Query 003057
Match_columns 852
No_of_seqs 529 out of 3607
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 16:10:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03008 Phospholipase D delta 100.0 1E-186 2E-191 1594.3 73.4 812 32-852 5-868 (868)
2 PLN02270 phospholipase D alpha 100.0 3E-177 6E-182 1519.1 69.9 788 37-852 4-808 (808)
3 PLN02352 phospholipase D epsil 100.0 1E-168 2E-173 1447.1 67.7 736 38-852 7-758 (758)
4 KOG1329 Phospholipase D1 [Lipi 100.0 5E-149 1E-153 1274.4 56.8 785 5-852 36-853 (887)
5 PLN02866 phospholipase D 100.0 8.1E-95 1.8E-99 847.1 50.8 530 210-831 320-1059(1068)
6 PRK12452 cardiolipin synthetas 100.0 2.1E-49 4.6E-54 457.5 31.7 334 212-743 132-465 (509)
7 PRK01642 cls cardiolipin synth 100.0 2.5E-48 5.4E-53 448.4 32.0 330 212-743 108-439 (483)
8 PRK11263 cardiolipin synthase 100.0 9.4E-47 2E-51 423.7 32.3 342 215-769 3-344 (411)
9 COG1502 Cls Phosphatidylserine 100.0 3.4E-36 7.4E-41 346.5 31.8 335 217-743 57-394 (438)
10 PRK09428 pssA phosphatidylseri 100.0 8.8E-35 1.9E-39 328.9 30.5 352 218-743 23-395 (451)
11 PHA02820 phospholipase-D-like 100.0 1.7E-33 3.8E-38 317.6 29.9 323 250-742 26-361 (424)
12 PHA03003 palmytilated EEV memb 100.0 5.5E-33 1.2E-37 310.1 29.8 315 250-742 31-347 (369)
13 cd04015 C2_plant_PLD C2 domain 100.0 4.9E-29 1.1E-33 245.7 15.7 153 36-188 2-158 (158)
14 PF12357 PLD_C: Phospholipase 99.9 1.1E-25 2.5E-30 184.6 5.4 74 771-844 1-74 (74)
15 cd04016 C2_Tollip C2 domain pr 99.9 2.4E-22 5.3E-27 188.4 14.4 117 41-187 2-121 (121)
16 cd04013 C2_SynGAP_like C2 doma 99.9 8.2E-22 1.8E-26 189.8 15.6 129 32-194 5-145 (146)
17 cd08379 C2D_MCTP_PRT_plant C2 99.9 2.4E-21 5.1E-26 182.9 14.0 114 43-183 2-125 (126)
18 cd08682 C2_Rab11-FIP_classI C2 99.8 1.7E-20 3.7E-25 178.3 13.0 117 43-186 1-126 (126)
19 cd04042 C2A_MCTP_PRT C2 domain 99.8 5.2E-20 1.1E-24 173.7 15.1 119 43-189 2-121 (121)
20 cd08400 C2_Ras_p21A1 C2 domain 99.8 3.4E-19 7.3E-24 169.3 15.2 119 41-189 4-124 (126)
21 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 2.3E-19 4.9E-24 169.2 13.6 119 43-187 2-121 (121)
22 cd04019 C2C_MCTP_PRT_plant C2 99.8 2.9E-19 6.2E-24 174.6 13.7 123 42-191 1-135 (150)
23 PRK05443 polyphosphate kinase; 99.8 2.9E-18 6.3E-23 202.5 23.6 266 250-743 348-633 (691)
24 cd08681 C2_fungal_Inn1p-like C 99.8 4.3E-19 9.2E-24 166.6 11.5 116 41-187 1-118 (118)
25 cd04044 C2A_Tricalbin-like C2 99.8 2.3E-18 4.9E-23 163.0 13.1 121 41-189 2-124 (124)
26 cd04022 C2A_MCTP_PRT_plant C2 99.8 2.3E-18 5E-23 163.9 13.0 119 42-188 1-126 (127)
27 TIGR03705 poly_P_kin polyphosp 99.8 1.5E-17 3.2E-22 195.3 22.2 262 250-742 339-623 (672)
28 cd04014 C2_PKC_epsilon C2 doma 99.8 4.7E-18 1E-22 162.9 14.6 127 38-189 1-130 (132)
29 cd08377 C2C_MCTP_PRT C2 domain 99.8 4.4E-18 9.6E-23 159.9 14.1 117 41-187 1-118 (119)
30 cd08678 C2_C21orf25-like C2 do 99.8 4.6E-18 9.9E-23 161.6 14.1 122 43-192 1-124 (126)
31 cd08378 C2B_MCTP_PRT_plant C2 99.8 3.4E-18 7.3E-23 161.2 12.2 113 42-187 1-119 (121)
32 KOG1030 Predicted Ca2+-depende 99.8 2.7E-18 5.8E-23 164.5 9.8 99 37-162 2-101 (168)
33 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 1.1E-17 2.3E-22 157.9 13.7 118 42-186 1-120 (121)
34 cd04036 C2_cPLA2 C2 domain pre 99.7 1.1E-17 2.4E-22 157.3 13.2 113 43-187 2-117 (119)
35 cd08395 C2C_Munc13 C2 domain t 99.7 9.5E-18 2.1E-22 157.0 12.2 100 42-168 1-111 (120)
36 cd08391 C2A_C2C_Synaptotagmin_ 99.7 1.1E-17 2.5E-22 157.5 12.9 120 41-187 1-121 (121)
37 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 1.9E-17 4.2E-22 156.6 13.1 117 42-185 1-122 (123)
38 cd08376 C2B_MCTP_PRT C2 domain 99.7 3.2E-17 6.8E-22 153.4 14.4 113 42-188 1-115 (116)
39 cd08677 C2A_Synaptotagmin-13 C 99.7 8.6E-18 1.9E-22 155.4 10.1 99 40-167 13-118 (118)
40 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 2.9E-17 6.2E-22 157.6 13.0 120 42-188 1-133 (133)
41 cd08688 C2_KIAA0528-like C2 do 99.7 1.9E-17 4.1E-22 153.5 10.9 101 43-169 1-109 (110)
42 cd08373 C2A_Ferlin C2 domain f 99.7 5.3E-17 1.2E-21 154.5 14.2 106 85-193 12-121 (127)
43 cd08375 C2_Intersectin C2 doma 99.7 5.2E-17 1.1E-21 156.2 14.1 114 41-187 15-135 (136)
44 cd08685 C2_RGS-like C2 domain 99.7 1.2E-17 2.5E-22 157.0 9.3 102 39-167 10-119 (119)
45 cd08381 C2B_PI3K_class_II C2 d 99.7 2.3E-17 5E-22 155.7 11.1 101 40-167 12-121 (122)
46 cd04050 C2B_Synaptotagmin-like 99.7 3.3E-17 7.2E-22 150.5 11.7 98 43-169 2-102 (105)
47 cd04024 C2A_Synaptotagmin-like 99.7 5.6E-17 1.2E-21 154.4 13.2 121 41-186 1-127 (128)
48 cd04045 C2C_Tricalbin-like C2 99.7 6.9E-17 1.5E-21 152.0 11.9 104 41-171 1-105 (120)
49 cd04028 C2B_RIM1alpha C2 domai 99.7 6.1E-17 1.3E-21 156.5 11.8 107 39-170 27-139 (146)
50 cd04046 C2_Calpain C2 domain p 99.7 2E-16 4.4E-21 150.3 15.2 121 40-189 2-123 (126)
51 cd08394 C2A_Munc13 C2 domain f 99.7 9.3E-17 2E-21 149.9 12.2 97 41-168 2-100 (127)
52 cd08387 C2A_Synaptotagmin-8 C2 99.7 8E-17 1.7E-21 152.6 11.5 103 40-168 15-123 (124)
53 cd04018 C2C_Ferlin C2 domain t 99.7 5.6E-17 1.2E-21 158.0 10.7 113 42-168 1-116 (151)
54 cd08385 C2A_Synaptotagmin-1-5- 99.7 1.1E-16 2.3E-21 151.7 11.8 103 40-168 15-123 (124)
55 cd04039 C2_PSD C2 domain prese 99.7 9E-17 2E-21 148.2 11.0 96 41-159 1-99 (108)
56 cd04029 C2A_SLP-4_5 C2 domain 99.7 1.2E-16 2.7E-21 151.5 11.7 103 40-167 14-124 (125)
57 cd08407 C2B_Synaptotagmin-13 C 99.7 3.9E-17 8.5E-22 156.7 7.9 114 40-179 14-135 (138)
58 cd04051 C2_SRC2_like C2 domain 99.7 8.7E-17 1.9E-21 152.6 10.0 113 42-183 1-125 (125)
59 cd08393 C2A_SLP-1_2 C2 domain 99.7 8.6E-17 1.9E-21 152.6 9.9 102 41-167 15-124 (125)
60 cd04041 C2A_fungal C2 domain f 99.7 1.2E-16 2.7E-21 148.3 10.0 100 41-168 1-107 (111)
61 cd08406 C2B_Synaptotagmin-12 C 99.7 8.5E-17 1.8E-21 154.4 8.4 110 41-178 15-132 (136)
62 cd08680 C2_Kibra C2 domain fou 99.7 1.9E-16 4.1E-21 149.4 10.2 102 40-167 13-124 (124)
63 cd04010 C2B_RasA3 C2 domain se 99.7 3.5E-16 7.6E-21 152.1 12.1 103 42-172 1-125 (148)
64 cd08382 C2_Smurf-like C2 domai 99.7 4.6E-16 1E-20 147.2 12.4 116 43-185 2-122 (123)
65 cd04043 C2_Munc13_fungal C2 do 99.7 8.4E-16 1.8E-20 146.0 14.0 113 42-188 2-121 (126)
66 cd04052 C2B_Tricalbin-like C2 99.7 3.2E-16 7E-21 145.5 10.7 101 84-190 9-111 (111)
67 cd04017 C2D_Ferlin C2 domain f 99.7 1.1E-15 2.4E-20 147.1 14.6 118 42-190 2-134 (135)
68 cd08384 C2B_Rabphilin_Doc2 C2 99.7 1.7E-16 3.7E-21 152.3 8.9 107 41-175 13-127 (133)
69 cd04027 C2B_Munc13 C2 domain s 99.7 6.7E-16 1.5E-20 146.9 12.9 114 42-185 2-127 (127)
70 cd04040 C2D_Tricalbin-like C2 99.7 6.3E-16 1.4E-20 144.3 12.1 105 43-173 1-107 (115)
71 cd04031 C2A_RIM1alpha C2 domai 99.7 5.7E-16 1.2E-20 146.8 11.3 100 41-167 16-124 (125)
72 cd08392 C2A_SLP-3 C2 domain fi 99.7 4.6E-16 1E-20 148.0 10.3 102 41-167 15-127 (128)
73 cd08404 C2B_Synaptotagmin-4 C2 99.6 3.3E-16 7.2E-21 150.9 9.3 108 40-175 14-129 (136)
74 cd08692 C2B_Tac2-N C2 domain s 99.6 3.9E-16 8.5E-21 147.9 9.5 108 41-175 14-129 (135)
75 cd08402 C2B_Synaptotagmin-1 C2 99.6 2.3E-16 4.9E-21 152.1 8.0 113 40-180 14-134 (136)
76 cd04030 C2C_KIAA1228 C2 domain 99.6 7.1E-16 1.5E-20 146.7 11.2 101 41-167 16-126 (127)
77 cd04049 C2_putative_Elicitor-r 99.6 7.8E-16 1.7E-20 145.8 11.3 101 41-168 1-107 (124)
78 cd04011 C2B_Ferlin C2 domain s 99.6 1.1E-15 2.3E-20 142.0 11.8 97 42-169 5-110 (111)
79 cd08676 C2A_Munc13-like C2 dom 99.6 6E-16 1.3E-20 151.0 10.5 97 41-167 28-153 (153)
80 cd08388 C2A_Synaptotagmin-4-11 99.6 1.3E-15 2.9E-20 145.0 12.2 102 41-167 16-126 (128)
81 cd08403 C2B_Synaptotagmin-3-5- 99.6 3.3E-16 7.2E-21 150.5 8.1 108 40-175 13-128 (134)
82 cd08386 C2A_Synaptotagmin-7 C2 99.6 1E-15 2.2E-20 145.2 11.3 102 41-168 16-124 (125)
83 cd08405 C2B_Synaptotagmin-7 C2 99.6 5.4E-16 1.2E-20 149.5 9.4 110 41-178 15-132 (136)
84 cd08521 C2A_SLP C2 domain firs 99.6 1E-15 2.2E-20 144.7 11.0 103 40-167 13-123 (123)
85 cd08383 C2A_RasGAP C2 domain ( 99.6 3.4E-15 7.3E-20 139.8 14.2 112 43-187 2-117 (117)
86 cd08690 C2_Freud-1 C2 domain f 99.6 3.4E-15 7.4E-20 145.5 13.7 101 85-188 22-137 (155)
87 cd08390 C2A_Synaptotagmin-15-1 99.6 2.9E-15 6.3E-20 141.6 11.6 104 40-168 13-122 (123)
88 cd00276 C2B_Synaptotagmin C2 d 99.6 9.9E-16 2.1E-20 146.9 8.2 107 41-175 14-128 (134)
89 cd08410 C2B_Synaptotagmin-17 C 99.6 8.9E-16 1.9E-20 147.7 7.7 109 41-177 14-131 (135)
90 cd04032 C2_Perforin C2 domain 99.6 4E-15 8.6E-20 140.8 11.6 88 41-156 28-118 (127)
91 cd08389 C2A_Synaptotagmin-14_1 99.6 2.8E-15 6.1E-20 142.0 10.3 101 41-168 16-123 (124)
92 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.6 2.7E-15 5.9E-20 148.6 10.5 103 39-167 25-136 (162)
93 cd08408 C2B_Synaptotagmin-14_1 99.6 1.3E-15 2.8E-20 146.9 7.4 110 40-176 14-132 (138)
94 cd08675 C2B_RasGAP C2 domain s 99.6 4.3E-15 9.4E-20 143.1 11.1 101 43-170 1-121 (137)
95 KOG0696 Serine/threonine prote 99.6 3.8E-16 8.3E-21 166.5 4.0 105 40-171 179-290 (683)
96 cd04038 C2_ArfGAP C2 domain pr 99.6 5E-15 1.1E-19 143.6 11.5 93 41-161 2-95 (145)
97 cd00275 C2_PLC_like C2 domain 99.6 1.9E-14 4.2E-19 136.8 13.6 118 42-187 3-127 (128)
98 cd08409 C2B_Synaptotagmin-15 C 99.6 2.7E-15 5.9E-20 144.7 7.5 108 41-175 15-130 (137)
99 cd04026 C2_PKC_alpha_gamma C2 99.6 8.3E-15 1.8E-19 140.2 10.6 107 38-171 10-123 (131)
100 cd08686 C2_ABR C2 domain in th 99.6 3.6E-14 7.8E-19 130.9 12.6 79 43-153 1-91 (118)
101 cd04037 C2E_Ferlin C2 domain f 99.6 3.3E-14 7.2E-19 134.7 12.2 116 43-189 2-120 (124)
102 cd04021 C2_E3_ubiquitin_ligase 99.5 4.8E-14 1E-18 133.8 12.7 116 42-185 3-124 (125)
103 cd04009 C2B_Munc13-like C2 dom 99.5 1.9E-14 4.1E-19 138.1 9.7 91 41-157 16-118 (133)
104 KOG1028 Ca2+-dependent phospho 99.5 7.4E-14 1.6E-18 158.1 16.1 175 39-246 165-349 (421)
105 cd00138 PLDc Phospholipase D. 99.5 1.1E-13 2.4E-18 139.1 14.3 144 250-462 21-169 (176)
106 cd04048 C2A_Copine C2 domain f 99.5 3.9E-14 8.5E-19 133.4 9.7 97 46-168 5-113 (120)
107 cd04035 C2A_Rabphilin_Doc2 C2 99.5 8.6E-14 1.9E-18 131.6 11.9 100 41-166 15-122 (123)
108 cd08691 C2_NEDL1-like C2 domai 99.5 1.8E-13 3.8E-18 131.4 13.2 115 42-185 2-136 (137)
109 PHA02820 phospholipase-D-like 99.5 1.9E-13 4.2E-18 155.1 13.8 146 504-740 5-150 (424)
110 KOG1011 Neurotransmitter relea 99.5 3.9E-14 8.5E-19 156.5 4.9 151 15-197 272-435 (1283)
111 PLN03200 cellulose synthase-in 99.4 2.4E-13 5.3E-18 173.2 10.6 118 39-188 1978-2100(2102)
112 PHA03003 palmytilated EEV memb 99.4 9.5E-13 2.1E-17 147.6 13.8 139 251-462 217-363 (369)
113 PRK12452 cardiolipin synthetas 99.4 5.8E-13 1.3E-17 154.9 12.0 153 219-462 328-480 (509)
114 PRK13912 nuclease NucT; Provis 99.4 6.2E-12 1.3E-16 126.6 16.2 140 250-462 33-174 (177)
115 cd04047 C2B_Copine C2 domain s 99.4 1.8E-12 4E-17 120.0 9.4 87 45-158 4-101 (110)
116 cd00138 PLDc Phospholipase D. 99.4 3.5E-12 7.5E-17 128.3 10.8 130 543-742 20-152 (176)
117 KOG2059 Ras GTPase-activating 99.3 1.3E-12 2.9E-17 147.5 8.2 123 41-193 5-130 (800)
118 PRK13912 nuclease NucT; Provis 99.3 8E-12 1.7E-16 125.8 9.9 126 544-743 33-159 (177)
119 PF00168 C2: C2 domain; Inter 99.3 1.1E-11 2.5E-16 108.1 9.4 81 43-149 1-85 (85)
120 COG5038 Ca2+-dependent lipid-b 99.3 1.6E-11 3.5E-16 146.1 11.1 131 41-199 436-568 (1227)
121 KOG3603 Predicted phospholipas 99.2 7.7E-09 1.7E-13 112.4 29.8 174 216-464 46-227 (456)
122 PF13091 PLDc_2: PLD-like doma 99.2 3.3E-11 7.1E-16 114.1 9.1 113 549-742 1-113 (126)
123 KOG1028 Ca2+-dependent phospho 99.2 1.7E-11 3.7E-16 139.0 7.9 113 40-180 297-417 (421)
124 cd00030 C2 C2 domain. The C2 d 99.2 6E-11 1.3E-15 105.7 10.0 99 43-167 1-102 (102)
125 smart00239 C2 Protein kinase C 99.2 9.8E-11 2.1E-15 104.9 10.4 93 42-160 1-97 (101)
126 COG5038 Ca2+-dependent lipid-b 99.2 4.1E-11 8.9E-16 142.7 9.5 133 30-190 1029-1163(1227)
127 PLN02223 phosphoinositide phos 99.2 1.5E-10 3.2E-15 131.5 13.4 122 40-186 408-535 (537)
128 PRK01642 cls cardiolipin synth 99.1 2.7E-10 5.9E-15 132.4 12.5 152 219-462 302-454 (483)
129 PLN02952 phosphoinositide phos 99.1 4.9E-10 1.1E-14 130.0 13.6 122 40-187 469-596 (599)
130 PF13091 PLDc_2: PLD-like doma 99.1 3.5E-10 7.6E-15 107.0 10.3 124 255-459 1-126 (126)
131 PLN02230 phosphoinositide phos 99.0 1.2E-09 2.6E-14 126.5 12.1 123 41-187 469-597 (598)
132 cd08689 C2_fungal_Pkc1p C2 dom 99.0 8.4E-10 1.8E-14 98.5 7.9 87 43-156 1-87 (109)
133 cd08374 C2F_Ferlin C2 domain s 99.0 1.5E-09 3.3E-14 103.1 10.1 95 43-159 2-125 (133)
134 PLN02222 phosphoinositide phos 99.0 2.2E-09 4.7E-14 124.3 13.5 123 41-187 452-580 (581)
135 PLN02228 Phosphoinositide phos 99.0 4.5E-09 9.7E-14 121.4 13.2 125 41-189 431-562 (567)
136 PRK11263 cardiolipin synthase 99.0 3.3E-09 7.2E-14 120.2 11.8 134 250-461 206-341 (411)
137 KOG0169 Phosphoinositide-speci 98.9 2.7E-09 5.8E-14 123.4 10.6 121 42-188 617-744 (746)
138 PF00614 PLDc: Phospholipase D 98.8 1.2E-09 2.5E-14 74.0 0.8 27 365-399 2-28 (28)
139 PRK05443 polyphosphate kinase; 98.8 1.8E-08 4E-13 120.0 11.4 119 547-744 351-481 (691)
140 KOG3603 Predicted phospholipas 98.8 1.1E-07 2.3E-12 103.7 15.0 158 251-464 277-441 (456)
141 KOG1031 Predicted Ca2+-depende 98.7 2E-08 4.4E-13 110.8 8.2 117 41-186 3-134 (1169)
142 KOG1264 Phospholipase C [Lipid 98.7 5.2E-08 1.1E-12 111.6 10.8 121 41-192 1065-1193(1267)
143 PRK09428 pssA phosphatidylseri 98.6 1.3E-07 2.8E-12 108.2 11.3 138 544-742 35-178 (451)
144 smart00155 PLDc Phospholipase 98.6 5.5E-08 1.2E-12 66.6 3.2 26 700-725 3-28 (28)
145 KOG1328 Synaptic vesicle prote 98.5 1.7E-08 3.8E-13 114.3 0.5 120 42-189 115-302 (1103)
146 KOG1328 Synaptic vesicle prote 98.5 3.8E-08 8.1E-13 111.7 1.6 93 38-156 944-1048(1103)
147 COG1502 Cls Phosphatidylserine 98.4 1.4E-06 3.1E-11 100.6 12.7 135 253-462 273-409 (438)
148 PF00614 PLDc: Phospholipase D 98.2 4.3E-07 9.3E-12 61.6 1.0 26 700-725 3-28 (28)
149 KOG3964 Phosphatidylglycerolph 98.0 0.00037 8.1E-09 75.5 18.4 129 249-401 38-171 (469)
150 cd08683 C2_C2cd3 C2 domain fou 98.0 1E-05 2.2E-10 74.8 5.0 80 88-167 33-143 (143)
151 KOG2059 Ras GTPase-activating 97.9 9.7E-06 2.1E-10 93.0 5.9 106 85-190 148-278 (800)
152 KOG1013 Synaptic vesicle prote 97.7 4.8E-05 1E-09 80.6 5.6 101 40-168 232-340 (362)
153 PF13918 PLDc_3: PLD-like doma 97.6 0.00046 9.9E-09 68.4 11.4 57 251-307 83-140 (177)
154 KOG0905 Phosphoinositide 3-kin 97.6 3.4E-05 7.3E-10 92.5 3.9 104 38-167 1521-1633(1639)
155 PLN02964 phosphatidylserine de 97.6 3.9E-05 8.5E-10 90.6 4.2 102 39-173 52-157 (644)
156 KOG1326 Membrane-associated pr 97.5 4.6E-05 9.9E-10 90.6 2.8 86 42-153 614-702 (1105)
157 KOG1011 Neurotransmitter relea 97.5 0.00022 4.9E-09 80.6 7.5 100 42-168 1126-1236(1283)
158 KOG1013 Synaptic vesicle prote 97.5 2.4E-05 5.2E-10 82.8 -0.2 90 42-158 94-193 (362)
159 TIGR03705 poly_P_kin polyphosp 97.4 0.00088 1.9E-08 80.1 12.4 117 547-742 342-470 (672)
160 PF07894 DUF1669: Protein of u 97.4 0.0029 6.2E-08 67.3 14.7 161 218-458 117-277 (284)
161 smart00155 PLDc Phospholipase 97.4 0.00012 2.7E-09 50.0 2.7 25 366-398 3-27 (28)
162 PLN02866 phospholipase D 97.4 0.00045 9.8E-09 84.3 8.7 61 544-611 344-404 (1068)
163 cd08684 C2A_Tac2-N C2 domain f 97.2 0.00018 3.9E-09 62.0 2.2 97 44-167 2-103 (103)
164 KOG2060 Rab3 effector RIM1 and 96.5 0.0022 4.9E-08 69.4 4.3 108 40-172 268-382 (405)
165 PF07894 DUF1669: Protein of u 96.5 0.018 3.9E-07 61.4 10.6 132 543-740 133-264 (284)
166 KOG1265 Phospholipase C [Lipid 96.4 0.0089 1.9E-07 70.7 8.5 102 38-175 700-811 (1189)
167 KOG1326 Membrane-associated pr 96.2 0.0016 3.5E-08 78.0 1.1 85 83-169 222-317 (1105)
168 PF13918 PLDc_3: PLD-like doma 96.2 0.045 9.7E-07 54.5 10.8 56 546-615 84-145 (177)
169 cd08398 C2_PI3K_class_I_alpha 96.0 0.036 7.7E-07 54.7 9.3 85 39-153 6-104 (158)
170 PF11495 Regulator_TrmB: Archa 95.8 0.056 1.2E-06 57.0 10.1 49 250-309 10-58 (233)
171 KOG1329 Phospholipase D1 [Lipi 95.5 0.048 1E-06 65.6 9.4 60 242-307 558-627 (887)
172 COG0855 Ppk Polyphosphate kina 95.4 2.6 5.6E-05 49.6 22.3 96 246-378 348-448 (696)
173 PLN02352 phospholipase D epsil 95.4 0.042 9E-07 66.1 8.3 84 218-307 426-519 (758)
174 KOG3837 Uncharacterized conser 95.4 0.013 2.7E-07 64.2 3.4 98 88-188 388-503 (523)
175 KOG1327 Copine [Signal transdu 95.3 0.024 5.1E-07 65.1 5.4 70 86-156 155-235 (529)
176 PF12416 DUF3668: Cep120 prote 95.0 0.2 4.3E-06 55.5 11.4 117 43-189 2-133 (340)
177 PF10358 NT-C2: N-terminal C2 94.8 0.52 1.1E-05 45.4 12.7 118 42-193 8-140 (143)
178 COG3886 Predicted HKD family n 94.5 0.59 1.3E-05 46.7 12.2 141 249-461 38-179 (198)
179 cd08693 C2_PI3K_class_I_beta_d 94.4 0.19 4.2E-06 50.4 9.0 71 40-138 7-86 (173)
180 cd08397 C2_PI3K_class_III C2 d 94.4 0.13 2.8E-06 50.8 7.5 67 86-152 28-104 (159)
181 PLN02270 phospholipase D alpha 93.0 0.23 5.1E-06 60.1 7.7 58 249-307 498-569 (808)
182 PLN03008 Phospholipase D delta 92.5 0.83 1.8E-05 55.7 11.2 58 250-307 567-633 (868)
183 cd04012 C2A_PI3K_class_II C2 d 92.0 0.56 1.2E-05 47.0 7.9 88 39-152 6-116 (171)
184 cd08380 C2_PI3K_like C2 domain 91.5 0.85 1.8E-05 44.9 8.5 86 41-153 8-105 (156)
185 PF00792 PI3K_C2: Phosphoinosi 91.1 0.72 1.6E-05 44.6 7.4 66 89-154 3-84 (142)
186 KOG1452 Predicted Rho GTPase-a 90.9 0.39 8.5E-06 51.1 5.5 81 36-141 46-126 (442)
187 cd08399 C2_PI3K_class_I_gamma 90.4 1.5 3.4E-05 44.0 9.1 50 89-138 31-88 (178)
188 cd08687 C2_PKN-like C2 domain 89.7 2 4.3E-05 37.9 7.9 65 88-156 9-73 (98)
189 PF13090 PP_kinase_C: Polyphos 89.6 1.4 3E-05 48.5 8.6 137 250-457 18-160 (352)
190 PF15627 CEP76-C2: CEP76 C2 do 89.4 1.8 3.8E-05 42.4 8.3 100 90-190 36-152 (156)
191 KOG1327 Copine [Signal transdu 87.1 0.75 1.6E-05 53.2 4.8 85 99-186 40-130 (529)
192 smart00142 PI3K_C2 Phosphoinos 87.1 3.3 7.1E-05 37.5 8.1 51 88-138 32-91 (100)
193 PF15625 CC2D2AN-C2: CC2D2A N- 85.6 4 8.6E-05 40.8 8.6 67 88-154 37-105 (168)
194 cd08694 C2_Dock-A C2 domains f 84.8 5 0.00011 40.9 8.8 52 101-152 54-113 (196)
195 PF14429 DOCK-C2: C2 domain in 84.0 3.5 7.6E-05 41.7 7.6 53 102-154 61-120 (184)
196 PF09565 RE_NgoFVII: NgoFVII r 83.9 5.6 0.00012 43.4 9.4 40 700-741 79-123 (296)
197 cd08695 C2_Dock-B C2 domains f 82.7 2.6 5.6E-05 42.7 5.8 51 102-152 55-111 (189)
198 KOG0694 Serine/threonine prote 79.6 0.5 1.1E-05 55.8 -0.5 92 88-188 28-121 (694)
199 PF13090 PP_kinase_C: Polyphos 77.2 3.6 7.8E-05 45.3 5.1 92 590-743 52-150 (352)
200 KOG4269 Rac GTPase-activating 75.0 1.5 3.3E-05 52.9 1.6 119 34-192 752-886 (1112)
201 cd08679 C2_DOCK180_related C2 73.8 8.7 0.00019 38.7 6.6 50 103-153 56-114 (178)
202 PF11618 DUF3250: Protein of u 73.2 19 0.00041 33.1 8.0 93 91-187 2-104 (107)
203 cd08696 C2_Dock-C C2 domains f 70.5 16 0.00035 36.8 7.5 53 100-152 54-116 (179)
204 COG3886 Predicted HKD family n 67.7 42 0.0009 34.0 9.5 51 544-613 39-90 (198)
205 cd08697 C2_Dock-D C2 domains f 62.0 24 0.00052 35.8 6.9 39 100-138 56-97 (185)
206 PF06087 Tyr-DNA_phospho: Tyro 61.3 3.8 8.2E-05 47.6 1.2 40 699-739 346-402 (443)
207 PF11495 Regulator_TrmB: Archa 58.4 24 0.00052 37.1 6.6 50 543-612 9-58 (233)
208 COG0855 Ppk Polyphosphate kina 57.9 30 0.00065 41.2 7.5 41 700-742 436-483 (696)
209 cd05137 RasGAP_CLA2_BUD2 CLA2/ 48.9 18 0.00038 41.3 3.9 45 144-190 1-46 (395)
210 PTZ00447 apical membrane antig 41.3 99 0.0022 34.0 7.7 92 89-185 75-170 (508)
211 PF06219 DUF1005: Protein of u 33.2 2.6E+02 0.0056 31.9 9.6 102 86-189 34-168 (460)
212 PF06415 iPGM_N: BPG-independe 29.0 1.1E+02 0.0025 31.9 5.8 50 253-311 14-72 (223)
213 PF10686 DUF2493: Protein of u 26.6 1.5E+02 0.0032 25.1 5.0 56 237-305 5-62 (71)
214 KOG3543 Ca2+-dependent activat 26.6 4.2E+02 0.0091 31.6 10.0 115 39-186 339-457 (1218)
215 PRK05434 phosphoglyceromutase; 25.3 1.6E+02 0.0036 34.7 6.9 50 250-307 96-149 (507)
216 PF06087 Tyr-DNA_phospho: Tyro 24.5 50 0.0011 38.4 2.4 38 700-740 100-141 (443)
217 KOG3964 Phosphatidylglycerolph 23.9 1.5E+02 0.0033 33.4 5.7 54 544-613 39-92 (469)
218 PF14924 DUF4497: Protein of u 21.2 1.4E+02 0.0031 27.5 4.3 58 128-188 29-104 (112)
219 TIGR01307 pgm_bpd_ind 2,3-bisp 20.9 2.2E+02 0.0047 33.6 6.7 46 254-307 93-145 (501)
220 TIGR00230 sfsA sugar fermentat 20.9 3.3E+02 0.0071 28.8 7.4 54 252-307 159-213 (232)
221 PF09345 DUF1987: Domain of un 20.8 1.5E+02 0.0033 26.8 4.3 62 242-309 15-84 (99)
222 KOG0904 Phosphatidylinositol 3 20.2 2.2E+02 0.0048 35.4 6.5 48 88-135 361-419 (1076)
223 PF07615 Ykof: YKOF-related Fa 20.0 2.6E+02 0.0057 24.2 5.5 66 219-306 3-71 (81)
No 1
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=1.1e-186 Score=1594.34 Aligned_cols=812 Identities=52% Similarity=0.921 Sum_probs=738.9
Q ss_pred CCceeeeeceEEEEEEEEeeCCCCCCccccccccccccc--cc------ccc----cccc----ccCCCCCCCCcEEEEE
Q 003057 32 GSLKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKL--NV------KVT----SKIE----SHLSDKITSDPYVTVS 95 (852)
Q Consensus 32 ~~~~~~~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~--~~------~~~----~~~~----~~~~~~g~~DpYv~v~ 95 (852)
-+.+++||||+|++||+||++|+|||+++++.+++|..+ .. +.. ...+ .++.+.+++||||+|+
T Consensus 5 ~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~ 84 (868)
T PLN03008 5 VSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVV 84 (868)
T ss_pred cccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEE
Confidence 457888999999999999999999999999888887521 11 000 1111 1245678999999999
Q ss_pred ECCEEEeeeeeecCCCCCeeeeEEEEeecCCCcEEEEEEEecCCcCCceeeeEEEeeeeecCCCeeeeeeecccCCCCCC
Q 003057 96 ICGAVIGRTFVISNSESPVWMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (852)
Q Consensus 96 l~~~~~~rT~vi~~t~nP~WnE~F~~~v~~~~~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~ 175 (852)
|++++++||+|++|+.||+|||+|+|+|+|..+.|+|+|||+|.+++++||++.|||++|.+|..++.|++|++..++|+
T Consensus 85 Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~ 164 (868)
T PLN03008 85 VPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPP 164 (868)
T ss_pred ECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeeEEeeccccccccccccCCCCCcCCCCCCCCccccCceeEEeecccccCCCccceeccCCcccCchhHHHHH
Q 003057 176 KAGAVLSLSIQYTPVENMSLYYRGVGSGPDYIGVPGTYFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDV 255 (852)
Q Consensus 176 ~~~g~I~l~l~f~p~~~~~~~~~gv~~~~~~~g~~~~~~p~~~g~~v~l~~dg~~~~~~~~~i~~~~g~~y~~~~~~~~l 255 (852)
+.+++|+++++|+|+.+++.|.+||+++|+|.|||.||||+|.||+|+||||||++|+++|.|.++||+.|.|++||++|
T Consensus 165 k~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwedi 244 (868)
T PLN03008 165 KAETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDI 244 (868)
T ss_pred CCCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccceEEEEEEecCceeEEEeCCC----CchHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccccCCCcHH
Q 003057 256 YDAINQARRLIYITGWSVYHTVRLVRDGS----NTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEE 331 (852)
Q Consensus 256 ~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~----~~~~l~~lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~ 331 (852)
++||++||++|||++||++|+++|+|++. ...+|+++|++||+|||+|+|||||+.+|...++++..|+|.+++++
T Consensus 245 ~~AI~~Ak~~IyI~gWsl~~ei~L~R~~~~~~~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~thdee 324 (868)
T PLN03008 245 CYAISEAHHMIYIVGWSIFHKIKLVRETKVPRDKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTHDEE 324 (868)
T ss_pred HHHHHhhhheEEEeceeecceeEEecCCCCCCCCCccHHHHHHHHHHCCCEEEEEEecccccccccccccccccccccHH
Confidence 99999999999999999999999999863 46899999999999999999999999999877778899999999999
Q ss_pred HHhhhcCCCeEEEeccCCCCCCCcccccc-----------cccccccCcccEEEEecCCCCCcccEEEEEcccccCCCcc
Q 003057 332 TRRFFKHSSVQVLLCPRSAGKGHSFVKKQ-----------EVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRY 400 (852)
Q Consensus 332 ~~~~~~~~~v~v~~~p~~~~~~~~~~~~~-----------~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~r~ 400 (852)
++++|+|++|.|.++|+.++...+++++. .++++|+||||+||||++.++++|+++|||||+|||+|||
T Consensus 325 t~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~~~r~~vAFvGGiDLc~gRw 404 (868)
T PLN03008 325 TRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVGNNRKVTAFIGGLDLCDGRY 404 (868)
T ss_pred HHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCCCccceEEEEcceeccCCcc
Confidence 99999999999999999877777777652 4567899999999999987777899999999999999999
Q ss_pred CCCCCCCCcccccccCCCCCCCCcCCCCCCCCCCCeeeccceeeChHHHHHHHHHHHHHhhhcCCCC----ccccCCCCc
Q 003057 401 DTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTNFEERWLKASKPHG----LQKLKSSND 476 (852)
Q Consensus 401 Dt~~H~~~~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~~----~~~l~~~~~ 476 (852)
||++|++++++++.+.+||+||.+.+ ..+.|++||||+|++|+||||++|+.+|.+||++++++.. .+.....++
T Consensus 405 DT~~H~l~~~l~t~~~~D~~np~~~~-~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~~~~~~ 483 (868)
T PLN03008 405 DTPEHRILHDLDTVFKDDFHNPTFPA-GTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGKTHWQD 483 (868)
T ss_pred CCcCCCccccccccccccccCccccC-CCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCcccccccccccccccc
Confidence 99999999999999999999998754 3457899999999999999999999999999999988532 111122345
Q ss_pred hhhhhhccCcccccCcc-------------cC---CCCCCCCCcccceeeeccCCccccCCCCCcccccccccccCcccc
Q 003057 477 DSLLKLERIPEIVGMTE-------------AS---YLSENDPEAWHAQVFRSIDSNSVKGFPVEPRDATSMNLVCGKNVL 540 (852)
Q Consensus 477 ~~l~~~~~~p~~~~~~~-------------~~---~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~~g~~~~ 540 (852)
+.|+++++++.++.+.. .+ ...++++++|.+|+|||++.+++++||..+.++..++++|||+..
T Consensus 484 d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~gk~~~ 563 (868)
T PLN03008 484 DALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLECAKRLV 563 (868)
T ss_pred chhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhccccccccc
Confidence 66777777765543310 01 011256788999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhccceEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCCCCCCCCC
Q 003057 541 IDMSIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMWPEGITTS 620 (852)
Q Consensus 541 ~e~sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~peg~~~~ 620 (852)
+|+||+.||++||++||||||||||||+++++.|+++.+.++.|+||++|+++|+++++++++|+|+||+|+||||.|.+
T Consensus 564 ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP~~peG~~~s 643 (868)
T PLN03008 564 VDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDPKS 643 (868)
T ss_pred hhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEECCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchHHHhhccCeeeE
Q 003057 621 PQIQRILYWQHKTMQMMYETIYKALVESGLQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQALAKKNRRFQI 700 (852)
Q Consensus 621 ~~~~~i~~~~~~t~~~~~~~~~~~L~~~Gv~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 700 (852)
++.|.|++||++||+|||.+++++|++.|.+. +|.+|++|||||||+.... ..++..++.+..++++|+++|
T Consensus 644 g~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~--~p~dyl~fy~L~~~e~~~~------~~~~~~~~~~~~a~~~rr~~I 715 (868)
T PLN03008 644 GPVQEILYWQSQTMQMMYDVIAKELKAVQSDA--HPLDYLNFYCLGKREQLPD------DMPATNGSVVSDSYNFQRFMI 715 (868)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--CccCEEEEecccccccccC------CCCCCCCchhhhhhhccceeE
Confidence 99999999999999999999999999988654 5889999999999987542 134455667777899999999
Q ss_pred EEEeeEEEEeceEEEEeccCCCCCCcCCCCCCceEEEeecCcccccccCCCCCchHHHHHHHHHHHHhCCCccccCCCCc
Q 003057 701 YIHSKGMIVDDEYVIIGSANINQRSLEGTRDTEIAMGAYQPRHTWASKLSNPYGQVYGYRMSLWAEHIGAIEECFNRPES 780 (852)
Q Consensus 701 yvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~~~~~~~~~~~~~~~lR~~Lw~eHlg~~~~~~~~p~~ 780 (852)
|||||+|||||++++|||||||+|||.|+||+|+++.++++.++|+.+.+.++|+||+||++||+||||+.++.|.+|++
T Consensus 716 YvHsK~~ivDd~~~~iGSaN~n~RS~~~~Rd~E~~~~~~~~~~~~~~~~~~~rg~I~g~R~sLwaEHLG~~~~~~~~p~s 795 (868)
T PLN03008 716 YVHAKGMIVDDEYVLMGSANINQRSMAGTKDTEIAMGAYQPNHTWAHKGRHPRGQVYGYRMSLWAEHLGKTGDEFVEPSD 795 (868)
T ss_pred EEeeeEEEECCCEEEEeccccCHhhccCCCCceEeEEeccccccccccCcchhhHHHHHHHHHHHHHhCCCHHHccCCCC
Confidence 99999999999999999999999999999999999999999999877777899999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhHHHhhhhhcccccccccCccccCCCCCccCCCCCCcCCCCCCccccccc-ccCcCCCC
Q 003057 781 LGCVRRVRSLSEQNWKQYAADEVTQLKGHLLKYPVDVDPTGKVNALPGCAQFPDVGGNILGSFI-AIQENLTI 852 (852)
Q Consensus 781 ~~~~~~~~~~~~~n~~~~~~~~~~~~~g~l~~~p~~~~~~~~~~~~~g~~~f~~~~~~~~g~~~-~~~~~~~~ 852 (852)
++|+++||++|++||++|+++++.+|+|||++||+.|+.||+|++|||+|+||||+|+|+|+++ +||++|||
T Consensus 796 ~ecv~~vn~~a~~~w~~y~~~~~~~~~ghl~~yp~~v~~~g~v~~l~g~~~fpd~~~~v~g~~~~~lp~~ltt 868 (868)
T PLN03008 796 LECLKKVNTISEENWKRFIDPKFSELQGHLIKYPLQVDVDGKVSPLPDYETFPDVGGKIIGAHSMALPDTLTT 868 (868)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCCcccccCceEecCCCcEeeCCCCCcCCCCCCceeccccccCCccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999996 89999997
No 2
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=3e-177 Score=1519.09 Aligned_cols=788 Identities=44% Similarity=0.837 Sum_probs=704.2
Q ss_pred eeeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecC-CCCCee
Q 003057 37 LLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISN-SESPVW 115 (852)
Q Consensus 37 ~~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~-t~nP~W 115 (852)
+||||+|+|||+||++|+|++. ++..++++.++ +..++ ..++++||||+|+|+++++|||+|+.| +.||+|
T Consensus 4 ~llhg~l~~~i~ea~~l~~~~~-~~~~~~~~~~~----~~~~~---~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w 75 (808)
T PLN02270 4 ILLHGTLHATIYEVDKLHSGGG-PGFLGKLVANV----EETVG---VGKGESQLYATIDLEKARVGRTRKIENEPKNPRW 75 (808)
T ss_pred eeeecceEEEEEEcccCCCcch-hhHHHHHHhcc----chhcc---CCCCCCCceEEEEeCCcEEEEEeecCCCCCCCcc
Confidence 5899999999999999999764 33333333222 22222 125789999999999999999999998 579999
Q ss_pred eeEEEEeecCCCcEEEEEEEecCCcCCceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEeeccccccc
Q 003057 116 MQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTPVENMSL 195 (852)
Q Consensus 116 nE~F~~~v~~~~~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~p~~~~~~ 195 (852)
||+|+++|+|.++.|+|+|||.|.+|+.+||++.||+++|.+|..+++||+|++.+|||++++.+||++++|+|+..++.
T Consensus 76 ~e~f~i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~~ 155 (808)
T PLN02270 76 YESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDRN 155 (808)
T ss_pred ccceEEeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCcCCCCCCCCccccCceeEEeecccccCCCccceeccCCcccCchhHHHHHHHHHHhccceEEEEEEecCc
Q 003057 196 YYRGVGSGPDYIGVPGTYFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYH 275 (852)
Q Consensus 196 ~~~gv~~~~~~~g~~~~~~p~~~g~~v~l~~dg~~~~~~~~~i~~~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p 275 (852)
|.+||++ ++|.|||.||||+|.||+|+||||+|++|+++|.|.+++|+.|.+..||+++++||.+||++|||++|+|+|
T Consensus 156 ~~~gv~~-~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~AI~~Ar~~IyI~GW~~d~ 234 (808)
T PLN02270 156 WGRGIRS-AKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHLIYITGWSVYT 234 (808)
T ss_pred hhcccCC-cCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHHHHhhhcEEEEEEeecCC
Confidence 9999965 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeCCC-----CchHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccccCCCcHHHHhhhcCCCeEEEeccCCC
Q 003057 276 TVRLVRDGS-----NTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPRSA 350 (852)
Q Consensus 276 ~~~l~r~~~-----~~~~l~~lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~p~~~ 350 (852)
+|+|+|++. ...+|+++|++||++||+|+||+||+.++... ++.+|+|.|++++++++|++.+|+|+++|+.+
T Consensus 235 ~i~LvRd~~~p~~~~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~--~k~~g~m~thd~~t~~~f~~~~V~~~L~~r~P 312 (808)
T PLN02270 235 EISLVRDSRRPKPGGDVTIGELLKKKASEGVRVLLLVWDDRTSVDL--LKKDGLMATHDEETENFFRGTDVHCILCPRNP 312 (808)
T ss_pred CceEecCCCCCCCCCcchHHHHHHHHhcCCCEEEEEEEcCcccchh--hccccccccCHHHHHHHhccCCceEEEcCCCc
Confidence 999999753 23799999999999999999999999887644 35678999999999999999999999999887
Q ss_pred CCCCcccccccccccccCcccEEEEecCCCC---CcccEEEEEcccccCCCccCCCCCCCCcccccccCCCCCCCCcCCC
Q 003057 351 GKGHSFVKKQEVGTIYTHHQKTVVVDADAGQ---FKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEP 427 (852)
Q Consensus 351 ~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~---~~~~~vafvGG~nl~~~r~Dt~~H~~~~~~~~~~~~dy~n~~~~~~ 427 (852)
+...+|+.+..+++.++||||+||||++.++ ++|+.+|||||+|||++||||++|++|+++++.|++||+||.|.+.
T Consensus 313 ~~~~~~~~~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~~Ldt~h~~Df~~p~~~~~ 392 (808)
T PLN02270 313 DDGGSIVQDLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTGA 392 (808)
T ss_pred ccccceeeccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCccccccccccccccccccCcccccc
Confidence 6666666666677889999999999997543 4799999999999999999999999999999999999999998763
Q ss_pred --CCCCCCCCeeeccceeeChHHHHHHHHHHHHHhhhcCCCCccccCCCCchhhhhhccCcccccCcccCCCCCCCCCcc
Q 003057 428 --IAGGPREPWHDLHCRIDGPAAYDILTNFEERWLKASKPHGLQKLKSSNDDSLLKLERIPEIVGMTEASYLSENDPEAW 505 (852)
Q Consensus 428 --~~~~~~~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~~~~~l~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~ 505 (852)
..++||+||||+|++|+||+|++|+.+|.+||+.++++..+ ..+.+++.+..+.. +...+.+.++|
T Consensus 393 ~~~~g~Pr~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~ll-----------~~~~~~~~~~~P~~-~~~~p~d~~~w 460 (808)
T PLN02270 393 SITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKDIL-----------VQLRELEDVIIPPS-PVMFPDDHEVW 460 (808)
T ss_pred cccCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHhhcCccch-----------hhhcccccccCCCC-cccCCCcCCcc
Confidence 46789999999999999999999999999999998875321 11111111111111 11123456789
Q ss_pred cceeeeccCCccccCCCCCcccccccccccCcccchhhHHHHHHHHHHHhccceEEEeeccccccCCCcccc----cccC
Q 003057 506 HAQVFRSIDSNSVKGFPVEPRDATSMNLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSH----RDLG 581 (852)
Q Consensus 506 ~vQv~rs~~~~~~~~~p~~p~~~~~~~~~~g~~~~~e~sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~----~~~~ 581 (852)
.||+|||++.+++++||..|.++..+++++|++...+++|+.+|++||++||||||||||||+++++.|..+ ++.|
T Consensus 461 ~VQvfRSid~g~a~~~P~~~~~~~~~~lv~g~~~~~~rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~ 540 (808)
T PLN02270 461 NVQLFRSIDGGAAFGFPETPEAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDIN 540 (808)
T ss_pred ccceeecccchhhccCCCCcchhhhcceeccCCCchhhHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhccccccccccc
Confidence 999999999999999999999988889999998888999999999999999999999999999999999765 7889
Q ss_pred CCCccHHHHHHHHHHHHHcCCCceEEEEecCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCcee
Q 003057 582 ANNLIPMEIALKIANKIRANERFAAYILIPMWPEGITTSPQIQRILYWQHKTMQMMYETIYKALVESGLQNKYVPQDYLN 661 (852)
Q Consensus 582 ~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~peg~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~Gv~~~~~p~~y~~ 661 (852)
+.|+||++|+++|+++|+++++|+||||+|+||||.+++.++|.|++||++||+||+.+++++|+++|+.. +|++||+
T Consensus 541 ~~nlIp~el~~kI~~ri~~~e~f~VyIViP~~peG~~e~~~vq~il~wq~~TM~~~~~~I~~~Lk~~g~~~--dp~dyL~ 618 (808)
T PLN02270 541 ALHLIPKELSLKIVSKIEAGEKFTVYVVVPMWPEGIPESGSVQAILDWQRRTMEMMYKDVIQALRAKGLEE--DPRNYLT 618 (808)
T ss_pred ccccchHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCccC--CccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999753 6899999
Q ss_pred eeccCCccccCCCCCCCCCCCCCCCchHHHhhccCeeeEEEEeeEEEEeceEEEEeccCCCCCCcCCCCCCceEEEeecC
Q 003057 662 FFCLGNREALDGVDSSNAKDSTAANTPQALAKKNRRFQIYIHSKGMIVDDEYVIIGSANINQRSLEGTRDTEIAMGAYQP 741 (852)
Q Consensus 662 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~ 741 (852)
||||+|||......+. +...+.+++++..+|+.++++||||||+|||||+|++|||||||+|||.|++||||+|..++|
T Consensus 619 ff~L~nre~~~~g~~~-P~~~~~~~~~~~~aq~~rr~~I~vH~K~~ivDd~~~~iGSaN~n~rS~~G~rDSEIam~a~qp 697 (808)
T PLN02270 619 FFCLGNREVKKSGEYE-PSEKPEPDTDYIRAQEARRFMIYVHTKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGGYQP 697 (808)
T ss_pred EEeccccccccCcccC-CccCCcccchhhhhhhccceeEEEeeeEEEEcCCEEEEeccccccccccCCccchhhhcccCc
Confidence 9999999975432221 112344566778889999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCchHHHHHHHHHHHHhCCCccccCCCCcchhhHHHHHHHHHhhHHHhhhhh-cccccccccCccccCCC
Q 003057 742 RHTWASKLSNPYGQVYGYRMSLWAEHIGAIEECFNRPESLGCVRRVRSLSEQNWKQYAADEV-TQLKGHLLKYPVDVDPT 820 (852)
Q Consensus 742 ~~~~~~~~~~~~~~~~~lR~~Lw~eHlg~~~~~~~~p~~~~~~~~~~~~~~~n~~~~~~~~~-~~~~g~l~~~p~~~~~~ 820 (852)
.++... ..++++|++||++||+||||+.++.|.+|+|++|+++||++|++||++|+++++ .+|+|||++||+.|+.|
T Consensus 698 ~~~~~~--~~~r~~i~~~R~~Lw~EHLG~~~~~f~~p~s~~cv~~v~~~a~~~w~~y~~~~~~~~~~ghl~~yp~~v~~~ 775 (808)
T PLN02270 698 YHLSTR--QPARGQIHGFRMSLWYEHLGMLDETFLDPESEECIQKVNQIADKYWDLYSSETLEHDLPGHLLRYPIGVASE 775 (808)
T ss_pred cccccc--cchHHHHHHHHHHHHHHHhCCChhHhhCCCcHHHHHHHHHHHHHHHHHhcccccCCCCCcccccCceEecCC
Confidence 876543 367899999999999999999999999999999999999999999999999999 58999999999999999
Q ss_pred CCccCCCCCCcCCCCCCccccccc-ccCcCCCC
Q 003057 821 GKVNALPGCAQFPDVGGNILGSFI-AIQENLTI 852 (852)
Q Consensus 821 ~~~~~~~g~~~f~~~~~~~~g~~~-~~~~~~~~ 852 (852)
|+|++|||+|+||||+|+|+|+++ +||++|||
T Consensus 776 g~v~~l~g~~~fpd~~~~v~g~~~~~~p~~ltt 808 (808)
T PLN02270 776 GDITELPGTEFFPDTKARVLGAKSDYLPPILTT 808 (808)
T ss_pred CcEeeCCCCCcCCCCCCceeccccccCCccccC
Confidence 999999999999999999999996 99999997
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=1.1e-168 Score=1447.09 Aligned_cols=736 Identities=43% Similarity=0.743 Sum_probs=647.6
Q ss_pred eeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeee
Q 003057 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQ 117 (852)
Q Consensus 38 ~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE 117 (852)
||||+|++||+||+.+. ++|... ..++ .+ .||||+|+|+++++||| .|+.||+|||
T Consensus 7 ~lhg~l~~~i~~~~~~~----------~~~~~~-----~~~~-----~~-~~~y~tv~~~~~~v~rt---~~~~~p~w~e 62 (758)
T PLN02352 7 FFHGTLEATIFDATPYT----------PPFPFN-----CIFL-----NG-KATYVTIKIGNKKVAKT---SHEYDRVWNQ 62 (758)
T ss_pred ccccceEEEEEEeeehh----------hccccc-----cccc-----CC-CCceEEEEeCCcEEecC---CCCCCCcccc
Confidence 79999999999999321 121100 0111 12 39999999999999999 6777999999
Q ss_pred EEEEeecCCC-cEEEEEEEecCCcCCceeeeEEEeeeeecCCCe-eeeeeecccCCCCCCCCCceeeeeEEeeccccccc
Q 003057 118 HFNVPVAHSA-AEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDK-IEGAFPILNSSRKPCKAGAVLSLSIQYTPVENMSL 195 (852)
Q Consensus 118 ~F~~~v~~~~-~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~g~~-~~~w~~L~~~~~~~~~~~g~I~l~l~f~p~~~~~~ 195 (852)
+|+++|+|.+ +.|+|+||| +..+||++.||+++|.+|.. +++||+|++.+|||+++ .+|+++++|+|+++++.
T Consensus 63 ~f~i~~ah~~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~ 137 (758)
T PLN02352 63 TFQILCAHPLDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPAELEPT 137 (758)
T ss_pred ceeEEeeeecCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEhhhCcc
Confidence 9999999999 799999999 58999999999999999976 99999999999999866 89999999999999999
Q ss_pred cccccCCCCCcCCCCCCCCccccCceeEEeecccccCCCccceeccCCcccCchhHHHHHHHHHHhccceEEEEEEecCc
Q 003057 196 YYRGVGSGPDYIGVPGTYFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYH 275 (852)
Q Consensus 196 ~~~gv~~~~~~~g~~~~~~p~~~g~~v~l~~dg~~~~~~~~~i~~~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p 275 (852)
|.+||.+ ++|.|||.||||+|.||+|+||||||++++++|.|.+ .|.+.++|++|++||++||++|||++|+|++
T Consensus 138 ~~~g~~~-~~~~gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~~~~~~~f~al~eAI~~Ar~sI~I~gW~~d~ 212 (758)
T PLN02352 138 WCKILEN-GSFQGLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----CGSPRKLWEDVYKAIEGAKHLIYIAGWSFNP 212 (758)
T ss_pred hhhcccC-CCcCCcCCcccccCCCCEEEEEecCCCccccCCccee----ecCHHHHHHHHHHHHHhhccEEEEEEEEecC
Confidence 9999976 6999999999999999999999999999999999988 6888899999999999999999999999999
Q ss_pred eeEEEeCC------CCchHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccccCCCcHHHHhhhcCCCeEEEeccCC
Q 003057 276 TVRLVRDG------SNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPRS 349 (852)
Q Consensus 276 ~~~l~r~~------~~~~~l~~lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~p~~ 349 (852)
+++|+|++ ..+.+|+++|++||++||+|+||+||+.++... ++..|+|.++++++.++|++.+|+|+++|+.
