BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003058
(852 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BKN5|GCP5_MOUSE Gamma-tubulin complex component 5 OS=Mus musculus GN=Tubgcp5 PE=2
SV=2
Length = 1024
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 51/247 (20%)
Query: 631 VIMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFN 690
+ ++ CL +I KQ H ++ L D+RL++ L +R +L+ GD + F T IF+
Sbjct: 685 LTLRSCLYPHIDKQYLHCCGNLMQTLKRDFRLVEYLQAMRNFFLMEGGDTMYDFYTSIFD 744
Query: 691 KLDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLAS 750
K+ + E W + LN LQE++ D+L + I S N+ +
Sbjct: 745 KIREKETWQNVSFLNVQLQEAVGQRY------PEDSLRLSI------------SFENVDT 786
Query: 751 TPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALD-- 808
T +K + LD L +YKV WP++++ ++E K YNQV LL++K AK++LD
Sbjct: 787 TKKK-----LPVHILDGLTLSYKVPWPVDIVISVECQKIYNQVFLLLLQIKWAKYSLDVL 841
Query: 809 -------KARRWMWK----------------GRSLATNSHSHKRHWLVEQKLLHFVDAFH 845
A R K SL H R +L+ KL+HFV++ H
Sbjct: 842 LFGELGNAAERSQAKEDIPRDQDTPSQFGPPKESLRQQIH---RMFLLRVKLMHFVNSLH 898
Query: 846 QYVMDRV 852
Y+M R+
Sbjct: 899 NYIMTRI 905
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 132/327 (40%), Gaps = 34/327 (10%)
Query: 39 EVDLVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFI-YAATCL 97
E ++R L +L G+ +F + V+ I VTHL+ + VL Q Y
Sbjct: 267 ETQVIRETLWLLSGVKK-MFIFQLIDGKVTVRNNIIVTHLTHSCLRSVLEQIAAYGQVVF 325
Query: 98 KLVEISVTRVETTGRISSPT-------------LRAFSSAVSAWLKMFRGIALKEEMKIT 144
+L E + V S P R + + + A K F I KEE+
Sbjct: 326 RLQEF-IDEVMGHSSESLPPGNGPIPKKQPDAPFRTYQAFMWALYKYF--INFKEELTDI 382
Query: 145 ESNVGNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQFNMPVPAAQVAVHILDYLY 204
E V ++ T + LA ++ L L +++D + A H+L+ LY
Sbjct: 383 EKCVISSDTTITLAIVVNKLAPRLAQL-KVLDKVFSTGVAEVPPDTRNVVRASHLLNTLY 441
Query: 205 KKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAIS 264
K + E V + +L ++V ++ PY++ +D W+ G L D E N+ +
Sbjct: 442 KAILEYDNVGEASEQTVSLLFSLWVETVRPYLQTVDEWIVHGHLWDGAREFIIQRNKNVP 501
Query: 265 VDKAEFWEKSYVLRQLQCWKLDAESSSLTSESSHVRETNEKRQNGLRESISLSSSVKGLQ 324
V+ +FW +Y L + S T V ++ + S ++
Sbjct: 502 VNHRDFWYATYTLYSV---------SEKTENEDKVSDSASASSGSDQGPSSRQHTMVS-- 550
Query: 325 ACPLFIKDIAKSIISAGKSLQLIRHVS 351
F+K + K II AGKS+QL+++++
Sbjct: 551 ----FLKPVLKQIIMAGKSMQLLKNLN 573
>sp|Q95K09|GCP5_MACFA Gamma-tubulin complex component 5 (Fragment) OS=Macaca fascicularis
GN=TUBGCP5 PE=2 SV=2
Length = 725
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 117/247 (47%), Gaps = 51/247 (20%)
Query: 631 VIMQECLTVYIKKQ-VDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIF 689
+ ++ CL +I KQ +D G L + L D+RL++ L +R +L+ GD + F T IF
Sbjct: 386 LTLRSCLYPHIDKQYLDCCGNL-MQTLKKDYRLVEYLQAMRNFFLMEGGDTMYDFYTSIF 444
Query: 690 NKLDKGENWDDDFELNTLLQESI--RNSADGKLLSAPDALEVLITESHGSNSDEQPSMAN 747
+K+ + E W + LN LQE++ R D LS S N
Sbjct: 445 DKIREKETWQNVSFLNVQLQEAVGQRYPEDSSRLSI--------------------SFEN 484
Query: 748 LASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFAL 807
+ + +K H +DGL L +YKV WP++++ ++E K YNQV LL++K AK++L
Sbjct: 485 VDTAKKKLPVHI--LDGLTL---SYKVPWPVDIVISLECQKIYNQVFLLLLQIKWAKYSL 539
Query: 808 D--------------KARRWMWKGRSLATNSHSHK--------RHWLVEQKLLHFVDAFH 845
D + + + + + K R +L+ KL+HFV++ H
Sbjct: 540 DVLLFGELVSTAEKPRLQEGLVREQDTVAQFGPQKEPVRQQIHRMFLLRVKLMHFVNSLH 599
Query: 846 QYVMDRV 852
Y+M R+
Sbjct: 600 NYIMTRI 606
Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 125/297 (42%), Gaps = 43/297 (14%)
Query: 73 IYVTHLSLKSVHVVLNQFI-YAATCLKLVEI--------SVTRVETTGRI----SSPTLR 119
I VTHL+ + VL Q Y +L + S + + +G + + R
Sbjct: 1 IIVTHLTHSCLRSVLEQIAAYGQVVFRLQQFIDEVMGHSSESMLPGSGSVPKKSTEAPFR 60
Query: 120 AFSSAVSAWLKMFRGIALKEEMKITESNVGN---TPTLLGLASSLSSLCSGGEYLLQIVD 176
+ + + A K F I+ KEE+ E + N T TL + L+ + + L ++
Sbjct: 61 TYQAFMWALYKYF--ISSKEELAEIEKCIINNDATITLAIVVDKLAPRLAQLKVLHKVFS 118
Query: 177 GAIPQVCFQFNMPVPAAQV--AVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLP 234
+ +V P V A H+L+ LYK + E V + +L ++V ++ P
