Query 003060
Match_columns 852
No_of_seqs 529 out of 3607
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 11:51:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v0w_A Phospholipase D; hydrol 100.0 2.2E-36 7.5E-41 352.1 17.5 151 250-463 66-224 (506)
2 3hsi_A Phosphatidylserine synt 100.0 6.9E-35 2.4E-39 332.6 14.5 355 217-742 24-401 (458)
3 2fk9_A Protein kinase C, ETA t 99.9 1.5E-22 5.1E-27 197.7 13.2 131 33-188 21-156 (157)
4 1xdp_A Polyphosphate kinase; P 99.9 6.6E-22 2.3E-26 233.6 16.3 273 250-743 347-632 (687)
5 2o8r_A Polyphosphate kinase; s 99.9 1.2E-21 4.1E-26 229.4 14.6 268 250-743 352-638 (705)
6 1gmi_A Protein kinase C, epsil 99.8 2.3E-20 7.8E-25 178.4 12.9 130 37-190 2-134 (136)
7 2ep6_A MCTP2 protein; beta san 99.8 7.8E-20 2.7E-24 173.9 14.6 121 38-188 10-131 (133)
8 1wfj_A Putative elicitor-respo 99.8 3.3E-20 1.1E-24 177.1 11.4 123 39-192 8-133 (136)
9 2dmh_A Myoferlin; beta-sandwic 99.8 3.6E-19 1.2E-23 170.7 15.1 123 40-192 6-136 (140)
10 3kwu_A MUNC13-1; calcium bindi 99.8 8.9E-19 3E-23 169.7 17.8 120 39-188 15-146 (148)
11 3b7y_A E3 ubiquitin-protein li 99.8 3.3E-19 1.1E-23 173.7 14.6 122 41-189 20-153 (153)
12 1rlw_A Phospholipase A2, CALB 99.8 6.7E-19 2.3E-23 165.6 12.6 121 40-189 2-125 (126)
13 3m7f_B E3 ubiquitin-protein li 99.8 2.1E-18 7.2E-23 172.3 15.5 123 41-190 8-142 (176)
14 3pyc_A E3 ubiquitin-protein li 99.7 9.5E-18 3.2E-22 159.2 13.6 120 41-187 5-131 (132)
15 2nq3_A Itchy homolog E3 ubiqui 99.7 7E-18 2.4E-22 167.9 13.1 127 37-192 32-164 (173)
16 2b3r_A Phosphatidylinositol-4- 99.7 2.7E-17 9.1E-22 156.7 12.5 105 38-169 17-130 (134)
17 1rsy_A Synaptotagmin I; calciu 99.7 3.1E-17 1.1E-21 159.7 11.9 105 39-169 40-150 (152)
18 2z0u_A WW domain-containing pr 99.7 1.5E-17 5.2E-22 162.4 7.8 103 40-168 42-154 (155)
19 3f04_A Synaptotagmin-1; C2A, c 99.7 4E-17 1.4E-21 157.0 10.4 104 39-168 32-141 (143)
20 2d8k_A Synaptotagmin VII; exoc 99.7 8.4E-17 2.9E-21 154.5 12.0 105 40-170 25-136 (141)
21 1a25_A CALB, protein kinase C 99.7 6.6E-17 2.3E-21 156.8 11.2 105 38-169 28-139 (149)
22 2q3x_A Regulating synaptic mem 99.7 5.4E-17 1.9E-21 161.3 10.8 107 39-170 28-140 (171)
23 3fdw_A Synaptotagmin-like prot 99.7 2.9E-17 9.9E-22 159.1 8.5 108 40-172 22-137 (148)
24 3rdl_A Protein kinase C alpha 99.7 7.1E-17 2.4E-21 153.9 11.0 105 39-170 14-125 (137)
25 1w15_A Synaptotagmin IV; metal 99.7 3.6E-17 1.2E-21 159.3 8.5 109 39-175 28-144 (153)
26 1rh8_A Piccolo protein; beta-s 99.7 2.1E-17 7.3E-22 158.7 6.5 107 38-170 15-139 (142)
27 2bwq_A Regulating synaptic mem 99.7 1.1E-16 3.7E-21 151.1 11.1 101 40-167 17-128 (129)
28 3n5a_A Synaptotagmin-7; calciu 99.7 2.4E-17 8.2E-22 157.3 6.4 108 40-175 15-130 (138)
29 2r83_A Synaptotagmin-1; C2A-C2 99.7 2.8E-16 9.7E-21 168.8 15.2 127 40-192 18-150 (284)
30 2dmg_A KIAA1228 protein; beta- 99.7 1.2E-16 4.1E-21 153.6 10.7 106 40-172 23-138 (142)
31 1wfm_A Synaptotagmin XIII; C2 99.7 1.7E-16 5.8E-21 151.9 11.7 102 40-170 25-133 (138)
32 4ggj_A Mitochondrial cardiolip 99.7 1.3E-16 4.4E-21 162.0 11.4 133 250-463 46-178 (196)
33 1v27_A Regulating synaptic mem 99.7 9.1E-17 3.1E-21 154.0 9.5 105 40-171 20-135 (141)
34 3fbk_A RGS3, RGP3, regulator o 99.7 1.8E-16 6E-21 154.5 11.4 106 39-171 25-139 (153)
35 2cm5_A Rabphilin-3A; protein t 99.7 4.6E-17 1.6E-21 160.9 7.1 108 40-175 36-151 (166)
36 2chd_A Rabphilin-3A, exophilin 99.7 1.8E-16 6E-21 152.4 10.1 105 39-169 27-140 (142)
37 3l9b_A Otoferlin; C2-domain, b 99.6 7.2E-16 2.5E-20 144.8 12.1 116 42-191 22-142 (144)
38 1ugk_A Synaptotagmin IV, KIAA1 99.6 6.4E-16 2.2E-20 147.7 11.6 105 40-169 21-133 (138)
39 1tjx_A Similar to synaptotagmi 99.6 8E-16 2.7E-20 150.8 12.1 91 39-155 23-121 (159)
40 2enp_A B/K protein; C2 type 1, 99.6 3.5E-16 1.2E-20 151.2 8.4 109 40-168 25-140 (147)
41 2cjt_A UNC-13 homolog A, MUNC1 99.6 2.6E-15 8.8E-20 142.3 11.3 84 41-157 5-90 (131)
42 1byr_A Protein (endonuclease); 99.6 1.2E-14 4E-19 141.6 12.5 133 250-462 14-148 (155)
43 1dqv_A Synaptotagmin III; beta 99.6 1.3E-14 4.5E-19 157.0 12.8 123 40-189 19-149 (296)
44 1djx_A PLC-D1, phosphoinositid 99.5 1.8E-14 6.3E-19 170.2 13.7 121 40-188 496-623 (624)
45 3bxj_A RAS GTPase-activating p 99.5 8E-16 2.8E-20 177.3 1.8 124 40-194 10-162 (483)
46 3jzy_A Intersectin 2; C2 domai 99.5 2.6E-14 8.8E-19 166.4 13.3 115 40-187 386-506 (510)
47 4gel_A Mitochondrial cardiolip 99.5 7.1E-15 2.4E-19 152.0 7.1 153 246-463 54-210 (220)
48 2cjs_A UNC-13 homolog A, MUNC1 99.5 4E-14 1.4E-18 139.7 11.1 85 41-157 14-99 (167)
49 3nsj_A Perforin-1; pore formin 99.5 9.4E-14 3.2E-18 160.7 14.0 108 41-189 394-504 (540)
50 1byr_A Protein (endonuclease); 99.5 4.8E-14 1.6E-18 137.3 9.8 117 544-741 14-130 (155)
51 2r83_A Synaptotagmin-1; C2A-C2 99.4 7E-14 2.4E-18 150.1 7.5 103 40-170 149-259 (284)
52 4ggj_A Mitochondrial cardiolip 99.4 1.5E-13 5E-18 139.5 8.3 131 544-766 46-176 (196)
53 1dqv_A Synaptotagmin III; beta 99.4 2.7E-14 9.4E-19 154.4 2.8 114 40-180 151-272 (296)
54 1cjy_A CPLA2, protein (cytosol 99.4 1.4E-13 4.8E-18 164.0 8.8 102 41-168 18-125 (749)
55 3qr0_A Phospholipase C-beta (P 99.2 2.1E-11 7.2E-16 146.7 11.7 113 40-189 649-771 (816)
56 2zkm_X 1-phosphatidylinositol- 99.2 1.9E-11 6.4E-16 148.0 10.9 112 40-188 677-798 (799)
57 3pfq_A PKC-B, PKC-beta, protei 99.2 2E-11 6.8E-16 146.8 10.5 107 38-171 169-282 (674)
58 3ohm_B 1-phosphatidylinositol- 99.2 3.1E-11 1.1E-15 146.0 10.2 112 41-189 725-845 (885)
59 1xdp_A Polyphosphate kinase; P 99.1 9.7E-11 3.3E-15 138.6 10.2 118 547-743 350-479 (687)
60 4gel_A Mitochondrial cardiolip 99.1 2E-10 6.9E-15 118.4 9.1 134 544-743 58-194 (220)
61 1yrk_A NPKC-delta, protein kin 99.0 1.9E-09 6.5E-14 98.3 13.2 90 87-188 26-124 (126)
62 2enj_A NPKC-theta, protein kin 99.0 1.2E-09 4E-14 101.0 11.5 90 87-188 31-129 (138)
63 3hsi_A Phosphatidylserine synt 98.8 7.5E-09 2.6E-13 117.9 11.3 124 544-727 37-165 (458)
64 1v0w_A Phospholipase D; hydrol 98.6 9.2E-08 3.2E-12 110.9 9.3 137 543-742 65-208 (506)
65 2o8r_A Polyphosphate kinase; s 98.1 4.6E-06 1.6E-10 98.2 10.2 119 546-743 354-486 (705)
66 3qph_A TRMB, A global transcri 95.6 0.0094 3.2E-07 65.0 5.4 35 706-743 192-230 (342)
67 3qph_A TRMB, A global transcri 95.3 0.026 8.7E-07 61.6 7.6 47 250-307 119-165 (342)
68 2f5t_X Archaeal transcriptiona 94.4 0.049 1.7E-06 55.9 6.2 50 250-310 10-59 (233)
69 2wxf_A Phosphatidylinositol-4, 86.3 2.2 7.5E-05 52.2 10.5 72 38-138 214-294 (940)
70 2c1l_A Restriction endonucleas 85.3 1.5 5.1E-05 44.3 6.8 40 701-742 103-145 (358)
71 3hhm_A Phosphatidylinositol-4, 83.1 2.6 9E-05 52.0 9.1 88 38-153 352-453 (1091)
72 2yrb_A Protein fantom; beta sa 78.2 5.5 0.00019 37.7 7.6 99 88-188 40-149 (156)
73 3l4c_A Dedicator of cytokinesi 78.0 4.1 0.00014 40.9 7.0 38 102-139 79-119 (220)
74 1e7u_A Phosphatidylinositol 3- 74.1 8.9 0.0003 47.0 9.9 51 88-138 238-296 (961)
75 2y3a_A Phosphatidylinositol-4, 68.4 3.7 0.00013 50.9 4.8 72 38-138 350-430 (1092)
76 2f5t_X Archaeal transcriptiona 41.1 44 0.0015 33.8 6.7 50 544-613 10-59 (233)
77 1q32_A TDP1P;, tyrosyl-DNA pho 29.0 16 0.00054 41.8 1.1 33 365-401 178-210 (544)
78 1jy1_A TDP1, tyrosyl-DNA phosp 25.1 39 0.0013 37.8 3.4 35 703-738 349-399 (464)
No 1
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=100.00 E-value=2.2e-36 Score=352.11 Aligned_cols=151 Identities=19% Similarity=0.229 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHhccceEEEEEEecCceeEEEeCCCCchHHHHHHHHhhhcC--CeEEEEEeCCCccccccccccccccCC
Q 003060 250 SCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEG--VRVLILAWDDPTSRSILGYKTDGIMST 327 (852)
Q Consensus 250 ~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a~rG--V~VriLvwD~~~s~~~~~~~~~~~~~~ 327 (852)
++|++|+++|++||++|+|++|.+ ++++..+..|.++|++||+|| |+||||+ |+.++.....
T Consensus 66 ~~~~~l~~~I~~Ak~~I~i~~y~~------~~~d~~g~~i~~aL~~aa~rGp~V~Vril~-D~~g~~~~~~--------- 129 (506)
T 1v0w_A 66 RLLAKMTENIGNATRTVDISTLAP------FPNGAFQDAIVAGLKESAAKGNKLKVRILV-GAAPVYHMNV--------- 129 (506)
T ss_dssp HHHHHHHHHHHTCSSEEEEEEESS------CCCHHHHHHHHHHHHHHHHTTCCEEEEEEE-ECCC--CCCC---------
T ss_pred HHHHHHHHHHHHhccEEEEEEeec------cCCChHHHHHHHHHHHHHhCCCCcEEEEEE-eCcccccccc---------
Confidence 579999999999999999999931 355556789999999999999 9999997 7654321100
Q ss_pred CcHHHHhhhcCCCe------EEEeccCCCCCCCcccccccccccccCcccEEEEecCCCCCcccEEEEEcccccCCCccC
Q 003060 328 NDEETRRFFKHSSV------QVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYD 401 (852)
Q Consensus 328 ~~~~~~~~~~~~~v------~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~r~D 401 (852)
......+.|+..|+ .+...+ |.. ....+.+||+|++|||++ +||+||+|+++++|.
