Query 003058
Match_columns 852
No_of_seqs 251 out of 817
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 11:47:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003058.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003058hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k3ea_ d.198.1.1 (A:) Secreti 21.3 54 0.0039 28.2 5.4 48 50-97 76-123 (146)
2 d1pb6a2 a.121.1.1 (A:86-211) H 12.6 72 0.0052 26.4 3.7 35 215-249 35-69 (126)
3 d2a0ba_ a.24.10.1 (A:) Aerobic 4.7 7E+02 0.051 19.2 10.5 30 216-245 87-116 (118)
4 d1rkta2 a.121.1.1 (A:83-205) H 4.6 7.5E+02 0.055 19.5 7.6 35 215-249 36-70 (123)
5 d2hyja2 a.121.1.1 (A:83-200) P 4.5 7E+02 0.051 19.1 6.5 48 195-249 25-72 (118)
6 d1bxni_ d.73.1.1 (I:) Ribulose 4.4 1.6E+02 0.012 24.9 1.9 15 528-542 9-23 (129)
7 d2id3a2 a.121.1.1 (A:81-203) P 4.4 7.2E+02 0.053 19.5 6.5 49 194-249 24-72 (123)
8 d1bwvs_ d.73.1.1 (S:) Ribulose 4.2 1.7E+02 0.013 25.0 2.0 15 528-542 9-23 (138)
9 d1rbli_ d.73.1.1 (I:) Ribulose 4.0 1.8E+02 0.013 23.7 1.9 16 527-542 14-29 (109)
10 d1svdm1 d.73.1.1 (M:3-110) Rib 3.9 1.9E+02 0.014 23.6 2.0 18 525-542 12-29 (108)
No 1
>d1k3ea_ d.198.1.1 (A:) Secretion chaperone CesT {Escherichia coli [TaxId: 562]}
Probab=21.29 E-value=54 Score=28.18 Aligned_cols=48 Identities=4% Similarity=0.104 Sum_probs=39.7
Q ss_pred hcCCCCCeEEEeCCCccEEEecCceeecCCHHHHHHHHHHHHHHHHHH
Q 003058 50 LQGLSSSLFYWDESVRSFCVKTGIYVTHLSLKSVHVVLNQFIYAATCL 97 (852)
Q Consensus 50 L~Gi~g~~f~~~~~~~~f~i~~~i~vs~ls~~sl~~Ll~~~l~lG~~~ 97 (852)
..+..|..|-+++.++.+.....+.+.++++..+.+.++.|++.....
T Consensus 76 ~~~~~g~~l~ld~~~~~llL~~~i~l~~l~~~~L~~~le~fI~~~e~~ 123 (146)
T d1k3ea_ 76 FAENGGPYLCYEAGAQSLLLALRFPLDDATPEKLENEIEVVVKSMENL 123 (146)
T ss_dssp HHHSSCCEEEEETTTTEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhCCeEEEEeCCCCeEEEeeccCcccCCHHHHHHHHHHHHHHHHHH
Confidence 556678889999988888888888899999999999999887755444
No 2
>d1pb6a2 a.121.1.1 (A:86-211) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=12.64 E-value=72 Score=26.39 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=28.3
Q ss_pred CCChHHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q 003058 215 GGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLD 249 (852)
Q Consensus 215 ~Gd~~~~~ll~~Ll~~~~~PYl~~L~~WI~~G~L~ 249 (852)
+|.+.....+...+..........|++|+..|.+.
T Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~il~~g~~~G~~r 69 (126)
T d1pb6a2 35 AGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLA 69 (126)
T ss_dssp TTCTTTHHHHHTHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 45666677777778888888889999999999874
No 3
>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}
Probab=4.65 E-value=7e+02 Score=19.15 Aligned_cols=30 Identities=10% Similarity=0.114 Sum_probs=19.1
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 003058 216 GEVEEYQMLLHIFVGSLLPYIEGLDSWLFE 245 (852)
Q Consensus 216 Gd~~~~~ll~~Ll~~~~~PYl~~L~~WI~~ 245 (852)
|+.....-+..-+.......++.|+.||.+
T Consensus 87 ~~~~~~~~~l~~l~~~~~~~~~~L~~~l~~ 116 (118)
T d2a0ba_ 87 AWEDNVGEWIEEMKEEWRHDVEVLKAWVAK 116 (118)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444444455667777778888888853
No 4
>d1rkta2 a.121.1.1 (A:83-205) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=4.63 E-value=7.5e+02 Score=19.50 Aligned_cols=35 Identities=14% Similarity=-0.007 Sum_probs=30.5
Q ss_pred CCChHHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q 003058 215 GGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLD 249 (852)
Q Consensus 215 ~Gd~~~~~ll~~Ll~~~~~PYl~~L~~WI~~G~L~ 249 (852)
.-||.++..+...+..-..-+-.+|..++..|++.