Sbjct: 119 TGVAEV------PPDTRNVVRASHLLNTLYKAILEYDDVGEASEQTVSLLFSLWVETVRP 172
Query: 235 YIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAEFWEKSYVLRQLQCWKLDAES-SSLT 293
Y++ +D W+ G L D E N+ + V+ +FW +Y L + + E S
Sbjct: 173 YLQTVDEWIVHGHLWDGAREFIIQRNKNVPVNHRDFWYATYTLYSVSEKTENEEKMSDNA 232
Query: 294 SESSHVRETNEKRQNGLRESISLSSSVKGLQACPLFIKDIAKSIISAGKSLQLIRHV 350
S SS + RQ+ + F+K + K II AGKS+QL++++
Sbjct: 233 SASSGSDQGPSSRQHTMVS----------------FLKPVLKQIIMAGKSMQLLKNL 273
>sp|Q96RT8|GCP5_HUMAN Gamma-tubulin complex component 5 OS=Homo sapiens GN=TUBGCP5 PE=1
SV=1
Length = 1024
Score = 90.1 bits (222), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 114/247 (46%), Gaps = 51/247 (20%)
Query: 631 VIMQECLTVYIKKQ-VDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIF 689
+ ++ CL +I KQ +D G L + L D+RL++ L +R +L+ GD + F T IF
Sbjct: 685 LTLRSCLYPHIDKQYLDCCGNL-MQTLKKDYRLVEYLQAMRNFFLMEGGDTMYDFYTSIF 743
Query: 690 NKLDKGENWDDDFELNTLLQESI--RNSADGKLLSAPDALEVLITESHGSNSDEQPSMAN 747
+K+ + E W + LN LQE++ R D LS S N
Sbjct: 744 DKIREKETWQNVSFLNVQLQEAVGQRYPEDSSRLSI--------------------SFEN 783
Query: 748 LASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFAL 807
+ + +K + LD L +YKV WP++++ ++E K YNQV LL++K AK++L
Sbjct: 784 VDTAKKK-----LPVHILDGLTLSYKVPWPVDIVISLECQKIYNQVFLLLLQIKWAKYSL 838
Query: 808 D--------------KARRWMWKGRSLATNSHSHK--------RHWLVEQKLLHFVDAFH 845
D + + + + K R +L+ KL+HFV++ H
Sbjct: 839 DVLLFGELVSTAEKPRLKEGLIHEQDTVAQFGPQKEPVRQQIHRMFLLRVKLMHFVNSLH 898
Query: 846 QYVMDRV 852
Y+M R+
Sbjct: 899 NYIMTRI 905
Score = 73.6 bits (179), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 136/332 (40%), Gaps = 44/332 (13%)
Query: 38 NEVDLVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFI-YAATC 96
E ++R L +L G+ LF + V+ I VTHL+ + VL Q Y
Sbjct: 266 TETQVIRETLWLLSGVKK-LFIFQLIDGKVTVRNNIIVTHLTHSCLRSVLEQIAAYGQVV 324
Query: 97 LKLVEI--------SVTRVETTGRI----SSPTLRAFSSAVSAWLKMFRGIALKEEMKIT 144
+L E S + + +G + + R + + + A K F I+ KEE+
Sbjct: 325 FRLQEFIDEVMGHSSESMLPGSGSVPKKSTEAPFRTYQAFMWALYKYF--ISFKEELAEI 382
Query: 145 ESNVGNTPTLLGLA---SSLSSLCSGGEYLLQIVDGAIPQVCFQFNMPVPAAQV--AVHI 199
E + N T + LA L+ S + L ++ + +V P V A H+
Sbjct: 383 EKCIINNDTTITLAIVVDKLAPRLSQLKVLHKVFSTGVAEV------PPDTRNVVRASHL 436
Query: 200 LDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYA 259
L+ LYK + E V + +L ++V ++ PY++ +D W+ G L D E
Sbjct: 437 LNTLYKAILEYDNVGEASEQTVSLLFSLWVETVRPYLQTVDEWIVHGHLWDGAREFIIQR 496
Query: 260 NRAISVDKAEFWEKSYVLRQLQCWKLDAESSSLTSESSHVRETNEKRQNGLRESISLSSS 319
N+ + V+ +FW +Y L + S E EK + S
Sbjct: 497 NKNVPVNHRDFWYATYTLYSV----------------SEKTENEEKMSDNASASSGSDQG 540
Query: 320 VKGLQACPL-FIKDIAKSIISAGKSLQLIRHV 350
Q + F+K + K II AGKS+QL++++
Sbjct: 541 PSSRQHTMVSFLKPVLKQIIMAGKSMQLLKNL 572
>sp|Q96RT7|GCP6_HUMAN Gamma-tubulin complex component 6 OS=Homo sapiens GN=TUBGCP6 PE=1
SV=3
Length = 1819
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 104/243 (42%), Gaps = 18/243 (7%)
Query: 38 NEVDLVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCL 97
E +LV+ VL +L G+ S+ F + ++F VK G++V+ S +S+ +L++ TC
Sbjct: 348 KECELVKDVLNVLIGVVSATFSLCQPAQAFVVKRGVHVSGASPESISSLLSEVAEYGTCY 407
Query: 98 -KLVEISVTRVETTGRISSPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTLLG 156
+L S+ V + +AF+S + +L+ +R L ++ +G LG
Sbjct: 408 TRLSHFSLQPVLDSLYSKGLVFQAFTSGLRRYLQYYRACVLSTPPTLSLLTIGFLFKKLG 467
Query: 157 LA-SSLSSLCSGGEYLLQIVDGAIPQVCFQFNMPVPAAQVAVHILDYLYKKLDEVCLVQG 215
L+ LC G L G P+ F V +L YLY++ C
Sbjct: 468 RQLRYLAELCGVGAVLPGTCGGG-PRAAF---------PTGVKLLSYLYQEALHNC---- 513
Query: 216 GEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRA-ISVDKAEFWEKS 274
E Y +LL + S PY + W++ G+ D Y E N +S +W
Sbjct: 514 -SNEHYPVLLSLLKTSCEPYTRFIHDWVYSGVFRDAYGEFMIQVNHEYLSFRDKLYWTHG 572
Query: 275 YVL 277
YVL
Sbjct: 573 YVL 575
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 25/227 (11%)
Query: 631 VIMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFN 690
V+M+ +T + + + K + + L LR L+ G+ Q ++F
Sbjct: 1482 VLMKRSITAPLAAHISLVNKAAVDYFFVELHLEAHYEALRHFLLMEDGEFAQSLSDLLFE 1541