T Consensus 130 ~~~~~~~~L~~~g~~~~~~~~~~~~~--------~~~--~~~~~~r~H~K~~ViD~~--------~a~~Gg~Nl~~d~y~ 191 (506)
T 1v0w_A 130 IPSKYRDELTAKLGKAAENITLNVAS--------MTT--SKTAFSWNHSKILVVDGQ--------SALTGGINSWKDDYL 191 (506)
T ss_dssp HHHHHHHHHHHHHGGGGGGEEEEEEE--------ECS--BTTTTBCBCCCEEEETTT--------EEEEESCCCCHHHHT
T ss_pred CCHHHHHHHHhcccceeecCcccccc--------ccc--cCCccccceeeEEEECCc--------EEEeeccccCccccc
Confidence 01223344444333 332110 000 001124899999999997 999999999876665
Q ss_pred CCCCCCCcccccccCCCCCCCCcCCCCCCCCCCCeeeccceeeChHHHHHHHHHHHHHhhhc
Q 003060 402 TPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTNFEERWLKAS 463 (852)
Q Consensus 402 t~~H~~~~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~ 463 (852)
+. ..+|||++++|+||+|.++...|.++|+...
T Consensus 192 ~~-----------------------------~~~~~D~~v~i~G~~v~~l~~~F~~~W~~~~ 224 (506)
T 1v0w_A 192 DT-----------------------------THPVSDVDLALTGPAAGSAGRYLDTLWTWTC 224 (506)
T ss_dssp SS-----------------------------SSCCBEEEEEEESHHHHHHHHHHHHHHHHHH
T ss_pred cC-----------------------------CCCceEEEEEEECHHHHHHHHHHHHHHhhhc
Confidence 31 1479999999999999999999999999764
No 2
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=100.00 E-value=6.9e-35 Score=332.61 Aligned_cols=355 Identities=15% Similarity=0.099 Sum_probs=213.0
Q ss_pred ccCceeEEeecccccCCCccceeccCCcccCchhHHHHHHHHHHhccceEEEEEEecCceeEEEeCCCCchHHHHHHHHh
Q 003060 217 RRGGKVTLYQDAHAHDGCLADLKLDGGVQFNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIK 296 (852)
Q Consensus 217 ~~g~~v~l~~dg~~~~~~~~~i~~~~g~~y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~ 296 (852)
..||.|+++.+|+ ++|++++++|++|+++|+|++| ++.+|+.+..|.++|.+|
T Consensus 24 ~~~n~v~~l~~g~--------------------~~~~~l~~~I~~A~~~I~i~~~-------~~~~d~~g~~l~~aL~~a 76 (458)
T 3hsi_A 24 LQAEQIEFLGSSA--------------------EFKTQIIELIRNAKKRIYVTAL-------YWQKDEAGQEILDEIYRV 76 (458)
T ss_dssp CCGGGEEECCCHH--------------------HHHHHHHHHHHTCSSEEEEEES-------CBCSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCHH--------------------HHHHHHHHHHHhcCCEEEEEEE-------EEecCcHHHHHHHHHHHH
Confidence 3589999999987 6899999999999999999999 666777788999999999
Q ss_pred hhc--CCeEEEEEeCCCc-cccccccccccccCCCcHHHHhhhcCCC--eEEE--ecc-CCCCCCCcccccccccccccC
Q 003060 297 SQE--GVRVLILAWDDPT-SRSILGYKTDGIMSTNDEETRRFFKHSS--VQVL--LCP-RSAGKGHSFVKKQEVGTIYTH 368 (852)
Q Consensus 297 a~r--GV~VriLvwD~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~v~--~~p-~~~~~~~~~~~~~~~~~~~~h 368 (852)
|+| ||+||||+ |+.. +....|.. . + .........|...| |+|. +++ +.. ....+.++
T Consensus 77 a~r~~GV~Vril~-D~~~~~r~~~g~~--~-~-~~~~~~~~~L~~~g~nv~v~~~~f~~p~~----------~~~~~~r~ 141 (458)
T 3hsi_A 77 KQENPHLDVKVLI-DWHRAQRNLLGAE--K-S-ATNADWYCEQRQTYQLPDDPNMFFGVPIN----------TREVFGVL 141 (458)
T ss_dssp HHHSTTCEEEEEE-ETTGGGSCCC---------CCHHHHHHHHHHHHTCTTCCCCEEEECSS----------SSGGGCCE
T ss_pred HhcCCCCEEEEEE-ECccccccccccc--c-c-cccHHHHHHHHhhCCCceEeeeecCCccc----------cccccCcc
Confidence 999 99999997 8732 11111100 0 0 00122333333333 6666 553 211 01245799
Q ss_pred cccEEEEecCCCCCcccEEEEEcccccCCCccCCCCCCCCcccccccCCCCCCCCcCCCCCCCCCCCeeeccceeeChHH
Q 003060 369 HQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAA 448 (852)
Q Consensus 369 HqK~vVVD~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa 448 (852)
|+|++|||++ + ++||+||.+.|+... .....|+| +.+.||.+
T Consensus 142 H~Ki~viD~~--------v-~~~G~Ni~d~y~~~~---------------------------~~~~~drd--~~i~g~~~ 183 (458)
T 3hsi_A 142 HVKGFVFDDT--------V-LYSGASINNVYLHQF---------------------------EKYRYDRY--QKITHAEL 183 (458)
T ss_dssp ECCEEEETTE--------E-EEESCCBSTTTTTCS---------------------------SCCEECCE--EEEECHHH
T ss_pred eeeEEEECCC--------E-EEEeeecCHHHhcCC---------------------------cccCcchh--hhhcCchH
Confidence 9999999995 7 556699999765421 01234777 44899999
Q ss_pred HHHHHHHH--HHHhhhcCCCCccccC-CC---Cchhhhhh-ccCcccccCcccCCCCCCCCCcccceeeeccCCccccCC
Q 003060 449 YDILTNFE--ERWLKASKPHGLQKLK-SS---NDDSLLKL-ERIPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSVKGF 521 (852)
Q Consensus 449 ~dl~~~F~--~rW~~~~~~~~~~~l~-~~---~~~~l~~~-~~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~ 521 (852)
.|....|. ..|+...-.. +...- .. +......+ +.++.. .... ......+...+|+....
T Consensus 184 ~D~~~~~~~~~~~~g~~v~~-l~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~--~~~~~~~~~~~~v~p~~-------- 250 (458)
T 3hsi_A 184 ADSMVNFINDYLLDFSAVYP-LDVTNRPRTKEIRGNIRAYRKDLAQN--GEYS--LKSAVKLPNVLSVSPLF-------- 250 (458)
T ss_dssp HHHHHHHHHHTTCCTTTCEE-SSSSCCCCGGGTHHHHHHHHHHHHHH--CCCC--CSSCBSSCSSCEEEEEE--------
T ss_pred HHHHHHHHHhhhhcCccchh-hHHHhcccchhhHHHHHHHHHhhhhc--cccc--ccccCCCCceEEEecCC--------
Confidence 99999984 4565432110 00000 00 00000000 000000 0000 00000001112332210
Q ss_pred CCCcccccccccccCcccchhhHHHHHHHHHHHhccceEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcC
Q 003060 522 PVEPRDATSMNLVCGKNVLIDMSIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRAN 601 (852)
Q Consensus 522 p~~p~~~~~~~~~~g~~~~~e~sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~ 601 (852)
.| +. .+..|..+|+++|.+|++.|||+||||+++. .+..+|..+ +.
T Consensus 251 --~~----------~~---~~~~i~~~~~~lI~~A~~~I~I~tpYf~p~~-----------------~~~~aL~~A--a~ 296 (458)
T 3hsi_A 251 --GL----------GA---SGNELNQVIEDLFLQVQKKLVICTPYFNFPR-----------------TLQHKIATL--LE 296 (458)
T ss_dssp --EE----------SS---SSCHHHHHHHHHHHTCSSEEEEECSSSCCCH-----------------HHHHHHHHH--HT
T ss_pred --CC----------CC---chhHHHHHHHHHHHhcccEEEEEEeccCCCH-----------------HHHHHHHHH--HH
Confidence 00 10 1246899999999999999999999999864 344445444 47
Q ss_pred CCceEEEEecCCCCCCCCChhhHHHHHHHHHH--HHHHHHH---HHHHHHHcC---CCCCcCCCCceeeeccCCccccCC
Q 003060 602 ERFAAYILIPMWPEGITTSPQIQRILYWQHKT--MQMMYET---IYKALVESG---LQNKYVPQDYLNFFCLGNREALDG 673 (852)
Q Consensus 602 ~gv~V~IvlP~~peg~~~~~~~~~i~~~~~~t--~~~~~~~---~~~~L~~~G---v~~~~~p~~y~~~~~l~~~~~~~~ 673 (852)
+||+|+||+|...........+++++.|.... .+...+. -++.|.++| ++++.
T Consensus 297 rGV~VrIi~~~~~and~y~~~~~~~~~~~~~~~lye~~~~~f~~~~~~l~~~G~i~V~i~~------------------- 357 (458)
T 3hsi_A 297 NGKRVEIIVGDKVANDFYIPPEQPFKMAGALPYLYESNLRRFCEKFETQIESGQLVVRLWR------------------- 357 (458)
T ss_dssp TTCEEEEEEECGGGSTTCCCTTSCCCGGGGHHHHHHHHHHHHHHHTHHHHHHTSEEEEEEC-------------------
T ss_pred CCCeEEEEECCccccCCccCCcchhhhhcchHHHHHHhhhhhHHHHHHHHhCCCeEEEEEe-------------------
Confidence 99999999998631110000011111111100 0000111 135677788 44321
Q ss_pred CCCCCCCCCCCCCchHHHhhccCeeeEEEEeeEEEEeceEEEEeccCCCCCCcCCCCCCceEEEeecCc
Q 003060 674 VDSSNAKDSTAANTPQALAKKNRRFQIYIHSKGMIVDDEYVIIGSANINQRSLEGTRDTEIAMGAYQPR 742 (852)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~ 742 (852)
+. ..++|+|+|||||++++|||+|||.||+. +|+|++++|++++
T Consensus 358 ~~-----------------------~~~lHaK~~vvD~~~~~vGS~N~d~RS~~--lN~E~~~~i~~~~ 401 (458)
T 3hsi_A 358 DG-----------------------DNTYHLKGVWVDDRYILLTGNNLNPRAWR--LDAENGLLIYDPQ 401 (458)
T ss_dssp BT-----------------------TBEECCCEEEETTTEEEEECCCCSHHHHH--TCEEEEEEEECTT
T ss_pred cC-----------------------CCceeEEEEEECCeEEEecCCCCCcchhh--hCceeEEEEeCCc
Confidence 00 14899999999999999999999999998 8999999999986
No 3
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=99.88 E-value=1.5e-22 Score=197.66 Aligned_cols=131 Identities=21% Similarity=0.309 Sum_probs=107.6
Q ss_pred CceeeeeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCC
Q 003060 33 SLKVLLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSES 112 (852)
Q Consensus 33 ~~~~~~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~n 112 (852)
...+++++|+|+|+|++|++|+++|..++.+ +|.+ ..|++||||+|++++++++||+++++++|
T Consensus 21 ~~~~~~~~g~L~V~VieA~~L~~~D~~~~~~--~f~~--------------~~g~sDPYv~v~l~~~~~~kT~v~~ktln 84 (157)
T 2fk9_A 21 SSGTMKFNGYLRVRIGEAVGLQPTRWSLRHS--LFKK--------------GHQLLDPYLTVSVDQVRVGQTSTKQKTNK 84 (157)
T ss_dssp ---CCCEEEEEEEEEEEEECCCCCHHHHHTT--TSSS--------------SCCCCCEEEEEEETTEEEEECCCCSSCSS
T ss_pred cchhccCccEEEEEEEEEECCCCcccccccc--cccc--------------CCCCCCeEEEEEECCEeeEEeeecCCCCC
Confidence 3456789999999999999999998532211 2211 14679999999999999899999999999
Q ss_pred CeeeeEEEEeecCCCcEEEEEEEecCCcC-CceeeeEEEeeeeecCC----CeeeeeeecccCCCCCCCCCceeeeeEEe
Q 003060 113 PVWMQHFNVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSG----DKIEGAFPILNSSRKPCKAGAVLSLSIQY 187 (852)
Q Consensus 113 P~WnE~F~~~v~~~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g----~~~~~w~~L~~~~~~~~~~~g~I~l~l~f 187 (852)
|+|||+|.|++. ....|.|+|||+|.++ +++||++.|+|+++..+ ...+.||+|.. .|+|++.++|
T Consensus 85 P~WNE~F~f~v~-~~~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--------~G~i~l~l~~ 155 (157)
T 2fk9_A 85 PTYNEEFCANVT-DGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--------EGKVFVVITL 155 (157)
T ss_dssp CEEEEEEEEEEE-EECEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--------SCEEEEEEEE
T ss_pred CccCcEEEEEcC-CCCEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--------CcEEEEEEEE
Confidence 999999999986 4578999999999988 88999999999999855 67899999932 3799999987
Q ss_pred e
Q 003060 188 T 188 (852)
Q Consensus 188 ~ 188 (852)
.
