceEEEEEECCc
Q 003056 3 VVGFDLGNESCIVAVARQRG 22 (852)
Q Consensus 3 viGID~GTt~s~va~~~~~~ 22 (852)
+||||+|||++++++++..+
T Consensus 4 ~lgiDiGTts~Ka~l~d~~G 23 (504)
T PTZ00294 4 IGSIDQGTTSTRFIIFDEKG 23 (504)
T ss_pred EEEEecCCCceEEEEECCCC
Confidence 89999999999999987543
No 162
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=58.92 E-value=89 Score=30.18 Aligned_cols=141 Identities=14% Similarity=0.149 Sum_probs=73.3
Q ss_pred eEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhh
Q 003056 195 NVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKV 274 (852)
Q Consensus 195 ~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~ 274 (852)
.||-+|-|-.+|-.++++..++.++++..+.-..-.+...-+++ .+|....+++-..
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~~~~g~i~t~~~~~~~~rl-----------------------~~I~~~l~~~i~~ 57 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYLASGVIRTSSDAPLPSRL-----------------------KTIYDGLNEVIDQ 57 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEEEEeeEEECCCCCCHHHHH-----------------------HHHHHHHHHHHHH
Confidence 37889999999999999998888887776522222121221111 1111222222221
Q ss_pred cCCCCcccEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----CCCccEEEEeC-CCCChHHHH
Q 003056 275 LSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLS-----VEDVHMVEVVG-SSSRVPAII 348 (852)
Q Consensus 275 LS~~~~~~i~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~-----~~~I~~ViLvG-G~sriP~v~ 348 (852)
+ .-..+-+|.++=... .+..+ .+..+...+..++...++. +..+... ++| |.+.=--|+
T Consensus 58 ~---~Pd~vaiE~~~~~~n---------~~s~~--~l~~~~Gvi~~~~~~~~i~v~e~~P~~vKk~-~tG~G~A~KeqV~ 122 (154)
T cd00529 58 F---QPDVVAIERVFFAKN---------PDSAL--KLGQARGALILALANRNLPVFEYTPNQVKKA-VTGYGKADKDQVQ 122 (154)
T ss_pred h---CCCEEEEEEhhcccC---------hHHHH--HHHHHHHHHHHHHHHcCCCEEEEccCeeEEE-EECCCCCCHHHHH
Confidence 1 112455554321111 11111 2344566666677776665 4445544 344 444555788
Q ss_pred HHHHhhcCCCCc-ccCCchhHHHhhH
Q 003056 349 KILTEFFGKEPR-RTMNASECVARGC 373 (852)
Q Consensus 349 ~~l~~~fg~~v~-~~~n~deava~GA 373 (852)
.+++..++.... ...|.-.|.|.+.
T Consensus 123 ~mv~~~l~~~~~~~~~d~aDAlaiA~ 148 (154)
T cd00529 123 HMVKRLLNLSEIPKPDDAADALAVAI 148 (154)
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence 999999985432 3334444444443
No 163
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=58.76 E-value=26 Score=42.87 Aligned_cols=48 Identities=13% Similarity=0.150 Sum_probs=37.7
Q ss_pred CccEEEEeCCCCChHHHHHHHHhhcC---CCCccc---CCchhHHHhhHHHhhh
Q 003056 331 DVHMVEVVGSSSRVPAIIKILTEFFG---KEPRRT---MNASECVARGCALQCA 378 (852)
Q Consensus 331 ~I~~ViLvGG~sriP~v~~~l~~~fg---~~v~~~---~n~deava~GAa~~aa 378 (852)
.++.|+|+||.....++++.|.+.++ .++..+ .-.|.++++|.|+.|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999988774 333222 3468999999988764
No 164
>PRK13410 molecular chaperone DnaK; Provisional
Probab=58.21 E-value=40 Score=41.02 Aligned_cols=68 Identities=7% Similarity=0.026 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHh
Q 003056 707 VIDQLAYCINSYREAALSSDPKF-DHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFC 785 (852)
Q Consensus 707 a~~~l~~~l~~~~~~~~~~~~~~-~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~ 785 (852)
+...+...|..++..+......| ..++++++..+...+++++.||.+. ++ .+++.+..++...+
T Consensus 530 ~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~-----------~~----~~~~~~~~~~~~~l 594 (668)
T PRK13410 530 KRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQD-----------DD----RELDLAVADLQEAL 594 (668)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcC-----------CH----HHHHHHHHHHHHHH
Confidence 44555666666666554322223 5689999999999999999999753 11 34555555555555
Q ss_pred hhhh
Q 003056 786 RPIM 789 (852)
Q Consensus 786 ~~l~ 789 (852)
..+.
T Consensus 595 ~~~~ 598 (668)
T PRK13410 595 YGLN 598 (668)
T ss_pred HHHH
Confidence 5544
No 165
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=56.09 E-value=34 Score=27.41 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=32.3
Q ss_pred HHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHHHHHcCCcce
Q 003056 126 KAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPL 168 (852)
Q Consensus 126 ~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~Aa~~AGl~~~ 168 (852)
.+....+.... ....++.|+.++..+|..+.+.|+..||...
T Consensus 5 ~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~ 46 (60)
T cd02640 5 RQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKSR 46 (60)
T ss_pred HHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCcee
Confidence 33444444322 4678999999999999999999999999753
No 166
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=55.97 E-value=8.1 Score=42.11 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=16.9
Q ss_pred ceEEEEEeCCceeEEEEEE
Q 003056 194 LNVAFVDIGHASLQVCIAG 212 (852)
Q Consensus 194 ~~vlv~D~GggT~dvsiv~ 212 (852)
.+++++||||.|||++++.
T Consensus 128 ~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCEEEEEcCccceeeEEec
Confidence 4599999999999999964
No 167
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=55.91 E-value=78 Score=32.39 Aligned_cols=55 Identities=13% Similarity=0.204 Sum_probs=37.1
Q ss_pred EecHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcC
Q 003056 297 FIKRDEFEQIS-APILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFG 356 (852)
Q Consensus 297 ~itr~efe~l~-~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg 356 (852)
.+|.+++.--+ +.+|.-+.++-++++..++ -+.|++|||-+.--.+|++...+..
T Consensus 224 ~~t~~DLCySLQEtvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~ 279 (336)
T KOG2708|consen 224 EVTKEDLCYSLQETVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCS 279 (336)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHH
Confidence 45555543222 2345555555666666554 3679999999999999999988873
No 168
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=55.63 E-value=16 Score=33.77 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=16.8
Q ss_pred EEEEEcCccceEEEEEECCc
Q 003056 3 VVGFDLGNESCIVAVARQRG 22 (852)
Q Consensus 3 viGID~GTt~s~va~~~~~~ 22 (852)
|++||||++.++++++..+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~ 20 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGS 20 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTE
T ss_pred CEEEEcCCCcEEEEEEEeCC
Confidence 68999999999999998754
No 169
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=55.03 E-value=3.3e+02 Score=30.04 Aligned_cols=53 Identities=21% Similarity=0.375 Sum_probs=37.9
Q ss_pred ecHHHHHHHHHHH----HHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhc
Q 003056 298 IKRDEFEQISAPI----LERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFF 355 (852)
Q Consensus 298 itr~efe~l~~~~----~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~f 355 (852)
+..++.+++|..+ ++-+....+++|+..+ ++.++++||-+...++|+++.+..
T Consensus 229 ~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 229 LNEEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHH
Confidence 3345555566544 4555555666666655 467999999999999999999876
No 170
>PLN02914 hexokinase
Probab=54.71 E-value=70 Score=37.17 Aligned_cols=58 Identities=14% Similarity=0.074 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHHcCC--cceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEe
Q 003056 149 TDLQRRAVIDAATIAGL--HPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGF 213 (852)
Q Consensus 149 ~~~qR~al~~Aa~~AGl--~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~ 213 (852)
...-.+.|.+|.+.-|+ +++.|+|+.++..++.++.. +...+-+=+|-||=-+.+-++
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~-------~~~~iGlIlGTGtNacY~E~~ 263 (490)
T PLN02914 204 GKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD-------DDVMVAVILGTGTNACYVERT 263 (490)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCC-------CCceEEEEEECCeeeEEEeec
Confidence 33344556666655554 57889999999887655432 223333336777655554443
No 171
>PRK13318 pantothenate kinase; Reviewed
Probab=54.46 E-value=12 Score=39.70 Aligned_cols=20 Identities=15% Similarity=0.383 Sum_probs=17.5
Q ss_pred EEEEEcCccceEEEEEECCc
Q 003056 3 VVGFDLGNESCIVAVARQRG 22 (852)
Q Consensus 3 viGID~GTt~s~va~~~~~~ 22 (852)
+++||+|+|+++++++.++.
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 68999999999999998543
No 172
>PRK07058 acetate kinase; Provisional
Probab=53.82 E-value=74 Score=35.74 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCC-ChHHHHHHHHhhcC
Q 003056 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSS-RVPAIIKILTEFFG 356 (852)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~s-riP~v~~~l~~~fg 356 (852)
.++-++.++.+.|-...... ..+|.|+++||-+ ..+.|++.|.+.++
T Consensus 297 A~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 297 ALDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 34445555555555444432 3599999999999 99999999998774
No 173
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=53.71 E-value=2.1e+02 Score=30.82 Aligned_cols=45 Identities=16% Similarity=0.005 Sum_probs=29.0
Q ss_pred HcCCcceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEE
Q 003056 162 IAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIA 211 (852)
Q Consensus 162 ~AGl~~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv 211 (852)
..|++ +.+.|+..|+|++-....... ....++++.+|.|- -.+++
T Consensus 95 ~~~~p-V~ieNDa~aaalaE~~~g~~~---~~~~~~~l~~gtGi-G~giv 139 (303)
T PRK13310 95 RLGRD-VRLDNDANCFALSEAWDDEFT---QYPLVMGLILGTGV-GGGLV 139 (303)
T ss_pred HHCCC-eEEeccHhHHHHHHhhhcccc---CCCcEEEEEecCce-EEEEE
Confidence 35886 579999999998754432211 24678888888653 34443
No 174
>PRK13321 pantothenate kinase; Reviewed
Probab=53.10 E-value=13 Score=39.46 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=17.2
Q ss_pred EEEEEcCccceEEEEEECC
Q 003056 3 VVGFDLGNESCIVAVARQR 21 (852)
Q Consensus 3 viGID~GTt~s~va~~~~~ 21 (852)
+|+||+|+|++++|++.++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 6899999999999999855
No 175
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=52.83 E-value=58 Score=39.28 Aligned_cols=63 Identities=13% Similarity=0.152 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhh
Q 003056 710 QLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCRPIM 789 (852)
Q Consensus 710 ~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~ 789 (852)
.+...|..++..+.... ..++.++++.+...+++++.||+.. ...+++.+.++|+..+.++.
T Consensus 535 ~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~---------------d~~~~~~~~~~l~~~~~~~~ 596 (616)
T PRK05183 535 EAERVLEALQAALAADG---DLLSAAERAAIDAAMAALREVAQGD---------------DADAIEAAIKALDKATQEFA 596 (616)
T ss_pred HHHHHHHHHHHHHHHhh---ccCCHHHHHHHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHHHHHHH
Confidence 34444444444442211 4578999999999999999999641 22689999999999999888
Q ss_pred c
Q 003056 790 T 790 (852)
Q Consensus 790 ~ 790 (852)
.
T Consensus 597 ~ 597 (616)
T PRK05183 597 A 597 (616)
T ss_pred H
Confidence 5
No 176
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=52.51 E-value=11 Score=44.55 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=17.5
Q ss_pred eEEEEEcCccceEEEEEECC
Q 003056 2 SVVGFDLGNESCIVAVARQR 21 (852)
Q Consensus 2 ~viGID~GTt~s~va~~~~~ 21 (852)
.+||||+|||++++++++..
T Consensus 4 ~~lgID~GTts~Ka~l~d~~ 23 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLN 23 (520)
T ss_pred EEEEEecCCCceEEEEECCC
Confidence 38999999999999998744
No 177
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=52.50 E-value=11 Score=36.84 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=17.5
Q ss_pred CeEEEEEcCccceEEEEEE
Q 003056 1 MSVVGFDLGNESCIVAVAR 19 (852)
Q Consensus 1 m~viGID~GTt~s~va~~~ 19 (852)
|-|||||-|++++..|+..
T Consensus 2 m~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIE 20 (164)
T ss_pred CEEEEEccccCceeEEEEE
Confidence 7899999999999999875
No 178
>PRK15027 xylulokinase; Provisional
Probab=52.29 E-value=10 Score=44.20 Aligned_cols=19 Identities=26% Similarity=0.538 Sum_probs=16.8
Q ss_pred EEEEEcCccceEEEEEECC
Q 003056 3 VVGFDLGNESCIVAVARQR 21 (852)
Q Consensus 3 viGID~GTt~s~va~~~~~ 21 (852)
+||||+|||++++++++..
T Consensus 2 ~lgID~GTts~Ka~l~d~~ 20 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNEQ 20 (484)
T ss_pred EEEEEecccceEEEEEcCC
Confidence 6999999999999998743
No 179
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=51.50 E-value=1.1e+02 Score=32.29 Aligned_cols=53 Identities=26% Similarity=0.371 Sum_probs=34.5
Q ss_pred CCccEEEEeCCCCChHH----HHHHHHhhc---C--CCCc---ccCCchhHHHhhHHHhhhhhcCC
Q 003056 330 EDVHMVEVVGSSSRVPA----IIKILTEFF---G--KEPR---RTMNASECVARGCALQCAILSPT 383 (852)
Q Consensus 330 ~~I~~ViLvGG~sriP~----v~~~l~~~f---g--~~v~---~~~n~deava~GAa~~aa~ls~~ 383 (852)
...+.|+|.|-.+|+|. |++.|++.| | ..+. .-....| .|.|||+.|..+++.