T Consensus 213 ~i~L~R~~~~~~p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~--~~~~g~m~th~~~~~~~f~h~~V~~~l~pr~ 290 (758)
T PLN02352 213 KMVLVRDPETDIPHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPI--IKNKGVMGTHDEDAFAYFKHTKVVCKLCPRL 290 (758)
T ss_pred CceeccCcccccccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccc--cccccccccchHHHHhhccCCceEEeecccc
Confidence 99999976 356899999999999999999999999887644 4566889999999999999999999999875
Q ss_pred CCCCCcccccccccccccCcccEEEEecCCCC--CcccEEEEEcccccCCCccCCCCCCCCcccccc-cCCCCCCCCcCC
Q 003057 350 AGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQ--FKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETV-HKDDYYNPSLLE 426 (852)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~--~~~~~vafvGG~nl~~~r~Dt~~H~~~~~~~~~-~~~dy~n~~~~~ 426 (852)
.. ..++.++||||+||||++.++ ++|+++|||||+|||+|||||++|++++++++. +++||+|+.|.+
T Consensus 291 ~~---------~~~~~~SHHQK~VVID~~~~~~~~~r~~vAFVGGIDLc~GRwDT~~H~l~d~l~t~~~~~Df~~~~~~g 361 (758)
T PLN02352 291 HK---------KFPTLFAHHQKTITVDTRANDSISEREIMSFVGGLDLCDGRYDTEEHSLFRTLNTESHCQDFYQTSIAG 361 (758)
T ss_pred cc---------ccccccccccceEEEccCCCCCccccceEEEEcceeccCCccCCccCCccccccccccccccccccccc
Confidence 32 235679999999999997544 468889999999999999999999999999875 679999999876
Q ss_pred C--CCCCCCCCeeeccceeeChHHHHHHHHHHHHHhhhcCCCCccccCCCCchhhhhhccCcccccCcccCCCCCCCCCc
Q 003057 427 P--IAGGPREPWHDLHCRIDGPAAYDILTNFEERWLKASKPHGLQKLKSSNDDSLLKLERIPEIVGMTEASYLSENDPEA 504 (852)
Q Consensus 427 ~--~~~~~~~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~~~~~l~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 504 (852)
. ..++||+||||+||+|+||||+||.+||+||||++++...+ ++...++.+..++.. +..+.++
T Consensus 362 ~~~~~g~PR~PWHDvh~~V~GpAA~Dv~~~F~qRW~~~~~~~~l-----------~p~~~~~~~~~~p~~---~~~~~~~ 427 (758)
T PLN02352 362 AKLQKGGPREPWHDAHACIVGEAAWDVLTNFEQRWTKQCNPSVL-----------VPTSSIRNLVHQPGS---SESNNRN 427 (758)
T ss_pred ccCCCCCCCCCcEeEEEEEECHHHHHHHHHHHHHHhhccCcccc-----------CCcccccccccCCCC---CcccCCc
Confidence 3 46789999999999999999999999999999998865311 111111211111111 1134578
Q ss_pred ccceeeeccCCccccCCCCCcccccccccccCcccchhhHHHHHHHHHHHhccceEEEeeccccccCCCcccccccCCCC
Q 003057 505 WHAQVFRSIDSNSVKGFPVEPRDATSMNLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANN 584 (852)
Q Consensus 505 ~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~~g~~~~~e~sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n 584 (852)
|.||++||++.|++.+||.. ...|+||++||++||++||||||||||||+++++.|+.+++.++.|
T Consensus 428 w~VQv~RSid~~sa~~~P~~--------------~~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N 493 (758)
T PLN02352 428 WKVQVYRSIDHVSASHMPRN--------------LPVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTN 493 (758)
T ss_pred ccceEEEecCccccccCCCC--------------CchhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhc
Confidence 99999999999999888752 2358899999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHcCCCceEEEEecCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCceeeec
Q 003057 585 LIPMEIALKIANKIRANERFAAYILIPMWPEGITTSPQIQRILYWQHKTMQMMYETIYKALVESGLQNKYVPQDYLNFFC 664 (852)
Q Consensus 585 ~i~~~ia~~ia~~~~~~~gv~V~IvlP~~peg~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~Gv~~~~~p~~y~~~~~ 664 (852)
+||++|+++|+++++++++|+|+||+|+||+|.+++.+.|.||+||++||+|+|.++.++|+++|.+. +|++||+|||
T Consensus 494 ~I~~eIa~kI~~kir~~e~f~V~IViP~~PeG~~e~~~vq~il~wq~~TM~~~y~~I~~~L~~~g~~~--~P~dYl~F~c 571 (758)
T PLN02352 494 LIPIEIALKIASKIRAKERFAVYILIPMWPEGVPESEPVQDILHWTRETMAMMYKLIGEAIQESGEPG--HPRDYLNFFC 571 (758)
T ss_pred chHHHHHHHHHHHHhCCCCCEEEEEECCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCccC--ChhHheeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999998654 6999999999
Q ss_pred cCCccccCCCCCCCCCCCCCCCchHHHhhccCeeeEEEEeeEEEEeceEEEEeccCCCCCCcCCCCCCceEEEeecCccc
Q 003057 665 LGNREALDGVDSSNAKDSTAANTPQALAKKNRRFQIYIHSKGMIVDDEYVIIGSANINQRSLEGTRDTEIAMGAYQPRHT 744 (852)
Q Consensus 665 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 744 (852)
||||+......... ...+..++.+..+++.++++||||||+|||||++++|||||||+|||.|++||||+|++++++++
T Consensus 572 L~n~e~~~~g~~~~-~~~p~~~~~~~~~~~~rr~~IYVHSKlMIVDD~~viIGSANIN~RSM~G~rDSEia~~~~~~~~~ 650 (758)
T PLN02352 572 LANREEKRKGEFVP-PYSPHQKTQYWNAQKNRRFMVYVHSKLMIVDDTYILIGSANVNQRSMDGCRDTEIAIGCYQSKNG 650 (758)
T ss_pred ccccccccCCcccc-ccCCCCCchhhhcccccceeEEEeeeEEEEcCcEEEEcccccccccccCcccchhhhcccccccC
Confidence 99999765433221 12233445566778888899999999999999999999999999999999999999999999865
Q ss_pred ccccCCCCCchHHHHHHHHHHHHhCCCccccCCCCcchhhHHHHHHHHHhhHHHhhhhhccccc-ccccCccccCCCCCc
Q 003057 745 WASKLSNPYGQVYGYRMSLWAEHIGAIEECFNRPESLGCVRRVRSLSEQNWKQYAADEVTQLKG-HLLKYPVDVDPTGKV 823 (852)
Q Consensus 745 ~~~~~~~~~~~~~~lR~~Lw~eHlg~~~~~~~~p~~~~~~~~~~~~~~~n~~~~~~~~~~~~~g-~l~~~p~~~~~~~~~ 823 (852)
.. ....+++++||++||+||||+.++.|.+|+|+||+++||++|++||++|+++++.+|+| ||++||+.|+.||+|
T Consensus 651 ~~---~~~~~~i~~~R~~L~~EHLG~~~~~f~~p~s~ec~~~v~~~~~~~w~~y~~~~~~~~~g~hl~~yp~~v~~~g~v 727 (758)
T PLN02352 651 TN---TNNPRDIQAYRMSLWYEHTGLDEESFLEPESLECVRRLRTIGEQMWEIYSGEEVVDMEGVHLVNYPISVTKDGAV 727 (758)
T ss_pred CC---cccchHHHHHHHHHHHHHhCCCHHHhcCCCCHHHHHHHHHHHHHHHHhhccchhccCCCcccccCCeEecCCcce
Confidence 32 23568999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCC-CCCCcCCCCCCccccccc-ccCcCCCC
Q 003057 824 NAL-PGCAQFPDVGGNILGSFI-AIQENLTI 852 (852)
Q Consensus 824 ~~~-~g~~~f~~~~~~~~g~~~-~~~~~~~~ 852 (852)
++| ||+|+||||+|+|+|+++ +|||+|||
T Consensus 728 ~~l~~g~~~fpd~~~~v~g~~~~~~p~~lt~ 758 (758)
T PLN02352 728 EDLADGDGNFPDTKTPVKGRRSKMLPPVFTT 758 (758)
T ss_pred eecCCCCcCCCCCCCceeccccccCCccccC
Confidence 999 699999999999999996 99999997
No 4
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=5.1e-149 Score=1274.39 Aligned_cols=785 Identities=49% Similarity=0.783 Sum_probs=686.7
Q ss_pred cccccccccCCCCC----CCCccccCCccCCCCceeeeeceEEEEEEEEeeCCCCCCccccccccccccccc----cc--
Q 003057 5 PAYAETMSFGGSNH----GQGQEAVPFETHQGSLKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNV----KV-- 74 (852)
Q Consensus 5 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~----~~-- 74 (852)
|-+.++|++.+-+. .+.-...+..+..++..+.|+||+|+++|+++..+.+++.+..+.+..+.++.. ..
T Consensus 36 ~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 115 (887)
T KOG1329|consen 36 PRRLEFLPGVPVFAAVVGVERPTSHPFVPSSGSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNIND 115 (887)
T ss_pred eeccccccCCcccccccceecccccccccCCcceeeeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccc
Confidence 77777777654432 111112345555677888999999999999999999998766554444432210 00
Q ss_pred -----cc-ccc---ccCCCCCCCCcEEEEEECCEEEeeeeeecCC-CCCeeeeEEEEeecCCCcEEEEEEEecCCcC-Cc
Q 003057 75 -----TS-KIE---SHLSDKITSDPYVTVSICGAVIGRTFVISNS-ESPVWMQHFNVPVAHSAAEVHFVVKDNDFVG-SQ 143 (852)
Q Consensus 75 -----~~-~~~---~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t-~nP~WnE~F~~~v~~~~~~l~~~V~D~d~~~-~~ 143 (852)
.+ ... +.++|..++++|+++.|...++++|+++.+. .+|.|++.|.+.++|....+.|+|++.+..| ..
T Consensus 116 ~~~~~p~~~~~~~~~~~~~~~~~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~ 195 (887)
T KOG1329|consen 116 NHDEKPSGPRSSLNSSMEKRKTLENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSK 195 (887)
T ss_pred cccccCCCccCCcccchhhhhhccchheeeechhhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcccccee
Confidence 00 000 1123456689999999999999999999886 8999999999999999999999999999999 99
Q ss_pred eeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEeeccccccccccccCCCCCcCCCCCCCCccccCceeE
Q 003057 144 IMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTPVENMSLYYRGVGSGPDYIGVPGTYFPLRRGGKVT 223 (852)
Q Consensus 144 ~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~p~~~~~~~~~gv~~~~~~~g~~~~~~p~~~g~~v~ 223 (852)
++|.+++|...+.+|..++.|+++++.++++.+++..+++++.|++.+....|..++.++++|.+++.++||++.||.|+
T Consensus 196 ~w~~v~~s~~~~~~~~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~ 275 (887)
T KOG1329|consen 196 RWGRVKISFLQYCSGHRIGGWFPILDNDGKPHQKGSNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVT 275 (887)
T ss_pred EEEEeccchhhhhccccccceeeeeccCCccccCCcccceEEeeEeechhhhhhheeccccccCCccceeeehhccCcee
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred EeecccccCCCccceeccCCc-ccCchhHHHHHHHHHHhccceEEEEEEecCceeEEEeCCC--CchHHHHHHHHhhhcC
Q 003057 224 LYQDAHAHDGCLADLKLDGGV-QFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGS--NTLMLGDLLKIKSQEG 300 (852)
Q Consensus 224 l~~dg~~~~~~~~~i~~~~g~-~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~--~~~~l~~lL~~~a~rG 300 (852)
+|+|+|..+++.|.+.+++|+ .|.+..||+++++||++||+.|||++||++|++||+|+.. ...+|+++|++||++|
T Consensus 276 ~~qd~Hr~~sf~P~r~~~~~kw~vd~~~~~edi~dAI~~Ar~~IyItgWwl~pel~L~Rp~~~~~~~rLdelLK~KAeeG 355 (887)
T KOG1329|consen 276 LYQDAHRFDSFAPVRTLDGGKWFVDGKKYWEDVADAIENARREIYITGWWLSPELYLVRPPKGPNDWRLDELLKRKAEEG 355 (887)
T ss_pred eeecccccCCcCCcccCCCceEEEchhhHHHHHHHHHHhhhhEEEEeccccCceEEEEccCCCCCceEHHHHHHHHHhCC
Confidence 999999999999999999999 6666789999999999999999999999999999999854 3699999999999999
Q ss_pred CeEEEEEeCCCccccccccccccccCCCcHHHHhhhcCCCeEEEeccCCCCCCCcccccccccccccCcccEEEEecCCC
Q 003057 301 VRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAG 380 (852)
Q Consensus 301 V~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~ 380 (852)
|+|+|||||++++... .++++++++.+++|++|+|+++|+..+... .++|+||||+||||++
T Consensus 356 VrV~ilv~kdv~s~~~--------i~S~~~k~~l~~lH~nV~vlr~P~~~~~~~--------~~~wtHHeK~VVVD~~-- 417 (887)
T KOG1329|consen 356 VRVLILVWKDVTSALG--------INSHYEKTRLFFLHPNVKVLRCPRHPGSGP--------TTLWTHHEKLVVVDQE-- 417 (887)
T ss_pred cEEEEEEeccchhccc--------cCchhHHHHHhhcCCCeEEEECCCCcCCCC--------ceEEecceEEEEEcce--
Confidence 9999999999987643 236788899999999999999998765331 2579999999999996
Q ss_pred CCcccEEEEEcccccCCCccCCCCCCCCcccccccCCCCCCCCcCC----CCCCCCCCCeeeccceeeChHHHHHHHHHH
Q 003057 381 QFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLE----PIAGGPREPWHDLHCRIDGPAAYDILTNFE 456 (852)
Q Consensus 381 ~~~~~~vafvGG~nl~~~r~Dt~~H~~~~~~~~~~~~dy~n~~~~~----~~~~~~~~pWhDv~~~i~Gpaa~dl~~~F~ 456 (852)
+|||||+|||+|||||++|+|+++++++|++||+||+|.+ ...+.|||||||+||+|.||+|+||++||+
T Consensus 418 ------v~fvGGlDLC~GRYDT~eH~L~d~~~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~ 491 (887)
T KOG1329|consen 418 ------VAFVGGLDLCDGRYDTPEHPLFDTLQTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFE 491 (887)
T ss_pred ------eccccceeccccccCCccccccccccccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHH
Confidence 9999999999999999999999999999999999999987 667899999999999999999999999999
Q ss_pred HHHhhhcCCCCccccCCCCchhhhhhccCcccccCcccCCCCCCCCCcccceeeeccCCccccCCCCCcccccccccccC
Q 003057 457 ERWLKASKPHGLQKLKSSNDDSLLKLERIPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSVKGFPVEPRDATSMNLVCG 536 (852)
Q Consensus 457 ~rW~~~~~~~~~~~l~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~~g 536 (852)
||||++...+. .+++.+..+.+++.+..++. ..+.+++.|.+|++||++.+++.+ |+...+.++.|+
T Consensus 492 QRWn~~~~~K~------~~~~~~p~L~p~~~~~~~~~---~~~~~~e~~~~q~f~si~~gs~~~----~qvlrs~g~wS~ 558 (887)
T KOG1329|consen 492 QRWNKQKREKK------PYDDSLPLLLPISDITGPSE---PNEEDPESWHVQVFRSIDGGSVAG----PQVLRSAGLWSG 558 (887)
T ss_pred HHHHHHhcccC------CCCccceeecChhhhcCCCC---ccccccccccccceeeccCCcccc----hHHhhhhccccc
Confidence 99999875421 01222222222233322221 135678889999999999877654 566667788899
Q ss_pred cccchhhHHHHHHHHHHHhccceEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCCC--
Q 003057 537 KNVLIDMSIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMWP-- 614 (852)
Q Consensus 537 ~~~~~e~sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~p-- 614 (852)
+...+|.||++||+++|++||||||||||||+++++.|.. ..|.+.++|+++|++|+++++.|+||||||+||
T Consensus 559 g~~~~e~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~~~~-----~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~Pgf 633 (887)
T KOG1329|consen 559 GINEIEDSIQNAYVKAIRNAEHFIYIENQFFIGSSFNWDS-----VLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGF 633 (887)
T ss_pred CCCchHHHHHHHHHHHHHhccceEEEeeeeEEeeccCCCc-----ccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccc
Confidence 9888999999999999999999999999999999876754 567778999999999999999999999999999
Q ss_pred CC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchHHHh
Q 003057 615 EG--ITTSPQIQRILYWQHKTMQMMYETIYKALVESGLQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQALA 692 (852)
Q Consensus 615 eg--~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~Gv~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (852)
|| .|++++.|+|++||+|||+||+.+++++|++.|++- .+|.+|++|+|+++++.. +
T Consensus 634 EG~~~p~~~svqaIl~wQyrTms~g~~sI~~~Lka~g~d~-~~yi~f~~lr~~g~~e~~--------------------~ 692 (887)
T KOG1329|consen 634 EGDDTPGSGSVQAILHWQYRTMSMGYKSIYKALKAVGLDP-ADYIDFLGLRCLGNREEQ--------------------A 692 (887)
T ss_pred cCCCCCCcchHHHHHHHHHHHHhhhHHHHHHHHHHhcCCc-cccceeeeeeeeeccccc--------------------c
Confidence 88 789999999999999999999999999999999986 467889999999988641 2
Q ss_pred hccCeeeEEEEeeEEEEeceEEEEeccCCCCCCcCCCCCCceEEEeecCcccccccCCCCCchHHHHHHHHHHHHhCCCc
Q 003057 693 KKNRRFQIYIHSKGMIVDDEYVIIGSANINQRSLEGTRDTEIAMGAYQPRHTWASKLSNPYGQVYGYRMSLWAEHIGAIE 772 (852)
Q Consensus 693 ~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~~~~~~~~~~~~~~~lR~~Lw~eHlg~~~ 772 (852)
++.+++|||||||+|||||+++||||||||+|||.|+|||||||+++|+.+++..+...++|++++|||+||+||||+++
T Consensus 693 ~~~~~emIYVHsK~mIvDD~~vIIGSANINqRSm~G~RDSEIA~~~~d~~~~~s~m~g~p~~f~~~lR~slw~EHLG~~~ 772 (887)
T KOG1329|consen 693 QRLRREMIYVHSKLMIVDDEYVIIGSANINQRSMLGNRDSEIAMGIYDTNHVWSKMNGRPYGFIYGLRMSLWREHLGLLD 772 (887)
T ss_pred ccceEEEEEEeeeeEEecCCEEEEeecccchhhccCCccceeEEEEecccchhhccCCcchhHHHHHHHHHHHHHhCCCc
Confidence 35678999999999999999999999999999999999999999999999999888889999999999999999999999
Q ss_pred cccCCCCcchhhHHHHHHHHHhhHHHhhhhhcccccccccCccccCCCCCccCCCCCCcCCCCCCcccccc-cccCcCCC
Q 003057 773 ECFNRPESLGCVRRVRSLSEQNWKQYAADEVTQLKGHLLKYPVDVDPTGKVNALPGCAQFPDVGGNILGSF-IAIQENLT 851 (852)
Q Consensus 773 ~~~~~p~~~~~~~~~~~~~~~n~~~~~~~~~~~~~g~l~~~p~~~~~~~~~~~~~g~~~f~~~~~~~~g~~-~~~~~~~~ 851 (852)
+.|+.|++++|.+.|+.+.+++|..|++++...++|||..||+++..+|+++++||.++|||+.++|.|.+ .++|++||
T Consensus 773 d~~~~Pe~~ec~dpv~d~~~~~W~~~a~~n~~~y~~~f~~yP~~~~~~g~~~~~~~~~~~pd~~~~~~~~~~~~~~~~lt 852 (887)
T KOG1329|consen 773 DAFEEPESLECEDPVRDLFEDLWQRYAARNTTIYEGHFRCYPIDVVRTGKVTELPGDETFPDTLGKIIGSKSDALPENLT 852 (887)
T ss_pred ccccCcchhhhhhhHHHHHHHHHHHHHhhhhhhhhceEEEcccccccCcceeecCCccccccccccccccccccCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 59999998
Q ss_pred C
Q 003057 852 I 852 (852)
Q Consensus 852 ~ 852 (852)
+
T Consensus 853 ~ 853 (887)
T KOG1329|consen 853 T 853 (887)
T ss_pred c
Confidence 6
No 5
>PLN02866 phospholipase D
Probab=100.00 E-value=8.1e-95 Score=847.11 Aligned_cols=530 Identities=31% Similarity=0.494 Sum_probs=408.4
Q ss_pred CCCCCccc----cCceeEEeecccccCCCccceeccCCcccCchhHHHHHHHHHHhccceEEEEEEecCceeEEEe--CC
Q 003057 210 PGTYFPLR----RGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVR--DG 283 (852)
Q Consensus 210 ~~~~~p~~----~g~~v~l~~dg~~~~~~~~~i~~~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r--~~ 283 (852)
..+|+|.+ .||.+++|.||. ++|++|++||++||++|||++|||+|++||++ .+
T Consensus 320 F~SFAP~r~~~~~gN~vk~LvDG~--------------------dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~~D 379 (1068)
T PLN02866 320 FGSFAPPRGLTEDGSQAQWFIDGH--------------------AAFEAIASAIENAKSEIFITGWWLCPELYLRRPFHD 379 (1068)
T ss_pred CCCcCCCccccCCCCEEEEEeCHH--------------------HHHHHHHHHHHhcccEEEEEEccCCceEEEEecCCC
Confidence 36899999 699999999997 68999999999999999999999999999999 45
Q ss_pred CCchHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccccCCCcHHHHhhh--cCCCeEEEeccCCCCCCCccccccc
Q 003057 284 SNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFF--KHSSVQVLLCPRSAGKGHSFVKKQE 361 (852)
Q Consensus 284 ~~~~~l~~lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~p~~~~~~~~~~~~~~ 361 (852)
..+.+|+++|++||++||+||||+||..+.....+ +..+.+.+ .++||+|..+|.... .
T Consensus 380 ~~g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~~~----------S~~~k~~L~~lh~gI~V~r~P~~~~---------~ 440 (1068)
T PLN02866 380 HESSRLDSLLEAKAKQGVQIYILLYKEVALALKIN----------SVYSKRRLLGIHENVKVLRYPDHFS---------S 440 (1068)
T ss_pred chHHHHHHHHHHHHHCCCEEEEEEECccccccccC----------chhhHHHHHHhCCCeEEEecCcccc---------c
Confidence 67899999999999999999999999976432111 11122222 378999987764310 1
Q ss_pred ccccccCcccEEEEecCCCCCcccEEEEEcccccCCCccCCCCCCCCcc-cccccCCCCCCCCcCCC------------C
Q 003057 362 VGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKT-LETVHKDDYYNPSLLEP------------I 428 (852)
Q Consensus 362 ~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~~~-~~~~~~~dy~n~~~~~~------------~ 428 (852)
..+++|||||+||||++ +||+||+|||.|||||++|++.|. ...++++||.|++.... +
T Consensus 441 ~~ln~RhHRKIVVIDg~--------IAFvGGiNLc~GRWDT~~H~l~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~ldR 512 (1068)
T PLN02866 441 GVYLWSHHEKLVIVDYQ--------ICFIGGLDLCFGRYDTPEHRVGDCPPVIWPGKDYYNPRESEPNSWEDTMKDELDR 512 (1068)
T ss_pred CcccccCCCCeEEECCC--------EEEecCcccCCCccCCcccccccccccccCccccccccccccccccccccccccc
Confidence 23679999999999996 999999999999999999999884 35688999999865321 2
Q ss_pred CCCCCCCeeeccceeeChHHHHHHHHHHHHHhhhcCCCCccc----c--C------CCC--------------c------
Q 003057 429 AGGPREPWHDLHCRIDGPAAYDILTNFEERWLKASKPHGLQK----L--K------SSN--------------D------ 476 (852)
Q Consensus 429 ~~~~~~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~~~~~----l--~------~~~--------------~------ 476 (852)
...||+||||+||+|+||+|+||+++|++|||.+++...-.+ + . ..+ .
T Consensus 513 ~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~~~~~~~~ll~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 592 (1068)
T PLN02866 513 RKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNEQAIPLLMPHHHMVIPHYLGGSEEEEIESKNQEDNQKGI 592 (1068)
T ss_pred ccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccCccccccccccccccccccccccccccccccccccccccccc
Confidence 356789999999999999999999999999999876431000 0 0 000 0
Q ss_pred ---hhh---hhhccCcccccCcc-------------------------------------cCC-----------------
Q 003057 477 ---DSL---LKLERIPEIVGMTE-------------------------------------ASY----------------- 496 (852)
Q Consensus 477 ---~~l---~~~~~~p~~~~~~~-------------------------------------~~~----------------- 496 (852)
+.. .....+|.+.+.+. .|.
T Consensus 593 ~~~~~~~~~~~~~~~P~llP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 672 (1068)
T PLN02866 593 ARQDSFSSRSSLQDIPLLLPQEADATDGSGGGHKLNGMNSTNGSLSFSFRKSKIEPVLPDTPMKGFVDDLGFLDLSVKMS 672 (1068)
T ss_pred cccccccccccccccccCCCCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 000 00001111111000 000
Q ss_pred -----------------------------CCCCCCCcccceeeeccCCccccCCCCCcccccccccccCcccchhhHHHH
Q 003057 497 -----------------------------LSENDPEAWHAQVFRSIDSNSVKGFPVEPRDATSMNLVCGKNVLIDMSIHT 547 (852)
Q Consensus 497 -----------------------------~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~~g~~~~~e~sI~~ 547 (852)
......+++.+||+||++.||+.. + .+|+||++
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~QivRS~~~WS~G~-~-----------------~~E~SI~~ 734 (1068)
T PLN02866 673 SAERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQVIRSVSQWSAGT-S-----------------QVEESIHA 734 (1068)
T ss_pred ccccccccccccccccccccccccccccccccCCCCeEEEEEEeecccccCCC-C-----------------chHHHHHH
Confidence 000112357889999988877521 1 15889999
Q ss_pred HHHHHHHhccceEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCCCC--C-CC--CChh
Q 003057 548 AYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMWPE--G-IT--TSPQ 622 (852)
Q Consensus 548 ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~pe--g-~~--~~~~ 622 (852)
||+++|++|+||||||||||+++.. .+..+.|+|+.+|+++|++|+++++.|+|+||+|++|+ | .+ .+.+
T Consensus 735 AYi~~I~~A~hfIYIENQFFis~~~-----~~~~i~N~I~~AL~~RI~rA~~~~~~frviIViP~~P~F~G~v~~~~~~s 809 (1068)
T PLN02866 735 AYCSLIEKAEHFIYIENQFFISGLS-----GDDTIQNRVLEALYRRILRAHKEKKCFRVIIVIPLLPGFQGGVDDGGAAS 809 (1068)
T ss_pred HHHHHHHhcccEEEEeccccccccc-----ccccccchHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcCCCCCCccchh
Confidence 9999999999999999999998753 23467899999999999999999999999999999997 3 22 4568
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchHHHhhccCeeeEE
Q 003057 623 IQRILYWQHKTMQMMYETIYKALVES-GLQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQALAKKNRRFQIY 701 (852)
Q Consensus 623 ~~~i~~~~~~t~~~~~~~~~~~L~~~-Gv~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy 701 (852)
.+.|++||++||++++.++++.|+++ |. +|.+|++||||++++.+.... + -.+++||
T Consensus 810 vr~Im~~Q~~tI~rG~~Si~~~L~~~~g~----~p~dYisf~~LRn~~~l~~~~------------~------~vteqIY 867 (1068)
T PLN02866 810 VRAIMHWQYRTICRGKNSILHNLYDLLGP----KTHDYISFYGLRAYGRLFEGG------------P------LATSQIY 867 (1068)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhCC----CHHHeEeeecccccccccCCC------------c------ccceeeE
Confidence 99999999999999999999999985 43 578999999999987652110 0 1235799
Q ss_pred EEeeEEEEeceEEEEeccCCCCCCcCCCCCCceEEEeecCccccccc---CCCCCchHHHHHHHHHHHHhCCCccc---c
Q 003057 702 IHSKGMIVDDEYVIIGSANINQRSLEGTRDTEIAMGAYQPRHTWASK---LSNPYGQVYGYRMSLWAEHIGAIEEC---F 775 (852)
Q Consensus 702 vHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~~~~~---~~~~~~~~~~lR~~Lw~eHlg~~~~~---~ 775 (852)
||||+|||||++++|||||||+|||.|++|||++++++|+++..... ...+++++++||++||+||||+.++. +
T Consensus 868 VHsK~~IvDD~~~iiGSaNiN~RS~~G~rDsEia~~~~d~~~~~s~m~G~~~~ag~fa~~lR~~L~~EHLG~~~~~~~~~ 947 (1068)
T PLN02866 868 VHSKIMIVDDRAALIGSANINDRSLLGSRDSEIGVVIEDKEFVDSSMNGKPWKAGKFAHSLRLSLWSEHLGLRAGEIDKI 947 (1068)
T ss_pred EEeeEEEEcCcEEEEccccccccccccCcCcceeeeeecccccccccCCccccccchhHHHHHHHHHHHhCCCchhhhcc
Confidence 99999999999999999999999999999999999999998754322 23466899999999999999997643 4
Q ss_pred CCCCcchhhH-HHHHHHHHhhHH---------------------Hh----------------------------------
Q 003057 776 NRPESLGCVR-RVRSLSEQNWKQ---------------------YA---------------------------------- 799 (852)
Q Consensus 776 ~~p~~~~~~~-~~~~~~~~n~~~---------------------~~---------------------------------- 799 (852)
.||-+-+.++ -|+..|..|... |.
T Consensus 948 ~DP~~d~~~k~~W~~~A~~Nt~Iy~~vF~c~P~d~Vr~~~~~~~~~~~~~~~~gh~~i~lg~~~~~~~~~~~~~~~~~~~ 1027 (1068)
T PLN02866 948 IDPVCDTTYKDLWMATAKTNTDIYQDVFSCIPNDLIHSRAALRQSMASRKEKLGHTTIDLGIAPEKLESYENGDIKSSDP 1027 (1068)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccHHHHHHHhhhcccccCccccccccccccccccccccchhhhH
Confidence 5787766675 468888776521 11
Q ss_pred hhhhcccccccccCccccCCCCCccCCCCCCc
Q 003057 800 ADEVTQLKGHLLKYPVDVDPTGKVNALPGCAQ 831 (852)
Q Consensus 800 ~~~~~~~~g~l~~~p~~~~~~~~~~~~~g~~~ 831 (852)
.+++..++||||.||+.|++++.+.|.-+..+
T Consensus 1028 ~~~l~~I~G~lV~fPL~Fl~~E~L~p~~~~~e 1059 (1068)
T PLN02866 1028 MERLKSVRGHLVSFPLDFMCQEDLRPVFNESE 1059 (1068)
T ss_pred HHHHhhceEEEEechhhhhhhccCCCCcCccc
Confidence 13467899999999999999999988766443
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=2.1e-49 Score=457.50 Aligned_cols=334 Identities=23% Similarity=0.315 Sum_probs=253.9
Q ss_pred CCCccccCceeEEeecccccCCCccceeccCCcccCchhHHHHHHHHHHhccceEEEEEEecCceeEEEeCCCCchHHHH
Q 003057 212 TYFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGD 291 (852)
Q Consensus 212 ~~~p~~~g~~v~l~~dg~~~~~~~~~i~~~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~~~l~~ 291 (852)
+.+|...||+++++.||. +.|++++++|++||++|+|++| ++++|..+..+.+
T Consensus 132 ~~~p~~~~n~~~ll~~g~--------------------~~~~~l~~~I~~Ak~~I~i~~y-------i~~~d~~g~~i~~ 184 (509)
T PRK12452 132 GGGPAADRTTTKLLTNGD--------------------QTFSEILQAIEQAKHHIHIQYY-------IYKSDEIGTKVRD 184 (509)
T ss_pred cCCcccCCCEEEEeCCHH--------------------HHHHHHHHHHHHhCCEEEEEEE-------EEeCCcHHHHHHH
Confidence 457899999999999997 6899999999999999999998 8999999999999
Q ss_pred HHHHhhhcCCeEEEEEeCCCccccccccccccccCCCcHHHHhhhcCCCeEEEeccCCCCCCCcccccccccccccCccc
Q 003057 292 LLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQK 371 (852)
Q Consensus 292 lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK 371 (852)
+|++||+|||+||||+ |+.|+... .....+.++++||+|..+.+... ++. ....++|||||
T Consensus 185 aL~~aa~rGV~VRiL~-D~~Gs~~~------------~~~~~~~L~~aGi~v~~f~P~~~---~~~---~~~~n~RnHRK 245 (509)
T PRK12452 185 ALIKKAKDGVIVRFLY-DGLGSNTL------------RRRFLQPMKEAGIEIVEFDPIFS---AWL---LETVNYRNHRK 245 (509)
T ss_pred HHHHHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHhCCeEEEEecCccc---ccc---cccccCCCCCe
Confidence 9999999999999995 99887421 13456678899999987754321 111 12467899999
Q ss_pred EEEEecCCCCCcccEEEEEcccccCCCccCCCCCCCCcccccccCCCCCCCCcCCCCCCCCCCCeeeccceeeChHHHHH
Q 003057 372 TVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDI 451 (852)
Q Consensus 372 ~vVVD~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa~dl 451 (852)
++|||++ +||+||+|+++++... . ....+|||+|++++||+|.++
T Consensus 246 i~VIDg~--------ia~~GG~Ni~d~y~~~-~--------------------------~~~~~WrD~~~~i~Gp~V~~l 290 (509)
T PRK12452 246 IVIVDGE--------IGFTGGLNVGDEYLGR-S--------------------------KKFPVWRDSHLKVEGKALYKL 290 (509)
T ss_pred EEEEcCC--------EEEeCCcccchhhcCC-C--------------------------CCCCCceEEEEEEECHHHHHH
Confidence 9999996 9999999999964321 0 124689999999999999999
Q ss_pred HHHHHHHHhhhcCCCCccccCCCCchhhhhhccCcccccCcccCCCCCCCCCcccceeeeccCCccccCCCCCccccccc
Q 003057 452 LTNFEERWLKASKPHGLQKLKSSNDDSLLKLERIPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSVKGFPVEPRDATSM 531 (852)
Q Consensus 452 ~~~F~~rW~~~~~~~~~~~l~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~ 531 (852)
+..|.++|+.+++... ...+.. ... +.. .+.. +...+...+|++.+. |..
T Consensus 291 ~~~F~~dW~~~~~~~~----~~~~~~-~~~----~~~-----~~~~-~~~~~~~~~q~~~sg--------p~~------- 340 (509)
T PRK12452 291 QAIFLEDWLYASSGLN----TYSWDP-FMN----RQY-----FPGK-EISNAEGAVQIVASG--------PSS------- 340 (509)
T ss_pred HHHHHHHHHHhhCccc----cccccc-ccc----hhc-----CCCc-cccCCCeEEEEEeCC--------CCc-------
Confidence 9999999998764310 000000 000 000 0000 001123457887763 111
Q ss_pred ccccCcccchhhHHHHHHHHHHHhccceEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEec
Q 003057 532 NLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIP 611 (852)
Q Consensus 532 ~~~~g~~~~~e~sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP 611 (852)
.+.+|+++|+++|++||++|||+||||+++. .+..++..| +.+||+|+|++|
T Consensus 341 ---------~~~~i~~~~l~~I~~A~~~I~I~tpYf~pd~-----------------~l~~aL~~A--a~rGV~Vrii~p 392 (509)
T PRK12452 341 ---------DDKSIRNTLLAVMGSAKKSIWIATPYFIPDQ-----------------ETLTLLRLS--AISGIDVRILYP 392 (509)
T ss_pred ---------hhHHHHHHHHHHHHHhhhEEEEECCccCCCH-----------------HHHHHHHHH--HHcCCEEEEEcC
Confidence 1348999999999999999999999999874 233334333 469999999999
Q ss_pred CCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchHHH
Q 003057 612 MWPEGITTSPQIQRILYWQHKTMQMMYETIYKALVESGLQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQAL 691 (852)
Q Consensus 612 ~~peg~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~Gv~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (852)
..+ ++...+|+.+ ++++.|+++|++++.. .
T Consensus 393 ~~~--------D~~~~~~a~~-------~~~~~L~~aGv~I~~y-------------------~---------------- 422 (509)
T PRK12452 393 GKS--------DSIISDQASQ-------SYFTPLLKAGASIYSY-------------------K---------------- 422 (509)
T ss_pred CCC--------ChHHHHHHHH-------HHHHHHHHcCCEEEEe-------------------c----------------
Confidence 855 3555565543 6789999999988521 0
Q ss_pred hhccCeeeEEEEeeEEEEeceEEEEeccCCCCCCcCCCCCCceEEEeecCcc
Q 003057 692 AKKNRRFQIYIHSKGMIVDDEYVIIGSANINQRSLEGTRDTEIAMGAYQPRH 743 (852)
Q Consensus 692 ~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~ 743 (852)
..++|+|++||||++++|||+|||.||+. .|.|+++.++|++.
T Consensus 423 -------~~~lHaK~~ivD~~~a~vGS~Nld~RS~~--~n~E~~~~i~~~~~ 465 (509)
T PRK12452 423 -------DGFMHAKIVLVDDKIATIGTANMDVRSFE--LNYEIISVLYESET 465 (509)
T ss_pred -------CCCeeeeEEEECCCEEEEeCcccCHhHhh--hhhhccEEEECHHH
Confidence 24899999999999999999999999998 89999999999864
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=2.5e-48 Score=448.36 Aligned_cols=330 Identities=22% Similarity=0.380 Sum_probs=252.5
Q ss_pred CCCccccCceeEEeecccccCCCccceeccCCcccCchhHHHHHHHHHHhccceEEEEEEecCceeEEEeCCCCchHHHH
Q 003057 212 TYFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGD 291 (852)
Q Consensus 212 ~~~p~~~g~~v~l~~dg~~~~~~~~~i~~~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~~~l~~ 291 (852)
+.+|...||+|+++.||. ++|++|+++|++||++|+|++| ++++|..+.++.+
T Consensus 108 ~~~~~~~~n~v~ll~~g~--------------------~~~~~l~~~I~~Ak~~I~l~~y-------i~~~d~~g~~i~~ 160 (483)
T PRK01642 108 QGIPGLKGNQLRLLTNGD--------------------ETFQAIIRDIELARHYILMEFY-------IWRPDGLGDQVAE 160 (483)
T ss_pred cCCCccCCCEEEEEcCHH--------------------HHHHHHHHHHHHhhcEEEEEEE-------EEccCCcHHHHHH
Confidence 457899999999999997 6899999999999999999998 8888889999999
Q ss_pred HHHHhhhcCCeEEEEEeCCCccccccccccccccCCCcHHHHhhhcCCCeEEEec-cCCCCCCCcccccccccccccCcc
Q 003057 292 LLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLC-PRSAGKGHSFVKKQEVGTIYTHHQ 370 (852)
Q Consensus 292 lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-p~~~~~~~~~~~~~~~~~~~~hHq 370 (852)
+|++||+|||+||||+ |+.|+.... .....+.+++.||++..+ |.... ++. ....++|||+
T Consensus 161 aL~~aa~rGV~VriL~-D~~Gs~~~~-----------~~~~~~~L~~~Gi~v~~~~p~~~~---~~~---~~~~n~RnHr 222 (483)
T PRK01642 161 ALIAAAKRGVRVRLLY-DSIGSFAFF-----------RSPYPEELRNAGVEVVEFLKVNLG---RVF---RRRLDLRNHR 222 (483)
T ss_pred HHHHHHHCCCEEEEEE-ECCCCCCCC-----------cHHHHHHHHHCCCEEEEecCCCcc---ccc---ccccccccCc
Confidence 9999999999999995 998875321 122556688899999887 43211 111 1246789999
Q ss_pred cEEEEecCCCCCcccEEEEEcccccCC-CccCCCCCCCCcccccccCCCCCCCCcCCCCCCCCCCCeeeccceeeChHHH
Q 003057 371 KTVVVDADAGQFKRKIIAFVGGLDLCK-GRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAY 449 (852)
Q Consensus 371 K~vVVD~~~~~~~~~~vafvGG~nl~~-~r~Dt~~H~~~~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa~ 449 (852)
|++|||++ +||+||+|+++ +|.... ....+|||+|++++||+|.
T Consensus 223 Ki~VIDg~--------ia~~Gg~Ni~d~~y~~~~---------------------------~~~~~w~D~~~~i~Gp~v~ 267 (483)
T PRK01642 223 KIVVIDGY--------IAYTGSMNVVDPEYFKQD---------------------------PGVGQWRDTHVRIEGPVVT 267 (483)
T ss_pred eEEEEcCC--------EEEeCCcccCCHHHhCCC---------------------------CCCCCcEEEEEEEEcHHHH
Confidence 99999996 99999999999 544211 1246899999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCccccCCCCchhhhhhccCcccccCcccCCCCCCCCCcccceeeeccCCccccCCCCCccccc
Q 003057 450 DILTNFEERWLKASKPHGLQKLKSSNDDSLLKLERIPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSVKGFPVEPRDAT 529 (852)
Q Consensus 450 dl~~~F~~rW~~~~~~~~~~~l~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~ 529 (852)
+++..|.++|+.++++.... ..|... ..+ ...++...+|++.|. |..+
T Consensus 268 ~l~~~F~~dW~~~~~~~~~~--------------~~~~~~---~~~---~~~~~~~~~qi~~sg--------P~~~---- 315 (483)
T PRK01642 268 ALQLIFAEDWEWETGERILP--------------PPPDVL---IMP---FEEASGHTVQVIASG--------PGDP---- 315 (483)
T ss_pred HHHHHHHHHHHHHhCcccCC--------------CCcccc---cCC---ccCCCCceEEEEeCC--------CCCh----
Confidence 99999999999876541000 001000 000 011123457887662 2211
Q ss_pred ccccccCcccchhhHHHHHHHHHHHhccceEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEE
Q 003057 530 SMNLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYIL 609 (852)
Q Consensus 530 ~~~~~~g~~~~~e~sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~Iv 609 (852)
+..++++|+++|.+||++|||++|||+++. .+..++..| +.+||+|+|+
T Consensus 316 ------------~~~~~~~~~~~I~~A~~~I~I~tpYfip~~-----------------~i~~aL~~A--a~rGV~Vril 364 (483)
T PRK01642 316 ------------EETIHQFLLTAIYSARERLWITTPYFVPDE-----------------DLLAALKTA--ALRGVDVRII 364 (483)
T ss_pred ------------hhHHHHHHHHHHHHhccEEEEEcCCcCCCH-----------------HHHHHHHHH--HHcCCEEEEE
Confidence 347999999999999999999999999864 233334333 4799999999
Q ss_pred ecCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchH
Q 003057 610 IPMWPEGITTSPQIQRILYWQHKTMQMMYETIYKALVESGLQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQ 689 (852)
Q Consensus 610 lP~~peg~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~Gv~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 689 (852)
+|..++ +.+++|..+ ++++.|.++|++++.. .
T Consensus 365 ~p~~~d--------~~~~~~~~~-------~~~~~L~~~Gv~I~~y-------------------~-------------- 396 (483)
T PRK01642 365 IPSKND--------SLLVFWASR-------AFFTELLEAGVKIYRY-------------------E-------------- 396 (483)
T ss_pred eCCCCC--------cHHHHHHHH-------HHHHHHHHcCCEEEEe-------------------C--------------
Confidence 998653 455666544 6788999999987521 0
Q ss_pred HHhhccCeeeEEEEeeEEEEeceEEEEeccCCCCCCcCCCCCCceEEEeecCcc
Q 003057 690 ALAKKNRRFQIYIHSKGMIVDDEYVIIGSANINQRSLEGTRDTEIAMGAYQPRH 743 (852)
Q Consensus 690 ~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~ 743 (852)
..++|||+|||||++++|||+|||.||+. .|.|+++.++|++.
T Consensus 397 ---------~~~~HaK~~ivD~~~~~vGS~N~d~rS~~--~N~E~~~~i~d~~~ 439 (483)
T PRK01642 397 ---------GGLLHTKSVLVDDELALVGTVNLDMRSFW--LNFEITLVIDDTGF 439 (483)
T ss_pred ---------CCceEeEEEEECCCEEEeeCCcCCHhHHh--hhhcceEEEECHHH
Confidence 13899999999999999999999999998 89999999999864
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=9.4e-47 Score=423.65 Aligned_cols=342 Identities=22% Similarity=0.304 Sum_probs=251.2
Q ss_pred ccccCceeEEeecccccCCCccceeccCCcccCchhHHHHHHHHHHhccceEEEEEEecCceeEEEeCCCCchHHHHHHH
Q 003057 215 PLRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLK 294 (852)
Q Consensus 215 p~~~g~~v~l~~dg~~~~~~~~~i~~~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~ 294 (852)
+++.||+|+++.||+ ++|++++++|++||++|+|++| ++.+|..+..|.++|+
T Consensus 3 ~~~~gN~v~ll~~G~--------------------e~~~~l~~~I~~Ak~~I~i~~y-------i~~~d~~g~~l~~aL~ 55 (411)
T PRK11263 3 SWREGNRIQLLENGE--------------------QYYPRVFEAIAAAQEEILLETF-------ILFEDKVGKQLHAALL 55 (411)
T ss_pred cccCCCeEEEEeCHH--------------------HHHHHHHHHHHHhCCEEEEEEE-------EEecCchHHHHHHHHH
Confidence 688999999999997 6899999999999999999998 7777888899999999
Q ss_pred HhhhcCCeEEEEEeCCCccccccccccccccCCCcHHHHhhhcCCCeEEEeccCCCCCCCcccccccccccccCcccEEE
Q 003057 295 IKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVV 374 (852)
Q Consensus 295 ~~a~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vV 374 (852)
+||+|||+||||+ |..++... +....+.|.+.||++..+.+.. +++ ......+.|+|+|++|
T Consensus 56 ~aa~rGV~Vril~-D~~gs~~~------------~~~~~~~L~~aGv~v~~~~p~~----~~~-~~~~~~~~R~HrKiiV 117 (411)
T PRK11263 56 AAAQRGVKVEVLV-DGYGSPDL------------SDEFVNELTAAGVRFRYFDPRP----RLL-GMRTNLFRRMHRKIVV 117 (411)
T ss_pred HHHHCCCEEEEEE-ECCCCCCC------------CHHHHHHHHHCCeEEEEeCCcc----ccc-ccccccccCCcceEEE
Confidence 9999999999996 98876421 2345677888999998764321 111 0112234599999999
Q ss_pred EecCCCCCcccEEEEEcccccCCCccCCCCCCCCcccccccCCCCCCCCcCCCCCCCCCCCeeeccceeeChHHHHHHHH
Q 003057 375 VDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTN 454 (852)
Q Consensus 375 VD~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa~dl~~~ 454 (852)
||++ +|||||+|++++++.. ....+|+|++++|+||+|.++...
T Consensus 118 IDg~--------~a~vGg~N~~~~~~~~----------------------------~g~~~w~D~~v~i~Gp~V~~l~~~ 161 (411)
T PRK11263 118 IDGR--------IAFVGGINYSADHLSD----------------------------YGPEAKQDYAVEVEGPVVADIHQF 161 (411)
T ss_pred EcCC--------EEEEcCeEchHhhccc----------------------------cCCCCceEEEEEEECHHHHHHHHH
Confidence 9997 9999999999864421 012479999999999999999999
Q ss_pred HHHHHhhhcCCCCccccCCCCchhhhhhccCcccccCcccCCCCCCCCCcccceeeeccCCccccCCCCCcccccccccc
Q 003057 455 FEERWLKASKPHGLQKLKSSNDDSLLKLERIPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSVKGFPVEPRDATSMNLV 534 (852)
Q Consensus 455 F~~rW~~~~~~~~~~~l~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~ 534 (852)
|.+.|....... . ... ..+. .+ ....++...+|++.+- |..
T Consensus 162 f~~~w~~~~~~~----------~-~~~--~~~~------~~--~~~~~g~~~~~~v~~~-----------p~~------- 202 (411)
T PRK11263 162 ELEALPGQSAAR----------R-WWR--RHHR------AE--ENRQPGEAQALLVWRD-----------NEE------- 202 (411)
T ss_pred HHHHHhhcccch----------h-hhc--cccc------Cc--ccCCCCCeEEEEEECC-----------Ccc-------
Confidence 999997532110 0 000 0000 00 0011222345655431 110
Q ss_pred cCcccchhhHHHHHHHHHHHhccceEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCCC
Q 003057 535 CGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMWP 614 (852)
Q Consensus 535 ~g~~~~~e~sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~p 614 (852)
....|+.+|+++|++|++.|||+||||+++. .+..+|..| +++||+|+||+|..|
T Consensus 203 ------~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~~-----------------~l~~aL~~A--a~RGV~V~ii~~~~~ 257 (411)
T PRK11263 203 ------HRDDIERHYLKALRQARREVIIANAYFFPGY-----------------RLLRALRNA--ARRGVRVRLILQGEP 257 (411)
T ss_pred ------hHHHHHHHHHHHHHHhceEEEEEecCcCCCH-----------------HHHHHHHHH--HHCCCEEEEEeCCCC
Confidence 1247999999999999999999999999863 233444333 479999999999755
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchHHHhhc
Q 003057 615 EGITTSPQIQRILYWQHKTMQMMYETIYKALVESGLQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQALAKK 694 (852)
Q Consensus 615 eg~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~Gv~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (852)
+++++.|..+ .+++.|+++|++++. | +
T Consensus 258 --------d~~~~~~a~~-------~~~~~Ll~~Gv~I~~----y----~------------------------------ 284 (411)
T PRK11263 258 --------DMPIVRVGAR-------LLYNYLLKGGVQIYE----Y----C------------------------------ 284 (411)
T ss_pred --------CcHHHHHHHH-------HHHHHHHHCCCEEEE----e----c------------------------------
Confidence 3566666544 578899999998752 1 0
Q ss_pred cCeeeEEEEeeEEEEeceEEEEeccCCCCCCcCCCCCCceEEEeecCcccccccCCCCCchHHHHHHHHHHHHhC
Q 003057 695 NRRFQIYIHSKGMIVDDEYVIIGSANINQRSLEGTRDTEIAMGAYQPRHTWASKLSNPYGQVYGYRMSLWAEHIG 769 (852)
Q Consensus 695 ~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~~~~~~~~~~~~~~~lR~~Lw~eHlg 769 (852)
..++|||+|||||++++|||+|||.|||. .|.|+++.|+|+++. .++......+++||.-
T Consensus 285 ----~~~lHaK~~viD~~~~~vGS~Nld~rS~~--lN~E~~~~i~d~~~a---------~~l~~~~~~~~~~~s~ 344 (411)
T PRK11263 285 ----RRPLHGKVALMDDHWATVGSSNLDPLSLS--LNLEANLIIRDRAFN---------QTLRDNLNGLIAADCQ 344 (411)
T ss_pred ----CCCceeEEEEECCCEEEEeCCcCCHHHhh--hhhhcCEEEeCHHHH---------HHHHHHHHHHHHhhCE
Confidence 13799999999999999999999999998 899999999998753 1334444555555543
No 9
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=100.00 E-value=3.4e-36 Score=346.54 Aligned_cols=335 Identities=26% Similarity=0.343 Sum_probs=241.6
Q ss_pred ccCceeEEeecccccCCCccceeccCCcccCchhHHHHHHHHHHhccceEEEEEEecCceeEEEeCCCCchHHHHHHHHh
Q 003057 217 RRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIK 296 (852)
Q Consensus 217 ~~g~~v~l~~dg~~~~~~~~~i~~~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~ 296 (852)
..++.++++.++. +.|.+++++|++|+++|+++.| ++.++..+..+.++|.++
T Consensus 57 ~~~~~~~~l~~~~--------------------~~~~~~~~~i~~a~~~I~~~~~-------i~~~d~~~~~i~~~l~~~ 109 (438)
T COG1502 57 ISGNGVDLLKDGA--------------------DAFAALIELIEAAKKSIYLQYY-------IWQDDELGREILDALIEA 109 (438)
T ss_pred CCCCceEEecCHH--------------------HHHHHHHHHHHHHhhEEEEEEE-------EEeCChhHHHHHHHHHHH
Confidence 6788999999886 6799999999999999999988 888888899999999999
Q ss_pred hhcCCeEEEEEeCCCccccccccccccccCCCcHHHHhhhcCCCe-EEEeccCCCCCCCcccccccccccccCcccEEEE
Q 003057 297 SQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSV-QVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVV 375 (852)
Q Consensus 297 a~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVV 375 (852)
|++||+||+|+ |+.++... ........++++++ .+..+.+..... ......+.++|+|++||
T Consensus 110 a~~gv~vr~l~-D~~~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~r~H~K~~vi 172 (438)
T COG1502 110 AKRGVEVRLLL-DDIGSTRG-----------LLKSLLALLKRAGIEEVRLFNPASPRP-----LRFRRLNRRLHRKIVVI 172 (438)
T ss_pred HHcCCEEEEEE-ecCCCccc-----------ccHHHHHHHhcCCceEEEecCCccccc-----chhhhhhccccceEEEE
Confidence 99999999996 98876221 11245667788898 666553321100 01234568999999999
Q ss_pred ecCCCCCcccEEEEEcccccCCCccCCCCCCCCcccccccCCCCCCCCcCCCCCCCCCCCeeeccceeeChHHHHHHHHH
Q 003057 376 DADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTNF 455 (852)
Q Consensus 376 D~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa~dl~~~F 455 (852)
|+. ++|+||.|+.+.++... ....+|+|++++++||+|.++..+|
T Consensus 173 D~~--------i~~vGg~N~~d~y~~~~---------------------------~~~~~~~D~~~~~~g~~v~~l~~~f 217 (438)
T COG1502 173 DGK--------VAFVGGANIGDEYFHKD---------------------------KGLGYWRDLHVRITGPAVADLARLF 217 (438)
T ss_pred cCC--------EEEecCcccchhhhccC---------------------------cCcccceeeeEEEECHHHHHHHHHH
Confidence 996 99999999999866431 0135899999999999999999999
Q ss_pred HHHHhhhcCCCC-ccccCCCCchhhhhhccCcccccCcccCCCCCCCCCcccceeeeccCCccccCCCCCcccccccccc
Q 003057 456 EERWLKASKPHG-LQKLKSSNDDSLLKLERIPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSVKGFPVEPRDATSMNLV 534 (852)
Q Consensus 456 ~~rW~~~~~~~~-~~~l~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~ 534 (852)
.++|+....... +... ..+... ... .........+|++.+.+ ......
T Consensus 218 ~~~w~~~~~~~~~~~~~------------~~~~~~---~~~--~~~~~~~~~~~~~~~~P--------~~~~~~------ 266 (438)
T COG1502 218 IQDWNLESGSSKPLLAL------------VRPPLQ---SLS--LLPVGRGSTVQVLSSGP--------DKGLGS------ 266 (438)
T ss_pred HHHhhhccCcCcccccc------------cccccc---ccc--ccccccCcceEEEecCC--------ccccch------
Confidence 999998743210 0000 000000 000 00011112256666532 111000
Q ss_pred cCcccchhhHHHHHHHHHHHhccceEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCCC
Q 003057 535 CGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMWP 614 (852)
Q Consensus 535 ~g~~~~~e~sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~p 614 (852)
....+...|+.+|.+|+++|+|++|||+++. ++..++..+ +.+|++|+|++|..-
T Consensus 267 ------~~~~~~~~~~~~i~~A~~~i~i~~pYf~~~~-----------------~~~~al~~a--~~~Gv~V~ii~~~~~ 321 (438)
T COG1502 267 ------ELIELNRLLLKAINSARESILIATPYFVPDR-----------------ELLAALKAA--ARRGVDVRIIIPSLG 321 (438)
T ss_pred ------hhhhHHHHHHHHHHhhceEEEEEcCCcCCCH-----------------HHHHHHHHH--HhcCCEEEEEeCCCC
Confidence 0112458999999999999999999999874 333334333 478999999999531
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchHHHhhc
Q 003057 615 EGITTSPQIQRILYWQHKTMQMMYETIYKALVESGLQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQALAKK 694 (852)
Q Consensus 615 eg~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~Gv~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (852)
..+..+++|..+ .++..|.+.|++++..+
T Consensus 322 ------~~d~~~~~~~~~-------~~~~~l~~~gv~i~~~~-------------------------------------- 350 (438)
T COG1502 322 ------ANDSAIVHAAYR-------AYLKELLEAGVKVYEYP-------------------------------------- 350 (438)
T ss_pred ------CCChHHHHHHHH-------HHHHHHHHhCCEEEEec--------------------------------------
Confidence 234556555443 67889999998774210
Q ss_pred cCeee-EEEEeeEEEEeceEEEEeccCCCCCCcCCCCCCceEEEeecCcc
Q 003057 695 NRRFQ-IYIHSKGMIVDDEYVIIGSANINQRSLEGTRDTEIAMGAYQPRH 743 (852)
Q Consensus 695 ~~~~~-iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~ 743 (852)
. .++|+|+|||||++++|||+|||.||+. .|+|++++|+|+.+
T Consensus 351 ----~g~~lH~K~~iiD~~~~~vGS~N~~~rS~~--lN~E~~~~i~d~~~ 394 (438)
T COG1502 351 ----GGAFLHSKVMIIDDRTVLVGSANLDPRSLR--LNFEVGLVIEDPEL 394 (438)
T ss_pred ----CCCcceeeEEEEcCCEEEEeCCcCCHhHHH--HhhhheeEEeCHHH
Confidence 1 3899999999999999999999999999 89999999999853
No 10
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=100.00 E-value=8.8e-35 Score=328.88 Aligned_cols=352 Identities=16% Similarity=0.170 Sum_probs=222.1
Q ss_pred cCceeEEeecccccCCCccceeccCCcccCchhHHHHHHHHHHhccceEEEEEEecCceeEEEeCCCCchHHHHHHHHhh
Q 003057 218 RGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKS 297 (852)
Q Consensus 218 ~g~~v~l~~dg~~~~~~~~~i~~~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a 297 (852)
.++.++++.+|. ++|++|+++|++|+++|+|++| ++.+|+.+..|.++|.+|+
T Consensus 23 ~~~~v~~l~~~~--------------------~f~~~Ll~~I~~Ak~~I~l~~y-------~~~~D~~g~~il~AL~~a~ 75 (451)
T PRK09428 23 SPDDVETLYSPA--------------------DFRETLLEKIASAKKRIYIVAL-------YLEDDEAGREILDALYQAK 75 (451)
T ss_pred CcccEEEEcCHH--------------------HHHHHHHHHHHhcCCeEEEEEE-------EecCCchHHHHHHHHHHHH
Confidence 568999999986 6899999999999999999999 8888899999999999884
Q ss_pred --hcCCeEEEEEeCCCcc-ccccccccccccCCCcHHHHhhhcC--CCeEEEecc-CCCCCCCcccccccccccccCccc
Q 003057 298 --QEGVRVLILAWDDPTS-RSILGYKTDGIMSTNDEETRRFFKH--SSVQVLLCP-RSAGKGHSFVKKQEVGTIYTHHQK 371 (852)
Q Consensus 298 --~rGV~VriLvwD~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~v~~~p-~~~~~~~~~~~~~~~~~~~~hHqK 371 (852)
++||+|+||+ |.... .+..|... ......+...+++ +|+++.++. +.. ....+.++|+|
T Consensus 76 ~~~~gv~VrvLv-D~~Ra~Rg~iG~~~----~~~~~~~~~~l~~~~~gv~v~~f~~p~~----------~~e~~gr~HrK 140 (451)
T PRK09428 76 QQNPELDIKVLV-DWHRAQRGLIGAAA----SNTNADWYCEMAQEYPGVDIPVYGVPVN----------TREALGVLHLK 140 (451)
T ss_pred hcCCCcEEEEEE-EcccccccccccCC----CCcCHHHHHHHHHhCCCceEEEcCCccc----------cchhhhhceee
Confidence 5899999997 97421 11111100 0011233444543 368988772 211 01245689999
Q ss_pred EEEEecCCCCCcccEEEEEcccccCCCccCCCCCCCCcccccccCCCCCCCCcCCCCCCCCCCCeeeccceeeChHHHHH
Q 003057 372 TVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDI 451 (852)
Q Consensus 372 ~vVVD~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa~dl 451 (852)
++|||++ |+|+| .||.+.|+... . ....|.+++|+||+++++
T Consensus 141 i~IiD~~--------v~ysG-aNi~d~Yl~~~---------------------------~--~~r~Dry~~i~g~~la~~ 182 (451)
T PRK09428 141 GFIIDDT--------VLYSG-ASLNNVYLHQH---------------------------D--KYRYDRYHLIRNAELADS 182 (451)
T ss_pred EEEECCC--------EEEec-ccccHHHhcCC---------------------------c--ccCcceEEEEeCchHHHH
Confidence 9999996 99987 79999754310 0 112377888999999999
Q ss_pred HHHHHHHHhhhcCCCCccccCCCCc---hhh-hhhccCc-ccccCcccCCCCCCCCCcccceeeeccCCccccCCCCCcc
Q 003057 452 LTNFEERWLKASKPHGLQKLKSSND---DSL-LKLERIP-EIVGMTEASYLSENDPEAWHAQVFRSIDSNSVKGFPVEPR 526 (852)
Q Consensus 452 ~~~F~~rW~~~~~~~~~~~l~~~~~---~~l-~~~~~~p-~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~ 526 (852)
...|++.|..++..- ..+..... ... ..+.... .+....... .. ..+.-.+++...++
T Consensus 183 ~~~fi~~~~~~~~~v--~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~-~~~~~~~~v~p~~g------------ 245 (451)
T PRK09428 183 MVNFIQQNLLNSPAV--NRLDQPNRPKTKEIKNDIRQFRQRLRDAAYQF--QG-QANNDELSVTPLVG------------ 245 (451)
T ss_pred HHHHHHHHhhccCcc--ccccccccccchhhHHHHHHHHHHHhhhccCc--cc-ccCCCCeEEeeeec------------
Confidence 999999998754321 00000000 000 0000000 000000000 00 00000122221110
Q ss_pred cccccccccCcccchhhHHHHHHHHHHHhccceEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceE
Q 003057 527 DATSMNLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAA 606 (852)
Q Consensus 527 ~~~~~~~~~g~~~~~e~sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V 606 (852)
.|+ ...+...+..+|.+|++.|+|.||||+++. .+..++..+ +++|++|
T Consensus 246 --------~g~----~~~l~~~~~~li~~A~~~i~I~TPYF~p~~-----------------~l~~~L~~a--~~rGv~V 294 (451)
T PRK09428 246 --------LGK----KNLLNKTIFHLMASAEQKLTICTPYFNLPA-----------------ILVRNIIRL--LRRGKKV 294 (451)
T ss_pred --------cCC----chHHHHHHHHHHhccCcEEEEEeCCcCCCH-----------------HHHHHHHHH--HhcCCcE
Confidence 011 136888999999999999999999999874 244444444 3689999
Q ss_pred EEEecCCCCCCCCChhhHHHHHHHHHHHHHHHH----HH---HHHHHHcC---CCCCcCCCCceeeeccCCccccCCCCC
Q 003057 607 YILIPMWPEGITTSPQIQRILYWQHKTMQMMYE----TI---YKALVESG---LQNKYVPQDYLNFFCLGNREALDGVDS 676 (852)
Q Consensus 607 ~IvlP~~peg~~~~~~~~~i~~~~~~t~~~~~~----~~---~~~L~~~G---v~~~~~p~~y~~~~~l~~~~~~~~~~~ 676 (852)
.||+|.....+....++++++.|.... .+|. .. ++.|.++| ++++.+
T Consensus 295 ~Ii~~~~~andfy~~~d~~~~~~~~~p--y~ye~~lr~f~~~~~~li~~G~l~v~i~~~--------------------- 351 (451)
T PRK09428 295 EIIVGDKTANDFYIPPDEPFKIIGALP--YLYEINLRRFAKRLQYYIDNGQLNVRLWKD--------------------- 351 (451)
T ss_pred EEEcCCcccccCcCCCccHHHHhhhhH--HHHHHhhhhhHHHhhhhhhcCcceEEEEec---------------------
Confidence 999997532221122445555554321 1111 11 22445555 443210
Q ss_pred CCCCCCCCCCchHHHhhccCeeeEEEEeeEEEEeceEEEEeccCCCCCCcCCCCCCceEEEeecCcc
Q 003057 677 SNAKDSTAANTPQALAKKNRRFQIYIHSKGMIVDDEYVIIGSANINQRSLEGTRDTEIAMGAYQPRH 743 (852)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~ 743 (852)
..-.+|+|.|+|||+|++|||+|||.||+. +|+|+++.|+|+..