T Consensus 156 ~ 156 (157)
T 2fk9_A 156 T 156 (157)
T ss_dssp C
T ss_pred E
Confidence 3
No 4
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.87 E-value=6.6e-22 Score=233.56 Aligned_cols=273 Identities=14% Similarity=0.133 Sum_probs=179.2
Q ss_pred hHHHHHHHHHHhccc-----eEEEEEEecCceeEEEeCCCCchHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccc
Q 003060 250 SCWQDVYDAINQARR-----LIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGI 324 (852)
Q Consensus 250 ~~~~~l~~aI~~Ak~-----~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~ 324 (852)
+.|+.+++.|++|++ +|+|+.|.+. + ...+.++|++||++||+|+||+ |..+....
T Consensus 347 ~sf~~v~~~I~~A~~dp~v~~I~it~Y~~~-------~---d~~I~~AL~~AA~rGV~VrVLv-d~~a~~~~-------- 407 (687)
T 1xdp_A 347 HTFEHVLELLRQASFDPSVLAIKINIYRVA-------K---DSRIIDSMIHAAHNGKKVTVVV-ELQARFDE-------- 407 (687)
T ss_dssp BCTHHHHHHHHHHHHCTTEEEEEEEESSCC-------T---TCHHHHHHHHHHHTTCEEEEEE-CTTCSSTT--------
T ss_pred hhhhhHHHHHHHHhhCCcceEEEEEeeeec-------C---cHHHHHHHHHHHhcCCEEEEEE-CCCcccch--------
Confidence 568999999999997 9999888432 2 2789999999999999999997 87652110
Q ss_pred cCCCcHHHHhhhcCCCeEEEeccCCCCCCCcccccccccccccCcccEEEEecCCCCCcccEEEEEcccccCCCccCCCC
Q 003060 325 MSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPA 404 (852)
Q Consensus 325 ~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~r~Dt~~ 404 (852)
.....+.+.|..+||+|..+.+ .+++|+|++|||++..+ .-+..+|+||.|+....+
T Consensus 408 --~~n~~~~~~L~~aGV~V~~~~~----------------~~k~H~Ki~VID~re~~-~i~~~a~iGS~N~d~rs~---- 464 (687)
T 1xdp_A 408 --EANIHWAKRLTEAGVHVIFSAP----------------GLKIHAKLFLISRKENG-EVVRYAHIGTGNFNEKTA---- 464 (687)
T ss_dssp --TTTTTTTHHHHHHTCEEEECCT----------------TCEECCEEEEEEEEETT-EEEEEEEEESSCSCTTGG----
T ss_pred --hhHHHHHHHHHHCCCEEEEecC----------------CccccceEEEEEeccCC-eEEEEEEEeCCcCCcchh----
Confidence 0111234556778999977532 14799999999952111 001239999999866411
Q ss_pred CCCCcccccccCCCCCCCCcCCCCCCCCCCCeeeccceeeCh-HHHHHHHHHHHHHhhhcCCCCccccCCCCchhhhhhc
Q 003060 405 HPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGP-AAYDILTNFEERWLKASKPHGLQKLKSSNDDSLLKLE 483 (852)
Q Consensus 405 H~~~~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gp-aa~dl~~~F~~rW~~~~~~~~~~~l~~~~~~~l~~~~ 483 (852)
..|+|+++.+.|| +|.++...|...|....... +
T Consensus 465 -----------------------------~~n~D~~l~i~~~~i~~~l~~~F~~~~~~s~~~~--------~-------- 499 (687)
T 1xdp_A 465 -----------------------------RLYTDYSLLTADARITNEVRRVFNFIENPYRPVT--------F-------- 499 (687)
T ss_dssp -----------------------------GTEEEEEEEECCHHHHHHHHHHHHHHHCTTSCCC--------C--------
T ss_pred -----------------------------hhcceEEEEEeCHHHHHHHHHHHHHHHhhccccc--------h--------
Confidence 3589999999987 69999999999998643210 0
Q ss_pred cCcccccCcccCCCCCCCCCcccceeeeccCCccccCCCCCcccccccccccCcccchhhHHHHHHHHHHHhccc----e
Q 003060 484 RIPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSVKGFPVEPRDATSMNLVCGKNVLIDMSIHTAYVKAIRAAQH----F 559 (852)
Q Consensus 484 ~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~~g~~~~~e~sI~~ayl~aI~~A~~----~ 559 (852)
. +++.+ |.. ....+...+...|+.|++ +
T Consensus 500 -------------------~----~l~~s---------P~~----------------~~~~l~~~I~~ei~~A~~g~~~~ 531 (687)
T 1xdp_A 500 -------------------D----YLMVS---------PQN----------------SRRLLYEMVDREIANAQQGLPSG 531 (687)
T ss_dssp -------------------S----SCEEE---------TTS----------------HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred -------------------h----heeeC---------Cch----------------hhHHHHHHHHHHHHHHHcCCCCE
Confidence 0 00000 100 112345555666777886 8
Q ss_pred EEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 003060 560 IYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMWPEGITTSPQIQRILYWQHKTMQMMYE 639 (852)
Q Consensus 560 IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~peg~~~~~~~~~i~~~~~~t~~~~~~ 639 (852)
|+|.++|+ ++. .+..+|..| +++||+|.|++++...-.
T Consensus 532 I~i~~~~l-pD~-----------------~ii~AL~~A--a~rGV~VrLivrg~c~l~---------------------- 569 (687)
T 1xdp_A 532 ITLKLNNL-VDK-----------------GLVDRLYAA--SSSGVPVNLLVRGMCSLI---------------------- 569 (687)
T ss_dssp EEEEESCB-CCH-----------------HHHHHHHHH--HHTTCCEEEEESSCBCBC----------------------
T ss_pred EEEEeCCC-CCH-----------------HHHHHHHHH--HHCCCEEEEEEecccccC----------------------
Confidence 99999884 442 243444444 368999999996531000
Q ss_pred HHHHHHHHcCCCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchHHHhhccCeeeEEEEeeEEEE---eceEEEE
Q 003060 640 TIYKALVESGLQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQALAKKNRRFQIYIHSKGMIV---DDEYVII 716 (852)
Q Consensus 640 ~~~~~L~~~Gv~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIV---DD~~~iI 716 (852)
.|+... .+-+.+... + . ...=|+|+++. ||.+++|
T Consensus 570 --------pgvp~~---sdni~V~s~--------~---------------------~--r~Leh~rI~~f~~~dd~~~~I 607 (687)
T 1xdp_A 570 --------PNLEGI---SDNIRAISI--------V---------------------D--RYLEHDRVYIFENGGDKKVYL 607 (687)
T ss_dssp --------TTCTTT---STTEEEEEE--------C---------------------S--SSEECCCEEEECGGGSCEEEE
T ss_pred --------CCCCCC---CCCEEEEEe--------h---------------------h--HHhhCCeEEEEcCCCCCEEEE
Confidence 011100 010111000 0 0 01237888888 7899999
Q ss_pred eccCCCCCCcCCCCCCceEEEeecCcc
Q 003060 717 GSANINQRSLEGTRDTEIAMGAYQPRH 743 (852)
Q Consensus 717 GSANln~RSm~g~~DsEi~v~i~d~~~ 743 (852)
|||||+.|||. +|.|+++.|+|+++
T Consensus 608 GSAN~d~Rsl~--~n~Ev~~~I~d~~~ 632 (687)
T 1xdp_A 608 SSADWMTRNID--YRIEVATPLLDPRL 632 (687)
T ss_dssp ESCCBSHHHHH--SEEEEEEECCSHHH
T ss_pred EcCccchhhhh--hheeeeEEecCHHH
Confidence 99999999998 89999999999863
No 5
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=99.86 E-value=1.2e-21 Score=229.42 Aligned_cols=268 Identities=15% Similarity=0.169 Sum_probs=176.8
Q ss_pred hHHHHHHHHHHhccc-----eEEEEEEecCceeEEEeCCCCchHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccc
Q 003060 250 SCWQDVYDAINQARR-----LIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGI 324 (852)
Q Consensus 250 ~~~~~l~~aI~~Ak~-----~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~ 324 (852)
+.|+.++++|++|++ +|.++.| ++.++ ..|.++|++||++||+|+||+ | .++....
T Consensus 352 ~sf~~vi~~I~~A~~DP~V~sIk~tlY-------r~~~d---s~Iv~ALi~AA~rGv~V~vLv-e-l~arfde------- 412 (705)
T 2o8r_A 352 YTYDYVVRLLMEAAISPDVSEIRLTQY-------RVAEN---SSIISALEAAAQSGKKVSVFV-E-LKARFDE------- 412 (705)
T ss_dssp BCSHHHHHHHHHHHTCTTEEEEEEEES-------CCCSC---CHHHHHHHHHHHTTCEEEEEE-C-CCSCC---------
T ss_pred HhHHHHHHHHHHhccCCCceEEEEEEE-------EEcCC---HHHHHHHHHHHHCCCEEEEEE-e-CCCCcch-------
Confidence 579999999999999 9999998 44333 789999999999999999997 8 5543210
Q ss_pred cCCCcHHHHhhhcCCCeEEEeccCCCCCCCcccccccccccccCcccEEEEecC--CCCCcccEEEEEcccccCCCccCC
Q 003060 325 MSTNDEETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDAD--AGQFKRKIIAFVGGLDLCKGRYDT 402 (852)
Q Consensus 325 ~~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~--~~~~~~~~vafvGG~nl~~~r~Dt 402 (852)
..+..+.+.|+.+||+|.+.- .++++|+|++|||++ .+++- +..+++|.-|+.+.
T Consensus 413 --e~ni~wa~~Le~aGv~Vv~g~----------------~~lk~H~Ki~lIdrr~~~~g~~-~~y~~igtGN~n~~---- 469 (705)
T 2o8r_A 413 --ENNLRLSERMRRSGIRIVYSM----------------PGLKVHAKTALILYHTPAGERP-QGIALLSTGNFNET---- 469 (705)
T ss_dssp ----CHHHHHHHHHHTCEEEECC----------------TTCCBCCCEEEEEECCCSSSCC-CEEEEEESSCSSCC----
T ss_pred --hhhHHHHHHHHHCCCEEEEcc----------------CCCCceeEEEEEecccccCCce-eEEEeccccceeee----
Confidence 112356777889999997631 236899999999985 32211 11333332222211
Q ss_pred CCCCCCcccccccCCCCCCCCcCCCCCCCCCCCeeeccceeeCh-HHHHHHHHHHHHHhhhcCCCCccccCCCCchhhhh
Q 003060 403 PAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGP-AAYDILTNFEERWLKASKPHGLQKLKSSNDDSLLK 481 (852)
Q Consensus 403 ~~H~~~~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gp-aa~dl~~~F~~rW~~~~~~~~~~~l~~~~~~~l~~ 481 (852)
.-.-|.|+++...+| ++.|+...|...|.....