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~Ke-aA~GaAiiAnaiAGG 336 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKE-AAEGAAIIANAIAGG 336 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhh-hccchhhhhhhhcch
Confidence 45678999999999865 566777766 2 2221 1122333 578999888776654
No 180
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=51.14 E-value=54 Score=39.32 Aligned_cols=67 Identities=10% Similarity=0.070 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCc-c--cHHHHHHHHHH-HHHHhh
Q 003056 711 LAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPV-L--LLGDVRRKAEA-LDRFCR 786 (852)
Q Consensus 711 l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~-~--~~~di~~k~~~-l~~~~~ 786 (852)
+...+..++..+.. .-.+++.++++.+...+++++.||+.. |+. + ...+++..++. |++.|+
T Consensus 514 ~~~~~~~~~~~~~~---~~~~l~~~~~~~i~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (595)
T PRK01433 514 AEALIFNIERAIAE---LTTLLSESEISIINSLLDNIKEAVHAR-----------DIILINNSIKEFKSKIKKSMDTKLN 579 (595)
T ss_pred HHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445555544432 123578899999999999999999632 111 0 22345555555 555566
Q ss_pred hhhcC
Q 003056 787 PIMTK 791 (852)
Q Consensus 787 ~l~~k 791 (852)
++++|
T Consensus 580 ~~~~k 584 (595)
T PRK01433 580 IIIND 584 (595)
T ss_pred HHHHH
Confidence 66544
No 181
>PLN02295 glycerol kinase
Probab=50.55 E-value=12 Score=44.09 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=17.2
Q ss_pred eEEEEEcCccceEEEEEECC
Q 003056 2 SVVGFDLGNESCIVAVARQR 21 (852)
Q Consensus 2 ~viGID~GTt~s~va~~~~~ 21 (852)
.+||||+|||++++++++..
T Consensus 1 ~vlgID~GTts~Ka~l~d~~ 20 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRD 20 (512)
T ss_pred CEEEEecCCCceEEEEECCC
Confidence 37999999999999998643
No 182
>PRK04123 ribulokinase; Provisional
Probab=49.71 E-value=15 Score=43.75 Aligned_cols=17 Identities=29% Similarity=0.626 Sum_probs=16.2
Q ss_pred EEEEEcCccceEEEEEE
Q 003056 3 VVGFDLGNESCIVAVAR 19 (852)
Q Consensus 3 viGID~GTt~s~va~~~ 19 (852)
+||||+|||++++++++
T Consensus 5 ~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 5 VIGLDFGTDSVRALLVD 21 (548)
T ss_pred EEEEecCCCceEEEEEE
Confidence 89999999999999987
No 183
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=49.10 E-value=16 Score=43.34 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=16.7
Q ss_pred eEEEEEcCccceEEEEEE
Q 003056 2 SVVGFDLGNESCIVAVAR 19 (852)
Q Consensus 2 ~viGID~GTt~s~va~~~ 19 (852)
.+||||+||+++++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 489999999999999988
No 184
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=49.10 E-value=15 Score=43.67 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=16.8
Q ss_pred EEEEEcCccceEEEEEECC
Q 003056 3 VVGFDLGNESCIVAVARQR 21 (852)
Q Consensus 3 viGID~GTt~s~va~~~~~ 21 (852)
+||||+|||++++++++..
T Consensus 2 ~lgID~GTts~Ka~l~d~~ 20 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDST 20 (541)
T ss_pred EEEEEecCcCEEEEEEcCC
Confidence 7999999999999998643
No 185
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=48.39 E-value=64 Score=32.64 Aligned_cols=10 Identities=0% Similarity=-0.081 Sum_probs=7.1
Q ss_pred HHHHhHHHhh
Q 003056 633 YVYDMRNKLC 642 (852)
Q Consensus 633 ~iy~~r~~L~ 642 (852)
++|.+++.|.
T Consensus 14 ~l~~v~~~iK 23 (205)
T PF12238_consen 14 ALKKVLDLIK 23 (205)
T ss_pred HHHHHHHHHc
Confidence 4577888775
No 186
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=46.44 E-value=17 Score=42.55 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=17.3
Q ss_pred eEEEEEcCccceEEEEEECC
Q 003056 2 SVVGFDLGNESCIVAVARQR 21 (852)
Q Consensus 2 ~viGID~GTt~s~va~~~~~ 21 (852)
.+||||+|||++++++++..
T Consensus 2 ~~lgiDiGtt~iKa~l~d~~ 21 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDKD 21 (493)
T ss_pred eEEEEecCCCceEEEEECCC
Confidence 37999999999999998744
No 187
>PRK00047 glpK glycerol kinase; Provisional
Probab=46.23 E-value=17 Score=42.57 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=17.3
Q ss_pred eEEEEEcCccceEEEEEECC
Q 003056 2 SVVGFDLGNESCIVAVARQR 21 (852)
Q Consensus 2 ~viGID~GTt~s~va~~~~~ 21 (852)
.+||||+|||++++++++..
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~ 25 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHD 25 (498)
T ss_pred EEEEEecCCCceEEEEECCC
Confidence 37999999999999998643
No 188
>PLN02377 3-ketoacyl-CoA synthase
Probab=44.94 E-value=50 Score=38.56 Aligned_cols=73 Identities=12% Similarity=0.186 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEE-eCCCCChHHHHHHHHhhcCCC---CcccCCchhHHHhhHH
Q 003056 302 EFEQISAPILERVKRPLEKALAETGLSVEDVHMVEV-VGSSSRVPAIIKILTEFFGKE---PRRTMNASECVARGCA 374 (852)
Q Consensus 302 efe~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViL-vGG~sriP~v~~~l~~~fg~~---v~~~~n~deava~GAa 374 (852)
.++...++...-+...++++|+++|+++++||.|++ +.|....|.+-.+|.+.+|.. ....++..-|.+...+
T Consensus 164 ~~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr~~v~afdL~gmGCsggl~a 240 (502)
T PLN02377 164 SMAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIA 240 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCCCCCeEEecccchhhHHHHH
Confidence 345555556666677888999999999999999977 444456899999999999853 2344554444433333
No 189
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=44.53 E-value=1.5e+02 Score=31.19 Aligned_cols=118 Identities=17% Similarity=0.114 Sum_probs=0.0
Q ss_pred hhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcc
Q 003056 173 ETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKI 252 (852)
Q Consensus 173 Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~ 252 (852)
+-.++|++..... +..++|+|+|.-+|=-.+ ..+..++||.
T Consensus 108 DR~~n~vaA~~~~-------~~~~vVVD~GTA~Tid~v------------~~~~~~lGG~-------------------- 148 (251)
T COG1521 108 DRIANAVAAYHKY-------GKAVVVVDFGTATTIDLV------------DEGGRYLGGA-------------------- 148 (251)
T ss_pred HHHHHHHHHHHHc-------CCcEEEEEcCCeEEEEEE------------cCCCcEeeeE--------------------
Q ss_pred cccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Q 003056 253 DVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVEDV 332 (852)
Q Consensus 253 ~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~I 332 (852)
+......+.+-+. ...+|.-...-......+. ++..+.+...++-.....|+..+++.......=
T Consensus 149 -I~PGi~l~~~aL~-~~aa~lp~~~~~~~~~~~g-------------k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~ 213 (251)
T COG1521 149 -ILPGITLSFEALF-ARAAKLPRVEIARPESVPG-------------KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGG 213 (251)
T ss_pred -eccCHHHHHHHHH-HHHhcCCcccccCccccCC-------------cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCC
Q ss_pred cEEEEeCCCCCh
Q 003056 333 HMVEVVGSSSRV 344 (852)
Q Consensus 333 ~~ViLvGG~sri 344 (852)
..++++||.+++
T Consensus 214 ~~~vltGg~~~~ 225 (251)
T COG1521 214 DAVVLTGGLAKL 225 (251)
T ss_pred CeEEEeCCchHh
No 190
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=43.00 E-value=1.1e+02 Score=34.81 Aligned_cols=56 Identities=23% Similarity=0.435 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcCCC
Q 003056 303 FEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFGKE 358 (852)
Q Consensus 303 fe~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg~~ 358 (852)
++.+.+-+++.+..+|.+++.++++..++|..+.++|-.+..-.+.-.=-+.++..
T Consensus 55 ~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl~~~~L~~~ 110 (412)
T PF14574_consen 55 LEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGLDPEGLGRA 110 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT---GGGSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCCChHHhccC
Confidence 55666677888899999999999999999999999998877666655544445433
No 191
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=42.70 E-value=1.8e+02 Score=35.39 Aligned_cols=69 Identities=12% Similarity=0.138 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCcccHHHHHHHHH
Q 003056 710 QLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALP-KYAAPVLLLGDVRRKAE 779 (852)
Q Consensus 710 ~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~-~~~dP~~~~~di~~k~~ 779 (852)
.++..|..+++.++- .-.|..|-..-+..|..++++...++-+..++--+.| .|.-|.|+...|-.++.
T Consensus 106 ~vK~~L~~vK~qvei-AmE~~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le~Ive~~~ 175 (683)
T PF08580_consen 106 DVKKTLISVKKQVEI-AMEWEELWNDVLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELETIVEEMP 175 (683)
T ss_pred HHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHHHHHHhcc
Confidence 445555555444422 1123335567788888888888999888888777777 77788888888877763
No 192
>PF13941 MutL: MutL protein
Probab=42.69 E-value=18 Score=41.38 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=24.9
Q ss_pred eEEEEEcCccceEEEEEE--CCceEEEeCCCCCccceEEE
Q 003056 2 SVVGFDLGNESCIVAVAR--QRGIDVVLNDESKRETPSIV 39 (852)
Q Consensus 2 ~viGID~GTt~s~va~~~--~~~~~iv~n~~~~r~~Ps~V 39 (852)
.++.+||||||+++..++ .+...++- .-..||.|
T Consensus 1 ~~L~~DiGST~Tk~~l~d~~~~~~~~ig----~a~apTTv 36 (457)
T PF13941_consen 1 DVLVVDIGSTYTKVTLFDLVDGEPRLIG----QAEAPTTV 36 (457)
T ss_pred CEEEEEeCCcceEEeEEeccCCccEEEE----EEeCCCCc
Confidence 378999999999999988 66666662 23345555
No 193
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=41.69 E-value=3.3e+02 Score=29.69 Aligned_cols=99 Identities=15% Similarity=0.089 Sum_probs=57.2
Q ss_pred cEEEEEcCCCCHHHHHHHHHHHHHcCCcceeee---chhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeC
Q 003056 139 DCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLF---HETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK 215 (852)
Q Consensus 139 ~~VitVP~~f~~~qR~al~~Aa~~AGl~~~~li---~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~ 215 (852)
...+|-|.--....|.-+....-. -++|..|. ..-.|.|+.| ....... ..-.-+|+|-|-|-|-+-.+.-.
T Consensus 108 ~fLlteppln~penreytaeImfE-sfnvpglyiAVqavLALaasw--ts~~v~e-r~ltG~VidsGdgvThvipvaEg- 182 (415)
T KOG0678|consen 108 YFLLTEPPLNQPENREYTAEIMFE-SFNVPGLYIAVQAVLALAASW--TSRQVGE-RFLTGIVIDSGDGVTHVIPVAEG- 182 (415)
T ss_pred eEEecCCCCCCchhhHHHHHhhhh-hccCchHHHHHHHHHHHHHHH--HHhhhhh-heeeeEEEecCCCeeEEEEeecc-
Confidence 467888877777777766554311 24555443 2222333333 2221111 12345799999998877665322
Q ss_pred CeEEEEEEeCCCCcccHHHHHHHHHHHHH
Q 003056 216 GQLKILGHSFDRSVGGRDFDEVLFQHFAA 244 (852)
Q Consensus 216 ~~~~vl~~~~d~~lGG~~~D~~l~~~l~~ 244 (852)
+-+.++-....+.|++++.-+...+.+
T Consensus 183 --yVigScik~iPiagrdiT~fiQ~llRe 209 (415)
T KOG0678|consen 183 --YVIGSCIKHIPIAGRDITYFIQQLLRE 209 (415)
T ss_pred --eEEeeeeccccccCCchhHHHHHHhhC
Confidence 224443456789999999888777643
No 194
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=40.12 E-value=72 Score=36.70 Aligned_cols=64 Identities=14% Similarity=0.085 Sum_probs=44.5
Q ss_pred cCCCCHHHHHHHHHHHHHcCCc---ceeeechhHHHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEEEeeC
Q 003056 145 PVYFTDLQRRAVIDAATIAGLH---PLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKK 215 (852)
Q Consensus 145 P~~f~~~qR~al~~Aa~~AGl~---~~~li~Ep~AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~ 215 (852)
+.-....--+.+.+|.+.-|+. ++.++|+.++..++..+. .+.+++-+=+|.||=-+-+.+...
T Consensus 186 ~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~-------~~~~~igvI~GTGtNacY~e~~~~ 252 (474)
T KOG1369|consen 186 TDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYE-------DPNCEIGVIFGTGTNACYMEDMRN 252 (474)
T ss_pred hhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceec-------CCCcEEEEEECCCccceeeeeccc
Confidence 3333445557788888888876 788999999887655432 246677777899987776666653
No 195
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=40.02 E-value=76 Score=33.65 Aligned_cols=49 Identities=10% Similarity=0.081 Sum_probs=38.1
Q ss_pred CCCCCccEEEEeCCCCChHHHHHHHHhhcC----CCCcccCCchhHHHhhHHH
Q 003056 327 LSVEDVHMVEVVGSSSRVPAIIKILTEFFG----KEPRRTMNASECVARGCAL 375 (852)
Q Consensus 327 ~~~~~I~~ViLvGG~sriP~v~~~l~~~fg----~~v~~~~n~deava~GAa~ 375 (852)
.-...+|.|+|+||.++...+-++|.++.. .-+...-|-.+|.|.|+..
T Consensus 292 vL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 292 VLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred hcCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 345679999999999999999999998874 2234455677889999863
No 196
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.14 E-value=66 Score=29.89 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=19.4
Q ss_pred HHHHHhhhcCCCccHHHHHHHHH
Q 003056 663 ETEDWLYEDGEDETKGVYVAKLE 685 (852)
Q Consensus 663 e~~~WL~~dg~~a~~~~~~~kl~ 685 (852)
..++||++|+...|++.|++|..