T Consensus 352 ---------------------~~~~~HaK~i~vD~~~~~iGS~Nld~RS~~--ln~E~~l~i~d~~~ 395 (451)
T PRK09428 352 ---------------------GDNSYHLKGIWVDDRWMLLTGNNLNPRAWR--LDLENALLIHDPKQ 395 (451)
T ss_pred ---------------------CCCcceEEEEEEeCCEEEEcCCCCChhHhh--hcccceEEEECChH
Confidence 013799999999999999999999999999 99999999999864
No 11
>PHA02820 phospholipase-D-like protein; Provisional
Probab=100.00 E-value=1.7e-33 Score=317.63 Aligned_cols=323 Identities=16% Similarity=0.207 Sum_probs=208.6
Q ss_pred hHHHHHHHHHHhccceEEEEEEecCceeEEEeCCC----CchHHHHHHHHhhhcCCeEEEEEeCCCcccccccccccccc
Q 003057 250 SCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGS----NTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIM 325 (852)
Q Consensus 250 ~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~----~~~~l~~lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~~ 325 (852)
..|+.+.++|.+||++|+|+++- +..++. .+.+|.++|++||+|||+||||+ |..+..
T Consensus 26 ~t~~~~~~lI~~Ak~~I~I~s~y------f~~~d~~~~~~G~~i~~aL~~aA~rGV~VRIL~-d~~~~~----------- 87 (424)
T PHA02820 26 STFNFWREILSNTTKTLDISSFY------WSLSDEVGTNFGTMILNEIIQLPKRGVRVRIAV-NKSNKP----------- 87 (424)
T ss_pred CHHHHHHHHHHhhCcEEEEEeEE------EecCccccchhHHHHHHHHHHHHHCCCEEEEEE-CCCCCc-----------
Confidence 46899999999999999999982 332332 37899999999999999999996 864310
Q ss_pred CCCcHHHHhhhcCCCeEEEeccCCCCCCCcccccccccccccCcccEEEEecCCCCCcccEEEEEcccccCCCccCCCCC
Q 003057 326 STNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAH 405 (852)
Q Consensus 326 ~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~r~Dt~~H 405 (852)
....+.|+.+||++..+++.. + ...++|+|++|||++ ++|+||+|+.+ |+.+
T Consensus 88 ----~~~~~~L~~aGv~v~~~~~~~-----~-------~~~~~HrK~~VIDg~--------~~~iGS~Nid~-rsl~--- 139 (424)
T PHA02820 88 ----LKDVELLQMAGVEVRYIDITN-----I-------LGGVLHTKFWISDNT--------HIYLGSANMDW-RSLT--- 139 (424)
T ss_pred ----hhhHHHHHhCCCEEEEEecCC-----C-------CcccceeeEEEECCC--------EEEEeCCcCCh-hhhh---
Confidence 122355778999998775321 1 235899999999996 99999999966 4321
Q ss_pred CCCcccccccCCCCCCCCcCCCCCCCCCCCeeecccee--eChHHHHHHHHHHHHHhhhcCCCCccccCCCCchhhhhhc
Q 003057 406 PLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRI--DGPAAYDILTNFEERWLKASKPHGLQKLKSSNDDSLLKLE 483 (852)
Q Consensus 406 ~~~~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i--~Gpaa~dl~~~F~~rW~~~~~~~~~~~l~~~~~~~l~~~~ 483 (852)
..+|+++++ +||+|.++.+.|.+.|+..++.... . ...
T Consensus 140 -----------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~~~-~----~~~------ 179 (424)
T PHA02820 140 -----------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNLPY-N----WKN------ 179 (424)
T ss_pred -----------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCCCC-c----ccc------
Confidence 124677777 7999999999999999976532100 0 000
Q ss_pred cCcccccCcccCCCCCCCCCcccceeeeccCCccccCCCCCcccccccccccCcccchhhHHHHHHHHHHHhccceEEEe
Q 003057 484 RIPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSVKGFPVEPRDATSMNLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIE 563 (852)
Q Consensus 484 ~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~~g~~~~~e~sI~~ayl~aI~~A~~~IYIE 563 (852)
..|..... ..|. .....+....+++.+. |... ...+ .....++|+.+|.+||++|||+
T Consensus 180 ~~~~~~~~-~~p~-~~~~~~~~~~~~~sss-----------P~~~----~~~~-----r~~~~~~~l~~I~~Ak~~I~I~ 237 (424)
T PHA02820 180 FYPLYYNT-DHPL-SLNVSGVPHSVFIASA-----------PQQL----CTME-----RTNDLTALLSCIRNASKFVYVS 237 (424)
T ss_pred cccccccc-CCCc-ccccCCccceEEEeCC-----------Chhh----cCCC-----CCchHHHHHHHHHHHhhEEEEE
Confidence 01110000 0000 0000111112333331 1100 0000 0135799999999999999999
Q ss_pred eccccccCC-------CcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCCCCCCCCChhhHHHHHHHHHHHHH
Q 003057 564 NQYFLGSSF-------NWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMWPEGITTSPQIQRILYWQHKTMQM 636 (852)
Q Consensus 564 nqYFi~~~~-------~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~peg~~~~~~~~~i~~~~~~t~~~ 636 (852)
++||+|+.+ .|+ .+-.+|.++ .+.|||+|+|++|.|++. ..+.|+.
T Consensus 238 tpyfvP~~~~~~~~~~yw~-------------~i~~AL~~A-A~~RGV~VriLvp~~~d~--------~~~~~a~----- 290 (424)
T PHA02820 238 VMNFIPIIYSKAGKILFWP-------------YIEDELRRA-AIDRKVSVKLLISCWQRS--------SFIMRNF----- 290 (424)
T ss_pred EccccceeeccCCcccchH-------------HHHHHHHHH-HHhCCCEEEEEEeccCCC--------CccHHHH-----
Confidence 999999821 232 233333211 137999999999998753 2222322
Q ss_pred HHHHHHHHHHHcCCCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchHHHhhccCeeeEEEEeeEEEEeceEEEE
Q 003057 637 MYETIYKALVESGLQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQALAKKNRRFQIYIHSKGMIVDDEYVII 716 (852)
Q Consensus 637 ~~~~~~~~L~~~Gv~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iI 716 (852)
...++.|.++|++++ +.+|..-.+. . ..+ ...++|||+||||| ++.|
T Consensus 291 --~~~l~~L~~~gv~I~------Vk~y~~p~~~-----~-----~~~--------------~~~f~HaK~~vvD~-~a~I 337 (424)
T PHA02820 291 --LRSIAMLKSKNINIE------VKLFIVPDAD-----P-----PIP--------------YSRVNHAKYMVTDK-TAYI 337 (424)
T ss_pred --HHHHHHHhccCceEE------EEEEEcCccc-----c-----cCC--------------cceeeeeeEEEEcc-cEEE
Confidence 245778888998763 1222110000 0 000 12599999999997 6999
Q ss_pred eccCCCCCCcCCCCCCceEEEeecCc
Q 003057 717 GSANINQRSLEGTRDTEIAMGAYQPR 742 (852)
Q Consensus 717 GSANln~RSm~g~~DsEi~v~i~d~~ 742 (852)
||||||.||+. .|.|+++.+++++
T Consensus 338 GTsN~D~rsf~--~n~ev~~~i~~~~ 361 (424)
T PHA02820 338 GTSNWTGNYFT--DTCGVSINITPDD 361 (424)
T ss_pred ECCcCCHHHHh--ccCcEEEEEecCC
Confidence 99999999999 8999999998863
No 12
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=100.00 E-value=5.5e-33 Score=310.09 Aligned_cols=315 Identities=18% Similarity=0.207 Sum_probs=204.6
Q ss_pred hHHHHHHHHHHhccceEEEEEEecCceeEE--EeCCCCchHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccccCC
Q 003057 250 SCWQDVYDAINQARRLIYITGWSVYHTVRL--VRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMST 327 (852)
Q Consensus 250 ~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l--~r~~~~~~~l~~lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~~~~ 327 (852)
..|++++++|++||++|+|++| + ++++..+.+|.++|++||+|||+||||+ |..++.
T Consensus 31 ~~~~~l~~~I~~Ak~~I~i~~y-------i~~~~~d~~g~~i~~aL~~aa~rGV~Vril~-D~~~~~------------- 89 (369)
T PHA03003 31 STYECFDEIISQAKKYIYIASF-------CCNLRSTPEGRLILDKLKEAAESGVKVTILV-DEQSGD------------- 89 (369)
T ss_pred CHHHHHHHHHHhhhhEEEEEEE-------EecccCCchHHHHHHHHHHhccCCCeEEEEe-cCCCCC-------------
Confidence 6799999999999999999999 5 6788899999999999999999999996 975421
Q ss_pred CcHHHHhhhcCCCeEEEeccCCCCCCCcccccccccccccCcccEEEEecCCCCCcccEEEEEcccccCCCccCCCCCCC
Q 003057 328 NDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPL 407 (852)
Q Consensus 328 ~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~ 407 (852)
...+.|+..||++..++... .+..+.+|.|++|||++ +||+||+||+++++.. .
T Consensus 90 ---~~~~~L~~~Gv~v~~~~~~~-----------~~~~~~~~~k~~IiDg~--------~~y~Gg~Ni~~~~~~~-~--- 143 (369)
T PHA03003 90 ---KDEEELQSSNINYIKVDIGK-----------LNNVGVLLGSFWVSDDR--------RCYIGNASLTGGSIST-I--- 143 (369)
T ss_pred ---ccHHHHHHcCCEEEEEeccc-----------cCCCCceeeeEEEEcCc--------EEEEecCccCCcccCc-c---
Confidence 23456788899987654211 00012458899999997 9999999999965432 1
Q ss_pred CcccccccCCCCCCCCcCCCCCCCCCCCeeeccceeeChHHHHHHHHHHHHHhhhcCCCCccccCCCCchhhhhhccCcc
Q 003057 408 FKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTNFEERWLKASKPHGLQKLKSSNDDSLLKLERIPE 487 (852)
Q Consensus 408 ~~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~~~~~~~~l~~~~~~~l~~~~~~p~ 487 (852)
...+.|+|. ||+|.+++..|.+.|+.+++......... ....|.
T Consensus 144 -----------------------~~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~~~~~~~~--------~~~~~~ 187 (369)
T PHA03003 144 -----------------------KTLGVYSTY-----PPLATDLRRRFDTFKAFNKNKSVFNRLCC--------ACCLPV 187 (369)
T ss_pred -----------------------ccceeEecC-----cHHHHHHHHHHHHHHHhcCCCCccccccc--------ccCCcc
Confidence 113579993 99999999999999997654320000000 000000
Q ss_pred cccCcccCCCCCCCCCcccceeeeccCCccccCCCCCcccccccccccCcccchhhHHHHHHHHHHHhccceEEEeeccc
Q 003057 488 IVGMTEASYLSENDPEAWHAQVFRSIDSNSVKGFPVEPRDATSMNLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYF 567 (852)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~~g~~~~~e~sI~~ayl~aI~~A~~~IYIEnqYF 567 (852)
. .+. ....+ ...+++.+. |..+.. . ....++++|+++|.+||++|+|+++||
T Consensus 188 ~-----~~~-~~~~~--~~~~~~~s~--------P~~~~~---------~---~~~~~~~~ll~~I~~Ak~~I~I~t~yf 239 (369)
T PHA03003 188 S-----TKY-HINNP--IGGVFFSDS--------PEHLLG---------Y---SRTLDADVVLHKIKSAKKSIDLELLSL 239 (369)
T ss_pred c-----ccc-cccCC--CcceEEecC--------ChHHcC---------C---CCCcCHHHHHHHHHHHhhEEEEEEecc
Confidence 0 000 00001 111222221 111100 0 012478999999999999999999999
Q ss_pred cccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003057 568 LGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMWPEGITTSPQIQRILYWQHKTMQMMYETIYKALVE 647 (852)
Q Consensus 568 i~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~peg~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~ 647 (852)
+|..... .... ....+..+|.++. +++||+|+|++|.+....+ ....+++.|++
T Consensus 240 ~P~~~~d---~~~~----~~~~i~~AL~~AA-a~RGV~VRILv~~~~~~~~------------------~~~~~~~~L~~ 293 (369)
T PHA03003 240 VPVIRED---DKTT----YWPDIYNALIRAA-INRGVKVRLLVGSWKKNDV------------------YSMASVKSLQA 293 (369)
T ss_pred ccEEeeC---CCCc----cHHHHHHHHHHHH-HcCCCEEEEEEecCCcCCc------------------hhhhHHHHHHH
Confidence 8752100 0000 0113444443321 2799999999998532110 01145778999
Q ss_pred cCCCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchHHHhhccCeeeEEEEeeEEEEeceEEEEeccCCCCCCcC
Q 003057 648 SGLQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQALAKKNRRFQIYIHSKGMIVDDEYVIIGSANINQRSLE 727 (852)
Q Consensus 648 ~Gv~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~ 727 (852)
+|+.... .+.+|. ...|+|+|||||++++|||+||+.||+.
T Consensus 294 ~G~~~~i----~vri~~-----------------------------------~~~H~K~~VVD~~~a~iGS~N~d~~s~~ 334 (369)
T PHA03003 294 LCVGNDL----SVKVFR-----------------------------------IPNNTKLLIVDDEFAHITSANFDGTHYL 334 (369)
T ss_pred cCCCCCc----eEeeec-----------------------------------CCCCceEEEEcCCEEEEeccccCchhhc
Confidence 9964210 011110 1169999999999999999999999998
Q ss_pred CCCCCceEEEeecCc
Q 003057 728 GTRDTEIAMGAYQPR 742 (852)
Q Consensus 728 g~~DsEi~v~i~d~~ 742 (852)
.+.|+++.++++.
T Consensus 335 --~~~e~~~~~~~~~ 347 (369)
T PHA03003 335 --HHAFVSFNTIDKE 347 (369)
T ss_pred --cCCCeEEecCChh
Confidence 6899988776654
No 13
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.96 E-value=4.9e-29 Score=245.71 Aligned_cols=153 Identities=50% Similarity=0.789 Sum_probs=136.5
Q ss_pred eeeeceEEEEEEEEeeCCCCCCccccccccccccccccccccc----cccCCCCCCCCcEEEEEECCEEEeeeeeecCCC
Q 003057 36 VLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKI----ESHLSDKITSDPYVTVSICGAVIGRTFVISNSE 111 (852)
Q Consensus 36 ~~~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~ 111 (852)
.+||||+|+|+|+||++|++||+++++.++||.++....+... ..++.+.|++||||+|++++.+++||++++++.
T Consensus 2 ~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~ 81 (158)
T cd04015 2 AVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSE 81 (158)
T ss_pred ceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCC
Confidence 4689999999999999999999999999999987654333322 123345889999999999998889999999999
Q ss_pred CCeeeeEEEEeecCCCcEEEEEEEecCCcCCceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEee
Q 003057 112 SPVWMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (852)
Q Consensus 112 nP~WnE~F~~~v~~~~~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~ 188 (852)
||+|||+|.|++++..+.|+|+|+|++..++++||++.+|++++..|...+.|++|.+.++++.+.+++|+++++|+
T Consensus 82 nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 82 NPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred CCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 99999999999998888999999999998999999999999999999999999999998999988899999999985
No 14
>PF12357 PLD_C: Phospholipase D C terminal ; InterPro: IPR024632 Phospholipase D (PLD) catalyses the hydrolysis of the phosphodiester bond of glycerophospholipids to generate phosphatidic acid and a free head group. Phospholipase D activities have been detected in simple to complex organisms from viruses and bacteria to yeast, plants, and mammals []. In higher organisms, PLD specifically catalyzes the hydrolysis of phosphatidylcholine (PC) to phosphatidic acid (PA) and choline and is activated in response to stimulators of vesicle transport, endocytosis, exocytosis, cell migration, and mitosis. This entry represents the C-terminal domain of eukaryotic phospholipase D. The domain is approximately 70 amino acids in length and contains a conserved FPD sequence motif.
Probab=99.92 E-value=1.1e-25 Score=184.60 Aligned_cols=74 Identities=66% Similarity=1.203 Sum_probs=71.3
Q ss_pred CccccCCCCcchhhHHHHHHHHHhhHHHhhhhhcccccccccCccccCCCCCccCCCCCCcCCCCCCccccccc
Q 003057 771 IEECFNRPESLGCVRRVRSLSEQNWKQYAADEVTQLKGHLLKYPVDVDPTGKVNALPGCAQFPDVGGNILGSFI 844 (852)
Q Consensus 771 ~~~~~~~p~~~~~~~~~~~~~~~n~~~~~~~~~~~~~g~l~~~p~~~~~~~~~~~~~g~~~f~~~~~~~~g~~~ 844 (852)
+++.|.+|+|++||++||++|++||++|+++++.+|+||||+||+.|+.||+|++|||+|+||||+|+|||+++
T Consensus 1 le~~F~~PesleCVr~Vn~iae~nW~~y~~ee~~dl~GHLl~YPv~V~~dG~V~~LpG~e~FPDt~~~VlG~~S 74 (74)
T PF12357_consen 1 LEECFLEPESLECVRRVNEIAEENWKQYASEEVTDLPGHLLKYPVQVDRDGKVTPLPGCEFFPDTGGKVLGSKS 74 (74)
T ss_pred CcccccCCCCHHHHHHHHHHHHHHHHHhhccccccCCCccccCCeEEcCCCCEeeCCCCCcCCCCCCcccCCCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999873
No 15
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.88 E-value=2.4e-22 Score=188.39 Aligned_cols=117 Identities=18% Similarity=0.346 Sum_probs=104.1
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecC-CCCCeeeeEE
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISN-SESPVWMQHF 119 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~-t~nP~WnE~F 119 (852)
|+|+|+|++|++|++.+ + |++||||+|.++++++ ||+++.+ +.||+|||+|
T Consensus 2 g~L~v~v~~Ak~l~~~~-~--------------------------g~sDPYv~i~lg~~~~-kT~v~~~~~~nP~WNe~F 53 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-L--------------------------TRMDPYCRIRVGHAVY-ETPTAYNGAKNPRWNKTI 53 (121)
T ss_pred cEEEEEEEEccCCCcCC-C--------------------------CCCCceEEEEECCEEE-EeEEccCCCCCCccCeEE
Confidence 89999999999998765 2 4599999999999988 9999877 8999999999
Q ss_pred EEeecCCCcEEEEEEEecCCcC-CceeeeEEEeee-eecCCCeeeeeeecccCCCCCCCCCceeeeeEEe
Q 003057 120 NVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVE-KLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (852)
Q Consensus 120 ~~~v~~~~~~l~~~V~D~d~~~-~~~iG~~~i~l~-~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f 187 (852)
+|++++....|.|+|+|+|.++ |++||.+.|+|. .+..|...+.||+|...+++ +..|+|+|+++|
T Consensus 54 ~f~v~~~~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~--~~~g~i~l~l~y 121 (121)
T cd04016 54 QCTLPEGVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGE--DKEGMINLVFSY 121 (121)
T ss_pred EEEecCCCcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCC--CCceEEEEEEeC
Confidence 9999887788999999999988 789999999995 57788889999999876665 456999999987
No 16
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.88 E-value=8.2e-22 Score=189.79 Aligned_cols=129 Identities=20% Similarity=0.362 Sum_probs=113.8
Q ss_pred CCceeeeeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCC
Q 003057 32 GSLKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSE 111 (852)
Q Consensus 32 ~~~~~~~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~ 111 (852)
...|+. ..|.|.|+|||+|+.+ .+|||+|+|++++++||+++.++.
T Consensus 5 n~~R~~---~sL~v~V~EAk~Lp~~-------------------------------~~~Y~~i~Ld~~~vaRT~v~~~~~ 50 (146)
T cd04013 5 NSRRTE---NSLKLWIIEAKGLPPK-------------------------------KRYYCELCLDKTLYARTTSKLKTD 50 (146)
T ss_pred cceEEE---EEEEEEEEEccCCCCc-------------------------------CCceEEEEECCEEEEEEEEEcCCC
Confidence 344554 8999999999999864 379999999999999999999999
Q ss_pred CCeeeeEEEEeecCCCcEEEEEEEe-cCCc----CCceeeeEEEeeeeecCCCeeeeeeecccCCCCC-------CCCCc
Q 003057 112 SPVWMQHFNVPVAHSAAEVHFVVKD-NDFV----GSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKP-------CKAGA 179 (852)
Q Consensus 112 nP~WnE~F~~~v~~~~~~l~~~V~D-~d~~----~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~-------~~~~g 179 (852)
||.|||.|+|++.+..+.++|+|++ .+.. ++++||++.||+++|..|..++.||+|++.++++ .+.++
T Consensus 51 nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~ 130 (146)
T cd04013 51 TLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESP 130 (146)
T ss_pred CCcceeeEEecCCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCC
Confidence 9999999999999998999999954 4333 4689999999999999999999999999988887 67889
Q ss_pred eeeeeEEeecccccc
Q 003057 180 VLSLSIQYTPVENMS 194 (852)
Q Consensus 180 ~I~l~l~f~p~~~~~ 194 (852)
+||++++|.++..+|
T Consensus 131 ~lrik~rf~~~~~lP 145 (146)
T cd04013 131 SIRIKARYQSTRVLP 145 (146)
T ss_pred EEEEEEEEEEeeeCC
Confidence 999999999987665
No 17
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.86 E-value=2.4e-21 Score=182.91 Aligned_cols=114 Identities=21% Similarity=0.306 Sum_probs=102.9
Q ss_pred EEEEEEEeeC---CCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEE
Q 003057 43 LDIWVKEAKN---LPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHF 119 (852)
Q Consensus 43 L~v~I~~Ak~---L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F 119 (852)
|+|+|++|++ |+.+|. .|++||||+|++++++. ||++++++.||+|||+|
T Consensus 2 L~v~v~~A~~~~~l~~~d~--------------------------~g~sDPYv~i~~g~~~~-rTk~~~~~~nP~WnE~f 54 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDG--------------------------RGSTDAYCVAKYGPKWV-RTRTVEDSSNPRWNEQY 54 (126)
T ss_pred eEEEEEEeECCcccccccc--------------------------CCCCCeeEEEEECCEEe-EcCcccCCCCCcceeEE
Confidence 8999999999 776664 57799999999999887 99999999999999999
Q ss_pred EEeecCCCcEEEEEEEecCCc-------CCceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeee
Q 003057 120 NVPVAHSAAEVHFVVKDNDFV-------GSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSL 183 (852)
Q Consensus 120 ~~~v~~~~~~l~~~V~D~d~~-------~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l 183 (852)
.|++.+....|.|+|||++.. ++++||++.|+|+++..+...+.||+|.+.++++.+..|+|++
T Consensus 55 ~f~v~~~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 55 TWPVYDPCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred EEEecCCCCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 999988888999999999886 6899999999999999999999999998877666778888874
No 18
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.84 E-value=1.7e-20 Score=178.34 Aligned_cols=117 Identities=23% Similarity=0.372 Sum_probs=101.6
Q ss_pred EEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEe
Q 003057 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (852)
Q Consensus 43 L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~~ 122 (852)
++|+|++|++|+++|. .|++||||+|.+++.+. ||++++++.||+|||+|.|.
T Consensus 1 ~~V~V~~A~~L~~~d~--------------------------~g~~dpYv~v~l~~~~~-kT~v~~~t~nP~Wne~f~F~ 53 (126)
T cd08682 1 VQVTVLQARGLLCKGK--------------------------SGTNDAYVIIQLGKEKY-STSVKEKTTSPVWKEECSFE 53 (126)
T ss_pred CEEEEEECcCCcCCCC--------------------------CcCCCceEEEEECCeee-eeeeecCCCCCEeCceEEEE
Confidence 5899999999998875 56699999999998877 99999999999999999999
Q ss_pred ecC------CCcEEEEEEEecCCcC-CceeeeEEEeeeeec--CCCeeeeeeecccCCCCCCCCCceeeeeEE
Q 003057 123 VAH------SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLC--SGDKIEGAFPILNSSRKPCKAGAVLSLSIQ 186 (852)
Q Consensus 123 v~~------~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~--~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~ 186 (852)
+.. ....|.|+|+|++.++ +++||++.|+|+++. .+...+.||+|.+..+++.+..|+|+++++
T Consensus 54 v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 54 LPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred ecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 876 3478999999999887 899999999999988 567788999998666655556799998874
No 19
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.83 E-value=5.2e-20 Score=173.73 Aligned_cols=119 Identities=27% Similarity=0.381 Sum_probs=107.0
Q ss_pred EEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEe
Q 003057 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (852)
Q Consensus 43 L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~~ 122 (852)
|+|+|++|++|+.+|. .+++||||+|.+++..+.||+++.++.||+|||+|.|+
T Consensus 2 L~v~v~~a~~L~~~d~--------------------------~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~ 55 (121)
T cd04042 2 LDIHLKEGRNLAARDR--------------------------GGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLP 55 (121)
T ss_pred eEEEEEEeeCCCCcCC--------------------------CCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEE
Confidence 7999999999998875 45699999999998777899999999999999999999
Q ss_pred ecCCCcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEeec
Q 003057 123 VAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (852)
Q Consensus 123 v~~~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~p 189 (852)
+.+..+.|.|+|||++..+ +++||++.++++++..+...+.|++|.+.++. +..|+|++.++|.|
T Consensus 56 v~~~~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~--~~~G~l~l~~~~~~ 121 (121)
T cd04042 56 IEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSD--EDLGYISLVVTLTP 121 (121)
T ss_pred ecCCCCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCCc--cCceEEEEEEEECC
Confidence 9877788999999999985 89999999999999988889999999776552 46799999999876
No 20
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.81 E-value=3.4e-19 Score=169.33 Aligned_cols=119 Identities=20% Similarity=0.331 Sum_probs=101.7
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~ 120 (852)
..|+|+|++|++|+..+ ++||||+|.+++.+++||++. ++.||+|||+|.
T Consensus 4 ~~L~V~Vi~A~~L~~~~-----------------------------~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~ 53 (126)
T cd08400 4 RSLQLNVLEAHKLPVKH-----------------------------VPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFV 53 (126)
T ss_pred eEEEEEEEEeeCCCCCC-----------------------------CCCeeEEEEECCEeEEEeecC-CCCCCccCCEEE
Confidence 57999999999998632 489999999998888899985 589999999999
Q ss_pred EeecCCC-cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEeec
Q 003057 121 VPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (852)
Q Consensus 121 ~~v~~~~-~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~p 189 (852)
|++.... ..++|.|+|++..+ +++||++.|||.++..|...+.||+|....+++.+..|+|+++++|.+
T Consensus 54 f~~~~~~~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 54 FDDLPPDVNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EecCCCCcCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 9975443 57899999998876 889999999999999998899999997654433456799999999976
No 21
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.81 E-value=2.3e-19 Score=169.20 Aligned_cols=119 Identities=24% Similarity=0.311 Sum_probs=101.7
Q ss_pred EEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEe
Q 003057 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (852)
Q Consensus 43 L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~~ 122 (852)
|.|+|++|++|+.++.. .|.+||||.|++++..++||+++++|.||+|||+|.|+
T Consensus 2 l~v~v~~a~~L~~~~~~-------------------------~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~ 56 (121)
T cd08401 2 LKIKIGEAKNLPPRSGP-------------------------NKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFE 56 (121)
T ss_pred eEEEEEEccCCCCCCCC-------------------------CCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEE
Confidence 78999999999987521 35689999999988878899999999999999999999
Q ss_pred ecCCCcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEe
Q 003057 123 VAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (852)
Q Consensus 123 v~~~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f 187 (852)
+.+....|.|.|+|++..+ +++||++.++++++..+...+.||+|... +...+..|+||++++|
T Consensus 57 v~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~-~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 57 IPRTFRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPV-DADSEVQGKVHLELRL 121 (121)
T ss_pred cCCCCCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEcc-CCCCcccEEEEEEEEC
Confidence 9876678999999999886 89999999999999988888999999542 2112356999998875
No 22
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.80 E-value=2.9e-19 Score=174.57 Aligned_cols=123 Identities=18% Similarity=0.195 Sum_probs=105.2
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecC-CCCCeeeeEEE
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISN-SESPVWMQHFN 120 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~-t~nP~WnE~F~ 120 (852)
.|+|+|++|++|+++|. .|++||||+|.+++++. ||+++.+ +.||+|||+|.
T Consensus 1 ~L~V~Vi~A~~L~~~d~--------------------------~g~sDPYV~v~l~~~~~-kTk~~~~~t~nP~WNE~F~ 53 (150)
T cd04019 1 YLRVTVIEAQDLVPSDK--------------------------NRVPEVFVKAQLGNQVL-RTRPSQTRNGNPSWNEELM 53 (150)
T ss_pred CEEEEEEEeECCCCCCC--------------------------CCCCCeEEEEEECCEEe-eeEeccCCCCCCcccCcEE
Confidence 48999999999998886 46699999999999766 9999977 69999999999
Q ss_pred EeecCCC-cEEEEEEEecCCcC-CceeeeEEEeeeeecCC----CeeeeeeecccCCC-----CCCCCCceeeeeEEeec
Q 003057 121 VPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSG----DKIEGAFPILNSSR-----KPCKAGAVLSLSIQYTP 189 (852)
Q Consensus 121 ~~v~~~~-~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g----~~~~~w~~L~~~~~-----~~~~~~g~I~l~l~f~p 189 (852)
|++.++. +.|.|+|+|++..+ +++||++.|||+++..+ ...+.||+|.+..+ ++.+..|+|+|.++|.+
T Consensus 54 f~v~~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 54 FVAAEPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred EEecCccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 9997654 68999999998775 89999999999998743 45689999987765 56677899999999975
Q ss_pred cc
Q 003057 190 VE 191 (852)
Q Consensus 190 ~~ 191 (852)
..
T Consensus 134 ~~ 135 (150)
T cd04019 134 GY 135 (150)
T ss_pred cc
Confidence 43
No 23
>PRK05443 polyphosphate kinase; Provisional
Probab=99.80 E-value=2.9e-18 Score=202.48 Aligned_cols=266 Identities=17% Similarity=0.171 Sum_probs=184.8
Q ss_pred hHHHHHHHHHHhccc-----eEEEEEEecCceeEEEeCCCCchHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccc
Q 003057 250 SCWQDVYDAINQARR-----LIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGI 324 (852)
Q Consensus 250 ~~~~~l~~aI~~Ak~-----~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~ 324 (852)
+.|+.+++.|++|.+ +|.++-|.+. . ...+.++|+.||++||+|+||| +...- +
T Consensus 348 ~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~-------~---~s~iv~aL~~Aa~~Gk~V~vlv-e~kar----------f 406 (691)
T PRK05443 348 ESFDPVVEFLRQAAADPDVLAIKQTLYRTS-------K---DSPIVDALIEAAENGKQVTVLV-ELKAR----------F 406 (691)
T ss_pred cCchHHHHHHHHhccCCCeeEEEEEEEEec-------C---CHHHHHHHHHHHHcCCEEEEEE-ccCcc----------c
Confidence 679999999999998 8999988432 1 2789999999999999999998 64321 1
Q ss_pred cCCCcHHHHhhhcCCCeEEEeccCCCCCCCcccccccccccccCcccEEEEecCCCCCcccEEEEEcccccCCCccCCCC
Q 003057 325 MSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPA 404 (852)
Q Consensus 325 ~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~r~Dt~~ 404 (852)
....+..+.+.|+.+||+|++-.+ .+..|.|+++||++.++ .-+..+++|+.|+....
T Consensus 407 de~~n~~~~~~L~~aGv~V~y~~~----------------~~k~HaK~~lid~~e~~-~~~~~~~iGTgN~n~~s----- 464 (691)
T PRK05443 407 DEEANIRWARRLEEAGVHVVYGVV----------------GLKTHAKLALVVRREGG-GLRRYVHLGTGNYNPKT----- 464 (691)
T ss_pred cHHHHHHHHHHHHHcCCEEEEccC----------------CccceeEEEEEEeecCC-ceeEEEEEcCCCCCcch-----
Confidence 111233566778899999965321 14699999999986433 33458999999987641
Q ss_pred CCCCcccccccCCCCCCCCcCCCCCCCCCCCeeecccee-eChHHHHHHHHHHHHHhhhcCCCCccccCCCCchhhhhhc
Q 003057 405 HPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRI-DGPAAYDILTNFEERWLKASKPHGLQKLKSSNDDSLLKLE 483 (852)
Q Consensus 405 H~~~~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i-~Gpaa~dl~~~F~~rW~~~~~~~~~~~l~~~~~~~l~~~~ 483 (852)
...|.|+.+.+ .+..+.|+...|...|.......
T Consensus 465 ----------------------------~~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~~----------------- 499 (691)
T PRK05443 465 ----------------------------ARLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPVK----------------- 499 (691)
T ss_pred ----------------------------hhhccceeEEEeChHHHHHHHHHHHHHhCcCcccc-----------------
Confidence 13588999995 45589999999998865421100
Q ss_pred cCcccccCcccCCCCCCCCCcccceeeeccCCccccCCCCCcccccccccccCcccchhhHHHHHHHHHHHhccc----e
Q 003057 484 RIPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSVKGFPVEPRDATSMNLVCGKNVLIDMSIHTAYVKAIRAAQH----F 559 (852)
Q Consensus 484 ~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~~g~~~~~e~sI~~ayl~aI~~A~~----~ 559 (852)
+ -.++-+ |.. ....+.+.+...|.+|++ +
T Consensus 500 ---------------------~-~~l~~s---------P~~----------------~~~~l~~~i~~ei~~Ak~G~~a~ 532 (691)
T PRK05443 500 ---------------------L-RKLLVS---------PFT----------------LRERLLELIDREIANARAGKPAR 532 (691)
T ss_pred ---------------------c-cEEeec---------Ccc----------------HHHHHHHHHHHHHHHHhcCCCCE
Confidence 0 000000 111 134688899999999999 9
Q ss_pred EEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEe----------cCCCCCCCCChhhHHHHHH
Q 003057 560 IYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILI----------PMWPEGITTSPQIQRILYW 629 (852)
Q Consensus 560 IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~Ivl----------P~~peg~~~~~~~~~i~~~ 629 (852)
|+|.++|+. +. .+..+|..| +.+||+|.+++ |..++ +..+
T Consensus 533 I~ik~n~l~-d~-----------------~ii~aL~~A--s~~GV~V~liVRGiC~l~pgipg~sd--------~i~v-- 582 (691)
T PRK05443 533 IIAKMNSLV-DP-----------------QIIDALYEA--SQAGVKIDLIVRGICCLRPGVPGLSE--------NIRV-- 582 (691)
T ss_pred EEEEcCCCC-CH-----------------HHHHHHHHH--HHCCCeEEEEEecccccCCCCCCCCC--------CEEE--
Confidence 999999965 32 244444443 47899999999 43332 2111
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchHHHhhccCeeeEEEEeeEEEE
Q 003057 630 QHKTMQMMYETIYKALVESGLQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQALAKKNRRFQIYIHSKGMIV 709 (852)
Q Consensus 630 ~~~t~~~~~~~~~~~L~~~Gv~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIV 709 (852)
.+++..++++ .++++ |-..
T Consensus 583 ---------~s~v~r~Leh-~rIy~----------------------------------------------f~~g----- 601 (691)
T PRK05443 583 ---------RSIVGRFLEH-SRIYY----------------------------------------------FGNG----- 601 (691)
T ss_pred ---------HHHHHHHHhc-CEEEE----------------------------------------------EeCC-----
Confidence 1455666652 34321 0000
Q ss_pred eceEEEEeccCCCCCCcCCCCCCceEEEeecCcc
Q 003057 710 DDEYVIIGSANINQRSLEGTRDTEIAMGAYQPRH 743 (852)
Q Consensus 710 DD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~ 743 (852)
||.+++||||||+.||+. ++.|+++.|+|+..
T Consensus 602 d~~~~~iGSAn~d~Rsl~--~r~Ev~~~i~d~~~ 633 (691)
T PRK05443 602 GDEEVYISSADWMPRNLD--RRVEVLFPILDPRL 633 (691)
T ss_pred CCcEEEEECCCCCccccc--ceEEEeEEEeCHHH
Confidence 889999999999999998 99999999999874
No 24
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.79 E-value=4.3e-19 Score=166.64 Aligned_cols=116 Identities=18% Similarity=0.320 Sum_probs=99.8
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecC-CCCCeeeeEE
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISN-SESPVWMQHF 119 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~-t~nP~WnE~F 119 (852)
|+|+|+|++|++|++++. .+.+||||+|++++.+. ||+++.+ +.||+|||+|
T Consensus 1 g~L~V~v~~A~~L~~~~~--------------------------~~~~dpyv~v~~~~~~~-kT~~~~~~~~nP~Wne~f 53 (118)
T cd08681 1 GTLVVVVLKARNLPNKRK--------------------------LDKQDPYCVLRIGGVTK-KTKTDFRGGQHPEWDEEL 53 (118)
T ss_pred CEEEEEEEEccCCCCCCc--------------------------CCCCCceEEEEECCCcc-ccccccCCCCCCccCceE
Confidence 789999999999998875 34589999999988654 9999865 7999999999
Q ss_pred EEeecCCC-cEEEEEEEecCCcCCceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEe
Q 003057 120 NVPVAHSA-AEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (852)
Q Consensus 120 ~~~v~~~~-~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f 187 (852)
.|++.+.. +.|.|+|||++..++++||++.++++++..+...+.|++|.. +++ ..|+|++.++|
T Consensus 54 ~f~v~~~~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~-~~~---~~G~i~l~l~f 118 (118)
T cd08681 54 RFEITEDKKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTL-KGR---YAGEVYLELTF 118 (118)
T ss_pred EEEecCCCCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEecc-CCc---EeeEEEEEEEC
Confidence 99998643 789999999988778999999999999987777899999964 343 45899999986
No 25
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.77 E-value=2.3e-18 Score=163.00 Aligned_cols=121 Identities=26% Similarity=0.377 Sum_probs=102.4
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC-EEEeeeeeecCCCCCeeeeEE
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG-AVIGRTFVISNSESPVWMQHF 119 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~-~~~~rT~vi~~t~nP~WnE~F 119 (852)
|.|+|+|++|++|++++.. .+.+||||+|.+++ ...+||++++++.||+|||.|
T Consensus 2 g~l~v~v~~a~~L~~~~~~-------------------------~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~ 56 (124)
T cd04044 2 GVLAVTIKSARGLKGSDII-------------------------GGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETK 56 (124)
T ss_pred eEEEEEEEcccCCCccccc-------------------------CCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEE
Confidence 8999999999999976532 34589999999988 567799999999999999999
Q ss_pred EEeecCCCcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEeec
Q 003057 120 NVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (852)
Q Consensus 120 ~~~v~~~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~p 189 (852)
.|.+....+.|.|+|+|.+..+ +++||++.++|.++..+...+.|...+..++++ .|+|+++++|.|
T Consensus 57 ~~~v~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~---~G~i~~~l~~~p 124 (124)
T cd04044 57 YILVNSLTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKP---VGELNYDLRFFP 124 (124)
T ss_pred EEEeCCCCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhcCCcc---ceEEEEEEEeCC
Confidence 9999866789999999998875 889999999999999777766544444556654 499999999986
No 26
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.77 E-value=2.3e-18 Score=163.92 Aligned_cols=119 Identities=18% Similarity=0.262 Sum_probs=100.5
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEE
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~ 121 (852)
.|.|+|++|++|++.|. .+.+||||+|.+++++. ||++++++.||+|||+|.|
T Consensus 1 ~L~V~vi~A~~L~~~d~--------------------------~g~~dpyv~v~~~~~~~-rT~v~~~t~nP~Wne~f~f 53 (127)
T cd04022 1 KLVVEVVDAQDLMPKDG--------------------------QGSSSAYVELDFDGQKK-RTRTKPKDLNPVWNEKLVF 53 (127)
T ss_pred CeEEEEEEeeCCCCCCC--------------------------CCCcCcEEEEEECCEEe-cceeEcCCCCCccceEEEE
Confidence 48999999999998875 45689999999999876 9999999999999999999
Q ss_pred eecCCC----cEEEEEEEecCCc--CCceeeeEEEeeeeec-CCCeeeeeeecccCCCCCCCCCceeeeeEEee
Q 003057 122 PVAHSA----AEVHFVVKDNDFV--GSQIMGAVGIPVEKLC-SGDKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (852)
Q Consensus 122 ~v~~~~----~~l~~~V~D~d~~--~~~~iG~~~i~l~~l~-~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~ 188 (852)
++.+.. ..|.|+|+|.+.. ++++||++.++++++. .+.....||+|... +...+..|+|+|.+.|+
T Consensus 54 ~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~-~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 54 NVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR-GLFSRVRGEIGLKVYIT 126 (127)
T ss_pred EccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC-CCCCCccEEEEEEEEEc
Confidence 997543 4799999998877 4889999999999998 56777899999653 32123568999999875
No 27
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.77 E-value=1.5e-17 Score=195.32 Aligned_cols=262 Identities=16% Similarity=0.171 Sum_probs=180.1
Q ss_pred hHHHHHHHHHHhccc-----eEEEEEEecCceeEEEeCCCCchHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccc
Q 003057 250 SCWQDVYDAINQARR-----LIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGI 324 (852)
Q Consensus 250 ~~~~~l~~aI~~Ak~-----~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~ 324 (852)
+.|+.+++.|++|.+ +|.|+-|. +.. ..++.++|++||++|++|+||| +-.... +
T Consensus 339 ~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr-------~~~---~s~ii~aL~~Aa~~Gk~V~v~v-eLkArf---d------ 398 (672)
T TIGR03705 339 ESFDPVVEFLRQAAEDPDVLAIKQTLYR-------TSK---DSPIIDALIEAAENGKEVTVVV-ELKARF---D------ 398 (672)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEEEE-------ecC---CcHHHHHHHHHHHcCCEEEEEE-Eehhhc---c------
Confidence 578999999999998 89999983 322 2789999999999999999998 621110 0
Q ss_pred cCCCcHHHHhhhcCCCeEEEeccCCCCCCCcccccccccccccCcccEEEEecCCCCCcccEEEEEcccccCCCccCCCC
Q 003057 325 MSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPA 404 (852)
Q Consensus 325 ~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~r~Dt~~ 404 (852)
...+.++.+.|+.+|++|++-- ..+..|+|+++||.+.++ .-+..+++|.-|....
T Consensus 399 -e~~ni~wa~~le~aG~~viyg~----------------~~~k~H~K~~li~r~~~~-~~~~y~~igTgN~n~~------ 454 (672)
T TIGR03705 399 -EEANIRWARRLEEAGVHVVYGV----------------VGLKTHAKLALVVRREGG-ELRRYVHLGTGNYHPK------ 454 (672)
T ss_pred -chhhHHHHHHHHHcCCEEEEcC----------------CCeeeeeEEEEEEEeeCC-ceEEEEEecCCCCCCc------
Confidence 0123356678889999998631 125899999999985322 2234677777665542
Q ss_pred CCCCcccccccCCCCCCCCcCCCCCCCCCCCeeeccce-eeChHHHHHHHHHHHHHhhhcCCCCccccCCCCchhhhhhc
Q 003057 405 HPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCR-IDGPAAYDILTNFEERWLKASKPHGLQKLKSSNDDSLLKLE 483 (852)
Q Consensus 405 H~~~~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~-i~Gpaa~dl~~~F~~rW~~~~~~~~~~~l~~~~~~~l~~~~ 483 (852)
-...|.|+++. ..+..+.|+...|..-|....... +.
T Consensus 455 ---------------------------ta~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~--------~~------- 492 (672)
T TIGR03705 455 ---------------------------TARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPK--------FK------- 492 (672)
T ss_pred ---------------------------ccccccceeEEEeChHHHHHHHHHHHHhhCCCcchh--------hH-------
Confidence 01469999999 788899999999998776321100 00
Q ss_pred cCcccccCcccCCCCCCCCCcccceeeeccCCccccCCCCCcccccccccccCcccchhhHHHHHHHHHHHhccc----e
Q 003057 484 RIPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSVKGFPVEPRDATSMNLVCGKNVLIDMSIHTAYVKAIRAAQH----F 559 (852)
Q Consensus 484 ~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~~g~~~~~e~sI~~ayl~aI~~A~~----~ 559 (852)
.+ -+ -|.. ....+.+.+.+.|.+|++ +
T Consensus 493 ------------------------~l-~~--------~P~~----------------~~~~~~~~i~~ei~~Ak~g~~~~ 523 (672)
T TIGR03705 493 ------------------------HL-LV--------SPFT----------------LRKRLLELIDREIENARAGKPAR 523 (672)
T ss_pred ------------------------HH-Hh--------Ccch----------------HHHHHHHHHHHHHHHHHcCCCCE
Confidence 00 00 0111 134688889999999999 9
Q ss_pred EEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEe----------cCCCCCCCCChhhHHHHHH
Q 003057 560 IYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILI----------PMWPEGITTSPQIQRILYW 629 (852)
Q Consensus 560 IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~Ivl----------P~~peg~~~~~~~~~i~~~ 629 (852)
|+|.++||. +. .+..+|..| +++||+|.+++ |..++. ..+
T Consensus 524 I~ik~n~l~-D~-----------------~ii~aL~~A--s~aGV~V~LivRGiCcL~pgipg~sd~--------i~v-- 573 (672)
T TIGR03705 524 IIAKMNSLV-DP-----------------DLIDALYEA--SQAGVKIDLIVRGICCLRPGVPGLSEN--------IRV-- 573 (672)
T ss_pred EEEEcCCCC-CH-----------------HHHHHHHHH--HHCCCeEEEEEecccccCCCCCCCCCC--------EEE--
Confidence 999999965 32 344444443 47899999999 332221 000
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchHHHhhccCeeeEEEEeeEEEE
Q 003057 630 QHKTMQMMYETIYKALVESGLQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQALAKKNRRFQIYIHSKGMIV 709 (852)
Q Consensus 630 ~~~t~~~~~~~~~~~L~~~Gv~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIV 709 (852)
.+++..+++ |+|+.+.
T Consensus 574 ---------~siv~r~Le-------------------------------------------------------h~rIy~f 589 (672)
T TIGR03705 574 ---------RSIVGRFLE-------------------------------------------------------HSRIYYF 589 (672)
T ss_pred ---------EEEhhHhhC-------------------------------------------------------cCEEEEE
Confidence 022333333 4444444
Q ss_pred ---eceEEEEeccCCCCCCcCCCCCCceEEEeecCc
Q 003057 710 ---DDEYVIIGSANINQRSLEGTRDTEIAMGAYQPR 742 (852)
Q Consensus 710 ---DD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~ 742 (852)
||.+++||||||+.|||. ++.|+++.|+|+.
T Consensus 590 ~~~~d~~~~igSAn~m~Rnl~--~r~E~~~~i~d~~ 623 (672)
T TIGR03705 590 GNGGEEKVYISSADWMTRNLD--RRVEVLFPIEDPT 623 (672)
T ss_pred eCCCCcEEEEECCCCCCCccc--ceEEEEEEEcCHH
Confidence 688999999999999998 9999999999986
No 28
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.77 E-value=4.7e-18 Score=162.91 Aligned_cols=127 Identities=21% Similarity=0.358 Sum_probs=103.1
Q ss_pred eeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeee
Q 003057 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQ 117 (852)
Q Consensus 38 ~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE 117 (852)
|+.|.|+|+|++|++|++.|..+.. -|. + ...+.+||||+|.+++++++||++++++.||+|||
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d~~~~~---~~~-----------~--~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne 64 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTDWSTRH---AVP-----------K--KGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNE 64 (132)
T ss_pred CcceEEEEEEEEecCCCCCCchhhh---ccc-----------c--cCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcce
Confidence 3569999999999999988752100 000 0 00356899999999998888999999999999999
Q ss_pred EEEEeecCCCcEEEEEEEecCCcC-CceeeeEEEeeeeecC--CCeeeeeeecccCCCCCCCCCceeeeeEEeec
Q 003057 118 HFNVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS--GDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (852)
Q Consensus 118 ~F~~~v~~~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~--g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~p 189 (852)
+|.+++. ..+.+.|.|+|++..+ +++||++.++|+++.. +...+.|++|. ..|+|++.+++..
T Consensus 65 ~f~~~v~-~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 65 EFTTEVH-NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred eEEEEcC-CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 9999996 5578999999988776 7899999999999997 56789999993 2379999998764
No 29
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.77 E-value=4.4e-18 Score=159.90 Aligned_cols=117 Identities=22% Similarity=0.404 Sum_probs=101.1
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~ 120 (852)
|+|+|+|++|++|++++. .+.+||||+|.+++.+. ||++++++.||+|||+|.
T Consensus 1 g~l~v~v~~a~~L~~~~~--------------------------~~~~dPyv~v~~~~~~~-~T~~~~~t~nP~W~e~f~ 53 (119)
T cd08377 1 GFLQVKVIRASGLAAADI--------------------------GGKSDPFCVLELVNARL-QTHTIYKTLNPEWNKIFT 53 (119)
T ss_pred CEEEEEEEeeeCCCCCCC--------------------------CCCCCcEEEEEECCEee-ecceecCCcCCccCcEEE
Confidence 789999999999998875 34589999999988765 999999999999999999
Q ss_pred EeecCCCcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEe
Q 003057 121 VPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (852)
Q Consensus 121 ~~v~~~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f 187 (852)
|++.+....+.|.|+|++..+ +++||++.+++.++..+. ..|++|.+..++. +..|+|.+.++|
T Consensus 54 ~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~ 118 (119)
T cd08377 54 FPIKDIHDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILLEMDV 118 (119)
T ss_pred EEecCcCCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEEEEEe
Confidence 999876788999999998865 899999999999998654 5799997655432 356999999887
No 30
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.77 E-value=4.6e-18 Score=161.63 Aligned_cols=122 Identities=18% Similarity=0.290 Sum_probs=103.2
Q ss_pred EEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC-EEEeeeeeecCCCCCeeeeEEEE
Q 003057 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG-AVIGRTFVISNSESPVWMQHFNV 121 (852)
Q Consensus 43 L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~-~~~~rT~vi~~t~nP~WnE~F~~ 121 (852)
|.|+|++|++|+. . .+++||||++.++. ....||++++++.||+|||.|.|
T Consensus 1 l~v~v~~A~~L~~--~--------------------------~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f 52 (126)
T cd08678 1 LLVKNIKANGLSE--A--------------------------AGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLF 52 (126)
T ss_pred CEEEEEEecCCCC--C--------------------------CCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEE
Confidence 6799999999985 2 45699999999974 33459999999999999999999
Q ss_pred eecCCCcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEeecccc
Q 003057 122 PVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTPVEN 192 (852)
Q Consensus 122 ~v~~~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~p~~~ 192 (852)
.+......|.|.|+|++..+ +++||++.++++++..++..+.|++|....++..+..|+|++.++|.+..+
T Consensus 53 ~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 53 ELSPNSKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred EeCCCCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecccc
Confidence 99766678999999999887 889999999999999888888999996553322346799999999987654
No 31
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.76 E-value=3.4e-18 Score=161.21 Aligned_cols=113 Identities=21% Similarity=0.333 Sum_probs=97.0
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEE
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~ 121 (852)
.|+|+|++|++|+.+ ++||||+|.+++.+ +||++++++.||+|||+|.|
T Consensus 1 ~L~V~Vi~a~~L~~~------------------------------~~Dpyv~v~l~~~~-~kT~v~~~t~nP~Wne~F~f 49 (121)
T cd08378 1 YLYVRVVKARGLPAN------------------------------SNDPVVEVKLGNYK-GSTKAIERTSNPEWNQVFAF 49 (121)
T ss_pred CEEEEEEEecCCCcc------------------------------cCCCEEEEEECCcc-ccccccCCCCCCccceEEEE
Confidence 489999999999865 27999999998865 59999999999999999999
Q ss_pred eecCC-CcEEEEEEEecCCcCCceeeeEEEeeeeecCC-----CeeeeeeecccCCCCCCCCCceeeeeEEe
Q 003057 122 PVAHS-AAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSG-----DKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (852)
Q Consensus 122 ~v~~~-~~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~g-----~~~~~w~~L~~~~~~~~~~~g~I~l~l~f 187 (852)
++.+. ...|.|+|||++..++++||++.++|+++..+ ...+.||+|.+..+ .+..|+|+++++|
T Consensus 50 ~~~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~--~~~~G~i~l~~~~ 119 (121)
T cd08378 50 SKDRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG--GRVGGELMLAVWF 119 (121)
T ss_pred EcCCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC--CccceEEEEEEEe
Confidence 99874 57899999999988899999999999998742 23568999977654 2567999999998
No 32
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.75 E-value=2.7e-18 Score=164.47 Aligned_cols=99 Identities=28% Similarity=0.485 Sum_probs=90.4
Q ss_pred eeeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeee
Q 003057 37 LLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWM 116 (852)
Q Consensus 37 ~~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~Wn 116 (852)
.++.|.|+|+|++|++|...|+. ++|||||.+.++++++ ||+++++++||+||
T Consensus 2 ~~~vGLL~v~v~~g~~L~~rD~~--------------------------~sSDPyVVl~lg~q~l-kT~~v~~n~NPeWN 54 (168)
T KOG1030|consen 2 EMLVGLLRVRVKRGKNLAIRDFL--------------------------GSSDPYVVLELGNQKL-KTRVVYKNLNPEWN 54 (168)
T ss_pred CccceEEEEEEEeecCeeeeccc--------------------------cCCCCeEEEEECCeee-eeeeecCCCCCccc
Confidence 36789999999999999987762 4599999999999999 99999999999999
Q ss_pred eEEEEeecCCCcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeee
Q 003057 117 QHFNVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIE 162 (852)
Q Consensus 117 E~F~~~v~~~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~ 162 (852)
|.|.|.+.++...|.++|||+|.++ ||+||.+.|+|..+.+.....
T Consensus 55 e~ltf~v~d~~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~~ 101 (168)
T KOG1030|consen 55 EELTFTVKDPNTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKMD 101 (168)
T ss_pred ceEEEEecCCCceEEEEEEeCCCCCcccccceeeeccHHHHHHhhhh
Confidence 9999999999999999999999998 899999999999999765443
No 33
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.75 E-value=1.1e-17 Score=157.94 Aligned_cols=118 Identities=26% Similarity=0.434 Sum_probs=99.1
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEE
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~ 121 (852)
.|.|+|++|++|+++|. .|++||||+|.+++..++||+++.++.||+|||.|.|
T Consensus 1 ~l~v~vi~a~~L~~~d~--------------------------~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~ 54 (121)
T cd04054 1 SLYIRIVEGKNLPAKDI--------------------------TGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTV 54 (121)
T ss_pred CEEEEEEEeeCCcCCCC--------------------------CCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEE
Confidence 38999999999999885 4568999999999888889999999999999999999
Q ss_pred eecCCCcEEEEEEEecCCcC-CceeeeEEEeeeeecCC-CeeeeeeecccCCCCCCCCCceeeeeEE
Q 003057 122 PVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSG-DKIEGAFPILNSSRKPCKAGAVLSLSIQ 186 (852)
Q Consensus 122 ~v~~~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g-~~~~~w~~L~~~~~~~~~~~g~I~l~l~ 186 (852)
++.+....|.|.|+|++..+ +++||++.++++++..+ ...+.|++|....+.. +..|+|++.++
T Consensus 55 ~~~~~~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~-~~~G~i~l~~~ 120 (121)
T cd04054 55 HLPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDE-EVQGEIHLELS 120 (121)
T ss_pred eeCCCCCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCC-ccccEEEEEEE
Confidence 99876689999999999887 89999999999888754 3478999996432111 24588888764
No 34
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.75 E-value=1.1e-17 Score=157.34 Aligned_cols=113 Identities=27% Similarity=0.374 Sum_probs=95.4
Q ss_pred EEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeecCCCCCeeeeEEE
Q 003057 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--AVIGRTFVISNSESPVWMQHFN 120 (852)
Q Consensus 43 L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~--~~~~rT~vi~~t~nP~WnE~F~ 120 (852)
|+|+|++|++|++.+. .+++||||+|.+.+ ....||++++++.||+|||+|.
