Query 003058
Match_columns 852
No_of_seqs 251 out of 817
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 16:12:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2001 Gamma-tubulin complex, 100.0 6.1E-70 1.3E-74 607.2 43.9 487 21-852 75-593 (734)
2 PF04130 Spc97_Spc98: Spc97 / 100.0 7.1E-58 1.5E-62 537.7 42.2 495 45-852 1-505 (542)
3 KOG2000 Gamma-tubulin complex, 100.0 9.1E-50 2E-54 469.9 30.9 467 36-852 201-693 (879)
4 KOG2065 Gamma-tubulin ring com 100.0 1.7E-43 3.6E-48 378.9 38.9 524 42-852 1-549 (679)
5 KOG4344 Uncharacterized conser 100.0 3.3E-33 7.2E-38 307.5 26.8 627 29-852 282-983 (1121)
6 PF14609 GCP5-Mod21: gamma-Tub 67.5 42 0.0009 38.8 10.6 69 34-106 177-245 (653)
7 KOG4344 Uncharacterized conser 31.5 8.1 0.00017 45.6 -2.3 210 34-262 358-582 (1121)
8 PF14966 DNA_repr_REX1B: DNA r 28.6 4.6E+02 0.0099 23.9 10.4 76 84-163 2-81 (97)
9 PF10824 DUF2580: Protein of u 23.6 4.9E+02 0.011 22.6 8.7 64 79-142 8-72 (100)
10 PF10749 DUF2534: Protein of u 15.3 72 0.0016 28.0 0.8 31 771-801 41-75 (85)
No 1
>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton]
Probab=100.00 E-value=6.1e-70 Score=607.23 Aligned_cols=487 Identities=21% Similarity=0.343 Sum_probs=391.5
Q ss_pred ecccCccccCCC-CcccCCHHHHHHHHHHhhcCCCCCeEEEeCC-----------CccEEEecCceeecCCHHHHHHHHH
Q 003058 21 VFSVGIHFATPV-SSSRTNEVDLVRGVLQMLQGLSSSLFYWDES-----------VRSFCVKTGIYVTHLSLKSVHVVLN 88 (852)
Q Consensus 21 ~~~~~~~~~~~~-~~~~i~E~~LvrdlL~~L~Gi~g~~f~~~~~-----------~~~f~i~~~i~vs~ls~~sl~~Ll~ 88 (852)
+.+++.+...|. .+...||..+++|+|++|.|++|.|+.++.. ...|.|.|++. -+++.+++
T Consensus 75 ~~~~~~~~~~is~~~lp~QE~~li~dLl~af~Gv~~ryV~~Q~~~~s~~~~~~~~~~~F~v~~~fd------~~ir~la~ 148 (734)
T KOG2001|consen 75 VGIDYFTDYEISDMPLPSQESKLIDDLLYAFVGVEGRYVSPQYMIISEAYEKWIDSIFFMVLPRFD------LAIRELAE 148 (734)
T ss_pred cccccccccCcccCCchhHHHHHHHHHHHHHcCCCcceeecchhhhhhhhhhhccCcceeeccchh------HHHHHHHH
Confidence 444555544443 3555799999999999999999999987431 23455666554 79999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhhhhH
Q 003058 89 QFIYAATCLKLVEISVTRVETTGRISSPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTLLGLASSLSSLCSGG 168 (852)
Q Consensus 89 ~~l~lG~~~~~Lr~Fve~~~~~~~~~g~v~qAf~~aL~~~L~~Y~~~l~~LE~~l~~~~~~~~~TLl~L~~~L~~~~~~l 168 (852)
+++++|.+|..+++|++.... ...|.|++|+|+|+++.|.+|+.+|+++|+++.. ...||..|...++|+...+
T Consensus 149 eilpl~~yy~~v~~fie~~s~--f~~G~vn~alaaAlr~ll~dyy~li~qlE~e~R~----~~lslq~L~~y~qP~m~~m 222 (734)
T KOG2001|consen 149 EILPLASYYLLVQDFIEETSF--FEYGQVNHALAAALRELLYDYYELISQLEQELRT----NRLSLQDLWFYMQPMMRSM 222 (734)
T ss_pred HHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccccHHHHHHHHhhhHHHH
Confidence 999999999999999998643 4789999999999999999999999999999883 4689999999999987766
Q ss_pred HHHHHHHhccCCcccccCCCCCCcccchHHHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhHHHHHHHHHHHHhcccc
Q 003058 169 EYLLQIVDGAIPQVCFQFNMPVPAAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGML 248 (852)
Q Consensus 169 ~~L~~l~~~~i~~~~~~~~~~~~~~~~G~~LLs~Ly~~~~~~~~~~~Gd~~~~~ll~~Ll~~~~~PYl~~L~~WI~~G~L 248 (852)
+.++..+... ..+.++||++|+.|++.+..+ .||+.++.++.++++.+++||++|+++||+.|.+
T Consensus 223 ~~l~~~~~~~-----------~~~~~~gg~vls~l~~~~~~~----~Gd~~a~~ll~~l~r~as~~Y~~mLe~Wi~~Gii 287 (734)
T KOG2001|consen 223 RRLAVAATTT-----------VKKVCKGGAVLSLLQSSIKEN----LGDRSARMLLKKLLRNASQPYCTMLEEWIYQGII 287 (734)
T ss_pred HHHHHHHhhh-----------hccccCchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcchHHHHHHHHHhcccc
Confidence 6555544321 123479999999999998763 6999999999999999999999999999999999
Q ss_pred cCCCCcceEEecCCCC------CCchhhcccceEEEeccccccccccccccccCccccchhhhhhcCccccccccccCCC
Q 003058 249 DDPYEEMFFYANRAIS------VDKAEFWEKSYVLRQLQCWKLDAESSSLTSESSHVRETNEKRQNGLRESISLSSSVKG 322 (852)
Q Consensus 249 ~Dp~~EFFI~~~~~v~------~~~~~~W~~~y~lr~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~~~~~~~ 322 (852)
+|||+||||..+ .+. ...++||..+|+||.+
T Consensus 288 ~Dpy~EFmi~d~-~~~k~~l~ed~~d~YW~~RY~ir~d------------------------------------------ 324 (734)
T KOG2001|consen 288 NDPYQEFMIYDN-LITKEDLPEDYTDKYWDQRYTIRKD------------------------------------------ 324 (734)
T ss_pred cCchHhHhhhhc-chhhhcCchhhhHHHHHHhheechh------------------------------------------
Confidence 999999999988 333 2367899999999984
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHhhcCCCCcchhhhccCCCCCCCCccccccccccccchhHHHHHHhhhccCCCcc
Q 003058 323 LQACPLFIKDIAKSIISAGKSLQLIRHVSSKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTLSEIFCISLAGLIGHGDH 402 (852)
Q Consensus 323 ~~~vP~FL~~~a~kIl~~GKsl~lLr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 402 (852)
.+|.|+.+.++|||.||||+|++|+||+... ++.
T Consensus 325 --qiP~fL~~~adkIL~tGKYLNVvReC~~~v~-----~p~--------------------------------------- 358 (734)
T KOG2001|consen 325 --QIPGFLLSEADKILRTGKYLNVVRECGKIVT-----IPQ--------------------------------------- 358 (734)
T ss_pred --hcchHHHHHHHHHHHhhhHHHHHHHhCccCC-----CCc---------------------------------------
Confidence 3999999999999999999999999996643 100
Q ss_pred cccccccCCCCCCcccCCCcccccchhccCCCcccccccccchhhHHHHHHhhhhhhcccccccCCcccCCCCccccccc
Q 003058 403 IFRYFWQDDSCESEFIPSLPSYMNDQMTRNGNTETLAVLTHSEKTWFKFLLDTLLQKGVIDQKSGNKVASNVPNMKEENM 482 (852)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 482 (852)
.+ | +-+|+
T Consensus 359 ---------------~~--------------n----------~~~~~--------------------------------- 366 (734)
T KOG2001|consen 359 ---------------SS--------------N----------EINDP--------------------------------- 366 (734)
T ss_pred ---------------ch--------------h----------hhccc---------------------------------
Confidence 00 0 00000
Q ss_pred chhhhcccccccccCCCCCcccccccccccccccchhhhhhhccccCCCCCChHHHHHHHhccccCCcccccCCCccccc
Q 003058 483 GKIIENNLFTQKTFCPENPVISVCDVSLNINKSSNIWNALNLSRNYYLPPLNDEVLRKAVLGAESGNISELKGTNYAFGF 562 (852)
Q Consensus 483 ~~~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (852)
.