Query: 691 KLDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLAS 750
KL G+ + LN L+ S+ + A L HG + P +NL S
Sbjct: 1542 KLGAGQTPGE--LLNPLVLNSVLSKA-------------LQCSLHG----DTPHASNL-S 1581
Query: 751 TPRKSHPHSFGIDGLDLL---KFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFAL 807
K P F + D+L + YKV WPL ++ + KY+ V FLL++K +AL
Sbjct: 1582 LALKYLPEVFAPNAPDVLSCLELRYKVDWPLNIVITEGCVSKYSGVFSFLLQLKLMMWAL 1641
Query: 808 DKARRWMWKGRSLA--TNSHSHKRHWLVEQKLLHFVDAFHQYVMDRV 852
+ + L+ S ++ L + ++ HFV Y+ +++
Sbjct: 1642 KDVCFHLKRTALLSHMAGSVQFRQLQLFKHEMQHFVKVIQGYIANQI 1688
>sp|Q9UGJ1|GCP4_HUMAN Gamma-tubulin complex component 4 OS=Homo sapiens GN=TUBGCP4 PE=1
SV=1
Length = 667
Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 87/217 (40%), Gaps = 14/217 (6%)
Query: 639 VYIKKQVDHIGKLILSNLMNDWRLMDE-------LAVLRAIYLLGSGDLLQHFLTVIFNK 691
V ++ VD I + +L W+LM E L +++ YLLG G+L Q F+ +
Sbjct: 323 VDFEQVVDRIRSTVAEHL---WKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHM 379
Query: 692 LDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLAST 751
L + ++N Q+S P + E HG + A +
Sbjct: 380 LKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTI--EYHGKEHKADATQAREGPS 437
Query: 752 PRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKAR 811
R++ P G L +YKV WPL ++ ++KYN V +LL V+R + L
Sbjct: 438 -RETSPREAPASGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCW 496
Query: 812 RWMWKGRSLATNSHSHKRHWLVEQKLLHFVDAFHQYV 848
+ + L +N + W + + VD Y+
Sbjct: 497 ALQMQRKHLKSNQTDAIK-WRLRNHMAFLVDNLQYYL 532
>sp|Q9D4F8|GCP4_MOUSE Gamma-tubulin complex component 4 OS=Mus musculus GN=Tubgcp4 PE=2
SV=2
Length = 667
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 87/218 (39%), Gaps = 16/218 (7%)
Query: 639 VYIKKQVDHIGKLILSNLMNDWRLMDE-------LAVLRAIYLLGSGDLLQHFLTVIFNK 691
V ++ VD I + +L W+LM E L +++ YLLG G+L Q F+ +
Sbjct: 323 VDFEQVVDRIRSTVAEHL---WKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHM 379
Query: 692 LDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLAST 751
L + ++N Q+S P + E HG D +
Sbjct: 380 LKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTI--EYHGK--DHKADATQPREV 435
Query: 752 P-RKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKA 810
P R++ P G L +YKV WPL ++ ++KYN V +LL V+R + L
Sbjct: 436 PSRETSPREAPSSGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHC 495
Query: 811 RRWMWKGRSLATNSHSHKRHWLVEQKLLHFVDAFHQYV 848
+ + L +N + W + + VD Y+
Sbjct: 496 WALQMQRKHLKSNQ-TDAVKWRLRNHMAFLVDNLQYYL 532
>sp|Q95ZG4|SPC98_DICDI Spindle pole body component 98 OS=Dictyostelium discoideum GN=spc98
PE=1 SV=2
Length = 813
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 32/225 (14%)
Query: 632 IMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNK 691
++QE + + ++ + + K++L N ++ M+ + L+ LLG GD +Q+ + +I
Sbjct: 471 VLQEIIELVSRQSSERLLKIVL----NRFKFMNHVKALKKYLLLGQGDFIQYLMDLIGED 526
Query: 692 LDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLAST 751
L K + +L + +IRNS + +EQ + L
Sbjct: 527 LLKPTSQIQRHKLVGWMDTAIRNS--------------------NAQFEEQDIVNRLDIA 566
Query: 752 PRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKAR 811
P G G D+ Y V PL I + I +Y ++ F+ +KR +++L
Sbjct: 567 LLPERP---GNIGWDIFSLDYHVDTPLNTILSPNDILRYKKIFHFMWGIKRVEYSLASIW 623
Query: 812 RWMWKGRSLATNS----HSHKRHWLVEQKLLHFVDAFHQYVMDRV 852
R + SL+ S HK H L+ +++HF+ F Y+M V
Sbjct: 624 RKIRSSTSLSILSPIGGDIHKSH-LIMNEMVHFISNFQYYLMFEV 667
Score = 33.9 bits (76), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 39/78 (50%), Gaps = 15/78 (19%)
Query: 213 VQGGEV------------EEYQMLLH-IFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYA 259
++GGE+ ++ ++L+H I P + W+F+G ++DPY+E F
Sbjct: 294 MKGGEILSKIDTLSKHGDQDIRILIHNIMFKICQPLFSMIRLWMFKGEINDPYQEFFIRQ 353
Query: 260 NRAISVDKAEFWEKSYVL 277
++ ++K W++ + +
Sbjct: 354 YESVQLEKT--WKEKFAI 369
>sp|Q9BSJ2|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1
SV=2
Length = 902
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 90/225 (40%), Gaps = 24/225 (10%)
Query: 641 IKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKG-ENWD 699