T Consensus 2 L~V~vi~a~~L~~~~~--------------------------~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~ 55 (119)
T cd04036 2 LTVRVLRATNITKGDL--------------------------LSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFE 55 (119)
T ss_pred eEEEEEEeeCCCccCC--------------------------CCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEE
Confidence 7899999999998775 34589999999963 3456999999999999999999
Q ss_pred EeecCCC-cEEEEEEEecCCcCCceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEe
Q 003057 121 VPVAHSA-AEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (852)
Q Consensus 121 ~~v~~~~-~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f 187 (852)
|.+.... ..|.|+|||++..++++||++.++++++..|...+.|++|.. .+ .|+|++.+.+
T Consensus 56 f~i~~~~~~~l~v~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L~~-~~-----~g~l~~~~~~ 117 (119)
T cd04036 56 FRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLNP-QG-----KEELEVEFLL 117 (119)
T ss_pred EEeCcccCCEEEEEEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEECCC-CC-----CceEEEEEEe
Confidence 9987654 569999999998888899999999999999999999999953 22 2677766653
No 35
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.75 E-value=9.5e-18 Score=157.05 Aligned_cols=100 Identities=19% Similarity=0.244 Sum_probs=85.4
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC-----C-EEEeeeeeecCCCCCee
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC-----G-AVIGRTFVISNSESPVW 115 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~-----~-~~~~rT~vi~~t~nP~W 115 (852)
.|+|+|++|++|+.++ .|.+||||+|+|- . .+..||+++++++||+|
T Consensus 1 kL~V~Vi~A~~L~~~d---------------------------~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvw 53 (120)
T cd08395 1 KVTVKVVAANDLKWQT---------------------------TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKY 53 (120)
T ss_pred CEEEEEEECcCCCccc---------------------------CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCcc
Confidence 3899999999999765 2568999999983 2 23458999999999999
Q ss_pred eeEEEEeecCCC----cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecc
Q 003057 116 MQHFNVPVAHSA----AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (852)
Q Consensus 116 nE~F~~~v~~~~----~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 168 (852)
||+|.|.+.... ..|.|.|+|++..+ +++||++.+|++++..++..+.|++|.
T Consensus 54 NE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~ 111 (120)
T cd08395 54 NETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLG 111 (120)
T ss_pred CcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECc
Confidence 999999987432 46899999999776 889999999999999888899999994
No 36
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.75 E-value=1.1e-17 Score=157.46 Aligned_cols=120 Identities=25% Similarity=0.357 Sum_probs=99.5
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~ 120 (852)
|.|+|+|++|++|+++|..... ...+++||||+|++++.. +||++++++.||+|||+|.
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~--------------------~~~g~~dPyv~v~~~~~~-~kT~~~~~t~~P~W~e~f~ 59 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGG--------------------LVKGKSDPYVIVRVGAQT-FKSKVIKENLNPKWNEVYE 59 (121)
T ss_pred CeEEEEEEEccCCccccccccc--------------------CCCCCcCCEEEEEECCEe-EEccccCCCCCCcccceEE
Confidence 7899999999999988742100 013568999999998854 5999999999999999999
Q ss_pred EeecC-CCcEEEEEEEecCCcCCceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEe
Q 003057 121 VPVAH-SAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (852)
Q Consensus 121 ~~v~~-~~~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f 187 (852)
+++.. ..+.|.|+|+|++..++++||++.++++++..+...+.||+|.+. ..|+|++.++|
T Consensus 60 ~~v~~~~~~~l~i~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 60 AVVDEVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred EEeCCCCCCEEEEEEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 99864 357899999999887888999999999999987778999999542 23788888774
No 37
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.74 E-value=1.9e-17 Score=156.64 Aligned_cols=117 Identities=29% Similarity=0.402 Sum_probs=97.3
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEE
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~ 121 (852)
.|+|+|++|++|+.+|. .+.+||||+|.+++.+. +|++++++.||+|||+|.|
T Consensus 1 ~L~v~vi~a~~L~~~d~--------------------------~~~~DPyv~v~~~~~~~-kT~v~~~t~nP~Wne~f~f 53 (123)
T cd04025 1 RLRCHVLEARDLAPKDR--------------------------NGTSDPFVRVFYNGQTL-ETSVVKKSCYPRWNEVFEF 53 (123)
T ss_pred CEEEEEEEeeCCCCCCC--------------------------CCCcCceEEEEECCEEE-eceeecCCCCCccCcEEEE
Confidence 38999999999998875 45689999999988765 9999999999999999999
Q ss_pred eecCCC-cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCC---CCCCCceeeeeE
Q 003057 122 PVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRK---PCKAGAVLSLSI 185 (852)
Q Consensus 122 ~v~~~~-~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~---~~~~~g~I~l~l 185 (852)
++.+.. ..|.|+|+|++..+ +++||++.++|.++..+...+.||+|.....+ ..+..|.|+|.+
T Consensus 54 ~~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~ 122 (123)
T cd04025 54 ELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV 122 (123)
T ss_pred EcCCCCCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence 997754 67999999999887 78999999999999877778899999753221 113457777765
No 38
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.74 E-value=3.2e-17 Score=153.44 Aligned_cols=113 Identities=24% Similarity=0.343 Sum_probs=98.4
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEE
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~ 121 (852)
.|+|+|++|++|+.+|. .+.+||||+|.+++.+. ||++++++.||+|||+|.|
T Consensus 1 ~~~V~v~~a~~L~~~~~--------------------------~~~~dPyv~v~~~~~~~-kT~v~~~t~nP~Wne~f~f 53 (116)
T cd08376 1 VVTIVLVEGKNLPPMDD--------------------------NGLSDPYVKFRLGNEKY-KSKVCSKTLNPQWLEQFDL 53 (116)
T ss_pred CEEEEEEEEECCCCCCC--------------------------CCCCCcEEEEEECCEeE-ecccccCCCCCceeEEEEE
Confidence 37999999999998875 45689999999988765 9999999999999999999
Q ss_pred eecCC-CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEee
Q 003057 122 PVAHS-AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (852)
Q Consensus 122 ~v~~~-~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~ 188 (852)
++... ...|.|+|+|++..+ +++||++.++|+++..+...+.|++|... .|+|++.+.|+
T Consensus 54 ~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-------~G~~~~~~~~~ 115 (116)
T cd08376 54 HLFDDQSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDG-------EGSLLLLLTLT 115 (116)
T ss_pred EecCCCCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccCC-------CcEEEEEEEec
Confidence 98766 478999999999876 89999999999999988889999999532 27888887763
No 39
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.74 E-value=8.6e-18 Score=155.38 Aligned_cols=99 Identities=10% Similarity=0.183 Sum_probs=84.5
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC---EEEeeeeeecCCCCCeee
Q 003057 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG---AVIGRTFVISNSESPVWM 116 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~---~~~~rT~vi~~t~nP~Wn 116 (852)
.|.|.|+|++|++|+ + .|++||||+|+|.. .+..+|+|+++|+||+||
T Consensus 13 ~~~L~V~vikA~~L~-~----------------------------~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfn 63 (118)
T cd08677 13 KAELHVNILEAENIS-V----------------------------DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWE 63 (118)
T ss_pred CCEEEEEEEEecCCC-C----------------------------CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccc
Confidence 489999999999998 2 24489999999942 234499999999999999
Q ss_pred eEEEEeecCCC---cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeec
Q 003057 117 QHFNVPVAHSA---AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPI 167 (852)
Q Consensus 117 E~F~~~v~~~~---~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 167 (852)
|+|.|+++... ..|.|+|+|+|+++ +++||++.+++.++..+...++|-+|
T Consensus 64 E~f~F~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 64 EELVFPLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred cEEEEeCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 99999987643 56999999999998 89999999999998767778889765
No 40
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.73 E-value=2.9e-17 Score=157.62 Aligned_cols=120 Identities=23% Similarity=0.325 Sum_probs=99.4
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCE------EEeeeeeecCCCCCee
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGA------VIGRTFVISNSESPVW 115 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~------~~~rT~vi~~t~nP~W 115 (852)
+|+|+|++|++|+.+|. .+.+||||+|.+.+. ...||++++++.||+|
T Consensus 1 ~L~v~Vi~a~~L~~~d~--------------------------~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~W 54 (133)
T cd04033 1 ILRVKVLAGIDLAKKDI--------------------------FGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKW 54 (133)
T ss_pred CEEEEEEEeECCCcccC--------------------------CCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcE
Confidence 48999999999998875 345899999999654 2459999999999999
Q ss_pred eeEEEEeecCCCcEEEEEEEecCCcC-CceeeeEEEeeeeecCCC------eeeeeeecccCCCCCCCCCceeeeeEEee
Q 003057 116 MQHFNVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGD------KIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (852)
Q Consensus 116 nE~F~~~v~~~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~------~~~~w~~L~~~~~~~~~~~g~I~l~l~f~ 188 (852)
||+|.|++......|.|.|+|++..+ +++||++.++++++..+. ..+.||+|....++ .+..|+|+++++|.
T Consensus 55 ne~f~f~~~~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~~G~l~~~~~~~ 133 (133)
T cd04033 55 NEEFFFRVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSK-SRVKGHLRLYMAYL 133 (133)
T ss_pred eeEEEEEEcCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCC-CcceeEEEEEEeeC
Confidence 99999999766678999999999887 889999999999988543 24689999654322 24569999999983
No 41
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.72 E-value=1.9e-17 Score=153.51 Aligned_cols=101 Identities=30% Similarity=0.445 Sum_probs=88.2
Q ss_pred EEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCee-eeEEEE
Q 003057 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVW-MQHFNV 121 (852)
Q Consensus 43 L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~W-nE~F~~ 121 (852)
|+|+|++|++|++++.. .+.+||||+|.+++.+ .||++++++.||+| ||+|.|
T Consensus 1 l~V~v~~a~~L~~~d~~-------------------------~~~~Dpyv~v~~~~~~-~kT~v~~~~~nP~W~ne~f~f 54 (110)
T cd08688 1 LKVRVVAARDLPVMDRS-------------------------SDLTDAFVEVKFGSTT-YKTDVVKKSLNPVWNSEWFRF 54 (110)
T ss_pred CEEEEEEEECCCccccC-------------------------CCCCCceEEEEECCee-EecceecCCCCCcccCcEEEE
Confidence 68999999999988741 3568999999998855 49999999999999 999999
Q ss_pred eecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecC---CCeeeeeeeccc
Q 003057 122 PVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS---GDKIEGAFPILN 169 (852)
Q Consensus 122 ~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~---g~~~~~w~~L~~ 169 (852)
++.+. .+.|.|+|+|++..+ +++||++.++++++.. +..++.||+|++
T Consensus 55 ~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 55 EVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred EcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 99764 368999999999887 7899999999999986 456899999976
No 42
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.72 E-value=5.3e-17 Score=154.52 Aligned_cols=106 Identities=32% Similarity=0.566 Sum_probs=93.4
Q ss_pred CCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCe
Q 003057 85 KITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDK 160 (852)
Q Consensus 85 ~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~ 160 (852)
.+.+||||+|.+++.+. ||++++++.||+|||+|.|++.+. .+.|.|.|||++..+ +++||++.++|+++..+..
T Consensus 12 ~g~~Dpyv~v~~~~~~~-kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~ 90 (127)
T cd08373 12 KGKGDRIAKVTFRGVKK-KTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGL 90 (127)
T ss_pred CCCCCCEEEEEECCEee-ecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCc
Confidence 35689999999988776 999999999999999999999764 478999999999876 7899999999999998888
Q ss_pred eeeeeecccCCCCCCCCCceeeeeEEeeccccc
Q 003057 161 IEGAFPILNSSRKPCKAGAVLSLSIQYTPVENM 193 (852)
Q Consensus 161 ~~~w~~L~~~~~~~~~~~g~I~l~l~f~p~~~~ 193 (852)
...|++|.+.++++ ..++|++.++|.|....
T Consensus 91 ~~~~~~L~~~~~~~--~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 91 LEVTEPLLDSNGRP--TGATISLEVSYQPPDGA 121 (127)
T ss_pred eEEEEeCcCCCCCc--ccEEEEEEEEEeCCCCc
Confidence 99999998777764 35899999999987664
No 43
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.72 E-value=5.2e-17 Score=156.22 Aligned_cols=114 Identities=21% Similarity=0.328 Sum_probs=96.3
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~ 120 (852)
|.|+|+|++|++|+++|. .+.+||||+|.++..+. ||++++++.||+|||+|.
T Consensus 15 G~L~V~Vi~A~~L~~~d~--------------------------~g~~DPYv~v~~~~~~~-kT~vi~~t~nP~Wne~f~ 67 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNS--------------------------NGKSDPYCEVSMGSQEH-KTKVVSDTLNPKWNSSMQ 67 (136)
T ss_pred EEEEEEEEEeeCCCCCCC--------------------------CCCcCcEEEEEECCEee-eccccCCCCCCccCceEE
Confidence 999999999999998875 45689999999988775 999999999999999999
Q ss_pred EeecCCC-cEEEEEEEecCCcC-CceeeeEEEeeeeecC-----CCeeeeeeecccCCCCCCCCCceeeeeEEe
Q 003057 121 VPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS-----GDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (852)
Q Consensus 121 ~~v~~~~-~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~-----g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f 187 (852)
|.+.+.. +.|.|.|||++..+ +++||++.++++++.. ......|+++. + +..|+|++.+.|
T Consensus 68 f~v~~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~---~---~~~g~i~l~~~~ 135 (136)
T cd08375 68 FFVKDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH---E---VPTGEVVVKLDL 135 (136)
T ss_pred EEecCccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc---c---ccceeEEEEEEe
Confidence 9997654 67999999999877 8899999999999885 33455676662 3 244899998876
No 44
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.72 E-value=1.2e-17 Score=157.00 Aligned_cols=102 Identities=21% Similarity=0.336 Sum_probs=87.8
Q ss_pred eceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCe
Q 003057 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPV 114 (852)
Q Consensus 39 l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~----~~~~rT~vi~~t~nP~ 114 (852)
-+|.|.|+|++|+||++++ .+.+||||+|+|.. ....||++++++.||+
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~---------------------------~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~ 62 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTN---------------------------SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPL 62 (119)
T ss_pred cCCEEEEEEEEEECCCCCC---------------------------CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCc
Confidence 4689999999999999876 34589999999953 3345999999999999
Q ss_pred eeeEEEEeecCCC--cEEEEEEEecCCcC--CceeeeEEEeeeeecCCCeeeeeeec
Q 003057 115 WMQHFNVPVAHSA--AEVHFVVKDNDFVG--SQIMGAVGIPVEKLCSGDKIEGAFPI 167 (852)
Q Consensus 115 WnE~F~~~v~~~~--~~l~~~V~D~d~~~--~~~iG~~~i~l~~l~~g~~~~~w~~L 167 (852)
|||+|.|++.+.. ..|.|+|||.+... +++||++.|||.++..+..++.||.|
T Consensus 63 ~nE~F~f~v~~~~~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 63 FHETFSFDVNERDYQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred cccEEEEEcChHHhCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 9999999987643 57899999988764 68999999999999988889999986
No 45
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.72 E-value=2.3e-17 Score=155.74 Aligned_cols=101 Identities=26% Similarity=0.390 Sum_probs=87.1
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCee
Q 003057 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVW 115 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~----~~~~rT~vi~~t~nP~W 115 (852)
.|.|.|+|++|++|+.+| .+.+||||+|++.. ....||++++++.||+|
T Consensus 12 ~~~L~V~Vi~A~~L~~~~---------------------------~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~w 64 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLD---------------------------GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTF 64 (122)
T ss_pred CCEEEEEEEEeeCCCCCC---------------------------CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCc
Confidence 589999999999999876 24589999999952 23459999999999999
Q ss_pred eeEEEEee-cC---CCcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeec
Q 003057 116 MQHFNVPV-AH---SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPI 167 (852)
Q Consensus 116 nE~F~~~v-~~---~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 167 (852)
||+|.|++ +. ....|.|+|||++..+ +++||++.|+|+++..++..+.||+|
T Consensus 65 nE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 65 NEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred ccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 99999987 32 2367999999999887 88999999999999988888999997
No 46
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.72 E-value=3.3e-17 Score=150.55 Aligned_cols=98 Identities=26% Similarity=0.506 Sum_probs=86.4
Q ss_pred EEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEe
Q 003057 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (852)
Q Consensus 43 L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~~ 122 (852)
|.|+|++|++|++.+. .+.+||||+|++++++. ||++++++.||+|||+|.|+
T Consensus 2 L~V~v~~A~~L~~~~~--------------------------~~~~dpyv~v~~~~~~~-kT~v~~~t~nP~Wne~f~f~ 54 (105)
T cd04050 2 LFVYLDSAKNLPLAKS--------------------------TKEPSPYVELTVGKTTQ-KSKVKERTNNPVWEEGFTFL 54 (105)
T ss_pred EEEEEeeecCCCCccc--------------------------CCCCCcEEEEEECCEEE-eCccccCCCCCcccceEEEE
Confidence 7899999999998764 45699999999998655 99999999999999999999
Q ss_pred ecCC-CcEEEEEEEecCCcCCceeeeEEEeeeeecCCC--eeeeeeeccc
Q 003057 123 VAHS-AAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGD--KIEGAFPILN 169 (852)
Q Consensus 123 v~~~-~~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~g~--~~~~w~~L~~ 169 (852)
+.++ .+.|.|+|+|.+. +++||++.++|.++..++ ..+.||+|.+
T Consensus 55 v~~~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 55 VRNPENQELEIEVKDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred eCCCCCCEEEEEEEECCC--CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 9875 4789999999876 889999999999998654 6789999954
No 47
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.72 E-value=5.6e-17 Score=154.38 Aligned_cols=121 Identities=22% Similarity=0.352 Sum_probs=99.0
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~ 120 (852)
|.|+|+|++|++|++.+.- ..+.+||||.|.+++.+. ||++++++.||+|||+|.
T Consensus 1 g~l~v~v~~a~~L~~~~~~------------------------~~~~~dPyv~v~~~~~~~-kT~~~~~t~~P~Wne~f~ 55 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRS------------------------GKGKSDPYAILSVGAQRF-KTQTIPNTLNPKWNYWCE 55 (128)
T ss_pred CEEEEEEEEeeCCCcccCC------------------------CCCCcCCeEEEEECCEEE-ecceecCCcCCccCCcEE
Confidence 7899999999999987641 034589999999988765 999999999999999999
Q ss_pred EeecC-CCcEEEEEEEecCCcC-CceeeeEEEeeeeecC---CCeeeeeeecccCC-CCCCCCCceeeeeEE
Q 003057 121 VPVAH-SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS---GDKIEGAFPILNSS-RKPCKAGAVLSLSIQ 186 (852)
Q Consensus 121 ~~v~~-~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~---g~~~~~w~~L~~~~-~~~~~~~g~I~l~l~ 186 (852)
|++.+ ..+.|.|+|+|++..+ +++||++.+++.++.. ....+.||+|.+.. ++.....|+|++.++
T Consensus 56 ~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 56 FPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFS 127 (128)
T ss_pred EEecCCCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEE
Confidence 99987 3578999999999875 8899999999999873 34467899997552 222235689988875
No 48
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=6.9e-17 Score=152.04 Aligned_cols=104 Identities=33% Similarity=0.543 Sum_probs=93.7
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~ 120 (852)
|.|+|+|++|++|++.+. .+.+||||+|.+++...++|++++++.||+|||+|.
T Consensus 1 g~L~V~Vi~a~~L~~~d~--------------------------~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~ 54 (120)
T cd04045 1 GVLRLHIRKANDLKNLEG--------------------------VGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLY 54 (120)
T ss_pred CeEEEEEEeeECCCCccC--------------------------CCCcCCEEEEEECCEEeeceeEECCCcCCccCceEE
Confidence 789999999999998875 356899999999887778999999999999999999
Q ss_pred EeecCCCcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCC
Q 003057 121 VPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSS 171 (852)
Q Consensus 121 ~~v~~~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~ 171 (852)
|++.+..+.|.|+|+|++..+ +++||++.++|.++..+ ..+.||.|++.+
T Consensus 55 ~~v~~~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 55 VPVTSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred EEecCCCCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 999887789999999999887 78999999999999966 678999998754
No 49
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.71 E-value=6.1e-17 Score=156.53 Aligned_cols=107 Identities=20% Similarity=0.302 Sum_probs=89.7
Q ss_pred eceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CE--EEeeeeeecCCCCCe
Q 003057 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GA--VIGRTFVISNSESPV 114 (852)
Q Consensus 39 l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~~--~~~rT~vi~~t~nP~ 114 (852)
-.|.|.|+|++|+||+.++.. .|.+||||+|+|- +. ...||++++++.||+
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~~~-------------------------~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPv 81 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKPGS-------------------------KVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPL 81 (146)
T ss_pred CCCEEEEEEEEeeCCCcccCC-------------------------CCCcCCeEEEEEECCCccccceeceecCCCCCCc
Confidence 458999999999999876421 4568999999993 32 245999999999999
Q ss_pred eeeEEEEeecCCCcEEEEEEE-ecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccC
Q 003057 115 WMQHFNVPVAHSAAEVHFVVK-DNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNS 170 (852)
Q Consensus 115 WnE~F~~~v~~~~~~l~~~V~-D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~ 170 (852)
|||+|.|++......|.|+|| |++..+ +++||++.|+|+++..+.....||+|...
T Consensus 82 fNE~F~f~v~l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 82 YQQQLVFDVSPTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred cCCeEEEEEcCCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 999999999855578999999 577665 78999999999999777788899999754
No 50
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.70 E-value=2e-16 Score=150.30 Aligned_cols=121 Identities=16% Similarity=0.244 Sum_probs=100.0
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEE
Q 003057 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHF 119 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F 119 (852)
+..|+|+|++|++|+..|. .|.+||||+|.+++.+. ||++++++.||+|||.|
T Consensus 2 ~~~~~V~v~~A~~L~~~d~--------------------------~g~~dPyv~v~~~~~~~-kT~v~~~t~nP~Wne~f 54 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDS--------------------------GGGADPYVIIKCEGESV-RSPVQKDTLSPEFDTQA 54 (126)
T ss_pred cEEEEEEEEeCcCCCCCCC--------------------------CCCcCccEEEEECCEEE-EeCccCCCCCCcccceE
Confidence 4789999999999998875 45699999999998876 99999999999999999
Q ss_pred EEeecCCCcEEEEEEEecCCcCCceeeeEEEeeeeecCCCeeeeeeecccCCCC-CCCCCceeeeeEEeec
Q 003057 120 NVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRK-PCKAGAVLSLSIQYTP 189 (852)
Q Consensus 120 ~~~v~~~~~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~-~~~~~g~I~l~l~f~p 189 (852)
.|.+....+.|.|+|||++..++++||.+.+++.++.. ....|++|.....+ ..+..|+|.+++.+.+
T Consensus 55 ~f~~~~~~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 55 IFYRKKPRSPIKIQVWNSNLLCDEFLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred EEEecCCCCEEEEEEEECCCCCCCceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 99988777899999999998889999999999987643 34577888532111 1135599999988765
No 51
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.70 E-value=9.3e-17 Score=149.93 Aligned_cols=97 Identities=19% Similarity=0.269 Sum_probs=86.0
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~ 120 (852)
|.|.|.|++|++|+.++ ..||||.|++++.+. +|+++++ .||+|||.|.
T Consensus 2 ~~L~V~Vv~Ar~L~~~~-----------------------------~~dPYV~Ik~g~~k~-kT~v~~~-~nP~WnE~F~ 50 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD-----------------------------KFNTYVTLKVQNVKS-TTIAVRG-SQPCWEQDFM 50 (127)
T ss_pred ceEEEEEEEeeCCCCCC-----------------------------CCCCeEEEEECCEEe-EeeECCC-CCCceeeEEE
Confidence 78999999999997543 369999999999876 9999987 4999999999
Q ss_pred EeecCCCcEEEEEEEecCCcCCceeeeEEEeeeeecCCCee--eeeeecc
Q 003057 121 VPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKI--EGAFPIL 168 (852)
Q Consensus 121 ~~v~~~~~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~g~~~--~~w~~L~ 168 (852)
|.+....+.|.|.|||++.++||+||++.|||+++..+... ..||+|.
T Consensus 51 F~~~~~~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 51 FEINRLDLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred EEEcCCCCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence 99988777799999999988899999999999999966554 7899995
No 52
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.70 E-value=8e-17 Score=152.63 Aligned_cols=103 Identities=20% Similarity=0.302 Sum_probs=90.4
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEE--CCEEEeeeeeecCCCCCeeee
Q 003057 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSI--CGAVIGRTFVISNSESPVWMQ 117 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l--~~~~~~rT~vi~~t~nP~WnE 117 (852)
.|.|.|+|++|++|+.+|. .+++||||+|.+ ++..++||++++++.||+|||
T Consensus 15 ~~~L~V~v~~a~~L~~~d~--------------------------~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne 68 (124)
T cd08387 15 MGILNVKLIQARNLQPRDF--------------------------SGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDE 68 (124)
T ss_pred CCEEEEEEEEeeCCCCCCC--------------------------CCCCCCeEEEEEecCCCCcEeCceEcCCCCCCccc
Confidence 3789999999999998875 456899999999 445567999999999999999
Q ss_pred EEEEeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecc
Q 003057 118 HFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (852)
Q Consensus 118 ~F~~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 168 (852)
+|.|++... ...|.|.|+|++..+ +++||++.|+|+++..+...+.||+|.
T Consensus 69 ~f~f~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 69 SFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred EEEEeCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 999998754 357999999999887 889999999999998777889999984
No 53
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.70 E-value=5.6e-17 Score=157.97 Aligned_cols=113 Identities=27% Similarity=0.390 Sum_probs=86.9
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEE
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~ 121 (852)
+|.|+|++|++|+.||.... .+++. . ....+.+.+||||+|.+++.++ ||++++++.||+|||+|.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~--~~~~~-------~---~~~~~~~~~DPYV~V~~~g~~~-kT~v~~~t~nPvWNE~f~f 67 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIM--ANVKK-------A---FLGEKKELVDPYVEVSFAGQKV-KTSVKKNSYNPEWNEQIVF 67 (151)
T ss_pred CeEEEEEEeCCCCccChhhh--cccee-------c---cccCCCCCcCcEEEEEECCEee-ecceEcCCCCCCcceEEEE
Confidence 48999999999999985321 00000 0 0112356789999999999887 9999999999999999999
Q ss_pred eecC--CCcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecc
Q 003057 122 PVAH--SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (852)
Q Consensus 122 ~v~~--~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 168 (852)
++.. ..+.|.|+|+|+|..+ +++||++.|+|+++... ..++|+|++
T Consensus 68 ~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~-~~~~~lp~~ 116 (151)
T cd04018 68 PEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNS-GDEGFLPTF 116 (151)
T ss_pred EeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccC-CccccCCcc
Confidence 8643 3478999999999885 89999999999998853 344455443
No 54
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.69 E-value=1.1e-16 Score=151.75 Aligned_cols=103 Identities=29% Similarity=0.348 Sum_probs=89.8
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeecCCCCCeeee
Q 003057 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAVIGRTFVISNSESPVWMQ 117 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~~~~~rT~vi~~t~nP~WnE 117 (852)
.|.|+|+|++|++|+.+|. .+.+||||+|.+. ..+..||++++++.||+|||
T Consensus 15 ~~~L~V~v~~a~~L~~~d~--------------------------~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne 68 (124)
T cd08385 15 SNQLTVGIIQAADLPAMDM--------------------------GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNE 68 (124)
T ss_pred CCEEEEEEEEeeCCCCccC--------------------------CCCCCCEEEEEEEcCCCCceecccCcCCCCCceee
Confidence 3899999999999998875 4558999999994 33456999999999999999
Q ss_pred EEEEeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecc
Q 003057 118 HFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (852)
Q Consensus 118 ~F~~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 168 (852)
+|.|++... ...|.|.|+|++..+ +++||++.++|+++..+...+.|++|.
T Consensus 69 ~f~f~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 69 TFTFKVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred eEEEeCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 999998653 357999999999887 789999999999998888899999984
No 55
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.69 E-value=9e-17 Score=148.21 Aligned_cols=96 Identities=21% Similarity=0.342 Sum_probs=81.4
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~ 120 (852)
|.|.|+|++|++|+..|..++ ..+++||||+|++++.+. ||++++++.||+|||.|.
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~----------------------~~~~~DPYv~v~~~~~~~-kT~v~~~t~nPvWne~f~ 57 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTR----------------------TGFDMDPFVIISFGRRVF-RTSWRRHTLNPVFNERLA 57 (108)
T ss_pred CEEEEEEEeeeCCCCccccCC----------------------CCCccCceEEEEECCEeE-eeeeecCCCCCcccceEE
Confidence 789999999999998774221 023589999999987665 999999999999999999
Q ss_pred EeecCCC--cEEEEEEEecCCcC-CceeeeEEEeeeeecCCC
Q 003057 121 VPVAHSA--AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGD 159 (852)
Q Consensus 121 ~~v~~~~--~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~ 159 (852)
|++.+.. ..|.|.|||++..+ +++||++.++|++|..+.
T Consensus 58 f~v~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 58 FEVYPHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred EEEeCccCCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 9986543 47999999999887 899999999999998654
No 56
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.69 E-value=1.2e-16 Score=151.48 Aligned_cols=103 Identities=26% Similarity=0.431 Sum_probs=88.1
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--C--EEEeeeeeecCCCCCee
Q 003057 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--G--AVIGRTFVISNSESPVW 115 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~--~~~~rT~vi~~t~nP~W 115 (852)
.|.|.|+|++|++|+.++.. .+.+||||+|.+. . ....||++++++.||+|
T Consensus 14 ~~~L~V~Vi~a~~L~~~~~~-------------------------~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~w 68 (125)
T cd04029 14 TQSLNVHVKECRNLAYGDEA-------------------------KKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVY 68 (125)
T ss_pred CCeEEEEEEEecCCCccCCC-------------------------CCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcc
Confidence 47899999999999977631 3568999999994 2 23459999999999999
Q ss_pred eeEEEEeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeec
Q 003057 116 MQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPI 167 (852)
Q Consensus 116 nE~F~~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 167 (852)
||+|.|++... ...|.|+|||++..+ +++||++.|+|.++......+.|++|
T Consensus 69 nE~f~f~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 69 NETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred cceEEEECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 99999998653 357999999999887 78999999999999988889999998
No 57
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.69 E-value=3.9e-17 Score=156.74 Aligned_cols=114 Identities=22% Similarity=0.223 Sum_probs=94.3
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--E--EEeeeeeecCCCCCee
Q 003057 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--A--VIGRTFVISNSESPVW 115 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~--~--~~~rT~vi~~t~nP~W 115 (852)
.|.|.|+|++|+||+.+|.-. .+.+||||+|+|.. . +..||++++++.||+|
T Consensus 14 ~~~L~V~V~karnL~~~d~~~------------------------~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvf 69 (138)
T cd08407 14 ANRLLVVVIKAKNLHSDQLKL------------------------LLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVW 69 (138)
T ss_pred CCeEEEEEEEecCCCccccCC------------------------CCCCCeEEEEEEEcCCcccceeccceeeCCCCCcc
Confidence 488999999999999887310 23489999999943 2 2348999999999999
Q ss_pred eeEEEEeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCc
Q 003057 116 MQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGA 179 (852)
Q Consensus 116 nE~F~~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g 179 (852)
||+|.|.+++. ...|.|+|+|+|..+ +++||++.+++.. +|...++|.+++...++++..+-
T Consensus 70 NE~f~F~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~va~WH 135 (138)
T cd08407 70 NEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQIAMWH 135 (138)
T ss_pred ccEEEEECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCchhEEE
Confidence 99999999764 367999999999988 8899999999974 68888999999988888764443
No 58
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.69 E-value=8.7e-17 Score=152.58 Aligned_cols=113 Identities=21% Similarity=0.293 Sum_probs=95.3
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeec-CCCCCeeeeEEE
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVIS-NSESPVWMQHFN 120 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~-~t~nP~WnE~F~ 120 (852)
+|+|+|++|++|++.+. .++.||||+|++++....+|+++. ++.||+|||.|.
T Consensus 1 ~L~V~V~sA~~L~~~~~--------------------------~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~ 54 (125)
T cd04051 1 TLEITIISAEDLKNVNL--------------------------FGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLR 54 (125)
T ss_pred CEEEEEEEcccCCCCCc--------------------------ccCCceEEEEEECCCcccccccccCCCCCCCCCCEEE
Confidence 58999999999998775 345899999999883344999986 489999999999
Q ss_pred EeecCC-----CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCe-----eeeeeecccCCCCCCCCCceeee
Q 003057 121 VPVAHS-----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDK-----IEGAFPILNSSRKPCKAGAVLSL 183 (852)
Q Consensus 121 ~~v~~~-----~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~-----~~~w~~L~~~~~~~~~~~g~I~l 183 (852)
|.+.+. ...|.|.|+|++..+ +++||++.|+|.++..+.. ...||+|.+++|++. |.|+|
T Consensus 55 f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~---G~~~~ 125 (125)
T cd04051 55 FPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQ---GVLNF 125 (125)
T ss_pred EEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcC---eEEeC
Confidence 999877 578999999998855 8899999999999996554 368999998888654 88765
No 59
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.69 E-value=8.6e-17 Score=152.62 Aligned_cols=102 Identities=21% Similarity=0.301 Sum_probs=87.1
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--C--EEEeeeeeecCCCCCeee
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--G--AVIGRTFVISNSESPVWM 116 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~--~~~~rT~vi~~t~nP~Wn 116 (852)
+.|.|+|++|++|+.+|.. .|.+||||+|.+. . ....||++++++.||+||
T Consensus 15 ~~L~V~vi~a~~L~~~d~~-------------------------~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~n 69 (125)
T cd08393 15 RELHVHVIQCQDLAAADPK-------------------------KQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFN 69 (125)
T ss_pred CEEEEEEEEeCCCCCcCCC-------------------------CCCCCcEEEEEEEcCCCccccccCccCcCCCCCccC
Confidence 6899999999999988741 2668999999993 2 223599999999999999
Q ss_pred eEEEEeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeec
Q 003057 117 QHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPI 167 (852)
Q Consensus 117 E~F~~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 167 (852)
|+|.|++... ...|.|+|||++..+ +++||++.|+|.++..+.....||+|
T Consensus 70 E~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 70 ETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred ceEEEECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 9999998643 267999999999887 78999999999999877777899998
No 60
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.68 E-value=1.2e-16 Score=148.31 Aligned_cols=100 Identities=26% Similarity=0.335 Sum_probs=84.8
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeecCCCCCeeeeE
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--AVIGRTFVISNSESPVWMQH 118 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~--~~~~rT~vi~~t~nP~WnE~ 118 (852)
|+|+|+|++|++|+++|.. .+++||||+|.+.. ....||++++++.||+|||+
T Consensus 1 G~L~V~v~~a~~L~~~d~~-------------------------~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~ 55 (111)
T cd04041 1 GVLVVTIHRATDLPKADFG-------------------------TGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEET 55 (111)
T ss_pred CEEEEEEEEeeCCCcccCC-------------------------CCCCCccEEEEEccCCCccEeeeeECCCCCCcccee
Confidence 7899999999999988752 15689999999943 34569999999999999999
Q ss_pred EEEeecCC----CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecc
Q 003057 119 FNVPVAHS----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (852)
Q Consensus 119 F~~~v~~~----~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 168 (852)
|.|.+... ...|.|+|||++..+ +++||++.+++++|.. ..+|+++.
T Consensus 56 f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~---~~~~~~~~ 107 (111)
T cd04041 56 WFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIE---DRNWMGRR 107 (111)
T ss_pred EEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence 99987653 368999999999887 8999999999999983 35798873
No 61
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.67 E-value=8.5e-17 Score=154.42 Aligned_cols=110 Identities=25% Similarity=0.278 Sum_probs=92.0
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEE--EeeeeeecCCCCCeee
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAV--IGRTFVISNSESPVWM 116 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~~~--~~rT~vi~~t~nP~Wn 116 (852)
+.|.|+|++|++|+.+|. .+.+||||+|.|. +.+ ..||+|++++.||+||
T Consensus 15 ~~L~V~Vi~A~nL~~~~~--------------------------~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~n 68 (136)
T cd08406 15 ERLTVVVVKARNLVWDNG--------------------------KTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFN 68 (136)
T ss_pred CEEEEEEEEeeCCCCccC--------------------------CCCCCeEEEEEEEeCCccccccCCccccCCCCCeec
Confidence 689999999999998774 5679999999993 222 3489999999999999
Q ss_pred eEEEEeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCC
Q 003057 117 QHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAG 178 (852)
Q Consensus 117 E~F~~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~ 178 (852)
|+|.|.++.. ...|+|+|+|+|..+ +++||++.|+.. ..|...++|.+++...++++..+
T Consensus 69 E~f~F~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~~~v~~W 132 (136)
T cd08406 69 EAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLRKPVAMW 132 (136)
T ss_pred eeEEEECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCCCeeeEe
Confidence 9999998753 367999999999877 889999999775 46788899999998888776443
No 62
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.67 E-value=1.9e-16 Score=149.44 Aligned_cols=102 Identities=20% Similarity=0.317 Sum_probs=86.4
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--C---EEEeeeeeecCCCCCe
Q 003057 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--G---AVIGRTFVISNSESPV 114 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~---~~~~rT~vi~~t~nP~ 114 (852)
.|.|.|+|++|+||++++. .+.+||||+|+|- . ....||++++++.||+
T Consensus 13 ~~~L~V~V~~arnL~~~~~--------------------------~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPv 66 (124)
T cd08680 13 DSSLVISVEQLRNLSALSI--------------------------PENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPV 66 (124)
T ss_pred CCEEEEEEeEecCCccccc--------------------------CCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCc
Confidence 3789999999999998764 5668999999992 2 2345999999999999
Q ss_pred eeeEEEEeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeec-CCCeeeeeeec
Q 003057 115 WMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLC-SGDKIEGAFPI 167 (852)
Q Consensus 115 WnE~F~~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~-~g~~~~~w~~L 167 (852)
|||+|.|+++.. ...|.|+|||.+..+ +++||++.|+|+++. ++....+||+|
T Consensus 67 fnE~F~f~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 67 FNEVFRVPISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred cccEEEEECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 999999998764 368999999999887 889999999999995 44567889986
No 63
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.67 E-value=3.5e-16 Score=152.09 Aligned_cols=103 Identities=21% Similarity=0.287 Sum_probs=85.2
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCE----EEeeeeeecCCCCCeeee
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGA----VIGRTFVISNSESPVWMQ 117 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~----~~~rT~vi~~t~nP~WnE 117 (852)
.|.|+|++|++|+. . .|++||||+|.+... ...||++++++.||+|||
T Consensus 1 kL~V~Vi~ArnL~~--~--------------------------~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE 52 (148)
T cd04010 1 KLSVRVIECSDLAL--K--------------------------NGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDE 52 (148)
T ss_pred CEEEEEEeCcCCCC--C--------------------------CCCCCceEEEEEeCCcccCcccCCccEeCCCCCccce
Confidence 38999999999985 1 567999999999652 234999999999999999
Q ss_pred EEEEeec---------------CCC-cEEEEEEEecCCcC-CceeeeEEEeeeeecCC-CeeeeeeecccCCC
Q 003057 118 HFNVPVA---------------HSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSG-DKIEGAFPILNSSR 172 (852)
Q Consensus 118 ~F~~~v~---------------~~~-~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g-~~~~~w~~L~~~~~ 172 (852)
+|.|++. +.. ..|.|.|||++..+ +++||++.|++.++..+ ...+.||+|.....
T Consensus 53 ~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~ 125 (148)
T cd04010 53 AFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREE 125 (148)
T ss_pred EEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCccc
Confidence 9999984 112 56899999998876 88999999999999976 56789999965543
No 64
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.67 E-value=4.6e-16 Score=147.19 Aligned_cols=116 Identities=17% Similarity=0.254 Sum_probs=92.2
Q ss_pred EEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEe
Q 003057 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (852)
Q Consensus 43 L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~~ 122 (852)
|+|+|++|++|+.++. .+.+||||+|.+++..+.||++++++.||+|||+|.|+
T Consensus 2 l~v~v~~A~~L~~~~~--------------------------~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~ 55 (123)
T cd08382 2 VRLTVLCADGLAKRDL--------------------------FRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLT 55 (123)
T ss_pred eEEEEEEecCCCccCC--------------------------CCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEE
Confidence 7999999999998875 34589999999976666799999999999999999999
Q ss_pred ecCCCcEEEEEEEecCCcC---CceeeeEEEeeeeecCCC-eeeeeeecccCCCC-CCCCCceeeeeE
Q 003057 123 VAHSAAEVHFVVKDNDFVG---SQIMGAVGIPVEKLCSGD-KIEGAFPILNSSRK-PCKAGAVLSLSI 185 (852)
Q Consensus 123 v~~~~~~l~~~V~D~d~~~---~~~iG~~~i~l~~l~~g~-~~~~w~~L~~~~~~-~~~~~g~I~l~l 185 (852)
+.. .+.|.|+|||++..+ +++||++.++++++.... ....|++|...... .....|+|.+.+
T Consensus 56 ~~~-~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 56 VGP-SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred eCC-CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 965 678999999998775 369999999999987433 33679999544321 112346666543
No 65
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.66 E-value=8.4e-16 Score=146.00 Aligned_cols=113 Identities=24% Similarity=0.290 Sum_probs=93.8
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeecCCCCCeeeeEE
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--AVIGRTFVISNSESPVWMQHF 119 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~--~~~~rT~vi~~t~nP~WnE~F 119 (852)
.|+|+|++|++|++++. .+.+||||+|.+.+ ...+||++++++.||+|||+|
T Consensus 2 ~~~V~v~~a~~L~~~~~--------------------------~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f 55 (126)
T cd04043 2 LFTIRIVRAENLKADSS--------------------------NGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEF 55 (126)
T ss_pred EEEEEEEEeECCCCCCC--------------------------CCCCCceEEEEECCCCeeeecccEecCCCCCcccceE
Confidence 58999999999998875 45689999999864 456799999999999999999
Q ss_pred EEeecCC-CcEEEEEEEecCCcC-CceeeeEEEeeeeecC---CCeeeeeeecccCCCCCCCCCceeeeeEEee
Q 003057 120 NVPVAHS-AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS---GDKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (852)
Q Consensus 120 ~~~v~~~-~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~---g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~ 188 (852)
.|++.+. ...|.|+|+|++..+ +++||++.++|+++.. +...+.|++|. + .|++++.+.+.
T Consensus 56 ~f~i~~~~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~-~-------~g~i~l~~~~~ 121 (126)
T cd04043 56 ELEVPAGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD-T-------QGRLLLRVSME 121 (126)
T ss_pred EEEcCCCCCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC-C-------CCeEEEEEEEe
Confidence 9999874 478999999999876 8899999999987653 44678899994 2 26777777754
No 66
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.66 E-value=3.2e-16 Score=145.50 Aligned_cols=101 Identities=22% Similarity=0.354 Sum_probs=87.8
Q ss_pred CCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEeecCCC-cEEEEEEEecCCcCCceeeeEEEeeeeecC-CCee
Q 003057 84 DKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHSA-AEVHFVVKDNDFVGSQIMGAVGIPVEKLCS-GDKI 161 (852)
Q Consensus 84 ~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~~v~~~~-~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~-g~~~ 161 (852)
+.|.+||||+|.++++..+||++++++.||+|||+|.|.+.+.. +.|.|.|+|.+..++++||++.++|+++.. +...
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~~ 88 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSVG 88 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhcc
Confidence 47789999999999888889999999999999999999998754 779999999988888999999999999864 4456
Q ss_pred eeeeecccCCCCCCCCCceeeeeEEeecc
Q 003057 162 EGAFPILNSSRKPCKAGAVLSLSIQYTPV 190 (852)
Q Consensus 162 ~~w~~L~~~~~~~~~~~g~I~l~l~f~p~ 190 (852)
+.||+|.+ + ..|+|+++++|.|+
T Consensus 89 ~~w~~L~~---~---~~G~i~~~~~~~p~ 111 (111)
T cd04052 89 QQWFPLSG---N---GQGRIRISALWKPV 111 (111)
T ss_pred ceeEECCC---C---CCCEEEEEEEEecC
Confidence 89999954 2 34899999999985
No 67
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.66 E-value=1.1e-15 Score=147.12 Aligned_cols=118 Identities=25% Similarity=0.293 Sum_probs=95.6
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEE
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~ 121 (852)
.|+|+|++|++|+.+|. .+.+||||+|.+++.+. ||++++++.||+|||+|.|
T Consensus 2 ~l~v~V~~a~~L~~~d~--------------------------~g~~dpyv~v~~~~~~~-kT~v~~~t~nP~Wne~~~f 54 (135)
T cd04017 2 QLRAYIYQARDLLAADK--------------------------SGLSDPFARVSFLNQSQ-ETEVIKETLSPTWDQTLIF 54 (135)
T ss_pred EEEEEEEEeecCcCCCC--------------------------CCCCCCEEEEEECCeee-EeeeEcCCCCCccCcEEEE
Confidence 48999999999998885 45689999999988766 9999999999999999998
Q ss_pred eecCC----------CcEEEEEEEecCCcC-CceeeeEEE-eeeeecC---CCeeeeeeecccCCCCCCCCCceeeeeEE
Q 003057 122 PVAHS----------AAEVHFVVKDNDFVG-SQIMGAVGI-PVEKLCS---GDKIEGAFPILNSSRKPCKAGAVLSLSIQ 186 (852)
Q Consensus 122 ~v~~~----------~~~l~~~V~D~d~~~-~~~iG~~~i-~l~~l~~---g~~~~~w~~L~~~~~~~~~~~g~I~l~l~ 186 (852)
++... ...+.|+|+|++..+ +++||++.+ |+..+.. +.....|++|.. .+. ..|+|.+.++
T Consensus 55 ~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~-~~~---~~Geil~~~~ 130 (135)
T cd04017 55 DEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK-GGQ---SAGELLAAFE 130 (135)
T ss_pred eeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec-CCC---chhheeEEeE
Confidence 75321 246899999999887 789999997 5555543 356779999953 333 4589999999
Q ss_pred eecc
Q 003057 187 YTPV 190 (852)
Q Consensus 187 f~p~ 190 (852)
+.++
T Consensus 131 ~~~~ 134 (135)
T cd04017 131 LIEV 134 (135)
T ss_pred EEEe
Confidence 8775
No 68
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.66 E-value=1.7e-16 Score=152.30 Aligned_cols=107 Identities=21% Similarity=0.299 Sum_probs=91.6
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeee
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVWM 116 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~----~~~~rT~vi~~t~nP~Wn 116 (852)
|.|.|+|++|++|+++|. .+.+||||+|.+.. ....||++++++.||+||
T Consensus 13 ~~L~V~Vi~a~~L~~~d~--------------------------~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wn 66 (133)
T cd08384 13 RGLIVGIIRCVNLAAMDA--------------------------NGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFN 66 (133)
T ss_pred CEEEEEEEEEcCCCCcCC--------------------------CCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcc
Confidence 899999999999998875 45689999999942 335699999999999999
Q ss_pred eEEEEeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCC
Q 003057 117 QHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (852)
Q Consensus 117 E~F~~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~ 175 (852)
|+|.|++... ...|.|+|+|++..+ +++||++.+++.. .|...++|++++...+++.
T Consensus 67 e~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~~ 127 (133)
T cd08384 67 EEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKKI 127 (133)
T ss_pred cEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCCh
Confidence 9999998753 357999999999876 7899999999974 5677889999988777765
No 69
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.66 E-value=6.7e-16 Score=146.94 Aligned_cols=114 Identities=27% Similarity=0.370 Sum_probs=93.7
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEE
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~ 121 (852)
.|+|+|++|++|+.+|. .+.+||||+|.+++... ||+++.++.||+|||+|.|
T Consensus 2 ~L~V~vi~a~~L~~~d~--------------------------~g~~DPyv~v~~~~~~~-kT~~v~~t~~P~Wne~f~f 54 (127)
T cd04027 2 KISITVVCAQGLIAKDK--------------------------TGTSDPYVTVQVGKTKK-RTKTIPQNLNPVWNEKFHF 54 (127)
T ss_pred eEEEEEEECcCCcCCCC--------------------------CCCcCcEEEEEECCEee-ecceecCCCCCccceEEEE
Confidence 68999999999998875 45589999999987654 9999999999999999999
Q ss_pred eecCCCcEEEEEEEecCCc------------CCceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeE
Q 003057 122 PVAHSAAEVHFVVKDNDFV------------GSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSI 185 (852)
Q Consensus 122 ~v~~~~~~l~~~V~D~d~~------------~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l 185 (852)
++......|.|.|||+|.. ++++||++.+++.++. ...+.|++|....++. +..|+|.+++
T Consensus 55 ~~~~~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 55 ECHNSSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred EecCCCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCC-cEeEEEEEEC
Confidence 9976667899999998852 4789999999999875 3356899997544332 3568887753
No 70
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.66 E-value=6.3e-16 Score=144.35 Aligned_cols=105 Identities=30% Similarity=0.428 Sum_probs=92.1
Q ss_pred EEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEe
Q 003057 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (852)
Q Consensus 43 L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~~ 122 (852)
|+|+|++|++|++++. .+.+||||+|.+.+..+++|+++.++.||+|||+|.++
T Consensus 1 l~v~vi~a~~L~~~~~--------------------------~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~ 54 (115)
T cd04040 1 LTVDVISAENLPSADR--------------------------NGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVP 54 (115)
T ss_pred CEEEEEeeeCCCCCCC--------------------------CCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEE
Confidence 6899999999998764 34589999999987777899999999999999999999
Q ss_pred ecCC-CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCC
Q 003057 123 VAHS-AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRK 173 (852)
Q Consensus 123 v~~~-~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~ 173 (852)
+... .+.+.|.|+|++..+ +++||++.+++.++..+...+.|++|....+.
T Consensus 55 ~~~~~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~ 107 (115)
T cd04040 55 VPSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGG 107 (115)
T ss_pred eccCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCCc
Confidence 9764 478999999998876 88999999999999988889999999655443
No 71
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.65 E-value=5.7e-16 Score=146.83 Aligned_cols=100 Identities=25% Similarity=0.341 Sum_probs=84.0
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeee
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVWM 116 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~----~~~~rT~vi~~t~nP~Wn 116 (852)
|.|.|+|++|++|+.++. .+.+||||+|.+.. ....||++++++.||+||
T Consensus 16 ~~L~V~vi~a~~L~~~~~--------------------------~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wn 69 (125)
T cd04031 16 SQLIVTVLQARDLPPRDD--------------------------GSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWN 69 (125)
T ss_pred CEEEEEEEEecCCCCcCC--------------------------CCCCCCEEEEEEccCCCccccccccccCCCCCCccc
Confidence 789999999999998875 45589999999964 345699999999999999
Q ss_pred eEEEEeecC----CCcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeec
Q 003057 117 QHFNVPVAH----SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPI 167 (852)
Q Consensus 117 E~F~~~v~~----~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 167 (852)
|+|.|++.. ....|.|+|+|++..+ +++||++.++|++.. ....+.||+|
T Consensus 70 e~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L 124 (125)
T cd04031 70 QTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPL 124 (125)
T ss_pred cEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEEC
Confidence 999999654 2468999999999877 789999999999843 3335689998
No 72
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.65 E-value=4.6e-16 Score=147.99 Aligned_cols=102 Identities=22% Similarity=0.267 Sum_probs=85.7
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeee
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVWM 116 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~----~~~~rT~vi~~t~nP~Wn 116 (852)
+.|.|+|++|+||+.+|.. .|.+||||+|.|.. ....||++++++.||+||
T Consensus 15 ~~L~V~V~~a~nL~~~d~~-------------------------~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfN 69 (128)
T cd08392 15 SCLEITIKACRNLAYGDEK-------------------------KKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFN 69 (128)
T ss_pred CEEEEEEEecCCCCccCCC-------------------------CCCCCeEEEEEEEeCCcccceeecccccCCCCCccc
Confidence 7899999999999987641 26689999999942 223499999999999999
Q ss_pred eEEEEeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecC---CCeeeeeeec
Q 003057 117 QHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS---GDKIEGAFPI 167 (852)
Q Consensus 117 E~F~~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~---g~~~~~w~~L 167 (852)
|+|.|++... ...|.|+|||.+..+ +++||++.|+|+++.. +.....||+|
T Consensus 70 E~F~f~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 70 ETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred eEEEEEcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 9999998653 368999999999876 7899999999999863 3467899998
No 73
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.65 E-value=3.3e-16 Score=150.89 Aligned_cols=108 Identities=26% Similarity=0.385 Sum_probs=91.5
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEE--EeeeeeecCCCCCee
Q 003057 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAV--IGRTFVISNSESPVW 115 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~~~--~~rT~vi~~t~nP~W 115 (852)
.+.|.|+|++|++|+.+|. .+++||||+|.+. +.+ ..||++++++.||+|
T Consensus 14 ~~~L~V~vi~a~~L~~~d~--------------------------~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w 67 (136)
T cd08404 14 TNRLTVVVLKARHLPKMDV--------------------------SGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVF 67 (136)
T ss_pred CCeEEEEEEEeeCCCcccc--------------------------CCCCCeEEEEEEEcCCceeeeEcCccccCCCCCcc
Confidence 4789999999999998875 4568999999993 332 358999999999999
Q ss_pred eeEEEEeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCC
Q 003057 116 MQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (852)
Q Consensus 116 nE~F~~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~ 175 (852)
||+|.|++... ...|.|+|+|++..+ +++||++.+++++ .+...+.|++|.+..|++.
T Consensus 68 ~e~F~f~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~i 129 (136)
T cd08404 68 NESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQI 129 (136)
T ss_pred CceEEEECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCee
Confidence 99999998642 356899999999887 8899999999987 4677899999988778766
No 74
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.65 E-value=3.9e-16 Score=147.87 Aligned_cols=108 Identities=19% Similarity=0.298 Sum_probs=87.4
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--C--EEEeeeeeecCCC-CCee
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--G--AVIGRTFVISNSE-SPVW 115 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~--~~~~rT~vi~~t~-nP~W 115 (852)
|.|.|+|++|+||++++. .+.+||||+|+|- + .+..||++++++. ||+|
T Consensus 14 ~rLtV~VikarnL~~~~~--------------------------~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~f 67 (135)
T cd08692 14 SRIQLQILEAQNLPSSST--------------------------PLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKW 67 (135)
T ss_pred CeEEEEEEEccCCCcccC--------------------------CCCCCcEEEEEEEECCCcceeecCccEECCCCCcee
Confidence 889999999999998742 3457999999992 2 2345899999985 6999
Q ss_pred eeEEEEeecCCC--cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCC
Q 003057 116 MQHFNVPVAHSA--AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (852)
Q Consensus 116 nE~F~~~v~~~~--~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~ 175 (852)
||+|.|+++... ..+.++|+|++..+ +++||++.++.++. .+...++|.+++...++++
T Consensus 68 NEsF~Fdv~~~~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~i 129 (135)
T cd08692 68 GETMIFPVTQQEHGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKVV 129 (135)
T ss_pred cceEEEeCCchhheeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCee
Confidence 999999987654 45777888888776 89999999999763 3556899999998878776
No 75
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.65 E-value=2.3e-16 Score=152.08 Aligned_cols=113 Identities=27% Similarity=0.404 Sum_probs=93.6
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CE--EEeeeeeecCCCCCee
Q 003057 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GA--VIGRTFVISNSESPVW 115 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~~--~~~rT~vi~~t~nP~W 115 (852)
+|.|+|+|++|++|+++|. .+.+||||+|.+. +. ...||++++++.||+|
T Consensus 14 ~~~l~V~Vi~a~~L~~~d~--------------------------~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~w 67 (136)
T cd08402 14 AGKLTVVILEAKNLKKMDV--------------------------GGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYY 67 (136)
T ss_pred CCeEEEEEEEeeCCCcccC--------------------------CCCCCCeEEEEEEECCcccceeeccceeCCCCCcc
Confidence 4899999999999998875 4568999999994 22 3458999999999999
Q ss_pred eeEEEEeecCCC---cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCce
Q 003057 116 MQHFNVPVAHSA---AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAV 180 (852)
Q Consensus 116 nE~F~~~v~~~~---~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~ 180 (852)
||+|.|++.... ..|.|+|+|++..+ +++||++.|++.. .|...++|++|+...+++...+.+
T Consensus 68 ne~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~~~~~wh~ 134 (136)
T cd08402 68 NESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRRPIAQWHT 134 (136)
T ss_pred cceEEEECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCCeeeEEEE
Confidence 999999986432 47999999999887 7899999999974 467789999999887776644433
No 76
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.65 E-value=7.1e-16 Score=146.67 Aligned_cols=101 Identities=23% Similarity=0.352 Sum_probs=87.3
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeee
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVWM 116 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~----~~~~rT~vi~~t~nP~Wn 116 (852)
+.|+|+|++|++|++++. .+.+||||+|.+.. ....||++++++.||+||
T Consensus 16 ~~L~V~vi~a~~L~~~~~--------------------------~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wn 69 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDS--------------------------SDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFD 69 (127)
T ss_pred CEEEEEEEEEECCCCccC--------------------------CCCCCceEEEEEEcCCCCCceEecccccCCCCCEEC
Confidence 789999999999998875 35689999999952 345699999999999999
Q ss_pred eEEEEeecCC---CcEEEEEEEecCCc---CCceeeeEEEeeeeecCCCeeeeeeec
Q 003057 117 QHFNVPVAHS---AAEVHFVVKDNDFV---GSQIMGAVGIPVEKLCSGDKIEGAFPI 167 (852)
Q Consensus 117 E~F~~~v~~~---~~~l~~~V~D~d~~---~~~~iG~~~i~l~~l~~g~~~~~w~~L 167 (852)
|+|.|++... ...|.|+|+|.+.. .+++||++.++|.++..+...+.||+|
T Consensus 70 e~f~f~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 70 ETFEFPVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred eEEEEecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 9999998543 26799999998874 488999999999999888888999998
No 77
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.65 E-value=7.8e-16 Score=145.84 Aligned_cols=101 Identities=21% Similarity=0.366 Sum_probs=89.6
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecC-CCCCeeeeEE
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISN-SESPVWMQHF 119 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~-t~nP~WnE~F 119 (852)
|.|+|+|++|++|++++. .+.+||||+|++++... +|+++.+ +.||+|||+|
T Consensus 1 g~L~V~V~~A~~L~~~~~--------------------------~~~~dpyv~v~~~~~~~-~T~~~~~~t~nP~Wne~f 53 (124)
T cd04049 1 GTLEVLLISAKGLQDTDF--------------------------LGKIDPYVIIQCRTQER-KSKVAKGDGRNPEWNEKF 53 (124)
T ss_pred CeEEEEEEecCCCCCCCC--------------------------CCCcCceEEEEECCEee-eeeEcCCCCCCCcccceE
Confidence 789999999999998875 34589999999988766 9999885 8999999999
Q ss_pred EEeecCC----CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecc
Q 003057 120 NVPVAHS----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (852)
Q Consensus 120 ~~~v~~~----~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 168 (852)
.|.+... ...|.|.|+|.+..+ +++||++.+++.++..++..+.|++|.