T Consensus 367 -------------------~------------------------------------------------------------ 367 (734)
T KOG2001|consen 367 -------------------A------------------------------------------------------------ 367 (734)
T ss_pred -------------------c------------------------------------------------------------
Confidence 0
Q ss_pred cccccchhhcccccccccccCCCCccCCCcccccccccccccccCCCCccchhccccccCCCCCCCcHHHHhhhhhHHHH
Q 003058 563 QFGESEHLRSQCDTKLLEVLFPFPTILPSFRDELHISELLPFQKNSTLPSRVLSWIQSVEPRTTPLPVVIMQECLTVYIK 642 (852)
Q Consensus 563 ~~~~~~~~~~q~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~l~~~l~~~I~ 642 (852)
+ + +.+.....|+
T Consensus 368 -----------~------------------~---------------------------------------~e~~~~e~I~ 379 (734)
T KOG2001|consen 368 -----------D------------------L---------------------------------------MESNHEEYIK 379 (734)
T ss_pred -----------c------------------c---------------------------------------chhhHHHHHH
Confidence 0 0 0001224799
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhcccccccCC
Q 003058 643 KQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESIRNSADGKLLS 722 (852)
Q Consensus 643 ~~y~~a~~~Ll~~L~~~~~L~~hL~aLr~yfLL~~GDf~~~F~~~l~~~L~k~~~~~~~~~L~~lL~~Al~~ss~~~~~~ 722 (852)
++|..||..++++|+++++|..||++||+||||.||||+.+||+.+.++|.|++..+.+.+|+++|+.|++..++.. .
T Consensus 380 ~ay~~A~~~lL~ll~~e~dL~~hLrslK~YfLldQgdF~~~Fld~~~eEL~K~v~~i~p~kLqsLL~laLr~~s~a~--~ 457 (734)
T KOG2001|consen 380 KAYEFANEILLKLLFEEYDLVGHLRSLKHYFLLDQGDFFVTFLDKAEEELTKNVENISPEKLQSLLDLALREQSEAA--N 457 (734)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhcchhhcCHHHHHHHHHHHHHhhhccc--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999433322 4
Q ss_pred CC--CceEEEEEecC---------CCCCCCCccccccCCCCCCCCCCCCCccccceEEEEEeecCccceeeCHHHHHHHH
Q 003058 723 AP--DALEVLITESH---------GSNSDEQPSMANLASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYN 791 (852)
Q Consensus 723 d~--~~L~~~l~~~~---------~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~d~~~L~Y~V~WPLslIit~~~m~~Yq 791 (852)
|| +.|.|.+.+.. ++..++..+ +...+|+. -....|+++|+|+|+|+||||+||++++|.+||
T Consensus 458 Dp~k~~L~i~~~~~~L~~ql~~~l~ie~~e~~a--ns~~dP~~----~l~lsGlE~faf~Y~vkwPLSlIIsrkal~kYQ 531 (734)
T KOG2001|consen 458 DPMKEDLKICVDPTDLITQLSHILAIEPEEESA--NSQADPLE----HLDLSGLEAFAFDYEVKWPLSLIISRKALIKYQ 531 (734)
T ss_pred CchhhheeeeecHhhHHHHHHHHHhcCcccccc--ccccCcch----hccccchhhheeeeccCCceeeeEcHHHHHHHH
Confidence 55 78888775431 232222111 11112221 146789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhc--cCCccc-hhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003058 792 QVMGFLLKVKRAKFALDKARRWMWKG--RSLATN-SHSHKRHWLVEQKLLHFVDAFHQYVMDRV 852 (852)
Q Consensus 792 ~IFrfLl~lKr~e~~L~~~~~W~~~~--~~~~~~-~~~~~~~~~LR~~Ml~Fv~~L~~Yl~~eV 852 (852)
.|||+|+.|||+++.|+.+ |+.++ |.+... ..+.+.++.||+||++||++++||+|+||
T Consensus 532 mLfR~lf~lkhVerqL~~~--W~~~~~~r~~~~~~~q~~r~s~~LR~RMl~fiqsi~~Y~~~eV 593 (734)
T KOG2001|consen 532 MLFRYLFYLKHVERQLCET--WQSHSKARSSNTKGAQIVRASFLLRQRMLNFIQSIEYYMTQEV 593 (734)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999 98643 333322 35688899999999999999999999987
No 2
>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin. The SPB functions as the microtubule-organising centre in yeast, with the microtubule cytoskeleton playing an essential role in chromosome segregation, cellular organisation and vesicle trafficking in eukaryotic cells. In most cells, the centrosome is the primary microtubule-organising centre that nucleates and organises microtubules. Gamma-tubulin localises to centrosomes and is required for microtubule nucleation. In Saccharomyces cerevisiae, gamma-tubulin forms a stable complex with Spc97 and Spc98 [].; GO: 0000226 microtubule cytoskeleton organization, 0000922 spindle pole, 0005815 microtubule organizing center; PDB: 3RIP_A.
Probab=100.00 E-value=7.1e-58 Score=537.71 Aligned_cols=495 Identities=31% Similarity=0.531 Sum_probs=320.5
Q ss_pred HHHHhhcCCCCCeEEEeCCCccEEEecCceeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHH
Q 003058 45 GVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVTRVETTGRISSPTLRAFSSA 124 (852)
Q Consensus 45 dlL~~L~Gi~g~~f~~~~~~~~f~i~~~i~vs~ls~~sl~~Ll~~~l~lG~~~~~Lr~Fve~~~~~~~~~g~v~qAf~~a 124 (852)
|+||+|+|++|.+|.|++..++|.+.+++. +|++++++++++++++++|++|++|+.|++.........|++.+||+.+
T Consensus 1 dll~~L~G~~s~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~i~~~g~~~~~l~~~i~~~~~~~~~~~~~~~a~~~~ 79 (542)
T PF04130_consen 1 DLLYALQGVESTFFIWDKDSDRFELRPNIS-SHLSPPSLRSILNEILEIGTLYRRLRSFIERVSSSSSERGPTLQAFASA 79 (542)
T ss_dssp HHHHHHTT---SSSEEETT-TEEE--S-----TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTS----S-SHHHHHHHHH
T ss_pred CHHHHccCCCCceEEEeCCCCeEEECCCcc-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHH
Confidence 799999999999999999889999999877 8999999999999999999999999999997643211379999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhhhhHHHHHHHHhccCCcccccCCCCCCcccchHHHHHHHH
Q 003058 125 VSAWLKMFRGIALKEEMKITESNVGNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQFNMPVPAAQVAVHILDYLY 204 (852)
Q Consensus 125 L~~~L~~Y~~~l~~LE~~l~~~~~~~~~TLl~L~~~L~~~~~~l~~L~~l~~~~i~~~~~~~~~~~~~~~~G~~LLs~Ly 204 (852)
|+++|.+|+..|..+|.++... ..+||..+...++++...++.|..++...... ..+...+|+.+|+.||
T Consensus 80 l~~~L~~y~~~l~~le~~~~~~---~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~-------~~~~~~~g~~lL~~L~ 149 (542)
T PF04130_consen 80 LSSILQEYREFLSELEESILSN---GSLSLLQLLAQLRPWFRRLEALADLIQEIIQL-------SLSQNLRGGQLLSILY 149 (542)
T ss_dssp HHHHTHHHHHHHHHHHHHHHH----TT--HHHHHHHTHHHHHHHHHHHHHHHHH-----------HHHT--THHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------ccccCCcHHHHHHHHH
Confidence 9999999999999999998853 57899999999999999999999998753210 1123479999999999
Q ss_pred HHHHhhhhhcCCChHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCCCcceEEecCC-CCCCchhhcccceEEEecccc
Q 003058 205 KKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRA-ISVDKAEFWEKSYVLRQLQCW 283 (852)
Q Consensus 205 ~~~~~~~~~~~Gd~~~~~ll~~Ll~~~~~PYl~~L~~WI~~G~L~Dp~~EFFI~~~~~-v~~~~~~~W~~~y~lr~~~~~ 283 (852)
..+.. ..+|++..++++..||..+++||+++|..||.+|+|.||++||||+.+++ ....+++||.++|.++.
T Consensus 150 ~~~~~---~~~g~~~~~~~l~~ll~~~~~p~l~~l~~Wl~~G~l~D~~~EFfI~~~~~~~~~~~~~~w~~~f~l~~---- 222 (542)
T PF04130_consen 150 ERIYH---QQSGDPELRKILQRLLNRCLQPYLRMLDSWLYRGELDDPYDEFFIQRNKESNSESSEDFWDDRFVLRE---- 222 (542)
T ss_dssp HHH------HS--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTS-SSEEE----------------EEE-G----
T ss_pred HHHhh---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCccceeEeecccccCcccchhhccCEEECc----
Confidence 88721 14799999999999999999999999999999999999999999999943 45578899999999987
Q ss_pred ccccccccccccCccccchhhhhhcCccccccccccCCCCCCCCcch-HHHHHHHHHHhHHHHHHHhhcCCCCcchhhhc
Q 003058 284 KLDAESSSLTSESSHVRETNEKRQNGLRESISLSSSVKGLQACPLFI-KDIAKSIISAGKSLQLIRHVSSKSNDDRIECL 362 (852)
Q Consensus 284 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~~~~~~~~~~vP~FL-~~~a~kIl~~GKsl~lLr~~~~~~~~~~~~~~ 362 (852)
.++|.|+ .++|++|+.+||++++||.|+.... .+.