I+K ++ K++L LM + L+ L ++ +L+ GD HF+ + +L K E+
Sbjct: 488 IEKAFNYASKVLLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMDLAEEELRKPVEDIT 547
Query: 700 DDFELNTLLQESIRNSA-------DGKLLSAPDALEVLITESHGSNSDEQPSMANLASTP 752
L ++A D K+ P L + + ++ +MA+
Sbjct: 548 PPRLEALLELALRMSTANTDPFKDDLKIDLMPHDLITQLLRVLAIETKQEKAMAH----- 602
Query: 753 RKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARR 812
+ P + GL+ F Y V WPL LI N +A+ +Y + + K + L
Sbjct: 603 --ADPTELALSGLEAFSFDYIVKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCS--- 657
Query: 813 WMWKGRSLATNSHSHKRHWL-----VEQKLLHFVDAFHQYVMDRV 852
+W A H W + Q++L+FV Y+M V
Sbjct: 658 -VWISNKTAKQHSLHSAQWFAGAFTLRQRMLNFVQNIQYYMMFEV 701
Score = 38.5 bits (88), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 216 GEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAE------ 269
G+ + ++ L++ + PY E L+ W++ G++ DPY E F + ++ +
Sbjct: 368 GDSQAQELCLYLTKAASAPYFEVLEKWIYRGIIHDPYSE-FMVEEHELRKERIQEDYNDK 426
Query: 270 FWEKSYVLRQLQ 281
+W++ Y + Q Q
Sbjct: 427 YWDQRYTIVQQQ 438
>sp|Q921G8|GCP2_MOUSE Gamma-tubulin complex component 2 OS=Mus musculus GN=Tubgcp2 PE=2
SV=2
Length = 905
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/282 (20%), Positives = 112/282 (39%), Gaps = 50/282 (17%)
Query: 605 QKNSTLPSRVLSWIQSVEPR--TTPLPVVIMQEC----------LTVY----------IK 642
Q+ + LP ++ S++Q V + +T + +++EC +Y I+
Sbjct: 430 QRYTVLPQQIPSFLQKVAGKILSTGKYLNVVRECGHDVTCPVAKEIIYTLKERAYVEQIE 489
Query: 643 KQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDK-------- 694
K ++ K++L LM + L+ L ++ +L+ GD HF+ + +L K
Sbjct: 490 KAFNYASKVLLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMDLTEEELRKPVEDIILT 549
Query: 695 --GENWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLASTP 752
+ ++T + ++ D K+ P L + + ++ +M +
Sbjct: 550 RLEALLELALRMSTANTDPFKD--DLKIELMPHDLITQLLRVLAIETKQEKAMTH----- 602
Query: 753 RKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARR 812
+ P + GL+ F Y V WPL LI N +A+ +Y + + K + L
Sbjct: 603 --ADPTELTLSGLEAFSFDYMVKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCS--- 657
Query: 813 WMWKGRSLATNSHSHKRHWL-----VEQKLLHFVDAFHQYVM 849
+W A H W + Q++L+FV Y+M
Sbjct: 658 -VWISNKTAKQHALHSAKWFAGAFTLRQRMLNFVQNIQYYMM 698
Score = 37.0 bits (84), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 73/205 (35%), Gaps = 59/205 (28%)
Query: 216 GEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAE------ 269
G+ + ++ L++ + PY E L+ W++ G++ DPY E F + +K +
Sbjct: 368 GDSQAQELCLYLTKAASAPYFEILEKWIYRGIIHDPYSE-FMVEEHELRKEKIQEDYNDK 426
Query: 270 FWEKSYVLRQLQCWKLDAESSSLTSESSHVRETNEKRQNGLRESISLSSSVKGLQACPLF 329
+W++ Y + Q P F
Sbjct: 427 YWDQRYTVLP--------------------------------------------QQIPSF 442
Query: 330 IKDIAKSIISAGKSLQLIRH----VSSKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTL 385
++ +A I+S GK L ++R V+ + I L Y + + + A L
Sbjct: 443 LQKVAGKILSTGKYLNVVRECGHDVTCPVAKEIIYTLKERAYVEQ---IEKAFNYASKVL 499
Query: 386 SEIFCISLAGLIGHGDHIFRYFWQD 410
+ F + L+ H I RYF D
Sbjct: 500 LD-FLMEEKELVAHLRSIKRYFLMD 523
>sp|Q5R5J6|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2
SV=1
Length = 902
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 88/222 (39%), Gaps = 24/222 (10%)
Query: 641 IKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKG-ENWD 699
I+K ++ K++L LM + L+ L ++ +L+ GD HF+ + +L K E+
Sbjct: 488 IEKAFNYASKVLLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMDLAEEELRKPVEDIT 547
Query: 700 DDFELNTLLQESIRNSA-------DGKLLSAPDALEVLITESHGSNSDEQPSMANLASTP 752
L ++A D K+ P L + + ++ +MA+
Sbjct: 548 PPRLEALLELALRMSTANTDPFKDDLKIDLMPHDLITQLLRVLAIETKQEKAMAH----- 602
Query: 753 RKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARR 812
+ P + GL+ F Y V WPL LI N +A+ +Y + + K + L
Sbjct: 603 --ADPTELTLSGLEAFSFDYIVKWPLSLIINRKALTRYQMLFRHMFYCKHVERQLCS--- 657
Query: 813 WMWKGRSLATNSHSHKRHWL-----VEQKLLHFVDAFHQYVM 849
+W A W + Q++L+FV Y+M
Sbjct: 658 -VWISNKTAKQHSLPSAQWFAGAFTLRQRMLNFVQNIQYYMM 698
Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 40/205 (19%), Positives = 74/205 (36%), Gaps = 59/205 (28%)
Query: 216 GEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAE------ 269
G+ + ++ L++ + PY E L+ W++ G++ DPY E F + ++ +
Sbjct: 368 GDSQAQELCLYLTKAASAPYFEVLEKWIYRGIIHDPYSE-FMVEEHELRKERIQEDYNDK 426
Query: 270 FWEKSYVLRQLQCWKLDAESSSLTSESSHVRETNEKRQNGLRESISLSSSVKGLQACPLF 329
+W++ Y + Q Q P F
Sbjct: 427 YWDQRYTIVQ--------------------------------------------QQIPSF 442
Query: 330 IKDIAKSIISAGKSLQLIRH----VSSKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTL 385
++ +A I+S GK L ++R V+ + I L Y + + + A L
Sbjct: 443 LQKMADKILSTGKYLNVVRECGHDVTCPVAKEIIYTLKERAY---VEQIEKAFNYASKVL 499
Query: 386 SEIFCISLAGLIGHGDHIFRYFWQD 410
+ F + L+ H I RYF D
Sbjct: 500 LD-FLMEEKELVAHLRSIKRYFLMD 523
>sp|Q9XYP7|GCP2_DROME Gamma-tubulin complex component 2 homolog OS=Drosophila
melanogaster GN=Grip84 PE=1 SV=2
Length = 852
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 85/207 (41%), Gaps = 16/207 (7%)
Query: 649 GKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLL 708
+++L L+ + LM L ++ LL GD F+ ++L K + L LL
Sbjct: 485 ARMLLDVLLTENDLMGHLQSVKRYLLLNQGDFTMQFMDACEDELTKNVDHVLPMTLENLL 544
Query: 709 QESIR-NSADGKLLSAPDALEVLITESHGSNSDEQPSMANLASTPRKSHPHSFGIDGLDL 767
++R +SA E+L + S N + PR + GL+
Sbjct: 545 GLTLRISSARNDPYKDDLHCELLPYDLVTQMSKIMKKEENWQAQPR------LDLSGLEC 598
Query: 768 LKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWKGRSLATN---- 823
FTY+V WP L+ N +I KY + L K + L K +WK S+A
Sbjct: 599 FAFTYEVKWPCSLVLNHISISKYQMLFRQLFYCKHVERQLCK----IWKENSIARQFEPQ 654
Query: 824 -SHSHKRHWLVEQKLLHFVDAFHQYVM 849
+ ++ + + Q++++ + Y+M
Sbjct: 655 AASLYRAAFTLRQRMMNAIQNLEYYMM 681
Score = 38.5 bits (88), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 199 ILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFY 258
+L YL++++ + G + Q+++ + + PY+ L W+ +G++ D + E
Sbjct: 343 VLTYLHERIKRL----EGNKDAQQLIIGLVRKAAKPYMRMLQMWIQKGVIVDRHREFLVV 398
Query: 259 ANRAISVDKA------EFWEKSYVLRQLQ 281
N I D+ ++WE+ Y LR Q
Sbjct: 399 DNEVIHRDELPEHYSDDYWERRYTLRDEQ 427
>sp|Q9USQ2|ALP6_SCHPO Spindle pole body component alp6 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=alp6 PE=1 SV=2
Length = 832
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 92/223 (41%), Gaps = 35/223 (15%)
Query: 638 TVYIKKQVDHIGKLILSNLMND-WRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGE 696
TV K + I L+ LM + + L D L ++ LLG GD + + + N LD+
Sbjct: 480 TVVDKAYTESINHLVY--LMEEVFHLTDHLKAIKKYLLLGQGDFVDLLMESLGNSLDQPA 537
Query: 697 NWDDDFELNTLLQESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLASTPRKSH 756
N TL + ++ S + + S SN+ +P L +
Sbjct: 538 N--------TLFRHNLTASLESAIRS--------------SNASYEPEYV-LKRLDARLL 574
Query: 757 PHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKA-RRWMW 815
S G G D+ YKV P+ +I ++Y ++ FL ++KR +FAL + RR
Sbjct: 575 ELSHGETGWDVFTLEYKVDSPINVIITPYCSRQYLKIFNFLWRLKRIEFALAHSWRRVNL 634
Query: 816 KGRSLATNSHSHKRHW------LVEQKLLHFVDAFHQYVMDRV 852
R++ N K W L E ++HFV Y++ V
Sbjct: 635 GERNVFRNLDYTKFEWHFVSCHLAE--MIHFVCQLQYYILFEV 675
>sp|Q96CW5|GCP3_HUMAN Gamma-tubulin complex component 3 OS=Homo sapiens GN=TUBGCP3 PE=1
SV=2
Length = 907
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 80/204 (39%), Gaps = 29/204 (14%)
Query: 650 KLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQ 709
K +L L + L+D + +R LLG GD ++H + ++ +L + L +L+
Sbjct: 543 KYLLDVLNKKYSLLDHMQAMRRYLLLGQGDFIRHLMDLLKPELVRPATTLYQHNLTGILE 602
Query: 710 ESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLASTPRKSHPHSFGIDGLDLLK 769
++R A +P+ L L + L +P G G D+
Sbjct: 603 TAVR--ATNAQFDSPEILRRL-------------DVRLLEVSP--------GDTGWDVFS 639
Query: 770 FTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWKGRSLATNSHS--- 826
Y V P+ + E + Y +V FL + KR ++ L R+ L N
Sbjct: 640 LDYHVDGPIATVFTRECMSHYLRVFNFLWRAKRMEYILTDIRKGHMCNAKLLRNMPEFSG 699
Query: 827 --HKRHWLVEQKLLHFVDAFHQYV 848
H+ H L + ++HF+ Y+
Sbjct: 700 VLHQCHILASE-MVHFIHQMQYYI 722
Score = 35.4 bits (80), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 223 MLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAEFWEKSYVLRQ 279
++ HI P + L W+++G L+D Y E F ++ + D+ W Y LR+
Sbjct: 414 LVQHILSLVSHPVLSFLYRWIYDGELEDTYHEFFVASDPTVKTDR--LWHDKYTLRK 468
>sp|P58854|GCP3_MOUSE Gamma-tubulin complex component 3 OS=Mus musculus GN=Tubgcp3 PE=2
SV=2
Length = 905
Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 81/204 (39%), Gaps = 29/204 (14%)
Query: 650 KLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQ 709
K +L L + L++ + +R LLG GD ++H + ++ +L + L +L+
Sbjct: 541 KYLLDVLNKKYSLLEHMQAMRRYLLLGQGDFIRHLMDLLKPELVRPATTLYQHNLTGILE 600
Query: 710 ESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLASTPRKSHPHSFGIDGLDLLK 769
++R A +P+ L+ L + L +P G G D+
Sbjct: 601 TAVR--ATNAQFDSPEILKRL-------------DVRLLEVSP--------GDTGWDVFS 637
Query: 770 FTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWKGRSLATNSHS--- 826
Y V P+ + E + Y +V FL + KR ++ L R+ L N
Sbjct: 638 LDYHVDGPIATVFTRECMSHYLRVFNFLWRAKRMEYILTDIRKGHMCNAKLLRNMPEFSG 697
Query: 827 --HKRHWLVEQKLLHFVDAFHQYV 848
H+ H L + ++HF+ Y+
Sbjct: 698 VLHQCHILASE-MVHFIHQMQYYI 720
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 223 MLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAEFWEKSYVLRQ 279
++ HI P + L W+++G L+D Y E F ++ + D+ W Y LR+
Sbjct: 412 LVQHILSLVSHPVLSFLYRWIYDGELEDTYHEFFVASDPTVKTDR--LWHDKYTLRK 466
>sp|Q95ZG3|SPC97_DICDI Spindle pole body component 97 OS=Dictyostelium discoideum GN=spc97
PE=2 SV=2
Length = 1335
Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%)
Query: 641 IKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDD 700
I+K D+ ++L+ L+N+ L+ L ++ +LL GD HF+ +++L K + +
Sbjct: 754 IEKAYDYASGILLNLLINERHLISRLKAIKHYFLLCKGDFFSHFMDTTYDELKKPLDQIN 813
Query: 701 DFELNTLLQESIRNSADGKLLSAPDALE 728
++N+LLQ S+R S+ + D LE
Sbjct: 814 MVKMNSLLQLSLRTSSISEEDEFKDDLE 841
Score = 40.0 bits (92), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 224 LLHIFV-GSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAE------FWEKSYV 276
L H + + LP++E LD W+ +G++ D Y E N + D +WE+ Y
Sbjct: 592 LFHYLIKATTLPFLEMLDLWIHQGIIRDTYFEFMIEENTDLKRDNINRDFNDLYWEQRYQ 651
Query: 277 LRQLQCWK 284
+RQ Q K
Sbjct: 652 IRQDQIPK 659
Score = 37.7 bits (86), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 764 GLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFAL------DKARRWMWKG 817
G++ L F Y V WPL LI + +++ KY + L K + L + RR +
Sbjct: 916 GIESLAFNYNVGWPLSLIISRKSLIKYQIIFRHLFLCKHVEKVLVDTWSQHQFRRSSYNK 975
Query: 818 RSLAT-NSHSHKRHWLVEQKLLHFVDAFHQYVMDRV 852
L+T S +H L+ +++HF+ Y+M V
Sbjct: 976 PGLSTLLSFTH----LLRHRMIHFLQNLEYYMMLEV 1007
>sp|Q9M350|GCP4_ARATH Gamma-tubulin complex component 4 homolog OS=Arabidopsis thaliana
GN=At3g53760 PE=2 SV=2
Length = 745
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 762 IDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKA 810
+DG D + Y V WP++L E + KY +V +L+++KR + L+K+
Sbjct: 503 VDGWDAIALEYSVDWPMQLFFTQEVLSKYLKVFQYLIRLKRTQMELEKS 551
>sp|O73787|GCP3_XENLA Gamma-tubulin complex component 3 homolog OS=Xenopus laevis
GN=tubgcp3 PE=1 SV=1
Length = 906
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 27/168 (16%)
Query: 650 KLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQ 709
K +L L ++ L++ + +R LLG GD ++H + ++ +L + L +L+
Sbjct: 542 KYLLDVLNKNYNLLEHMQAMRRYLLLGQGDFIRHLMDLLKPELVRPATTLYQHNLTGILE 601
Query: 710 ESIRNSADGKLLSAPDALEVLITESHGSNSDEQPSMANLASTPRKSHPHSFGIDGLDLLK 769
++R A P+ L+ L + L +P G G D+
Sbjct: 602 TAVR--ATNAQFDNPEILKRL-------------DVRLLEVSP--------GDTGWDVFS 638
Query: 770 FTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWKG 817
Y V P+ + E + Y +V FL + KR ++ L +WKG
Sbjct: 639 LDYHVDGPIATVFTRECMSHYLRVFNFLWRAKRMEYILTD----IWKG 682
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 223 MLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISVDKAEFWEKSYVLRQ 279
++ HI P + L W+++G L+D Y E F ++ + D+ W Y LR+
Sbjct: 413 LVQHILGLVAYPILNFLYRWIYDGELEDTYHEFFVASDPVVKTDR--LWHDKYSLRK 467
>sp|Q9SC88|GCP4_MEDTR Gamma-tubulin complex component 4 homolog OS=Medicago truncatula