T Consensus 90 knE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 90 KNEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred chhhhhhccCCccCHHHHHHHhh
Confidence 45789999999999999987754
No 197
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=38.52 E-value=1.9e+02 Score=27.96 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=28.3
Q ss_pred HHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHH
Q 003056 686 ELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYRE 720 (852)
Q Consensus 686 ~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~ 720 (852)
-|.-+..|+..++.+ .+..|++.|++++..+.+
T Consensus 12 ~L~~li~Pvl~eL~~--~d~~A~q~Lr~Af~kAE~ 44 (154)
T PF06840_consen 12 ALQCLIRPVLDELEQ--KDSDAIQTLRAAFTKAEK 44 (154)
T ss_dssp HHHHTHHHHHHHHHT--THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHH
Confidence 478889999999988 677799999999988875
No 198
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=38.47 E-value=1.3e+02 Score=29.39 Aligned_cols=95 Identities=18% Similarity=0.109 Sum_probs=46.3
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHHhcCC
Q 003056 647 DFVTDSERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAALSSD 726 (852)
Q Consensus 647 ~~~~~~er~~i~~~l~e~~~WL~~dg~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~ 726 (852)
+.+++++...+...+.++.+=|..- ......+...|..|.+.. +.... ...+..|.+.+......+....
T Consensus 67 ~~~s~eel~~ld~ei~~L~~el~~l--~~~~k~l~~eL~~L~~~~-t~~el-------~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 67 EVPSPEELAELDAEIKELREELAEL--KKEVKSLEAELASLSSEP-TNEEL-------REEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCC-CHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777766666665544331 112222333333333322 11111 2333344444444433333222
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHH
Q 003056 727 PKFDHIDIAEKQKVLNECADAEAWV 751 (852)
Q Consensus 727 ~~~~~~~~~e~~~v~~~~~~~~~Wl 751 (852)
.....+++++++.+..........|
T Consensus 137 ~~~~~vs~ee~~~~~~~~~~~~k~w 161 (169)
T PF07106_consen 137 SGSKPVSPEEKEKLEKEYKKWRKEW 161 (169)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2344589999999998876555444
No 199
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=38.17 E-value=26 Score=33.98 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=15.7
Q ss_pred EEEEEcCccceEEEEEE
Q 003056 3 VVGFDLGNESCIVAVAR 19 (852)
Q Consensus 3 viGID~GTt~s~va~~~ 19 (852)
|||||.|++++..|+..
T Consensus 2 ILGIDPGl~~~G~av~~ 18 (154)
T cd00529 2 ILGIDPGSRNTGYGVIE 18 (154)
T ss_pred EEEEccCcCceEEEEEE
Confidence 89999999999999875
No 200
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=37.98 E-value=5.5e+02 Score=27.77 Aligned_cols=64 Identities=13% Similarity=0.167 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCCh-HHHHHHHHhhcCCCCcccCCchhHHHhhHHHhhhh
Q 003056 309 PILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRV-PAIIKILTEFFGKEPRRTMNASECVARGCALQCAI 379 (852)
Q Consensus 309 ~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sri-P~v~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ 379 (852)
.++++...-|...++.-.+ ......+.|.||.... |++.....+..-.+. .-.+..||.+.|..
T Consensus 227 ~Il~~aa~~i~~~~~~l~~-~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~~~------~~D~~~GA~~~A~~ 291 (301)
T COG2971 227 RILKEAAAYIATLLEALSI-FNGSEKLSLLGGLAPSYPYYLSLFRRALLVPP------IGDALSGAVLLALG 291 (301)
T ss_pred HHHHHHHHHHHHHHHHHhc-ccCCceEEEeccccccchhhHHHHHHHhcCCc------cccHHHHHHHHHHH
Confidence 4566666666666665432 2345679999999876 777777776653322 44567788777643
No 201
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=37.66 E-value=57 Score=26.16 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=26.6
Q ss_pred cEEEEEcCCCCHHHHHHHHHHHHHcCCcce
Q 003056 139 DCCIGIPVYFTDLQRRAVIDAATIAGLHPL 168 (852)
Q Consensus 139 ~~VitVP~~f~~~qR~al~~Aa~~AGl~~~ 168 (852)
.-.++.|+.++..+|+.+...|...||...
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 566778999999999999999999999754
No 202
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=37.58 E-value=4.4e+02 Score=26.46 Aligned_cols=101 Identities=22% Similarity=0.202 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhcCCCc
Q 003056 596 GGMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGEDE 675 (852)
Q Consensus 596 ~~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~dg~~a 675 (852)
..++..........+..+ ......++.-+-.++..|...-...-..++|..+.+.+.+++.
T Consensus 57 WsFps~~~~~~~~~~~~l----------~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~--------- 117 (188)
T PF03962_consen 57 WSFPSQAKQKRQNKLEKL----------QKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKK--------- 117 (188)
T ss_pred EecChHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH---------
Confidence 356666666555554444 2223333333444444443222222333677777777766543
Q ss_pred cHHHHHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHHhcCCCC
Q 003056 676 TKGVYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAALSSDPK 728 (852)
Q Consensus 676 ~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~ 728 (852)
++.+|++-.. .-...=|+.++.++..+..++..++.|.+.
T Consensus 118 -------~~~~l~~el~------~~~~~Dp~~i~~~~~~~~~~~~~anrwTDN 157 (188)
T PF03962_consen 118 -------ELKELKKELE------KYSENDPEKIEKLKEEIKIAKEAANRWTDN 157 (188)
T ss_pred -------HHHHHHHHHH------HHHhcCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222222221 111235778888888888888777665543
No 203
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=37.39 E-value=5.2e+02 Score=27.30 Aligned_cols=18 Identities=17% Similarity=0.409 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 003056 651 DSERELFTSKLQETEDWL 668 (852)
Q Consensus 651 ~~er~~i~~~l~e~~~WL 668 (852)
+.|..+....|+.+..||
T Consensus 152 e~El~~A~~LL~~v~~~~ 169 (264)
T PF06008_consen 152 EDELKEAEDLLSRVQKWF 169 (264)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455556666666666665
No 204
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=37.20 E-value=89 Score=24.97 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=26.6
Q ss_pred cEEEEEcCCCCHHHHHHHHHHHHHcCCcce
Q 003056 139 DCCIGIPVYFTDLQRRAVIDAATIAGLHPL 168 (852)
Q Consensus 139 ~~VitVP~~f~~~qR~al~~Aa~~AGl~~~ 168 (852)
...+..|+.++..||..+.+.|+..||...
T Consensus 17 ~~~l~F~p~ls~~eR~~vH~lA~~~gL~s~ 46 (60)
T cd02641 17 ATELEFPPTLSSHDRLLVHELAEELGLRHE 46 (60)
T ss_pred cCcEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 367899999999999999999999998653
No 205
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=37.19 E-value=2.1e+02 Score=32.98 Aligned_cols=31 Identities=23% Similarity=0.515 Sum_probs=25.2
Q ss_pred CCCC-CCCceEEEEEeCCceeEEEEEEeeCCe
Q 003056 187 DLPE-NDQLNVAFVDIGHASLQVCIAGFKKGQ 217 (852)
Q Consensus 187 ~~~~-~~~~~vlv~D~GggT~dvsiv~~~~~~ 217 (852)
++|. ++...++.+|+||..+-|..+.+.++.
T Consensus 78 ~lP~G~E~G~~lalDLGGTn~Rv~~v~L~g~~ 109 (474)
T KOG1369|consen 78 DLPDGTEKGKFLALDLGGTNFRVLLVKLGGGR 109 (474)
T ss_pred cCCCCCcCCCEEEEecCCCceEEEEEEecCCc
Confidence 3444 246789999999999999999999873
No 206
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=36.83 E-value=43 Score=30.71 Aligned_cols=45 Identities=29% Similarity=0.564 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChH--HHHHHHHhhcC
Q 003056 312 ERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVP--AIIKILTEFFG 356 (852)
Q Consensus 312 ~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP--~v~~~l~~~fg 356 (852)
..+...|+++|+++++.+.+|+.|...|-++..- .=.+.|.+.|+
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~ 71 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFG 71 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhc
Confidence 4556779999999999999999999999887763 33456778886
No 207
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=36.51 E-value=2.5e+02 Score=26.99 Aligned_cols=29 Identities=14% Similarity=0.248 Sum_probs=24.1
Q ss_pred EEEEEeCCceeEEEEEEeeCCeEEEEEEe
Q 003056 196 VAFVDIGHASLQVCIAGFKKGQLKILGHS 224 (852)
Q Consensus 196 vlv~D~GggT~dvsiv~~~~~~~~vl~~~ 224 (852)
||-+|-|-.+|-.++++..++.++.+.++
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~G 29 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDYG 29 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEeC
Confidence 57899999999999999998888888776
No 208
>PLN02902 pantothenate kinase
Probab=36.33 E-value=3.2e+02 Score=33.94 Aligned_cols=48 Identities=13% Similarity=0.023 Sum_probs=30.4
Q ss_pred CCccEEEEeCCCCC-----hHHHHHHHHhhcC---CCCcccCCchhHHHhhHHHhhh
Q 003056 330 EDVHMVEVVGSSSR-----VPAIIKILTEFFG---KEPRRTMNASECVARGCALQCA 378 (852)
Q Consensus 330 ~~I~~ViLvGG~sr-----iP~v~~~l~~~fg---~~v~~~~n~deava~GAa~~aa 378 (852)
..|+.|+++|+.-| |..+...+. +++ .+....-+--...|+||.+...
T Consensus 345 ~~ikrIvF~G~fIr~h~~tm~~ls~Ai~-fwSkg~~~a~FlrHeGylGAlGafl~~~ 400 (876)
T PLN02902 345 FGLKRIFFGGFFIRGHAYTMDTISFAVH-FWSKGEAQAMFLRHEGFLGALGAFMSYE 400 (876)
T ss_pred cCCCEEEEecceecCCcchHHHHHHHHH-HhcCCceEEEEecccchhHHHHHHhcCC
Confidence 46888999998866 333444444 443 3334444566788999987654
No 209
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=36.30 E-value=1.8e+02 Score=35.01 Aligned_cols=45 Identities=9% Similarity=0.102 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhhc
Q 003056 731 HIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCRPIMT 790 (852)
Q Consensus 731 ~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~ 790 (852)
+++.+++..+...+++++.||.+. | ..+++.+.++|...+..++.
T Consensus 537 ~~~~~~~~~~~~~l~~~~~~l~~~-----------~----~~~~~~~~~~l~~~~~~~~~ 581 (599)
T TIGR01991 537 LLSEDERAAIDAAMEALQKALQGD-----------D----ADAIKAAIEALEEATDNFAA 581 (599)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcC-----------C----HHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999642 1 26788889999998888774
No 210
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=36.09 E-value=3.6e+02 Score=26.38 Aligned_cols=148 Identities=17% Similarity=0.153 Sum_probs=78.9
Q ss_pred eEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhh
Q 003056 195 NVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKV 274 (852)
Q Consensus 195 ~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~ 274 (852)
.||=+|-|-..|-.++++..++.+.++.++.-..-+...+-.+|.. ..+.+...
T Consensus 3 ~iLGIDPgl~~tG~avi~~~~~~~~~~~~G~i~t~~~~~~~~Rl~~--------------------------I~~~l~~~ 56 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEVEGRRLSYVASGVIRTPSDLDLPERLKQ--------------------------IYDGLSEL 56 (164)
T ss_pred EEEEEccccCceeEEEEEecCCeEEEEEeeEEECCCCCCHHHHHHH--------------------------HHHHHHHH
Confidence 5888999999999999998877777776652222222222233222 22222222
Q ss_pred cCCCCcccEEEecccCCcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-----CccEEEEeC-CCCChHHHH
Q 003056 275 LSANPEAPLNIECLMEEKDVRGFIKRDEFEQISAPILERVKRPLEKALAETGLSVE-----DVHMVEVVG-SSSRVPAII 348 (852)
Q Consensus 275 LS~~~~~~i~ie~l~~~~d~~~~itr~efe~l~~~~~~~i~~~i~~~l~~a~~~~~-----~I~~ViLvG-G~sriP~v~ 348 (852)
+....-..+.+|.++=..+. ... -.+-.....+..++...++... .|... ++| |.+.=--|+
T Consensus 57 i~~~~Pd~vaiE~~f~~~n~---------~sa--~~l~~arGvi~la~~~~~ipv~ey~P~~VKk~-vtG~G~A~K~qV~ 124 (164)
T PRK00039 57 IDEYQPDEVAIEEVFFNKNP---------QSA--LKLGQARGVAILAAAQRGLPVAEYTPLQVKKA-VVGYGRADKEQVQ 124 (164)
T ss_pred HHHhCCCEEEEehhhhccCh---------HHH--HHHHHHHHHHHHHHHHcCCCEEEECHHHhhhh-hcCCCCCCHHHHH
Confidence 22111123445543211111 111 1233455667777777776533 34433 344 444455788
Q ss_pred HHHHhhcCCCCcccCCchhHHHhhHHHhhhhhc
Q 003056 349 KILTEFFGKEPRRTMNASECVARGCALQCAILS 381 (852)
Q Consensus 349 ~~l~~~fg~~v~~~~n~deava~GAa~~aa~ls 381 (852)
.+++.+++... ...+.|++=|++.|+..+...