T Consensus 223 ----------------------------------------~~~P~fl~~~~a~~Il~~Gk~~~lL~~~~~~~~----~~~ 258 (542)
T PF04130_consen 223 ----------------------------------------SRVPSFLSKDLAEKILEIGKSLRLLRSCNPEHE----WCS 258 (542)
T ss_dssp ----------------------------------------GGS-TTS-HHHHHHHHHHHHHHHT------S---------
T ss_pred ----------------------------------------ccCChhcCHHHHHHHHHHHHHHHHHHHhccccc----cch
Confidence 2599999 8999999999999999999997753 000
Q ss_pred cCCCCCCCCccccccccccccchhHHHHHHhhhccCCCcccccccccCCCCCCcccCCCcccccchhccCCCcccccccc
Q 003058 363 GNFNYGSDWSTVHRGQSIAGLTLSEIFCISLAGLIGHGDHIFRYFWQDDSCESEFIPSLPSYMNDQMTRNGNTETLAVLT 442 (852)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~~~~~ 442 (852)
. . .. .
T Consensus 259 ~--------------------------------------~----------------~~-----------------~---- 263 (542)
T PF04130_consen 259 D--------------------------------------Q----------------EL-----------------S---- 263 (542)
T ss_dssp ---------------------------------------T----------------T------------------S----
T ss_pred h--------------------------------------c----------------cc-----------------h----
Confidence 0 0 00 0
Q ss_pred cchhhHHHHHHhhhhhhcccccccCCcccCCCCcccccccchhhhcccccccccCCCCCcccccccccccccccchhhhh
Q 003058 443 HSEKTWFKFLLDTLLQKGVIDQKSGNKVASNVPNMKEENMGKIIENNLFTQKTFCPENPVISVCDVSLNINKSSNIWNAL 522 (852)
Q Consensus 443 ~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 522 (852)
.+ . +... .. +.
T Consensus 264 -------------------~~--------------------~------------~~~~-~~------------~~----- 274 (542)
T PF04130_consen 264 -------------------SD--------------------L------------CLSD-KE------------SS----- 274 (542)
T ss_dssp -------------------HH--------------------H-----------------HH------------HH-----
T ss_pred -------------------hh--------------------h------------hhhh-hh------------hh-----
Confidence 00 0 0000 00 00
Q ss_pred hhccccCCCCCChHHHHHHHhccccCCcccccCCCccccccccccchhhcccccccccccCCCCccCCCccccccccccc
Q 003058 523 NLSRNYYLPPLNDEVLRKAVLGAESGNISELKGTNYAFGFQFGESEHLRSQCDTKLLEVLFPFPTILPSFRDELHISELL 602 (852)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 602 (852)
...... ++.
T Consensus 275 -----------------~~~~~~--------------------------------------~~~---------------- 283 (542)
T PF04130_consen 275 -----------------ESSSLQ--------------------------------------PFE---------------- 283 (542)
T ss_dssp -----------------HHHHHH--------------------------------------T-S----------------
T ss_pred -----------------hHHHhc--------------------------------------ccc----------------
Confidence 000000 000
Q ss_pred ccccCCCCccchhccccccCCCCCCCcHHHHhhhhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHhhhcCCcchHH
Q 003058 603 PFQKNSTLPSRVLSWIQSVEPRTTPLPVVIMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQ 682 (852)
Q Consensus 603 ~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~l~~~l~~~I~~~y~~a~~~Ll~~L~~~~~L~~hL~aLr~yfLL~~GDf~~ 682 (852)
......+...|+++|..+++.+++.++++++|.+||++||+||||++|||+.
T Consensus 284 ----------------------------~~~~~~l~~~i~~~~~~~~~~l~~~l~~~~~l~~~l~~l~~~~Ll~~gdf~~ 335 (542)
T PF04130_consen 284 ----------------------------PLDQDKLESKIESQYKLVNKSLLDLLFEDYNLLEHLKALRDFFLLGDGDFAD 335 (542)
T ss_dssp ----------------------------S--HHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHTT---HHHHH
T ss_pred ----------------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhcCcHHHH
Confidence 0112345568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCChHHHHHHHHHHHhcccccccCCCCCceE-EEEEecCCCCCCCCccccccCCCCCCCCCCCCC
Q 003058 683 HFLTVIFNKLDKGENWDDDFELNTLLQESIRNSADGKLLSAPDALE-VLITESHGSNSDEQPSMANLASTPRKSHPHSFG 761 (852)
Q Consensus 683 ~F~~~l~~~L~k~~~~~~~~~L~~lL~~Al~~ss~~~~~~d~~~L~-~~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 761 (852)
.|++.+++.+.++..+.....++..++.+++.......... .... ............... .....+ ......+
T Consensus 336 ~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~ 409 (542)
T PF04130_consen 336 SFLESLFEKLESPSSRSSDSNLNSILQEALRASSADWSDES-SNLRSGEISSSTSLSSNLSS----NDSSSR-NSNNSSS 409 (542)
T ss_dssp HHHHHHHHHHSS---TTHHHHHHHHHHHHHHHTT---TTSG-GGEEE---------------------------------
T ss_pred HHHHHHHHHhcCCccccchhhHHHHHHHHHHhCccccccch-hhhhhccccccccchhhhhh----hhhhcc-ccccccc
Confidence 99999999999999999999999999999987654311100 0000 000000000000000 000001 1123447
Q ss_pred ccccceEEEEEeecCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcc-----CC--ccchhhhHHHHHHH
Q 003058 762 IDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRWMWKGR-----SL--ATNSHSHKRHWLVE 834 (852)
Q Consensus 762 ~~g~d~~~L~Y~V~WPLslIit~~~m~~Yq~IFrfLl~lKr~e~~L~~~~~W~~~~~-----~~--~~~~~~~~~~~~LR 834 (852)
..+|+.+.|+|+++|||++|||+++|.+|++||+|||++|++++.|+++ |....+ ++ .......++++.+|
T Consensus 410 ~~~~~~l~L~y~~~~PL~lilt~~~~~~Y~~IF~~Ll~lk~~~~~L~~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~lr 487 (542)
T PF04130_consen 410 LEGWDALTLSYKVPWPLNLILTPSVMEKYNRIFRFLLQLKRAEWALQSV--WRQLRRLSRKFGKPDRQSRPQLRRLQILR 487 (542)
T ss_dssp --TTTTEEEEE---TTGGGTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHTSGGG--------S-SHHHHHHHHH
T ss_pred ccccceeEEEecCCccHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhccchhhhhhHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999 864221 11 11224588899999
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 003058 835 QKLLHFVDAFHQYVMDRV 852 (852)
Q Consensus 835 ~~Ml~Fv~~L~~Yl~~eV 852 (852)
++|.||+++|++|++++|
T Consensus 488 ~~m~~fv~~l~~y~~~~v 505 (542)
T PF04130_consen 488 HRMQHFVNSLQSYLQFDV 505 (542)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999876
No 3
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]
Probab=100.00 E-value=9.1e-50 Score=469.90 Aligned_cols=467 Identities=23% Similarity=0.328 Sum_probs=373.9
Q ss_pred cCCHHHHHHHHHHhhcCCCCCeEEEeCCCccEEEecCceeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCC
Q 003058 36 RTNEVDLVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVTRVETT-GRIS 114 (852)
Q Consensus 36 ~i~E~~LvrdlL~~L~Gi~g~~f~~~~~~~~f~i~~~i~vs~ls~~sl~~Ll~~~l~lG~~~~~Lr~Fve~~~~~-~~~~ 114 (852)
.++|..+|++++|+|+|++|.+|+++....+|.+...+. ++.+...++..+.++|++|.++..|+...... ....
T Consensus 201 ~i~e~~lvk~v~yvl~gv~~~~~~~~~~~~~~~~k~~~~----~~~~~~~l~~~lSelg~l~~~~~~~~~~~~l~~~~~~ 276 (879)
T KOG2000|consen 201 LIKEEDLVKDVLYVLQGVDGALFSFDSELECFVVKGPVH----LPRGISGLLYLLSELGVLYQRVSTFSDQLVLDNPYCI 276 (879)
T ss_pred cchHHHHHHHHHHHHhhhhhceeecccHHhhhhhhcccc----chhhHHHHHHHHHHHhHHHHhhhhhcchhhhhhhhhh
Confidence 589999999999999999999999988888888875532 56899999999999999999999999875321 1237
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-------CCCCHHHHHHHHHhhhhhHHHHHHHHhccCCcccccCC
Q 003058 115 SPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVG-------NTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQFN 187 (852)
Q Consensus 115 g~v~qAf~~aL~~~L~~Y~~~l~~LE~~l~~~~~~-------~~~TLl~L~~~L~~~~~~l~~L~~l~~~~i~~~~~~~~ 187 (852)
|++.|||++++++.|+.|+..+..+..++.....+ ..++|..++.++.....++.++.+++..+.