T Consensus 470 -----------------------------tariy~D~~l~t~~~~i~~dl~~vF~~~tg~~~~----------------- 503 (705)
T 2o8r_A 470 -----------------------------TARIYSDTTLMTANTDIVHDVYRLFRILDGDPEP----------------- 503 (705)
T ss_dssp -----------------------------CSSCEEEEEEEECCHHHHHHHHHHHHHHTTCCCC-----------------
T ss_pred -----------------------------EEEEEeeeeeeecChHHHHHHHHHHHHHhCCCCC-----------------
Confidence 012366777777664 679999999666542100
Q ss_pred hccCcccccCcccCCCCCCCCCcccceeeeccCCccccCCCCCcccccccccccCcccchhhHHHHHHHHHHHhccc---
Q 003060 482 LERIPEIVGMTEASYLSENDPEAWHAQVFRSIDSNSVKGFPVEPRDATSMNLVCGKNVLIDMSIHTAYVKAIRAAQH--- 558 (852)
Q Consensus 482 ~~~~p~~~~~~~~~~~~~~~~~~~~vQv~rs~~~~~~~~~p~~p~~~~~~~~~~g~~~~~e~sI~~ayl~aI~~A~~--- 558 (852)
..+ .|++-+ |.. ....|.+.+..+|.+|++
T Consensus 504 ---------------------~~~-~~l~~s---------P~~----------------~~~~i~~~i~~eI~~Ak~G~~ 536 (705)
T 2o8r_A 504 ---------------------ARF-SRLLVA---------RYN----------------MGEAITNLIEREIENVKRGKR 536 (705)
T ss_dssp ---------------------SCC-SSCEET---------TTT----------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred ---------------------CCc-eEEEEC---------Cch----------------HHHHHHHHHHHHHHHHhcCCC
Confidence 001 233221 111 134689999999999999
Q ss_pred -eEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCC----CCCCCCChhhHHHHHHHHHH
Q 003060 559 -FIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMW----PEGITTSPQIQRILYWQHKT 633 (852)
Q Consensus 559 -~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~----peg~~~~~~~~~i~~~~~~t 633 (852)
+|+|.++| +++. .+..+|..| +++||+|.|++.+. | |.+ .+
T Consensus 537 a~I~ik~n~-l~D~-----------------~ii~aL~~A--s~~GV~V~LIVRGiC~L~P-gv~--~s----------- 582 (705)
T 2o8r_A 537 GYMLLKMNG-LQDK-----------------NVITQLYRA--SEAGVEIDLIVRGICCLVP-DMP--QS----------- 582 (705)
T ss_dssp CEEEEEESC-BCCH-----------------HHHHHHHHH--HHTTCEEEEEESSCBCSCC-SSG--GG-----------
T ss_pred CEEEEEcCC-CCCH-----------------HHHHHHHHH--HHCCCeEEEEEccccccCC-CCC--CC-----------
Confidence 99999999 5542 344444444 36899999999332 1 000 00
Q ss_pred HHHHHHHHHHHHHHcCCCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchHHHhhccCeeeEEEEeeEEEE---e
Q 003060 634 MQMMYETIYKALVESGLQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQALAKKNRRFQIYIHSKGMIV---D 710 (852)
Q Consensus 634 ~~~~~~~~~~~L~~~Gv~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvHSKlmIV---D 710 (852)
..+.+. +++ . ...=|+|++++ |
T Consensus 583 --------------dni~V~-------Siv-----------g-----------------------r~Leh~RIy~f~~gd 607 (705)
T 2o8r_A 583 --------------RNIRVT-------RLV-----------D-----------------------MYLEHSRIWCFHNGG 607 (705)
T ss_dssp --------------TTEEEE-------ECC-----------S-----------------------SSEECCCEEEECGGG
T ss_pred --------------CCeEEE-------eeH-----------H-----------------------HHHhcCEEEEEECCC
Confidence 011110 000 0 01348888888 8
Q ss_pred ceEEEEeccCCCCCCcCCCCCCceEEEeecCcc
Q 003060 711 DEYVIIGSANINQRSLEGTRDTEIAMGAYQPRH 743 (852)
Q Consensus 711 D~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~ 743 (852)
|.+++||||||+.|||. ++.|+++.|+|+++
T Consensus 608 ~~~~~IGSAn~m~Rnl~--~r~Ev~~~i~d~~~ 638 (705)
T 2o8r_A 608 KEEVFISSADWMKRNLY--NRIETACPVLDPTL 638 (705)
T ss_dssp SCEEEEESCCBCHHHHH--TSBCEEEECCSHHH
T ss_pred CcEEEEeccccchhhhh--heeEEEEEEcCHHH
Confidence 99999999999999998 99999999999874
No 6
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=99.83 E-value=2.3e-20 Score=178.43 Aligned_cols=130 Identities=19% Similarity=0.329 Sum_probs=106.2
Q ss_pred eeeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeee
Q 003060 37 LLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWM 116 (852)
Q Consensus 37 ~~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~Wn 116 (852)
.+++|+|+|+|++|++|+++|..++.. |. ...+.+.+||||+|.+++.+++||+++.++.||+||
T Consensus 2 ~~~~g~L~v~v~~a~~L~~~d~~~~~~---~g------------~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~Wn 66 (136)
T 1gmi_A 2 VVFNGLLKIKICEAVSLKPTAWSLRDA---VG------------PRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66 (136)
T ss_dssp CCEEEEEEEEEEEEESCCCCHHHHCC----CC------------SSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEE
T ss_pred cccceEEEEEEEeCcCCCCcccccccc---cc------------cccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccC
Confidence 367899999999999999988643210 10 001235689999999999998999999999999999
Q ss_pred eEEEEeecCCCcEEEEEEEecCCcC-CceeeeEEEeeeeecCC--CeeeeeeecccCCCCCCCCCceeeeeEEeecc
Q 003060 117 QHFNVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSG--DKIEGAFPILNSSRKPCKAGAVLSLSIQYTPV 190 (852)
Q Consensus 117 E~F~~~v~~~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g--~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~p~ 190 (852)
|+|.|++... +.|.|+|||+|.++ +++||++.|+|+++..+ ...+.|++|. ..|+|++.++|.+.
T Consensus 67 E~f~f~v~~~-~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 67 DEFVTDVCNG-RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--------PEGKVYVIIDLSGS 134 (136)
T ss_dssp EEEEEEEEEE-CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB--------SSCEEEEEEEEEEE
T ss_pred CEEEEEecCC-CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcC--------CCeEEEEEEEEEec
Confidence 9999998654 78999999999887 88999999999999864 3468999983 23799999998763
No 7
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=99.82 E-value=7.8e-20 Score=173.93 Aligned_cols=121 Identities=21% Similarity=0.334 Sum_probs=105.9
Q ss_pred eeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeee
Q 003060 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQ 117 (852)
Q Consensus 38 ~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE 117 (852)
-..|.|+|+|++|++|+++|. .|.+||||+|.+++.+. ||++++++.||+|||
T Consensus 10 ~~~~~L~v~v~~a~~L~~~d~--------------------------~g~~dpyv~v~~~~~~~-kT~~~~~t~nP~wne 62 (133)
T 2ep6_A 10 KDVGILQVKVLKAADLLAADF--------------------------SGKSDPFCLLELGNDRL-QTHTVYKNLNPEWNK 62 (133)
T ss_dssp CCSEEEEEEEEEEESCCCSSS--------------------------SSCCCEEEEEEETTEEE-ECCCCSSCSSCCCCE
T ss_pred CCceEEEEEEEeeECCCCCCC--------------------------CCCcCeEEEEEECCEEE-EeeeecCCCCCcccc
Confidence 345999999999999998875 45699999999999877 999999999999999
Q ss_pred EEEEeecCCCcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEee
Q 003060 118 HFNVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (852)
Q Consensus 118 ~F~~~v~~~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~ 188 (852)
+|.|++.+....|.|+|||++..+ +++||++.|+|+++..|. +.|++|.+.+++. +..|+|++.++|.
T Consensus 63 ~f~f~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~--~~w~~L~~~~~~~-~~~G~i~l~i~~~ 131 (133)
T 2ep6_A 63 VFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQ-AFKGVIYLEMDLI 131 (133)
T ss_dssp EEEEEESCTTCEEEEEEEEEETTEEEEECCBCEEEGGGCCSSC--CEECCCBCSCTTS-CCSSEEEEEEEEE
T ss_pred EEEEEecCCCCEEEEEEEECCCCCCCCeeEEEEEEHHHccCCC--ceEEEeecCCCCC-ccceEEEEEEEEE
Confidence 999999877788999999999986 889999999999998664 5899998765443 4568999999885
No 8
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=99.82 E-value=3.3e-20 Score=177.11 Aligned_cols=123 Identities=21% Similarity=0.378 Sum_probs=107.5
Q ss_pred eceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeec-CCCCCeeee
Q 003060 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVIS-NSESPVWMQ 117 (852)
Q Consensus 39 l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~-~t~nP~WnE 117 (852)
..|.|+|+|++|++|+++|. .+.+||||+|.+++.+. ||++++ ++.||+|||
T Consensus 8 ~~~~L~v~v~~a~~L~~~d~--------------------------~g~~dpyv~v~~~~~~~-kT~~~~~~~~nP~Wne 60 (136)
T 1wfj_A 8 PHGTLEVVLVSAKGLEDADF--------------------------LNNMDPYVQLTCRTQDQ-KSNVAEGMGTTPEWNE 60 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCS--------------------------SCSSCCCEEEESSSCEE-ECCCCTTCCSSCEEEE
T ss_pred CcEEEEEEEEeccCCCCccc--------------------------CCCcCceEEEEECCccc-eeEeccCCCCCCccCc
Confidence 45999999999999998875 45689999999998877 999998 899999999
Q ss_pred EEEEeecCCCcEEEEEEEecCCcC-CceeeeEEEeeeeec-CCCeeeeeeecccCCCCCCCCCceeeeeEEeecccc
Q 003060 118 HFNVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLC-SGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTPVEN 192 (852)
Q Consensus 118 ~F~~~v~~~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~-~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~p~~~ 192 (852)
+|.|++......|.|.|||++.++ +++||++.|+|+++. .+...+.||+|. .++ +..|+|++.++|.|...
T Consensus 61 ~f~f~v~~~~~~l~~~V~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~~~---~~~G~i~l~l~~~p~~~ 133 (136)
T 1wfj_A 61 TFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV-KDE---EYKGEIWVALSFKPSGP 133 (136)
T ss_dssp EEEEEEESSCCEEEEEECCSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE-ETT---EEEEEEEEEEEEEECCS
T ss_pred EEEEEECCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEee-cCC---ccCEEEEEEEEEEeCCC
Confidence 999999876789999999999887 889999999999994 566678999997 344 34599999999998654
No 9
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.6e-19 Score=170.72 Aligned_cols=123 Identities=24% Similarity=0.447 Sum_probs=106.4
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEE
Q 003060 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHF 119 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F 119 (852)
.|.|+|+|++|++|+.+|. +.+||||+|.+.+.+. ||++++++.||+|||+|
T Consensus 6 ~g~L~v~v~~a~~L~~~~~---------------------------g~~dpyv~v~~~~~~~-kT~v~~~t~nP~wne~f 57 (140)
T 2dmh_A 6 SGMLRVIVESASNIPKTKF---------------------------GKPDPIVSVIFKDEKK-KTKKVDNELNPVWNEIL 57 (140)
T ss_dssp CCEEEEEEEEEESCCCCSS---------------------------SCCCEEEEEECSSCEE-ECCCCCSCSSCEEEEEE
T ss_pred CcEEEEEEEEeeCCCCCCC---------------------------CCCCeEEEEEECCEeE-EeeeecCCCCCccCcEE
Confidence 4899999999999998874 3489999999998875 99999999999999999
Q ss_pred EEeecCC----CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeee---cccCCCCCCCCCceeeeeEEeeccc
Q 003060 120 NVPVAHS----AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFP---ILNSSRKPCKAGAVLSLSIQYTPVE 191 (852)
Q Consensus 120 ~~~v~~~----~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~---L~~~~~~~~~~~g~I~l~l~f~p~~ 191 (852)
.|.+... ...|.|.|||++..+ +++||++.|+|+++..+...+.|++ |.+..++ +..|+|+++++|.|..
T Consensus 58 ~f~v~~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~--~~~G~l~l~~~~~p~~ 135 (140)
T 2dmh_A 58 EFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ--DTGATIDLVIGYDPPS 135 (140)
T ss_dssp EEECSSCCCCTTCEEEEEEEETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCC--EEEEEEEEEEEECCCB
T ss_pred EEEecccccCCCCEEEEEEEECCCCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCC--CCCCEEEEEEEEECCC
Confidence 9998643 478999999999987 7899999999999998888899988 7666554 3459999999998844
Q ss_pred c
Q 003060 192 N 192 (852)
Q Consensus 192 ~ 192 (852)
.
T Consensus 136 ~ 136 (140)
T 2dmh_A 136 G 136 (140)
T ss_dssp S
T ss_pred C
Confidence 3
No 10
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=99.80 E-value=8.9e-19 Score=169.71 Aligned_cols=120 Identities=25% Similarity=0.344 Sum_probs=103.6
Q ss_pred eceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeE
Q 003060 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQH 118 (852)
Q Consensus 39 l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~ 118 (852)
..|.|+|+|++|++|+++|. .+.+||||+|.+++.+. ||++++++.||+|||+
T Consensus 15 ~~~~L~V~v~~a~~L~~~d~--------------------------~g~~dpyv~v~~~~~~~-kT~~~~~t~nP~Wne~ 67 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAKDK--------------------------TGSSDPYVTVQVGKTKK-RTKTIYGNLNPVWEEN 67 (148)
T ss_dssp CCEEEEEEEEEEESCCCCST--------------------------TSCCCEEEEEEETTEEE-ECCCCCSCSSCEEEEE
T ss_pred cccEEEEEEEeeeCCCCCCC--------------------------CCCcCeEEEEEECCEEE-ECCccCCCCCCCcccE
Confidence 35999999999999999886 45699999999988776 9999999999999999
Q ss_pred EEEeecCCCcEEEEEEEecCCc-----------C-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEE
Q 003060 119 FNVPVAHSAAEVHFVVKDNDFV-----------G-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQ 186 (852)
Q Consensus 119 F~~~v~~~~~~l~~~V~D~d~~-----------~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~ 186 (852)
|.|.+......|.|+|||++.. + +++||++.|+|+++. ...+.|++|....++. +..|+|+++++
T Consensus 68 f~f~v~~~~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~--~~~~~w~~L~~~~~~~-~~~G~i~l~l~ 144 (148)
T 3kwu_A 68 FHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS--GEMDVWYNLDKRTDKS-AVSGAIRLHIS 144 (148)
T ss_dssp EEEEECSTTCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC--SEEEEEEECBCSSTTC-CCCCEEEEEEE
T ss_pred EEEEecCCCCEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHHCc--CCCCEEEEcccCCCCC-CCceEEEEEEE
Confidence 9999987778999999999985 4 899999999999983 5678999997544332 35689999998
Q ss_pred ee
Q 003060 187 YT 188 (852)
Q Consensus 187 f~ 188 (852)
|.