T Consensus 36 ~Rdpeir~~~~~~~~~~~~~l~~~i~~g~~~Ge~~ 70 (123)
T d1rkta2 36 WRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEFQ 70 (123)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 35999999999999998888888888888888874
No 5
>d2hyja2 a.121.1.1 (A:83-200) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=4.46 E-value=7e+02 Score=19.06 Aligned_cols=48 Identities=10% Similarity=-0.012 Sum_probs=38.4
Q ss_pred chHHHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q 003058 195 VAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLD 249 (852)
Q Consensus 195 ~G~~LLs~Ly~~~~~~~~~~~Gd~~~~~ll~~Ll~~~~~PYl~~L~~WI~~G~L~ 249 (852)
.||-+.+..-+. ...|+.+++.+...+...-.-+.+.|.+.+..|++.
T Consensus 25 ~GC~~~~~~~E~-------~~~~~~ir~~l~~~~~~~~~~l~~~l~~a~~~G~i~ 72 (118)
T d2hyja2 25 GGCLLTAALSEY-------DGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGELP 72 (118)
T ss_dssp TSCHHHHHHHHH-------TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCChhHhHHHHc-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 466666655432 357889999999999999999999999999999874
No 6
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Alcaligenes eutrophus [TaxId: 106590]}
Probab=4.39 E-value=1.6e+02 Score=24.89 Aligned_cols=15 Identities=40% Similarity=0.733 Sum_probs=12.8
Q ss_pred cCCCCCChHHHHHHH
Q 003058 528 YYLPPLNDEVLRKAV 542 (852)
Q Consensus 528 ~~~~~~~~~~~~~~~ 542 (852)
.|||||+++++.+.|
T Consensus 9 SyLP~Ltd~~I~~QV 23 (129)
T d1bxni_ 9 SFLPELTDEQITKQL 23 (129)
T ss_dssp TTSSCCCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHH
Confidence 479999999888876
No 7
>d2id3a2 a.121.1.1 (A:81-203) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=4.38 E-value=7.2e+02 Score=19.48 Aligned_cols=49 Identities=6% Similarity=-0.012 Sum_probs=37.8
Q ss_pred cchHHHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHhHHHHHHHHHHHHhccccc
Q 003058 194 QVAVHILDYLYKKLDEVCLVQGGEVEEYQMLLHIFVGSLLPYIEGLDSWLFEGMLD 249 (852)
Q Consensus 194 ~~G~~LLs~Ly~~~~~~~~~~~Gd~~~~~ll~~Ll~~~~~PYl~~L~~WI~~G~L~ 249 (852)
..++.++-.+.... +.+|.....+..++...-.-+-.+|++.+..|++.
T Consensus 24 p~~~~~~~~l~ae~-------~~~p~l~~~~~~~~~~r~~~~~~il~rA~~RGEl~ 72 (123)
T d2id3a2 24 PRQGRLFRALIAAS-------LCNEQAAEALHRFYAVRVDEWAGCVRDAVARGEVP 72 (123)
T ss_dssp HHHHHHHHHHHHHH-------HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred cchHHHHHHHHHHh-------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 35666766665433 23788888888888888888889999999999994
No 8
>d1bwvs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=4.18 E-value=1.7e+02 Score=24.95 Aligned_cols=15 Identities=40% Similarity=0.822 Sum_probs=12.8
Q ss_pred cCCCCCChHHHHHHH
Q 003058 528 YYLPPLNDEVLRKAV 542 (852)
Q Consensus 528 ~~~~~~~~~~~~~~~ 542 (852)
.|||||+++++.+.|
T Consensus 9 SyLP~LtdeqI~~QV 23 (138)
T d1bwvs_ 9 SFLPDLTDEQIKKQI 23 (138)
T ss_dssp TTSCCCCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHH
Confidence 479999999988876
No 9
>d1rbli_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Synechococcus sp., strain pcc 6301 [TaxId: 1131]}
Probab=3.96 E-value=1.8e+02 Score=23.73 Aligned_cols=16 Identities=38% Similarity=0.733 Sum_probs=13.2
Q ss_pred ccCCCCCChHHHHHHH
Q 003058 527 NYYLPPLNDEVLRKAV 542 (852)
Q Consensus 527 ~~~~~~~~~~~~~~~~ 542 (852)
-.|||||+++++.+.|
T Consensus 14 fSyLP~Ltd~~I~~QV 29 (109)
T d1rbli_ 14 FSYLPPLSDRQIAAQI 29 (109)
T ss_dssp TTTSSCCCHHHHHHHH
T ss_pred cccCCCCCHHHHHHHH
Confidence 3579999999888775
No 10
>d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Halothiobacillus neapolitanus [TaxId: 927]}
Probab=3.92 E-value=1.9e+02 Score=23.60 Aligned_cols=18 Identities=39% Similarity=0.739 Sum_probs=14.0
Q ss_pred ccccCCCCCChHHHHHHH
Q 003058 525 SRNYYLPPLNDEVLRKAV 542 (852)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~ 542 (852)
..-.|||||+++++.+.|
T Consensus 12 eTfSyLP~Ltde~I~~QV 29 (108)
T d1svdm1 12 ETFSYLPPMNAERIRAQI 29 (108)
T ss_dssp STTTTSCCCCHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHH
Confidence 334689999999887775
Done!