T Consensus 277 g~v~qaf~~~l~~elq~y~~~v~~~~s~~~~~~~~~~~~~~~~~~~l~r~la~~~~~~~rl~i~~~l~e~~~-------- 348 (879)
T KOG2000|consen 277 GLVGQAFTAELSDELQYYYALVRSLLTSLSRNKIGIVNLKLVSEVTLLRLLAWIYEPGIRLQILCKLVEHCQ-------- 348 (879)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccceecccccchhhhhhhhhHHHHHHHHhhcchhhhHHHHHHHHhc--------
Confidence 99999999999999999999999988877532111 125788888888877777888888875322
Q ss_pred CCCCcccchHHHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCCCcceEEecCCC-CCC
Q 003058 188 MPVPAAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAI-SVD 266 (852)
Q Consensus 188 ~~~~~~~~G~~LLs~Ly~~~~~~~~~~~Gd~~~~~ll~~Ll~~~~~PYl~~L~~WI~~G~L~Dp~~EFFI~~~~~v-~~~ 266 (852)
..+|+.++..++.+. .+||+.++.++.++|...|.||.+|+..||++|.|.|+|+||||..+... ++.
T Consensus 349 -----~~~g~~l~~~~~~f~------~~g~~~i~~i~~~lL~~~~~p~~~~i~~wi~~G~l~D~y~EFfV~~~~~~~~~~ 417 (879)
T KOG2000|consen 349 -----VPKGGKLLSAVHEFL------THGDLYVHPIVFSLLHSSCSPYYRMLRNWLLEGELRDTYGEFFVAENPDPGSVK 417 (879)
T ss_pred -----ccCCCcchHHHHHHH------HhCCCcccHHHHHHhhhcchHHHHHHHHHHHcCcccccccceEEeccCCCCccc
Confidence 257777888888765 47999999999999999999999999999999999999999999999862 356
Q ss_pred chhhcccceEEEeccccccccccccccccCccccchhhhhhcCccccccccccCCCCCCCCcchH-HHHHHHHHHhHHHH
Q 003058 267 KAEFWEKSYVLRQLQCWKLDAESSSLTSESSHVRETNEKRQNGLRESISLSSSVKGLQACPLFIK-DIAKSIISAGKSLQ 345 (852)
Q Consensus 267 ~~~~W~~~y~lr~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~~~~~~~~~~vP~FL~-~~a~kIl~~GKsl~ 345 (852)
.+.+|+++|.++. .++|.||. ++|.|||.|||++|
T Consensus 418 ~d~lw~~~~~l~~--------------------------------------------~~lP~Fi~~~~a~kI~l~GKsin 453 (879)
T KOG2000|consen 418 DDRLWHDGYKLRY--------------------------------------------EMLPSFIPMELAQKILLIGKSIN 453 (879)
T ss_pred cccccccccccch--------------------------------------------hhcccccCHHHHHHHHHhhhHHH
Confidence 7899999999885 47999995 79999999999999
Q ss_pred HHHhhcCCCCcchhhhccCCCCCCCCccccccccccccchhHHHHHHhhhccCCCcccccccccCCCCCCcccCCCcccc
Q 003058 346 LIRHVSSKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTLSEIFCISLAGLIGHGDHIFRYFWQDDSCESEFIPSLPSYM 425 (852)
Q Consensus 346 lLr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 425 (852)
+|+.||.+.. |.+. . ++
T Consensus 454 fL~~~c~e~~-----w~~e-------------------------------------~----------~~----------- 470 (879)
T KOG2000|consen 454 FLRDCCNEQT-----WSDE-------------------------------------I----------DA----------- 470 (879)
T ss_pred HHHHhccccc-----cccc-------------------------------------h----------hH-----------
Confidence 9999998643 2110 0 00
Q ss_pred cchhccCCCcccccccccchhhHHHHHHhhhhhhcccccccCCcccCCCCcccccccchhhhcccccccccCCCCCcccc
Q 003058 426 NDQMTRNGNTETLAVLTHSEKTWFKFLLDTLLQKGVIDQKSGNKVASNVPNMKEENMGKIIENNLFTQKTFCPENPVISV 505 (852)
Q Consensus 426 ~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~~~ 505 (852)
+ |...
T Consensus 471 --------------------~-~~~~------------------------------------------------------ 475 (879)
T KOG2000|consen 471 --------------------K-ASVE------------------------------------------------------ 475 (879)
T ss_pred --------------------H-HHHh------------------------------------------------------
Confidence 0 0000
Q ss_pred cccccccccccchhhhhhhccccCCCCCChHHHHHHHhccccCCcccccCCCccccccccccchhhcccccccccccCCC
Q 003058 506 CDVSLNINKSSNIWNALNLSRNYYLPPLNDEVLRKAVLGAESGNISELKGTNYAFGFQFGESEHLRSQCDTKLLEVLFPF 585 (852)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~p~ 585 (852)
+ ..+++++.+.
T Consensus 476 ----------------------~--------s~~~~l~~~~--------------------------------------- 486 (879)
T KOG2000|consen 476 ----------------------E--------SSTRDLEYAS--------------------------------------- 486 (879)
T ss_pred ----------------------h--------hhhhhhccCC---------------------------------------
Confidence 0 0000010000
Q ss_pred CccCCCcccccccccccccccCCCCccchhccccccCCCCCCCcHHHHhhhhhHHHHHHHHHHHHHHHHHhhccccHHHH
Q 003058 586 PTILPSFRDELHISELLPFQKNSTLPSRVLSWIQSVEPRTTPLPVVIMQECLTVYIKKQVDHIGKLILSNLMNDWRLMDE 665 (852)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~l~~~l~~~I~~~y~~a~~~Ll~~L~~~~~L~~h 665 (852)
+ ..+-..++++|.+..++|+++|.+.+++.+|
T Consensus 487 -------------------------------------------~-----~~l~~~v~~ay~e~inhl~~ll~~~~~l~dh 518 (879)
T KOG2000|consen 487 -------------------------------------------D-----VGLLGSVSEAYSEIVNHLNDILEEVISLLDH 518 (879)
T ss_pred -------------------------------------------C-----hhHHHHHhhhhccchHHHHHHHHHHhhHHHH
Confidence 0 0122367889999999999999999999999
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhcc-cccccCCCC---CceEEEEEecCCCCCCC
Q 003058 666 LAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESIRNS-ADGKLLSAP---DALEVLITESHGSNSDE 741 (852)
Q Consensus 666 L~aLr~yfLL~~GDf~~~F~~~l~~~L~k~~~~~~~~~L~~lL~~Al~~s-s~~~~~~d~---~~L~~~l~~~~~~~~~~ 741 (852)
+.++|+|.|||+|||+..+|+.+.+.|++|+....+++|+.+++.|+|.+ ++.+ .|+ .|+.+++.+
T Consensus 519 ~~a~k~ylllGqgDfid~lme~~~n~l~~p~~tl~~~~lt~~ldsaiR~s~na~y--d~~~vL~Rld~~~~~-------- 588 (879)
T KOG2000|consen 519 NQALKRYLLLGQSDFIDVLMEEKKNILARPRDTLPEHKLTGVLDSAVRSSLNAQY--DDRDVLNRLDVRVLK-------- 588 (879)
T ss_pred HHHHHHHHHhccchHHHHHHHhhcchhcCcchhhhHhHHHHHHHHHHhhhhcccc--CChhhhhhhhhHhhh--------
Confidence 99999999999999999999999999999999999999999999999998 6552 332 233332221
Q ss_pred CccccccCCCCCCCCCCCCCccccceEEEEEeecCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHhc---
Q 003058 742 QPSMANLASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALD-KARRWMWKG--- 817 (852)
Q Consensus 742 ~~~~~~~~~~~r~~~~~~~~~~g~d~~~L~Y~V~WPLslIit~~~m~~Yq~IFrfLl~lKr~e~~L~-~~~~W~~~~--- 817 (852)
..+++.|||.|+|+|.|.-|+++|+|++++.+|-+||+|||++||+++.|+ .+ |....