GN=85P PE=2 SV=1
Length = 739
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 77/189 (40%), Gaps = 36/189 (19%)
Query: 645 VDHIGKLILSNLMNDWRLM-------DELAVLRAIYLLGSGDLLQHFL---TVIFNKLDK 694
VD I + S+L W+L+ L L+ +LL GD Q FL + +
Sbjct: 363 VDSIQAIAASHL---WQLVVVRADLNGHLKALKDYFLLAKGDFFQCFLEESRQLMRLPPR 419
Query: 695 GENWDDDF-------ELNTLLQE-------SIRNSADGKLLSAPDALEVLITESHGSNSD 740
+ D L T+ +E S+R + G + P L V S ++
Sbjct: 420 QSTAEADLMVPFQLASLKTIGEEDKYFSKVSLRMPSYG-ITVKPSLLNVPKATSAAADGI 478
Query: 741 EQPSMANLASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKV 800
S++N +S +DG D + Y + WPL L E + +Y +V +LL++
Sbjct: 479 SGASISNASS--------EMSVDGWDGIALEYSIEWPLHLFFTQEVLSRYLKVFQYLLRL 530
Query: 801 KRAKFALDK 809
KR + L+K
Sbjct: 531 KRTQMELEK 539
>sp|Q9Y705|ALP4_SCHPO Spindle pole body component alp4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=alp4 PE=1 SV=1
Length = 784
Score = 43.1 bits (100), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 215 GGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAIS---VDK---A 268
G+ ++L ++ + PY + L+ W+ G+++DPY+E ++ I+ +D+
Sbjct: 270 AGDPVARKILTYLLREASRPYTKMLNEWIHLGLVNDPYDEFMIKIHKGITSMQLDEDYTD 329
Query: 269 EFWEKSYVLRQLQ 281
E+WEK YV+R+ Q
Sbjct: 330 EYWEKRYVIREDQ 342
Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 762 IDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDK-----ARRWMWK 816
I+G + ++ YKV +PL LI + +AI +Y + + L ++ + L+ ++ W+
Sbjct: 560 INGFETMQLCYKVPFPLSLILSRKAIIRYQLLFRYFLLLRHVEMQLENSWVQHSKNSAWR 619
Query: 817 GRSLATNSHSHKRH-WLVEQKLLHFVDAFHQYVMDRV 852
S KR+ WL+ ++L FV Y V
Sbjct: 620 LNSSNAKIEQWKRNSWLLRTRMLSFVQKIIYYTTSEV 656
>sp|B1Y6Q4|COXX_LEPCP Protoheme IX farnesyltransferase OS=Leptothrix cholodnii (strain
ATCC 51168 / LMG 8142 / SP-6) GN=ctaB PE=3 SV=1
Length = 305
Score = 40.4 bits (93), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 22/134 (16%)
Query: 125 VSAWLKM--FRGIALKEEM---KITESNV------GNTPTLLGLASSLSSLCSGGEYLLQ 173
++AWL + F G A+ + +T N+ G P LLG A+ + G L
Sbjct: 123 LTAWLTLGTFVGYAVIYTVVLKPLTPQNIVIGGISGAMPPLLGWAAMTGEVGPEGLILCL 182
Query: 174 IVDGAIPQVCFQFNMPVPAAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFV---G 230
I+ F + P A DY L + + G E Q+LL+ FV G
Sbjct: 183 II--------FLWTPPHFWALALYRAEDYARAGLPMLPVTHGNEFTRLQILLYTFVLLAG 234
Query: 231 SLLPYIEGLDSWLF 244
+LLP+++G+ WL+
Sbjct: 235 TLLPFVQGMSGWLY 248
>sp|Q9VKU7|GCP4_DROME Gamma-tubulin complex component 4 homolog OS=Drosophila
melanogaster GN=Grip75 PE=1 SV=2
Length = 650
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/193 (18%), Positives = 81/193 (41%), Gaps = 24/193 (12%)
Query: 657 MNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESIRNSA 716
+N+ L ++ +++ +LLG G+ F + + ++ T +E +N
Sbjct: 338 VNEVDLERQMGLIKDFFLLGRGEFYLEFCSQMVGTME------------TYREERFKN-- 383
Query: 717 DGKLLSAPDALEVLITESHGSNSDEQPSMANLASTPRKSHPHSFGIDGLDLLKFTYKVSW 776
+ E+ T + ++ ++ S+ ST F L L Y+ W
Sbjct: 384 ------VTRSFELAATVTGITDDLDKFSLICQRSTSEPDDTSDFNF--LQGLSLKYEYEW 435
Query: 777 PLELIANMEAIKKYNQVMGFLLKVKRAKFALDKA-RRWMWKGRSLATNSHSHKRHWLVEQ 835
PL L+ + I++YN + FLL ++ ++ + + + W+ +S A + + + +
Sbjct: 436 PLNLLFSPTTIERYNNIFRFLLIIRTYQYEIQRVWAKQTWRAKS-AKDVPPNNKIITLRN 494
Query: 836 KLLHFVDAFHQYV 848
L+ F++ Y+
Sbjct: 495 YLMFFLNNMQYYI 507
>sp|Q9NHB0|BGBP1_DROME Gram-negative bacteria-binding protein 1 OS=Drosophila melanogaster
GN=GNBP1 PE=2 SV=2
Length = 494
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 797 LLKVKRAKFALDKARRWMWKGRSLATNSHSHKRHWLVEQKLLHFVDAFHQYVMD 850
+L++ R K ++ ++ G L+T++H + WL ++K+ HF D FH Y +D
Sbjct: 334 VLRMPRGKLVDGRS---LYGGPVLSTDAHQREDLWLSKRKISHFGDDFHTYSLD 384
>sp|A1TU04|COXX_ACIAC Protoheme IX farnesyltransferase OS=Acidovorax citrulli (strain
AAC00-1) GN=ctaB PE=3 SV=1
Length = 302
Score = 35.4 bits (80), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 149 GNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQFNMPVPAAQVAVHILDYLYKKLD 208
G P +LG AS + G E L+ + + F + P A + DY L
Sbjct: 160 GAMPPVLGWASMTGDV--GPEPLILFL------IIFLWTPPHFWALALYRVEDYRKSGLP 211