T Consensus 145 ~e 146 (148)
T 3kwu_A 145 VE 146 (148)
T ss_dssp EE
T ss_pred EE
Confidence 84
No 11
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=99.80 E-value=3.3e-19 Score=173.73 Aligned_cols=122 Identities=24% Similarity=0.335 Sum_probs=99.3
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC-----EEEeeeeeecCCCCCee
Q 003060 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG-----AVIGRTFVISNSESPVW 115 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~-----~~~~rT~vi~~t~nP~W 115 (852)
|.|+|+|++|++|+++|. .+.+||||+|.+.. ....||++++++.||+|
T Consensus 20 ~~L~V~v~~a~~L~~~d~--------------------------~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~w 73 (153)
T 3b7y_A 20 RIVRVRVIAGIGLAKKDI--------------------------LGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKW 73 (153)
T ss_dssp EEEEEEEEEEESCC---------------------------------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCC
T ss_pred cEEEEEEEEeeCCCCCCC--------------------------CCCCCcEEEEEEECCCCccceeeeCccccCCCCCCC
Confidence 899999999999998875 45589999999963 35569999999999999
Q ss_pred eeEEEEeecCCCcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCee------eeeeecccCCCCCCCCCceeeeeEEee
Q 003060 116 MQHFNVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKI------EGAFPILNSSRKPCKAGAVLSLSIQYT 188 (852)
Q Consensus 116 nE~F~~~v~~~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~------~~w~~L~~~~~~~~~~~g~I~l~l~f~ 188 (852)
||+|.|++......|.|.|||++..+ +++||++.|+|+++..+... ..||+|....++. +..|+|+++++|.
T Consensus 74 ne~f~f~v~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~l~l~~~ 152 (153)
T 3b7y_A 74 NEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYL 152 (153)
T ss_dssp CEEEEEEECTTTCEEEEEEEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTC-CCCSEEEEEEEEC
T ss_pred CCEEEEEecCCCCEEEEEEEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCC-CcceEEEEEEEEe
Confidence 99999999877788999999999987 88999999999999865432 5899996544332 4569999999997
Q ss_pred c
Q 003060 189 P 189 (852)
Q Consensus 189 p 189 (852)
|
T Consensus 153 P 153 (153)
T 3b7y_A 153 P 153 (153)
T ss_dssp C
T ss_pred C
Confidence 6
No 12
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=99.78 E-value=6.7e-19 Score=165.61 Aligned_cols=121 Identities=21% Similarity=0.304 Sum_probs=100.0
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeecCCCCCeeee
Q 003060 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--AVIGRTFVISNSESPVWMQ 117 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~--~~~~rT~vi~~t~nP~WnE 117 (852)
+|.|.|+|++|++|++++... ..+.+||||+|.+++ ....||++++++.||+|||
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d-----------------------~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne 58 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGD-----------------------MLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNE 58 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHH-----------------------HHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEE
T ss_pred CcEEEEEEEeeeCCCCCCccc-----------------------cCCCCCCEEEEEEccCCCceEEccccCCCCCCcccc
Confidence 489999999999999863100 035689999999985 2445999999999999999
Q ss_pred EEEEeecC-CCcEEEEEEEecCCcCCceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEeec
Q 003060 118 HFNVPVAH-SAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (852)
Q Consensus 118 ~F~~~v~~-~~~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~p 189 (852)
+|.|.+.. ....|.|.|||++..++++||++.|+|+++..|...+.|++|.. .+.+.|+|.++..|
T Consensus 59 ~f~f~v~~~~~~~l~i~V~d~d~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~------~~~g~i~~~le~~~ 125 (126)
T 1rlw_A 59 TFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQ------VTEMVLEMSLEVAS 125 (126)
T ss_dssp EEEEEECTTSCCEEEEEEEECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEETT------TEEEEEEEEEECCC
T ss_pred eEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHccCCCcEEEEEEcCC------CceEEEEEEEEeCC
Confidence 99999954 44789999999998889999999999999999999999999953 23377888777544
No 13
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=99.77 E-value=2.1e-18 Score=172.27 Aligned_cols=123 Identities=24% Similarity=0.346 Sum_probs=97.3
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC-----EEEeeeeeecCCCCCee
Q 003060 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG-----AVIGRTFVISNSESPVW 115 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~-----~~~~rT~vi~~t~nP~W 115 (852)
|.|+|+|++|++|+++|. .+.+||||+|.+.+ ....||+++++++||+|
T Consensus 8 g~L~V~v~~a~~L~~~d~--------------------------~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~W 61 (176)
T 3m7f_B 8 RVVRVKVIAGIGLAKKDI--------------------------LGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKW 61 (176)
T ss_dssp EEEEEEEEEEESCC---C--------------------------CCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEE
T ss_pred EEEEEEEEEeeCCCCcCC--------------------------CCCcCcEEEEEEECCCCCcccceeCceECCCCCCcc
Confidence 899999999999998876 45689999999964 14559999999999999
Q ss_pred eeEEEEeecCCCcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCee-e-----eeeecccCCCCCCCCCceeeeeEEee
Q 003060 116 MQHFNVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKI-E-----GAFPILNSSRKPCKAGAVLSLSIQYT 188 (852)
Q Consensus 116 nE~F~~~v~~~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~-~-----~w~~L~~~~~~~~~~~g~I~l~l~f~ 188 (852)
||+|.|.+......|.|.|||++.++ +++||++.|+|.++..+... + .||+|....++. +..|+|+|+++|.
T Consensus 62 ne~f~f~v~~~~~~L~~~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~l~~~ 140 (176)
T 3m7f_B 62 NEEILFRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKS-RVKGYLRLKMTYL 140 (176)
T ss_dssp EEEEEEEECTTTCEEEEEEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTC-CCCSEEEEEEEEC
T ss_pred cceEEEEEcCCCCEEEEEEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCC-ccCEEEEEEEEEE
Confidence 99999999877789999999999887 89999999999999865433 2 799996544332 3569999999999
Q ss_pred cc
Q 003060 189 PV 190 (852)
Q Consensus 189 p~ 190 (852)
|.
T Consensus 141 p~ 142 (176)
T 3m7f_B 141 PK 142 (176)
T ss_dssp C-
T ss_pred eC
Confidence 97
No 14
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=99.74 E-value=9.5e-18 Score=159.23 Aligned_cols=120 Identities=18% Similarity=0.264 Sum_probs=97.4
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC-EEEeeeeeecCCCCCeeeeEE
Q 003060 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG-AVIGRTFVISNSESPVWMQHF 119 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~-~~~~rT~vi~~t~nP~WnE~F 119 (852)
..|+|+|++|++|+++|. .|.+||||+|.++. ....||+++++++||+|||+|
T Consensus 5 ~~L~V~v~~a~~L~~~d~--------------------------~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f 58 (132)
T 3pyc_A 5 IKIRLTVLCAKNLAKKDF--------------------------FRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHY 58 (132)
T ss_dssp EEEEEEEEEEESCCCCST--------------------------TCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEE
T ss_pred EEEEEEEEEeECCCCCCC--------------------------CCCcCeEEEEEECCCCceEECCccCCCCCCCccCEE
Confidence 589999999999999886 45699999999975 455699999999999999999
Q ss_pred EEeecCCCcEEEEEEEecCCcC----CceeeeEEEeeeeec-CCCeeeeeeecccCCC-CCCCCCceeeeeEEe
Q 003060 120 NVPVAHSAAEVHFVVKDNDFVG----SQIMGAVGIPVEKLC-SGDKIEGAFPILNSSR-KPCKAGAVLSLSIQY 187 (852)
Q Consensus 120 ~~~v~~~~~~l~~~V~D~d~~~----~~~iG~~~i~l~~l~-~g~~~~~w~~L~~~~~-~~~~~~g~I~l~l~f 187 (852)
.|.+.... .|.|+|||++..+ +++||++.|+++++. .+.....|++|....+ ++.+..|+|++.+++
T Consensus 59 ~f~v~~~~-~l~~~v~d~d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 59 DLYVGKTD-SITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp EEEEETTC-CEEEEEEEGGGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred EEEeCCCC-EEEEEEEECCCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 99997554 5999999999876 689999999999883 2333457899976432 233457899998875
No 15
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=99.74 E-value=7e-18 Score=167.89 Aligned_cols=127 Identities=21% Similarity=0.308 Sum_probs=102.2
Q ss_pred eeeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeee
Q 003060 37 LLLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWM 116 (852)
Q Consensus 37 ~~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~Wn 116 (852)
....+.|+|+|++|++|++.+. .+.+||||+|.+++.+ .||+++++++||+||
T Consensus 32 ~~~~~~L~V~V~~A~~L~~~~~--------------------------~~~sDPYv~v~~~~~~-~kT~v~~~tlnP~Wn 84 (173)
T 2nq3_A 32 LTMKSQLQITVISAKLKENKKN--------------------------WFGPSPYVEVTVDGQS-KKTEKCNNTNSPKWK 84 (173)
T ss_dssp CSCCEEEEEEEEEEEECCCC----------------------------CCCCCEEEEEEETTEE-EECCCCSSCSSCEEE
T ss_pred cCCceEEEEEEEEeECCCCccc--------------------------CCCCCeEEEEEECCEE-eEccccCCCCCCeEC
Confidence 3456899999999999994432 1238999999999844 599999999999999
Q ss_pred eEEEEeecCCCcEEEEEEEecCCcC-CceeeeEEEeeeeecCCC-----eeeeeeecccCCCCCCCCCceeeeeEEeecc
Q 003060 117 QHFNVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGD-----KIEGAFPILNSSRKPCKAGAVLSLSIQYTPV 190 (852)
Q Consensus 117 E~F~~~v~~~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~-----~~~~w~~L~~~~~~~~~~~g~I~l~l~f~p~ 190 (852)
|+|.|.+. ..+.|.|.|||++.++ +++||++.|+|+++..+. ..+.|++|...++. .+..|+|.+.+.+.+.
T Consensus 85 e~f~f~v~-~~~~L~~~V~D~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~-~~~~G~L~v~l~~l~~ 162 (173)
T 2nq3_A 85 QPLTVIVT-PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEP-TETIGDLSICLDGLQL 162 (173)
T ss_dssp EEEEEEEC-TTCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCT-TSEEEEEEEEEESEEC
T ss_pred CEEEEEeC-CCCEEEEEEEECCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCC-CcccEEEEEEEeeeec
Confidence 99999995 5789999999999987 789999999999987422 23679999765332 2456999999999876
Q ss_pred cc
Q 003060 191 EN 192 (852)
Q Consensus 191 ~~ 192 (852)
..