T Consensus 589 ----------------~~~gd~gwdvfsl~y~v~~p~s~v~t~~~~~~ylrif~flwrlkR~e~~L~~~i--~k~~m~~~ 650 (879)
T KOG2000|consen 589 ----------------LSHGDDGWDVFSLDYAVDGPLSLVLTRELMLKYLRVFNFLWKLKRVEFLLELHI--WKMLMKDC 650 (879)
T ss_pred ----------------ccCCcccceeeeecceecccHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhh
Confidence 145789999999999999999999999999999999999999999999994 44 64321
Q ss_pred c--CCc------cchhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003058 818 R--SLA------TNSHSHKRHWLVEQKLLHFVDAFHQYVMDRV 852 (852)
Q Consensus 818 ~--~~~------~~~~~~~~~~~LR~~Ml~Fv~~L~~Yl~~eV 852 (852)
+ ... .....+++++.+..+|.||+.++|+|++++|
T Consensus 651 ~~~~~~~~~~i~~~~~~~~r~h~~~~E~~~f~sq~q~y~~f~v 693 (879)
T KOG2000|consen 651 NVAKRDRLLKIPEISCALHRCHILTNEMNHFISQMQYYILFEV 693 (879)
T ss_pred cccccchhcchHHHHhhhhhhhhHHHHHHHHHHhhhhccccch
Confidence 1 111 1123578899999999999999999999885
No 4
>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-43 Score=378.94 Aligned_cols=524 Identities=18% Similarity=0.273 Sum_probs=330.0
Q ss_pred HHHHHHHhhcCCCCCeEEEeCCCccEEEecCceeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--c---------
Q 003058 42 LVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVTRVET--T--------- 110 (852)
Q Consensus 42 LvrdlL~~L~Gi~g~~f~~~~~~~~f~i~~~i~vs~ls~~sl~~Ll~~~l~lG~~~~~Lr~Fve~~~~--~--------- 110 (852)
+++|+|.+|.|.+|..|.++...+....+.++ +...+++.++++++++.+|..|+.+.+|++-.+. +
T Consensus 1 MiHeLLLAl~g~~g~~~~~~~R~~GLa~~~d~--p~FihPsEr~i~~rliklg~~Y~e~~rFtswIrsvTsH~~~r~~~~ 78 (679)
T KOG2065|consen 1 MIHELLLALRGHNGEQLGIKARFNGLAETTDI--PQFIHPSEREIFMRLIKLGKVYQEVERFTSWIRSVTSHSSGRKSDT 78 (679)
T ss_pred CHHHHHHHHhCCChhheeehhhccccccccCC--ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccc
Confidence 48999999999999999976422122233222 2233489999999999999999887777743321 1
Q ss_pred -----CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhhhhHHHHHHHHhccCCccccc
Q 003058 111 -----GRISSPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTLLGLASSLSSLCSGGEYLLQIVDGAIPQVCFQ 185 (852)
Q Consensus 111 -----~~~~g~v~qAf~~aL~~~L~~Y~~~l~~LE~~l~~~~~~~~~TLl~L~~~L~~~~~~l~~L~~l~~~~i~~~~~~ 185 (852)
....|.+..|||.+|...|+.|+..|..+|+.+.. ...++|..++..+...+-+...++.++.++-.
T Consensus 79 s~q~~~~lhg~Ylra~a~Gi~~~L~~Yr~ail~lEq~~Lg---~~~~sls~V~~~L~~ff~Lfp~~~~vi~eI~~----- 150 (679)
T KOG2065|consen 79 SGQLPDSLHGYYLRALAKGIEMALEEYRAAILRLEQYCLG---NERNSLSYVYNALYAFFPLFPFMRNVITEIHV----- 150 (679)
T ss_pred cccCCCccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHhhhhhHHHHHHHHHHHh-----
Confidence 12368899999999999999999999999999884 46788888888877766666666666643221
Q ss_pred CCCCCCcccchHHHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCCCcceEEecCCCCC
Q 003058 186 FNMPVPAAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFYANRAISV 265 (852)
Q Consensus 186 ~~~~~~~~~~G~~LLs~Ly~~~~~~~~~~~Gd~~~~~ll~~Ll~~~~~PYl~~L~~WI~~G~L~Dp~~EFFI~~~~~v~~ 265 (852)
...+||+||..||++ +| |.|+++.-+..++..|-...++.|..||.+|.|.||++||||+..+..++
T Consensus 151 ------~~irGcqlL~~l~k~---HC----g~p~ir~~l~~~l~~~h~vmy~qLaaWml~Gvl~D~H~EFFIK~q~~~~~ 217 (679)
T KOG2065|consen 151 ------LNIRGCQLLHNLHKQ---HC----GHPDIRLELAIKLKPVHNVMYSQLAAWMLFGVLDDVHSEFFIKFQPTDAV 217 (679)
T ss_pred ------cccchhHHHHHHHHh---cc----CCCcHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccchheEEeccCCCCC
Confidence 236999999999964 35 78999999999999999999999999999999999999999997765444
Q ss_pred Cchhhcccce-EEEeccccccccccccccccCccccchhhhhhcCccccccccccCCCCCCCCcchHHHHHHHHHHhHHH
Q 003058 266 DKAEFWEKSY-VLRQLQCWKLDAESSSLTSESSHVRETNEKRQNGLRESISLSSSVKGLQACPLFIKDIAKSIISAGKSL 344 (852)
Q Consensus 266 ~~~~~W~~~y-~lr~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~~~~~~~~~~~vP~FL~~~a~kIl~~GKsl 344 (852)
+...+=++.- .+-- -+.+| + ...++|- +.-.-+.++.+||.+
T Consensus 218 d~ss~~ee~~e~L~v----------hsLTg----i----------------------~l~~l~D-~rl~~E~nm~a~~~~ 260 (679)
T KOG2065|consen 218 DGSSFSEEATESLLV----------HSLTG----I----------------------ALKNLED-YRLQYEVNMSALPGF 260 (679)
T ss_pred CcccCchhhhhhhhh----------cccch----h----------------------hhhchhh-hhHHHHHhhhccccc
Confidence 3221100000 0000 00000 0 0011221 111223444444444
Q ss_pred HHHHhhcCCCCcchhhhccCCCCCCCCccccccccccccchhHHHHHHhhhccCCCcccccccccCCCCCCcccCCCccc
Q 003058 345 QLIRHVSSKSNDDRIECLGNFNYGSDWSTVHRGQSIAGLTLSEIFCISLAGLIGHGDHIFRYFWQDDSCESEFIPSLPSY 424 (852)
Q Consensus 345 ~lLr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 424 (852)
..|+...+..- ++.. ++ +.+- +..+.+. . .
T Consensus 261 ~sl~~~s~~l~---v~~~--------------------~s--------~~~~---~R~~~~i-------------~---F 290 (679)
T KOG2065|consen 261 FSLVLASKVLF---VGQT--------------------VS--------VFKM---GRNVKVI-------------N---F 290 (679)
T ss_pred eeeecccccee---eccc--------------------hH--------HHhh---ccceeee-------------e---c
Confidence 44433221110 0000 00 0000 0000000 0 0
Q ss_pred ccchhccCCCcccccccccchhhHHHHHHhhhhhhcccccccCCcccCCCCcccccccchhhhcccccccccCCCCCccc
Q 003058 425 MNDQMTRNGNTETLAVLTHSEKTWFKFLLDTLLQKGVIDQKSGNKVASNVPNMKEENMGKIIENNLFTQKTFCPENPVIS 504 (852)
Q Consensus 425 ~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~~ 504 (852)
+++..+.+.++ +| ...+
T Consensus 291 ~~~~~~~~e~e--------------------------ld-------------------------------------~dlt 307 (679)
T KOG2065|consen 291 KTDPLAAKEAE--------------------------LD-------------------------------------SDLT 307 (679)
T ss_pred cCCchhhHHhh--------------------------cc-------------------------------------ccch
Confidence 00000000000 00 0000
Q ss_pred ccccccccccccchhhhhhhccccCCCCCChHHHHHHHhccccCCcccccCCCccccccccccchhhcccccccccccCC
Q 003058 505 VCDVSLNINKSSNIWNALNLSRNYYLPPLNDEVLRKAVLGAESGNISELKGTNYAFGFQFGESEHLRSQCDTKLLEVLFP 584 (852)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~p 584 (852)
- +..+.|.