T Consensus 54 ~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~ 107 (124)
T cd04049 54 KFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELV 107 (124)
T ss_pred EEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEee
Confidence 9999876 468999999998876 889999999999999888889999994
No 78
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.64 E-value=1.1e-15 Score=141.97 Aligned_cols=97 Identities=19% Similarity=0.247 Sum_probs=84.3
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEE
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~ 121 (852)
.|+|+|++|++|++ +++||||+|.+++++. ||++++++.||+|||+|.|
T Consensus 5 ~l~V~v~~a~~L~~------------------------------~~~dpyv~v~~~~~~~-kT~~~~~t~nP~wne~f~f 53 (111)
T cd04011 5 QVRVRVIEARQLVG------------------------------GNIDPVVKVEVGGQKK-YTSVKKGTNCPFYNEYFFF 53 (111)
T ss_pred EEEEEEEEcccCCC------------------------------CCCCCEEEEEECCEee-eeeEEeccCCCccccEEEE
Confidence 68999999999981 3489999999998876 9999999999999999999
Q ss_pred eecCCC-----cEEEEEEEecCCcC-CceeeeEEEeeeeecCC---Ceeeeeeeccc
Q 003057 122 PVAHSA-----AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSG---DKIEGAFPILN 169 (852)
Q Consensus 122 ~v~~~~-----~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g---~~~~~w~~L~~ 169 (852)
.+..+. ..|.|+|+|.+..+ +++||++.++|+++..+ ...+.|++|.+
T Consensus 54 ~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 54 NFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred ecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 975432 57999999999877 79999999999999765 45788999965
No 79
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.64 E-value=6e-16 Score=150.96 Aligned_cols=97 Identities=31% Similarity=0.445 Sum_probs=85.1
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCE---------------------
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGA--------------------- 99 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~--------------------- 99 (852)
+.|.|+|++|++|+++|. .|.+||||+|.+...
T Consensus 28 ~~L~V~vi~a~~L~~~d~--------------------------~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (153)
T cd08676 28 FVLKVTVIEAKGLLAKDV--------------------------NGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVL 81 (153)
T ss_pred EEEEEEEEeccCCcccCC--------------------------CCCCCceEEEEEcccccccccccccccccccccccc
Confidence 899999999999999885 456999999999531
Q ss_pred -------EEeeeeeecCCCCCeeeeEEEEeecCC-CcEEEEEEEecCCcCCceeeeEEEeeeeecCCCeeeeeeec
Q 003057 100 -------VIGRTFVISNSESPVWMQHFNVPVAHS-AAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPI 167 (852)
Q Consensus 100 -------~~~rT~vi~~t~nP~WnE~F~~~v~~~-~~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L 167 (852)
.++||++++++.||+|||+|.|++.+. .+.|.|+|+|++ +++||++.++++++. +...+.||+|
T Consensus 82 ~~~~~~~~~~kT~v~~~tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~-~~~~d~W~~L 153 (153)
T cd08676 82 KDTVPAKSIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLP-SCGLDSWFKL 153 (153)
T ss_pred cccccccccEecceecCCCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence 246999999999999999999999765 478999999987 889999999999998 4557999987
No 80
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.64 E-value=1.3e-15 Score=145.01 Aligned_cols=102 Identities=25% Similarity=0.327 Sum_probs=84.5
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeecCCCCCeeeeE
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAVIGRTFVISNSESPVWMQH 118 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~~~~~rT~vi~~t~nP~WnE~ 118 (852)
+.|+|+|++|++|+.++.. .+++||||+|.+. .....||++++++.||+|||+
T Consensus 16 ~~L~V~Vi~a~~L~~~~~~-------------------------~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~ 70 (128)
T cd08388 16 KALLVNIIECRDLPAMDEQ-------------------------SGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDET 70 (128)
T ss_pred CEEEEEEEEeECCCCCCCC-------------------------CCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeE
Confidence 6899999999999987741 2568999999994 334459999999999999999
Q ss_pred EEEe-ecC---CCcEEEEEEEecCCcC-CceeeeEEEeeeeecC--CCeeeeeeec
Q 003057 119 FNVP-VAH---SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS--GDKIEGAFPI 167 (852)
Q Consensus 119 F~~~-v~~---~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~--g~~~~~w~~L 167 (852)
|.|. +.. ....|.|+|+|++..+ +++||++.|+|+++.. +.....|++|
T Consensus 71 F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 71 FTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred EEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 9994 432 1246999999999886 8899999999999864 3678899988
No 81
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.64 E-value=3.3e-16 Score=150.50 Aligned_cols=108 Identities=30% Similarity=0.420 Sum_probs=91.0
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CE--EEeeeeeecCCCCCee
Q 003057 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GA--VIGRTFVISNSESPVW 115 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~~--~~~rT~vi~~t~nP~W 115 (852)
+|.|+|+|++|++|+++|. .+.+||||+|.+. +. ...||++++++.||+|
T Consensus 13 ~~~L~V~v~~A~~L~~~d~--------------------------~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~w 66 (134)
T cd08403 13 AGRLTLTIIKARNLKAMDI--------------------------TGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTY 66 (134)
T ss_pred CCEEEEEEEEeeCCCcccc--------------------------CCCCCceEEEEEEeCCcccceecCCcccCCCCCcc
Confidence 5899999999999999875 3558999999993 22 3569999999999999
Q ss_pred eeEEEEeecCCC---cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCC
Q 003057 116 MQHFNVPVAHSA---AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (852)
Q Consensus 116 nE~F~~~v~~~~---~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~ 175 (852)
||+|.|++.... ..|.|+|+|++..+ +++||++.|++. ..+...++|++++...+++.
T Consensus 67 ne~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~~ 128 (134)
T cd08403 67 NEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKPI 128 (134)
T ss_pred cceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCee
Confidence 999999986432 46999999999887 899999999986 44666789999998888765
No 82
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.64 E-value=1e-15 Score=145.21 Aligned_cols=102 Identities=22% Similarity=0.230 Sum_probs=87.0
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeecCCCCCeeeeE
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAVIGRTFVISNSESPVWMQH 118 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~~~~~rT~vi~~t~nP~WnE~ 118 (852)
+.|+|+|++|++|+.+|. .+.+||||+|.+. +....||++++++.||+|||+
T Consensus 16 ~~L~v~v~~a~~L~~~d~--------------------------~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~ 69 (125)
T cd08386 16 STLTLKILKAVELPAKDF--------------------------SGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNET 69 (125)
T ss_pred CEEEEEEEEecCCCCccC--------------------------CCCCCceEEEEECCCCCcceeeeeecCCCCCcccee
Confidence 589999999999998875 3458999999993 344569999999999999999
Q ss_pred EEEeecCC----CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecc
Q 003057 119 FNVPVAHS----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (852)
Q Consensus 119 F~~~v~~~----~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 168 (852)
|.|++... ...|.|+|+|++..+ +++||++.++++++..+...+.|++|.
T Consensus 70 f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 70 FLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred EEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 99975322 256999999999876 789999999999999888899999984
No 83
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.64 E-value=5.4e-16 Score=149.46 Aligned_cols=110 Identities=22% Similarity=0.340 Sum_probs=92.2
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--C--EEEeeeeeecCCCCCeee
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--G--AVIGRTFVISNSESPVWM 116 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~--~~~~rT~vi~~t~nP~Wn 116 (852)
|+|.|+|++|++|+.++. .+.+||||+|.+. + ....||++++++.||+||
T Consensus 15 ~~L~v~vi~a~~L~~~~~--------------------------~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wn 68 (136)
T cd08405 15 NRITVNIIKARNLKAMDI--------------------------NGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFN 68 (136)
T ss_pred CeEEEEEEEeeCCCcccc--------------------------CCCCCceEEEEEEeCCCccccccCcceeCCCCCccc
Confidence 889999999999998775 4568999999983 2 234589999999999999
Q ss_pred eEEEEeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCC
Q 003057 117 QHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAG 178 (852)
Q Consensus 117 E~F~~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~ 178 (852)
|+|.|++... ...|.|+|+|.+..+ +++||++.|++.+. |...++|++|+...++|...+
T Consensus 69 e~F~f~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~~~~w 132 (136)
T cd08405 69 ESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQPVAQW 132 (136)
T ss_pred ceEEEeCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCchhEE
Confidence 9999987532 357999999999887 78999999999875 677889999998888876444
No 84
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.64 E-value=1e-15 Score=144.73 Aligned_cols=103 Identities=26% Similarity=0.448 Sum_probs=87.3
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CE--EEeeeeeecCCCCCee
Q 003057 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GA--VIGRTFVISNSESPVW 115 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~~--~~~rT~vi~~t~nP~W 115 (852)
.|.|.|+|++|++|+.++.. .+.+||||+|.+. .. ..+||++++++.||+|
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~-------------------------~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~w 67 (123)
T cd08521 13 TGSLEVHIKECRNLAYADEK-------------------------KKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVF 67 (123)
T ss_pred CCEEEEEEEEecCCCCcCCC-------------------------CCCCCcEEEEEEecCCCcCceeeccccCCCCCCcc
Confidence 37899999999999987721 3568999999983 21 3469999999999999
Q ss_pred eeEEEEeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeec
Q 003057 116 MQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPI 167 (852)
Q Consensus 116 nE~F~~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 167 (852)
||+|.|++... ...|.|.|+|++..+ +++||++.++|+++..+...+.||+|
T Consensus 68 ne~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 68 NETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred cceEEEeCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 99999998653 357999999999877 78999999999999878888999987
No 85
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.63 E-value=3.4e-15 Score=139.78 Aligned_cols=112 Identities=27% Similarity=0.409 Sum_probs=89.0
Q ss_pred EEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEe
Q 003057 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (852)
Q Consensus 43 L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~~ 122 (852)
|+|+|++|++|+.+ +++||||.|++++.+++||+++++ .||+|||+|.|.
T Consensus 2 L~v~vi~a~~l~~~-----------------------------~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~ 51 (117)
T cd08383 2 LRLRILEAKNLPSK-----------------------------GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFD 51 (117)
T ss_pred eEEEEEEecCCCcC-----------------------------CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEe
Confidence 88999999999854 348999999999888789999999 999999999999
Q ss_pred ecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEe
Q 003057 123 VAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (852)
Q Consensus 123 v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f 187 (852)
+.+. ...|.|.++|.+..+ +..+|+ ++|..+..+...+.||+|...+++. +..|+|++.++|
T Consensus 52 v~~~~~~~~~l~i~v~d~~~~~~~~~~g~--v~l~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 52 DPPPDVTFFTLSFYNKDKRSKDRDIVIGK--VALSKLDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred cCCccccEEEEEEEEEecccCCCeeEEEE--EEecCcCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 9773 356778888876554 445565 5566666678889999997655432 456899999986
No 86
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.63 E-value=3.4e-15 Score=145.47 Aligned_cols=101 Identities=19% Similarity=0.355 Sum_probs=84.4
Q ss_pred CCCCCcEEEEEE----CCEEEeeeeeecCCCCCeeeeEEEEeecCC---------CcEEEEEEEecCCc--CCceeeeEE
Q 003057 85 KITSDPYVTVSI----CGAVIGRTFVISNSESPVWMQHFNVPVAHS---------AAEVHFVVKDNDFV--GSQIMGAVG 149 (852)
Q Consensus 85 ~g~~DpYv~v~l----~~~~~~rT~vi~~t~nP~WnE~F~~~v~~~---------~~~l~~~V~D~d~~--~~~~iG~~~ 149 (852)
.+.+||||++.+ .+....||+++++|+||+|||+|.|.+... ...|.|+|||++.+ +|++||++.
T Consensus 22 ~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~ 101 (155)
T cd08690 22 PKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQ 101 (155)
T ss_pred CCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEE
Confidence 566899999998 444456999999999999999999998654 24699999999875 489999999
Q ss_pred EeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEee
Q 003057 150 IPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (852)
Q Consensus 150 i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~ 188 (852)
++|+.+........|++|++ +.+ +.+|+|++.++-.
T Consensus 102 i~L~~l~~~~~~~~~~~L~~-~~k--~~Gg~l~v~ir~r 137 (155)
T cd08690 102 VKLEPLETKCEIHESVDLMD-GRK--ATGGKLEVKVRLR 137 (155)
T ss_pred EEcccccccCcceEEEEhhh-CCC--CcCCEEEEEEEec
Confidence 99999987777888999974 444 4678999999865
No 87
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.61 E-value=2.9e-15 Score=141.60 Aligned_cols=104 Identities=20% Similarity=0.191 Sum_probs=88.3
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeecCCCCCeeee
Q 003057 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAVIGRTFVISNSESPVWMQ 117 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~~~~~rT~vi~~t~nP~WnE 117 (852)
.+.|.|+|++|++|++++.. .+.+||||+|.+. +...+||++++++.||+|||
T Consensus 13 ~~~L~V~v~~a~~L~~~~~~-------------------------~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne 67 (123)
T cd08390 13 EEQLTVSLIKARNLPPRTKD-------------------------VAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDE 67 (123)
T ss_pred CCEEEEEEEEecCCCCccCC-------------------------CCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccce
Confidence 36899999999999988620 3458999999983 34556999999999999999
Q ss_pred EEEEeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecc
Q 003057 118 HFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (852)
Q Consensus 118 ~F~~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 168 (852)
+|.|++... ...|.|.|+|.+..+ +++||++.++|+++........|++|.
T Consensus 68 ~f~f~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 68 TFVFQVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred EEEEEcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 999998653 257999999998876 789999999999999877788999983
No 88
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.61 E-value=9.9e-16 Score=146.94 Aligned_cols=107 Identities=33% Similarity=0.454 Sum_probs=92.3
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeee
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVWM 116 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~----~~~~rT~vi~~t~nP~Wn 116 (852)
|.|.|+|++|++|++++. .+.+||||+|.+.. ....||+++.++.||+||
T Consensus 14 ~~L~V~v~~a~~L~~~~~--------------------------~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wn 67 (134)
T cd00276 14 ERLTVVVLKARNLPPSDG--------------------------KGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFN 67 (134)
T ss_pred CEEEEEEEEeeCCCCccC--------------------------CCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeee
Confidence 789999999999998764 45589999999953 235699999999999999
Q ss_pred eEEEEeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCC
Q 003057 117 QHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (852)
Q Consensus 117 E~F~~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~ 175 (852)
|+|.|++... ...|.|+|+|.+..+ +++||++.+++++ .+...+.|++|++..+++.
T Consensus 68 e~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~ 128 (134)
T cd00276 68 EAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPI 128 (134)
T ss_pred eeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCce
Confidence 9999998764 367999999998865 8899999999998 6788899999998878765
No 89
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.61 E-value=8.9e-16 Score=147.68 Aligned_cols=109 Identities=24% Similarity=0.394 Sum_probs=88.5
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC-C---EEEeeeeeecCCCCCeee
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC-G---AVIGRTFVISNSESPVWM 116 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~-~---~~~~rT~vi~~t~nP~Wn 116 (852)
|.|+|+|++|++|+.+|. .+++||||+|.+. + ....||++++++.||+||
T Consensus 14 ~~L~V~vi~a~~L~~~d~--------------------------~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wn 67 (135)
T cd08410 14 GRLNVDIIRAKQLLQTDM--------------------------SQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYN 67 (135)
T ss_pred CeEEEEEEEecCCCcccC--------------------------CCCCCeEEEEEEEcCCcccceEcCccccCCCCCccc
Confidence 889999999999998875 4568999999982 2 234599999999999999
Q ss_pred eEEEEeecCCC---cEEEEEEEecCCcC-CceeeeEEEeeeeecCCC-eeeeeeecccCCCCCCCC
Q 003057 117 QHFNVPVAHSA---AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGD-KIEGAFPILNSSRKPCKA 177 (852)
Q Consensus 117 E~F~~~v~~~~---~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~-~~~~w~~L~~~~~~~~~~ 177 (852)
|+|.|.+.... ..|.|+|+|++..+ +++||++.|+. +..|. ..++|+.|+...++++..
T Consensus 68 E~F~f~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~--~~~~~~~~~~W~~l~~~~~~~~~~ 131 (135)
T cd08410 68 ESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQ--YSSGPSETNHWRRMLNSQRTAVEQ 131 (135)
T ss_pred eeEEEeCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcC--ccCCchHHHHHHHHHhCCCCEeeE
Confidence 99999985432 36999999999876 88999988665 34344 578999999988887633
No 90
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.61 E-value=4e-15 Score=140.82 Aligned_cols=88 Identities=27% Similarity=0.342 Sum_probs=75.8
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~ 120 (852)
|+|+|+|++|++|+. +. .+.+||||+|.+++.+ .||++++++.||+|||+|.
T Consensus 28 ~~L~V~V~~A~~L~~-d~--------------------------~g~~DPYVkV~~~~~~-~kT~vi~~t~nPvWNE~F~ 79 (127)
T cd04032 28 ATLTVTVLRATGLWG-DY--------------------------FTSTDGYVKVFFGGQE-KRTEVIWNNNNPRWNATFD 79 (127)
T ss_pred EEEEEEEEECCCCCc-Cc--------------------------CCCCCeEEEEEECCcc-ccCceecCCCCCcCCCEEE
Confidence 899999999999973 43 3458999999998874 5999999999999999999
Q ss_pred EeecC--CCcEEEEEEEecCCcC-CceeeeEEEeeeeec
Q 003057 121 VPVAH--SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLC 156 (852)
Q Consensus 121 ~~v~~--~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~ 156 (852)
|.... ..+.|+|+|||++..+ +++||++.++|+...
T Consensus 80 f~~~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 80 FGSVELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred EecccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 97433 3578999999999986 899999999998554
No 91
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.60 E-value=2.8e-15 Score=142.01 Aligned_cols=101 Identities=17% Similarity=0.223 Sum_probs=86.0
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEE--CCEEEeeeeeecCCCCCeeeeE
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSI--CGAVIGRTFVISNSESPVWMQH 118 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l--~~~~~~rT~vi~~t~nP~WnE~ 118 (852)
+.|.|+|++|+||++++. .+.+||||++.+ ......||+++++ .||+|||+
T Consensus 16 ~~L~V~Vi~a~nL~~~~~--------------------------~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~ 68 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDR--------------------------GGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNET 68 (124)
T ss_pred CEEEEEEEEecCCCchhc--------------------------CCCCCcEEEEEEccCCcceeecccccC-CCCcccCE
Confidence 689999999999998874 456899999887 2334459999888 99999999
Q ss_pred EEEe-ecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecc
Q 003057 119 FNVP-VAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (852)
Q Consensus 119 F~~~-v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 168 (852)
|.|+ +... ...|.|+|+|++..+ +++||++.|+|+++..+.....|++|.
T Consensus 69 F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 69 FTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred EEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 9998 5542 367999999999887 889999999999998888889999983
No 92
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.60 E-value=2.7e-15 Score=148.56 Aligned_cols=103 Identities=28% Similarity=0.376 Sum_probs=85.1
Q ss_pred eceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC----CEEEeeeeeecCCCCCe
Q 003057 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC----GAVIGRTFVISNSESPV 114 (852)
Q Consensus 39 l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~----~~~~~rT~vi~~t~nP~ 114 (852)
..|.|.|+|++|++|+.++. .+.+||||+|.+. +....||++++++.||+
T Consensus 25 ~~g~L~V~Vi~A~nL~~~d~--------------------------~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~ 78 (162)
T cd04020 25 STGELHVWVKEAKNLPALKS--------------------------GGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPV 78 (162)
T ss_pred CCceEEEEEEeeeCCCCCCC--------------------------CCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCC
Confidence 34899999999999998875 4568999999983 33456999999999999
Q ss_pred eeeEEEEeecCC----CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeec
Q 003057 115 WMQHFNVPVAHS----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPI 167 (852)
Q Consensus 115 WnE~F~~~v~~~----~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 167 (852)
|||+|.|++... ...|.|+|||++..+ +++||++.+++.++......+.|+++
T Consensus 79 WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 79 WNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred CCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 999999985432 257999999999887 89999999999998754455667666
No 93
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.60 E-value=1.3e-15 Score=146.90 Aligned_cols=110 Identities=18% Similarity=0.261 Sum_probs=89.8
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC---CE--EEeeeeeecCCCCCe
Q 003057 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC---GA--VIGRTFVISNSESPV 114 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~---~~--~~~rT~vi~~t~nP~ 114 (852)
.|+|.|+|++|+||+.++. .+++||||+|.|. +. ...||++++++.||+
T Consensus 14 ~~~L~V~VikarnL~~~~~--------------------------~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPv 67 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAM--------------------------NKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPE 67 (138)
T ss_pred CCeEEEEEEEecCCCcccc--------------------------CCCCCeeEEEEEEeCCCcceeeccceeecCCCCCc
Confidence 3899999999999998875 4568999999993 22 234999999999999
Q ss_pred eeeEEEEeecCCC---cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCC
Q 003057 115 WMQHFNVPVAHSA---AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCK 176 (852)
Q Consensus 115 WnE~F~~~v~~~~---~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~ 176 (852)
|||+|.|+++... ..|.|+|+|.+..+ +++||++.|++.... ....++|+.++...++++.
T Consensus 68 fnEtF~f~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~~~~v~ 132 (138)
T cd08408 68 FKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESKGQQVC 132 (138)
T ss_pred EeeeEEEECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCCCCEEe
Confidence 9999999987532 57999999998876 889999999886332 2346899999988887663
No 94
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.60 E-value=4.3e-15 Score=143.14 Aligned_cols=101 Identities=20% Similarity=0.295 Sum_probs=86.8
Q ss_pred EEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC---EEEeeeeeecCCCCCeeeeEE
Q 003057 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG---AVIGRTFVISNSESPVWMQHF 119 (852)
Q Consensus 43 L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~---~~~~rT~vi~~t~nP~WnE~F 119 (852)
|+|+|++|++|+.+ . .+.+||||+|.+.. ....||+++.++.||+|||+|
T Consensus 1 L~V~Vi~A~~L~~~-~--------------------------~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f 53 (137)
T cd08675 1 LSVRVLECRDLALK-S--------------------------NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAF 53 (137)
T ss_pred CEEEEEEccCCCcc-c--------------------------CCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEE
Confidence 68999999999876 3 45689999999983 445699999999999999999
Q ss_pred EEeecCC----------------CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccC
Q 003057 120 NVPVAHS----------------AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNS 170 (852)
Q Consensus 120 ~~~v~~~----------------~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~ 170 (852)
.|++... ...|+|+|||++..+ +++||++.++++++......+.||+|...
T Consensus 54 ~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 54 YFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 9998764 357999999999875 88999999999999877778999999543
No 95
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.60 E-value=3.8e-16 Score=166.49 Aligned_cols=105 Identities=28% Similarity=0.425 Sum_probs=91.6
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC----CEEEeeeeeecCCCCCee
Q 003057 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC----GAVIGRTFVISNSESPVW 115 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~----~~~~~rT~vi~~t~nP~W 115 (852)
...|+|+|.+|+||.+||. +|.|||||+++|- +....||++|+.++||+|
T Consensus 179 ~~~l~v~i~ea~NLiPMDp--------------------------NGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~w 232 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDP--------------------------NGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVW 232 (683)
T ss_pred CceEEEEehhhccccccCC--------------------------CCCCCcceeEEeccCCcchhhhhhhhhhhhcCccc
Confidence 3569999999999999997 8899999999992 333449999999999999
Q ss_pred eeEEEEeecCCC--cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCC
Q 003057 116 MQHFNVPVAHSA--AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSS 171 (852)
Q Consensus 116 nE~F~~~v~~~~--~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~ 171 (852)
||+|.+.+.... ..|.+.|||||+.+ +||+|..++.+++|. ....++||.|+++.
T Consensus 233 NEtftf~Lkp~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~-K~p~~GWyKlLsqe 290 (683)
T KOG0696|consen 233 NETFTFKLKPSDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQ-KAPVDGWYKLLSQE 290 (683)
T ss_pred cceeEEecccccccceeEEEEecccccccccccceecccHHHHh-hcchhhHHHHhhhh
Confidence 999999875443 78999999999988 899999999999998 55688999998763
No 96
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.60 E-value=5e-15 Score=143.62 Aligned_cols=93 Identities=30% Similarity=0.503 Sum_probs=83.4
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~ 120 (852)
|.|+|+|++|++|+..|. +++||||+|++++++. ||++++++.||+|||+|.
T Consensus 2 G~L~V~Vi~a~nL~~~d~---------------------------~~sDPYV~v~~g~~~~-kT~vvk~t~nP~WnE~f~ 53 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF---------------------------TSSDPYVVLTLGNQKV-KTRVIKKNLNPVWNEELT 53 (145)
T ss_pred eEEEEEEEeeECCCCCCC---------------------------CCcCcEEEEEECCEEE-EeeeEcCCCCCeecccEE
Confidence 899999999999997663 3489999999988775 999999999999999999
Q ss_pred EeecCCCcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCee
Q 003057 121 VPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKI 161 (852)
Q Consensus 121 ~~v~~~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~ 161 (852)
|.+.++...+.|+|||++.++ +++||++.+++.++......
T Consensus 54 f~i~~~~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~~~ 95 (145)
T cd04038 54 LSVPNPMAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKL 95 (145)
T ss_pred EEecCCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhhhh
Confidence 999888889999999999887 88999999999998865443
No 97
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.58 E-value=1.9e-14 Score=136.83 Aligned_cols=118 Identities=30% Similarity=0.450 Sum_probs=95.0
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC-----EEEeeeeeecCCC-CCee
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG-----AVIGRTFVISNSE-SPVW 115 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~-----~~~~rT~vi~~t~-nP~W 115 (852)
.|+|+|++|++|++++.. ..+..||||+|++.+ ....||+++.++. ||+|
T Consensus 3 ~l~v~vi~a~~L~~~~~~------------------------~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w 58 (128)
T cd00275 3 TLTIKIISGQQLPKPKGD------------------------KGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVW 58 (128)
T ss_pred EEEEEEEeeecCCCCCCC------------------------CCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCcc
Confidence 689999999999987620 034589999999942 2335999988765 9999
Q ss_pred eeEEEEeecCCC-cEEEEEEEecCCcCCceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEe
Q 003057 116 MQHFNVPVAHSA-AEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (852)
Q Consensus 116 nE~F~~~v~~~~-~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f 187 (852)
||+|.|++.... +.|.|.|+|.+..++++||++.++++++..|. +|++|.+.+|++ ...|.|.+.+++
T Consensus 59 ~e~f~f~~~~~~~~~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g~---~~~~l~~~~~~~-~~~~~l~v~~~~ 127 (128)
T cd00275 59 NETFEFDVTVPELAFLRFVVYDEDSGDDDFLGQACLPLDSLRQGY---RHVPLLDSKGEP-LELSTLFVHIDI 127 (128)
T ss_pred CCcEEEEEeCCCeEEEEEEEEeCCCCCCcEeEEEEEEhHHhcCce---EEEEecCCCCCC-CcceeEEEEEEE
Confidence 999999987655 67999999988777889999999999997653 689999888874 355788887765
No 98
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.58 E-value=2.7e-15 Score=144.65 Aligned_cols=108 Identities=22% Similarity=0.297 Sum_probs=90.5
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--E--EEeeeeeecCCCCCeee
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--A--VIGRTFVISNSESPVWM 116 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~--~--~~~rT~vi~~t~nP~Wn 116 (852)
+.|.|+|++|+||+.++ . +.+||||+|.|.. . ...||++++++.||+||
T Consensus 15 ~~L~V~V~~a~nL~~~~-~--------------------------~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fn 67 (137)
T cd08409 15 NRLTVVVLRARGLRQLD-H--------------------------AHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFN 67 (137)
T ss_pred CeEEEEEEEecCCCccc-C--------------------------CCCCeEEEEEEEECCEEeeeeecccEeCCCCCccc
Confidence 78999999999999876 2 3389999999842 2 23489999999999999
Q ss_pred eEEEEeecCCC---cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCC
Q 003057 117 QHFNVPVAHSA---AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (852)
Q Consensus 117 E~F~~~v~~~~---~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~ 175 (852)
|+|.|+++... ..|.|+|+|.+..+ +++||++.|+.....+|...++|.+++...++++
T Consensus 68 E~F~f~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i 130 (137)
T cd08409 68 ESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELI 130 (137)
T ss_pred ceEEEECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCce
Confidence 99999986432 57999999998766 8899999999877777888999999988767655
No 99
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.58 E-value=8.3e-15 Score=140.20 Aligned_cols=107 Identities=28% Similarity=0.422 Sum_probs=90.3
Q ss_pred eeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCC
Q 003057 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESP 113 (852)
Q Consensus 38 ~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~----~~~~rT~vi~~t~nP 113 (852)
+..|.|.|+|++|++|+..+. .+..||||+|.+.. ...+||++++++.||
T Consensus 10 ~~~~~l~v~i~~a~nL~~~~~--------------------------~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P 63 (131)
T cd04026 10 VKDNKLTVEVREAKNLIPMDP--------------------------NGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNP 63 (131)
T ss_pred ECCCEEEEEEEEeeCCCCcCC--------------------------CCCCCCcEEEEEEcCCCCCceecceeecCCCCC
Confidence 345899999999999997764 34589999999963 356799999999999
Q ss_pred eeeeEEEEeecCC--CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCC
Q 003057 114 VWMQHFNVPVAHS--AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSS 171 (852)
Q Consensus 114 ~WnE~F~~~v~~~--~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~ 171 (852)
.|||+|.|++... ...|.|+|+|.+..+ +++||++.++|+++... ..+.||+|.+++
T Consensus 64 ~wne~f~~~~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~ 123 (131)
T cd04026 64 VWNETFTFDLKPADKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQE 123 (131)
T ss_pred CccceEEEeCCchhcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcc
Confidence 9999999998654 367999999998776 78999999999999854 678999997653
No 100
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.56 E-value=3.6e-14 Score=130.92 Aligned_cols=79 Identities=20% Similarity=0.425 Sum_probs=67.2
Q ss_pred EEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeeeeE
Q 003057 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVWMQH 118 (852)
Q Consensus 43 L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~----~~~~rT~vi~~t~nP~WnE~ 118 (852)
|+|+|++|++|+. .+||||++.++. ...+|||++++|+||+|||+
T Consensus 1 L~V~V~~A~~L~~-------------------------------~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~ 49 (118)
T cd08686 1 LNVIVHSAQGFKQ-------------------------------SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEE 49 (118)
T ss_pred CEEEEEeCCCCCC-------------------------------CCCCEEEEEEcCccccceeeeeeeecCCCCCccceE
Confidence 6899999999962 279999999953 35689999999999999999
Q ss_pred EEEeecCCCcEEEEEEEec-------CCcC-CceeeeEEEeee
Q 003057 119 FNVPVAHSAAEVHFVVKDN-------DFVG-SQIMGAVGIPVE 153 (852)
Q Consensus 119 F~~~v~~~~~~l~~~V~D~-------d~~~-~~~iG~~~i~l~ 153 (852)
|.|++. ....|.|+|||+ |..+ ++++|++.+.|.
T Consensus 50 F~i~l~-~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 50 FEIELE-GSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred EEEEeC-CCCEEEEEEEEcccccccccccCcccEEEEEEEEEC
Confidence 999997 467999999997 3445 789999888874
No 101
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.55 E-value=3.3e-14 Score=134.68 Aligned_cols=116 Identities=21% Similarity=0.276 Sum_probs=89.5
Q ss_pred EEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEE-eeeeeecCCCCCeeeeEEEE
Q 003057 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVI-GRTFVISNSESPVWMQHFNV 121 (852)
Q Consensus 43 L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~-~rT~vi~~t~nP~WnE~F~~ 121 (852)
|+|+|++|++|+++|. .+.+||||+|.+++.+. .||++++++.||+|||+|.|
T Consensus 2 lrV~Vi~a~~L~~~d~--------------------------~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f 55 (124)
T cd04037 2 VRVYVVRARNLQPKDP--------------------------NGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFEL 55 (124)
T ss_pred EEEEEEECcCCCCCCC--------------------------CCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEE
Confidence 7999999999999885 45689999999987654 58999999999999999999
Q ss_pred eecCC-CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEeec
Q 003057 122 PVAHS-AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (852)
Q Consensus 122 ~v~~~-~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~p 189 (852)
++..+ .+.|.|+|||++..+ +++||++.++|++..- ..+|..+.-+...+ ..|.++....+.|
T Consensus 56 ~~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 120 (124)
T cd04037 56 EATLPGNSILKISVMDYDLLGSDDLIGETVIDLEDRFF---SKHRATCGLPPTYE--ESGPNQWRDSLKP 120 (124)
T ss_pred EecCCCCCEEEEEEEECCCCCCCceeEEEEEeeccccc---chHHHhccCCCccc--ccCceecCcccCc
Confidence 98654 368999999999886 8999999999987663 23455543332221 3456665555444
No 102
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.54 E-value=4.8e-14 Score=133.76 Aligned_cols=116 Identities=21% Similarity=0.373 Sum_probs=89.7
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEE
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNV 121 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~ 121 (852)
.|+|+|++|+ |...+. .+.+||||+|.+++...+||++++++.||+|||+|.|
T Consensus 3 ~L~V~i~~a~-l~~~~~--------------------------~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~ 55 (125)
T cd04021 3 QLQITVESAK-LKSNSK--------------------------SFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTV 55 (125)
T ss_pred eEEEEEEeeE-CCCCCc--------------------------CCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEE
Confidence 6899999999 544432 3458999999998875679999999999999999999
Q ss_pred eecCCCcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCe-----eeeeeecccCCCCCCCCCceeeeeE
Q 003057 122 PVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDK-----IEGAFPILNSSRKPCKAGAVLSLSI 185 (852)
Q Consensus 122 ~v~~~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~-----~~~w~~L~~~~~~~~~~~g~I~l~l 185 (852)
.+. ..+.|.|.|+|++..+ +++||++.++|+++..... ...|+++..+..--.+..|+|++.+
T Consensus 56 ~~~-~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 56 LVT-PQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred EeC-CCCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 985 4578999999999886 8999999999999884322 3458998643310113457776653
No 103
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.54 E-value=1.9e-14 Score=138.09 Aligned_cols=91 Identities=26% Similarity=0.406 Sum_probs=79.0
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC------EEEeeeeeecCCCCCe
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG------AVIGRTFVISNSESPV 114 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~------~~~~rT~vi~~t~nP~ 114 (852)
+.|.|+|++|++|+.++. .+++||||+|.+.. ....||++++++.||+
T Consensus 16 ~~L~V~Vi~A~~L~~~~~--------------------------~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~ 69 (133)
T cd04009 16 QSLRVEILNARNLLPLDS--------------------------NGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPL 69 (133)
T ss_pred CEEEEEEEEeeCCCCcCC--------------------------CCCCCCEEEEEEECCCcCccccccccccCcCCCCCc
Confidence 679999999999998875 45689999999952 3456999999999999
Q ss_pred eeeEEEEeecCC-----CcEEEEEEEecCCcC-CceeeeEEEeeeeecC
Q 003057 115 WMQHFNVPVAHS-----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS 157 (852)
Q Consensus 115 WnE~F~~~v~~~-----~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~ 157 (852)
|||+|.|++... ...|.|+|||++..+ +++||++.++|+++..
T Consensus 70 wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 70 FDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred cCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 999999998652 357999999999888 8999999999999883
No 104
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=7.4e-14 Score=158.13 Aligned_cols=175 Identities=25% Similarity=0.209 Sum_probs=124.5
Q ss_pred eceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeecCCCCCeee
Q 003057 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAVIGRTFVISNSESPVWM 116 (852)
Q Consensus 39 l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~~~~~rT~vi~~t~nP~Wn 116 (852)
-+..|.|+|++|++|+.+|. .|++||||++.|- .....+|++.++++||+||
T Consensus 165 ~~~~L~V~V~qa~~Lp~~d~--------------------------~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fn 218 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAKDR--------------------------GGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFN 218 (421)
T ss_pred cCCEEEEEEEEecCCCcccC--------------------------CCCCCCeeEEEEcCCCCCcceeeeeecCcCCccc
Confidence 45679999999999999883 5679999999994 3223499999999999999
Q ss_pred eEEEEeecCCC---cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEeecccc
Q 003057 117 QHFNVPVAHSA---AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTPVEN 192 (852)
Q Consensus 117 E~F~~~v~~~~---~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~p~~~ 192 (852)
|+|.|.|++.. ..|.|+|+|.|+++ +++||++.++|..+........|.+|........+..|+|.++++|.|...
T Consensus 219 Etf~f~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g 298 (421)
T KOG1028|consen 219 ETFRFEVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAG 298 (421)
T ss_pred cceEeecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCC
Confidence 99999987653 67999999999998 899999999998888666678899997543333234479999999999844
Q ss_pred cc-cc---ccccCCCCCcCCCCCCCCccccCceeEEeecccccCCCccceeccCCccc
Q 003057 193 MS-LY---YRGVGSGPDYIGVPGTYFPLRRGGKVTLYQDAHAHDGCLADLKLDGGVQF 246 (852)
Q Consensus 193 ~~-~~---~~gv~~~~~~~g~~~~~~p~~~g~~v~l~~dg~~~~~~~~~i~~~~g~~y 246 (852)
.. .+ .+.+.. .+-.++++ |. .++.++.++....++...++-....++
T Consensus 299 ~ltv~v~kar~L~~-~~~~~~~d---~~---Vk~~l~~~~~~~~kkkT~~~~~~~npv 349 (421)
T KOG1028|consen 299 RLTVVVIKARNLKS-MDVGGLSD---PY---VKVTLLDGDKRLSKKKTSVKKKTLNPV 349 (421)
T ss_pred eEEEEEEEecCCCc-ccCCCCCC---cc---EEEEEecCCceeeeeeeecccCCCCCc
Confidence 22 11 112211 12223333 33 266777776443344444444444444
No 105
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.52 E-value=1.1e-13 Score=139.10 Aligned_cols=144 Identities=22% Similarity=0.276 Sum_probs=108.0
Q ss_pred hHHHHHHHHHHhccceEEEEEEecCceeEEEeCCCCchHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccccCCCc
Q 003057 250 SCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTND 329 (852)
Q Consensus 250 ~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~ 329 (852)
++++.++++|.+|+++|+|+.|.+++.. ......|.++|.+++++||+|+||+++.... .. ...
T Consensus 21 ~~~~~i~~~I~~A~~~I~i~~~~~~~~~-----~~~~~~l~~~L~~a~~rGv~V~il~~~~~~~-~~----------~~~ 84 (176)
T cd00138 21 SDLDALLEAISNAKKSIYIASFYLSPLI-----TEYGPVILDALLAAARRGVKVRILVDEWSNT-DL----------KIS 84 (176)
T ss_pred hHHHHHHHHHHhhheEEEEEEeEecccc-----cccchHHHHHHHHHHHCCCEEEEEEcccccC-Cc----------hHH
Confidence 6799999999999999999999655422 1235789999999999999999998443321 10 001
Q ss_pred HHHHhhhcC---CCeEEEeccCCCCCCCcccccccccccccCcccEEEEecCCCCCcccEEEEEcccccCCCccCCCCCC
Q 003057 330 EETRRFFKH---SSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHP 406 (852)
Q Consensus 330 ~~~~~~~~~---~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~ 406 (852)
......+.. .++++...+.... ...++|+|++|||++ ++++||.|+...+|.
T Consensus 85 ~~~~~~l~~~~~~~i~~~~~~~~~~------------~~~~~H~K~~iiD~~--------~~~vGS~N~~~~~~~----- 139 (176)
T cd00138 85 SAYLDSLRALLDIGVRVFLIRTDKT------------YGGVLHTKLVIVDDE--------TAYIGSANLDGRSLT----- 139 (176)
T ss_pred HHHHHHHHHhhcCceEEEEEcCCcc------------cccceeeeEEEEcCC--------EEEEECCcCChhhhh-----
Confidence 123334443 3788876653210 135899999999996 999999999986542
Q ss_pred CCcccccccCCCCCCCCcCCCCCCCCCCCeeeccceeeCh--HHHHHHHHHHHHHhhh
Q 003057 407 LFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGP--AAYDILTNFEERWLKA 462 (852)
Q Consensus 407 ~~~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gp--aa~dl~~~F~~rW~~~ 462 (852)
.++|+.+.+++| +|.++.+.|.+.|+..
T Consensus 140 ----------------------------~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 140 ----------------------------LNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred ----------------------------hhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 467999999999 7999999999999964
No 106
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.52 E-value=3.9e-14 Score=133.41 Aligned_cols=97 Identities=26% Similarity=0.376 Sum_probs=82.0
Q ss_pred EEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCE------EEeeeeeecCCCCCeeeeEE
Q 003057 46 WVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGA------VIGRTFVISNSESPVWMQHF 119 (852)
Q Consensus 46 ~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~------~~~rT~vi~~t~nP~WnE~F 119 (852)
..++|++|+++|. .+.+||||+|.+.+. .++||++++++.||+|||+|
T Consensus 5 ~~i~a~~L~~~d~--------------------------~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f 58 (120)
T cd04048 5 LSISCRNLLDKDV--------------------------LSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTF 58 (120)
T ss_pred EEEEccCCCCCCC--------------------------CCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEE
Confidence 4588999998876 345899999999654 35799999999999999999
Q ss_pred EEeecC-CCcEEEEEEEecCC----cC-CceeeeEEEeeeeecCCCeeeeeeecc
Q 003057 120 NVPVAH-SAAEVHFVVKDNDF----VG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (852)
Q Consensus 120 ~~~v~~-~~~~l~~~V~D~d~----~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 168 (852)
.|++.. ..+.|.|+|||++. .+ +++||++.+++++|..+.....|++|.
T Consensus 59 ~f~~~~~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 59 TVDYYFEEVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred EEEEEeEeeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 998643 34679999999986 55 899999999999999887788899994
No 107
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.52 E-value=8.6e-14 Score=131.64 Aligned_cols=100 Identities=24% Similarity=0.320 Sum_probs=82.8
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC----CEEEeeeeeecCCCCCeee
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC----GAVIGRTFVISNSESPVWM 116 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~----~~~~~rT~vi~~t~nP~Wn 116 (852)
+.|+|+|++|++|++.+. .+.+||||+|.+. ....+||++++++.||+||
T Consensus 15 ~~L~V~v~~a~~L~~~~~--------------------------~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wn 68 (123)
T cd04035 15 SALHCTIIRAKGLKAMDA--------------------------NGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFN 68 (123)
T ss_pred CEEEEEEEEeeCCCCCCC--------------------------CCCCCceEEEEEecCCCCCCceeeeeecCCCCCCcc
Confidence 689999999999998765 3458999999983 2345699999999999999
Q ss_pred eEEEEeecCC----CcEEEEEEEecCCcCCceeeeEEEeeeeecCCCeeeeeee
Q 003057 117 QHFNVPVAHS----AAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFP 166 (852)
Q Consensus 117 E~F~~~v~~~----~~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~ 166 (852)
|+|.|..... .+.+.|+|||.+..++++||++.++|++|..+...+.|+.
T Consensus 69 e~f~f~~~~~~~~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 69 ETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred ceEEEcCCCHHHhCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeecc
Confidence 9999963222 3689999999887778899999999999997776666654
No 108
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.51 E-value=1.8e-13 Score=131.43 Aligned_cols=115 Identities=24% Similarity=0.386 Sum_probs=87.9
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--E----------EEeeeeeecC
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--A----------VIGRTFVISN 109 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~--~----------~~~rT~vi~~ 109 (852)
++.|++++|++|+ ++.+ |++||||+|++.. . ...||+++++
T Consensus 2 ~~~~~~~~A~~L~-~~~f--------------------------g~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~ 54 (137)
T cd08691 2 SFSLSGLQARNLK-KGMF--------------------------FNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN 54 (137)
T ss_pred EEEEEEEEeCCCC-CccC--------------------------CCCCceEEEEEECCCcccccccccccceeeeeeEcC
Confidence 4689999999998 6653 4589999999942 2 2459999999
Q ss_pred CCCCee-eeEEEEeecCCCcEEEEEEEecCCcC----CceeeeEEEeeeeecCCC---eeeeeeecccCCCCCCCCCcee
Q 003057 110 SESPVW-MQHFNVPVAHSAAEVHFVVKDNDFVG----SQIMGAVGIPVEKLCSGD---KIEGAFPILNSSRKPCKAGAVL 181 (852)
Q Consensus 110 t~nP~W-nE~F~~~v~~~~~~l~~~V~D~d~~~----~~~iG~~~i~l~~l~~g~---~~~~w~~L~~~~~~~~~~~g~I 181 (852)
++||+| ||+|.|.+. ..+.|.|+|+|++..+ +++||++.|+++++..+. ....|++|.... -.....|+|
T Consensus 55 tlnP~W~nE~f~f~v~-~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~-~~s~v~G~~ 132 (137)
T cd08691 55 TINPVWHREQFVFVGL-PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT-PTDHVSGQL 132 (137)
T ss_pred CCCCceEceEEEEEcC-CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC-CCCcEEEEE
Confidence 999999 999999985 4568999999976432 689999999999998543 467799985332 222344666
Q ss_pred eeeE
Q 003057 182 SLSI 185 (852)
Q Consensus 182 ~l~l 185 (852)
.+.+
T Consensus 133 ~l~~ 136 (137)
T cd08691 133 TFRF 136 (137)
T ss_pred EEEe
Confidence 6553
No 109
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.49 E-value=1.9e-13 Score=155.08 Aligned_cols=146 Identities=17% Similarity=0.185 Sum_probs=103.1
Q ss_pred cccceeeeccCCccccCCCCCcccccccccccCcccchhhHHHHHHHHHHHhccceEEEeeccccccCCCcccccccCCC
Q 003057 504 AWHAQVFRSIDSNSVKGFPVEPRDATSMNLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGAN 583 (852)
Q Consensus 504 ~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~~g~~~~~e~sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~ 583 (852)
.|.++++.|++.+. .|+.. -.+.+++|+++|.+||++|+|+++||+++... .
T Consensus 5 ~~~~~~vesiP~~~--~~~~~-----------------~~~t~~~~~~lI~~Ak~~I~I~s~yf~~~d~~---------~ 56 (424)
T PHA02820 5 NTIAVITETIPIGM--QFDKV-----------------YLSTFNFWREILSNTTKTLDISSFYWSLSDEV---------G 56 (424)
T ss_pred ccEEEEEEecCCCC--CCCCC-----------------CCCHHHHHHHHHHhhCcEEEEEeEEEecCccc---------c
Confidence 36789999987654 23221 13789999999999999999999999964210 0
Q ss_pred CccHHHHHHHHHHHHHcCCCceEEEEecCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCceeee
Q 003057 584 NLIPMEIALKIANKIRANERFAAYILIPMWPEGITTSPQIQRILYWQHKTMQMMYETIYKALVESGLQNKYVPQDYLNFF 663 (852)
Q Consensus 584 n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~peg~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~Gv~~~~~p~~y~~~~ 663 (852)
...+..+..+|.++ +++||+|+|+++.. +.+ . ...+.|+++|+++++ |
T Consensus 57 ~~~G~~i~~aL~~a--A~rGV~VRIL~d~~--~~~-------~-------------~~~~~L~~aGv~v~~--------~ 104 (424)
T PHA02820 57 TNFGTMILNEIIQL--PKRGVRVRIAVNKS--NKP-------L-------------KDVELLQMAGVEVRY--------I 104 (424)
T ss_pred chhHHHHHHHHHHH--HHCCCEEEEEECCC--CCc-------h-------------hhHHHHHhCCCEEEE--------E
Confidence 01123455555554 47999999999853 110 0 234678899998752 1
Q ss_pred ccCCccccCCCCCCCCCCCCCCCchHHHhhccCeeeEEEEeeEEEEeceEEEEeccCCCCCCcCCCCCCceEEEeec
Q 003057 664 CLGNREALDGVDSSNAKDSTAANTPQALAKKNRRFQIYIHSKGMIVDDEYVIIGSANINQRSLEGTRDTEIAMGAYQ 740 (852)
Q Consensus 664 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d 740 (852)
... . + .....|+|+||||+++++|||+||+.||+. .|.|+++.+.+
T Consensus 105 ~~~--~----~-----------------------~~~~~HrK~~VIDg~~~~iGS~Nid~rsl~--~n~E~gv~i~~ 150 (424)
T PHA02820 105 DIT--N----I-----------------------LGGVLHTKFWISDNTHIYLGSANMDWRSLT--QVKELGIAIFN 150 (424)
T ss_pred ecC--C----C-----------------------CcccceeeEEEECCCEEEEeCCcCChhhhh--hCCceEEEEec
Confidence 100 0 0 013699999999999999999999999997 78999998865
No 110
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=3.9e-14 Score=156.53 Aligned_cols=151 Identities=23% Similarity=0.302 Sum_probs=119.4
Q ss_pred CCCCCCCccccCCccCCCCceeeeeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEE
Q 003057 15 GSNHGQGQEAVPFETHQGSLKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTV 94 (852)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v 94 (852)
...+.+.|..+..+...++.++. ..+++||++|.+|...|. .|.|||||++
T Consensus 272 ~~~~~e~lktvk~silegsskws---akitltvlcaqgl~akdk--------------------------tg~sdpyvt~ 322 (1283)
T KOG1011|consen 272 ENIQKETLKTVKASILEGSSKWS---AKITLTVLCAQGLIAKDK--------------------------TGKSDPYVTA 322 (1283)
T ss_pred hHHHHHHHHHHHHHHhccccccc---eeeEEeeeecccceeccc--------------------------CCCCCCcEEE
Confidence 33456667777777778888886 789999999999987764 6789999999
Q ss_pred EECCEEEeeeeeecCCCCCeeeeEEEEeecCCCcEEEEEEEecCCc------------CCceeeeEEEeeeeecCCCeee
Q 003057 95 SICGAVIGRTFVISNSESPVWMQHFNVPVAHSAAEVHFVVKDNDFV------------GSQIMGAVGIPVEKLCSGDKIE 162 (852)
Q Consensus 95 ~l~~~~~~rT~vi~~t~nP~WnE~F~~~v~~~~~~l~~~V~D~d~~------------~~~~iG~~~i~l~~l~~g~~~~ 162 (852)
++++.+. |||+|...+||+|||.|+|.|++....|.+.|||.|.. +|||+|+..|.+..|. | +++
T Consensus 323 qv~ktkr-rtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlksklrqkl~resddflgqtvievrtls-g-emd 399 (1283)
T KOG1011|consen 323 QVGKTKR-RTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS-G-EMD 399 (1283)
T ss_pred eecccch-hhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc-c-chh
Confidence 9999988 99999999999999999999998889999999997732 4789999999998775 4 478
Q ss_pred eeeecccCCCC-CCCCCceeeeeEEeeccccccccc
Q 003057 163 GAFPILNSSRK-PCKAGAVLSLSIQYTPVENMSLYY 197 (852)
Q Consensus 163 ~w~~L~~~~~~-~~~~~g~I~l~l~f~p~~~~~~~~ 197 (852)
-||.|.....| .+.+.-.+|++++.+-.++...|.
T Consensus 400 vwynlekrtdksavsgairlhisveikgeekvapyh 435 (1283)
T KOG1011|consen 400 VWYNLEKRTDKSAVSGAIRLHISVEIKGEEKVAPYH 435 (1283)
T ss_pred hhcchhhccchhhccceEEEEEEEEEcCccccccce
Confidence 89999643333 223444566666666655555554
No 111
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.43 E-value=2.4e-13 Score=173.15 Aligned_cols=118 Identities=19% Similarity=0.398 Sum_probs=98.4
Q ss_pred eceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeE
Q 003057 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQH 118 (852)
Q Consensus 39 l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~ 118 (852)
+-|.|.|+|++|+||. -+ -+++||||+|.+++....||||++++.||+|||.
T Consensus 1978 ~~G~L~V~V~~a~nl~-~~---------------------------~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~ 2029 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLK-QS---------------------------MGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEG 2029 (2102)
T ss_pred CCcceEEEEeeccccc-cc---------------------------cCCCCCeEEEEECCCCcccccccCCCCCCCcccc
Confidence 3599999999999998 22 2458999999999764449999999999999999
Q ss_pred EEEeecCCC--cEEEEEEEecCCcCCceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCce---eeeeEEee
Q 003057 119 FNVPVAHSA--AEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAV---LSLSIQYT 188 (852)
Q Consensus 119 F~~~v~~~~--~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~---I~l~l~f~ 188 (852)
|+|.+..+. +.|.|+|||+|.++++.||.+.|++.++..++.+..||+|.+ +|+ +.|+ |++.+++.
T Consensus 2030 f~~~~~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~-~~~---k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2030 FTWAFDSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNP-ESN---KDGSSRTLEIEFQWS 2100 (2102)
T ss_pred eeeeecCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecCc-ccc---cCCCcceEEEEEEec
Confidence 998877655 779999999999998899999999999999999999999964 332 1244 77776654
No 112
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.43 E-value=9.5e-13 Score=147.56 Aligned_cols=139 Identities=17% Similarity=0.222 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhccceEEEEEEecCceeEEEeCCC---CchHHHHHHHHhh-hcCCeEEEEEeCCCccccccccccccccC
Q 003057 251 CWQDVYDAINQARRLIYITGWSVYHTVRLVRDGS---NTLMLGDLLKIKS-QEGVRVLILAWDDPTSRSILGYKTDGIMS 326 (852)
Q Consensus 251 ~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~---~~~~l~~lL~~~a-~rGV~VriLvwD~~~s~~~~~~~~~~~~~ 326 (852)
..+.++++|.+||++|+|+++.|.| ++..+. .+..|.++|++|| +|||+||||+ |..+....
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P---~~~~d~~~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~---------- 282 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVP---VIREDDKTTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDV---------- 282 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEecccc---EEeeCCCCccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCc----------
Confidence 4689999999999999999997766 344333 2468999999885 9999999997 77543211
Q ss_pred CCcHHHHhhhcCCCeE----EEeccCCCCCCCcccccccccccccCcccEEEEecCCCCCcccEEEEEcccccCCCccCC
Q 003057 327 TNDEETRRFFKHSSVQ----VLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDT 402 (852)
Q Consensus 327 ~~~~~~~~~~~~~~v~----v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~r~Dt 402 (852)
......+.|...|++ +..+ .+.+|+|++|||++ +|||||.|+...++..
T Consensus 283 -~~~~~~~~L~~~G~~~~i~vri~------------------~~~~H~K~~VVD~~--------~a~iGS~N~d~~s~~~ 335 (369)
T PHA03003 283 -YSMASVKSLQALCVGNDLSVKVF------------------RIPNNTKLLIVDDE--------FAHITSANFDGTHYLH 335 (369)
T ss_pred -hhhhHHHHHHHcCCCCCceEeee------------------cCCCCceEEEEcCC--------EEEEeccccCchhhcc
Confidence 012234456666643 2211 12389999999996 9999999997754432
Q ss_pred CCCCCCcccccccCCCCCCCCcCCCCCCCCCCCeeeccceeeChHHHHHHHHHHHHHhhh
Q 003057 403 PAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTNFEERWLKA 462 (852)
Q Consensus 403 ~~H~~~~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~ 462 (852)
..|.++. .++|++|.++...|.++|+..
T Consensus 336 -------------------------------~~e~~~~-~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 336 -------------------------------HAFVSFN-TIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred -------------------------------CCCeEEe-cCChhHHHHHHHHHHHHhCCc
Confidence 1233322 468999999999999999864
No 113
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.42 E-value=5.8e-13 Score=154.89 Aligned_cols=153 Identities=17% Similarity=0.239 Sum_probs=115.9
Q ss_pred CceeEEeecccccCCCccceeccCCcccCchhHHHHHHHHHHhccceEEEEEEecCceeEEEeCCCCchHHHHHHHHhhh
Q 003057 219 GGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQ 298 (852)
Q Consensus 219 g~~v~l~~dg~~~~~~~~~i~~~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a~ 298 (852)
.+.++++.+|+.. ....+++.++++|.+||++|+|++. |++.+ ..+.++|+.||+
T Consensus 328 ~~~~q~~~sgp~~---------------~~~~i~~~~l~~I~~A~~~I~I~tp------Yf~pd----~~l~~aL~~Aa~ 382 (509)
T PRK12452 328 EGAVQIVASGPSS---------------DDKSIRNTLLAVMGSAKKSIWIATP------YFIPD----QETLTLLRLSAI 382 (509)
T ss_pred CeEEEEEeCCCCc---------------hhHHHHHHHHHHHHHhhhEEEEECC------ccCCC----HHHHHHHHHHHH
Confidence 3578999988631 1235789999999999999999984 24444 689999999999
Q ss_pred cCCeEEEEEeCCCccccccccccccccCCCcHHHHhhhcCCCeEEEeccCCCCCCCcccccccccccccCcccEEEEecC
Q 003057 299 EGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDAD 378 (852)
Q Consensus 299 rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~ 378 (852)
|||+||||+ +....... ...........|.+.||++..+++ ...|+|++|||++
T Consensus 383 rGV~Vrii~-p~~~D~~~--------~~~a~~~~~~~L~~aGv~I~~y~~-----------------~~lHaK~~ivD~~ 436 (509)
T PRK12452 383 SGIDVRILY-PGKSDSII--------SDQASQSYFTPLLKAGASIYSYKD-----------------GFMHAKIVLVDDK 436 (509)
T ss_pred cCCEEEEEc-CCCCChHH--------HHHHHHHHHHHHHHcCCEEEEecC-----------------CCeeeeEEEECCC
Confidence 999999997 65432110 001122334556778999987643 2589999999997
Q ss_pred CCCCcccEEEEEcccccCCCccCCCCCCCCcccccccCCCCCCCCcCCCCCCCCCCCeeeccceeeChHHHHHHHHHHHH
Q 003057 379 AGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTNFEER 458 (852)
Q Consensus 379 ~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa~dl~~~F~~r 458 (852)
++++||.|+....+ +..|.+..+..+++.|.++...|.++
T Consensus 437 --------~a~vGS~Nld~RS~--------------------------------~~n~E~~~~i~~~~~~~~l~~~f~~d 476 (509)
T PRK12452 437 --------IATIGTANMDVRSF--------------------------------ELNYEIISVLYESETVHDIKRDFEDD 476 (509)
T ss_pred --------EEEEeCcccCHhHh--------------------------------hhhhhccEEEECHHHHHHHHHHHHHH
Confidence 99999999977432 13577888888999999999999999
Q ss_pred Hhhh
Q 003057 459 WLKA 462 (852)
Q Consensus 459 W~~~ 462 (852)
|..+
T Consensus 477 ~~~s 480 (509)
T PRK12452 477 FKHS 480 (509)
T ss_pred HHhC
Confidence 9875
No 114
>PRK13912 nuclease NucT; Provisional
Probab=99.40 E-value=6.2e-12 Score=126.60 Aligned_cols=140 Identities=19% Similarity=0.239 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHhccceEEEEEEecCceeEEEeCCCCchHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccccCCCc
Q 003057 250 SCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTND 329 (852)
Q Consensus 250 ~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~ 329 (852)
++++.++++|++|+++|+|+.| .+.+ ..+.++|.+|++|||+|+||+ |..++... .