T Consensus 163 ~~ 164 (173)
T 2nq3_A 163 ES 164 (173)
T ss_dssp C-
T ss_pred ch
Confidence 43
No 16
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=99.72 E-value=2.7e-17 Score=156.73 Aligned_cols=105 Identities=14% Similarity=0.260 Sum_probs=89.7
Q ss_pred eeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC----CEEEeeeeeecCCCCC
Q 003060 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC----GAVIGRTFVISNSESP 113 (852)
Q Consensus 38 ~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~----~~~~~rT~vi~~t~nP 113 (852)
...|.|.|+|++|++|+. +. .+.+||||+|.+. .....||++++++.||
T Consensus 17 ~~~~~L~V~V~~a~~L~~-~~--------------------------~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP 69 (134)
T 2b3r_A 17 YRNGTLFIMVMHIKDLVT-ED--------------------------GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNP 69 (134)
T ss_dssp EETTEEEEEEEEEECCCC-TT--------------------------SCCCCEEEEEEEESCSSSCCCEECCCCCSCSSC
T ss_pred ecCCEEEEEEEEeeCCCC-CC--------------------------CCCCCeEEEEEEEcCCCCCceecCCcCcCCCCC
Confidence 345899999999999995 43 4569999999992 2344599999999999
Q ss_pred eeeeEEEEe-ecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeeccc
Q 003060 114 VWMQHFNVP-VAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILN 169 (852)
Q Consensus 114 ~WnE~F~~~-v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~ 169 (852)
+|||+|.|+ +... ...|.|+|||++.++ +++||++.|+|+++..+...+.||+|.+
T Consensus 70 ~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~ 130 (134)
T 2b3r_A 70 TFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTA 130 (134)
T ss_dssp EEEEEEEEESCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC
T ss_pred CCccEEEECCcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCC
Confidence 999999999 7542 368999999999987 7899999999999998888999999964
No 17
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.71 E-value=3.1e-17 Score=159.68 Aligned_cols=105 Identities=27% Similarity=0.319 Sum_probs=91.5
Q ss_pred eceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeecCCCCCeee
Q 003060 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAVIGRTFVISNSESPVWM 116 (852)
Q Consensus 39 l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~~~~~rT~vi~~t~nP~Wn 116 (852)
..+.|.|+|++|++|+++|. .+.+||||+|.+. +....||++++++.||+||
T Consensus 40 ~~~~L~V~v~~a~~L~~~d~--------------------------~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wn 93 (152)
T 1rsy_A 40 QNNQLLVGIIQAAELPALDM--------------------------GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 93 (152)
T ss_dssp TTTEEEEEEEEEESCCCCST--------------------------TSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEE
T ss_pred CCCEEEEEEEEeECCCCccC--------------------------CCCcCeEEEEEEEcCCCceEeccccCCCCCCcCc
Confidence 35899999999999998875 4568999999993 2334599999999999999
Q ss_pred eEEEEeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeeccc
Q 003060 117 QHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILN 169 (852)
Q Consensus 117 E~F~~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~ 169 (852)
|+|.|.+... ...|.|+|||++.++ +++||++.|+|.++..+...+.|++|.+
T Consensus 94 e~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~ 150 (152)
T 1rsy_A 94 EQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150 (152)
T ss_dssp EEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred ccEEEeecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence 9999998643 478999999999987 8899999999999988888999999964
No 18
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=99.70 E-value=1.5e-17 Score=162.42 Aligned_cols=103 Identities=17% Similarity=0.282 Sum_probs=89.3
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC---E--EEeeeeeecCCCCCe
Q 003060 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG---A--VIGRTFVISNSESPV 114 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~---~--~~~rT~vi~~t~nP~ 114 (852)
.|.|.|+|++|++|+++|. .|.+||||+|.+.. . ...||+++++++||+
T Consensus 42 ~~~L~V~Vi~a~~L~~~d~--------------------------~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~ 95 (155)
T 2z0u_A 42 NKQFAILIIQLSNLSALLQ--------------------------QQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLV 95 (155)
T ss_dssp TTEEEEEEEEEECGGGTCC--------------------------SCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEE
T ss_pred CCEEEEEEEEccCcCCccc--------------------------CCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCc
Confidence 4799999999999998885 56699999999954 2 245999999999999
Q ss_pred eeeEEEEeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeec-CCCeeeeeeecc
Q 003060 115 WMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLC-SGDKIEGAFPIL 168 (852)
Q Consensus 115 WnE~F~~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~-~g~~~~~w~~L~ 168 (852)
|||+|.|++... ...|.|+|||+|..+ +++||++.|+|+++. .+...++||+|+
T Consensus 96 wnE~F~f~v~~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~ 154 (155)
T 2z0u_A 96 FNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL 154 (155)
T ss_dssp EEEEEEEECCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred cccEEEEEcCHHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence 999999998653 367999999999987 889999999999995 467789999985
No 19
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=99.69 E-value=4e-17 Score=157.04 Aligned_cols=104 Identities=27% Similarity=0.319 Sum_probs=90.5
Q ss_pred eceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeecCCCCCeee
Q 003060 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAVIGRTFVISNSESPVWM 116 (852)
Q Consensus 39 l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~~~~~rT~vi~~t~nP~Wn 116 (852)
..|.|.|+|++|++|+.+|. .+.+||||+|.+. +....||++++++.||+||
T Consensus 32 ~~~~L~v~v~~a~~L~~~d~--------------------------~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wn 85 (143)
T 3f04_A 32 QNNQLLVGIIQAAELPALDM--------------------------GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 85 (143)
T ss_dssp TTTEEEEEEEEEECCCCBGG--------------------------GBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEE
T ss_pred CCCEEEEEEEEecCCCCCCC--------------------------CCCcCcEEEEEEECCCCccEECccCcCCCCCcCc
Confidence 45789999999999998875 3458999999992 3345599999999999999
Q ss_pred eEEEEeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecc
Q 003060 117 QHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (852)
Q Consensus 117 E~F~~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 168 (852)
|+|.|.+... ...|.|+|||++.++ +++||++.|+|+++..+...+.|++|.
T Consensus 86 e~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 141 (143)
T 3f04_A 86 EQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp EEEEECCCHHHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred CeEEEeecHhhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECc
Confidence 9999998643 268999999999987 889999999999999888899999994
No 20
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=8.4e-17 Score=154.47 Aligned_cols=105 Identities=23% Similarity=0.233 Sum_probs=90.5
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeecCCCCCeeee
Q 003060 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAVIGRTFVISNSESPVWMQ 117 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~~~~~rT~vi~~t~nP~WnE 117 (852)
.+.|+|+|++|++|+++|. .+.+||||+|.+. +....||++++++.||+|||
T Consensus 25 ~~~L~v~v~~a~~L~~~d~--------------------------~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne 78 (141)
T 2d8k_A 25 ESTLTVKIMKAQELPAKDF--------------------------SGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNE 78 (141)
T ss_dssp SCCEEEEEEEEESCCCCSS--------------------------SSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCE
T ss_pred CCEEEEEEEEeECCCCCCC--------------------------CCCCCcEEEEEEECCCCccEeCceEcCCCCCcccc
Confidence 5889999999999999875 4568999999994 23345999999999999999
Q ss_pred EEEEeecC----CCcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccC
Q 003060 118 HFNVPVAH----SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNS 170 (852)
Q Consensus 118 ~F~~~v~~----~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~ 170 (852)
+|.|.+.. ....|.|+|||++.++ +++||++.|+|+++..+...+.|++|...
T Consensus 79 ~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 136 (141)
T 2d8k_A 79 TFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS 136 (141)
T ss_dssp EEEECSCCHHHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred EEEECccCHHHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence 99998532 2468999999999987 88999999999999988888999999653
No 21
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.69 E-value=6.6e-17 Score=156.78 Aligned_cols=105 Identities=27% Similarity=0.410 Sum_probs=90.8
Q ss_pred eeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCC
Q 003060 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESP 113 (852)
Q Consensus 38 ~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~----~~~~rT~vi~~t~nP 113 (852)
...|.|.|+|++|++|+.+|. .+.+||||+|.+.. ....||++++++.||
T Consensus 28 ~~~~~L~v~v~~a~~L~~~d~--------------------------~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP 81 (149)
T 1a25_A 28 IDREVLIVVVRDAKNLVPMDP--------------------------NGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNP 81 (149)
T ss_dssp ESSSEEEEEEEEEESCCCCST--------------------------TSCCCEEEEEEEESCTTCSSCEECCCCSSCSSC
T ss_pred ecCCEEEEEEEEeeCCCCCCC--------------------------CCCcCeEEEEEEECCCCCcceEecceeCCCCCC
Confidence 346899999999999999875 45689999999963 344599999999999
Q ss_pred eeeeEEEEeecCC--CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeeccc
Q 003060 114 VWMQHFNVPVAHS--AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILN 169 (852)
Q Consensus 114 ~WnE~F~~~v~~~--~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~ 169 (852)
+|||+|.|++... ...|.|+|||++..+ +++||++.|+|.++..+ ..+.||+|.+
T Consensus 82 ~wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~ 139 (149)
T 1a25_A 82 EWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLS 139 (149)
T ss_dssp EEEEEEEEECCSGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBC
T ss_pred cCCcEEEEEeccccCCCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccC
Confidence 9999999998754 368999999999986 88999999999999866 4789999965
No 22
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=99.69 E-value=5.4e-17 Score=161.26 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=92.5
Q ss_pred eceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--E--EEeeeeeecCCCCCe
Q 003060 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--A--VIGRTFVISNSESPV 114 (852)
Q Consensus 39 l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~--~--~~~rT~vi~~t~nP~ 114 (852)
..|.|.|+|++|++|+++|.. .+.+||||+|.+.. . ...||++++++.||+
T Consensus 28 ~~~~L~V~v~~a~~L~~~d~~-------------------------~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~ 82 (171)
T 2q3x_A 28 KKGQLEVEVIRARSLTQKPGS-------------------------KSTPAPYVKVYLLENGACIAKKKTRIARKTLDPL 82 (171)
T ss_dssp ETTEEEEEEEEEESCCCCC----------------------------CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCE
T ss_pred CCCEEEEEEEEeeCCCCCCcC-------------------------CCCCCceEEEEEECCCccccceeCccCCCCCCCC
Confidence 568999999999999998731 35689999999953 2 356999999999999
Q ss_pred eeeEEEEeecCCCcEEEEEEE-ecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccC
Q 003060 115 WMQHFNVPVAHSAAEVHFVVK-DNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNS 170 (852)
Q Consensus 115 WnE~F~~~v~~~~~~l~~~V~-D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~ 170 (852)
|||+|.|.+......|.|+|| |+|.++ +++||++.|+|+++..+...+.||+|...
T Consensus 83 wne~f~f~v~~~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~ 140 (171)
T 2q3x_A 83 YQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP 140 (171)
T ss_dssp EEEEEECSSCCTTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred CCcEEEEEecCCCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence 999999999777788999999 999887 78999999999999878889999999653
No 23
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=99.69 E-value=2.9e-17 Score=159.12 Aligned_cols=108 Identities=19% Similarity=0.311 Sum_probs=90.5
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCee
Q 003060 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVW 115 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~----~~~~rT~vi~~t~nP~W 115 (852)
.|.|.|+|++|++|+.+|.. .+.+||||+|.+.. ....||++++++.||+|
T Consensus 22 ~~~L~V~v~~a~~L~~~d~~-------------------------~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~w 76 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYADEA-------------------------KKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLY 76 (148)
T ss_dssp TTEEEEEEEEEESCCCSBTT-------------------------TTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEE
T ss_pred CCEEEEEEEEecCCCCcccC-------------------------CCCCCeEEEEEEEcCCcccCccccccCCCCCCCcE
Confidence 48999999999999988731 45689999999952 22459999999999999
Q ss_pred eeEEEEeecCCC---cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCC
Q 003060 116 MQHFNVPVAHSA---AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSR 172 (852)
Q Consensus 116 nE~F~~~v~~~~---~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~ 172 (852)
||+|.|++.... ..|.|+|||++.++ +++||++.|+|.++..+...+.||+|....+
T Consensus 77 ne~f~f~v~~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~~ 137 (148)
T 3fdw_A 77 DETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKIS 137 (148)
T ss_dssp EEEEEEECCSTTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC--
T ss_pred eeEEEEEeChhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCccc
Confidence 999999987643 56999999999887 8899999999999987777889999976544
No 24
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=99.69 E-value=7.1e-17 Score=153.92 Aligned_cols=105 Identities=27% Similarity=0.391 Sum_probs=90.2
Q ss_pred eceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC----CEEEeeeeeecCCCCCe
Q 003060 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC----GAVIGRTFVISNSESPV 114 (852)
Q Consensus 39 l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~----~~~~~rT~vi~~t~nP~ 114 (852)
..|.|.|+|++|++|+++|. .+.+||||+|.+. +....||++++++.||+
T Consensus 14 ~~~~L~v~v~~a~~L~~~d~--------------------------~~~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~ 67 (137)
T 3rdl_A 14 TDEKLHVTVRDAKNLIPMDP--------------------------NGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQ 67 (137)
T ss_dssp ETTEEEEEEEEEESCCCCST--------------------------TSCCCEEEEEEEECCTTCCCCEECCCCCSCSSCE
T ss_pred cCCEEEEEEEEeeCCCCCCC--------------------------CCCCCeeEEEEEEcCCCCCeeecCceEcCCCCCC
Confidence 46899999999999999875 4568999999993 33445999999999999
Q ss_pred eeeEEEEeecCCC--cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccC
Q 003060 115 WMQHFNVPVAHSA--AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNS 170 (852)
Q Consensus 115 WnE~F~~~v~~~~--~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~ 170 (852)
|||+|.|++.... ..|.|+|||++..+ +++||++.|+|+++..+. .+.||+|.+.