T Consensus 308 ~--------------------------------------------G~ll~~~---------------------------- 315 (679)
T KOG2065|consen 308 Y--------------------------------------------GQLLSGR---------------------------- 315 (679)
T ss_pred h--------------------------------------------hhhcCCC----------------------------
Confidence 0 0000000
Q ss_pred CCccCCCcccccccccccccccCCCCccchhccccccCCCCCCCcHHHHhhhhhHHHHHHHHHHHHHHHHHhhccccHHH
Q 003058 585 FPTILPSFRDELHISELLPFQKNSTLPSRVLSWIQSVEPRTTPLPVVIMQECLTVYIKKQVDHIGKLILSNLMNDWRLMD 664 (852)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~l~~~l~~~I~~~y~~a~~~Ll~~L~~~~~L~~ 664 (852)
+ +++..++-+ +..++...+.-.||++.-|+ ..|+.+|+++.+.+-+|.+
T Consensus 316 ---------------------E-d~f~aml~d------Lk~~~~f~~~~fE~vVd~ir---~~va~hLw~l~V~e~DL~g 364 (679)
T KOG2065|consen 316 ---------------------E-DEFFAMLVD------LKNEDTFNVFRFEKVVDDIR---NYVAAHLWELAVNEVDLEG 364 (679)
T ss_pred ---------------------h-HHHHHHHHh------hhcCCceeeeeHHHHHHHHH---HHHHHHHHHHHHhHHhHHh
Confidence 0 000000000 00011111222345444444 4899999999999999999
Q ss_pred HHHHHHHhhhcCCcchHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhcccccccCCC--CCceEEEEEecCCCCCCCC
Q 003058 665 ELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESIRNSADGKLLSA--PDALEVLITESHGSNSDEQ 742 (852)
Q Consensus 665 hL~aLr~yfLL~~GDf~~~F~~~l~~~L~k~~~~~~~~~L~~lL~~Al~~ss~~~~~~d--~~~L~~~l~~~~~~~~~~~ 742 (852)
||+++|+|||||+|||++.|++..-..+..|+.....++++.-+|.|.-..... .| -+++.+.+... |.+.+++
T Consensus 365 qlk~iKDffLLgrGeffq~F~~~~~~~m~tpp~~~tE~dv~v~FqlaAtkt~~~---dDkyl~~~sL~~~~~-grs~~aD 440 (679)
T KOG2065|consen 365 QLKLIKDFFLLGRGEFFQEFCSQMVGTMETPPEERTEKDVTVSFQLAATKTGIT---DDKYLDKFSLICQRS-GRSEPAD 440 (679)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhhCCchhhcccccchhhhhhhhhcccc---ccccccceEEEeccc-CCCCccc
Confidence 999999999999999999999999999999998888899999999987655321 23 25666655432 2222222
Q ss_pred ccccccCCCCCCCCCCCCCccccceEEEEEeecCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHh--c
Q 003058 743 PSMANLASTPRKSHPHSFGIDGLDLLKFTYKVSWPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRW---MWK--G 817 (852)
Q Consensus 743 ~~~~~~~~~~r~~~~~~~~~~g~d~~~L~Y~V~WPLslIit~~~m~~Yq~IFrfLl~lKr~e~~L~~~~~W---~~~--~ 817 (852)
....+. -.++ ....-+.+|||++.|.|+|+|||++.|||.++.+||.||+||+.+||.++.|+++ | +|+ .
T Consensus 441 ~~~~~t-Gka~--ltsdtsvdGWdAl~L~Y~v~WPl~llFtp~~~e~yn~VF~yLl~irr~Q~Elq~~--WA~qm~r~h~ 515 (679)
T KOG2065|consen 441 TSDFNT-GKAF--LTSDTSVDGWDALSLKYEVEWPLNLLFTPTTIERYNNVFRYLLIIRRYQYELQRV--WAKQMWRAHS 515 (679)
T ss_pred hhhhcc-Cccc--ccCCCCccchhhhceeeEeccchheeechhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHh
Confidence 111110 0011 2223468899999999999999999999999999999999999999999999999 7 332 2
Q ss_pred cCCc-cchhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 003058 818 RSLA-TNSHSHKRHWLVEQKLLHFVDAFHQYVMDRV 852 (852)
Q Consensus 818 ~~~~-~~~~~~~~~~~LR~~Ml~Fv~~L~~Yl~~eV 852 (852)
.+.. +.++.++ |.||+.|.+|++|||||++.+|
T Consensus 516 ~s~q~~d~~~I~--WRlRnhmaFl~~NlQyYiQVDV 549 (679)
T KOG2065|consen 516 ASDQPPDNKIIT--WRLRNHMAFLLNNLQYYIQVDV 549 (679)
T ss_pred hccCCCCCccch--HHHHHHHHHHHhhhheeeeehh
Confidence 1111 2332233 8999999999999999998876
No 5
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.3e-33 Score=307.50 Aligned_cols=627 Identities=19% Similarity=0.184 Sum_probs=409.2
Q ss_pred cCCCCcccCCHHHHHHHHHHhhcCCCCCeEEEeCCCccEEEecCceeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003058 29 ATPVSSSRTNEVDLVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVTRVE 108 (852)
Q Consensus 29 ~~~~~~~~i~E~~LvrdlL~~L~Gi~g~~f~~~~~~~~f~i~~~i~vs~ls~~sl~~Ll~~~l~lG~~~~~Lr~Fve~~~ 108 (852)
..|-+.+.|+|...+++-+|.+.|.+.-|++ ...++.......+.++|++.+..+..++.+.-+|.....|..|+....
T Consensus 282 qlPddrvlvtepprifeqlWllggtdkLFif-ihidgkcqdrhlialphlahpcdnfaleqiaalghnafgLlafidekm 360 (1121)
T KOG4344|consen 282 QLPDDRVLVTEPPRIFEQLWLLGGTDKLFIF-IHIDGKCQDRHLIALPHLAHPCDNFALEQIAALGHNAFGLLAFIDEKM 360 (1121)
T ss_pred cCCCcccccCCCCcHHHHHHHhcCCceEEEE-EeecceeeeeeeeeccccccchHHHHHHHHHHhhhhHHHHHhccchhc
Confidence 3455567899999999999999999988876 334445566677888999999999999999999999999999987653
Q ss_pred hcC----------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhhhh--HHH
Q 003058 109 TTG----------------RISSPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTLLGLASSLSSLCSG--GEY 170 (852)
Q Consensus 109 ~~~----------------~~~g~v~qAf~~aL~~~L~~Y~~~l~~LE~~l~~~~~~~~~TLl~L~~~L~~~~~~--l~~ 170 (852)
... ...-.+.+||..++-+..-.|.+.++.++.-+.. ...+.+|..+...+.+.... +..
T Consensus 361 ghepcllleglfmfpkkascafFefdkAfmralvkdfisfkeelaeIckcian--ndqnflLadVVdaLadmlelrhiid 438 (1121)
T KOG4344|consen 361 GHEPCLLLEGLFMFPKKASCAFFEFDKAFMRALVKDFISFKEELAEICKCIAN--NDQNFLLADVVDALADMLELRHIID 438 (1121)
T ss_pred cCCchHhhhhcccccCccccchhhHHHHHHHHHHHHHhhhHHHHHhHHhhhhc--CCceeeHHHHHHHHHHHHhhHHHHH
Confidence 210 1123578999999999888899999998887664 23567787777777765432 222
Q ss_pred HHHHHhccCCcccccCC-CCCCc----ccchHHHHHHHHHHHHhhhhhcCCChHH-HHHHHHHHHHhHHHHHHHHHHHHh
Q 003058 171 LLQIVDGAIPQVCFQFN-MPVPA----AQVAVHILDYLYKKLDEVCLVQGGEVEE-YQMLLHIFVGSLLPYIEGLDSWLF 244 (852)
Q Consensus 171 L~~l~~~~i~~~~~~~~-~~~~~----~~~G~~LLs~Ly~~~~~~~~~~~Gd~~~-~~ll~~Ll~~~~~PYl~~L~~WI~ 244 (852)
+..+ |-.| +..++ ......||+-||+.+..|......|+.. .-++..|......||++.++.|+.