T Consensus 33 ~~~~~l~~~I~~Ak~sI~i~~Y-------~~~~----~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~------------~ 88 (177)
T PRK13912 33 DALNKLVSLISNARSSIKIAIY-------SFTH----KDIAKALKSAAKRGVKISIIY-DYESNHNN------------D 88 (177)
T ss_pred HHHHHHHHHHHhcccEEEEEEE-------EEch----HHHHHHHHHHHHCCCEEEEEE-eCccccCc------------c
Confidence 5688999999999999999998 3433 679999999999999999996 87543211 0
Q ss_pred HHHHhhh-cCCCeEEEeccCCCCCCCcccccccccccccCcccEEEEecCCCCCcccEEEEEcccccCCCccCCCCCCCC
Q 003057 330 EETRRFF-KHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLF 408 (852)
Q Consensus 330 ~~~~~~~-~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~ 408 (852)
.....++ +.+++++........... .....+|+|++|||++ ++|+||.|++...+..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~H~K~~viD~~--------~~~iGS~N~t~~s~~~------ 146 (177)
T PRK13912 89 QSTIGYLDKYPNIKVCLLKGLKAKNG--------KYYGIMHQKVAIIDDK--------IVVLGSANWSKNAFEN------ 146 (177)
T ss_pred hhHHHHHHhCCCceEEEecCccccCc--------ccccccceeEEEEcCC--------EEEEeCCCCChhHhcc------
Confidence 1111222 235666665422111000 1124699999999996 9999999998754421
Q ss_pred cccccccCCCCCCCCcCCCCCCCCCCCeeeccceeeChH-HHHHHHHHHHHHhhh
Q 003057 409 KTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPA-AYDILTNFEERWLKA 462 (852)
Q Consensus 409 ~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gpa-a~dl~~~F~~rW~~~ 462 (852)
=+++.+.++.|. +.++.+.|.+.|...
T Consensus 147 ---------------------------N~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 147 ---------------------------NYEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred ---------------------------CCceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 135677788875 688999999999864
No 115
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.37 E-value=1.8e-12 Score=119.98 Aligned_cols=87 Identities=26% Similarity=0.421 Sum_probs=72.2
Q ss_pred EEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCE-----EEeeeeeecCCCCCeeeeEE
Q 003057 45 IWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGA-----VIGRTFVISNSESPVWMQHF 119 (852)
Q Consensus 45 v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~-----~~~rT~vi~~t~nP~WnE~F 119 (852)
+-.++|++|+.+|. .+.+||||+|.+.+. ...||++++++.||+|| +|
T Consensus 4 ~~~i~a~~L~~~d~--------------------------~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f 56 (110)
T cd04047 4 ELQFSGKKLDKKDF--------------------------FGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PF 56 (110)
T ss_pred EEEEEeCCCCCCCC--------------------------CCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EE
Confidence 34579999998886 345899999998542 45799999999999999 79
Q ss_pred EEeecCC-----CcEEEEEEEecCCcC-CceeeeEEEeeeeecCC
Q 003057 120 NVPVAHS-----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSG 158 (852)
Q Consensus 120 ~~~v~~~-----~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g 158 (852)
.|++... ...|.|+|||++..+ +++||++.+++++|..+
T Consensus 57 ~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 57 TIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred EEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhcC
Confidence 9886432 468999999999887 89999999999999843
No 116
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.35 E-value=3.5e-12 Score=128.25 Aligned_cols=130 Identities=25% Similarity=0.319 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHhccceEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCCCCCCCCChh
Q 003057 543 MSIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMWPEGITTSPQ 622 (852)
Q Consensus 543 ~sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~peg~~~~~~ 622 (852)
.++.+.++++|++|++.|+|+++||.+.. .....++...|.++. ++|++|+|++...+....
T Consensus 20 ~~~~~~i~~~I~~A~~~I~i~~~~~~~~~------------~~~~~~l~~~L~~a~--~rGv~V~il~~~~~~~~~---- 81 (176)
T cd00138 20 RSDLDALLEAISNAKKSIYIASFYLSPLI------------TEYGPVILDALLAAA--RRGVKVRILVDEWSNTDL---- 81 (176)
T ss_pred chHHHHHHHHHHhhheEEEEEEeEecccc------------cccchHHHHHHHHHH--HCCCEEEEEEcccccCCc----
Confidence 47899999999999999999999998631 000235666676664 569999999988654210
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHc---CCCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchHHHhhccCeee
Q 003057 623 IQRILYWQHKTMQMMYETIYKALVES---GLQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQALAKKNRRFQ 699 (852)
Q Consensus 623 ~~~i~~~~~~t~~~~~~~~~~~L~~~---Gv~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (852)
. ....+...|... |+++.. +..... ..
T Consensus 82 -~------------~~~~~~~~l~~~~~~~i~~~~----------~~~~~~---------------------------~~ 111 (176)
T cd00138 82 -K------------ISSAYLDSLRALLDIGVRVFL----------IRTDKT---------------------------YG 111 (176)
T ss_pred -h------------HHHHHHHHHHHhhcCceEEEE----------EcCCcc---------------------------cc
Confidence 0 011234455544 444321 100000 12
Q ss_pred EEEEeeEEEEeceEEEEeccCCCCCCcCCCCCCceEEEeecCc
Q 003057 700 IYIHSKGMIVDDEYVIIGSANINQRSLEGTRDTEIAMGAYQPR 742 (852)
Q Consensus 700 iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~ 742 (852)
...|+|+||||++.+++||+|++.+|+. .|.|+++.+.+++
T Consensus 112 ~~~H~K~~iiD~~~~~vGS~N~~~~~~~--~~~e~~~~~~~~~ 152 (176)
T cd00138 112 GVLHTKLVIVDDETAYIGSANLDGRSLT--LNSEVGVVIYDPA 152 (176)
T ss_pred cceeeeEEEEcCCEEEEECCcCChhhhh--hhcceEEEEeChH
Confidence 4899999999999999999999999998 7999999999885
No 117
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.35 E-value=1.3e-12 Score=147.54 Aligned_cols=123 Identities=24% Similarity=0.304 Sum_probs=109.5
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~ 120 (852)
..|.|+|.|||||+..+. .|++||||+|.|++..+.||.++.+++.|.|.|.|+
T Consensus 5 ~sl~vki~E~knL~~~~~--------------------------~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~ 58 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGP--------------------------SGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFY 58 (800)
T ss_pred cceeEEEeecccCCCCCC--------------------------CCCcCcceEEeecchhhhhhhhhhhhcCCccccceE
Confidence 579999999999998765 577999999999999999999999999999999999
Q ss_pred EeecCCCcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecc--cCCCCCCCCCceeeeeEEeeccccc
Q 003057 121 VPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL--NSSRKPCKAGAVLSLSIQYTPVENM 193 (852)
Q Consensus 121 ~~v~~~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~--~~~~~~~~~~g~I~l~l~f~p~~~~ 193 (852)
+.++..-..|.|.|||.| ++ |+.||++.|.-++|..-+..+.||.|. +++. +..|+||+.+++.+....
T Consensus 59 ~~iP~~F~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~ds---EVQG~v~l~l~~~e~~~~ 130 (800)
T KOG2059|consen 59 FEIPRTFRYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDS---EVQGKVHLELALTEAIQS 130 (800)
T ss_pred EecCcceeeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceeccccCCCh---hhceeEEEEEEeccccCC
Confidence 999877799999999999 66 999999999999999878899999994 3444 456999999999887663
No 118
>PRK13912 nuclease NucT; Provisional
Probab=99.30 E-value=8e-12 Score=125.83 Aligned_cols=126 Identities=20% Similarity=0.197 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhccceEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCCCCCCCCChhh
Q 003057 544 SIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMWPEGITTSPQI 623 (852)
Q Consensus 544 sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~peg~~~~~~~ 623 (852)
.+...++++|++|++.|+|+. |+++. .++..+|.++ +++|++|+|+++...... ..
T Consensus 33 ~~~~~l~~~I~~Ak~sI~i~~-Y~~~~-----------------~~i~~aL~~A--a~RGV~VrIlld~~~~~~----~~ 88 (177)
T PRK13912 33 DALNKLVSLISNARSSIKIAI-YSFTH-----------------KDIAKALKSA--AKRGVKISIIYDYESNHN----ND 88 (177)
T ss_pred HHHHHHHHHHHhcccEEEEEE-EEEch-----------------HHHHHHHHHH--HHCCCEEEEEEeCccccC----cc
Confidence 577889999999999999997 55543 2466666655 369999999999754311 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchHHHhhccCeeeEEE
Q 003057 624 QRILYWQHKTMQMMYETIYKALVE-SGLQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQALAKKNRRFQIYI 702 (852)
Q Consensus 624 ~~i~~~~~~t~~~~~~~~~~~L~~-~Gv~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv 702 (852)
... ...|.+ .+++... +..+.. . . .....++
T Consensus 89 ~~~---------------~~~l~~~~~~~~~~-------~~~~~~----~-~---------------------~~~~~~~ 120 (177)
T PRK13912 89 QST---------------IGYLDKYPNIKVCL-------LKGLKA----K-N---------------------GKYYGIM 120 (177)
T ss_pred hhH---------------HHHHHhCCCceEEE-------ecCccc----c-C---------------------ccccccc
Confidence 000 011111 1222210 000000 0 0 0011378
Q ss_pred EeeEEEEeceEEEEeccCCCCCCcCCCCCCceEEEeecCcc
Q 003057 703 HSKGMIVDDEYVIIGSANINQRSLEGTRDTEIAMGAYQPRH 743 (852)
Q Consensus 703 HSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~ 743 (852)
|+|+||||++++++||+||+.+|+. .|.|+++++.||+.
T Consensus 121 H~K~~viD~~~~~iGS~N~t~~s~~--~N~E~~lii~d~~~ 159 (177)
T PRK13912 121 HQKVAIIDDKIVVLGSANWSKNAFE--NNYEVLLITDDTET 159 (177)
T ss_pred ceeEEEEcCCEEEEeCCCCChhHhc--cCCceEEEECCHHH
Confidence 9999999999999999999999998 89999999998863
No 119
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.29 E-value=1.1e-11 Score=108.08 Aligned_cols=81 Identities=35% Similarity=0.609 Sum_probs=68.8
Q ss_pred EEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCE--EEeeeeeecCCCCCeeeeEEE
Q 003057 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGA--VIGRTFVISNSESPVWMQHFN 120 (852)
Q Consensus 43 L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~--~~~rT~vi~~t~nP~WnE~F~ 120 (852)
|+|+|++|++|+..+. .+..||||+|.+.+. ...+|+++.++.+|.|||+|.
T Consensus 1 L~v~I~~a~~L~~~~~--------------------------~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~ 54 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDS--------------------------NGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFE 54 (85)
T ss_dssp EEEEEEEEESSSSSST--------------------------TSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEE
T ss_pred CEEEEEEEECCCCccc--------------------------CCcccccceeecceeeeeeeeeeeeeccccceeeeeee
Confidence 7999999999998664 445899999999762 335999999999999999999
Q ss_pred EeecCC-CcEEEEEEEecCCcC-CceeeeEE
Q 003057 121 VPVAHS-AAEVHFVVKDNDFVG-SQIMGAVG 149 (852)
Q Consensus 121 ~~v~~~-~~~l~~~V~D~d~~~-~~~iG~~~ 149 (852)
|++... ...|.|.|+|.+..+ +++||++.
T Consensus 55 ~~~~~~~~~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 55 FPLDDPDLDSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp EEESHGCGTEEEEEEEEETSSSSEEEEEEEE
T ss_pred eeeecccccceEEEEEECCCCCCCCEEEEEC
Confidence 996544 367999999999888 88999874
No 120
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.26 E-value=1.6e-11 Score=146.15 Aligned_cols=131 Identities=23% Similarity=0.393 Sum_probs=107.5
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~ 120 (852)
|+|.|+|.+|++|...|.+- .++.|||+++.+.+...|||++.+|+.||+|||+|.
T Consensus 436 GVv~vkI~sa~~lk~~d~~i------------------------~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Y 491 (1227)
T COG5038 436 GVVEVKIKSAEGLKKSDSTI------------------------NGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFY 491 (1227)
T ss_pred EEEEEEEeeccCcccccccc------------------------cCCCCceEEEEeccccCCccceeeccCCccccceEE
Confidence 99999999999999776311 577999999999998899999999999999999999
Q ss_pred EeecCCCcEEEEEEEecCCc-CCceeeeEEEeeeeecCCCeeee-eeecccCCCCCCCCCceeeeeEEeecccccccccc
Q 003057 121 VPVAHSAAEVHFVVKDNDFV-GSQIMGAVGIPVEKLCSGDKIEG-AFPILNSSRKPCKAGAVLSLSIQYTPVENMSLYYR 198 (852)
Q Consensus 121 ~~v~~~~~~l~~~V~D~d~~-~~~~iG~~~i~l~~l~~g~~~~~-w~~L~~~~~~~~~~~g~I~l~l~f~p~~~~~~~~~ 198 (852)
+++....+.|.+.|||.+.. +|+++|.+.++|..|...+.... -+.++ .+.++. |.|++.++|.|......-..
T Consensus 492 i~lns~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~-~~~k~v---GrL~yDl~ffp~~e~k~~~~ 567 (1227)
T COG5038 492 ILLNSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL-RNTKNV---GRLTYDLRFFPVIEDKKELK 567 (1227)
T ss_pred EEecccCCceeEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-ccCccc---eEEEEeeeeecccCCccccc
Confidence 99998889999999995544 58999999999988875443332 44443 345544 99999999999877665444
Q ss_pred c
Q 003057 199 G 199 (852)
Q Consensus 199 g 199 (852)
|
T Consensus 568 ~ 568 (1227)
T COG5038 568 G 568 (1227)
T ss_pred c
Confidence 4
No 121
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=99.25 E-value=7.7e-09 Score=112.42 Aligned_cols=174 Identities=17% Similarity=0.149 Sum_probs=103.4
Q ss_pred cccCceeEEeecccccCCCccceeccCCcccCchhHHHHHHHHHHhccceEEEEEEe--cCceeEEEeCCC---CchHHH
Q 003057 216 LRRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWS--VYHTVRLVRDGS---NTLMLG 290 (852)
Q Consensus 216 ~~~g~~v~l~~dg~~~~~~~~~i~~~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~--~~p~~~l~r~~~---~~~~l~ 290 (852)
...-|++.++.+=+. .+...++... -..+++.++.|++|+++++|..|. +.-. ++--++. .|..+.
T Consensus 46 c~~~C~~~vvESIP~------gl~f~~~t~~--~sT~eaW~~Ll~sA~~eldIas~ywsL~~~-d~~~~dsSt~~G~~vy 116 (456)
T KOG3603|consen 46 CGDTCKLVLVESIPA------GLTFPDASPF--LSTKEAWLELLSTAQEELDIASFYWSLTGK-DTGVVDSSTQYGEQVY 116 (456)
T ss_pred hcCceeEEEEecccc------cCcCcccCCC--ccHHHHHHHHhhccceEEEEEEEeeccccc-eeccCCCcchHHHHHH
Confidence 344577777765321 1122223222 124688899999999999997652 2111 1100111 368899
Q ss_pred HHHHHhhhcCCeEEEEEeCCCccccccccccccccCCCcHHHHhhhcCCC-eEEEeccCCCCCCCcccccccccccccCc
Q 003057 291 DLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSS-VQVLLCPRSAGKGHSFVKKQEVGTIYTHH 369 (852)
Q Consensus 291 ~lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~~~p~~~~~~~~~~~~~~~~~~~~hH 369 (852)
..|.+++.+||.|||.. +.+.... + ......|...| ++++--+.. .|. + -.-.|
T Consensus 117 ~~L~~~~~~gIsiriA~-~~p~~~~-~------------~~d~~~Le~~Gaa~vr~id~~-----~l~-----g-~GvlH 171 (456)
T KOG3603|consen 117 NTLLALAKSGVKIRIAQ-SYPSGGP-P------------NADLQVLESLGLAQVRSIDMN-----RLT-----G-GGVLH 171 (456)
T ss_pred HHHHHhccCCeEEEEEe-ecCCCCC-C------------cccHHHHHhCCCceEEeeccc-----ccc-----c-CceEE
Confidence 99999999999999986 4432111 1 01123345555 666543211 111 0 23689
Q ss_pred ccEEEEecCCCCCcccEEEEEcccccCCCccCCCCCCCCcccccccCCCCCCCCcCCCCCCCCCCCeeeccceeeC--hH
Q 003057 370 QKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDG--PA 447 (852)
Q Consensus 370 qK~vVVD~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~G--pa 447 (852)
-|+.|||++ .-|+||.|+...-. | .-..+++.+.- -.
T Consensus 172 tKf~vvD~k--------hfylGSaNfDWrSl-T--------------------------------qvkElGv~v~NCpcl 210 (456)
T KOG3603|consen 172 TKFWVVDIK--------HFYLGSANFDWRSL-T--------------------------------QVKELGVVVRNCPCL 210 (456)
T ss_pred EEEEEEecc--------eEEEeccccchhhc-c--------------------------------ceeEeeeEEecChhH
Confidence 999999996 89999999876311 1 11233333322 26
Q ss_pred HHHHHHHHHHHHhhhcC
Q 003057 448 AYDILTNFEERWLKASK 464 (852)
Q Consensus 448 a~dl~~~F~~rW~~~~~ 464 (852)
+.||.+.|.+.|.....
T Consensus 211 akDL~kiFe~yW~lg~~ 227 (456)
T KOG3603|consen 211 AKDLKKIFERYWYLGNA 227 (456)
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 99999999999997543
No 122
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.22 E-value=3.3e-11 Score=114.10 Aligned_cols=113 Identities=23% Similarity=0.368 Sum_probs=73.7
Q ss_pred HHHHHHhccceEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCCCCCCCCChhhHHHHH
Q 003057 549 YVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMWPEGITTSPQIQRILY 628 (852)
Q Consensus 549 yl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~peg~~~~~~~~~i~~ 628 (852)
++++|.+|++.|+|.++||... .+...+..+ +.+|++|+|++......... .. .
T Consensus 1 l~~~i~~A~~~i~i~~~~~~~~------------------~i~~~l~~~--~~~gv~v~ii~~~~~~~~~~-~~-~---- 54 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYITDP------------------DIIKALLDA--AKRGVKVRIIVDSNQDDSEA-IN-L---- 54 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-SC------------------HHHHHHHHH--HHTT-EEEEEEECGGGHHCC-CS-H----
T ss_pred CHHHHhccCCEEEEEEEecCcH------------------HHHHHHHHH--HHCCCeEEEEECCCccccch-hh-h----
Confidence 4689999999999999999533 244444442 46899999999874320000 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchHHHhhccCeeeEEEEeeEEE
Q 003057 629 WQHKTMQMMYETIYKALVESGLQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQALAKKNRRFQIYIHSKGMI 708 (852)
Q Consensus 629 ~~~~t~~~~~~~~~~~L~~~Gv~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmI 708 (852)
.....+.+.+...|++++ .++|+|++|
T Consensus 55 -------~~~~~~~~~~~~~~i~v~----------------------------------------------~~~H~K~~i 81 (126)
T PF13091_consen 55 -------ASLKELRELLKNAGIEVR----------------------------------------------NRLHAKFYI 81 (126)
T ss_dssp -------HHHHHHHHHHHHTTHCEE----------------------------------------------S-B--EEEE
T ss_pred -------HHHHHHHhhhccceEEEe----------------------------------------------cCCCcceEE
Confidence 011133444466776542 179999999
Q ss_pred EeceEEEEeccCCCCCCcCCCCCCceEEEeecCc
Q 003057 709 VDDEYVIIGSANINQRSLEGTRDTEIAMGAYQPR 742 (852)
Q Consensus 709 VDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~ 742 (852)
+||+++++||+|++.+|+. .|.|+++.+.++.
T Consensus 82 ~d~~~~iiGS~N~t~~~~~--~n~E~~~~~~~~~ 113 (126)
T PF13091_consen 82 IDDKVAIIGSANLTSSSFR--RNYELGVIIDDPE 113 (126)
T ss_dssp ETTTEEEEES--CSCCCSC--TSEEEEEEEECHH
T ss_pred ecCccEEEcCCCCCcchhc--CCcceEEEEECHH
Confidence 9999999999999999997 8999999999875
No 123
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=1.7e-11 Score=139.03 Aligned_cols=113 Identities=28% Similarity=0.425 Sum_probs=93.0
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--C--EEEeeeeeecCCCCCee
Q 003057 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--G--AVIGRTFVISNSESPVW 115 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~--~~~~rT~vi~~t~nP~W 115 (852)
+|.|+|.|++|++|+.++. .+.+||||++.+- . .+..||.+.+++.||+|
T Consensus 297 ~g~ltv~v~kar~L~~~~~--------------------------~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~ 350 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDV--------------------------GGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVF 350 (421)
T ss_pred CCeEEEEEEEecCCCcccC--------------------------CCCCCccEEEEEecCCceeeeeeeecccCCCCCcc
Confidence 5999999999999999886 6779999999992 2 33458999999999999
Q ss_pred eeEEEEeecCCC---cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCce
Q 003057 116 MQHFNVPVAHSA---AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAV 180 (852)
Q Consensus 116 nE~F~~~v~~~~---~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~ 180 (852)
||+|.|.|+... ..|.|+|+|+|.++ +++||.+.+.... +|....+|.+++...++|+..+..
T Consensus 351 nesf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~pv~~wh~ 417 (421)
T KOG1028|consen 351 NETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRKPVAQWHS 417 (421)
T ss_pred cccEEEeCCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCccCceeeeEe
Confidence 999999886432 56899999999998 7799988887653 566788999999888887744433
No 124
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.21 E-value=6e-11 Score=105.74 Aligned_cols=99 Identities=37% Similarity=0.569 Sum_probs=84.0
Q ss_pred EEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEe
Q 003057 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (852)
Q Consensus 43 L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~~ 122 (852)
|.|.|++|++|+.... ....+|||++.+.....++|+++.++.||.|||.|.++
T Consensus 1 l~v~i~~~~~l~~~~~--------------------------~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~ 54 (102)
T cd00030 1 LRVTVIEARNLPAKDL--------------------------NGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFP 54 (102)
T ss_pred CEEEEEeeeCCCCcCC--------------------------CCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEE
Confidence 5799999999986532 34589999999998555699999999999999999999
Q ss_pred ecC-CCcEEEEEEEecCCcC-CceeeeEEEeeeeec-CCCeeeeeeec
Q 003057 123 VAH-SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLC-SGDKIEGAFPI 167 (852)
Q Consensus 123 v~~-~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~-~g~~~~~w~~L 167 (852)
+.. ....+.|.|++.+..+ ..+||++.+++.++. .......|++|
T Consensus 55 ~~~~~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 55 VLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred ccCCCCCEEEEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 987 5678999999988776 789999999999988 66667778765
No 125
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.20 E-value=9.8e-11 Score=104.87 Aligned_cols=93 Identities=38% Similarity=0.592 Sum_probs=79.3
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCE--EEeeeeeecCCCCCeeeeEE
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGA--VIGRTFVISNSESPVWMQHF 119 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~--~~~rT~vi~~t~nP~WnE~F 119 (852)
+|.|+|++|++|...+. ....+|||++.+... ..++|+++.++.||.|||.|
T Consensus 1 ~l~i~i~~~~~l~~~~~--------------------------~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~ 54 (101)
T smart00239 1 TLTVKIISARNLPKKDK--------------------------KGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETF 54 (101)
T ss_pred CeEEEEEEeeCCCCCCC--------------------------CCCCCceEEEEEeCCccceEeeeEecCCCCCcccceE
Confidence 37899999999986542 234799999999876 56799999999999999999
Q ss_pred EEeecCC-CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCe
Q 003057 120 NVPVAHS-AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDK 160 (852)
Q Consensus 120 ~~~v~~~-~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~ 160 (852)
.|++... .+.|.|+|+|.+..+ +.+||.+.+++.++..+..
T Consensus 55 ~~~~~~~~~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 55 EFEVPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred EEEecCcccCEEEEEEEecCCccCCceeEEEEEEHHHcccCcc
Confidence 9999887 689999999988776 7899999999998886543
No 126
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.19 E-value=4.1e-11 Score=142.75 Aligned_cols=133 Identities=21% Similarity=0.347 Sum_probs=108.2
Q ss_pred CCCCceeeeeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecC
Q 003057 30 HQGSLKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISN 109 (852)
Q Consensus 30 ~~~~~~~~~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~ 109 (852)
...+..++-..|.|+|.+..|.||++.|. +|.+||||.+.+.+.++.||+++++
T Consensus 1029 ~l~~~emv~nsG~l~I~~~~~~nl~~~d~--------------------------ng~sDpfv~~~ln~k~vyktkv~Kk 1082 (1227)
T COG5038 1029 KLPPVEMVENSGYLTIMLRSGENLPSSDE--------------------------NGYSDPFVKLFLNEKSVYKTKVVKK 1082 (1227)
T ss_pred ccCcceeecccCcEEEEEeccCCCccccc--------------------------CCCCCceEEEEecceecccccchhc
Confidence 44445556668999999999999998875 7889999999999998889999999
Q ss_pred CCCCeeeeEEEEeecCCC-cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEe
Q 003057 110 SESPVWMQHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (852)
Q Consensus 110 t~nP~WnE~F~~~v~~~~-~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f 187 (852)
++||+|||.|.++|.... ..+++.|+|+|... ++.||++.++|+.+..+.....-.+|.++. ....+|.++....|
T Consensus 1083 tlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~--~~~~~g~~~~~~~~ 1160 (1227)
T COG5038 1083 TLNPVWNEEFTIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT--FIVLDGTLHPGFNF 1160 (1227)
T ss_pred cCCCCccccceEeeeccccceEEEEEeecccCCCccccccccccHhhcCcCCccceeeeccCcc--eEecccEeecceec
Confidence 999999999999998555 77999999999877 889999999999998776655445553322 22456777777776
Q ss_pred ecc
Q 003057 188 TPV 190 (852)
Q Consensus 188 ~p~ 190 (852)
.+.
T Consensus 1161 r~~ 1163 (1227)
T COG5038 1161 RSK 1163 (1227)
T ss_pred chh
Confidence 654
No 127
>PLN02223 phosphoinositide phospholipase C
Probab=99.18 E-value=1.5e-10 Score=131.52 Aligned_cols=122 Identities=25% Similarity=0.416 Sum_probs=92.4
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCee
Q 003057 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVW 115 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~----~~~~rT~vi~~t~nP~W 115 (852)
..+|.|+|+.|.+++ .+. .++ .......||||+|.+.+ ....||++..|+.||+|
T Consensus 408 ~~~L~V~Visgq~~~-~~~-~k~-------------------~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvW 466 (537)
T PLN02223 408 VKILKVKIYMGDGWI-VDF-KKR-------------------IGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTW 466 (537)
T ss_pred ceEEEEEEEEccccc-CCc-ccc-------------------cCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCcee
Confidence 368999999999886 221 000 00012369999999954 22348888888999999
Q ss_pred eeEEEEeecCCC-cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEE
Q 003057 116 MQHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQ 186 (852)
Q Consensus 116 nE~F~~~v~~~~-~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~ 186 (852)
||+|.|++..+. ..|+|.|+|+|..+ ++++|++.+|++.|..|- ++++|.+.+|++.+. .+|.+.++
T Consensus 467 ne~F~F~i~~PELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~~~g~~l~~-~~Ll~~f~ 535 (537)
T PLN02223 467 GEEFTFPLTYPDLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI---RAVPLYDERGKACSS-TMLLTRFK 535 (537)
T ss_pred cceeEEEEEccCceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc---eeEeccCCCcCCCCC-ceEEEEEE
Confidence 999999987666 67999999999865 889999999999999886 688999999987632 45444444
No 128
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.13 E-value=2.7e-10 Score=132.42 Aligned_cols=152 Identities=22% Similarity=0.208 Sum_probs=110.1
Q ss_pred CceeEEeecccccCCCccceeccCCcccCchhHHHHHHHHHHhccceEEEEEEecCceeEEEeCCCCchHHHHHHHHhhh
Q 003057 219 GGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQ 298 (852)
Q Consensus 219 g~~v~l~~dg~~~~~~~~~i~~~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a~ 298 (852)
++.++++.+|+. +....+.+.+.++|.+||++|+|++- |++.+ ..+.++|+.||+
T Consensus 302 ~~~~qi~~sgP~---------------~~~~~~~~~~~~~I~~A~~~I~I~tp------Yfip~----~~i~~aL~~Aa~ 356 (483)
T PRK01642 302 GHTVQVIASGPG---------------DPEETIHQFLLTAIYSARERLWITTP------YFVPD----EDLLAALKTAAL 356 (483)
T ss_pred CceEEEEeCCCC---------------ChhhHHHHHHHHHHHHhccEEEEEcC------CcCCC----HHHHHHHHHHHH
Confidence 467899988863 11124678899999999999999973 14433 689999999999
Q ss_pred cCCeEEEEEeCCCccccccccccccccCCCcHHHHhhhcCCCeEEEeccCCCCCCCcccccccccccccCcccEEEEecC
Q 003057 299 EGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDAD 378 (852)
Q Consensus 299 rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~ 378 (852)
|||+|+||+ +....... .........+.+.+.||++..+.+ ...|.|++|||++
T Consensus 357 rGV~Vril~-p~~~d~~~--------~~~~~~~~~~~L~~~Gv~I~~y~~-----------------~~~HaK~~ivD~~ 410 (483)
T PRK01642 357 RGVDVRIII-PSKNDSLL--------VFWASRAFFTELLEAGVKIYRYEG-----------------GLLHTKSVLVDDE 410 (483)
T ss_pred cCCEEEEEe-CCCCCcHH--------HHHHHHHHHHHHHHcCCEEEEeCC-----------------CceEeEEEEECCC
Confidence 999999997 65332111 001112234456678999987632 1489999999996
Q ss_pred CCCCcccEEEEEcccccCCCccCCCCCCCCcccccccCCCCCCCCcCCCCCCCCCCCeeeccceeeCh-HHHHHHHHHHH
Q 003057 379 AGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGP-AAYDILTNFEE 457 (852)
Q Consensus 379 ~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gp-aa~dl~~~F~~ 457 (852)
++++|+.|+....+. -=+++.+.+.+| .+.++.+.|.+
T Consensus 411 --------~~~vGS~N~d~rS~~---------------------------------~N~E~~~~i~d~~~~~~l~~~f~~ 449 (483)
T PRK01642 411 --------LALVGTVNLDMRSFW---------------------------------LNFEITLVIDDTGFAADLAAMQED 449 (483)
T ss_pred --------EEEeeCCcCCHhHHh---------------------------------hhhcceEEEECHHHHHHHHHHHHH
Confidence 999999998653221 114778889997 58899999999
Q ss_pred HHhhh
Q 003057 458 RWLKA 462 (852)
Q Consensus 458 rW~~~ 462 (852)
+|...
T Consensus 450 d~~~s 454 (483)
T PRK01642 450 YFARS 454 (483)
T ss_pred HHHhC
Confidence 99764
No 129
>PLN02952 phosphoinositide phospholipase C
Probab=99.11 E-value=4.9e-10 Score=129.97 Aligned_cols=122 Identities=19% Similarity=0.320 Sum_probs=92.1
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCee
Q 003057 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVW 115 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~----~~~~rT~vi~~t~nP~W 115 (852)
..+|.|+|+.|.+|+-. . +... + ......||||+|.+-+ ....||+++.|+.||+|
T Consensus 469 ~~~L~V~VisGq~l~lp-~-~~~~---~---------------~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvW 528 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLD-F-SHTH---F---------------DSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAW 528 (599)
T ss_pred cceEEEEEEECcccCCC-C-cccc---C---------------CccCCCCceEEEEEeccCCCCcceeeeeccCCCCccc
Confidence 36899999999988631 1 1000 0 0012259999999954 22339999999999999
Q ss_pred eeEEEEeecCCC-cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEe
Q 003057 116 MQHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (852)
Q Consensus 116 nE~F~~~v~~~~-~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f 187 (852)
||+|.|++..+. ..|.|.|+|+|..+ ++++|++.|||+.|..|. +|++|.+..|++. +.++|.++|
T Consensus 529 nE~F~F~i~~PELAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~~G~~l---~~a~Llv~f 596 (599)
T PLN02952 529 NEEFSFPLTVPELALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDKKGEKL---KNVRLLMRF 596 (599)
T ss_pred CCeeEEEEEcCCccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCCCCCCC---CCEEEEEEE
Confidence 999999876654 67999999999876 889999999999999886 6999999999876 344555544
No 130
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.11 E-value=3.5e-10 Score=107.04 Aligned_cols=124 Identities=23% Similarity=0.401 Sum_probs=84.6
Q ss_pred HHHHHHhccceEEEEEEecCceeEEEeCCCCchHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccccC-CCcHHHH
Q 003057 255 VYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMS-TNDEETR 333 (852)
Q Consensus 255 l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~~~-~~~~~~~ 333 (852)
+.++|++|+++|+|+.+.+. ...|.++|..++++||+|+|++ +...... +... .......
T Consensus 1 l~~~i~~A~~~i~i~~~~~~-----------~~~i~~~l~~~~~~gv~v~ii~-~~~~~~~-------~~~~~~~~~~~~ 61 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYIT-----------DPDIIKALLDAAKRGVKVRIIV-DSNQDDS-------EAINLASLKELR 61 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS------------SCHHHHHHHHHHHTT-EEEEEE-ECGGGHH-------CCCSHHHHHHHH
T ss_pred CHHHHhccCCEEEEEEEecC-----------cHHHHHHHHHHHHCCCeEEEEE-CCCcccc-------chhhhHHHHHHH
Confidence 57899999999999998552 2578999999999999999998 5432100 0000 0012233
Q ss_pred hhhcCCCeEEEeccCCCCCCCcccccccccccccCcccEEEEecCCCCCcccEEEEEcccccCCCccCCCCCCCCccccc
Q 003057 334 RFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLET 413 (852)
Q Consensus 334 ~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~~~~~~ 413 (852)
+.+...|+++. .+.|.|++|||++ ++++|+.|++...|.
T Consensus 62 ~~~~~~~i~v~---------------------~~~H~K~~i~d~~--------~~iiGS~N~t~~~~~------------ 100 (126)
T PF13091_consen 62 ELLKNAGIEVR---------------------NRLHAKFYIIDDK--------VAIIGSANLTSSSFR------------ 100 (126)
T ss_dssp HHHHHTTHCEE---------------------S-B--EEEEETTT--------EEEEES--CSCCCSC------------
T ss_pred hhhccceEEEe---------------------cCCCcceEEecCc--------cEEEcCCCCCcchhc------------
Confidence 44466777765 1699999999986 999999999886541
Q ss_pred ccCCCCCCCCcCCCCCCCCCCCeeeccceeeChH-HHHHHHHHHHHH
Q 003057 414 VHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPA-AYDILTNFEERW 459 (852)
Q Consensus 414 ~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gpa-a~dl~~~F~~rW 459 (852)
..++..+.+++|. +.++.+.|.+.|
T Consensus 101 ---------------------~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 101 ---------------------RNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp ---------------------TSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred ---------------------CCcceEEEEECHHHHHHHHHHHhccC
Confidence 2468999999996 899999999888
No 131
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.03 E-value=1.2e-09 Score=126.54 Aligned_cols=123 Identities=22% Similarity=0.332 Sum_probs=92.7
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeee
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVWM 116 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~----~~~~rT~vi~~t~nP~Wn 116 (852)
.+|.|+|+.+.+++.... +. -+ .+-...||||+|.+-+ ....||+++.|+.||+||
T Consensus 469 ~~L~V~VisGq~~~l~~~--k~---~~---------------~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wn 528 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFK--KT---HF---------------DSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWN 528 (598)
T ss_pred cEEEEEEEEccCccCCCc--cc---cC---------------CCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccC
Confidence 689999999998753210 00 00 0012369999999943 223499999899999999
Q ss_pred eEEEEeecCCC-cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEe
Q 003057 117 QHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (852)
Q Consensus 117 E~F~~~v~~~~-~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f 187 (852)
|+|.|++.-+. ..|+|.|+|+|..+ +++||+..||++.|..|- +.++|.+..|.+.+ ..+|.+.++|
T Consensus 529 eef~F~l~vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 529 KEFIFPLAVPELALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGI---HAVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred CeeEEEEEcCceeEEEEEEEECCCCCCCCEEEEEEcchHHhhCcc---ceEeccCCCcCCCC-CCeeEEEEEe
Confidence 99999976665 78999999999865 899999999999999885 57899999998763 3455555544
No 132
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.01 E-value=8.4e-10 Score=98.54 Aligned_cols=87 Identities=18% Similarity=0.306 Sum_probs=71.4
Q ss_pred EEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEe
Q 003057 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (852)
Q Consensus 43 L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~~ 122 (852)
|+|+|..|+++...+... + .+..||||.|++++...+||++ +.||.|||.|.|+
T Consensus 1 L~I~V~~~RdvdH~~~~~-----~------------------~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~ 54 (109)
T cd08689 1 LTITITSARDVDHIASPR-----F------------------SKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIP 54 (109)
T ss_pred CEEEEEEEecCccccchh-----h------------------ccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEE
Confidence 689999999998665210 1 2347999999999987889988 6899999999999
Q ss_pred ecCCCcEEEEEEEecCCcCCceeeeEEEeeeeec
Q 003057 123 VAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLC 156 (852)
Q Consensus 123 v~~~~~~l~~~V~D~d~~~~~~iG~~~i~l~~l~ 156 (852)
+ +....++|+|||......-.||-.-+.+++|.
T Consensus 55 V-dk~nEiel~VyDk~~~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 55 V-EKNNEEEVIVYDKGGDQPVPVGLLWLRLSDIA 87 (109)
T ss_pred e-cCCcEEEEEEEeCCCCeecceeeehhhHHHHH
Confidence 9 46789999999985444568999989988887
No 133
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.01 E-value=1.5e-09 Score=103.06 Aligned_cols=95 Identities=21% Similarity=0.180 Sum_probs=75.9
Q ss_pred EEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeecCCCC--CeeeeE
Q 003057 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--AVIGRTFVISNSES--PVWMQH 118 (852)
Q Consensus 43 L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~--~~~~rT~vi~~t~n--P~WnE~ 118 (852)
|+|.|.+|++++.++..-. +...+||||++.|.+ ....+|.|..+++| |+||+.
T Consensus 2 LRViIw~~~~v~~~~~~~~----------------------g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwR 59 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNIT----------------------GEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWR 59 (133)
T ss_pred EEEEEEECcCCcccccccC----------------------CccccCeEEEEEEccCcccccccceEEecCCCCcEEeEE
Confidence 7999999999776543100 022489999999965 45569999999999 999999
Q ss_pred EEEeecCC------------------------CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCC
Q 003057 119 FNVPVAHS------------------------AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGD 159 (852)
Q Consensus 119 F~~~v~~~------------------------~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~ 159 (852)
|.|++... ...|.|.|||+|.++ +++||++.++|+.+..+.
T Consensus 60 fvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 60 FVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred EEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 99887651 256899999999988 899999999999887554
No 134
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.01 E-value=2.2e-09 Score=124.29 Aligned_cols=123 Identities=22% Similarity=0.355 Sum_probs=92.6
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCeee
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVWM 116 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~----~~~~rT~vi~~t~nP~Wn 116 (852)
.+|.|+|+.+.+++-.-. ... + .+....||||+|.+.+ ....||+++.++.||+||
T Consensus 452 ~~L~V~Visgq~~~l~~~-~~~----~---------------~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~ 511 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFR-HTH----F---------------DQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWD 511 (581)
T ss_pred ceEEEEEEEcccccCCCC-ccc----c---------------CCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccC
Confidence 689999999987531100 000 0 0122369999999953 233499999999999999
Q ss_pred eEEEEeecCCC-cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEe
Q 003057 117 QHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (852)
Q Consensus 117 E~F~~~v~~~~-~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f 187 (852)
|+|.|++..+. ..|+|.|+|+|..+ +++||++.+||+.|..|- +.++|.+..|.+.+ ...|.+.+.|
T Consensus 512 e~f~F~i~~PeLAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy---R~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 512 EVFEFPLTVPELALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGI---RAFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred CeeEEEEEcCceeEEEEEEEECCCCCCCcEEEEEEcchhhhhCcc---ceEEccCCCcCCCC-CeeEEEEEEe
Confidence 99999876665 78999999998765 889999999999999886 57899999998763 3566665554
No 135
>PLN02228 Phosphoinositide phospholipase C
Probab=98.96 E-value=4.5e-09 Score=121.40 Aligned_cols=125 Identities=22% Similarity=0.302 Sum_probs=94.5
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCee-
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVW- 115 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~----~~~~rT~vi~~t~nP~W- 115 (852)
.+|.|+|+.|.+|+-. .... ...+....||||+|.+.+ ....||+++.|+.||+|
T Consensus 431 ~~L~I~ViSGq~l~lp-~~~~-------------------~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~ 490 (567)
T PLN02228 431 TTLKVKIYTGEGWDLD-FHLT-------------------HFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWG 490 (567)
T ss_pred ceEEEEEEECCccCCC-CCCC-------------------CCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceEC
Confidence 5899999999987411 0000 000012379999999943 22249999999999999
Q ss_pred eeEEEEeecCCC-cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEeec
Q 003057 116 MQHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (852)
Q Consensus 116 nE~F~~~v~~~~-~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~p 189 (852)
||+|.|++..+. ..|+|.|+|.|..+ +++||++.|||+.|..|- +.++|++..|++.. .++|.+.+.+.+
T Consensus 491 ~e~f~F~~~~pELA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~~~~G~~l~-~atLfv~~~~~~ 562 (567)
T PLN02228 491 NDEFLFQLRVPELALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLHDRAGKAYK-NTRLLVSFALDP 562 (567)
T ss_pred CCeEEEEEEcCceeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe---eEEEccCCCCCCCC-CeEEEEEEEEcC
Confidence 999999987665 78999999998765 889999999999999875 57899999998763 467777777654
No 136
>PRK11263 cardiolipin synthase 2; Provisional
Probab=98.95 E-value=3.3e-09 Score=120.22 Aligned_cols=134 Identities=19% Similarity=0.195 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHhccceEEEEE-EecCceeEEEeCCCCchHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccccCCC
Q 003057 250 SCWQDVYDAINQARRLIYITG-WSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTN 328 (852)
Q Consensus 250 ~~~~~l~~aI~~Ak~~I~I~~-w~~~p~~~l~r~~~~~~~l~~lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~ 328 (852)
.+.+.++++|.+|+++|+|++ | ++.+ ..|.++|+.|++|||+|+||+ +....... ....
T Consensus 206 ~i~~~~~~~i~~A~~~I~I~tpY-------f~p~----~~l~~aL~~Aa~RGV~V~ii~-~~~~d~~~--------~~~a 265 (411)
T PRK11263 206 DIERHYLKALRQARREVIIANAY-------FFPG----YRLLRALRNAARRGVRVRLIL-QGEPDMPI--------VRVG 265 (411)
T ss_pred HHHHHHHHHHHHhceEEEEEecC-------cCCC----HHHHHHHHHHHHCCCEEEEEe-CCCCCcHH--------HHHH
Confidence 457889999999999999986 4 4443 789999999999999999998 65432211 1111
Q ss_pred cHHHHhhhcCCCeEEEeccCCCCCCCcccccccccccccCcccEEEEecCCCCCcccEEEEEcccccCCCccCCCCCCCC
Q 003057 329 DEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLF 408 (852)
Q Consensus 329 ~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~ 408 (852)
.......|.+.||++..+.. ...|.|++|||++ +++||+.|+....+ .
T Consensus 266 ~~~~~~~Ll~~Gv~I~~y~~-----------------~~lHaK~~viD~~--------~~~vGS~Nld~rS~-~------ 313 (411)
T PRK11263 266 ARLLYNYLLKGGVQIYEYCR-----------------RPLHGKVALMDDH--------WATVGSSNLDPLSL-S------ 313 (411)
T ss_pred HHHHHHHHHHCCCEEEEecC-----------------CCceeEEEEECCC--------EEEEeCCcCCHHHh-h------
Confidence 22345567788999876532 2589999999996 99999999966321 0
Q ss_pred cccccccCCCCCCCCcCCCCCCCCCCCeeeccceeeChH-HHHHHHHHHHHHhh
Q 003057 409 KTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPA-AYDILTNFEERWLK 461 (852)
Q Consensus 409 ~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gpa-a~dl~~~F~~rW~~ 461 (852)
-=.++.+.|.+|. +.++...|.+.+..
T Consensus 314 --------------------------lN~E~~~~i~d~~~a~~l~~~~~~~~~~ 341 (411)
T PRK11263 314 --------------------------LNLEANLIIRDRAFNQTLRDNLNGLIAA 341 (411)
T ss_pred --------------------------hhhhcCEEEeCHHHHHHHHHHHHHHHHh
Confidence 0126678888875 67888999998863
No 137
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.94 E-value=2.7e-09 Score=123.41 Aligned_cols=121 Identities=26% Similarity=0.381 Sum_probs=93.9
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeee-cCCCCCeee
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVI-SNSESPVWM 116 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~----~~~~rT~vi-~~t~nP~Wn 116 (852)
+|.|+|+.+.++...--.+ .+...+||||.|.+.+ ....||+++ .|+-||.|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~----------------------~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~ 674 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKT----------------------KFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWD 674 (746)
T ss_pred eeEEEEEecCcccCCCCCC----------------------cccccCCCCEEEEEcccccchhhhhceeeccCCcCcccC
Confidence 8999999999776431100 1134589999999965 333599955 559999999
Q ss_pred eEEEEeecCCC-cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEee
Q 003057 117 QHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (852)
Q Consensus 117 E~F~~~v~~~~-~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~ 188 (852)
|+|.|++.-+. .-|+|.|.|+|..+ |+|+|+..+|+++|..|- +-++|++..|+.+ ...+|-+.+.+.
T Consensus 675 e~f~F~l~vPELAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G~~~-~~asLfv~i~~~ 744 (746)
T KOG0169|consen 675 EEFEFQLSVPELALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGY---RHVPLLSREGEAL-SSASLFVRIAIV 744 (746)
T ss_pred CeEEEEEeccceeEEEEEEEecCCCCcccccceeeccHHHhhCce---eeeeecCCCCccc-cceeEEEEEEEe
Confidence 99999987776 78999999999988 999999999999999875 4689999888865 334666666654
No 138
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.80 E-value=1.2e-09 Score=74.02 Aligned_cols=27 Identities=63% Similarity=0.992 Sum_probs=18.4
Q ss_pred cccCcccEEEEecCCCCCcccEEEEEcccccCCCc
Q 003057 365 IYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGR 399 (852)
Q Consensus 365 ~~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~r 399 (852)
.++||||++|||++ +||+||+|||++|
T Consensus 2 ~~~~H~K~~vvD~~--------~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 2 GGSHHQKFVVVDDR--------VAFVGGANLCDGR 28 (28)
T ss_dssp TBEE---EEEETTT--------EEEEE---SSHHH
T ss_pred CcceeeEEEEEcCC--------EEEECceecCCCC
Confidence 37899999999997 9999999999864
No 139
>PRK05443 polyphosphate kinase; Provisional
Probab=98.80 E-value=1.8e-08 Score=119.98 Aligned_cols=119 Identities=18% Similarity=0.140 Sum_probs=88.9
Q ss_pred HHHHHHHHhccc-----eEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCCCCCCCCCh
Q 003057 547 TAYVKAIRAAQH-----FIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMWPEGITTSP 621 (852)
Q Consensus 547 ~ayl~aI~~A~~-----~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~peg~~~~~ 621 (852)
+..++.|++|.+ .|.|+-..+..++ .+..++..| +++|++|.|+++..+-. +
T Consensus 351 ~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s-----------------~iv~aL~~A--a~~Gk~V~vlve~karf---d- 407 (691)
T PRK05443 351 DPVVEFLRQAAADPDVLAIKQTLYRTSKDS-----------------PIVDALIEA--AENGKQVTVLVELKARF---D- 407 (691)
T ss_pred hHHHHHHHHhccCCCeeEEEEEEEEecCCH-----------------HHHHHHHHH--HHcCCEEEEEEccCccc---c-
Confidence 457889999999 7988764444332 344555554 47899999999986521 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchHHHhhccCeeeEE
Q 003057 622 QIQRILYWQHKTMQMMYETIYKALVESGLQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQALAKKNRRFQIY 701 (852)
Q Consensus 622 ~~~~i~~~~~~t~~~~~~~~~~~L~~~Gv~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy 701 (852)
.|+. ...++.|+++|+++.|.. . ...
T Consensus 408 ------e~~n-------~~~~~~L~~aGv~V~y~~------------------~-----------------------~~k 433 (691)
T PRK05443 408 ------EEAN-------IRWARRLEEAGVHVVYGV------------------V-----------------------GLK 433 (691)
T ss_pred ------HHHH-------HHHHHHHHHcCCEEEEcc------------------C-----------------------Ccc
Confidence 1111 145788999999985421 0 148
Q ss_pred EEeeEEEEece-------EEEEeccCCCCCCcCCCCCCceEEEeecCccc
Q 003057 702 IHSKGMIVDDE-------YVIIGSANINQRSLEGTRDTEIAMGAYQPRHT 744 (852)
Q Consensus 702 vHSKlmIVDD~-------~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~ 744 (852)
+|||+++||++ |+.|||+|+|.||.. .++|+++.+.|++.+
T Consensus 434 ~HaK~~lid~~e~~~~~~~~~iGTgN~n~~s~~--~y~D~~l~t~d~~i~ 481 (691)
T PRK05443 434 THAKLALVVRREGGGLRRYVHLGTGNYNPKTAR--LYTDLSLLTADPEIG 481 (691)
T ss_pred ceeEEEEEEeecCCceeEEEEEcCCCCCcchhh--hccceeEEEeChHHH
Confidence 99999999999 999999999999998 899999999998753
No 140
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.77 E-value=1.1e-07 Score=103.66 Aligned_cols=158 Identities=16% Similarity=0.269 Sum_probs=106.9
Q ss_pred HHHHHHHHHHhccceEEEEEEecCceeEEEeCCCCchHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccccCCCcH
Q 003057 251 CWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDE 330 (852)
Q Consensus 251 ~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~ 330 (852)
-.++|+..|..|+++|||..-+..|......+ .....|+++|++||-|||+||+||-+...+... ..+++. .-+
T Consensus 277 DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~-~~fw~iDdaiR~aa~RgV~vR~lvs~~~~~~~~----m~~~L~-SLq 350 (456)
T KOG3603|consen 277 DLEAILNTIDEAQKFVYISVMDYFPSTIYSKN-HRFWEIDDAIRRAAVRGVKVRLLVSCWKHSEPS----MFRFLR-SLQ 350 (456)
T ss_pred hHHHHHHHHHHHhhheeeeehhccchheeecC-cchhhhhHHHHHHhhcceEEEEEEeccCCCCch----HHHHHH-HHH
Confidence 47999999999999999998877786555444 555699999999999999999999322211100 000000 000
Q ss_pred HHHhhhcCCCeEEEec--cCCCCCCCcccccccccccccCcccEEEEecCCCCCcccEEEEEcccccCCCccCCCCCCCC
Q 003057 331 ETRRFFKHSSVQVLLC--PRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLF 408 (852)
Q Consensus 331 ~~~~~~~~~~v~v~~~--p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~ 408 (852)
.....+++..|+|.++ |.....+ +.....+|.|++|-+. .||||.-|.+.+||-...
T Consensus 351 ~l~~~~~~~~iqvk~f~VP~~~~~~--------ip~~Rv~HnKymVTe~---------aayIGTSNws~dYf~~Ta---- 409 (456)
T KOG3603|consen 351 DLSDPLENGSIQVKFFIVPQTNIEK--------IPFARVNHNKYMVTES---------AAYIGTSNWSGDYFTSTA---- 409 (456)
T ss_pred HhcCccccCceEEEEEEeCCCcccc--------CchhhhccceeEEeec---------ceeeeccCCCccceeccC----
Confidence 1112234677888775 5433211 2234589999999997 899999999998874311
Q ss_pred cccccccCCCCCCCCcCCCCCCCCCCCeeeccce-----eeChHHHHHHHHHHHHHhhhcC
Q 003057 409 KTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCR-----IDGPAAYDILTNFEERWLKASK 464 (852)
Q Consensus 409 ~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~-----i~Gpaa~dl~~~F~~rW~~~~~ 464 (852)
| +++. -.|+++.+|...|+.+|+....
T Consensus 410 ---------------------G--------~~ivv~q~~~~~~~~~ql~~vFeRdW~S~Ys 441 (456)
T KOG3603|consen 410 ---------------------G--------TAIVVRQTPHKGTLVSQLKAVFERDWNSTYS 441 (456)
T ss_pred ---------------------c--------eEEEEecCCCCCcHHHHHHHHHhhccccccc
Confidence 0 1111 3578999999999999997643
No 141
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.74 E-value=2e-08 Score=110.83 Aligned_cols=117 Identities=26% Similarity=0.496 Sum_probs=97.9
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeee-EE
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQ-HF 119 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE-~F 119 (852)
|.|.|+|..|++||-||..+ .+.|.||.|++++... ||-|..+++||.||- -|
T Consensus 3 gkl~vki~a~r~lpvmdkas-------------------------d~tdafveik~~n~t~-ktdvf~kslnp~wnsdwf 56 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKAS-------------------------DLTDAFVEIKFANTTF-KTDVFLKSLNPQWNSDWF 56 (1169)
T ss_pred CcceeEEEeccCCccccccc-------------------------ccchheeEEEecccce-ehhhhhhhcCCcccccce
Confidence 88999999999999998643 4579999999999998 999999999999997 67
Q ss_pred EEeecCCC---cEEEEEEEecCCcC-CceeeeEEEeeeeec----------CCCeeeeeeecccCCCCCCCCCceeeeeE
Q 003057 120 NVPVAHSA---AEVHFVVKDNDFVG-SQIMGAVGIPVEKLC----------SGDKIEGAFPILNSSRKPCKAGAVLSLSI 185 (852)
Q Consensus 120 ~~~v~~~~---~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~----------~g~~~~~w~~L~~~~~~~~~~~g~I~l~l 185 (852)
.|.|.+.. ..|.+++.|+|..+ +|.||++.|.+..|+ .|..+.+|||+++.-.- -.|+|.+.+
T Consensus 57 kfevddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg---irgeinviv 133 (1169)
T KOG1031|consen 57 KFEVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG---IRGEINVIV 133 (1169)
T ss_pred EEecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc---ccceeEEEE
Confidence 78876543 67999999999998 899999999998877 25678999999885321 237888776
Q ss_pred E
Q 003057 186 Q 186 (852)
Q Consensus 186 ~ 186 (852)
+
T Consensus 134 k 134 (1169)
T KOG1031|consen 134 K 134 (1169)
T ss_pred E
Confidence 6
No 142
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.71 E-value=5.2e-08 Score=111.60 Aligned_cols=121 Identities=26% Similarity=0.423 Sum_probs=92.8
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC-----EEEeeeeeecCCCCCee
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG-----AVIGRTFVISNSESPVW 115 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~-----~~~~rT~vi~~t~nP~W 115 (852)
-+|.|.|+.|++|+... ++-..|+|.|.+.+ .+..+|.|+.|.+||+|
T Consensus 1065 ~~lsv~vigaRHL~k~g---------------------------r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiW 1117 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG---------------------------RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIW 1117 (1267)
T ss_pred eEEEEEEeeccccccCC---------------------------CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCC
Confidence 38999999999998432 33457999999953 45556777888999999
Q ss_pred e-eEEEEeecCCC-cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEeecccc
Q 003057 116 M-QHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTPVEN 192 (852)
Q Consensus 116 n-E~F~~~v~~~~-~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~p~~~ 192 (852)
| |.|+|.+.++. ..|+|.|+|.|.++ ..|||++.+||..|.+|- +-+||.+.-.+-+ ..+.|.+.++-.|+..
T Consensus 1118 n~e~ftFeI~nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~ySEdl-ELaSLLv~i~m~~~~~ 1193 (1267)
T KOG1264|consen 1118 NPEKFTFEIYNPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSGF---RSVPLKNGYSEDL-ELASLLVFIEMRPVLE 1193 (1267)
T ss_pred CCcceEEEeeCCceEEEEEEEecccccCCcceeeeeecchhhhhccc---eeeecccCchhhh-hhhhheeeeEeccccC
Confidence 9 99999998877 78999999999999 569999999999999886 4567755433322 3356666666656544
No 143
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=98.64 E-value=1.3e-07 Score=108.17 Aligned_cols=138 Identities=17% Similarity=0.184 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhccceEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCCCC--CCCCCh
Q 003057 544 SIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMWPE--GITTSP 621 (852)
Q Consensus 544 sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~pe--g~~~~~ 621 (852)
.+..+++++|++|+++||||+-||-.+.. +.++..+|.+|.++++|++|+|++...-. |.....
T Consensus 35 ~f~~~Ll~~I~~Ak~~I~l~~y~~~~D~~--------------g~~il~AL~~a~~~~~gv~VrvLvD~~Ra~Rg~iG~~ 100 (451)
T PRK09428 35 DFRETLLEKIASAKKRIYIVALYLEDDEA--------------GREILDALYQAKQQNPELDIKVLVDWHRAQRGLIGAA 100 (451)
T ss_pred HHHHHHHHHHHhcCCeEEEEEEEecCCch--------------HHHHHHHHHHHHhcCCCcEEEEEEEcccccccccccC
Confidence 68999999999999999999999987642 56788888887777899999999986310 000000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchHHHhhccCeee
Q 003057 622 QIQRILYWQHKTMQMMYETIYKALVESG--LQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQALAKKNRRFQ 699 (852)
Q Consensus 622 ~~~~i~~~~~~t~~~~~~~~~~~L~~~G--v~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (852)
+. .....++..|.++| +++.+ |.+..+ .+...
T Consensus 101 ~~------------~~~~~~~~~l~~~~~gv~v~~--------f~~p~~--------------------------~~e~~ 134 (451)
T PRK09428 101 AS------------NTNADWYCEMAQEYPGVDIPV--------YGVPVN--------------------------TREAL 134 (451)
T ss_pred CC------------CcCHHHHHHHHHhCCCceEEE--------cCCccc--------------------------cchhh
Confidence 00 00124566777754 55432 211000 00011
Q ss_pred EEEEeeEEEEeceEEEEeccCCCCCCcCCC--CCCceEEEeecCc
Q 003057 700 IYIHSKGMIVDDEYVIIGSANINQRSLEGT--RDTEIAMGAYQPR 742 (852)
Q Consensus 700 iyvHSKlmIVDD~~~iIGSANln~RSm~g~--~DsEi~v~i~d~~ 742 (852)
...|-|++||||++++.| |||++--+... ....-.+.|++|.