Query: 209 EVCLVQGGEVEEYQMLLHIFV---GSLLPYIEGLDSWLF 244
+ + G E Q+LL+ F+ G L+P++ G+ SW++
Sbjct: 212 MLPVTHGNEFTRLQVLLYTFILFAGCLMPFVYGMSSWIY 250
>sp|P38863|SPC97_YEAST Spindle pole body component SPC97 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SPC97 PE=1 SV=1
Length = 823
Score = 35.0 bits (79), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 59/267 (22%), Positives = 105/267 (39%), Gaps = 54/267 (20%)
Query: 637 LTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYL-LGSGDLLQHFLTVIFNKL--- 692
L +Y+ K ++ L + L++ L L+ I+L SG + FLT +L
Sbjct: 390 LELYVDKCYSRANEIFLKLFFQGYDLINVLKHLQQIFLGYQSGHNVLKFLTKNMGELTKH 449
Query: 693 ---DKGENWD---DDFEL-------NTLLQESIRNSADGKLLSAPDALEVL------ITE 733
D N+D +FEL N L+++ + D + L P L + E
Sbjct: 450 YRNDNNANYDKLLQNFELERQSENPNNLMRQLLMIQFDTETL--PQVLSHYLQIYPEVPE 507
Query: 734 SHGSNSDEQPSM---------ANLASTPRKSHPHSFGIDGLDL---------LKFTYKVS 775
++ +N D P M A L K ++ L+L LKF +
Sbjct: 508 NNSANDDSDPLMHANNFKNMNAILFDELSKERTGAYHGSNLELYTPKSAIYHLKFDINIP 567
Query: 776 WPLELIANMEAIKKYNQVMGFLLKVKRAKFALD-------KARRWMWKGRSLATNSHSHK 828
+PL +I + + KY ++ + L ++ LD K W ++G S +
Sbjct: 568 YPLNIIISRTCMIKYQIILRYQLVLQYHSRLLDETWMDLNKTPSWKYRGYSHTVKRRIVR 627
Query: 829 RHWLVEQKLLHFV----DAFHQYVMDR 851
++ K+ HF+ + F+Q V+D+
Sbjct: 628 ATRVLHAKMNHFIKTIMEYFNQNVIDK 654
>sp|O47423|NU4M_BRAFL NADH-ubiquinone oxidoreductase chain 4 OS=Branchiostoma floridae
GN=ND4 PE=3 SV=1
Length = 452
Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 19/140 (13%)
Query: 58 FYWDESVRSFCVKTGIYVTHLSLKSVHV---VLNQFIYAATCLKLVEISVTRVE----TT 110
F+W + +F VK +Y HL L HV + + A LKL + RV T
Sbjct: 191 FWWVGCILAFLVKLPLYGVHLWLPKAHVEAPIAGSMVLAGVLLKLGGYGMMRVSLMWGAT 250
Query: 111 GRISSPTLRAFSSAVSAW-LKMFRGIALKE-EMK--ITESNVGNTPTLLGLASSLSSLCS 166
+SS A++ W + + GI L++ ++K I S+VG+ ++G L+ +
Sbjct: 251 AMLSSEVFL----ALALWGIVVMGGICLRQTDLKSLIAYSSVGHMALVVG--GVLTGVAW 304
Query: 167 G--GEYLLQIVDGAIPQVCF 184
G G +L I G + F
Sbjct: 305 GYNGAMVLMIAHGLVSSCLF 324
>sp|O79421|NU4M_BRALA NADH-ubiquinone oxidoreductase chain 4 OS=Branchiostoma lanceolatum
GN=ND4 PE=3 SV=1
Length = 452
Score = 34.7 bits (78), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 19/140 (13%)
Query: 58 FYWDESVRSFCVKTGIYVTHLSLKSVHV---VLNQFIYAATCLKLVEISVTRVE----TT 110
F+W + +F VK +Y HL L HV + + A LKL + RV T
Sbjct: 191 FWWVGCILAFLVKLPLYGVHLWLPKAHVEAPIAGSMVLAGVLLKLGGYGMMRVSLMWGAT 250
Query: 111 GRISSPTLRAFSSAVSAW-LKMFRGIALKE-EMK--ITESNVGNTPTLLGLASSLSSLCS 166
+SS A++ W + + GI L++ ++K I S+VG+ ++G L+ +
Sbjct: 251 AMLSSEVFL----ALALWGIVVMGGICLRQTDLKSLIAYSSVGHMALVVG--GVLTGVAW 304
Query: 167 G--GEYLLQIVDGAIPQVCF 184
G G +L I G + F
Sbjct: 305 GYNGAMVLMIAHGLVSSCLF 324
>sp|Q9R207|NBN_MOUSE Nibrin OS=Mus musculus GN=Nbn PE=1 SV=1
Length = 751
Score = 33.5 bits (75), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 393 LAGLIGHGDHIFRYFWQDDSCESEFIPSLPSYMNDQMTRNGNTETLAVLTHSEKTWFKFL 452
L+ + G R +DD E F + + + D G T T +++HS+K W +
Sbjct: 238 LSSAVAFGGGEARLMAEDDEEEQSFFSAPGTCVVDV----GITNTQLIISHSQKKWIHLI 293
Query: 453 LDTLLQKGV 461
+DTL + G+
Sbjct: 294 MDTLQRNGL 302
>sp|O79881|NU4M_PIG NADH-ubiquinone oxidoreductase chain 4 OS=Sus scrofa GN=MT-ND4 PE=3
SV=2
Length = 459
Score = 33.1 bits (74), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 55 SSLFYWDESVRSFCVKTGIYVTHLSLKSVHV---VLNQFIYAATCLKLVEISVTRVET 109
S++F W + +F VK +Y HL L HV + + AA LKL + R+ T
Sbjct: 191 SNIFMWLACIMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRITT 248
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 307,221,277
Number of Sequences: 539616
Number of extensions: 12838842
Number of successful extensions: 30218
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 30141
Number of HSP's gapped (non-prelim): 105
length of query: 852
length of database: 191,569,459
effective HSP length: 126
effective length of query: 726
effective length of database: 123,577,843
effective search space: 89717514018
effective search space used: 89717514018
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)