T Consensus 439 lHkl---------ffhGVaetppdeffavgardLlnpickaiiaYddrgeadeakntlilFsiefeehfpqLqlldElae 509 (1121)
T KOG4344|consen 439 LHKL---------FFHGVAETPPDEFFAVGARDLLNPICKAIIAYDDRGEADEAKNTLILFSIEFEEHFPQLQLLDELAE 509 (1121)
T ss_pred HHHH---------hhcccccCCCchhhhhhHHHHHHHHHHHHHHhccccccCcccceEEEEEEehhhhhHHHHHHHHHHH
Confidence 2222 2233 22333 2466789999999987765333334433 345567788999999999999999
Q ss_pred cccccCCCCcceEEecCCCCCCchhhcccceEEEeccccccccccccccccCccccchhhhhhcCcccccc--ccccCCC
Q 003058 245 EGMLDDPYEEMFFYANRAISVDKAEFWEKSYVLRQLQCWKLDAESSSLTSESSHVRETNEKRQNGLRESIS--LSSSVKG 322 (852)
Q Consensus 245 ~G~L~Dp~~EFFI~~~~~v~~~~~~~W~~~y~lr~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~s~~--~~~~~~~ 322 (852)
+|.|+|...||.|+++++..+.+..||.--|+.-.. +..++|+++--+..+-.+ +.+...-
T Consensus 510 dghLddGaaefiiarlknrlvkHrdfqyaphqklat-----------------aekfeneekmcdiadassgraagedhl 572 (1121)
T KOG4344|consen 510 DGHLDDGAAEFIIARLKNRLVKHRDFQYAPHQKLAT-----------------AEKFENEEKMCDIADASSGRAAGEDHL 572 (1121)
T ss_pred hccccccHHHHHHHHHhccccccchhhhccHHHHHH-----------------HHHhhhHHHHhhhhccccccccChHHH
Confidence 999999999999999999888999999666543221 112223222111111001 0000000
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHhhcCCCCcchhhhc-cCCCCCCCCccccccccccccchhHHHHHHhhhccCCCc
Q 003058 323 LQACPLFIKDIAKSIISAGKSLQLIRHVSSKSNDDRIECL-GNFNYGSDWSTVHRGQSIAGLTLSEIFCISLAGLIGHGD 401 (852)
Q Consensus 323 ~~~vP~FL~~~a~kIl~~GKsl~lLr~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 401 (852)
...+-.|.++.-..|..+||+..+|..+.....+ -|. ..| -.....+||.+|+++.+.+.++|+
T Consensus 573 qefiVeFckeedaniimagkrkqllgnlqcaEdd---KOGaeaf------------daeqscpLYqLfLEhalergehgd 637 (1121)
T KOG4344|consen 573 QEFIVEFCKEEDANIIMAGKRKQLLGNLQCAEDD---LCLAEAF------------DAEQSCPLYQLFLEHALERGEHGD 637 (1121)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhccccccchh---hHHHHhh------------hhhhcCcHHHHHHHHHHHhccccc
Confidence 1123347778888999999999999965433221 121 111 012235799999999999888876
Q ss_pred ccccccccCCCCCCcccCCCcccccch-hccCCCcccccccccchhhHHHHHHhhhhhhcccccccCCcccCCCCccccc
Q 003058 402 HIFRYFWQDDSCESEFIPSLPSYMNDQ-MTRNGNTETLAVLTHSEKTWFKFLLDTLLQKGVIDQKSGNKVASNVPNMKEE 480 (852)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 480 (852)
.. | + +.+++.+ ++.|++ .|+...+. .
T Consensus 638 dl---------c-s------pntLsEmlqankEi--qLmklhde-a---------------------------------- 664 (1121)
T KOG4344|consen 638 DL---------C-S------PNTLSEMLQANKEI--QLMKLHDE-A---------------------------------- 664 (1121)
T ss_pred cc---------c-C------HHHHHHHHhhcccc--chhhHHHH-H----------------------------------
Confidence 63 1 1 1223333 222221 11111100 0
Q ss_pred ccchhhhcccccccccCCCCCcccccccccccccccchhhhhhhccccCCCCCChHHHHHHHhccccCCcccccCCCccc
Q 003058 481 NMGKIIENNLFTQKTFCPENPVISVCDVSLNINKSSNIWNALNLSRNYYLPPLNDEVLRKAVLGAESGNISELKGTNYAF 560 (852)
Q Consensus 481 ~~~~~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (852)
-.--++.+.+| |+.+ ++||++.+ . .+.++.+. ..|++-|
T Consensus 665 -eshffalddVh----cgad--------------------aidfadep-e---edkDfedk-----------facgdvc- 703 (1121)
T KOG4344|consen 665 -ESHFFALDDVH----CGAD--------------------AIDFADEP-E---EDKDFEDK-----------FACGDVC- 703 (1121)
T ss_pred -HHhHHHHhhcc----Cccc--------------------ccchhhCC-C---ccccHHHh-----------hcccccc-
Confidence 00001122222 2222 23444443 1 11111111 1223322
Q ss_pred cccccccchhhcccccccccccCCCCccCCCcccccccccccccccCCCCccchhccccccCCCCCCCcHHHHhhhhhHH
Q 003058 561 GFQFGESEHLRSQCDTKLLEVLFPFPTILPSFRDELHISELLPFQKNSTLPSRVLSWIQSVEPRTTPLPVVIMQECLTVY 640 (852)
Q Consensus 561 ~~~~~~~~~~~~q~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~p~~~l~~~l~~~ 640 (852)
+++| |.. +-+ .++-.++|.|+.++
T Consensus 704 ---vdrs-----qei----------------------------------------rnc--------elFaiflqpcleph 727 (1121)
T KOG4344|consen 704 ---VDRS-----QEI----------------------------------------RNC--------ELFAIFLQPCLEPH 727 (1121)
T ss_pred ---cccc-----ccc----------------------------------------eeh--------hhHHHHhhhhhhHH
Confidence 2221 111 001 12236789999999
Q ss_pred HHHH--HHHHHHHHHHHhhccccHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhccccc
Q 003058 641 IKKQ--VDHIGKLILSNLMNDWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGENWDDDFELNTLLQESIRNSADG 718 (852)
Q Consensus 641 I~~~--y~~a~~~Ll~~L~~~~~L~~hL~aLr~yfLL~~GDf~~~F~~~l~~~L~k~~~~~~~~~L~~lL~~Al~~ss~~ 718 (852)
|++| |--++..||.-+.+++.+.+.|++.|.||++..||.+..|...++..+...-+|.+...++..|++|+.--- .
T Consensus 728 idkQrerLdccgnLManikKdlelsecLQakreffeaegedlmrdfwlaiedaIRakckeqnVaekmrfLqeamglek-r 806 (1121)
T KOG4344|consen 728 IDKQRERLDCCGNLMANIKKDLELSECLQAKREFFEAEGEDLMRDFWLAIEDAIRAKCKEQNVAEKMRFLQEAMGLEK-R 806 (1121)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhhhh-c
Confidence 9999 888999999999999999999999999999999999999999999999999999999999999999987321 1
Q ss_pred ccC-CCCCceEEEEEecCCCCCCCCcc-------------c---cc---c-CCCCCCCCCCCCCccccceEEEEEe--ec
Q 003058 719 KLL-SAPDALEVLITESHGSNSDEQPS-------------M---AN---L-ASTPRKSHPHSFGIDGLDLLKFTYK--VS 775 (852)
Q Consensus 719 ~~~-~d~~~L~~~l~~~~~~~~~~~~~-------------~---~~---~-~~~~r~~~~~~~~~~g~d~~~L~Y~--V~ 775 (852)
+.+ .|.++|.+++...-... ...++ . ++ . ...+-+ ..+.+.+.++|+++|+|+ ++
T Consensus 807 YlfvedsnaLfirfEnvdnak-kaLgsvltsklcavllphypqlahylhvklisqin-snsikvveaLdaieLdferpma 884 (1121)
T KOG4344|consen 807 YLFVEDSNALFIRFENVDNAK-KALGSVLTSKLCAVLLPHYPQLAHYLHVKLISQIN-SNSIKVVEALDAIELDFERPMA 884 (1121)
T ss_pred ccccccccceeEEeecccchh-hhcchhhhhhhhhhhcccchhhhhHHHHHHHhhhc-ccchhhhhhhhheeecccCCcc
Confidence 111 34567777776331000 00000 0 00 0 000000 112335778999999999 99
Q ss_pred CccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----H-HhccC-----------------CccchhhhHHHHHH
Q 003058 776 WPLELIANMEAIKKYNQVMGFLLKVKRAKFALDKARRW----M-WKGRS-----------------LATNSHSHKRHWLV 833 (852)
Q Consensus 776 WPLslIit~~~m~~Yq~IFrfLl~lKr~e~~L~~~~~W----~-~~~~~-----------------~~~~~~~~~~~~~L 833 (852)
||..+||++.+|+.||.||+.|+++||+.|.|.++-|= + .+.|. ....+.+.+|+.++
T Consensus 885 mhqdiiislacmkdYNqVflLlLkiKWAkwkLdnllfgelvsmaekpRakegliheqdtvaqfcapkdliglqIhRleil 964 (1121)
T KOG4344|consen 885 MHQDIIISLACMKDYNQVFLLLLKIKWAKWKLDNLLFGELVSMAEKPRAKEGLIHEQDTVAQFCAPKDLIGLQIHRLEIL 964 (1121)
T ss_pred cchheEecHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhccccccccccccCCCccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999995210 0 01110 11234579999999
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 003058 834 EQKLLHFVDAFHQYVMDRV 852 (852)
Q Consensus 834 R~~Ml~Fv~~L~~Yl~~eV 852 (852)
|.+++|||++|+.|+|+.|
T Consensus 965 RfkLiffiNnLHahIMeai 983 (1121)
T KOG4344|consen 965 RFKLIFFINNLHAHIMEAI 983 (1121)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999864
No 6
>PF14609 GCP5-Mod21: gamma-Tubulin ring complex non-core subunit mod21
Probab=67.48 E-value=42 Score=38.83 Aligned_cols=69 Identities=17% Similarity=0.155 Sum_probs=54.7
Q ss_pred cccCCHHHHHHHHHHhhcCCCCCeEEEeCCCccEEEecCceeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003058 34 SSRTNEVDLVRGVLQMLQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCLKLVEISVTR 106 (852)
Q Consensus 34 ~~~i~E~~LvrdlL~~L~Gi~g~~f~~~~~~~~f~i~~~i~vs~ls~~sl~~Ll~~~l~lG~~~~~Lr~Fve~ 106 (852)
.+.++|.-+++|++|||.|.+|.+|. + -.+.|..-| .+.|++..-++.++..++..|.-+..+++....