T Consensus 125 ~mv~~~l~l~~-~~~~~D~aDAlAiA~~h~~~~ 156 (164)
T PRK00039 125 HMVKRLLNLPE-IPKPDDAADALAIAICHAHRR 156 (164)
T ss_pred HHHHHHhCCCC-CCCCCCHHHHHHHHHHHHhhc
Confidence 99999998543 223346676777776665443
No 211
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=35.42 E-value=5.3e+02 Score=27.00 Aligned_cols=90 Identities=18% Similarity=0.216 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHhhhcC--CCccHHHHHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHHhcCCCCCC
Q 003056 653 ERELFTSKLQETEDWLYEDG--EDETKGVYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAALSSDPKFD 730 (852)
Q Consensus 653 er~~i~~~l~e~~~WL~~dg--~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~ 730 (852)
....|...|.++..-+..+- -..--..+.+||.++.....-... .|...|-..+..|...|..+.......++.|-
T Consensus 122 ~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~--~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f~ 199 (247)
T PF06705_consen 122 LNQELVRELNELQEAFENERNEREEREENILKRLEEEENRLQEKIE--KEKNTRESKLSELRSELEEVKRRREKGDEQFQ 199 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34455555666655554431 001112333333333333322222 45667777788888877777665555555554
Q ss_pred CCCHHHHHHHHHHH
Q 003056 731 HIDIAEKQKVLNEC 744 (852)
Q Consensus 731 ~~~~~e~~~v~~~~ 744 (852)
.+.-+|+..+.+.+
T Consensus 200 ~~v~~Ei~~lk~~l 213 (247)
T PF06705_consen 200 NFVLEEIAALKNAL 213 (247)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555554
No 212
>PLN02669 xylulokinase
Probab=35.32 E-value=33 Score=40.85 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhHHHhh
Q 003056 624 KDRKNAVEAYVYDMRNKLC 642 (852)
Q Consensus 624 ~~akN~LEs~iy~~r~~L~ 642 (852)
+.+|.-+|+..|.+|..++
T Consensus 420 ~~~RAvlEg~a~~~r~~~~ 438 (556)
T PLN02669 420 SEVRAIIEGQFLSMRAHAE 438 (556)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999986
No 213
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=35.16 E-value=84 Score=24.83 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCcCcEEEEEcCCCCHHHHHHHHHHHHHcCCcc
Q 003056 124 NLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHP 167 (852)
Q Consensus 124 ~l~~~a~~~~~~~~~~~VitVP~~f~~~qR~al~~Aa~~AGl~~ 167 (852)
.+++..+.++... .-.++.|+ ++..+|..+.+.|...||..
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 3444444554333 45679999 89999999999999998864
No 214
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=35.07 E-value=1.8e+02 Score=28.32 Aligned_cols=71 Identities=20% Similarity=0.293 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhccchHHHHHHhhh------cchHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHH
Q 003056 679 VYVAKLEELKKQGDPIEERYKEFT------DRSSVIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEA 749 (852)
Q Consensus 679 ~~~~kl~~L~~~~~pi~~R~~e~~------~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~ 749 (852)
.|.+|++.|++.+.-+..-+.+.. +.-+.+..|++.+..++..+.+...--.|++.+|+..|.+.....-.
T Consensus 90 ~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~ 166 (201)
T KOG4603|consen 90 ALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCK 166 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 345566666665555544443332 22233444444455555555554556679999999999988866533
No 215
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=34.71 E-value=55 Score=31.23 Aligned_cols=20 Identities=15% Similarity=0.325 Sum_probs=18.0
Q ss_pred CeEEEEEcCccceEEEEEEC
Q 003056 1 MSVVGFDLGNESCIVAVARQ 20 (852)
Q Consensus 1 m~viGID~GTt~s~va~~~~ 20 (852)
|.|++||+|+-|...++...
T Consensus 1 mii~sIDiGikNlA~~iie~ 20 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEF 20 (143)
T ss_pred CeEEEEecCCCceeEEEEEc
Confidence 88999999999999988763
No 216
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=34.63 E-value=8.2e+02 Score=29.15 Aligned_cols=117 Identities=14% Similarity=0.171 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhHHHhhh---hhhcCCC--HHHHHHHHHHHHHHHHHhhhcCCC
Q 003056 600 PVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYDMRNKLCD---KYQDFVT--DSERELFTSKLQETEDWLYEDGED 674 (852)
Q Consensus 600 ~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~L~~---~~~~~~~--~~er~~i~~~l~e~~~WL~~dg~~ 674 (852)
.+++..+...+..+...+..-| .+...|......+|..|.. .|...+. +...+.+....++..+|...-...
T Consensus 114 e~~i~~i~~~l~~L~~~e~~nr---~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~ 190 (560)
T PF06160_consen 114 EEDIKEILDELDELLESEEKNR---EEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDYL 190 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 4456666666666655554333 3444555555667777742 3444443 556777777888888888642222
Q ss_pred ---ccHHHHHHHHHHHHhccchHHHHHHh-hhcchHHHHHHHHHHHHHH
Q 003056 675 ---ETKGVYVAKLEELKKQGDPIEERYKE-FTDRSSVIDQLAYCINSYR 719 (852)
Q Consensus 675 ---a~~~~~~~kl~~L~~~~~pi~~R~~e-~~~rp~a~~~l~~~l~~~~ 719 (852)
-....+...+..|+..+..|=.-+.+ ....|..++.|+.....+.
T Consensus 191 ~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~ 239 (560)
T PF06160_consen 191 EAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREME 239 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 22345666777777777777777777 4478888888877655544
No 217
>PRK13331 pantothenate kinase; Reviewed
Probab=34.36 E-value=39 Score=35.59 Aligned_cols=22 Identities=9% Similarity=-0.016 Sum_probs=19.1
Q ss_pred CeEEEEEcCccceEEEEEECCc
Q 003056 1 MSVVGFDLGNESCIVAVARQRG 22 (852)
Q Consensus 1 m~viGID~GTt~s~va~~~~~~ 22 (852)
|-++.||+|+|++++++++++.
T Consensus 7 ~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 7 NEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CcEEEEEeCCCcEEEEEEECCE
Confidence 4689999999999999998654
No 218
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=34.35 E-value=2.3e+02 Score=33.11 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=18.3
Q ss_pred HHHhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhc
Q 003056 638 RNKLCDKYQDFVTDSERELFTSKLQETEDWLYED 671 (852)
Q Consensus 638 r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~d 671 (852)
|++|+.+++ .|..+|...-+++..|+..+
T Consensus 40 keK~e~DLK-----kEIKKLQRlRdQIKtW~ss~ 68 (575)
T KOG2150|consen 40 KEKLESDLK-----KEIKKLQRLRDQIKTWQSSS 68 (575)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHhhhccc
Confidence 455554442 35566677778888999653
No 219
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=34.16 E-value=9.5e+02 Score=30.65 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=32.3
Q ss_pred HHHHHHHHHH---HHHHHHHHhhcCCCCCCCcc---------cHHHHHHHHHHHHHHhhhh
Q 003056 740 VLNECADAEA---WVREKKQQQDALPKYAAPVL---------LLGDVRRKAEALDRFCRPI 788 (852)
Q Consensus 740 v~~~~~~~~~---Wl~~~~~~q~~~~~~~dP~~---------~~~di~~k~~~l~~~~~~l 788 (852)
..+.+...+. -+.+....+...+.+..|-. ++++|...++.|.+.|...
T Consensus 823 ~l~~l~~~E~~~~~~e~~~~e~~~ka~~~cp~~~~ei~~~~~~~~eik~ei~rlk~~i~~~ 883 (1074)
T KOG0250|consen 823 RLEELKQKEVEKVNLEEPRAEEDQKARTECPEEGIEIEALGKTVAEIKREIKRLKRQIQMC 883 (1074)
T ss_pred hhHHHHHHHHHHHhhhcchhhhCchhhhhCccccchhhcccchHHHHHHHHHHHHHHHHHH
Confidence 4444444433 34555566667777777777 4788888888888887753
No 220
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=33.67 E-value=2e+02 Score=28.02 Aligned_cols=89 Identities=17% Similarity=0.214 Sum_probs=53.3
Q ss_pred ecHHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEcCCCCHHH----------------HHHHHHHHHHcCCcceeeechhH
Q 003056 112 FTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQ----------------RRAVIDAATIAGLHPLRLFHETT 175 (852)
Q Consensus 112 ~~~eel~a~~L~~l~~~a~~~~~~~~~~~VitVP~~f~~~q----------------R~al~~Aa~~AGl~~~~li~Ep~ 175 (852)
.++++++..+...+.+.....- .. .+.|++|..+.... .+.+.+ ..+++ +.+.|+..
T Consensus 30 ~~~~~~~~~l~~~i~~~~~~~~-~~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~---~~~~p-v~i~Nd~~ 102 (179)
T PF00480_consen 30 TSPEELLDALAELIERLLADYG-RS--GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEE---RFGVP-VIIENDAN 102 (179)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHT-CE--EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHH---HHTSE-EEEEEHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcc-cc--cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhc---ccceE-EEEecCCC
Confidence 3566677766666666554432 12 55566665554432 123332 33665 47999999
Q ss_pred HHHHHhhhhcCCCCCCCCceEEEEEeCCceeEEEEE
Q 003056 176 ATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIA 211 (852)
Q Consensus 176 AAAl~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv 211 (852)
|+|+++....... ....++++-+|.| +-.+++
T Consensus 103 ~~a~ae~~~~~~~---~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 103 AAALAEYWFGAAK---DCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHHHHHHHHSTTT---TTSSEEEEEESSS-EEEEEE
T ss_pred cceeehhhcCccC---CcceEEEEEeecC-CCccee
Confidence 9999886654321 2467888899876 455554
No 221
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=33.64 E-value=6.4e+02 Score=30.98 Aligned_cols=119 Identities=13% Similarity=0.172 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHHhcCC-----CC
Q 003056 654 RELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAALSSD-----PK 728 (852)
Q Consensus 654 r~~i~~~l~e~~~WL~~dg~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~-----~~ 728 (852)
.+.....|++++.||.. |..+|..++.-+.-|+.+-+-.+---..-..|.+.|+.....+.-.+ -.
T Consensus 39 ld~a~~e~d~le~~l~~---------y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~i~~~~l~~L~ 109 (701)
T PF09763_consen 39 LDEALAECDELESWLSL---------YDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLSIPEEHLEALR 109 (701)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcCCCHHHHHHHh
Confidence 46667778888888853 44555555555555554443333333333333333333322220000 00
Q ss_pred CCCCCHHH-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcc-cHHHHHHHHHHHHHHh
Q 003056 729 FDHIDIAE-KQKVLNECADAEAWVREKKQQQDALPKYAAPVL-LLGDVRRKAEALDRFC 785 (852)
Q Consensus 729 ~~~~~~~e-~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~-~~~di~~k~~~l~~~~ 785 (852)
...++..+ +..+ .+.-.||...+..-.......+|-+ ....+..+.+.+++..
T Consensus 110 ~~~l~~~~~l~~~----e~a~~~L~~Al~~i~~~~~~~~~~~~~M~Av~er~~~~~~~~ 164 (701)
T PF09763_consen 110 NASLSSPDGLEKI----EEAAEALYKALKAIRPDLEKLDPGLGQMRAVKERREEYEKVS 164 (701)
T ss_pred cCCCCCcccHHHH----HHHHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 01232222 4444 3444667666665433333555555 6777777777766553
No 222
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=32.74 E-value=3e+02 Score=29.87 Aligned_cols=56 Identities=23% Similarity=0.207 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccc-----HHHHHHHHHHHHHHhhhhh
Q 003056 734 IAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLL-----LGDVRRKAEALDRFCRPIM 789 (852)
Q Consensus 734 ~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~-----~~di~~k~~~l~~~~~~l~ 789 (852)
+++-+.+..++.++...-...-+.+...=--..-++. ...++.|.++|.-+++.++
T Consensus 161 eeesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLL 221 (401)
T PF06785_consen 161 EEESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLL 221 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666655544433333221111111222 3467888888888888877
No 223
>PRK00292 glk glucokinase; Provisional
Probab=32.72 E-value=39 Score=36.92 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=17.3
Q ss_pred Ce-EEEEEcCccceEEEEEE
Q 003056 1 MS-VVGFDLGNESCIVAVAR 19 (852)
Q Consensus 1 m~-viGID~GTt~s~va~~~ 19 (852)
|. +||||+|.|++++++++
T Consensus 1 ~~~~lgiDIGgT~i~~~l~~ 20 (316)
T PRK00292 1 MKPALVGDIGGTNARFALCD 20 (316)
T ss_pred CceEEEEEcCccceEEEEEe
Confidence 54 89999999999999987
No 224
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=32.24 E-value=29 Score=32.55 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=15.0
Q ss_pred EEEEcCccceEEEEEEC
Q 003056 4 VGFDLGNESCIVAVARQ 20 (852)
Q Consensus 4 iGID~GTt~s~va~~~~ 20 (852)
+|||||+..+.+|+.+.
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 69999999999998754
No 225
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=32.23 E-value=3.1e+02 Score=33.36 Aligned_cols=68 Identities=12% Similarity=0.051 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhh
Q 003056 707 VIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCR 786 (852)
Q Consensus 707 a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~ 786 (852)
+...+...|..++..+... ..++.+++..+...+..++.||+. +. . ...+|+.+.++|+..+.
T Consensus 555 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~----~~-----~----~~~~~~~~~~~l~~~~~ 617 (657)
T PTZ00186 555 VRNNAETQLTTAERQLGEW----KYVSDAEKENVKTLVAELRKAMEN----PN-----V----AKDDLAAATDKLQKAVM 617 (657)
T ss_pred HHHHHHHHHHHHHHHhhhh----ccCCHHHHHHHHHHHHHHHHHHhc----CC-----c----CHHHHHHHHHHHHHHHH
Confidence 3344455555555555321 357899999999999999999952 11 1 23689999999999999
Q ss_pred hhhcC
Q 003056 787 PIMTK 791 (852)
Q Consensus 787 ~l~~k 791 (852)
.+..+
T Consensus 618 ~~~~~ 622 (657)
T PTZ00186 618 ECGRT 622 (657)
T ss_pred HHHHH
Confidence 98864
No 226
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=31.78 E-value=4.1e+02 Score=26.02 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhhhhh
Q 003056 747 AEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCRPIM 789 (852)
Q Consensus 747 ~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~ 789 (852)
...|+.+....-...+... ...++...+..++.+...+.