T Consensus 135 gr~HrKi~IiD~~v~ysG-aNi~d~Yl~~~~~~r~Dry~~i~g~~ 178 (451)
T PRK09428 135 GVLHLKGFIIDDTVLYSG-ASLNNVYLHQHDKYRYDRYHLIRNAE 178 (451)
T ss_pred hhceeeEEEECCCEEEec-ccccHHHhcCCcccCcceEEEEeCch
Confidence 247999999999999999 89998555410 0123355576665
No 144
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=98.55 E-value=5.5e-08 Score=66.56 Aligned_cols=26 Identities=58% Similarity=0.728 Sum_probs=24.6
Q ss_pred EEEEeeEEEEeceEEEEeccCCCCCC
Q 003057 700 IYIHSKGMIVDDEYVIIGSANINQRS 725 (852)
Q Consensus 700 iyvHSKlmIVDD~~~iIGSANln~RS 725 (852)
.+.|+|+||||+++++|||+||+.||
T Consensus 3 ~~~H~K~~v~D~~~~~iGs~N~~~~~ 28 (28)
T smart00155 3 GVLHTKLMIVDDEIAYIGSANLDGRS 28 (28)
T ss_pred CcEEeEEEEEcCCEEEEeCccCCCCC
Confidence 47999999999999999999999987
No 145
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.54 E-value=1.7e-08 Score=114.31 Aligned_cols=120 Identities=23% Similarity=0.391 Sum_probs=90.8
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC------------------------
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC------------------------ 97 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~------------------------ 97 (852)
-|.|.+.+|++|.+.|. +|.||||+...+-
T Consensus 115 ~l~is~~~ak~l~akd~--------------------------ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~ 168 (1103)
T KOG1328|consen 115 LLNISLLEAKDLIAKDV--------------------------NGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQ 168 (1103)
T ss_pred HHHHHHHHhcCccccCC--------------------------CCCCChhhhhccccccccccChhhhhhhhhhhhhccc
Confidence 46788889999988775 6667777776551
Q ss_pred ------CEEEeeeeeecCCCCCeeeeEEEEeecCCC-cEEEEEEEecCCc------------------------------
Q 003057 98 ------GAVIGRTFVISNSESPVWMQHFNVPVAHSA-AEVHFVVKDNDFV------------------------------ 140 (852)
Q Consensus 98 ------~~~~~rT~vi~~t~nP~WnE~F~~~v~~~~-~~l~~~V~D~d~~------------------------------ 140 (852)
.+-+.-|.|.++|+||+|||.|.|.+.+-. ..+.+-+||+|.-
T Consensus 169 ~~GpiPAKlIkatsvk~~TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSA 248 (1103)
T KOG1328|consen 169 DTGPIPAKLIKATSVKKKTLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSA 248 (1103)
T ss_pred cCCCCcHHHhhhcccccccCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHH
Confidence 011234888888999999999999998765 5688999997721
Q ss_pred -------CCceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEeec
Q 003057 141 -------GSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (852)
Q Consensus 141 -------~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~p 189 (852)
.|||+|.+-|||.+|.. ...+.||+|.-.+.+. +..|.+++.+...-
T Consensus 249 Rans~d~tDDFLGciNipl~EiP~-~Gld~WFkLepRS~~S-~VqG~~~LklwLsT 302 (1103)
T KOG1328|consen 249 RANSDDCTDDFLGCINIPLAEIPP-DGLDQWFKLEPRSDKS-KVQGQVKLKLWLST 302 (1103)
T ss_pred hcCCCccccccccccccchhcCCc-chHHHHhccCcccccc-cccceEEEEEEEee
Confidence 15799999999999984 4588999996544432 56788888887653
No 146
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.49 E-value=3.8e-08 Score=111.65 Aligned_cols=93 Identities=25% Similarity=0.370 Sum_probs=79.5
Q ss_pred eeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC------EEEeeeeeecCCC
Q 003057 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG------AVIGRTFVISNSE 111 (852)
Q Consensus 38 ~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~------~~~~rT~vi~~t~ 111 (852)
.-|.+|-|.|+-|+++-+.|. +|.|||||.|.|.. ..+.||+|++.|+
T Consensus 944 ~n~q~L~veVlhA~diipLD~--------------------------NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtL 997 (1103)
T KOG1328|consen 944 GNAQTLVVEVLHAKDIIPLDS--------------------------NGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTL 997 (1103)
T ss_pred ccccchhhhhhccccccccCC--------------------------CCCCCCeEEEEeccccccccchhhhhhhhhccc
Confidence 346688889999999988775 89999999999964 3446999999999
Q ss_pred CCeeeeEEEEeecCC-----CcEEEEEEEecCCcC-CceeeeEEEeeeeec
Q 003057 112 SPVWMQHFNVPVAHS-----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLC 156 (852)
Q Consensus 112 nP~WnE~F~~~v~~~-----~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~ 156 (852)
||+++|+|.|.|+.. ...|.|+|+|+|.+. +||-|++.+.|.++.
T Consensus 998 nPVfDE~FeFsVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 998 NPVFDETFEFSVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred cchhhhheeeecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 999999999987543 256899999999988 899999999998776
No 147
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.43 E-value=1.4e-06 Score=100.64 Aligned_cols=135 Identities=24% Similarity=0.301 Sum_probs=96.7
Q ss_pred HHHHHHHHhccceEEEEE-EecCceeEEEeCCCCchHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccccCCCcHH
Q 003057 253 QDVYDAINQARRLIYITG-WSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEE 331 (852)
Q Consensus 253 ~~l~~aI~~Ak~~I~I~~-w~~~p~~~l~r~~~~~~~l~~lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~ 331 (852)
..++.+|.+|+++|+|++ | ++.+ ..+.++|+.++++||+|+|++ ++.+..... ........
T Consensus 273 ~~~~~~i~~A~~~i~i~~pY-------f~~~----~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~~------~~~~~~~~ 334 (438)
T COG1502 273 RLLLKAINSARESILIATPY-------FVPD----RELLAALKAAARRGVDVRIII-PSLGANDSA------IVHAAYRA 334 (438)
T ss_pred HHHHHHHHhhceEEEEEcCC-------cCCC----HHHHHHHHHHHhcCCEEEEEe-CCCCCCChH------HHHHHHHH
Confidence 679999999999999998 7 5544 788899999999999999998 743211110 00001122
Q ss_pred HHhhhcCCCeEEEeccCCCCCCCcccccccccccccCcccEEEEecCCCCCcccEEEEEcccccCCCccCCCCCCCCccc
Q 003057 332 TRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTL 411 (852)
Q Consensus 332 ~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~~~~ 411 (852)
....+...|+++..++.. ...|.|++|||++ +++||+.|+...-+..
T Consensus 335 ~~~~l~~~gv~i~~~~~g----------------~~lH~K~~iiD~~--------~~~vGS~N~~~rS~~l--------- 381 (438)
T COG1502 335 YLKELLEAGVKVYEYPGG----------------AFLHSKVMIIDDR--------TVLVGSANLDPRSLRL--------- 381 (438)
T ss_pred HHHHHHHhCCEEEEecCC----------------CcceeeEEEEcCC--------EEEEeCCcCCHhHHHH---------
Confidence 344556788888666430 2689999999996 9999999998743210
Q ss_pred ccccCCCCCCCCcCCCCCCCCCCCeeeccceeeCh-HHHHHHHHHHHHHhhh
Q 003057 412 ETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGP-AAYDILTNFEERWLKA 462 (852)
Q Consensus 412 ~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gp-aa~dl~~~F~~rW~~~ 462 (852)
| -.+.+.|+.+ .+.++...|...|...
T Consensus 382 ---------N---------------~E~~~~i~d~~~~~~~~~~~~~~~~~s 409 (438)
T COG1502 382 ---------N---------------FEVGLVIEDPELALKLRREFEADLARS 409 (438)
T ss_pred ---------h---------------hhheeEEeCHHHHHHHHHHHHHHHHHH
Confidence 0 2557778887 7888999998766654
No 148
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.21 E-value=4.3e-07 Score=61.59 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=17.9
Q ss_pred EEEEeeEEEEeceEEEEeccCCCCCC
Q 003057 700 IYIHSKGMIVDDEYVIIGSANINQRS 725 (852)
Q Consensus 700 iyvHSKlmIVDD~~~iIGSANln~RS 725 (852)
...|+|++||||++++|||+||+.|+
T Consensus 3 ~~~H~K~~vvD~~~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 3 GSHHQKFVVVDDRVAFVGGANLCDGR 28 (28)
T ss_dssp BEE---EEEETTTEEEEE---SSHHH
T ss_pred cceeeEEEEEcCCEEEECceecCCCC
Confidence 47899999999999999999999874
No 149
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=97.99 E-value=0.00037 Score=75.53 Aligned_cols=129 Identities=21% Similarity=0.211 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHhccceEEEEEEecCceeEEEeCCCCchHHHHHHHHhh--hcCCeEEEEEeCCC-cccccccccccccc
Q 003057 249 ESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKS--QEGVRVLILAWDDP-TSRSILGYKTDGIM 325 (852)
Q Consensus 249 ~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a--~rGV~VriLvwD~~-~s~~~~~~~~~~~~ 325 (852)
.++|+.+...|.+|+++|+|+.- || +.....|.+.|..+- +.-.+|.||+ |.. +....++... |
T Consensus 38 ~~fy~~lk~~I~~aq~Ri~lasL------Yl---G~~E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~~~~s---~ 104 (469)
T KOG3964|consen 38 PEFYQRLKKLIKKAQRRIFLASL------YL---GKLERELVDCLSNALEKNPSLKVSILL-DFLRGTRELPNSCS---A 104 (469)
T ss_pred HHHHHHHHHHHHHhhheeeeeee------cc---chhHHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCcccch---h
Confidence 37899999999999999999974 34 224467778887763 5679999997 864 2222211100 0
Q ss_pred CCCcHHHHhhhcCCCeEEEec--cCCCCCCCcccccccccccccCcccEEEEecCCCCCcccEEEEEcccccCCCccC
Q 003057 326 STNDEETRRFFKHSSVQVLLC--PRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYD 401 (852)
Q Consensus 326 ~~~~~~~~~~~~~~~v~v~~~--p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~r~D 401 (852)
.....-.+++. ..|++.++ |...+.....+..+..-.....|-|+.-+|++ ..+-|.|+.++|+.
T Consensus 105 llp~~l~kkf~--e~vd~~lyhtp~Lrg~~k~Lvp~rfneg~GlQhmKIy~fdde---------viiSGanls~dyfT 171 (469)
T KOG3964|consen 105 LLPVWLGKKFP--ERVDESLYHTPFLRGLSKSLVPARFNEGLGLQHMKIYGFDDE---------VIISGANLSNDYFT 171 (469)
T ss_pred hchHHHhhhhh--hhhceeeecChhhhhhhhhcCchhhccccchhhhhhhcccHh---------hhcccccchhhhhc
Confidence 00000111222 23555544 33322211111111112346799999999995 57889999998553
No 150
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=97.95 E-value=1e-05 Score=74.77 Aligned_cols=80 Identities=28% Similarity=0.484 Sum_probs=63.3
Q ss_pred CCcEEEEEEC---CEEEeeeeeecCCCCCeeeeEEEEeec--------C--------CCcEEEEEEEecCCc--------
Q 003057 88 SDPYVTVSIC---GAVIGRTFVISNSESPVWMQHFNVPVA--------H--------SAAEVHFVVKDNDFV-------- 140 (852)
Q Consensus 88 ~DpYv~v~l~---~~~~~rT~vi~~t~nP~WnE~F~~~v~--------~--------~~~~l~~~V~D~d~~-------- 140 (852)
.++||+|.+. +.+.-+||++.++.-|.+|-+|.|+|+ . ...++.|.||+....
T Consensus 33 VN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~ 112 (143)
T cd08683 33 VNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKI 112 (143)
T ss_pred cceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceecc
Confidence 6999999973 444449999999999999999999987 1 125788999986533
Q ss_pred ---CCceeeeEEEeeeeecC-CCeeeeeeec
Q 003057 141 ---GSQIMGAVGIPVEKLCS-GDKIEGAFPI 167 (852)
Q Consensus 141 ---~~~~iG~~~i~l~~l~~-g~~~~~w~~L 167 (852)
+|-+||.+.||+.+|.. ...+.+|||+
T Consensus 113 ~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 113 ETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 23489999999999884 4468999985
No 151
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.95 E-value=9.7e-06 Score=92.98 Aligned_cols=106 Identities=20% Similarity=0.312 Sum_probs=79.0
Q ss_pred CCCCCcEEEEEECCE---EEeeeeeecCCCCCeeeeEEEEeecCC----------------CcEEEEEEEe-cCCcC-Cc
Q 003057 85 KITSDPYVTVSICGA---VIGRTFVISNSESPVWMQHFNVPVAHS----------------AAEVHFVVKD-NDFVG-SQ 143 (852)
Q Consensus 85 ~g~~DpYv~v~l~~~---~~~rT~vi~~t~nP~WnE~F~~~v~~~----------------~~~l~~~V~D-~d~~~-~~ 143 (852)
++..||||+|.+.+. ...+|+++++|.+|.|||.|.|.+... ...|++++|+ ++... ++
T Consensus 148 ~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~ 227 (800)
T KOG2059|consen 148 NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDV 227 (800)
T ss_pred CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhh
Confidence 556999999999642 235999999999999999999887654 2457788888 44444 88
Q ss_pred eeeeEEEeeeeecCCCeeeeeeeccc-CCCCCC---CCCceeeeeEEeecc
Q 003057 144 IMGAVGIPVEKLCSGDKIEGAFPILN-SSRKPC---KAGAVLSLSIQYTPV 190 (852)
Q Consensus 144 ~iG~~~i~l~~l~~g~~~~~w~~L~~-~~~~~~---~~~g~I~l~l~f~p~ 190 (852)
|+|++.+|+..+.....-+.||.|.. ++|+.. ..-|.+++.+.|+..
T Consensus 228 FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D 278 (800)
T KOG2059|consen 228 FLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTED 278 (800)
T ss_pred hceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeeec
Confidence 99999999988875556678999863 233321 234788888888753
No 152
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=4.8e-05 Score=80.64 Aligned_cols=101 Identities=18% Similarity=0.166 Sum_probs=79.4
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC----CEEEeeeeeecCCCCCee
Q 003057 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC----GAVIGRTFVISNSESPVW 115 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~----~~~~~rT~vi~~t~nP~W 115 (852)
..-|.|+++.+..|..||. +|-+||||.+.+. ....+||.+.+++.||++
T Consensus 232 ~~~l~vt~iRc~~l~ssDs--------------------------ng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~f 285 (362)
T KOG1013|consen 232 TPGLIVTIIRCSHLASSDS--------------------------NGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEF 285 (362)
T ss_pred CCceEEEEEEeeeeecccc--------------------------CCCCCccceeecCCCcchhhcccCcchhccCCccc
Confidence 3568999999999998875 7889999999994 233358999999999999
Q ss_pred eeEEEEeecCCC---cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecc
Q 003057 116 MQHFNVPVAHSA---AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (852)
Q Consensus 116 nE~F~~~v~~~~---~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 168 (852)
||.|.+.+.+.. ..+.|+|+|.+..+ .+++|-....+ ...+....+|+.-+
T Consensus 286 d~~~~~~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~--~rr~~v~~h~gr~~ 340 (362)
T KOG1013|consen 286 DEEFFYDIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGG--YRRGEVHKHWGRCL 340 (362)
T ss_pred cccccccCCccchhcceEEEeecccCCCcCccCCCcccccc--cccchhhcCccccc
Confidence 999998876543 57899999999875 88999755543 34566677776543
No 153
>PF13918 PLDc_3: PLD-like domain
Probab=97.65 E-value=0.00046 Score=68.43 Aligned_cols=57 Identities=23% Similarity=0.370 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhccceEEEEEEecCceeEEEeCCCCchHHHHHHHHhh-hcCCeEEEEE
Q 003057 251 CWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKS-QEGVRVLILA 307 (852)
Q Consensus 251 ~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a-~rGV~VriLv 307 (852)
-.++|+..|++|+++|||+--+..|-+..-.+-.-...|.++|++|| .|||+||+||
T Consensus 83 DldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 83 DLDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWPVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred HHHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcchhHHHHHHHHHHHcCCeEEEEE
Confidence 37899999999999999999998884432222233589999999987 8999999998
No 154
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.64 E-value=3.4e-05 Score=92.54 Aligned_cols=104 Identities=24% Similarity=0.321 Sum_probs=81.6
Q ss_pred eeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC----CEEEeeeeeecCCCCC
Q 003057 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC----GAVIGRTFVISNSESP 113 (852)
Q Consensus 38 ~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~----~~~~~rT~vi~~t~nP 113 (852)
.-.|+|.|-|.-||+|+-.. .....||||+..|- ++..-||+|+++|.||
T Consensus 1521 Y~~~~LtImV~H~K~L~~Lq--------------------------dg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~P 1574 (1639)
T KOG0905|consen 1521 YNNGTLTIMVMHAKGLALLQ--------------------------DGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNP 1574 (1639)
T ss_pred EcCceEEEEhhhhccccccc--------------------------CCCCCCcceeEEecCCchHhhhhhhccccccCCC
Confidence 45799999999999995211 02337999999993 2333499999999999
Q ss_pred eeeeEEE---EeecCCC-cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeec
Q 003057 114 VWMQHFN---VPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPI 167 (852)
Q Consensus 114 ~WnE~F~---~~v~~~~-~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L 167 (852)
.+||... +|..... ..|.++|+..+... +.++|.+.|||.++.-.++..+||.|
T Consensus 1575 TfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1575 TFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred chhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 9999765 4444344 67999999988766 78999999999988876677799998
No 155
>PLN02964 phosphatidylserine decarboxylase
Probab=97.62 E-value=3.9e-05 Score=90.59 Aligned_cols=102 Identities=15% Similarity=0.257 Sum_probs=78.2
Q ss_pred eceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeE
Q 003057 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQH 118 (852)
Q Consensus 39 l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~ 118 (852)
+.|...+|+++|+ |+. .|||..+-.-+.++-||.+.++|+||+|||.
T Consensus 52 ~~~~~~~~~~~~~----~~~-----------------------------~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~ 98 (644)
T PLN02964 52 FSGIALLTLVGAE----MKF-----------------------------KDKWLACVSFGEQTFRTETSDSTDKPVWNSE 98 (644)
T ss_pred ccCeEEEEeehhh----hcc-----------------------------CCcEEEEEEecceeeeeccccccCCcccchh
Confidence 4588999999997 553 5887665444444449999999999999998
Q ss_pred EEEeecCCC-cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeee--eeeecccCCCC
Q 003057 119 FNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIE--GAFPILNSSRK 173 (852)
Q Consensus 119 F~~~v~~~~-~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~--~w~~L~~~~~~ 173 (852)
..|.|.... ....|.|+|.+.++ ++++|.+.+++.++...+..+ .-|.++++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgd 157 (644)
T PLN02964 99 KKLLLEKNGPHLARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSS 157 (644)
T ss_pred hceEeccCCcceEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCC
Confidence 888775433 55799999999988 889999999998887544322 23778887764
No 156
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.52 E-value=4.6e-05 Score=90.58 Aligned_cols=86 Identities=24% Similarity=0.342 Sum_probs=75.3
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEE-eeeeeecCCCCCeeeeEEE
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVI-GRTFVISNSESPVWMQHFN 120 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~-~rT~vi~~t~nP~WnE~F~ 120 (852)
..+|.|++|-+|.+.|. +|..||||.|.+++++. -++..+.+++||++++.|.
T Consensus 614 LvrVyvv~A~~L~p~D~--------------------------ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfe 667 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDG--------------------------NGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFE 667 (1105)
T ss_pred eEEEEEEEeeeccccCC--------------------------CCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHH
Confidence 57899999999998875 78899999999998775 3677899999999999999
Q ss_pred EeecCCC-cEEEEEEEecCCcC-CceeeeEEEeee
Q 003057 121 VPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVE 153 (852)
Q Consensus 121 ~~v~~~~-~~l~~~V~D~d~~~-~~~iG~~~i~l~ 153 (852)
+.+.-+. ..+++.|+|+|..+ ++.||+..+.|+
T Consensus 668 l~~~lp~ek~l~v~vyd~D~~~~d~~iget~iDLE 702 (1105)
T KOG1326|consen 668 LECLLPFEKDLIVEVYDHDLEAQDEKIGETTIDLE 702 (1105)
T ss_pred hhcccchhhcceeEEEEeecccccchhhceehhhh
Confidence 8887665 67899999999988 899999999885
No 157
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.49 E-value=0.00022 Score=80.58 Aligned_cols=100 Identities=20% Similarity=0.236 Sum_probs=80.9
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC------CEEEeeeeeecCCCCCee
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC------GAVIGRTFVISNSESPVW 115 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~------~~~~~rT~vi~~t~nP~W 115 (852)
.++|+|+.|.+|+-.. .|...|||.|.+- +.+..-|++..|+-.|.+
T Consensus 1126 kvtvkvvaandlkwqt---------------------------sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKy 1178 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQT---------------------------SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKY 1178 (1283)
T ss_pred eEEEEEEecccccchh---------------------------ccccccceEEEEecCcccchhhhccccccCCCcCccc
Confidence 4689999999997432 3456899999983 244446888888999999
Q ss_pred eeEEEEeecCCC----cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecc
Q 003057 116 MQHFNVPVAHSA----AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (852)
Q Consensus 116 nE~F~~~v~~~~----~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 168 (852)
||+|+|-+.... -.|.|.|+|+.--. |..+|-+.++|.++........|+||.
T Consensus 1179 NEtF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLg 1236 (1283)
T KOG1011|consen 1179 NETFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLG 1236 (1283)
T ss_pred CceeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeecc
Confidence 999999986543 56999999987655 779999999999999777788999994
No 158
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=2.4e-05 Score=82.83 Aligned_cols=90 Identities=27% Similarity=0.319 Sum_probs=71.9
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC-----EEEeeeeeecCCCCCeee
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG-----AVIGRTFVISNSESPVWM 116 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~-----~~~~rT~vi~~t~nP~Wn 116 (852)
.|+.||..|++|+.|++ ++..|||+...+.. .+. ||++..|++||.||
T Consensus 94 ~~~~tl~~a~~lk~~~~--------------------------~~~~d~~~~~~llpga~kl~sl-r~~t~~n~lN~~w~ 146 (362)
T KOG1013|consen 94 MLDTTLDRAKGLKPMDI--------------------------NGLADPYVKLHLLPGAGKLNSL-RTKTTRNTLNPEWN 146 (362)
T ss_pred hcceeechhcccchhhh--------------------------hhhcchHHhhhcccchhhhhhh-hHHhhccCcCccee
Confidence 58999999999999987 66789999999842 333 89999999999999
Q ss_pred eEEEEe--ecCCC--cEEEEEEEecCCcC-CceeeeEEEeeeeecCC
Q 003057 117 QHFNVP--VAHSA--AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSG 158 (852)
Q Consensus 117 E~F~~~--v~~~~--~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g 158 (852)
|+-... ..+.. ..+++.|.|++.+. .+++|+..+++..|.+.
T Consensus 147 etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~ 193 (362)
T KOG1013|consen 147 ETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPL 193 (362)
T ss_pred ccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChh
Confidence 965433 33332 45778888988877 88999999999888853
No 159
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=97.45 E-value=0.00088 Score=80.12 Aligned_cols=117 Identities=18% Similarity=0.223 Sum_probs=80.6
Q ss_pred HHHHHHHHhccc-----eEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCCCCCCCCCh
Q 003057 547 TAYVKAIRAAQH-----FIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMWPEGITTSP 621 (852)
Q Consensus 547 ~ayl~aI~~A~~-----~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~peg~~~~~ 621 (852)
...++.|++|.+ .|.|+- |-+++.. .+..++.+| +++|++|.|++-...-.+ .
T Consensus 342 ~~v~~~i~~Aa~DP~V~~Ik~tl-Yr~~~~s----------------~ii~aL~~A--a~~Gk~V~v~veLkArfd---e 399 (672)
T TIGR03705 342 DPVVEFLRQAAEDPDVLAIKQTL-YRTSKDS----------------PIIDALIEA--AENGKEVTVVVELKARFD---E 399 (672)
T ss_pred HHHHHHHHHHhcCCCceEEEEEE-EEecCCc----------------HHHHHHHHH--HHcCCEEEEEEEehhhcc---c
Confidence 567889999998 799976 4443321 355555555 478999999998543211 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchHHHhhccCeeeEE
Q 003057 622 QIQRILYWQHKTMQMMYETIYKALVESGLQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQALAKKNRRFQIY 701 (852)
Q Consensus 622 ~~~~i~~~~~~t~~~~~~~~~~~L~~~Gv~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy 701 (852)
..-..| .+.|.++|+++.|.- ....
T Consensus 400 --~~ni~w------------a~~le~aG~~viyg~-----------------------------------------~~~k 424 (672)
T TIGR03705 400 --EANIRW------------ARRLEEAGVHVVYGV-----------------------------------------VGLK 424 (672)
T ss_pred --hhhHHH------------HHHHHHcCCEEEEcC-----------------------------------------CCee
Confidence 111223 467899999886410 0258
Q ss_pred EEeeEEEEec-------eEEEEeccCCCCCCcCCCCCCceEEEeecCc
Q 003057 702 IHSKGMIVDD-------EYVIIGSANINQRSLEGTRDTEIAMGAYQPR 742 (852)
Q Consensus 702 vHSKlmIVDD-------~~~iIGSANln~RSm~g~~DsEi~v~i~d~~ 742 (852)
+|||+++||. +++.||+.|+|...-. .=+++++...+++
T Consensus 425 ~H~K~~li~r~~~~~~~~y~~igTgN~n~~ta~--~y~D~~l~t~~~~ 470 (672)
T TIGR03705 425 THAKLALVVRREGGELRRYVHLGTGNYHPKTAR--LYTDLSLFTADPE 470 (672)
T ss_pred eeeEEEEEEEeeCCceEEEEEecCCCCCCcccc--cccceeEEEeChH
Confidence 9999999997 4799999999999765 4577787765554
No 160
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=97.44 E-value=0.0029 Score=67.34 Aligned_cols=161 Identities=19% Similarity=0.197 Sum_probs=95.4
Q ss_pred cCceeEEeecccccCCCccceeccCCcccCchhHHHHHHHHHHhccceEEEEEEecCceeEEEeCCCCchHHHHHHHHhh
Q 003057 218 RGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKS 297 (852)
Q Consensus 218 ~g~~v~l~~dg~~~~~~~~~i~~~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a 297 (852)
.-.+|++|..-+. ...|. +=+.+-..|.+|++-|-|.+= +|.| ..-|.|+|.++-
T Consensus 117 g~Tr~~vy~qPp~--~~~p~-------------IKE~vR~~I~~A~kVIAIVMD-------~FTD---~dIf~DLleAa~ 171 (284)
T PF07894_consen 117 GVTRATVYFQPPK--DGQPH-------------IKEVVRRMIQQAQKVIAIVMD-------VFTD---VDIFCDLLEAAN 171 (284)
T ss_pred CCceEEEEeCCCC--CCCCC-------------HHHHHHHHHHHhcceeEEEee-------cccc---HHHHHHHHHHHH
Confidence 3478999986532 23333 356788999999999999874 4444 255666666666
Q ss_pred hcCCeEEEEEeCCCccccccccccccccCCCcHHHHhhhcCCCeEEEeccCCCCCCCcccccccccccccCcccEEEEec
Q 003057 298 QEGVRVLILAWDDPTSRSILGYKTDGIMSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDA 377 (852)
Q Consensus 298 ~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~ 377 (852)
+|||-||||+ |..+...++. ....+..+ ...+ .|+.|+...-. .|........-...|+|+++||+
T Consensus 172 kR~VpVYiLL-D~~~~~~Fl~--Mc~~~~v~----~~~~--~nmrVRsv~G~-----~y~~rsg~k~~G~~~eKF~lvD~ 237 (284)
T PF07894_consen 172 KRGVPVYILL-DEQNLPHFLE--MCEKLGVN----LQHL--KNMRVRSVTGC-----TYYSRSGKKFKGQLKEKFMLVDG 237 (284)
T ss_pred hcCCcEEEEe-chhcChHHHH--HHHHCCCC----hhhc--CCeEEEEecCC-----eeecCCCCeeeCcccceeEEEec
Confidence 9999999998 8866543221 00000000 1112 34444432110 01000111234689999999999
Q ss_pred CCCCCcccEEEEEcccccCCCccCCCCCCCCcccccccCCCCCCCCcCCCCCCCCCCCeeeccceeeChHHHHHHHHHHH
Q 003057 378 DAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTNFEE 457 (852)
Q Consensus 378 ~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa~dl~~~F~~ 457 (852)
+ .+..|+-=.+.- +.. -. +-+-..+.|.+|...-+-|..
T Consensus 238 ~--------~V~~GSYSFtWs--~~~---------------------------~~----r~~~~~~tGq~Ve~FD~EFR~ 276 (284)
T PF07894_consen 238 D--------KVISGSYSFTWS--SSR---------------------------VH----RNLVTVLTGQIVESFDEEFRE 276 (284)
T ss_pred c--------cccccccceeec--ccc---------------------------cc----cceeEEEeccccchHhHHHHH
Confidence 7 777887544432 000 01 235678899999999999876
Q ss_pred H
Q 003057 458 R 458 (852)
Q Consensus 458 r 458 (852)
-
T Consensus 277 L 277 (284)
T PF07894_consen 277 L 277 (284)
T ss_pred H
Confidence 4
No 161
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.41 E-value=0.00012 Score=50.00 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=22.6
Q ss_pred ccCcccEEEEecCCCCCcccEEEEEcccccCCC
Q 003057 366 YTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKG 398 (852)
Q Consensus 366 ~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~ 398 (852)
.++|+|++|||++ .+|+||.|++..
T Consensus 3 ~~~H~K~~v~D~~--------~~~iGs~N~~~~ 27 (28)
T smart00155 3 GVLHTKLMIVDDE--------IAYIGSANLDGR 27 (28)
T ss_pred CcEEeEEEEEcCC--------EEEEeCccCCCC
Confidence 4799999999996 999999999874
No 162
>PLN02866 phospholipase D
Probab=97.37 E-value=0.00045 Score=84.26 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhccceEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEec
Q 003057 544 SIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIP 611 (852)
Q Consensus 544 sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP 611 (852)
....++.++|.+||++|||+.=.|-|.-+.+... .. .++..+...|.++ +++||+|+||+=
T Consensus 344 dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~----~D-~~g~RL~~lL~rK--AkrGVkVrVLLy 404 (1068)
T PLN02866 344 AAFEAIASAIENAKSEIFITGWWLCPELYLRRPF----HD-HESSRLDSLLEAK--AKQGVQIYILLY 404 (1068)
T ss_pred HHHHHHHHHHHhcccEEEEEEccCCceEEEEecC----CC-chHHHHHHHHHHH--HHCCCEEEEEEE
Confidence 6889999999999999999654443332222110 00 1244555555554 678999999853
No 163
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.21 E-value=0.00018 Score=61.99 Aligned_cols=97 Identities=13% Similarity=0.180 Sum_probs=69.0
Q ss_pred EEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEE--EEECCEEEeeeeeecCCCCCeeeeEEEE
Q 003057 44 DIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVT--VSICGAVIGRTFVISNSESPVWMQHFNV 121 (852)
Q Consensus 44 ~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~--v~l~~~~~~rT~vi~~t~nP~WnE~F~~ 121 (852)
=+||+.+++|.-....++ ...-|++ +.|.+....||.+.+.+.||+++|+|.|
T Consensus 2 witv~~c~d~s~~~~~~e-------------------------~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVF 56 (103)
T cd08684 2 WITVLKCKDLSWPSSCGE-------------------------NPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVF 56 (103)
T ss_pred EEEEEEecccccccccCc-------------------------CCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHH
Confidence 378999999975432111 1223554 5566666669999999999999999998
Q ss_pred eecCCC---cEEEEEEEecCCcCCceeeeEEEeeeeecCCCeeeeeeec
Q 003057 122 PVAHSA---AEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPI 167 (852)
Q Consensus 122 ~v~~~~---~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L 167 (852)
.++-.. ..|.|.|+. .....+.||.+.+.+.++- .++.++|.++
T Consensus 57 qi~l~qL~~V~L~fsv~~-~~~RKe~iG~~sL~l~s~g-eeE~~HW~e~ 103 (103)
T cd08684 57 AIKLQNLQTVRLVFKIQT-QTPRKRTIGECSLSLRTLS-TQETDHWLEI 103 (103)
T ss_pred HHHHhhccceEEEEEeec-cCCccceeeEEEeecccCC-HHHhhhhhcC
Confidence 876432 567888887 3334789999999998765 4567788764
No 164
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.55 E-value=0.0022 Score=69.39 Aligned_cols=108 Identities=21% Similarity=0.291 Sum_probs=80.9
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEEE--eeeeeecCCCCCee
Q 003057 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAVI--GRTFVISNSESPVW 115 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~~~~--~rT~vi~~t~nP~W 115 (852)
.|+|+|.|++|++|....- . +-..+|||+|++- +..+ .+|+...++.+|-+
T Consensus 268 ~g~l~vEii~ar~l~~k~~------------------------~-k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~ply 322 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPG------------------------S-KSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLY 322 (405)
T ss_pred cCceeEEEEecccccccCC------------------------c-ccccCceeEEEEcCCCceecccccccccccCchhh
Confidence 3889999999999974321 1 1247999999992 3222 38998888888877
Q ss_pred eeEEEEeecCCCcEEEEEEEe-cCCcC-CceeeeEEEeeeeecCCC-eeeeeeecccCCC
Q 003057 116 MQHFNVPVAHSAAEVHFVVKD-NDFVG-SQIMGAVGIPVEKLCSGD-KIEGAFPILNSSR 172 (852)
Q Consensus 116 nE~F~~~v~~~~~~l~~~V~D-~d~~~-~~~iG~~~i~l~~l~~g~-~~~~w~~L~~~~~ 172 (852)
-+...|.-..+...|.++||- +.+.. +.|+|.+.|-+.+|--+. ....||+|.....
T Consensus 323 qq~l~f~~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsss 382 (405)
T KOG2060|consen 323 QQQLSFDQSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSS 382 (405)
T ss_pred hhhhhhccCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCcc
Confidence 777777766667889999975 44544 679999999999988555 6778999986543
No 165
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=96.49 E-value=0.018 Score=61.37 Aligned_cols=132 Identities=18% Similarity=0.219 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHhccceEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCCCCCCCCChh
Q 003057 543 MSIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMWPEGITTSPQ 622 (852)
Q Consensus 543 ~sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~peg~~~~~~ 622 (852)
.+|.+...++|++|++-|=|..--|+.- +|...|..|. .+|+|.|||++... +
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~FTD~------------------dIf~DLleAa-~kR~VpVYiLLD~~--------~ 185 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDVFTDV------------------DIFCDLLEAA-NKRGVPVYILLDEQ--------N 185 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeeccccH------------------HHHHHHHHHH-HhcCCcEEEEechh--------c
Confidence 3799999999999999999999888742 4555555552 27899999999762 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchHHHhhccCeeeEEE
Q 003057 623 IQRILYWQHKTMQMMYETIYKALVESGLQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQALAKKNRRFQIYI 702 (852)
Q Consensus 623 ~~~i~~~~~~t~~~~~~~~~~~L~~~Gv~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyv 702 (852)
.+.+ .+.-.+.++..... + +++-|... |.. - .++.++.+..-+
T Consensus 186 ~~~F---------------l~Mc~~~~v~~~~~--~-----nmrVRsv~-G~~------------y--~~rsg~k~~G~~ 228 (284)
T PF07894_consen 186 LPHF---------------LEMCEKLGVNLQHL--K-----NMRVRSVT-GCT------------Y--YSRSGKKFKGQL 228 (284)
T ss_pred ChHH---------------HHHHHHCCCChhhc--C-----CeEEEEec-CCe------------e--ecCCCCeeeCcc
Confidence 2222 23333445543211 1 22222110 000 0 011122345689
Q ss_pred EeeEEEEeceEEEEeccCCCCCCcCCCCCCceEEEeec
Q 003057 703 HSKGMIVDDEYVIIGSANINQRSLEGTRDTEIAMGAYQ 740 (852)
Q Consensus 703 HSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d 740 (852)
|.|.||||.+.++-||.-+.+-|-. .|.-+...+..
T Consensus 229 ~eKF~lvD~~~V~~GSYSFtWs~~~--~~r~~~~~~tG 264 (284)
T PF07894_consen 229 KEKFMLVDGDKVISGSYSFTWSSSR--VHRNLVTVLTG 264 (284)
T ss_pred cceeEEEecccccccccceeecccc--cccceeEEEec
Confidence 9999999999999999999998887 66666666543
No 166
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=96.43 E-value=0.0089 Score=70.74 Aligned_cols=102 Identities=24% Similarity=0.342 Sum_probs=75.0
Q ss_pred eeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC------EEEeeeeeecC-C
Q 003057 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG------AVIGRTFVISN-S 110 (852)
Q Consensus 38 ~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~------~~~~rT~vi~~-t 110 (852)
..-++|.|+|+.+.=|..++ .-.||.|.+-+ .+.-||+++.+ +
T Consensus 700 vIA~t~sV~VISgqFLSdrk------------------------------vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~ 749 (1189)
T KOG1265|consen 700 VIAATLSVTVISGQFLSDRK------------------------------VGTYVEVDMFGLPTDTIRKEFRTRTVQGNS 749 (1189)
T ss_pred eEEeeEEEEEEeeeeccccc------------------------------cCceEEEEecCCCchhhhhhhhhccccCCC
Confidence 35689999999998887553 34799999932 12348888765 9
Q ss_pred CCCeeee-EEEEe--ecCCCcEEEEEEEecCCcCCceeeeEEEeeeeecCCCeeeeeeecccCCCCCC
Q 003057 111 ESPVWMQ-HFNVP--VAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (852)
Q Consensus 111 ~nP~WnE-~F~~~--v~~~~~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~ 175 (852)
.||+||| .|.|. +-..-..|+|.|++. +..+||+-.+||..|.+|. +.+-|.+..+.|.
T Consensus 750 ~npvy~eepfvF~KVvLpeLA~lRiavyeE---ggK~ig~RIlpvd~l~~GY---rhv~LRse~Nqpl 811 (1189)
T KOG1265|consen 750 FNPVYEEEPFVFRKVVLPELASLRIAVYEE---GGKFIGQRILPVDGLNAGY---RHVCLRSESNQPL 811 (1189)
T ss_pred CCcccccCCcccceecccchhheeeeeecc---CCceeeeeccchhcccCcc---eeEEecCCCCCcc
Confidence 9999999 56665 222337899999996 4789999999999999885 4456655555543
No 167
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.22 E-value=0.0016 Score=77.96 Aligned_cols=85 Identities=22% Similarity=0.258 Sum_probs=63.9
Q ss_pred CCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEe---ec---CCC----cEEEEEEEecCCcC-CceeeeEEEe
Q 003057 83 SDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP---VA---HSA----AEVHFVVKDNDFVG-SQIMGAVGIP 151 (852)
Q Consensus 83 ~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~~---v~---~~~----~~l~~~V~D~d~~~-~~~iG~~~i~ 151 (852)
+|.+-+|||+.|.+.++.. .|-++.+++||.||++..|. +. |.. ..++|.|+|.++.+ ++++|+....
T Consensus 222 dk~~~sdp~a~v~f~~qs~-~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~ 300 (1105)
T KOG1326|consen 222 DKDDESDPDAAVEFCGQSK-ETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQR 300 (1105)
T ss_pred CcccCCCchhhhhcccccc-eeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhcccccc
Confidence 3467799999999988887 89999999999999977653 21 211 45789999999888 8999988775
Q ss_pred eeeecCCCeeeeeeeccc
Q 003057 152 VEKLCSGDKIEGAFPILN 169 (852)
Q Consensus 152 l~~l~~g~~~~~w~~L~~ 169 (852)
..=+.. +..-.|+++..
T Consensus 301 p~V~~~-~p~lkw~p~~r 317 (1105)
T KOG1326|consen 301 PYVMVQ-CPALKWVPTMR 317 (1105)
T ss_pred eEEEec-CCccceEEeec
Confidence 432232 33446999864
No 168
>PF13918 PLDc_3: PLD-like domain
Probab=96.18 E-value=0.045 Score=54.50 Aligned_cols=56 Identities=29% Similarity=0.468 Sum_probs=39.6
Q ss_pred HHHHHHHHHhccceEEEeeccccccC------CCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCCCC
Q 003057 546 HTAYVKAIRAAQHFIYIENQYFLGSS------FNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMWPE 615 (852)
Q Consensus 546 ~~ayl~aI~~A~~~IYIEnqYFi~~~------~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~pe 615 (852)
.+|+++.|.+|++||||+---|.|.. ..|+ ..+-|++-|+ -.|||+|++++..|..
T Consensus 84 ldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP-----------~ID~ALR~AA---~~R~V~VRlLIS~W~h 145 (177)
T PF13918_consen 84 LDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWP-----------VIDDALRRAA---IERGVKVRLLISCWKH 145 (177)
T ss_pred HHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcch-----------hHHHHHHHHH---HHcCCeEEEEEeecCC
Confidence 58999999999999999976666532 2353 1222333332 2689999999999864
No 169
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.03 E-value=0.036 Score=54.68 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=56.2
Q ss_pred eceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEE--CCEEEe---eeeeecCCCCC
Q 003057 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSI--CGAVIG---RTFVISNSESP 113 (852)
Q Consensus 39 l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l--~~~~~~---rT~vi~~t~nP 113 (852)
++..|+|+|++|.++.-.+ .+|-||++.| ++..+. .|+-+. ..++
T Consensus 6 ~~~~~~v~i~~~~~~~~~~-----------------------------~~~l~V~v~l~~g~~~L~~pv~T~~v~-~~~~ 55 (158)
T cd08398 6 INSNLRIKILCATYVNVND-----------------------------IDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNP 55 (158)
T ss_pred CCCCeEEEEEeeccCCCCC-----------------------------cCeEEEEEEEEECCEEccCeeEecccC-CCCC
Confidence 3467899999999886322 2688999877 554442 344333 3689
Q ss_pred eeeeEEEEe--ecCCC--cEEEEEEEecCCcC-----CceeeeEEEeee
Q 003057 114 VWMQHFNVP--VAHSA--AEVHFVVKDNDFVG-----SQIMGAVGIPVE 153 (852)
Q Consensus 114 ~WnE~F~~~--v~~~~--~~l~~~V~D~d~~~-----~~~iG~~~i~l~ 153 (852)
.|||-..|+ +.+.. +.|.|+|++....+ ...||.+.++|=
T Consensus 56 ~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LF 104 (158)
T cd08398 56 RWNEWLDYDIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLF 104 (158)
T ss_pred ccceeEEcccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEE
Confidence 999966555 44433 78999999855321 236888777763
No 170
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=95.75 E-value=0.056 Score=57.04 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHhccceEEEEEEecCceeEEEeCCCCchHHHHHHHHhhhcCCeEEEEEeC
Q 003057 250 SCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWD 309 (852)
Q Consensus 250 ~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a~rGV~VriLvwD 309 (852)
...+.+.+.|++|+++|+|..|. +.-..|.+.|++|.+|||+|.++++.
T Consensus 10 ~I~~~i~elI~~Ae~eI~is~~~-----------~~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 10 TILERIRELIENAESEIYISIPP-----------EFLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHC-SSEEEEEE-G-----------GGHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHhheEEEEEcCH-----------HHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 46889999999999999999982 23378999999999999999999965
No 171
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=95.53 E-value=0.048 Score=65.63 Aligned_cols=60 Identities=28% Similarity=0.333 Sum_probs=38.2
Q ss_pred CCcccCchhHHHHHHHHHHhccceEEEEEEecCceeEEEeC----CCCchHHHHHHH----Hh--hhcCCeEEEEE
Q 003057 242 GGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRD----GSNTLMLGDLLK----IK--SQEGVRVLILA 307 (852)
Q Consensus 242 ~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~----~~~~~~l~~lL~----~~--a~rGV~VriLv 307 (852)
+|..+.....-.+.+++|++|+|.|||+.= |++.. +....+++++|. +| |++--+|+|++
T Consensus 558 ~g~~~~e~SIq~AYv~~Ir~a~hFIYIENQ------fFi~ss~~~~~~~n~v~~ela~rIv~a~ra~e~frVYIVI 627 (887)
T KOG1329|consen 558 GGINEIEDSIQNAYVKAIRNAEHFIYIENQ------FFIGSSFNWDSVLNKVGDELALRIVKAIRAGEKFRVYIVI 627 (887)
T ss_pred cCCCchHHHHHHHHHHHHHhccceEEEeee------eEEeeccCCCcccchHHHHHHHHHHHHHhcCCceEEEEEE
Confidence 444455556688999999999999999762 12221 122344444443 33 55668899887
No 172
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=95.42 E-value=2.6 Score=49.63 Aligned_cols=96 Identities=19% Similarity=0.179 Sum_probs=63.9
Q ss_pred cCchhHHHHHHHHHHhccc-----eEEEEEEecCceeEEEeCCCCchHHHHHHHHhhhcCCeEEEEEeCCCccccccccc
Q 003057 246 FNHESCWQDVYDAINQARR-----LIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYK 320 (852)
Q Consensus 246 y~~~~~~~~l~~aI~~Ak~-----~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a~rGV~VriLvwD~~~s~~~~~~~ 320 (852)
|.|=+.|+.+.+.|++|-. .|-++ |.|.+ ....|.++|.+||+.|-+|-+|| .- ...
T Consensus 348 hHPYeSF~~Vv~fl~qAA~DP~VLAIKqT---------LYRt~-~dSpIV~ALi~AA~nGKqVtvlV-EL-kAR------ 409 (696)
T COG0855 348 HHPYESFEPVVEFLRQAAADPDVLAIKQT---------LYRTS-KDSPIVRALIDAAENGKQVTVLV-EL-KAR------ 409 (696)
T ss_pred ECchhhhHHHHHHHHHhhcCCCeEEEEEE---------EEecC-CCCHHHHHHHHHHHcCCeEEEEE-EE-hhh------
Confidence 3444789999999999964 33333 44442 23789999999999999999998 21 110
Q ss_pred cccccCCCcHHHHhhhcCCCeEEEeccCCCCCCCcccccccccccccCcccEEEEecC
Q 003057 321 TDGIMSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDAD 378 (852)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~ 378 (852)
.+ ...+-.+.+.|+.+||+|++--. -+--|-|+++|=-+
T Consensus 410 FD---EE~NI~WAk~LE~AGvhVvyG~~----------------glKtHAKm~lVvRr 448 (696)
T COG0855 410 FD---EEANIHWAKRLERAGVHVVYGVV----------------GLKTHAKMLLVVRR 448 (696)
T ss_pred cC---hhhhhHHHHHHHhCCcEEEeccc----------------ceeeeeeEEEEEEe
Confidence 00 00112466778899999986311 14689999888554
No 173
>PLN02352 phospholipase D epsilon
Probab=95.40 E-value=0.042 Score=66.11 Aligned_cols=84 Identities=21% Similarity=0.248 Sum_probs=49.2
Q ss_pred cCceeEEeecccccC-CCccceeccCCcccCchhHHHHHHHHHHhccceEEEEEEecCceeEEEeCCC-------CchHH
Q 003057 218 RGGKVTLYQDAHAHD-GCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGS-------NTLML 289 (852)
Q Consensus 218 ~g~~v~l~~dg~~~~-~~~~~i~~~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~-------~~~~l 289 (852)
..+.|+++-+-.... +..|. |. -...+...+.++||++||++|||+.=-|-...+.+..+. .+..|
T Consensus 426 ~~w~VQv~RSid~~sa~~~P~-----~~-~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eI 499 (758)
T PLN02352 426 RNWKVQVYRSIDHVSASHMPR-----NL-PVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEI 499 (758)
T ss_pred CcccceEEEecCccccccCCC-----CC-chhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHH
Confidence 457888887654211 11121 11 112367899999999999999998521111111222211 23567
Q ss_pred HHHHHHh--hhcCCeEEEEE
Q 003057 290 GDLLKIK--SQEGVRVLILA 307 (852)
Q Consensus 290 ~~lL~~~--a~rGV~VriLv 307 (852)
.+.|.+| +.++-+|+|++
T Consensus 500 a~kI~~kir~~e~f~V~IVi 519 (758)
T PLN02352 500 ALKIASKIRAKERFAVYILI 519 (758)
T ss_pred HHHHHHHHhCCCCCEEEEEE
Confidence 7777776 56778899887
No 174
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.35 E-value=0.013 Score=64.24 Aligned_cols=98 Identities=19% Similarity=0.247 Sum_probs=75.9
Q ss_pred CCcEEEEEEC----CEEEeeeeeecCCCCCeeeeEEEEeecC---CC---------cEEEEEEEecCCcC--CceeeeEE
Q 003057 88 SDPYVTVSIC----GAVIGRTFVISNSESPVWMQHFNVPVAH---SA---------AEVHFVVKDNDFVG--SQIMGAVG 149 (852)
Q Consensus 88 ~DpYv~v~l~----~~~~~rT~vi~~t~nP~WnE~F~~~v~~---~~---------~~l~~~V~D~d~~~--~~~iG~~~ 149 (852)
.|-||.+.+- .....+|.||+++..|.++|.|.+.+.. .. --+.|.++....+- |.++|.+.
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~n 467 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGN 467 (523)
T ss_pred HHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceee
Confidence 4678887762 2334599999999999999999998865 11 23689999987664 78999999
Q ss_pred EeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEee
Q 003057 150 IPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (852)
Q Consensus 150 i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~ 188 (852)
+.|+-|....++...++|.+ .+| ..+|.|.++++..
T Consensus 468 ikle~Len~cei~e~~~l~D-GRK--~vGGkLevKvRiR 503 (523)
T KOG3837|consen 468 IKLEILENMCEICEYLPLKD-GRK--AVGGKLEVKVRIR 503 (523)
T ss_pred eeehhhhcccchhhceeccc-ccc--ccCCeeEEEEEEe
Confidence 99998888888888999954 344 3578888888754
No 175
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=95.26 E-value=0.024 Score=65.11 Aligned_cols=70 Identities=23% Similarity=0.412 Sum_probs=54.5
Q ss_pred CCCCcEEEEEEC-----CEEEeeeeeecCCCCCeeeeEEEEeecC-----CCcEEEEEEEecCCcC-CceeeeEEEeeee
Q 003057 86 ITSDPYVTVSIC-----GAVIGRTFVISNSESPVWMQHFNVPVAH-----SAAEVHFVVKDNDFVG-SQIMGAVGIPVEK 154 (852)
Q Consensus 86 g~~DpYv~v~l~-----~~~~~rT~vi~~t~nP~WnE~F~~~v~~-----~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~ 154 (852)
+++|||..+.-- ...+.||.+++|++||.|-+ |.++... ....+++.++|++..+ .++||++..++++
T Consensus 155 ~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~ 233 (529)
T KOG1327|consen 155 SKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSE 233 (529)
T ss_pred ccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHH
Confidence 348999887652 25567999999999999987 4444322 3367889999999887 5899999999988
Q ss_pred ec
Q 003057 155 LC 156 (852)
Q Consensus 155 l~ 156 (852)
+.
T Consensus 234 ~~ 235 (529)
T KOG1327|consen 234 LQ 235 (529)
T ss_pred hc
Confidence 76
No 176
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=94.97 E-value=0.2 Score=55.48 Aligned_cols=117 Identities=18% Similarity=0.205 Sum_probs=86.0
Q ss_pred EEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEe
Q 003057 43 LDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVP 122 (852)
Q Consensus 43 L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~~ 122 (852)
+-|.|+|+++.+... ...-.+..++++... .|-.+..+..|.||....+.
T Consensus 2 ivl~i~egr~F~~~~-----------------------------~~~~vv~a~~ng~~l-~TDpv~~~~~p~f~teL~WE 51 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP-----------------------------RHPIVVEAKFNGESL-ETDPVPHTESPQFNTELAWE 51 (340)
T ss_pred EEEEEecccCCCCCC-----------------------------CccEEEEEEeCCcee-eecCCCCCCCceeecceeee
Confidence 357899999988431 135688899999888 88888889999999999988
Q ss_pred ecCC--------CcEEEEEEEecC-CcC-CceeeeEEEeeeee---cCC--CeeeeeeecccCCCCCCCCCceeeeeEEe
Q 003057 123 VAHS--------AAEVHFVVKDND-FVG-SQIMGAVGIPVEKL---CSG--DKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (852)
Q Consensus 123 v~~~--------~~~l~~~V~D~d-~~~-~~~iG~~~i~l~~l---~~g--~~~~~w~~L~~~~~~~~~~~g~I~l~l~f 187 (852)
+... -..|++.++..| ..+ .+.||.+.++|... ..+ .....||+|++.+.+..+...+|.+.+..
T Consensus 52 ~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~i 131 (340)
T PF12416_consen 52 CDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSI 131 (340)
T ss_pred ccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEE
Confidence 7542 256889998877 333 78999999999877 444 45678999998743332334566666665
Q ss_pred ec
Q 003057 188 TP 189 (852)
Q Consensus 188 ~p 189 (852)
..
T Consensus 132 e~ 133 (340)
T PF12416_consen 132 ED 133 (340)
T ss_pred ec
Confidence 43
No 177
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.77 E-value=0.52 Score=45.41 Aligned_cols=118 Identities=22% Similarity=0.369 Sum_probs=77.6
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEE--EeeeeeecC-CCCCeeeeE
Q 003057 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAV--IGRTFVISN-SESPVWMQH 118 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~--~~rT~vi~~-t~nP~WnE~ 118 (852)
.+.|+|.+..+++..+ ...||....+... .+.|..... +..=.|||.
T Consensus 8 ~~~l~i~~l~~~p~~~------------------------------~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~ 57 (143)
T PF10358_consen 8 QFDLTIHELENLPSSN------------------------------GKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEE 57 (143)
T ss_pred EEEEEEEEeECcCCCC------------------------------CEEEEEEEECCCCccceeeeeeeccccEEEEeeE
Confidence 6789999999888521 2345555555443 345555433 455799999
Q ss_pred EEEeec----CC-----CcEEEEEEEecCCcCC-ceeeeEEEeeeeecCC--CeeeeeeecccCCCCCCCCCceeeeeEE
Q 003057 119 FNVPVA----HS-----AAEVHFVVKDNDFVGS-QIMGAVGIPVEKLCSG--DKIEGAFPILNSSRKPCKAGAVLSLSIQ 186 (852)
Q Consensus 119 F~~~v~----~~-----~~~l~~~V~D~d~~~~-~~iG~~~i~l~~l~~g--~~~~~w~~L~~~~~~~~~~~g~I~l~l~ 186 (852)
|.++|. .. ...+.|.|+.....+. ..+|.+.|+|.++.+. .....-++|... . +..+.|+++++
T Consensus 58 ~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~-~---~~~a~L~isi~ 133 (143)
T PF10358_consen 58 FSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC-K---KSNATLSISIS 133 (143)
T ss_pred EEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC-C---CCCcEEEEEEE
Confidence 987642 11 1457888888654344 5999999999999963 455566777443 1 34578899998
Q ss_pred eeccccc
Q 003057 187 YTPVENM 193 (852)
Q Consensus 187 f~p~~~~ 193 (852)
+.+....
T Consensus 134 ~~~~~~~ 140 (143)
T PF10358_consen 134 LSELRED 140 (143)
T ss_pred EEECccC
Confidence 8775544
No 178
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=94.54 E-value=0.59 Score=46.71 Aligned_cols=141 Identities=18% Similarity=0.302 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHHhccceEEEEEEecCceeEEEeCCCCchHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccccCCC
Q 003057 249 ESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTN 328 (852)
Q Consensus 249 ~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~ 328 (852)
+.....+.+.|+.|++...+.+| +-.+ + -.-+.+.|..+.++||++|||- ++.... |.
T Consensus 38 e~il~~Li~~l~k~~ef~IsVaF-------it~s-G-~sll~~~L~d~~~Kgvkgkilt-s~Ylnf------------Td 95 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVAF-------ITES-G-LSLLFDLLLDLVNKGVKGKILT-SDYLNF------------TD 95 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEEE-------eeCc-c-HHHHHHHHHHHhcCCceEEEec-ccccCc------------cC
Confidence 35689999999999998888876 4322 1 2677889999999999999996 443221 11
Q ss_pred cHHHHhhhcCCCeEEEeccCCCCCCCcccccccccccccCcccEEEEecCCCCCcccEEEEEcccccCCCccCCCCCCCC
Q 003057 329 DEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLF 408 (852)
Q Consensus 329 ~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~ 408 (852)
....++.+.-.+|+++.+.-. ...+|-|-.+.-.+. ...|++|+.|+++.=.-+
T Consensus 96 P~al~~Ll~~~nve~r~~~~~---------------~~~fH~KgYiFe~~~-----~~taiiGSsNlt~sALt~------ 149 (198)
T COG3886 96 PVALRKLLMLKNVELRVSTIG---------------SANFHTKGYIFEHNT-----GITAIIGSSNLTDSALTV------ 149 (198)
T ss_pred HHHHHHHHhhhccceEEEecC---------------ccccccceeEEEecc-----eEEEEEccchhhhhhccc------
Confidence 122455555566888766321 135777777755432 258999999999863211
Q ss_pred cccccccCCCCCCCCcCCCCCCCCCCCee-eccceeeChHHHHHHHHHHHHHhh
Q 003057 409 KTLETVHKDDYYNPSLLEPIAGGPREPWH-DLHCRIDGPAAYDILTNFEERWLK 461 (852)
Q Consensus 409 ~~~~~~~~~dy~n~~~~~~~~~~~~~pWh-Dv~~~i~Gpaa~dl~~~F~~rW~~ 461 (852)
-..|- -+...-.|..|..+...|...|..
T Consensus 150 ------------------------n~Ewn~k~s~~~~g~i~~~~k~~f~r~~~~ 179 (198)
T COG3886 150 ------------------------NEEWNLKVSSSKNGDIVKEVKVTFERQFQN 179 (198)
T ss_pred ------------------------CHHHHhhhccccccchHHHHHHHHHHHHHh
Confidence 11232 123344688899999999999983
No 179
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.44 E-value=0.19 Score=50.36 Aligned_cols=71 Identities=20% Similarity=0.317 Sum_probs=48.3
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEE--CCEEEe---eeeeecCCCCCe
Q 003057 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSI--CGAVIG---RTFVISNSESPV 114 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l--~~~~~~---rT~vi~~t~nP~ 114 (852)
+..+.|+|+.+.+|.-. ...++-||++.| ++..+. .|+.+.-+..+.
T Consensus 7 ~~~f~i~i~~~~~~~~~----------------------------~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~ 58 (173)
T cd08693 7 EEKFSITLHKISNLNAA----------------------------ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPV 58 (173)
T ss_pred CCCEEEEEEEeccCccC----------------------------CCCceEEEEEEEEECCEEccCceEccccCCCCccc
Confidence 45689999999998731 123577888766 555442 454444457799
Q ss_pred eeeEEEEe--ecCCC--cEEEEEEEecC
Q 003057 115 WMQHFNVP--VAHSA--AEVHFVVKDND 138 (852)
Q Consensus 115 WnE~F~~~--v~~~~--~~l~~~V~D~d 138 (852)
|||.+.|+ +.+.. +.|.|+||+..