T Consensus 177 ~~riseqs~~~e~IymL~Gy~~~~f~-~-ve~~l~~~P--~~~~ls~~i~~~il~~~~~~G~~l~~~nqva~~ 245 (653)
T PF14609_consen 177 VYRISEQSWKYEIIYMLMGYQGHIFT-C-VEEILRHAP--QNQHLSYWIQQHILSNFCNWGRELHIMNQVANE 245 (653)
T ss_pred heeecccchHHHHHHHHhcCcchhhh-h-hHhhhcccc--cccchHHHHHHHHHHHhhccccchHHHHHHhCC
Confidence 34688999999999999999999996 2 223444445 556888888899999999999999888865544
No 7
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.55 E-value=8.1 Score=45.56 Aligned_cols=210 Identities=12% Similarity=0.010 Sum_probs=118.9
Q ss_pred cccCCHHHHHHHHHHhhcCCCCCeE-EEeCCCccEEEecCc------------eeecCCHHHHHHHHHHHHHHHHHHHHH
Q 003058 34 SSRTNEVDLVRGVLQMLQGLSSSLF-YWDESVRSFCVKTGI------------YVTHLSLKSVHVVLNQFIYAATCLKLV 100 (852)
Q Consensus 34 ~~~i~E~~LvrdlL~~L~Gi~g~~f-~~~~~~~~f~i~~~i------------~vs~ls~~sl~~Ll~~~l~lG~~~~~L 100 (852)
++..+|..++++.++|+---.+..| .+++......+...+ .++.-..-.+..++..+.+.-.+
T Consensus 358 ekmghepcllleglfmfpkkascafFefdkAfmralvkdfisfkeelaeIckcianndqnflLadVVdaLadmlel---- 433 (1121)
T KOG4344|consen 358 EKMGHEPCLLLEGLFMFPKKASCAFFEFDKAFMRALVKDFISFKEELAEICKCIANNDQNFLLADVVDALADMLEL---- 433 (1121)
T ss_pred hhccCCchHhhhhcccccCccccchhhHHHHHHHHHHHHHhhhHHHHHhHHhhhhcCCceeeHHHHHHHHHHHHhh----
Confidence 3457888999999999988877754 343321110111111 00000011233334433333222
Q ss_pred HHHHHhhh--hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHhhhhhHHHHHHHHhcc
Q 003058 101 EISVTRVE--TTGRISSPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTLLGLASSLSSLCSGGEYLLQIVDGA 178 (852)
Q Consensus 101 r~Fve~~~--~~~~~~g~v~qAf~~aL~~~L~~Y~~~l~~LE~~l~~~~~~~~~TLl~L~~~L~~~~~~l~~L~~l~~~~ 178 (852)
|..+.... -.+....+...-|+-+.++.|+...+.|...+........ .-|++...-+++..+..++.|..++...
T Consensus 434 rhiidlHklffhGVaetppdeffavgardLlnpickaiiaYddrgeadea--kntlilFsiefeehfpqLqlldElaedg 511 (1121)
T KOG4344|consen 434 RHIIDLHKLFFHGVAETPPDEFFAVGARDLLNPICKAIIAYDDRGEADEA--KNTLILFSIEFEEHFPQLQLLDELAEDG 511 (1121)
T ss_pred HHHHHHHHHhhcccccCCCchhhhhhHHHHHHHHHHHHHHhccccccCcc--cceEEEEEEehhhhhHHHHHHHHHHHhc
Confidence 22221110 0112345666778889999999988888877665543221 2233322334444445556666665432
Q ss_pred CCcccccCCCCCCcccchHHHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCCCcceEE
Q 003058 179 IPQVCFQFNMPVPAAQVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLDDPYEEMFFY 258 (852)
Q Consensus 179 i~~~~~~~~~~~~~~~~G~~LLs~Ly~~~~~~~~~~~Gd~~~~~ll~~Ll~~~~~PYl~~L~~WI~~G~L~Dp~~EFFI~ 258 (852)
+.. .| +..-.-..+++.+|.+.+- --.....+..........-|+...+.|.......|.-.||+|.
T Consensus 512 hLd----dG---aaefiiarlknrlvkHrdf------qyaphqklataekfeneekmcdiadassgraagedhlqefiVe 578 (1121)
T KOG4344|consen 512 HLD----DG---AAEFIIARLKNRLVKHRDF------QYAPHQKLATAEKFENEEKMCDIADASSGRAAGEDHLQEFIVE 578 (1121)
T ss_pred ccc----cc---HHHHHHHHHhccccccchh------hhccHHHHHHHHHhhhHHHHhhhhccccccccChHHHHHHHHH
Confidence 221 12 2224556777777754321 1234567778888888999999999999999999999999997
Q ss_pred ecCC
Q 003058 259 ANRA 262 (852)
Q Consensus 259 ~~~~ 262 (852)
..+.
T Consensus 579 Fcke 582 (1121)
T KOG4344|consen 579 FCKE 582 (1121)
T ss_pred HHHH
Confidence 7654
No 8
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=28.56 E-value=4.6e+02 Score=23.93 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=52.2
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHH
Q 003058 84 HVVLNQFIYA----ATCLKLVEISVTRVETTGRISSPTLRAFSSAVSAWLKMFRGIALKEEMKITESNVGNTPTLLGLAS 159 (852)
Q Consensus 84 ~~Ll~~~l~l----G~~~~~Lr~Fve~~~~~~~~~g~v~qAf~~aL~~~L~~Y~~~l~~LE~~l~~~~~~~~~TLl~L~~ 159 (852)
++++.+|..+ +..|.+++.=...+-.+ .....++++|..|..........|..+|..+.. ....+.+..++.
T Consensus 2 ~~Ll~~f~~~Qe~Ra~~Y~~~~~gf~~yl~~--~~~~~y~~~~~~iT~~f~~~S~ei~~ie~~L~~--~~~~~~la~~i~ 77 (97)
T PF14966_consen 2 RELLRRFFALQERRAQLYNRFEEGFKKYLRS--GPEEAYRQLCHEITQEFSAISKEILAIEAELRD--EHERPDLAELIR 77 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCHHHHHHHH
Confidence 4677777765 67777766655554332 234788888888888888888899999999873 123455666666
Q ss_pred HHHh
Q 003058 160 SLSS 163 (852)
Q Consensus 160 ~L~~ 163 (852)
.++.
T Consensus 78 ~lQ~ 81 (97)
T PF14966_consen 78 ELQE 81 (97)
T ss_pred HHHH
Confidence 6654
No 9
>PF10824 DUF2580: Protein of unknown function (DUF2580); InterPro: IPR022536 This entry represents the ESX-1 secretion-associated protein EspC protein family.
Probab=23.55 E-value=4.9e+02 Score=22.62 Aligned_cols=64 Identities=14% Similarity=0.040 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003058 79 SLKSVHVVLNQFIYAATCLKLVEISV-TRVETTGRISSPTLRAFSSAVSAWLKMFRGIALKEEMK 142 (852)
Q Consensus 79 s~~sl~~Ll~~~l~lG~~~~~Lr~Fv-e~~~~~~~~~g~v~qAf~~aL~~~L~~Y~~~l~~LE~~ 142 (852)
.|..|+.+-..+-.++..+.....-+ ..........|++..+|..++...+......+..+-..
T Consensus 8 dp~~Lr~~A~~~~~~A~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (100)
T PF10824_consen 8 DPEALRQAAAQLDDIADQLAAAASAVAGASAAVAAAFGPIGAAFAAALAEALEARQAALEQLAEA 72 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhcchhccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888998888888888887766655 22111224578999999999999888877666654433
No 10
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=15.32 E-value=72 Score=28.00 Aligned_cols=31 Identities=26% Similarity=0.521 Sum_probs=24.6
Q ss_pred EEeec---CccceeeCHHH-HHHHHHHHHHHHHHH
Q 003058 771 TYKVS---WPLELIANMEA-IKKYNQVMGFLLKVK 801 (852)
Q Consensus 771 ~Y~V~---WPLslIit~~~-m~~Yq~IFrfLl~lK 801 (852)
+|++| |+.++.+...+ +..|..+|+.|+.+=
T Consensus 41 qYniP~s~WttsMf~~Q~ami~vYS~VFT~L~sIP 75 (85)
T PF10749_consen 41 QYNIPFSEWTTSMFILQGAMILVYSIVFTILLSIP 75 (85)
T ss_pred HhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666 99999887654 578999999998764
Done!