T Consensus 118 l~~wl~~~e~~l~~~~~~~----~~~~~~~~l~~~~~~~~~~~ 156 (213)
T cd00176 118 LEQWLEEKEAALASEDLGK----DLESVEELLKKHKELEEELE 156 (213)
T ss_pred HHHHHHHHHHHhcCcccCC----CHHHHHHHHHHHHHHHHHHH
Confidence 7899988777555433322 56677766666666655543
No 227
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=31.64 E-value=3.8e+02 Score=28.61 Aligned_cols=100 Identities=19% Similarity=0.223 Sum_probs=58.3
Q ss_pred CCCccHHHHHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 003056 672 GEDETKGVYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWV 751 (852)
Q Consensus 672 g~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl 751 (852)
.+|+....=...|=++.+.+.||..-.-+.-.|-.+++.|....+++-..+. |+. .....+.+.+..-..-|
T Consensus 270 ~~Da~~d~KV~elye~~qrw~pi~stLP~~V~rl~al~~LHeqa~~Fa~~lt-------hl~-t~q~~i~~sl~~n~ell 341 (371)
T KOG3958|consen 270 VEDADTDSKVHELYETIQRWSPIASTLPELVQRLVALKQLHEQAMQFAQLLT-------HLD-TTQQMIANSLKDNTELL 341 (371)
T ss_pred cccchhhhhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH-HHHHHHHHHHhcchHHH
Confidence 3566665545556666777889988888888888888888887777766552 221 22333333333333333
Q ss_pred HHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhhhh
Q 003056 752 REKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCRPI 788 (852)
Q Consensus 752 ~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l 788 (852)
.+....-.. ...-|..|+..++..+..|
T Consensus 342 ~~vqtt~~q---------nl~tV~~k~a~ie~rva~l 369 (371)
T KOG3958|consen 342 TQVQTTMRQ---------NLATVEGKFASIEERVAKL 369 (371)
T ss_pred HHHHHHHHH---------HHHHHHHHHHHHHHHHHHh
Confidence 222111110 1236777888887777655
No 228
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=31.33 E-value=3.8e+02 Score=32.64 Aligned_cols=66 Identities=6% Similarity=0.075 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHHHhHHHhhhhhhcCCCHHHHHHHHHHHHHHHH
Q 003056 597 GMLPVDVQKAVEKEFEMAL-QDRVMEETKDRKNAVEAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETED 666 (852)
Q Consensus 597 ~ls~~ei~~~~~~~~~~~~-~D~~~~~~~~akN~LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~ 666 (852)
.++..++............ .-....+..+....+|.-+-.+..+|. ..-.+++-+.+.+.+.+++.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~----~~~~~e~i~~l~e~l~~l~~ 435 (650)
T TIGR03185 369 RLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIS----TIPSEEQIAQLLEELGEAQN 435 (650)
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCChHHHHHHHHHHHHHHH
Confidence 4556665544333333221 112233334444555555555555553 22333444555555544443
No 229
>PLN02854 3-ketoacyl-CoA synthase
Probab=31.13 E-value=1.1e+02 Score=36.00 Aligned_cols=55 Identities=15% Similarity=0.258 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEE-eCCCCChHHHHHHHHhhcCCC
Q 003056 304 EQISAPILERVKRPLEKALAETGLSVEDVHMVEV-VGSSSRVPAIIKILTEFFGKE 358 (852)
Q Consensus 304 e~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViL-vGG~sriP~v~~~l~~~fg~~ 358 (852)
+...++.-.-+...++++|+++|+++++||.|++ +.+....|.+-.+|.+.+|.+
T Consensus 182 ~~~r~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LGlr 237 (521)
T PLN02854 182 EEARAEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYKLR 237 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCCC
Confidence 3333334444556778899999999999999987 344445899999999999843
No 230
>PRK04863 mukB cell division protein MukB; Provisional
Probab=31.10 E-value=1.5e+03 Score=30.66 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 003056 653 ERELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAALSSDPKFDHI 732 (852)
Q Consensus 653 er~~i~~~l~e~~~WL~~dg~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~ 732 (852)
..+.+...+.+..+.+.+- ....+...++++.|+.-.......+.+...+-.........+..++.++.. +.+
T Consensus 363 ~Lee~eeeLeeleeeleel--eeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~-----~~~ 435 (1486)
T PRK04863 363 RLEEQNEVVEEADEQQEEN--EARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGL-----PDL 435 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCC
Confidence 3344444444444444321 122333444444444444444444444444444444455555555555522 356
Q ss_pred CHHHHHHHHHH----HHHHHHHHHHHHH
Q 003056 733 DIAEKQKVLNE----CADAEAWVREKKQ 756 (852)
Q Consensus 733 ~~~e~~~v~~~----~~~~~~Wl~~~~~ 756 (852)
+.+++....+. +.+...++.+...
T Consensus 436 SdEeLe~~LenF~aklee~e~qL~elE~ 463 (1486)
T PRK04863 436 TADNAEDWLEEFQAKEQEATEELLSLEQ 463 (1486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666655444 4444555544443
No 231
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=31.10 E-value=3.9e+02 Score=29.41 Aligned_cols=19 Identities=16% Similarity=0.426 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 003056 653 ERELFTSKLQETEDWLYED 671 (852)
Q Consensus 653 er~~i~~~l~e~~~WL~~d 671 (852)
+..+|...-+++..|+..+
T Consensus 40 ~ikklq~~rdqiktw~s~~ 58 (548)
T COG5665 40 EIKKLQKHRDQIKTWLSKE 58 (548)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 4456667778889999764
No 232
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=31.01 E-value=79 Score=26.40 Aligned_cols=54 Identities=24% Similarity=0.430 Sum_probs=34.8
Q ss_pred HHHhhhcCCCccHHHHHHHHHH----HHhccchHHHHHH-hhhcchHHHHHHHHHHHHHHHHHh
Q 003056 665 EDWLYEDGEDETKGVYVAKLEE----LKKQGDPIEERYK-EFTDRSSVIDQLAYCINSYREAAL 723 (852)
Q Consensus 665 ~~WL~~dg~~a~~~~~~~kl~~----L~~~~~pi~~R~~-e~~~rp~a~~~l~~~l~~~~~~~~ 723 (852)
+.||.++ ..+..+|.+. |+.-++.+..|+. -+..||+.|.-+...-+.++.+++
T Consensus 13 skWL~~~-----l~dmd~kvk~mlklieedgdSfakrAEmyy~kRp~Li~~vee~yr~YrsLAe 71 (74)
T PF07765_consen 13 SKWLQEN-----LSDMDEKVKAMLKLIEEDGDSFAKRAEMYYKKRPELISLVEEFYRSYRSLAE 71 (74)
T ss_pred CHHHHHH-----HHHHHHHHHHHHHHhccCcchHHHhhHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 4566553 3444444443 3334455666654 477999999999998888888774
No 233
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.99 E-value=7.6e+02 Score=31.77 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=19.8
Q ss_pred cHHHHHHHHHHHHhccchHHHHHHhhhcchH
Q 003056 676 TKGVYVAKLEELKKQGDPIEERYKEFTDRSS 706 (852)
Q Consensus 676 ~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~ 706 (852)
..+-+.+++..+++-+.|...+..++..+-+
T Consensus 473 ~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~ 503 (1293)
T KOG0996|consen 473 ETEGIREEIEKLEKELMPLLKQVNEARSELD 503 (1293)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666677777777777766665544
No 234
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=30.70 E-value=45 Score=34.04 Aligned_cols=34 Identities=24% Similarity=0.168 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHcCCc---ceeeechhHHHHHHhh
Q 003056 149 TDLQRRAVIDAATIAGLH---PLRLFHETTATALAYG 182 (852)
Q Consensus 149 ~~~qR~al~~Aa~~AGl~---~~~li~Ep~AAAl~y~ 182 (852)
...-.+.+.+|....|++ ++.++|+.+|..++.+
T Consensus 167 G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~ 203 (206)
T PF00349_consen 167 GKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGA 203 (206)
T ss_dssp TSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHH
T ss_pred CCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhh
Confidence 333446667777777765 7789999999887654
No 235
>PRK13324 pantothenate kinase; Reviewed
Probab=30.51 E-value=49 Score=35.06 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=17.5
Q ss_pred EEEEEcCccceEEEEEECCc
Q 003056 3 VVGFDLGNESCIVAVARQRG 22 (852)
Q Consensus 3 viGID~GTt~s~va~~~~~~ 22 (852)
++.||+|+|+++.+++.++.
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 78999999999999998543
No 236
>PLN03173 chalcone synthase; Provisional
Probab=30.40 E-value=1.3e+02 Score=34.03 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCC-ChHHHHHHHHhhcCCC
Q 003056 308 APILERVKRPLEKALAETGLSVEDVHMVEVVGSSS-RVPAIIKILTEFFGKE 358 (852)
Q Consensus 308 ~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~s-riP~v~~~l~~~fg~~ 358 (852)
+.-.+-..+.++++|+++|++.++|+.|+++..+. ..|.+--.|.+.+|..
T Consensus 100 ~~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~ 151 (391)
T PLN03173 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLR 151 (391)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCC
Confidence 34445556678899999999999999998876554 5899999999999853
No 237
>PRK13326 pantothenate kinase; Reviewed
Probab=30.15 E-value=50 Score=35.10 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=18.3
Q ss_pred eEEEEEcCccceEEEEEECCc
Q 003056 2 SVVGFDLGNESCIVAVARQRG 22 (852)
Q Consensus 2 ~viGID~GTt~s~va~~~~~~ 22 (852)
.++.||+|+|+++++++++++
T Consensus 7 ~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred EEEEEEeCCCeEEEEEEECCE
Confidence 468999999999999998654
No 238
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=29.25 E-value=1.1e+02 Score=32.20 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=32.6
Q ss_pred CccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHH
Q 003056 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCA 374 (852)
Q Consensus 331 ~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa 374 (852)
.++.|+| |||..|++.+.+++.||..+ .-+||.+++|+=+.
T Consensus 172 ~~d~lIL--GCTh~P~l~~~i~~~~~~~v-~~IDp~~~la~~~~ 212 (251)
T TIGR00067 172 LPDTVVL--GCTHFPLLKEEIEQYLPEHV-RLVDSGVHTARRTA 212 (251)
T ss_pred CCCEEEE--CcCChHHHHHHHHHHcCCCc-EEECCHHHHHHHHH
Confidence 4676655 99999999999999998654 56899888877554
No 239
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=28.62 E-value=1.8e+02 Score=34.86 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhcCC-------Cc---cHHHHHHHHHHHHhccch
Q 003056 624 KDRKNAVEAYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGE-------DE---TKGVYVAKLEELKKQGDP 693 (852)
Q Consensus 624 ~~akN~LEs~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~dg~-------~a---~~~~~~~kl~~L~~~~~p 693 (852)
-.+...|+..|-.+|..+. ++.++....+.+.+.||...-. .+ ..++...+-++|.+.+.|
T Consensus 651 ~k~~d~~~~~i~~~r~~~~---------~~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~~~ 721 (727)
T KOG0103|consen 651 PKAFDELGKKIQEIRKAIE---------SEMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTCSD 721 (727)
T ss_pred hHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhcccccc
Confidence 4455666666666665553 2788899999999999976411 22 237888999999999999
Q ss_pred HHHH
Q 003056 694 IEER 697 (852)
Q Consensus 694 i~~R 697 (852)
|..+
T Consensus 722 i~~~ 725 (727)
T KOG0103|consen 722 IISK 725 (727)
T ss_pred cccc
Confidence 8764
No 240
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=28.54 E-value=62 Score=36.45 Aligned_cols=32 Identities=25% Similarity=0.491 Sum_probs=25.7
Q ss_pred CCceEEEEEeCCceeEEEEEEee-CCeEEEEEE
Q 003056 192 DQLNVAFVDIGHASLQVCIAGFK-KGQLKILGH 223 (852)
Q Consensus 192 ~~~~vlv~D~GggT~dvsiv~~~-~~~~~vl~~ 223 (852)
+.+.+|++|+||..+-+++|++. .|.+.+...
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~~s 105 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDIEQS 105 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCcccccC
Confidence 46789999999999999999998 455554433
No 241
>PRK03918 chromosome segregation protein; Provisional
Probab=28.42 E-value=1.3e+03 Score=29.08 Aligned_cols=12 Identities=17% Similarity=0.476 Sum_probs=5.4
Q ss_pred EEeC--CCCChHHH
Q 003056 336 EVVG--SSSRVPAI 347 (852)
Q Consensus 336 iLvG--G~sriP~v 347 (852)
+++| |++..-.+
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 3555 44444444
No 242
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=27.83 E-value=1.5e+03 Score=31.09 Aligned_cols=52 Identities=15% Similarity=0.351 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhh
Q 003056 735 AEKQKVLNECADAEAWVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCR 786 (852)
Q Consensus 735 ~e~~~v~~~~~~~~~Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~ 786 (852)
..+..+.-.|.++..|+.++...+..++.-..-.-.+-++..++..+++-+.
T Consensus 950 ~~V~~f~~eC~et~~wi~dK~~~~e~t~~~~~Dl~gv~alqrrL~~lErdl~ 1001 (2473)
T KOG0517|consen 950 LRVETFHLECEETRVWIRDKTRVLESTDRLGNDLAGVMALQRRLQGLERDLA 1001 (2473)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCcchHHHHHHHHHHhhhhhHHH
Confidence 4667777889999999999976666555444433334444444444444333
No 243
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=27.51 E-value=76 Score=35.32 Aligned_cols=44 Identities=11% Similarity=0.124 Sum_probs=33.7
Q ss_pred CccEEEEeCCCCChHHHHHHHHhhcC--CCC--cccCCchhHHHhhHH
Q 003056 331 DVHMVEVVGSSSRVPAIIKILTEFFG--KEP--RRTMNASECVARGCA 374 (852)
Q Consensus 331 ~I~~ViLvGG~sriP~v~~~l~~~fg--~~v--~~~~n~deava~GAa 374 (852)
+++.|++.||.+..+.+.+.|.+.+. .++ ...-+-.++.|.||.
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~ 340 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGAL 340 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHH
Confidence 57999999999999988999988885 333 333455678888885
No 244
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=27.49 E-value=1.1e+03 Score=28.23 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 003056 716 NSYREAALSSDPKFDHIDIAEKQKVLNECADAEAWVREKKQQQDA 760 (852)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~e~~~v~~~~~~~~~Wl~~~~~~q~~ 760 (852)
......+......|+.+ .+.+..+...+.++..+..+....-..
T Consensus 361 ~~~~~~i~~~~~~yS~i-~~~l~~~~~~l~~ie~~q~~~~~~l~~ 404 (560)
T PF06160_consen 361 EDLEERIEEQQVPYSEI-QEELEEIEEQLEEIEEEQEEINESLQS 404 (560)
T ss_pred HHHHHHHHcCCcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455566555 355666666666666665554444433
No 245
>PLN03170 chalcone synthase; Provisional
Probab=27.48 E-value=2.8e+02 Score=31.45 Aligned_cols=52 Identities=19% Similarity=0.210 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCC-ChHHHHHHHHhhcCCC
Q 003056 307 SAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSS-RVPAIIKILTEFFGKE 358 (852)
Q Consensus 307 ~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~s-riP~v~~~l~~~fg~~ 358 (852)
.+...+=.....+++|+++|++.++|+.|+++-.+. .+|.+--.|.+.+|..