T Consensus 68 wne~f~f~~~~~~~~~~l~i~v~d~d~~~~~~~iG~~~i~l~~l~~~~-~~~W~~L~~~ 125 (137)
T 3rdl_A 68 WNESFTFKLKPSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMP-ASGWYKLLNQ 125 (137)
T ss_dssp EEEEEEEECCGGGGGCEEEEEEEECCSSSCCEEEEEEEEEHHHHHHSC-EEEEEECBCH
T ss_pred cccEEEEEcCchhcCCEEEEEEEECCCCCCCceEEEEEEeHHHhccCc-cCceEECcCc
Confidence 9999999986433 57999999999887 889999999999998655 8899999753
No 25
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=99.68 E-value=3.6e-17 Score=159.32 Aligned_cols=109 Identities=22% Similarity=0.306 Sum_probs=88.1
Q ss_pred eceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEE--CCEE--EeeeeeecCCCCCe
Q 003060 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSI--CGAV--IGRTFVISNSESPV 114 (852)
Q Consensus 39 l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l--~~~~--~~rT~vi~~t~nP~ 114 (852)
..|.|.|+|++|++|+.+|. .+.+||||+|.+ ++.+ ..||+++++++||+
T Consensus 28 ~~~~L~v~v~~a~~L~~~d~--------------------------~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~ 81 (153)
T 1w15_A 28 TTNTLTVVVLKARHLPKSDV--------------------------SGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAV 81 (153)
T ss_dssp TTTEEEEEEEEEESCC--------------------------------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEE
T ss_pred CCCEEEEEEEEeECCCCcCC--------------------------CCCCCeEEEEEEEeCCeEeceEecCcccCCCCCe
Confidence 35799999999999998875 456899999999 5543 45999999999999
Q ss_pred eeeEEEEeecCCC---cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCC
Q 003060 115 WMQHFNVPVAHSA---AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (852)
Q Consensus 115 WnE~F~~~v~~~~---~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~ 175 (852)
|||+|.|++.... ..|.|+|||++.++ +++||++.|++++ .+...++|++|+...+++.
T Consensus 82 wne~f~f~v~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~p~~~~ 144 (153)
T 1w15_A 82 FNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATA--EGSGGGHWKEICDFPRRQI 144 (153)
T ss_dssp EEEEEEEECCSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHHHSTTCCE
T ss_pred ecceEEEECCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC--CchHHHHHHHHHhCCCCee
Confidence 9999999987643 67999999999887 8899999999987 4566788999988666654
No 26
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.68 E-value=2.1e-17 Score=158.71 Aligned_cols=107 Identities=25% Similarity=0.290 Sum_probs=91.5
Q ss_pred eeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCE-------------EEeee
Q 003060 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGA-------------VIGRT 104 (852)
Q Consensus 38 ~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~-------------~~~rT 104 (852)
...|.|.|+|++|++|+++|. .|.+||||+|.+... ...||
T Consensus 15 y~~~~L~V~v~~a~~L~~~d~--------------------------~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT 68 (142)
T 1rh8_A 15 YDLGNLIIHILQARNLVPRDN--------------------------NGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRT 68 (142)
T ss_dssp EETTEEEEEEEEEESCCCCSS--------------------------SSCSCCEEEEEETTSSCCCEECCCCCHHHHTTT
T ss_pred EcCCEEEEEEEEecCCCCCCC--------------------------CCCCCceEEEEEecCCCcccccccccccceeec
Confidence 346899999999999999885 456999999999753 24699
Q ss_pred eeecCCCCCeeeeEEEEe-ecC---CCcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccC
Q 003060 105 FVISNSESPVWMQHFNVP-VAH---SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNS 170 (852)
Q Consensus 105 ~vi~~t~nP~WnE~F~~~-v~~---~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~ 170 (852)
+++++++||+|||+|.|+ +.. ....|.|.|||++.++ +++||++.|+|+++..+...+.||+|...
T Consensus 69 ~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~ 139 (142)
T 1rh8_A 69 KYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139 (142)
T ss_dssp TTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred cccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCcc
Confidence 999999999999999997 542 3468999999999987 88999999999999877778899999654
No 27
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=99.68 E-value=1.1e-16 Score=151.09 Aligned_cols=101 Identities=22% Similarity=0.291 Sum_probs=82.6
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC----CEEEeeeeeecCCCCCee
Q 003060 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC----GAVIGRTFVISNSESPVW 115 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~----~~~~~rT~vi~~t~nP~W 115 (852)
.|.|.|+|++|++|+++|. .+.+||||+|.+. +....||++++++.||+|
T Consensus 17 ~~~L~v~v~~a~~L~~~d~--------------------------~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~w 70 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSRED--------------------------GRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKW 70 (129)
T ss_dssp TTEEEEEEEEEESCCCCTT--------------------------SCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEE
T ss_pred CCEEEEEEEEeeCCCCCCC--------------------------CCCCCCEEEEEEecCCCCCcceecccccCCCCCcc
Confidence 3789999999999998875 4568999999992 234459999999999999
Q ss_pred eeEEEEeecC----CCcEEEEEEEecCCcC---CceeeeEEEeeeeecCCCeeeeeeec
Q 003060 116 MQHFNVPVAH----SAAEVHFVVKDNDFVG---SQIMGAVGIPVEKLCSGDKIEGAFPI 167 (852)
Q Consensus 116 nE~F~~~v~~----~~~~l~~~V~D~d~~~---~~~iG~~~i~l~~l~~g~~~~~w~~L 167 (852)
||+|.|++.+ ....|.|+|||++..+ +++||++.|+|+++.... .+.||+|
T Consensus 71 ne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 71 NQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp EEEEEECSCCGGGGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred ccEEEEccCCHHHhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 9999999533 2368999999999887 789999999999988544 7899998
No 28
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=99.68 E-value=2.4e-17 Score=157.33 Aligned_cols=108 Identities=19% Similarity=0.316 Sum_probs=91.6
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCee
Q 003060 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVW 115 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~----~~~~rT~vi~~t~nP~W 115 (852)
.|.|.|+|++|++|+.+|. .+.+||||+|.+.. ....||++++++.||+|
T Consensus 15 ~~~L~v~v~~a~~L~~~d~--------------------------~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~w 68 (138)
T 3n5a_A 15 ANSIIVNIIKARNLKAMDI--------------------------GGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIF 68 (138)
T ss_dssp TTEEEEEEEEEESCCCCBT--------------------------TTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEE
T ss_pred CCeEEEEEEEeeCCCCcCC--------------------------CCCcCeEEEEEEEeCCCccceEeCccccCCCCCcC
Confidence 3889999999999998875 45689999999953 24569999999999999
Q ss_pred eeEEEEeecCCC---cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCC
Q 003060 116 MQHFNVPVAHSA---AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (852)
Q Consensus 116 nE~F~~~v~~~~---~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~ 175 (852)
||+|.|.+.... ..|.|+|+|++.++ +++||++.|++.++. ...++|++|+...+++.
T Consensus 69 ne~f~f~v~~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~--~~~~~W~~l~~~~~~~~ 130 (138)
T 3n5a_A 69 NESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP--GEVKHWKDMIARPRQPV 130 (138)
T ss_dssp EEEEEEECCGGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH--HHHHHHHHHHHSTTCCE
T ss_pred cceEEEECChhhcCceEEEEEEEECCCCCCCcEEEEEEEccccCC--hHHHHHHHHHhCCCCeE
Confidence 999999986554 57999999999887 889999999998743 45678999988777655
No 29
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.67 E-value=2.8e-16 Score=168.83 Aligned_cols=127 Identities=24% Similarity=0.328 Sum_probs=106.9
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeecCCCCCeeee
Q 003060 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--AVIGRTFVISNSESPVWMQ 117 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~--~~~~rT~vi~~t~nP~WnE 117 (852)
.|.|.|+|++|++|+++|. .+.+||||+|.+.. ....||+++++++||+|||
T Consensus 18 ~~~L~v~v~~a~~L~~~d~--------------------------~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne 71 (284)
T 2r83_A 18 NNQLLVGIIQAAELPALDM--------------------------GGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNE 71 (284)
T ss_dssp TTEEEEEEEEEECCCCCSS--------------------------SSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEE
T ss_pred CCEEEEEEEEeeCCCCCCC--------------------------CCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCc
Confidence 5899999999999999885 45699999999953 2345999999999999999
Q ss_pred EEEEeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEeecccc
Q 003060 118 HFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTPVEN 192 (852)
Q Consensus 118 ~F~~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~p~~~ 192 (852)
+|.|.+... ...|.|.|+|.+.++ +++||++.|+|.++..+...+.|++|....+......|+|++.++|.|...
T Consensus 72 ~f~f~v~~~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~~ 150 (284)
T 2r83_A 72 QFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAG 150 (284)
T ss_dssp EEEECCCGGGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETTTT
T ss_pred eEEEEechHHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecCcCC
Confidence 999998653 368999999999887 899999999999999888899999997654332245689999999987543
No 30
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=153.56 Aligned_cols=106 Identities=20% Similarity=0.233 Sum_probs=89.6
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CE--EEeeeeeecCCCCCee
Q 003060 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GA--VIGRTFVISNSESPVW 115 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~~--~~~rT~vi~~t~nP~W 115 (852)
.|.|.|+|++|++|+++|. .+ +||||+|.+. +. ...||++++++.||+|
T Consensus 23 ~~~L~v~v~~a~~L~~~d~--------------------------~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~w 75 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAFSE--------------------------DG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVF 75 (142)
T ss_dssp TTEEEEEEEEEECCCCSST--------------------------TC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEE
T ss_pred CCEEEEEEEEeECCCCCCC--------------------------CC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCc
Confidence 4789999999999999875 56 8999999993 22 3459999999999999
Q ss_pred eeEEEEeecCC---CcEEEEEEEecCCcC---CceeeeEEEeeeeecCCCeeeeeeecccCCC
Q 003060 116 MQHFNVPVAHS---AAEVHFVVKDNDFVG---SQIMGAVGIPVEKLCSGDKIEGAFPILNSSR 172 (852)
Q Consensus 116 nE~F~~~v~~~---~~~l~~~V~D~d~~~---~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~ 172 (852)
||+|.|++... ...|.|+|||++.++ +++||++.|+|+++..+...+.|++|....+
T Consensus 76 ne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~~ 138 (142)
T 2dmg_A 76 DQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG 138 (142)
T ss_dssp EEEEEECCCHHHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSCS
T ss_pred CceEEEEecHHHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCCCC
Confidence 99999998643 258999999999875 3699999999999987778899999976543
No 31
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.67 E-value=1.7e-16 Score=151.92 Aligned_cols=102 Identities=17% Similarity=0.178 Sum_probs=87.2
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEE---CCEEEeeeeeecCCCCCeee
Q 003060 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSI---CGAVIGRTFVISNSESPVWM 116 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l---~~~~~~rT~vi~~t~nP~Wn 116 (852)
.+.|.|+|++|+ ++|. .+.+||||+|.+ ++....||+++++++||+||
T Consensus 25 ~~~L~V~v~~a~---~~d~--------------------------~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wn 75 (138)
T 1wfm_A 25 KAELFVTRLEAV---TSNH--------------------------DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWE 75 (138)
T ss_dssp TTEEEEEEEEEE---CCCC--------------------------SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECS
T ss_pred CCEEEEEEEEEE---cCCC--------------------------CCCcceEEEEEEEcCCCcccEecccCcCCCCCcCC
Confidence 579999999999 3554 566999999999 34445699999999999999
Q ss_pred eEEEEeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccC
Q 003060 117 QHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNS 170 (852)
Q Consensus 117 E~F~~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~ 170 (852)
|+|.|++... ...|.|+|||+|.++ +++||++.|+|.++..+...+.|++|...
T Consensus 76 E~f~f~v~~~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~ 133 (138)
T 1wfm_A 76 EGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS 133 (138)
T ss_dssp SCEEEECCTTSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred ceEEEEecHHHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcCC
Confidence 9999998654 368999999999987 88999999999999867778899999653
No 32
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.67 E-value=1.3e-16 Score=162.03 Aligned_cols=133 Identities=19% Similarity=0.229 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHhccceEEEEEEecCceeEEEeCCCCchHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccccCCCc
Q 003060 250 SCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTND 329 (852)
Q Consensus 250 ~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~ 329 (852)
+.|+.|+++|++||++|+|+.|.| .+ ..|.++|++|++|||+||||+ |.......
T Consensus 46 ~~~~~ll~~I~~A~~sI~i~~y~~-------~~----~~i~~aL~~aa~rGV~Vrii~-D~~~~~~~------------- 100 (196)
T 4ggj_A 46 SSLSRLLRALLAARSSLELCLFAF-------SS----PQLGRAVQLLHQRGVRVRVIT-DCDYMALN------------- 100 (196)
T ss_dssp CHHHHHHHHHHTCSSEEEEEESCB-------CC----HHHHHHHHHHHHTTCEEEEEE-SSCCC----------------
T ss_pred HHHHHHHHHHHHhheEEEEEEEEe-------CC----HHHHHHHHHHHHcCCcEEEEE-eccccccc-------------
Confidence 479999999999999999999844 33 689999999999999999997 86322110
Q ss_pred HHHHhhhcCCCeEEEeccCCCCCCCcccccccccccccCcccEEEEecCCCCCcccEEEEEcccccCCCccCCCCCCCCc
Q 003060 330 EETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFK 409 (852)
Q Consensus 330 ~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~~ 409 (852)
......|...||+|+.... ...+|+|++|||++ ++|+||.|++...+.