T Consensus 59 Wnewl~F~I~i~dLPr~ArLciti~~~~ 86 (173)
T cd08693 59 WNETLEFDINVCDLPRMARLCFAIYEVS 86 (173)
T ss_pred cceeEEcccchhcCChhHeEEEEEEEec
Confidence 99966665 44433 78999999854
No 180
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.39 E-value=0.13 Score=50.82 Aligned_cols=67 Identities=16% Similarity=0.294 Sum_probs=47.6
Q ss_pred CCCCcEEEEEE--CCEEEe---eeeeecCCCCCeeeeEEEEee--cCCC--cEEEEEEEecCCcC-CceeeeEEEee
Q 003057 86 ITSDPYVTVSI--CGAVIG---RTFVISNSESPVWMQHFNVPV--AHSA--AEVHFVVKDNDFVG-SQIMGAVGIPV 152 (852)
Q Consensus 86 g~~DpYv~v~l--~~~~~~---rT~vi~~t~nP~WnE~F~~~v--~~~~--~~l~~~V~D~d~~~-~~~iG~~~i~l 152 (852)
..+|-||++.| ++..+. .|+.+.-+..+.|||-..|++ .+.. +.|.|+||+.+..+ ...||.+.++|
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~l 104 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSL 104 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEee
Confidence 44789999988 444332 565555577799999666664 4433 78999999976544 56888888876
No 181
>PLN02270 phospholipase D alpha
Probab=93.04 E-value=0.23 Score=60.10 Aligned_cols=58 Identities=19% Similarity=0.164 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHhccceEEEEE-EecCceeEEEeCC-----------CCchHHHHHHHHh--hhcCCeEEEEE
Q 003057 249 ESCWQDVYDAINQARRLIYITG-WSVYHTVRLVRDG-----------SNTLMLGDLLKIK--SQEGVRVLILA 307 (852)
Q Consensus 249 ~~~~~~l~~aI~~Ak~~I~I~~-w~~~p~~~l~r~~-----------~~~~~l~~lL~~~--a~rGV~VriLv 307 (852)
.+...+.++||++|+++|||+. |-++..+ -+..+ -.+..|...|.+| +.++-+|+|++
T Consensus 498 rsI~~aYi~AI~~A~~~IYIENQYF~sss~-~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIVi 569 (808)
T PLN02270 498 RSIQDAYIHAIRRAKDFIYIENQYFLGSSF-AWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVV 569 (808)
T ss_pred hHHHHHHHHHHHhhhhEEEeehhhhhhhhh-hhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence 4678999999999999999975 2222111 11100 0124555566665 66889999987
No 182
>PLN03008 Phospholipase D delta
Probab=92.47 E-value=0.83 Score=55.67 Aligned_cols=58 Identities=17% Similarity=0.109 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHhccceEEEEEEecCceeEEEeCC-------CCchHHHHHHHHh--hhcCCeEEEEE
Q 003057 250 SCWQDVYDAINQARRLIYITGWSVYHTVRLVRDG-------SNTLMLGDLLKIK--SQEGVRVLILA 307 (852)
Q Consensus 250 ~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~-------~~~~~l~~lL~~~--a~rGV~VriLv 307 (852)
.+..+.+++|++|+++|||+.=-|-...+.+... ..+..|...|.+| +.++-+|+|++
T Consensus 567 SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IVi 633 (868)
T PLN03008 567 SIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVI 633 (868)
T ss_pred hHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEE
Confidence 4579999999999999999752111111111111 1235566666665 66789999987
No 183
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=92.03 E-value=0.56 Score=47.00 Aligned_cols=88 Identities=16% Similarity=0.289 Sum_probs=55.8
Q ss_pred eceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEE--CCEEEe---eeeeec--C--
Q 003057 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSI--CGAVIG---RTFVIS--N-- 109 (852)
Q Consensus 39 l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l--~~~~~~---rT~vi~--~-- 109 (852)
....+.|+|..+.+++.... ...+|-||++.| ++..+. .|+... +
T Consensus 6 v~~~~~i~v~~~h~~~~~~~--------------------------~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f 59 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTWV--------------------------QSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSF 59 (171)
T ss_pred ccccEEEEEEEeecCChHHh--------------------------hccccEEEEEEEEECCEECcCceeccccccccCc
Confidence 34678999999999885421 123688999877 554442 333211 1
Q ss_pred CCCCeeeeEEEEee--cCC--CcEEEEEEEecCCcC----------CceeeeEEEee
Q 003057 110 SESPVWMQHFNVPV--AHS--AAEVHFVVKDNDFVG----------SQIMGAVGIPV 152 (852)
Q Consensus 110 t~nP~WnE~F~~~v--~~~--~~~l~~~V~D~d~~~----------~~~iG~~~i~l 152 (852)
...+.|||...|++ .+. .+.|.|+|++....+ ...||.+.++|
T Consensus 60 ~~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~L 116 (171)
T cd04012 60 FPRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPL 116 (171)
T ss_pred cccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEee
Confidence 33578999666654 333 378999999865432 24677777765
No 184
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=91.49 E-value=0.85 Score=44.85 Aligned_cols=86 Identities=21% Similarity=0.256 Sum_probs=55.5
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEE--CCEEEe---eeeeecCCCCCee
Q 003057 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSI--CGAVIG---RTFVISNSESPVW 115 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l--~~~~~~---rT~vi~~t~nP~W 115 (852)
..|+|+|....++...+ ....+-||++.| ++.... .|+....+.++.|
T Consensus 8 ~~~~i~i~~~~~~~~~~---------------------------~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~W 60 (156)
T cd08380 8 FNLRIKIHGITNINLLD---------------------------SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTW 60 (156)
T ss_pred CCeEEEEEeeccccccC---------------------------CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcc
Confidence 46788888887775411 122577888877 443221 3333333478999
Q ss_pred eeEEEEe--ecCC--CcEEEEEEEecCCcC---CceeeeEEEeee
Q 003057 116 MQHFNVP--VAHS--AAEVHFVVKDNDFVG---SQIMGAVGIPVE 153 (852)
Q Consensus 116 nE~F~~~--v~~~--~~~l~~~V~D~d~~~---~~~iG~~~i~l~ 153 (852)
||...|+ +.+. .+.|.|+|++.+..+ ...||.+.++|=
T Consensus 61 ne~l~F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lF 105 (156)
T cd08380 61 NEWLTFDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLF 105 (156)
T ss_pred cceeEccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeE
Confidence 9976666 4433 378999999966543 468999888873
No 185
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=91.08 E-value=0.72 Score=44.61 Aligned_cols=66 Identities=21% Similarity=0.350 Sum_probs=43.0
Q ss_pred CcEEEEEE--CCEEEe----eeeeecCC-CCCeeeeEEEEe--ecCC--CcEEEEEEEecCCcCC-----ceeeeEEEee
Q 003057 89 DPYVTVSI--CGAVIG----RTFVISNS-ESPVWMQHFNVP--VAHS--AAEVHFVVKDNDFVGS-----QIMGAVGIPV 152 (852)
Q Consensus 89 DpYv~v~l--~~~~~~----rT~vi~~t-~nP~WnE~F~~~--v~~~--~~~l~~~V~D~d~~~~-----~~iG~~~i~l 152 (852)
+-||++.| ++.... .|+.+.-+ .+|.|||...|+ +.+. .+.|.|+|+..+.... ..||.+.++|
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 45777777 554432 56665555 799999955555 4443 3789999998665543 5888888877
Q ss_pred ee
Q 003057 153 EK 154 (852)
Q Consensus 153 ~~ 154 (852)
=+
T Consensus 83 Fd 84 (142)
T PF00792_consen 83 FD 84 (142)
T ss_dssp B-
T ss_pred EC
Confidence 43
No 186
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=90.90 E-value=0.39 Score=51.08 Aligned_cols=81 Identities=17% Similarity=0.142 Sum_probs=62.9
Q ss_pred eeeeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCee
Q 003057 36 VLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVW 115 (852)
Q Consensus 36 ~~~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~W 115 (852)
+.-+.|.|-+.+++.++|+-... .|.-+.+-||.+..+.+..+||+|-....-=.|
T Consensus 46 ~~s~tGiL~~H~~~GRGLr~~p~------------------------~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w 101 (442)
T KOG1452|consen 46 LVSSTGILYFHAYNGRGLRMTPQ------------------------QKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAW 101 (442)
T ss_pred eecccceEEEEEecccccccChh------------------------ccCceeeeeeeeeecccCccccccccCCCCccc
Confidence 34567999999999999974321 124557899999999888889988766777789
Q ss_pred eeEEEEeecCCCcEEEEEEEecCCcC
Q 003057 116 MQHFNVPVAHSAAEVHFVVKDNDFVG 141 (852)
Q Consensus 116 nE~F~~~v~~~~~~l~~~V~D~d~~~ 141 (852)
.|+|++.+. ....+.+-||.|+..-
T Consensus 102 ~e~F~~Dvv-~~~vl~~lvySW~pq~ 126 (442)
T KOG1452|consen 102 AEDFKHDVV-NIEVLHYLVYSWPPQR 126 (442)
T ss_pred hhhceeecc-cceeeeEEEeecCchh
Confidence 999999885 3457888899888654
No 187
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=90.41 E-value=1.5 Score=44.01 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=32.2
Q ss_pred CcEEEEEE--CCEEEe--eeeeecCCCCCeeeeEEEEe--ecCCC--cEEEEEEEecC
Q 003057 89 DPYVTVSI--CGAVIG--RTFVISNSESPVWMQHFNVP--VAHSA--AEVHFVVKDND 138 (852)
Q Consensus 89 DpYv~v~l--~~~~~~--rT~vi~~t~nP~WnE~F~~~--v~~~~--~~l~~~V~D~d 138 (852)
.-||++.| ++.... +|+....+.+|.|||-..|+ +.+.. +.|.|+|++..
T Consensus 31 ~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 31 TVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred EEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 35666655 333221 56666667889999965555 44433 78999999853
No 188
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=89.72 E-value=2 Score=37.93 Aligned_cols=65 Identities=17% Similarity=0.251 Sum_probs=51.2
Q ss_pred CCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEeecCCCcEEEEEEEecCCcCCceeeeEEEeeeeec
Q 003057 88 SDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLC 156 (852)
Q Consensus 88 ~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~~v~~~~~~l~~~V~D~d~~~~~~iG~~~i~l~~l~ 156 (852)
++-.|.+.+++..+|.|.-. ...+..|++.|.|.+. -+.+|++.|+=.|. ..+-|-..+.|++..
T Consensus 9 ~eV~avLklDn~~VgqT~Wk-~~s~q~WDQ~Fti~Ld-RsRELEI~VywrD~--RslCav~~lrLEd~~ 73 (98)
T cd08687 9 SEVSAVLKLDNTVVGQTQWK-PKSNQAWDQSFTLELE-RSRELEIAVYWRDW--RSLCAVKFLKLEDER 73 (98)
T ss_pred cceEEEEEEcCeEEeecccc-ccccccccceeEEEee-cccEEEEEEEEecc--hhhhhheeeEhhhhc
Confidence 67889999999999999764 3568999999999994 66789999976553 346666677777743
No 189
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=89.61 E-value=1.4 Score=48.47 Aligned_cols=137 Identities=19% Similarity=0.189 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHhcc-----ceEEEEEEecCceeEEEeCCCCchHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccc
Q 003057 250 SCWQDVYDAINQAR-----RLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGI 324 (852)
Q Consensus 250 ~~~~~l~~aI~~Ak-----~~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~ 324 (852)
+.|+.+++.|++|- .+|-|+-|.+. ....+.++|++||+.|-+|.++| .-.. . .+.-
T Consensus 18 ~sf~~vv~fl~eAA~DP~V~aIk~TLYR~a----------~~S~iv~aLi~AA~nGK~Vtv~v-ELkA-R------FDEe 79 (352)
T PF13090_consen 18 ESFDPVVDFLREAAEDPDVLAIKITLYRVA----------SNSPIVNALIEAAENGKQVTVLV-ELKA-R------FDEE 79 (352)
T ss_dssp B-TCHHHHHHHHHCC-TTEEEEEEEESSS-----------TT-HHHHHHHHHHHTT-EEEEEE-STTS-S------STTC
T ss_pred cccHHHHHHHHHHhcCCCccEEEEEEEecC----------CCCHHHHHHHHHHHcCCEEEEEE-EEec-c------ccHH
Confidence 46888899999984 57888877432 23789999999999999999998 3211 1 0100
Q ss_pred cCCCcHHHHhhhcCCCeEEEeccCCCCCCCcccccccccccccCcccEEEEecCCCCCcccEEEEEcccccCCCccCCCC
Q 003057 325 MSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPA 404 (852)
Q Consensus 325 ~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~r~Dt~~ 404 (852)
.+-.+.+.|+.+|++|.+--+ .+--|-|+++|=.+..+ .-+..+++|-=|....
T Consensus 80 ---~Ni~Wa~~Le~aGv~ViyG~~----------------glKvHaK~~lI~R~e~~-~~~~Y~hlgTGNyNe~------ 133 (352)
T PF13090_consen 80 ---NNIHWAKRLEEAGVHVIYGVP----------------GLKVHAKICLIVRREGG-GLRRYAHLGTGNYNEK------ 133 (352)
T ss_dssp ---CCCCCCHHHHHCT-EEEE--T----------------T-EE--EEEEEEEEETT-EEEEEEEEESS-SSTT------
T ss_pred ---HHhHHHhhHHhcCeEEEcCCC----------------ChhheeeEEEEEEEeCC-cEEEEEEEcCCCcCcc------
Confidence 011244567889999986421 13579999999664322 2345777776664432
Q ss_pred CCCCcccccccCCCCCCCCcCCCCCCCCCCCeeeccceeeCh-HHHHHHHHHHH
Q 003057 405 HPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGP-AAYDILTNFEE 457 (852)
Q Consensus 405 H~~~~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gp-aa~dl~~~F~~ 457 (852)
. -.-+-|+++.-.-| .+.|+...|..
T Consensus 134 --------------------------T-Ar~YtD~~l~Ta~~~i~~D~~~~F~~ 160 (352)
T PF13090_consen 134 --------------------------T-ARIYTDLSLFTADPEIGADVAKLFNY 160 (352)
T ss_dssp --------------------------H-CCCEEEEEEEE--HHHHHHHHHHHHH
T ss_pred --------------------------c-hhheecceeecCCHHHHHHHHHHHHH
Confidence 0 12467888877776 58899999864
No 190
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=89.42 E-value=1.8 Score=42.43 Aligned_cols=100 Identities=13% Similarity=0.184 Sum_probs=67.3
Q ss_pred cEEEEEECCEEEeeeeeecCCCCCeeeeEEEEeecCCC--------------cEEEEEEEecCCcC-CceeeeEEEeeee
Q 003057 90 PYVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHSA--------------AEVHFVVKDNDFVG-SQIMGAVGIPVEK 154 (852)
Q Consensus 90 pYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~~v~~~~--------------~~l~~~V~D~d~~~-~~~iG~~~i~l~~ 154 (852)
-++-+.+++++. +|+.+..+.+|.++|.|-|++.... +.+.+.|.-.|..+ ..++|...+.-..
T Consensus 36 ~~l~l~f~~QRF-~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~ 114 (156)
T PF15627_consen 36 FTLHLHFRGQRF-RSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRK 114 (156)
T ss_pred EEEEEEecCceE-ecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHH
Confidence 355566688998 9999999999999999999886542 34666676666555 4788988888877
Q ss_pred ecCCCee--eeeeecccCCCCCCCCCceeeeeEEeecc
Q 003057 155 LCSGDKI--EGAFPILNSSRKPCKAGAVLSLSIQYTPV 190 (852)
Q Consensus 155 l~~g~~~--~~w~~L~~~~~~~~~~~g~I~l~l~f~p~ 190 (852)
+...+.. ..-..|.+......-..|-|.++++..|.
T Consensus 115 vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 115 VLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred HhccCCCccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 6643332 23344544332211134788888887664
No 191
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=87.08 E-value=0.75 Score=53.17 Aligned_cols=85 Identities=22% Similarity=0.381 Sum_probs=60.8
Q ss_pred EEEeeeeeecCCCCCeeeeEEEEeecCCC-cEEEEEEEecCCc-----CCceeeeEEEeeeeecCCCeeeeeeecccCCC
Q 003057 99 AVIGRTFVISNSESPVWMQHFNVPVAHSA-AEVHFVVKDNDFV-----GSQIMGAVGIPVEKLCSGDKIEGAFPILNSSR 172 (852)
Q Consensus 99 ~~~~rT~vi~~t~nP~WnE~F~~~v~~~~-~~l~~~V~D~d~~-----~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~ 172 (852)
..++||.++.+.+||.|-+.|.+....+. +.++|.++|.+.. ..+|+|++...++++.+...... ++.-.++
T Consensus 40 ~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~--~l~~~~~ 117 (529)
T KOG1327|consen 40 EEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTG--PLLLKPG 117 (529)
T ss_pred ccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhh--hhhcccC
Confidence 46679999999999999999999876655 7899999997654 25899999999999885433322 2222333
Q ss_pred CCCCCCceeeeeEE
Q 003057 173 KPCKAGAVLSLSIQ 186 (852)
Q Consensus 173 ~~~~~~g~I~l~l~ 186 (852)
++ ...|+|.+.++
T Consensus 118 ~~-~~~g~iti~ae 130 (529)
T KOG1327|consen 118 KN-AGSGTITISAE 130 (529)
T ss_pred cc-CCcccEEEEee
Confidence 33 24456665555
No 192
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=87.07 E-value=3.3 Score=37.51 Aligned_cols=51 Identities=20% Similarity=0.327 Sum_probs=34.0
Q ss_pred CCcEEEEEE--CCEEEe---eeeeecCCCCCeeeeEEEEee--cCCC--cEEEEEEEecC
Q 003057 88 SDPYVTVSI--CGAVIG---RTFVISNSESPVWMQHFNVPV--AHSA--AEVHFVVKDND 138 (852)
Q Consensus 88 ~DpYv~v~l--~~~~~~---rT~vi~~t~nP~WnE~F~~~v--~~~~--~~l~~~V~D~d 138 (852)
+|-||++.| ++..+. .|+.+.-+..+.|||-..|++ .+.. +.|.|+|++..
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 588999877 444332 555544466699999666554 4433 78999999843
No 193
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=85.57 E-value=4 Score=40.76 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=55.5
Q ss_pred CCcEEEEEECCEEEeeeeeecC--CCCCeeeeEEEEeecCCCcEEEEEEEecCCcCCceeeeEEEeeee
Q 003057 88 SDPYVTVSICGAVIGRTFVISN--SESPVWMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEK 154 (852)
Q Consensus 88 ~DpYv~v~l~~~~~~rT~vi~~--t~nP~WnE~F~~~v~~~~~~l~~~V~D~d~~~~~~iG~~~i~l~~ 154 (852)
..-|++|.++++.|.+|+...- ...=.+||.|.+.+..--+.|.+.||.....++.+|+++.+||-.
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~ 105 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPG 105 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCC
Confidence 4679999999999999987543 333567999999998777899999999887678999999999843
No 194
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=84.85 E-value=5 Score=40.86 Aligned_cols=52 Identities=12% Similarity=0.294 Sum_probs=36.9
Q ss_pred EeeeeeecCCCCCeeeeEEEEeecCC---CcEEEEEEEecCCcC--C---ceeeeEEEee
Q 003057 101 IGRTFVISNSESPVWMQHFNVPVAHS---AAEVHFVVKDNDFVG--S---QIMGAVGIPV 152 (852)
Q Consensus 101 ~~rT~vi~~t~nP~WnE~F~~~v~~~---~~~l~~~V~D~d~~~--~---~~iG~~~i~l 152 (852)
..+|-|..-+.+|.|||++.+.++-. ...|.|++++..... + ..+|-+.+||
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 34888888899999999999887643 367999998755321 1 3455555555
No 195
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=84.03 E-value=3.5 Score=41.74 Aligned_cols=53 Identities=9% Similarity=0.142 Sum_probs=31.1
Q ss_pred eeeeeecCCCCCeeeeEEEEeecCCC---cEEEEEEEecCCcC--C--ceeeeEEEeeee
Q 003057 102 GRTFVISNSESPVWMQHFNVPVAHSA---AEVHFVVKDNDFVG--S--QIMGAVGIPVEK 154 (852)
Q Consensus 102 ~rT~vi~~t~nP~WnE~F~~~v~~~~---~~l~~~V~D~d~~~--~--~~iG~~~i~l~~ 154 (852)
..|.|...+.+|.|+|+|.+.++... ..|.|++++..... . ..+|-+.+||-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 47888888899999999998876443 67999999865432 1 577777777654
No 196
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=83.95 E-value=5.6 Score=43.36 Aligned_cols=40 Identities=35% Similarity=0.347 Sum_probs=29.2
Q ss_pred EEEEeeEEEE-e---ceEEEEeccCCCC-CCcCCCCCCceEEEeecC
Q 003057 700 IYIHSKGMIV-D---DEYVIIGSANINQ-RSLEGTRDTEIAMGAYQP 741 (852)
Q Consensus 700 iyvHSKlmIV-D---D~~~iIGSANln~-RSm~g~~DsEi~v~i~d~ 741 (852)
+-+|+|+.+. . +.-++||||||.. -.+. .+-.| +++..|+
T Consensus 79 ~~~HgKlY~f~k~g~~~~a~IGSANfS~~~~~~-~~~~E-~~v~~D~ 123 (296)
T PF09565_consen 79 PPYHGKLYIFSKNGKPFRAYIGSANFSQINGFT-RRQYE-AMVTCDP 123 (296)
T ss_pred CCcccEEEEEecCCCceEEEEeecccccccccc-cccee-EEEecCh
Confidence 4789999999 2 4689999999988 3332 26778 5555555
No 197
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=82.65 E-value=2.6 Score=42.74 Aligned_cols=51 Identities=20% Similarity=0.490 Sum_probs=35.8
Q ss_pred eeeeeecCCCCCeeeeEEEEeecCC---CcEEEEEEEecCCcC---CceeeeEEEee
Q 003057 102 GRTFVISNSESPVWMQHFNVPVAHS---AAEVHFVVKDNDFVG---SQIMGAVGIPV 152 (852)
Q Consensus 102 ~rT~vi~~t~nP~WnE~F~~~v~~~---~~~l~~~V~D~d~~~---~~~iG~~~i~l 152 (852)
.+|-|..-+.+|.|||++.+.++-. ...|.|++++..... ...+|-+.+||
T Consensus 55 ~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 55 YRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred EEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 4888888899999999999887643 367999888754332 13455444444
No 198
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=79.60 E-value=0.5 Score=55.76 Aligned_cols=92 Identities=13% Similarity=0.033 Sum_probs=63.4
Q ss_pred CCcEEEEEECCEEEeeeeeecCCCCCeeeeEEEEeecCCCcEEEEEEEecCCcC-CceeeeEEEeeeeecC-CCeeeeee
Q 003057 88 SDPYVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS-GDKIEGAF 165 (852)
Q Consensus 88 ~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~~v~~~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~-g~~~~~w~ 165 (852)
.|||+.|.+.-...+.+.+...+..|.|||+|.+.+ +....+.+.|+.....+ +.....+++-.+++.. ....+.|.
T Consensus 28 l~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v-~~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~w~ 106 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGAENMTKVELRIPELRETFHVEV-VAGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRLWV 106 (694)
T ss_pred hhhhheeccceeecccccCCCCCCCchhhhheeeee-ecCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhhcc
Confidence 699999999888877887777899999999999996 45667888888876554 4445555554444442 22345687
Q ss_pred ecccCCCCCCCCCceeeeeEEee
Q 003057 166 PILNSSRKPCKAGAVLSLSIQYT 188 (852)
Q Consensus 166 ~L~~~~~~~~~~~g~I~l~l~f~ 188 (852)
.+ .+. |++...+.+.
T Consensus 107 ~~-~~~-------g~~~~~~~~~ 121 (694)
T KOG0694|consen 107 LI-EEL-------GTLLKPAALT 121 (694)
T ss_pred cc-ccc-------cceeeeeccc
Confidence 75 333 4555555544
No 199
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=77.19 E-value=3.6 Score=45.30 Aligned_cols=92 Identities=17% Similarity=0.260 Sum_probs=55.5
Q ss_pred HHHHHHHHHHcCCCceEEEEecCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCceeeeccCCcc
Q 003057 590 IALKIANKIRANERFAAYILIPMWPEGITTSPQIQRILYWQHKTMQMMYETIYKALVESGLQNKYVPQDYLNFFCLGNRE 669 (852)
Q Consensus 590 ia~~ia~~~~~~~gv~V~IvlP~~peg~~~~~~~~~i~~~~~~t~~~~~~~~~~~L~~~Gv~~~~~p~~y~~~~~l~~~~ 669 (852)
++.++.+|. +.|=+|.+++-...-.+ +..+ ++| .+.|.++|+++.|.-
T Consensus 52 iv~aLi~AA--~nGK~Vtv~vELkARFD-Ee~N----i~W------------a~~Le~aGv~ViyG~------------- 99 (352)
T PF13090_consen 52 IVNALIEAA--ENGKQVTVLVELKARFD-EENN----IHW------------AKRLEEAGVHVIYGV------------- 99 (352)
T ss_dssp HHHHHHHHH--HTT-EEEEEESTTSSST-TCCC----CCC------------CHHHHHCT-EEEE---------------
T ss_pred HHHHHHHHH--HcCCEEEEEEEEecccc-HHHH----hHH------------HhhHHhcCeEEEcCC-------------
Confidence 556666653 45777888887654221 1122 233 467899999886520
Q ss_pred ccCCCCCCCCCCCCCCCchHHHhhccCeeeEEEEeeEEEEe-------ceEEEEeccCCCCCCcCCCCCCceEEEeecCc
Q 003057 670 ALDGVDSSNAKDSTAANTPQALAKKNRRFQIYIHSKGMIVD-------DEYVIIGSANINQRSLEGTRDTEIAMGAYQPR 742 (852)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVD-------D~~~iIGSANln~RSm~g~~DsEi~v~i~d~~ 742 (852)
...-||||+++|= -+|+-||+.|+|...-. .=|.+++.--+++
T Consensus 100 ----------------------------~glKvHaK~~lI~R~e~~~~~~Y~hlgTGNyNe~TAr--~YtD~~l~Ta~~~ 149 (352)
T PF13090_consen 100 ----------------------------PGLKVHAKICLIVRREGGGLRRYAHLGTGNYNEKTAR--IYTDLSLFTADPE 149 (352)
T ss_dssp ----------------------------TT-EE--EEEEEEEEETTEEEEEEEEESS-SSTTHCC--CEEEEEEEE--HH
T ss_pred ----------------------------CChhheeeEEEEEEEeCCcEEEEEEEcCCCcCccchh--heecceeecCCHH
Confidence 0247999999885 38999999999998876 5677777766665
Q ss_pred c
Q 003057 743 H 743 (852)
Q Consensus 743 ~ 743 (852)
.
T Consensus 150 i 150 (352)
T PF13090_consen 150 I 150 (352)
T ss_dssp H
T ss_pred H
Confidence 3
No 200
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=74.95 E-value=1.5 Score=52.88 Aligned_cols=119 Identities=16% Similarity=0.209 Sum_probs=74.7
Q ss_pred ceeeeeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecC
Q 003057 34 LKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISN 109 (852)
Q Consensus 34 ~~~~~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~----~~~~rT~vi~~ 109 (852)
....++.|.|++.+.+|..|++- ..-||+..++. ...++|++|.+
T Consensus 752 ~eSpl~ygflh~~vhsat~lkqs-------------------------------~~lY~Td~v~e~~~~~s~~st~~iad 800 (1112)
T KOG4269|consen 752 DESPLLYGFLHVIVHSATGLKQS-------------------------------RNLYCTDEVDEFGYFVSKASTRVIAD 800 (1112)
T ss_pred ccCcccccceeeeeccccccccc-------------------------------cceeeehhhhhhccccccccceeeec
Confidence 44456779999999999999742 35688877742 34479999999
Q ss_pred CCCCeeeeEEEEeecCCCcEEEEEEEecCCc-----------CCceeeeEEEeeeeecCCCeeeeeeecc-cCCCCCCCC
Q 003057 110 SESPVWMQHFNVPVAHSAAEVHFVVKDNDFV-----------GSQIMGAVGIPVEKLCSGDKIEGAFPIL-NSSRKPCKA 177 (852)
Q Consensus 110 t~nP~WnE~F~~~v~~~~~~l~~~V~D~d~~-----------~~~~iG~~~i~l~~l~~g~~~~~w~~L~-~~~~~~~~~ 177 (852)
+..|.||+.|++++.. .+...+..++++.. .+...|+..+-+.--. .....|+.-. +.+|
T Consensus 801 T~~~~~npe~hv~~~~-sqS~r~~~~ek~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~--~~d~d~~t~v~~~n~----- 872 (1112)
T KOG4269|consen 801 TAEPQWNPEKHVPVIE-SQSSRLEKTEKSTPVEKLIDSHSQNSQNEEKRSRMKLDPQP--HHDADWYTQVIDMNG----- 872 (1112)
T ss_pred ccCCCCChhcccchhh-ccccchhhhcccchHHHhhhccchhhcccccccccccCccc--cccccCccChhhhcC-----
Confidence 9999999999999853 23444444443311 1335555555443211 1123465432 2333
Q ss_pred CceeeeeEEeecccc
Q 003057 178 GAVLSLSIQYTPVEN 192 (852)
Q Consensus 178 ~g~I~l~l~f~p~~~ 192 (852)
..+...+.|.+.+.
T Consensus 873 -~~ve~~v~~ssss~ 886 (1112)
T KOG4269|consen 873 -IVVETSVKFSSSST 886 (1112)
T ss_pred -cceeeeEEeccccc
Confidence 35677788877554
No 201
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=73.82 E-value=8.7 Score=38.68 Aligned_cols=50 Identities=12% Similarity=0.205 Sum_probs=34.5
Q ss_pred eeeeecCCCCCeeeeEEEEeecCC---CcEEEEEEEecCCcC------CceeeeEEEeee
Q 003057 103 RTFVISNSESPVWMQHFNVPVAHS---AAEVHFVVKDNDFVG------SQIMGAVGIPVE 153 (852)
Q Consensus 103 rT~vi~~t~nP~WnE~F~~~v~~~---~~~l~~~V~D~d~~~------~~~iG~~~i~l~ 153 (852)
+|-+.. ..+|.|||+|.+.++.. ...|.|++++.+... ...+|-+.+||-
T Consensus 56 ~sv~~~-~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~ 114 (178)
T cd08679 56 TSVVYY-HKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLM 114 (178)
T ss_pred EEEEEc-CCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEecc
Confidence 444444 49999999999887543 367999999865332 346777766664
No 202
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=73.25 E-value=19 Score=33.13 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=49.2
Q ss_pred EEEEEECCEEEeeeeeecCCCCCeeeeEEEEeecCCC--------cEEEEEEEecCCcCCceeeeEEEeeeeecC--CCe
Q 003057 91 YVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHSA--------AEVHFVVKDNDFVGSQIMGAVGIPVEKLCS--GDK 160 (852)
Q Consensus 91 Yv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~~v~~~~--------~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~--g~~ 160 (852)
||++++-.-....|.++. ..+|..|-+-++.|.-.. ..+.+.+...-......||.+.+++.++.. +..
T Consensus 2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~ 80 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGER 80 (107)
T ss_dssp EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--
T ss_pred EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCce
Confidence 567777554443777766 889999997666664332 557777766432224699999999999883 335
Q ss_pred eeeeeecccCCCCCCCCCceeeeeEEe
Q 003057 161 IEGAFPILNSSRKPCKAGAVLSLSIQY 187 (852)
Q Consensus 161 ~~~w~~L~~~~~~~~~~~g~I~l~l~f 187 (852)
+.....|.+.+++. -|.|.+.++.
T Consensus 81 i~~~~~l~g~~~~~---~g~l~y~~rl 104 (107)
T PF11618_consen 81 IHGSATLVGVSGED---FGTLEYWIRL 104 (107)
T ss_dssp EEEEEEE-BSSS-T---SEEEEEEEEE
T ss_pred EEEEEEEeccCCCe---EEEEEEEEEe
Confidence 66777887777764 3888877764
No 203
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=70.53 E-value=16 Score=36.83 Aligned_cols=53 Identities=13% Similarity=0.183 Sum_probs=37.4
Q ss_pred EEeeeeeecCCCCCeeeeEEEEeecCCC---cEEEEEEEecCCcC-------CceeeeEEEee
Q 003057 100 VIGRTFVISNSESPVWMQHFNVPVAHSA---AEVHFVVKDNDFVG-------SQIMGAVGIPV 152 (852)
Q Consensus 100 ~~~rT~vi~~t~nP~WnE~F~~~v~~~~---~~l~~~V~D~d~~~-------~~~iG~~~i~l 152 (852)
..+.|.|...+.+|.|+|+|.+.++-.. .-|.|+.++.+... ...+|-+.+||
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL 116 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPL 116 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEee
Confidence 4468888888999999999998876432 56899998855322 13456555555
No 204
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=67.73 E-value=42 Score=33.96 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhccceEEEeeccccccCCCcccccccCCCCccHHHH-HHHHHHHHHcCCCceEEEEecCC
Q 003057 544 SIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANNLIPMEI-ALKIANKIRANERFAAYILIPMW 613 (852)
Q Consensus 544 sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~i-a~~ia~~~~~~~gv~V~IvlP~~ 613 (852)
-|...++..|+.|+.|..+. -|+..+ +..+ ...+.. ..++|++++|+....
T Consensus 39 ~il~~Li~~l~k~~ef~IsV--aFit~s---------------G~sll~~~L~d--~~~Kgvkgkilts~Y 90 (198)
T COG3886 39 KILPRLIDELEKADEFEISV--AFITES---------------GLSLLFDLLLD--LVNKGVKGKILTSDY 90 (198)
T ss_pred hHHHHHHHHHhcCCeEEEEE--EEeeCc---------------cHHHHHHHHHH--HhcCCceEEEecccc
Confidence 58999999999999988887 355443 1111 111222 248899999999764
No 205
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=61.98 E-value=24 Score=35.77 Aligned_cols=39 Identities=8% Similarity=0.220 Sum_probs=31.2
Q ss_pred EEeeeeeecCCCCCeeeeEEEEeecCC---CcEEEEEEEecC
Q 003057 100 VIGRTFVISNSESPVWMQHFNVPVAHS---AAEVHFVVKDND 138 (852)
Q Consensus 100 ~~~rT~vi~~t~nP~WnE~F~~~v~~~---~~~l~~~V~D~d 138 (852)
+-+.|.|...+.+|.|+|++.+.++-. ..-|.|+.++.+
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 456899988899999999998876543 256999999865
No 206
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=61.33 E-value=3.8 Score=47.60 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=27.5
Q ss_pred eEEEEeeEEEEec-------eEEEEeccCCCCCCcCCC----------CCCceEEEee
Q 003057 699 QIYIHSKGMIVDD-------EYVIIGSANINQRSLEGT----------RDTEIAMGAY 739 (852)
Q Consensus 699 ~iyvHSKlmIVDD-------~~~iIGSANln~RSm~g~----------~DsEi~v~i~ 739 (852)
.+..|+|+++... .|+++|||||-.-.+ |. +|.|++|++.
T Consensus 346 ~~~pH~K~y~~~~~~~~~~~~W~~lgShNLS~aAW-G~~~~~~~~l~i~nyElGVl~~ 402 (443)
T PF06087_consen 346 RAPPHIKTYMRFSKNDFKSLGWFYLGSHNLSKAAW-GKRSKNGSQLSIRNYELGVLFL 402 (443)
T ss_dssp TS-B--EEEEEEE-TTTSEECEEEEES--BSHHHH--EEETTTTCCEESSBEEEEEEE
T ss_pred CcCcceEEEEEecCCCCCccceEEeCcccCCHHHh-cccccCCceeeecceEEEEEEe
Confidence 4678999999986 699999999965444 23 7999999983
No 207
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=58.36 E-value=24 Score=37.11 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHhccceEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecC
Q 003057 543 MSIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPM 612 (852)
Q Consensus 543 ~sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~ 612 (852)
..|.+-..++|++|++.|||..+.=. -.++...|.+| .++|+.|.+++..
T Consensus 9 ~~I~~~i~elI~~Ae~eI~is~~~~~------------------l~~l~~~L~~a--~~rGV~V~li~~~ 58 (233)
T PF11495_consen 9 ETILERIRELIENAESEIYISIPPEF------------------LEELRDELEEA--VDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHC-SSEEEEEE-GGG------------------HHHHHHHHHHH--HHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHHhheEEEEEcCHHH------------------HHHHHHHHHHH--HHCCCEEEEEEeC
Confidence 47889999999999999999975321 12344444443 3689999999976
No 208
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=57.85 E-value=30 Score=41.19 Aligned_cols=41 Identities=24% Similarity=0.435 Sum_probs=31.2
Q ss_pred EEEEeeEEEEe-------ceEEEEeccCCCCCCcCCCCCCceEEEeecCc
Q 003057 700 IYIHSKGMIVD-------DEYVIIGSANINQRSLEGTRDTEIAMGAYQPR 742 (852)
Q Consensus 700 iyvHSKlmIVD-------D~~~iIGSANln~RSm~g~~DsEi~v~i~d~~ 742 (852)
.-+|||+++|= -+|+=+|+.|.|..+-. .=|.+++..-|++
T Consensus 436 lKtHAKm~lVvRrE~~~lrrY~HlGTGNYn~~TAr--iYTD~sl~Tad~~ 483 (696)
T COG0855 436 LKTHAKMLLVVRREGGKLRRYVHLGTGNYNPKTAR--LYTDLSLLTADPE 483 (696)
T ss_pred eeeeeeEEEEEEecCCcEEEEEEecCCCCCcccee--eeeechhccCCHH
Confidence 47999999884 27999999999998876 4555666555554
No 209
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=48.94 E-value=18 Score=41.27 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=34.1
Q ss_pred eeeeEEEeeee-ecCCCeeeeeeecccCCCCCCCCCceeeeeEEeecc
Q 003057 144 IMGAVGIPVEK-LCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTPV 190 (852)
Q Consensus 144 ~iG~~~i~l~~-l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~p~ 190 (852)
++|.+.||+.. +..|...+.||++.+...+.. +.+.+ ++++|...
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~-~~~~l-lk~~~~~~ 46 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSV-GEGLI-IKVSSEEN 46 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCc-CcceE-EEEEeeec
Confidence 48999999999 556778999999988665543 45666 67777543
No 210
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=41.34 E-value=99 Score=33.99 Aligned_cols=92 Identities=11% Similarity=0.085 Sum_probs=61.0
Q ss_pred CcEEEEEECCEEEeeeeeecCCCCC--eeeeEEEEeecCCCcEEEEEEEecCCcCCceeeeEEEeee-eecC-CCeeeee
Q 003057 89 DPYVTVSICGAVIGRTFVISNSESP--VWMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVE-KLCS-GDKIEGA 164 (852)
Q Consensus 89 DpYv~v~l~~~~~~rT~vi~~t~nP--~WnE~F~~~v~~~~~~l~~~V~D~d~~~~~~iG~~~i~l~-~l~~-g~~~~~w 164 (852)
.-|+++..+...+ +|..+.-+..- .=.|...+.+..-...|.+.|+-....+...||.+.|.+. ++.. .-+...|
T Consensus 75 hiyIef~~Gr~d~-TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLvkk~hIgdI~InIn~dIIdk~FPKnkW 153 (508)
T PTZ00447 75 HIYIIFSTDKYDF-TTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLTKKVHIGQIKIDINASVISKSFPKNEW 153 (508)
T ss_pred eEEEEEEcCceEE-EccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccccceeEEEEEEecccHHHHhccCCccce
Confidence 4688999888777 66555433322 2234555555544567899999988888999999999984 3443 4467889
Q ss_pred eecccCCCCCCCCCceeeeeE
Q 003057 165 FPILNSSRKPCKAGAVLSLSI 185 (852)
Q Consensus 165 ~~L~~~~~~~~~~~g~I~l~l 185 (852)
|-+ ..+|+.. ++|.+++
T Consensus 154 y~c-~kDGq~~---cRIqLSF 170 (508)
T PTZ00447 154 FVC-FKDGQEI---CKVQMSF 170 (508)
T ss_pred EEE-ecCCcee---eeEEEEe
Confidence 999 4566532 4544443
No 211
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=33.19 E-value=2.6e+02 Score=31.87 Aligned_cols=102 Identities=18% Similarity=0.230 Sum_probs=60.1
Q ss_pred CCCCcEEEEEECCEEEeeeeeecC--C--CCC-eeee---EEEEeecC------CC------cEEEEEEEecCC------
Q 003057 86 ITSDPYVTVSICGAVIGRTFVISN--S--ESP-VWMQ---HFNVPVAH------SA------AEVHFVVKDNDF------ 139 (852)
Q Consensus 86 g~~DpYv~v~l~~~~~~rT~vi~~--t--~nP-~WnE---~F~~~v~~------~~------~~l~~~V~D~d~------ 139 (852)
-++.+||+|+|.+--. +|-.+.= + .+| .=+- .|++.-+. .. ..|++.||--..
T Consensus 34 ssspCfC~IrL~~fP~-Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv 112 (460)
T PF06219_consen 34 SSSPCFCEIRLKGFPS-QTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGV 112 (460)
T ss_pred CCCCeEEEEecCCCCc-cceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccc
Confidence 3467899999987655 4544321 1 221 1111 67664221 11 468899987332
Q ss_pred -cCCceeeeEEEeeeeecC--CCe---eeeeeecccCCC-CCCCCCceeeeeEEeec
Q 003057 140 -VGSQIMGAVGIPVEKLCS--GDK---IEGAFPILNSSR-KPCKAGAVLSLSIQYTP 189 (852)
Q Consensus 140 -~~~~~iG~~~i~l~~l~~--g~~---~~~w~~L~~~~~-~~~~~~g~I~l~l~f~p 189 (852)
.+..+||++++||. +.. +.. ..+|..|-..+. +..+...+||+.++-.|
T Consensus 113 ~~~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~Ep 168 (460)
T PF06219_consen 113 GNSGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEP 168 (460)
T ss_pred cccceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccC
Confidence 23579999999996 432 222 368999943322 12235689999998544
No 212
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=29.01 E-value=1.1e+02 Score=31.90 Aligned_cols=50 Identities=28% Similarity=0.433 Sum_probs=31.5
Q ss_pred HHHHHHHHhcc---ceEEEEEEecCceeEEEeCCCCc---hHHHHHHHHhhhcCCe-E--EEEEeCCC
Q 003057 253 QDVYDAINQAR---RLIYITGWSVYHTVRLVRDGSNT---LMLGDLLKIKSQEGVR-V--LILAWDDP 311 (852)
Q Consensus 253 ~~l~~aI~~Ak---~~I~I~~w~~~p~~~l~r~~~~~---~~l~~lL~~~a~rGV~-V--riLvwD~~ 311 (852)
+.+.++|+.|+ ..++|.+ |+.+++.. .-|..+|+.++++||+ | .++. |+.
T Consensus 14 ~~l~~~~~~~k~~~~~lHl~G--------LlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~-DGR 72 (223)
T PF06415_consen 14 PVLLEAIEHAKKNGGRLHLMG--------LLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFT-DGR 72 (223)
T ss_dssp HHHHHHHHHHCCTT--EEEEE--------EESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE--SS
T ss_pred HHHHHHHHHHHhcCCeEEEEE--------EecCCCccccHHHHHHHHHHHHHcCCCEEEEEEec-CCC
Confidence 35555566655 5899999 67776542 7788888889999976 5 4443 653
No 213
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=26.65 E-value=1.5e+02 Score=25.11 Aligned_cols=56 Identities=16% Similarity=0.322 Sum_probs=32.4
Q ss_pred ceeccCCcccCchhHHHHHHHHHHhccceEEEEEEecCceeEEEeCCC-Cc-hHHHHHHHHhhhcCCeEEE
Q 003057 237 DLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGS-NT-LMLGDLLKIKSQEGVRVLI 305 (852)
Q Consensus 237 ~i~~~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~-~~-~~l~~lL~~~a~rGV~Vri 305 (852)
.|.+.+|+.|.+ ++.+.++++++.... |.+.|+..+. .| .+|.+ ..+.++||.+..
T Consensus 5 rVli~GgR~~~D---~~~i~~~Ld~~~~~~--------~~~~lvhGga~~GaD~iA~--~wA~~~gv~~~~ 62 (71)
T PF10686_consen 5 RVLITGGRDWTD---HELIWAALDKVHARH--------PDMVLVHGGAPKGADRIAA--RWARERGVPVIR 62 (71)
T ss_pred EEEEEECCcccc---HHHHHHHHHHHHHhC--------CCEEEEECCCCCCHHHHHH--HHHHHCCCeeEE
Confidence 455667777754 444555665555443 4455777655 44 34433 345678887754
No 214
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=26.60 E-value=4.2e+02 Score=31.58 Aligned_cols=115 Identities=14% Similarity=0.181 Sum_probs=72.0
Q ss_pred eceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeE
Q 003057 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQH 118 (852)
Q Consensus 39 l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~ 118 (852)
|.=.++|.|.|..+|+.... .-=-||++.+.+.++ .|--. ....|.|...
T Consensus 339 la~smevvvmevqglksvap----------------------------nrivyctmevegekl-qtdqa-easkp~wgtq 388 (1218)
T KOG3543|consen 339 LALSMEVVVMEVQGLKSVAP----------------------------NRIVYCTMEVEGEKL-QTDQA-EASKPKWGTQ 388 (1218)
T ss_pred EEeeeeEEEeeeccccccCC----------------------------CeeEEEEEEeccccc-ccchh-hhcCCCCCcC
Confidence 55578999999999985421 112599999999887 66432 3667999986
Q ss_pred EEEeecCCCcEEEEEEEecC--Cc--CCceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEE
Q 003057 119 FNVPVAHSAAEVHFVVKDND--FV--GSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQ 186 (852)
Q Consensus 119 F~~~v~~~~~~l~~~V~D~d--~~--~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~ 186 (852)
=.|.-.|+-..+.+.++-.. .+ .|.-+|++.+--. ........|+.+.-++..+. ..-+|++-++
T Consensus 389 gdfstthplpvvkvklftestgvlaledkelgrvil~pt--pns~ks~ewh~mtvpknsqd-qdlkiklavr 457 (1218)
T KOG3543|consen 389 GDFSTTHPLPVVKVKLFTESTGVLALEDKELGRVILQPT--PNSAKSPEWHTMTVPKNSQD-QDLKIKLAVR 457 (1218)
T ss_pred CCcccCCCCceeEEEEEeecceeEEeechhhCeEEEecC--CCCcCCccceeeecCCCCcC-ccceEEEEEe
Confidence 66666666555666665533 22 3678998776322 22333457988865554332 2234444443
No 215
>PRK05434 phosphoglyceromutase; Provisional
Probab=25.30 E-value=1.6e+02 Score=34.74 Aligned_cols=50 Identities=28% Similarity=0.395 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhccceEEEEEEecCceeEEEeCCCCc---hHHHHHHHHhhhcCC-eEEEEE
Q 003057 250 SCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNT---LMLGDLLKIKSQEGV-RVLILA 307 (852)
Q Consensus 250 ~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~---~~l~~lL~~~a~rGV-~VriLv 307 (852)
+.|.++++...+....++|.+ |+.+++.. .-|..+|+.++++|| +|+|=+
T Consensus 96 ~~~~~~~~~~~~~~~~lHl~G--------L~SdggVHsh~~hl~~l~~~a~~~g~~~v~vH~ 149 (507)
T PRK05434 96 PALLDAIDKAKKNGGALHLMG--------LLSDGGVHSHIDHLFALLELAKEEGVKKVYVHA 149 (507)
T ss_pred HHHHHHHHHHHhcCCeEEEEE--------eccCCCcccHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 455555555555568899999 66776542 778888899999999 777644
No 216
>PF06087 Tyr-DNA_phospho: Tyrosyl-DNA phosphodiesterase; InterPro: IPR010347 Covalent intermediates between topoisomerase I and DNA can become dead-end complexes that lead to cell death. Tyrosyl-DNA phosphodiesterase can hydrolyse the bond between topoisomerase I and DNA [].; GO: 0008081 phosphoric diester hydrolase activity, 0006281 DNA repair, 0005634 nucleus; PDB: 3SQ8_A 3SQ5_B 3SQ3_A 1Q32_D 3SQ7_A 1QZQ_A 1RGU_B 1RG2_B 1MU9_B 1RFI_B ....
Probab=24.48 E-value=50 Score=38.41 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=23.3
Q ss_pred EEEEeeEEEE---ec-eEEEEeccCCCCCCcCCCCCCceEEEeec
Q 003057 700 IYIHSKGMIV---DD-EYVIIGSANINQRSLEGTRDTEIAMGAYQ 740 (852)
Q Consensus 700 iyvHSKlmIV---DD-~~~iIGSANln~RSm~g~~DsEi~v~i~d 740 (852)
.--|||+||. |+ --++|.||||...-+. +-|=++-+-|
T Consensus 100 g~hHsKm~ll~y~~~~lRVvI~TaNl~~~Dw~---~~~q~vw~~d 141 (443)
T PF06087_consen 100 GTHHSKMMLLFYEDGSLRVVIPTANLTPYDWN---NKTQGVWIQD 141 (443)
T ss_dssp --B--EEEEEEETTCEEEEEEESS-BSHHHHC---SSB-EEEE--
T ss_pred ccccceeEEEEeCCccEEEEEECCCCCHHHHC---CcceeEEEec
Confidence 3679999998 66 7899999999887664 4555555543
No 217
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=23.87 E-value=1.5e+02 Score=33.43 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhccceEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCC
Q 003057 544 SIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMW 613 (852)
Q Consensus 544 sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~ 613 (852)
..++.+.+.|.+||+.|+|.+=|.--. ..++...+..++..+..++|-|++...
T Consensus 39 ~fy~~lk~~I~~aq~Ri~lasLYlG~~----------------E~elv~cl~~aL~~~~~L~v~iLlD~~ 92 (469)
T KOG3964|consen 39 EFYQRLKKLIKKAQRRIFLASLYLGKL----------------ERELVDCLSNALEKNPSLKVSILLDFL 92 (469)
T ss_pred HHHHHHHHHHHHhhheeeeeeeccchh----------------HHHHHHHHHHHhccCCCcEEEeehhhh
Confidence 578889999999999999999887543 457888898999899999999999764
No 218
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=21.23 E-value=1.4e+02 Score=27.48 Aligned_cols=58 Identities=24% Similarity=0.430 Sum_probs=39.2
Q ss_pred cEEEEEEEecCC---cC-CceeeeEEEeeeeec--------------CCCeeeeeeecccCCCCCCCCCceeeeeEEee
Q 003057 128 AEVHFVVKDNDF---VG-SQIMGAVGIPVEKLC--------------SGDKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (852)
Q Consensus 128 ~~l~~~V~D~d~---~~-~~~iG~~~i~l~~l~--------------~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~ 188 (852)
..|.+.+++-.. .. ..+||.+.+++.+.. ......+-|+|.+..+++. |+|.+.++..
T Consensus 29 ~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~~---G~I~l~iRLs 104 (112)
T PF14924_consen 29 FPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNPV---GEISLYIRLS 104 (112)
T ss_pred CceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCcee---eeEEEEEEEe
Confidence 346666655322 23 569999999987665 1224567899999888755 8888777643
No 219
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=20.92 E-value=2.2e+02 Score=33.64 Aligned_cols=46 Identities=28% Similarity=0.476 Sum_probs=33.0
Q ss_pred HHHHHHHhc---cceEEEEEEecCceeEEEeCCCCc---hHHHHHHHHhhhcCC-eEEEEE
Q 003057 254 DVYDAINQA---RRLIYITGWSVYHTVRLVRDGSNT---LMLGDLLKIKSQEGV-RVLILA 307 (852)
Q Consensus 254 ~l~~aI~~A---k~~I~I~~w~~~p~~~l~r~~~~~---~~l~~lL~~~a~rGV-~VriLv 307 (852)
.+.++|+.| ...++|.+ |+.+++.. .-|..+|+.++++|| +|+|=+
T Consensus 93 ~l~~~~~~~~~~~~~lHl~G--------L~SdGgVHsh~~hl~~l~~~a~~~g~~~v~vH~ 145 (501)
T TIGR01307 93 ALLGAIDRAKDNNGKLHLMG--------LVSDGGVHSHIDHLIALIELAAERGIEKVVLHA 145 (501)
T ss_pred HHHHHHHHHHhcCCceEEEE--------eccCCCCcchHHHHHHHHHHHHHcCCCeEEEEE
Confidence 344445554 47899999 66776542 788889999999999 676644
No 220
>TIGR00230 sfsA sugar fermentation stimulation protein. probable regulatory factor involved in maltose metabolism contains a putative DNA binding domain. Isolated as a gene which enabled E.coli strain MK2001 to use maltose.
Probab=20.86 E-value=3.3e+02 Score=28.76 Aligned_cols=54 Identities=15% Similarity=0.153 Sum_probs=33.4
Q ss_pred HHHHHHHHHhccceEEEEEEecCceeEEEeC-CCCchHHHHHHHHhhhcCCeEEEEE
Q 003057 252 WQDVYDAINQARRLIYITGWSVYHTVRLVRD-GSNTLMLGDLLKIKSQEGVRVLILA 307 (852)
Q Consensus 252 ~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~-~~~~~~l~~lL~~~a~rGV~VriLv 307 (852)
.+.+.+++++ .+.+.+ .--.-++...+++ ......+.++|.+|.+.||+|..+-
T Consensus 159 L~eL~~l~~~-~ra~vl-F~vqr~d~~~f~p~~~~Dp~fa~~l~~A~~~GVev~a~~ 213 (232)
T TIGR00230 159 LRELEEILKE-SRAVVL-FVVALPSVRAFSPNREGDEEYYRLLRRAHEAGVEVRPYQ 213 (232)
T ss_pred HHHHHHHHHh-CCEEEE-EEEeCCCCCEEeeCcccCHHHHHHHHHHHHCCCEEEEEE
Confidence 5566666666 333222 2112233444443 3345899999999999999998764
No 221
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=20.78 E-value=1.5e+02 Score=26.82 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=35.2
Q ss_pred CCcccCch--hHHHHHHHHHHhc----cceEEEEEEecCceeEEEeCCCC--chHHHHHHHHhhhcCCeEEEEEeC
Q 003057 242 GGVQFNHE--SCWQDVYDAINQA----RRLIYITGWSVYHTVRLVRDGSN--TLMLGDLLKIKSQEGVRVLILAWD 309 (852)
Q Consensus 242 ~g~~y~~~--~~~~~l~~aI~~A----k~~I~I~~w~~~p~~~l~r~~~~--~~~l~~lL~~~a~rGV~VriLvwD 309 (852)
.|..|... ++|.-+++.+++- ...|-+..= +.-+..... -..|.++|.+++++|.+|.|- |-
T Consensus 15 ~GeSypEn~~~Fy~Pi~~wl~~Yl~~~~~~i~~~~~-----L~YfNTSSsk~l~~i~~~Le~~~~~g~~V~v~-Wy 84 (99)
T PF09345_consen 15 SGESYPENAFAFYQPILDWLEAYLAEPNKPITFNFK-----LSYFNTSSSKALMDIFDLLEDAAQKGGKVTVN-WY 84 (99)
T ss_pred ecccCccCHHHHHHHHHHHHHHHHhCCCCcEEEEEE-----EEEEecHhHHHHHHHHHHHHHHHhcCCcEEEE-EE
Confidence 34455433 3577777776654 233433221 111222211 267778888889999999998 63
No 222
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=20.24 E-value=2.2e+02 Score=35.41 Aligned_cols=48 Identities=19% Similarity=0.329 Sum_probs=28.2
Q ss_pred CCcEEEEEE----CCEEEeeeee---ecCCCCCeeee--EEEEeecCCC--cEEEEEEE
Q 003057 88 SDPYVTVSI----CGAVIGRTFV---ISNSESPVWMQ--HFNVPVAHSA--AEVHFVVK 135 (852)
Q Consensus 88 ~DpYv~v~l----~~~~~~rT~v---i~~t~nP~WnE--~F~~~v~~~~--~~l~~~V~ 135 (852)
.|-+|.|.. |+....+|+. +..+.+|.||| .|.|.+.+.- ..|.|.|+
T Consensus 361 ~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i~ 419 (1076)
T KOG0904|consen 361 VDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAIY 419 (1076)
T ss_pred cceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeeee
Confidence 566666655 4555444333 33378899999 5566665543 45555554
No 223
>PF07615 Ykof: YKOF-related Family; InterPro: IPR011522 This entry represents YkoF-related proteins. YkoF is involved in the hydroxymethyl pyrimidine (HMP) salvage pathway []. The domain is found in pairs in these proteins.; PDB: 1S7H_A 1S99_A 1SBR_B.
Probab=20.05 E-value=2.6e+02 Score=24.20 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=43.3
Q ss_pred CceeEEeecccccCCCccceeccCCcccCchhHHHHHHHHHHhcc-ceEEEEEEecCceeEEEeCCCC--chHHHHHHHH
Q 003057 219 GGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQAR-RLIYITGWSVYHTVRLVRDGSN--TLMLGDLLKI 295 (852)
Q Consensus 219 g~~v~l~~dg~~~~~~~~~i~~~~g~~y~~~~~~~~l~~aI~~Ak-~~I~I~~w~~~p~~~l~r~~~~--~~~l~~lL~~ 295 (852)
|+++.||.-|.. +..+.|.++|+.++ .-+++.+-.++. .++.+.. -..|.++..+
T Consensus 3 ~a~~SLYPmg~~-------------------dy~~~I~~~i~~~~~~gl~~~t~~~sT---~l~G~~~~Vf~~l~~~~~~ 60 (81)
T PF07615_consen 3 GAQFSLYPMGTD-------------------DYMDVILGAIDRLDDSGLWVETDHYST---QLRGDEEDVFDALEAAFER 60 (81)
T ss_dssp EEEEEEEETTST-------------------THHHHHHHHHHHCHHTTSEEEEETTEE---EEECBHHHHHHHHHHHHHH
T ss_pred eEEEEecccCCc-------------------cHHHHHHHHHHHHhhcCcEEeecccEE---EEECCHHHHHHHHHHHHHH
Confidence 678899987641 35688888998886 457776655544 4554321 2566666666
Q ss_pred hhhcCCeEEEE
Q 003057 296 KSQEGVRVLIL 306 (852)
Q Consensus 296 ~a~rGV~VriL 306 (852)
++++|..|-+-
T Consensus 61 a~~~~~H~v~~ 71 (81)
T PF07615_consen 61 AAEEGPHVVMV 71 (81)
T ss_dssp HHCCSSSEEEE
T ss_pred HhccCCeEEEE
Confidence 78888766543
Done!