T Consensus 103 ~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~ 155 (401)
T PLN03170 103 VVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLR 155 (401)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCcC
Confidence 334445556678899999999999999988776544 6999999999999853
No 246
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=27.29 E-value=6.9e+02 Score=32.51 Aligned_cols=45 Identities=22% Similarity=0.264 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhHHHh
Q 003056 597 GMLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYDMRNKL 641 (852)
Q Consensus 597 ~ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~L 641 (852)
.+++.+...+.+.+......+....+..+....++.-+..+++.+
T Consensus 149 ~~~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~ 193 (1164)
T TIGR02169 149 SMSPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLII 193 (1164)
T ss_pred CCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777666666655544444444444444444444444554444
No 247
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=26.79 E-value=32 Score=33.16 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=14.1
Q ss_pred EEEEEcCccceEEEEEEC
Q 003056 3 VVGFDLGNESCIVAVARQ 20 (852)
Q Consensus 3 viGID~GTt~s~va~~~~ 20 (852)
|+|||-|++++..|++..
T Consensus 1 ILGIDPgl~~tG~avi~~ 18 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEE 18 (149)
T ss_dssp EEEEE--SSEEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEEe
Confidence 799999999999998753
No 248
>PLN03172 chalcone synthase family protein; Provisional
Probab=26.50 E-value=1.5e+02 Score=33.65 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCC-ChHHHHHHHHhhcCCC
Q 003056 304 EQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSS-RVPAIIKILTEFFGKE 358 (852)
Q Consensus 304 e~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~s-riP~v~~~l~~~fg~~ 358 (852)
+...+.-.+-..+.++++|+++|+..++|+.|+++..+. .+|.+--.|.+.+|..
T Consensus 96 ~~~~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~ 151 (393)
T PLN03172 96 DMVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLK 151 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCC
Confidence 333344455556678899999999999999998776554 6999999999999843
No 249
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.42 E-value=1.7e+02 Score=30.75 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=43.7
Q ss_pred eEEEEEeCCceeEEEEEEeeCC-eEE----------------------EEEEeCCCCcccHHHHHHHHHHHHHHHHhhhc
Q 003056 195 NVAFVDIGHASLQVCIAGFKKG-QLK----------------------ILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYK 251 (852)
Q Consensus 195 ~vlv~D~GggT~dvsiv~~~~~-~~~----------------------vl~~~~d~~lGG~~~D~~l~~~l~~~~~~k~~ 251 (852)
++|++|+|.||.|+-.+.-... .+. -+... +...||--.+.++.+||.. +
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~-G~~MGGGp~travrrhlk~------G 74 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALI-GVPMGGGPTTRAVRRHLKK------G 74 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEE-eeecCCChhhHHHHHHHhc------C
Confidence 5899999999999987654310 000 11111 3568899999999988764 2
Q ss_pred ccccCCHHHHHHHHHHHHHhhh
Q 003056 252 IDVSQNARASLRLRVACEKLKK 273 (852)
Q Consensus 252 ~~~~~~~~~~~rL~~~aek~K~ 273 (852)
..+...+++-.-|..-.|+++.
T Consensus 75 ~rVyatedAAlT~hddleRv~e 96 (342)
T COG4012 75 TRVYATEDAALTLHDDLERVEE 96 (342)
T ss_pred CeeEechhhhhhhhcCHHHHHh
Confidence 2333344444445555555553
No 250
>PRK12440 acetate kinase; Reviewed
Probab=26.37 E-value=3.9e+02 Score=30.22 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHH-HHHHHHhhcC
Q 003056 307 SAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPA-IIKILTEFFG 356 (852)
Q Consensus 307 ~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~-v~~~l~~~fg 356 (852)
++-++.|+.+.|-......+ .+|.|+++||-+.... |++.|.+.++
T Consensus 300 ~d~f~yri~k~Ig~~~a~l~----gvDaiVFTgGIGen~~~vr~~i~~~l~ 346 (397)
T PRK12440 300 FEVFTYRVAKYIASYLAALD----SLDGIIFTGGIGENSLPIRREILKNLK 346 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhC----CCCEEEECCccccCcHHHHHHHHhhhh
Confidence 34455566555555444432 5999999999988766 9999988764
No 251
>COG4755 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.35 E-value=5.3e+02 Score=23.96 Aligned_cols=83 Identities=17% Similarity=0.171 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHH---hcC---CCC
Q 003056 655 ELFTSKLQETEDWLYEDGEDETKGVYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAA---LSS---DPK 728 (852)
Q Consensus 655 ~~i~~~l~e~~~WL~~dg~~a~~~~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~---~~~---~~~ 728 (852)
+-+......++.|.... +..|.+|++++.....- .|-..|-..+.++++....+ ++| +-.
T Consensus 11 ~~~~sf~~~Le~WvklQ---------k~~l~~lk~~~~~~k~~-----DRLdLi~~~r~af~hm~rtLKaFd~WLqdP~v 76 (151)
T COG4755 11 EYLESFMERLEQWVKLQ---------KRQLKELKSHGEHMKVA-----DRLDLIYSARAAFGHMARTLKAFDSWLQDPVV 76 (151)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHhHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH
Confidence 44455566778888653 45777888877665432 55555555566665543322 222 222
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Q 003056 729 FDHIDIAEKQKVLNECADAEAWV 751 (852)
Q Consensus 729 ~~~~~~~e~~~v~~~~~~~~~Wl 751 (852)
-.|++.+=+..|.+..-++..-|
T Consensus 77 ~s~mPremL~dv~~t~~e~~~~l 99 (151)
T COG4755 77 TSVMPREMLRDVESTLREVAIKL 99 (151)
T ss_pred hhhCcHHHHHHHHHHHHHHHHHH
Confidence 35677777777777764444333
No 252
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=26.18 E-value=1.9e+02 Score=33.31 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=34.2
Q ss_pred CceEEEEEeCCceeEEEEEEeeCCeEEEEEEe-CCCCcccHHHHHHHH
Q 003056 193 QLNVAFVDIGHASLQVCIAGFKKGQLKILGHS-FDRSVGGRDFDEVLF 239 (852)
Q Consensus 193 ~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~-~d~~lGG~~~D~~l~ 239 (852)
..+-+-+|+|.+++-+-++.+..+.+.-.+.. ...--||+++|.+..
T Consensus 163 ~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~ 210 (614)
T COG3894 163 EAYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDF 210 (614)
T ss_pred eeeeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHH
Confidence 34567899999999999999998754333333 233469999987764
No 253
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=26.17 E-value=8.6e+02 Score=26.56 Aligned_cols=202 Identities=12% Similarity=0.089 Sum_probs=0.0
Q ss_pred CCcceeeechhHHHHHHhhhhcCCCCCC-------CCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCccc-HHHH
Q 003056 164 GLHPLRLFHETTATALAYGIYKTDLPEN-------DQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGG-RDFD 235 (852)
Q Consensus 164 Gl~~~~li~Ep~AAAl~y~~~~~~~~~~-------~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG-~~~D 235 (852)
|++.+.|||+-+|.|++-..-...-... .....+|+=.|.|==-..++...++..-+-+-+|...+.- .+.+
T Consensus 91 g~~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTGLG~a~l~~~~~~~~v~~sEgGH~~fap~~~~e 170 (316)
T PF02685_consen 91 GIPRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTGLGVALLVPDGDGYYVLPSEGGHVDFAPRTDEE 170 (316)
T ss_dssp T-TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSSEEEEEEEEETTEEEEEEE-GGGSB---SSHHH
T ss_pred CCceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCCcEEEEEEecCCceEeCCCccccccCCCCCHHH
Q ss_pred HHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCCcceEEEecHHHH---HHHHHHHHH
Q 003056 236 EVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEF---EQISAPILE 312 (852)
Q Consensus 236 ~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~itr~ef---e~l~~~~~~ 312 (852)
..|.++|.+++ ..-...---+-+-+.+|.+........-....... .|++.-+ ..+|...++
T Consensus 171 ~~l~~~l~~~~-~~vs~E~vlSG~GL~~ly~~l~~~~~~~~~~~~~~--------------~I~~~A~~~~d~~a~~al~ 235 (316)
T PF02685_consen 171 AELLRFLRRRY-GRVSVERVLSGRGLENLYRFLAGERGAEPPLLSAA--------------EISAAALEGGDPLAREALD 235 (316)
T ss_dssp HHHHHHHHHHC-TS-BHHHCSSHHHHHHHHHHHHCCTT--S----HH--------------HHHHHHHCT--HHHHHHHH
T ss_pred HHHHHHHHHhc-CCceeEeecchhhHHHHHHHHHhccCCCCCCCCHH--------------HHHHHHHcCCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEeCCCC-ChHHH------------HHHHHhhcCCCCcccCCchhHHHhhHHHhhhh
Q 003056 313 RVKRPLEKALAETGLSVEDVHMVEVVGSSS-RVPAI------------IKILTEFFGKEPRRTMNASECVARGCALQCAI 379 (852)
Q Consensus 313 ~i~~~i~~~l~~a~~~~~~I~~ViLvGG~s-riP~v------------~~~l~~~fg~~v~~~~n~deava~GAa~~aa~ 379 (852)
.+...+-+++...-+...--..|+|.||-+ ++..+ +-.++.++..-+..-+.-+.+.-+||+.++..
T Consensus 236 ~f~~~lg~~agdlaL~~~a~gGvyiaGGI~~~~~~~l~~~~F~~~F~~kg~~~~~l~~iPv~li~~~~~gL~Gaa~~a~~ 315 (316)
T PF02685_consen 236 LFARILGRVAGDLALTFLARGGVYIAGGIAPRLLPLLDESAFREAFEDKGRMSDLLEDIPVYLITDPDAGLLGAAAYARQ 315 (316)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCEEEEE-TTGGGGHHHHHCSSHHHHHH--GGGHHHHTT--EEEE--S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCeeEEEecchhhHHHHHcChhHHHHHHhccCCcHHHHhcCcEEEEeCCCHHHHHHHHHHhc
Q ss_pred h
Q 003056 380 L 380 (852)
Q Consensus 380 l 380 (852)
.
T Consensus 316 ~ 316 (316)
T PF02685_consen 316 H 316 (316)
T ss_dssp -
T ss_pred C
No 254
>PRK04863 mukB cell division protein MukB; Provisional
Probab=25.62 E-value=1.8e+03 Score=29.88 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH---HHHHhHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHhhh
Q 003056 598 MLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEA---YVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYE 670 (852)
Q Consensus 598 ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs---~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~ 670 (852)
-..+++..+.+....+. .++.+++..|+. -+-.+++.|.+ -......|...+..++.|+..
T Consensus 276 r~~eERR~liEEAag~r------~rk~eA~kkLe~tE~nL~rI~diL~E------Le~rL~kLEkQaEkA~kyleL 339 (1486)
T PRK04863 276 RHANERRVHLEEALELR------RELYTSRRQLAAEQYRLVEMARELAE------LNEAESDLEQDYQAASDHLNL 339 (1486)
T ss_pred hCHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777775554 333334333332 22233333321 123445555555566666543
No 255
>PRK12704 phosphodiesterase; Provisional
Probab=25.43 E-value=1e+03 Score=28.15 Aligned_cols=60 Identities=18% Similarity=0.273 Sum_probs=29.3
Q ss_pred HHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Q 003056 680 YVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAALSSDPKFDHIDIAEKQK 739 (852)
Q Consensus 680 ~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~ 739 (852)
+.++.+.|.+.-.-+..|..+...+-+.++.....+..........-+..+.+|.++-+.
T Consensus 98 Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt~~ea~~ 157 (520)
T PRK12704 98 LDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKE 157 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 444555555555555555555555555555554444443332222234455566666544
No 256
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=25.42 E-value=1.2e+03 Score=27.73 Aligned_cols=23 Identities=4% Similarity=0.109 Sum_probs=14.6
Q ss_pred hhhcchHHHHHHHHHHHHHHHHH
Q 003056 700 EFTDRSSVIDQLAYCINSYREAA 722 (852)
Q Consensus 700 e~~~rp~a~~~l~~~l~~~~~~~ 722 (852)
....=|..++.++..|.......
T Consensus 295 ~l~~dp~~L~ele~RL~~l~~Lk 317 (563)
T TIGR00634 295 ELEFDPERLNEIEERLAQIKRLK 317 (563)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHH
Confidence 33444777777777777665544
No 257
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=24.99 E-value=1.2e+03 Score=27.71 Aligned_cols=167 Identities=16% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhHHHhhh---hhhcCCC--HHHHHHHHHHHHHHHHHhhhcCCC
Q 003056 600 PVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYDMRNKLCD---KYQDFVT--DSERELFTSKLQETEDWLYEDGED 674 (852)
Q Consensus 600 ~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~L~~---~~~~~~~--~~er~~i~~~l~e~~~WL~~dg~~ 674 (852)
.+++..+...+..+...+..-| .+...|...--.+|..|-. .|...+. +...+.|....+...+|...-...
T Consensus 118 e~~~~~i~~~l~~l~~~e~~nr---~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~ 194 (569)
T PRK04778 118 EEDIEQILEELQELLESEEKNR---EEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGDYV 194 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Q ss_pred ccHH---HHHHHHHHHHhccchHHHHHHhhhc-chHHHHHHHHHHHHHHHHHhcCCCCCCCCC-HHHHHHHHHHHHHHHH
Q 003056 675 ETKG---VYVAKLEELKKQGDPIEERYKEFTD-RSSVIDQLAYCINSYREAALSSDPKFDHID-IAEKQKVLNECADAEA 749 (852)
Q Consensus 675 a~~~---~~~~kl~~L~~~~~pi~~R~~e~~~-rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~-~~e~~~v~~~~~~~~~ 749 (852)
.-.+ .+...+..|...+.-|=.-+.+... .|..++.|+.-.......- =.++|+. +.+++.+.+.+.+...
T Consensus 195 ~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~g----y~~~~~~i~~~i~~l~~~i~~~~~ 270 (569)
T PRK04778 195 EAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEG----YHLDHLDIEKEIQDLKEQIDENLA 270 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC----CCCCCCChHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhcCCCCCCCcccHHHHHHHHHHHHHHhhhh
Q 003056 750 WVREKKQQQDALPKYAAPVLLLGDVRRKAEALDRFCRPI 788 (852)
Q Consensus 750 Wl~~~~~~q~~~~~~~dP~~~~~di~~k~~~l~~~~~~l 788 (852)
-+.. +.+.++..+.+.+...++.+
T Consensus 271 ~l~~---------------l~l~~~~~~~~~i~~~Id~L 294 (569)
T PRK04778 271 LLEE---------------LDLDEAEEKNEEIQERIDQL 294 (569)
T ss_pred HHHh---------------cChHHHHHHHHHHHHHHHHH
No 258
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=24.03 E-value=1.3e+02 Score=29.82 Aligned_cols=56 Identities=21% Similarity=0.362 Sum_probs=31.4
Q ss_pred HHHHHhHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHhhhcCCC-ccHHHHHHHHHHHHhccchHH
Q 003056 632 AYVYDMRNKLCDKYQDFVTDSERELFTSKLQETEDWLYEDGED-ETKGVYVAKLEELKKQGDPIE 695 (852)
Q Consensus 632 s~iy~~r~~L~~~~~~~~~~~er~~i~~~l~e~~~WL~~dg~~-a~~~~~~~kl~~L~~~~~pi~ 695 (852)
.|+-++|..|. .++++||+++ ++.+++++++.+++ .+-++..+.|..-+.+.+.+.
T Consensus 5 efL~~L~~~L~-----~lp~~e~~e~---l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~ 61 (181)
T PF08006_consen 5 EFLNELEKYLK-----KLPEEEREEI---LEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREIL 61 (181)
T ss_pred HHHHHHHHHHH-----cCCHHHHHHH---HHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHH
Confidence 45555555553 3677766655 66777777764433 344555555555455444444
No 259
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=23.81 E-value=3e+02 Score=29.80 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=36.0
Q ss_pred CCceEEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccHHHHHHHHHHHHHH
Q 003056 192 DQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAK 245 (852)
Q Consensus 192 ~~~~vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~~~D~~l~~~l~~~ 245 (852)
...+++-+|+|+.++.++++......+..........-....+-..|.+.+.+.
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~~ 57 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAEL 57 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHHHH
Confidence 357899999999999999998887655444444333333345556666555443
No 260
>PTZ00107 hexokinase; Provisional
Probab=23.49 E-value=2.7e+02 Score=32.34 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=21.7
Q ss_pred CceEEEEEeCCceeEEEEEEeeCC
Q 003056 193 QLNVAFVDIGHASLQVCIAGFKKG 216 (852)
Q Consensus 193 ~~~vlv~D~GggT~dvsiv~~~~~ 216 (852)
...+|.+|+||.++-|++|++.++
T Consensus 73 ~G~fLAlDlGGTN~RV~~V~L~g~ 96 (464)
T PTZ00107 73 KGVYYAIDFGGTNFRAVRVSLRGG 96 (464)
T ss_pred cceEEEEecCCceEEEEEEEeCCC
Confidence 566999999999999999999864
No 261
>PLN03168 chalcone synthase; Provisional
Probab=23.41 E-value=1.7e+02 Score=33.06 Aligned_cols=56 Identities=16% Similarity=0.251 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCC-CChHHHHHHHHhhcCCC
Q 003056 303 FEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSS-SRVPAIIKILTEFFGKE 358 (852)
Q Consensus 303 fe~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~-sriP~v~~~l~~~fg~~ 358 (852)
.+...+...+=..+..+++|+++|+++++|+.|+++-.+ -.+|.+--.|.+.+|..
T Consensus 94 ~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~ 150 (389)
T PLN03168 94 HDIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGLK 150 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCcC
Confidence 333444555555777899999999999999999876433 35899999999999853
No 262
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=23.41 E-value=1e+02 Score=35.89 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=16.1
Q ss_pred EEEEEcCccceEEEEEE
Q 003056 3 VVGFDLGNESCIVAVAR 19 (852)
Q Consensus 3 viGID~GTt~s~va~~~ 19 (852)
++|||.|||.+++++++
T Consensus 8 ~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 8 VLGIDVGTTSARALVFN 24 (516)
T ss_pred EEEEEcCCCceEEEEEe
Confidence 79999999999999987
No 263
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=23.33 E-value=78 Score=35.45 Aligned_cols=48 Identities=21% Similarity=0.212 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHHHhhcC
Q 003056 307 SAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKILTEFFG 356 (852)
Q Consensus 307 ~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l~~~fg 356 (852)
++..+..+...|+++|+++|++..||+.+++.+++.++-- ..+++.||
T Consensus 266 ~~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~~d--~~~~~llg 313 (372)
T PRK07515 266 FKEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINMNQ--LIGKKVLG 313 (372)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHHH--HHHHHhcc
Confidence 3455667778999999999999999999999999987542 23444465
No 264
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.91 E-value=1.1e+03 Score=28.91 Aligned_cols=10 Identities=10% Similarity=0.292 Sum_probs=5.4
Q ss_pred HHHHHHHHHH
Q 003056 623 TKDRKNAVEA 632 (852)
Q Consensus 623 ~~~akN~LEs 632 (852)
++.||..||.
T Consensus 398 rEaar~ElEk 407 (1118)
T KOG1029|consen 398 REAAREELEK 407 (1118)
T ss_pred HHHHHHHHHH
Confidence 3445566665
No 265
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=22.82 E-value=73 Score=33.41 Aligned_cols=45 Identities=11% Similarity=0.105 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCCh
Q 003056 300 RDEFEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRV 344 (852)
Q Consensus 300 r~efe~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sri 344 (852)
++.-+.+-..++......|+..+++..-....--.|+++||.++.
T Consensus 175 ~~T~~ai~sG~~~g~~~~i~~~i~~~~~~~~~~~~vi~TGG~a~~ 219 (243)
T TIGR00671 175 KSTREAVQSGAVYGVLGLIQGLLKDWKKYFKRKFAVVITGGDGKY 219 (243)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCchHh
Confidence 445555666666666666666665431111111259999999887
No 266
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=22.78 E-value=1.3e+02 Score=28.44 Aligned_cols=47 Identities=19% Similarity=0.417 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhHHHhhhhhhcCCCHHHHHHH----HHHHHHHHHHhhhcCC
Q 003056 627 KNAVEAYVYDMRNKLCDKYQDFVTDSERELF----TSKLQETEDWLYEDGE 673 (852)
Q Consensus 627 kN~LEs~iy~~r~~L~~~~~~~~~~~er~~i----~~~l~e~~~WL~~dg~ 673 (852)
.+.||.+++++-+=-...|..+++.+|-.++ .+.++.+..||...|-
T Consensus 26 ~~~L~~~l~~vsdP~s~~Ygk~Lt~~e~~~~~~p~~~~v~~V~~wL~~~G~ 76 (143)
T PF09286_consen 26 LDALEQYLAEVSDPGSPNYGKYLTPEEFAALFAPSPEDVAAVKSWLKSHGL 76 (143)
T ss_dssp HHHHHHHHHHHHTTTSTTTT----HHHHHHHHS--HHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHhCcCCCCcccccCCCHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 4678899998877665678899999887775 3568999999998764
No 267
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=22.45 E-value=4.7e+02 Score=23.97 Aligned_cols=86 Identities=15% Similarity=0.212 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHHhhhhcCCCCcccEEEecccCCcceEEEecHHHHHHHHH---HHHH
Q 003056 236 EVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECLMEEKDVRGFIKRDEFEQISA---PILE 312 (852)
Q Consensus 236 ~~l~~~l~~~~~~k~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~i~ie~l~~~~d~~~~itr~efe~l~~---~~~~ 312 (852)
..|-+++..-|.+.++-.+ .......+|.++++.-...++..... ++ ..|.+.++..+|+.+.. .+..
T Consensus 6 ~~lE~~v~g~Far~F~~~v-qPvEIa~~L~remd~~a~~~~~~r~~---aP-----N~y~V~Ls~~D~~~l~~~~~~l~~ 76 (116)
T PF12401_consen 6 RRLERAVEGAFARVFRSEV-QPVEIAKALRREMDDQARVVSRGRTL---AP-----NVYTVELSPEDYERLSPWGDRLAR 76 (116)
T ss_dssp ---SS--STHHHHHHTTSS--THHHHHHHHHHHHHT-B---TT--B-----------EEEEEEEHHHHHHH-S-SHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHhCCeecCCCCEE---cC-----eeEEEEECHHHHHHHhhhHHHHHH
Confidence 3344444444444444332 22344556777777776666554422 22 24788999999999987 6888
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 003056 313 RVKRPLEKALAETGLSVE 330 (852)
Q Consensus 313 ~i~~~i~~~l~~a~~~~~ 330 (852)
.+...+.+.....|+...
T Consensus 77 el~~~l~~~a~~qgy~~~ 94 (116)
T PF12401_consen 77 ELADYLAEHAREQGYTFV 94 (116)
T ss_dssp HHHHHHHHHHHHHT-B-S
T ss_pred HHHHHHHHHHHHCCCeec
Confidence 888888888888776543
No 268
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=22.43 E-value=28 Score=39.67 Aligned_cols=50 Identities=22% Similarity=0.338 Sum_probs=38.8
Q ss_pred ccEEEEeCCCCChHHHHHHHHhhcC------CC---------CcccCCchhHHHhhHHHhhhhhc
Q 003056 332 VHMVEVVGSSSRVPAIIKILTEFFG------KE---------PRRTMNASECVARGCALQCAILS 381 (852)
Q Consensus 332 I~~ViLvGG~sriP~v~~~l~~~fg------~~---------v~~~~n~deava~GAa~~aa~ls 381 (852)
.+.|.+|||+...|++...|++..- .. ..+..||...+=.|||+++..-.
T Consensus 527 ~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 527 FSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 5789999999999999999988762 11 12446888888889999886543
No 269
>PRK13320 pantothenate kinase; Reviewed
Probab=22.40 E-value=88 Score=32.86 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=17.7
Q ss_pred EEEEEcCccceEEEEEECCc
Q 003056 3 VVGFDLGNESCIVAVARQRG 22 (852)
Q Consensus 3 viGID~GTt~s~va~~~~~~ 22 (852)
++.||+|+|+++.+++.++.
T Consensus 4 ~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred EEEEEeCCCcEEEEEEECCE
Confidence 78999999999999998653
No 270
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=22.39 E-value=43 Score=38.68 Aligned_cols=19 Identities=11% Similarity=0.050 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhHHHhh
Q 003056 624 KDRKNAVEAYVYDMRNKLC 642 (852)
Q Consensus 624 ~~akN~LEs~iy~~r~~L~ 642 (852)
+-.|--+|+..|.+|.-++
T Consensus 360 ~l~RAv~Egva~~~r~~~e 378 (454)
T TIGR02627 360 ELARCIFDSLALLYRQVLL 378 (454)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4577889999999998885
No 271
>PF13941 MutL: MutL protein
Probab=22.31 E-value=1.9e+02 Score=33.33 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=33.3
Q ss_pred EEEEEeCCceeEEEEEEeeCCeEEEEEEeCCCCcccH-HHHHHHHHH
Q 003056 196 VAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGR-DFDEVLFQH 241 (852)
Q Consensus 196 vlv~D~GggT~dvsiv~~~~~~~~vl~~~~d~~lGG~-~~D~~l~~~ 241 (852)
+|++|||+.+|-++++....+..++++.+....--.. |+..-+.+-
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A 48 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNA 48 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHH
Confidence 7999999999999999877778888887644432233 555555443
No 272
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=22.01 E-value=2.3e+02 Score=30.98 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHH------HHHHhhcCCCCcccCCchhHHHh
Q 003056 308 APILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAII------KILTEFFGKEPRRTMNASECVAR 371 (852)
Q Consensus 308 ~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~------~~l~~~fg~~v~~~~n~deava~ 371 (852)
..-.+.+...|+++|++++++..+||.|.+..|-...++++ +.|...++.++ ..++-.+|=+.
T Consensus 43 ~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg~~~~l~vg~~~ak~la~~~~~p~-~~v~h~~aHa~ 111 (322)
T TIGR03722 43 EHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLGPCLRVGATAARALALKLNKPL-VGVNHCVAHIE 111 (322)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCchHHhHHHHHHHHHHHHHHhCCCe-echhhHHHHHH
Confidence 34556677889999999999999999999998877777665 33444455543 44455554443
No 273
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=21.90 E-value=50 Score=38.40 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=15.4
Q ss_pred EEEEcCccceEEEEEEC
Q 003056 4 VGFDLGNESCIVAVARQ 20 (852)
Q Consensus 4 iGID~GTt~s~va~~~~ 20 (852)
||||+||+++++++++.
T Consensus 1 lgIDiGtt~ik~~l~d~ 17 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDE 17 (481)
T ss_pred CceeecCcceEEEEECC
Confidence 69999999999999864
No 274
>PRK00865 glutamate racemase; Provisional
Probab=21.85 E-value=2.2e+02 Score=30.18 Aligned_cols=42 Identities=14% Similarity=0.319 Sum_probs=32.5
Q ss_pred CccEEEEeCCCCChHHHHHHHHhhcCCCCcccCCchhHHHhhHHH
Q 003056 331 DVHMVEVVGSSSRVPAIIKILTEFFGKEPRRTMNASECVARGCAL 375 (852)
Q Consensus 331 ~I~~ViLvGG~sriP~v~~~l~~~fg~~v~~~~n~deava~GAa~ 375 (852)
.++.|+| |||-+|++.+.+++.++..+ .-+||.++++.-+.-
T Consensus 177 g~d~iIL--GCTh~p~l~~~i~~~~~~~v-~vIDp~~~~a~~~~~ 218 (261)
T PRK00865 177 GIDTLVL--GCTHYPLLKPEIQQVLGEGV-TLIDSGEAIARRVAR 218 (261)
T ss_pred CCCEEEE--CCcCHHHHHHHHHHHcCCCC-EEECCHHHHHHHHHH
Confidence 4676655 89999999999999998543 567888887776653
No 275
>PLN02192 3-ketoacyl-CoA synthase
Probab=21.71 E-value=2.3e+02 Score=33.15 Aligned_cols=56 Identities=13% Similarity=0.202 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCC-CCChHHHHHHHHhhcCCC
Q 003056 303 FEQISAPILERVKRPLEKALAETGLSVEDVHMVEVVGS-SSRVPAIIKILTEFFGKE 358 (852)
Q Consensus 303 fe~l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG-~sriP~v~~~l~~~fg~~ 358 (852)
+++..++...-+...++++|+++|+++++||.|+.... ....|.+-.+|.+.+|..
T Consensus 169 ~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lGlr 225 (511)
T PLN02192 169 MAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLR 225 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhCCC
Confidence 44444555555667888999999999999998876532 235899999999999853
No 276
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=21.70 E-value=3e+02 Score=24.01 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhcCCCccHHHHH
Q 003056 649 VTDSERELFTSKLQETEDWLYEDGEDETKGVYV 681 (852)
Q Consensus 649 ~~~~er~~i~~~l~e~~~WL~~dg~~a~~~~~~ 681 (852)
+-|+-+..|...+.++++||.........+.++
T Consensus 56 mipd~~~RL~~a~~~L~~~l~~~~~~ee~~~ak 88 (90)
T PF02970_consen 56 MIPDCQQRLEKAVEDLEEFLEEEEGLEELEEAK 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHCcCchhHHHHh
Confidence 346677888889999999997654444444443
No 277
>PRK14878 UGMP family protein; Provisional
Probab=21.49 E-value=2.3e+02 Score=31.13 Aligned_cols=63 Identities=25% Similarity=0.274 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHH------HHHHhhcCCCCcccCCchhHHHh
Q 003056 308 APILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAII------KILTEFFGKEPRRTMNASECVAR 371 (852)
Q Consensus 308 ~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~------~~l~~~fg~~v~~~~n~deava~ 371 (852)
..-.+.+...|+++|++++++..+||.|.++-|-...+.++ +.|...++.++ ..+|-.++=+.
T Consensus 42 ~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG~~~~lrvg~~~Ak~la~~~~~p~-~~v~h~~~Ha~ 110 (323)
T PRK14878 42 QHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPGLGPALRVGATAARALALKYNKPL-VPVNHCIAHIE 110 (323)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccchHHHHHHHHHHHHHhCCCc-cccchHHHHHH
Confidence 34556777889999999999999999999998776666665 34444556554 45565555444
No 278
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=21.47 E-value=1e+02 Score=35.35 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=15.9
Q ss_pred CceEEEEEeCCceeEEEEEEe
Q 003056 193 QLNVAFVDIGHASLQVCIAGF 213 (852)
Q Consensus 193 ~~~vlv~D~GggT~dvsiv~~ 213 (852)
...+-++||||++++|+..--
T Consensus 163 ~~t~g~lDlGGaStQIaf~~~ 183 (434)
T PF01150_consen 163 SNTVGALDLGGASTQIAFEPS 183 (434)
T ss_dssp SS-EEEEEE-SSEEEEEEEET
T ss_pred CceEEEEecCCcceeeeeccC
Confidence 478999999999999996543
No 279
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=21.41 E-value=1.8e+02 Score=31.29 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=28.7
Q ss_pred CccEEEEeCCCCChHHHHHHHHhhcCC---------CCcccCCchhHHHhhHHHhh
Q 003056 331 DVHMVEVVGSSSRVPAIIKILTEFFGK---------EPRRTMNASECVARGCALQC 377 (852)
Q Consensus 331 ~I~~ViLvGG~sriP~v~~~l~~~fg~---------~v~~~~n~deava~GAa~~a 377 (852)
+.+.|+|-||.+..+.+.+.|++.+.. .+......+.++++|||..+
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 457788877766655555555555421 12233345678899999765
No 280
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=21.40 E-value=1.9e+03 Score=28.53 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 003056 597 GMLPVDVQKAVEKEFEMA 614 (852)
Q Consensus 597 ~ls~~ei~~~~~~~~~~~ 614 (852)
+.+++..+.+...+..|.
T Consensus 774 ~~s~~~v~~le~~l~~~~ 791 (1293)
T KOG0996|consen 774 GVSKESVEKLERALSKMS 791 (1293)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 567777777766666553
No 281
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=21.39 E-value=85 Score=31.93 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=16.6
Q ss_pred EEEEEcCccceEEEEEECCc
Q 003056 3 VVGFDLGNESCIVAVARQRG 22 (852)
Q Consensus 3 viGID~GTt~s~va~~~~~~ 22 (852)
+|-||+|+|+++++++.++.
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~ 20 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDK 20 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTE
T ss_pred CEEEEECCCeEEEEEEECCE
Confidence 57899999999999998764
No 282
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=21.37 E-value=80 Score=36.14 Aligned_cols=62 Identities=26% Similarity=0.258 Sum_probs=33.3
Q ss_pred HHHHHHHHHHH--Hc---CCcc------eeeechhHHHHHHhhhhcCCCCCCCC-ceEEEEEeCCceeEEEEEE
Q 003056 151 LQRRAVIDAAT--IA---GLHP------LRLFHETTATALAYGIYKTDLPENDQ-LNVAFVDIGHASLQVCIAG 212 (852)
Q Consensus 151 ~qR~al~~Aa~--~A---Gl~~------~~li~Ep~AAAl~y~~~~~~~~~~~~-~~vlv~D~GggT~dvsiv~ 212 (852)
..|+++++... +. |++. ..++.-|.|+..+.-+-........+ ..+|++|+||-|||+--+.
T Consensus 194 paR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VDIGGATTDvhSv~ 267 (463)
T TIGR01319 194 AAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILIDIGGATTDVHSAA 267 (463)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEEcCccccchhhcc
Confidence 46777777632 21 4442 23455555554333222221111112 3499999999999986543
No 283
>PLN02914 hexokinase
Probab=21.25 E-value=2.1e+02 Score=33.34 Aligned_cols=24 Identities=13% Similarity=0.092 Sum_probs=21.5
Q ss_pred CceEEEEEeCCceeEEEEEEeeCC
Q 003056 193 QLNVAFVDIGHASLQVCIAGFKKG 216 (852)
Q Consensus 193 ~~~vlv~D~GggT~dvsiv~~~~~ 216 (852)
...+|.+|+||.++-|..|++.++
T Consensus 94 ~G~fLAlDlGGTNfRV~~V~L~g~ 117 (490)
T PLN02914 94 KGLFYALDLGGTNFRVLRVQLGGK 117 (490)
T ss_pred eeEEEEEecCCceEEEEEEEecCC
Confidence 557999999999999999999873
No 284
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=20.76 E-value=4.6e+02 Score=30.28 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCc--cEEEEeCCCCChHHHHHHHHhhc---CCCC--cccCCchhHHHhhHHHhhhhhcCCC
Q 003056 312 ERVKRPLEKALAETGLSVEDV--HMVEVVGSSSRVPAIIKILTEFF---GKEP--RRTMNASECVARGCALQCAILSPTF 384 (852)
Q Consensus 312 ~~i~~~i~~~l~~a~~~~~~I--~~ViLvGG~sriP~v~~~l~~~f---g~~v--~~~~n~deava~GAa~~aa~ls~~~ 384 (852)
+.+..+|++..+.||+.+++| +.++++|..+++.-+++.++..= |.-+ ...++-+.-++ |-|-.++.++. .
T Consensus 66 ~~i~~~V~~ey~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse-E 143 (475)
T PRK10719 66 AAIKELIEEEYQKAGIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE-E 143 (475)
T ss_pred HHHHHHHHHHHHHcCCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh-h
Confidence 567788899999999999988 59999999999999999998732 2222 13344433333 44444455553 3
Q ss_pred cccceEEeee
Q 003056 385 KVREFQVNES 394 (852)
Q Consensus 385 ~~~~~~~~d~ 394 (852)
+-.-+.+.|+
T Consensus 144 ke~gVa~IDI 153 (475)
T PRK10719 144 RNTRVLNIDI 153 (475)
T ss_pred ccCceEEEEe
Confidence 3333444443
No 285
>PRK09604 UGMP family protein; Validated
Probab=20.73 E-value=2e+02 Score=31.73 Aligned_cols=65 Identities=23% Similarity=0.231 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHHHH------HhhcCCCCcccCCchhHHHhhHH
Q 003056 309 PILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIKIL------TEFFGKEPRRTMNASECVARGCA 374 (852)
Q Consensus 309 ~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~~l------~~~fg~~v~~~~n~deava~GAa 374 (852)
.-.+.+...|+++|+.++++..+|+.|.+..|-...+.++--+ ...++.++ ..++-.++-|..|.
T Consensus 50 ~H~~~l~~~i~~~L~~~~~~~~did~iavt~GPG~~tglrvg~~~Ak~La~~~~ipl-~~v~h~~~ha~~a~ 120 (332)
T PRK09604 50 AHVENIVPLIEEALKEAGLTLEDIDAIAVTAGPGLVGALLVGVSFAKALALALNKPL-IGVNHLEGHLLAPF 120 (332)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHHhHHHHHHHHHHHHHHhCCCE-EeecCHHHHHHhhh
Confidence 3456777889999999999999999999999998888875433 33445543 45566666665443
No 286
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=20.67 E-value=5.8e+02 Score=30.07 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHH------HHHhhcCCCCcccCCchhHHHh
Q 003056 308 APILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIK------ILTEFFGKEPRRTMNASECVAR 371 (852)
Q Consensus 308 ~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~------~l~~~fg~~v~~~~n~deava~ 371 (852)
..-.+.+..+|+++|++++++..+||.|-++.|-...+.++- .|...++.++ ..++-.+|=+.
T Consensus 46 ~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~gPg~~~~l~vg~~~ak~la~~~~~~~-~~v~h~~aH~~ 114 (535)
T PRK09605 46 EHHAEAIPKVIKEALEEAGLKPEDIDLVAFSQGPGLGPCLRVVATAARALALSLDVPL-IGVNHCVAHVE 114 (535)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHhhCCEEEECCCCCcHhhHHHHHHHHHHHHHHhCCCe-ecccHHHHHHH
Confidence 345567778899999999999999999999999888888873 3333445554 45565555443
No 287
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=20.67 E-value=2.7e+02 Score=30.24 Aligned_cols=67 Identities=15% Similarity=0.064 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccEEEEeCCCCChHHHHH------HHHhhcCCCCcccCCchhHHHhhH
Q 003056 306 ISAPILERVKRPLEKALAETGLSVEDVHMVEVVGSSSRVPAIIK------ILTEFFGKEPRRTMNASECVARGC 373 (852)
Q Consensus 306 l~~~~~~~i~~~i~~~l~~a~~~~~~I~~ViLvGG~sriP~v~~------~l~~~fg~~v~~~~n~deava~GA 373 (852)
....-.+.+..+|+++|+.++++..+|+.|.+.-|-...+.++- .|...++.++ ..++..++-+.-+
T Consensus 44 ~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG~~tglrvg~~~Ak~la~~~~~p~-~~v~hl~~ha~~a 116 (305)
T TIGR00329 44 ASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPGLGGSLRVGATFARSLALSLDKPL-IGVNHLLGHIYAP 116 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCchhhHHHHHHHHHHHHHHhCCCE-eecccHHHHHHHh
Confidence 34456677888999999999999999999999999998888873 3333445544 4556666665543
No 288
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=20.65 E-value=1.6e+03 Score=27.59 Aligned_cols=11 Identities=9% Similarity=0.250 Sum_probs=7.5
Q ss_pred cEEEEEcCCCC
Q 003056 139 DCCIGIPVYFT 149 (852)
Q Consensus 139 ~~VitVP~~f~ 149 (852)
-+|+-+|..|+
T Consensus 107 v~V~~LP~r~g 117 (717)
T PF10168_consen 107 VVVLELPRRWG 117 (717)
T ss_pred EEEEEeccccC
Confidence 36677787765
No 289
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=20.37 E-value=8.3e+02 Score=31.76 Aligned_cols=44 Identities=11% Similarity=0.129 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhHHHh
Q 003056 598 MLPVDVQKAVEKEFEMALQDRVMEETKDRKNAVEAYVYDMRNKL 641 (852)
Q Consensus 598 ls~~ei~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~L 641 (852)
+++.++-.+.........-+..+....+-...++..++.++..|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~nL~r~~d~l~el~~ql 195 (1179)
T TIGR02168 152 AKPEERRAIFEEAAGISKYKERRKETERKLERTRENLDRLEDIL 195 (1179)
T ss_pred CCHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555554444444444444444444444455555554
No 290
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=20.27 E-value=1.4e+03 Score=26.79 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhccchHHHHHHhhhcchHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Q 003056 679 VYVAKLEELKKQGDPIEERYKEFTDRSSVIDQLAYCINSYREAALSSDPKFDHIDIAEKQK 739 (852)
Q Consensus 679 ~~~~kl~~L~~~~~pi~~R~~e~~~rp~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~e~~~ 739 (852)
.+.+|...|.+.-.-+..|..+...+-+.++.+.+.+..........-+..+.+|.++-+.
T Consensus 91 ~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~lt~~eak~ 151 (514)
T TIGR03319 91 TLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKE 151 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3455555555555555555555555555555555544443332222234455667666544
No 291
>PLN02362 hexokinase
Probab=20.22 E-value=2.6e+02 Score=32.76 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=21.7
Q ss_pred CceEEEEEeCCceeEEEEEEeeCC
Q 003056 193 QLNVAFVDIGHASLQVCIAGFKKG 216 (852)
Q Consensus 193 ~~~vlv~D~GggT~dvsiv~~~~~ 216 (852)
...+|.+|+||.++-|..|++.++
T Consensus 94 ~G~fLAlDlGGTNfRV~~V~L~g~ 117 (509)
T PLN02362 94 IGTYYALDLGGTNFRVLRVQLGGQ 117 (509)
T ss_pred ceeEEEEecCCceEEEEEEEecCC
Confidence 566999999999999999999874
Done!