T Consensus 101 ~~~~~~l~~~gi~v~~~~~----------------~~~~H~K~~viD~~--------~~~~GS~N~t~~~~~-------- 148 (196)
T 4ggj_A 101 GSQIGLLRKAGIQVRHDQD----------------LGYMHHKFAIVDKK--------VLITGSLNWTTQAIQ-------- 148 (196)
T ss_dssp CCHHHHHHHTTCEEEECCS----------------SSCCCCEEEEETTT--------EEEEESCCBCHHHHH--------
T ss_pred HHHHHHHHhcCCCcccccc----------------cccccCcEEEEcce--------EEEecCccCChhhhc--------
Confidence 1134556778999976532 13589999999997 999999998764321
Q ss_pred ccccccCCCCCCCCcCCCCCCCCCCCeeeccceeeChHHHHHHHHHHHHHhhhc
Q 003060 410 TLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTNFEERWLKAS 463 (852)
Q Consensus 410 ~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~ 463 (852)
..|-++.+.-.+++|..+...|.+.|+...
T Consensus 149 ------------------------~n~E~~~~i~~~~~~~~~~~~F~~~W~~~~ 178 (196)
T 4ggj_A 149 ------------------------NNRENVLIMEDTEYVRLFLEEFERIWEEFD 178 (196)
T ss_dssp ------------------------HCCEEEEEECCHHHHHHHHHHHHHHHHHTC
T ss_pred ------------------------ccceeEEEEECHHHHHHHHHHHHHHHHhCC
Confidence 123333443345579999999999999754
No 33
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.67 E-value=9.1e-17 Score=153.96 Aligned_cols=105 Identities=21% Similarity=0.278 Sum_probs=88.5
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC----CEEEeeeeeecCCCCCee
Q 003060 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC----GAVIGRTFVISNSESPVW 115 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~----~~~~~rT~vi~~t~nP~W 115 (852)
.+.|.|+|++|++|+++|. .+.+||||+|.+. .....||++++++.||+|
T Consensus 20 ~~~L~v~v~~a~~L~~~d~--------------------------~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~w 73 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSRED--------------------------GRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKW 73 (141)
T ss_dssp TTEEEEEEEEEESCCCCSS--------------------------SCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCC
T ss_pred CCEEEEEEEEccCCCCcCC--------------------------CCCCCCEEEEEEecCCCCCcceeCccccCCCCCcc
Confidence 4789999999999999885 4568999999992 334559999999999999
Q ss_pred eeEEEEeecC-C---CcEEEEEEEecCCcC---CceeeeEEEeeeeecCCCeeeeeeecccCC
Q 003060 116 MQHFNVPVAH-S---AAEVHFVVKDNDFVG---SQIMGAVGIPVEKLCSGDKIEGAFPILNSS 171 (852)
Q Consensus 116 nE~F~~~v~~-~---~~~l~~~V~D~d~~~---~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~ 171 (852)
||+|.|++.+ . ...|.|+|||++..+ +++||++.|+|.++.... .+.||+|...+
T Consensus 74 ne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~ 135 (141)
T 1v27_A 74 NQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTHD 135 (141)
T ss_dssp CCCCEECSCCTTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCS
T ss_pred ccEEEEccCCHHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECcccc
Confidence 9999999532 2 268999999999886 789999999999987544 88999997654
No 34
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=99.67 E-value=1.8e-16 Score=154.54 Aligned_cols=106 Identities=23% Similarity=0.352 Sum_probs=88.7
Q ss_pred eceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC----CEEEeeeeeecCCCCCe
Q 003060 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC----GAVIGRTFVISNSESPV 114 (852)
Q Consensus 39 l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~----~~~~~rT~vi~~t~nP~ 114 (852)
..|.|.|+|++|++|+.+| .+.+||||+|.+. .....||++++++.||+
T Consensus 25 ~~~~L~V~v~~a~~L~~~d---------------------------~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~ 77 (153)
T 3fbk_A 25 QDRVLLLHIIEGKGLISKQ---------------------------PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPA 77 (153)
T ss_dssp SSSEEEEEEEEEESCCCCS---------------------------SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCE
T ss_pred CCCEEEEEEEEeeCCCCCC---------------------------CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCc
Confidence 4588999999999999876 2458999999993 22345999999999999
Q ss_pred eeeEEEEee--cCCCcEEEEEEEecCCcC--CceeeeEEEeeeeecC-CCeeeeeeecccCC
Q 003060 115 WMQHFNVPV--AHSAAEVHFVVKDNDFVG--SQIMGAVGIPVEKLCS-GDKIEGAFPILNSS 171 (852)
Q Consensus 115 WnE~F~~~v--~~~~~~l~~~V~D~d~~~--~~~iG~~~i~l~~l~~-g~~~~~w~~L~~~~ 171 (852)
|||+|.|++ ......|.|+|||++.++ +++||++.|+|++|.. +...+.||+|....
T Consensus 78 wne~f~f~v~~~~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~ 139 (153)
T 3fbk_A 78 FHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEH 139 (153)
T ss_dssp EEEEEEEECCGGGTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTT
T ss_pred cccEEEEecccHHhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChh
Confidence 999999998 444467999999999874 7899999999999984 77889999997643
No 35
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=99.67 E-value=4.6e-17 Score=160.92 Aligned_cols=108 Identities=19% Similarity=0.276 Sum_probs=90.9
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCee
Q 003060 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPVW 115 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~----~~~~rT~vi~~t~nP~W 115 (852)
.|.|.|+|++|++|+++|. .+.+||||+|.+.. ....||++++++.||+|
T Consensus 36 ~~~L~V~v~~a~~L~~~d~--------------------------~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~w 89 (166)
T 2cm5_A 36 QGGLIVGIIRCVHLAAMDA--------------------------NGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEF 89 (166)
T ss_dssp TTEEEEEEEEEESCCCCST--------------------------TSCCCEEEEEEEETC---CCEEECCCCCSCSSCEE
T ss_pred CCEEEEEEEEeECCCCccC--------------------------CCCCCcEEEEEEECCCCccceEeCCcccCCCCCcc
Confidence 5899999999999999885 45689999999965 24569999999999999
Q ss_pred eeEEEEeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCC
Q 003060 116 MQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPC 175 (852)
Q Consensus 116 nE~F~~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~ 175 (852)
||+|.|++... ...|.|+|||++.++ +++||++.|++.++. ...++|++|+...+++.
T Consensus 90 ne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~--~~~~~W~~l~~~~~~~~ 151 (166)
T 2cm5_A 90 NEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG--ERLKHWYECLKNKDKKI 151 (166)
T ss_dssp EEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH--HHHHHHHHHHHCTTCCE
T ss_pred cceEEEEcchHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccCC--chhHHHHHHHhCCCCcc
Confidence 99999998653 358999999999987 789999999998764 45678888887666543
No 36
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=99.66 E-value=1.8e-16 Score=152.37 Aligned_cols=105 Identities=23% Similarity=0.343 Sum_probs=89.9
Q ss_pred eceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCCCCCe
Q 003060 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNSESPV 114 (852)
Q Consensus 39 l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~----~~~~rT~vi~~t~nP~ 114 (852)
..|.|.|+|++|++|+++|. .+.+||||+|.+.. ....||++++++.||+
T Consensus 27 ~~~~L~V~v~~a~~L~~~d~--------------------------~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~ 80 (142)
T 2chd_A 27 DNSNLQCTIIRAKGLKPMDS--------------------------NGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPV 80 (142)
T ss_dssp GGTEEEEEEEEEESCCCCCT--------------------------TSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCE
T ss_pred CCCEEEEEEEEecCCCCCCC--------------------------CCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCc
Confidence 34789999999999998875 45689999999964 2445999999999999
Q ss_pred eeeEEEEe-ecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeeccc
Q 003060 115 WMQHFNVP-VAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILN 169 (852)
Q Consensus 115 WnE~F~~~-v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~ 169 (852)
|||+|.|. +... ...|.|+|||++.++ +++||++.|+|+++..+...+.|++|..
T Consensus 81 wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 140 (142)
T 2chd_A 81 WNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 140 (142)
T ss_dssp EEEEEEEESCCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred CcCEEEEcccCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence 99999998 5432 268999999999887 7899999999999998888888998854
No 37
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}
Probab=99.64 E-value=7.2e-16 Score=144.78 Aligned_cols=116 Identities=16% Similarity=0.290 Sum_probs=103.9
Q ss_pred EEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeec-CCCCCeeeeEEE
Q 003060 42 NLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVIS-NSESPVWMQHFN 120 (852)
Q Consensus 42 ~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~-~t~nP~WnE~F~ 120 (852)
.|+|+|..|.+|+. ++||||+|.+.+.+. |||+++ ++.||+|||.|.
T Consensus 22 sL~V~l~~a~~Lpg-------------------------------~~Dp~akv~FRg~k~-kTkvi~~~~~npvfnE~F~ 69 (144)
T 3l9b_A 22 ALIVHLKTVSELRG-------------------------------RADRIAKVTFRGQSF-YSRVLENCEDVADFDETFR 69 (144)
T ss_dssp EEEEEEEEEESCCS-------------------------------CEEEEEEEEETTEEE-ECCCEEEECSCEEEEEEEE
T ss_pred EEEEEEEEecCCCC-------------------------------CCCCeEEEEEeccce-eeEEeccCCCCceEcceEE
Confidence 79999999999982 379999999999888 999998 699999999999
Q ss_pred EeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEeeccc
Q 003060 121 VPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTPVE 191 (852)
Q Consensus 121 ~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~p~~ 191 (852)
|++..+ .+.|.|.|+|+++++ +++||++.++|+++..++....+.+|++.+.++. +++|.+.++|.|.+
T Consensus 70 wpl~~~ld~~e~L~v~V~d~~~v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~--~a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 70 WPVASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAII--KTSLSMEVRYQAAD 142 (144)
T ss_dssp EEESSCCCTTCEEEEEEEEECTTSCCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEE--EEEEEEEEEEEETT
T ss_pred ecCCCCCCCCCEEEEEEEECccccCCCEEEEEEEEhHHhccCCeEEEeecccCCCCCcc--ccEEEEEEEecCCC
Confidence 998764 378999999999987 8899999999999998888888899999999875 47999999998854
No 38
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=99.64 E-value=6.4e-16 Score=147.73 Aligned_cols=105 Identities=25% Similarity=0.384 Sum_probs=86.9
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CEEEeeeeeecCCCCCeeee
Q 003060 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GAVIGRTFVISNSESPVWMQ 117 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~~~~~rT~vi~~t~nP~WnE 117 (852)
.+.|.|+|++|++|+.+|.. .+.+||||+|.+. +....||++++++.||+|||
T Consensus 21 ~~~L~v~v~~a~~L~~~d~~-------------------------~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne 75 (138)
T 1ugk_A 21 RKAFVVNIKEARGLPAMDEQ-------------------------SMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDE 75 (138)
T ss_dssp GTEEEEEEEEEESCCCCBTT-------------------------TTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEE
T ss_pred CCEEEEEEEEeeCCCCCCCC-------------------------CCCCCCEEEEEEecCCCceEecCcCcCCCCCcEee
Confidence 47899999999999998752 1458999999995 23455999999999999999
Q ss_pred EEEEe-ecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCe-eeeeeeccc
Q 003060 118 HFNVP-VAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDK-IEGAFPILN 169 (852)
Q Consensus 118 ~F~~~-v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~-~~~w~~L~~ 169 (852)
+|.|+ +... ...|.|+|||++.++ +++||++.|+|+++..+.. ...|++|..
T Consensus 76 ~f~f~~v~~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~ 133 (138)
T 1ugk_A 76 TFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133 (138)
T ss_dssp EEEEECCCSTTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred EEEEcCcCHHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence 99995 6543 268999999999887 7899999999999986543 456789854
No 39
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=99.64 E-value=8e-16 Score=150.78 Aligned_cols=91 Identities=30% Similarity=0.434 Sum_probs=78.4
Q ss_pred eceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--C--EEEeeeeeecCCCCCe
Q 003060 39 LHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--G--AVIGRTFVISNSESPV 114 (852)
Q Consensus 39 l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~--~~~~rT~vi~~t~nP~ 114 (852)
..|.|.|+|++|++|+++|. .+.+||||+|.+. + ....||++++++.||+
T Consensus 23 ~~~~L~V~v~~a~~L~~~d~--------------------------~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~ 76 (159)
T 1tjx_A 23 TAGKLTVVILEAKNLKKMDV--------------------------GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 76 (159)
T ss_dssp TTTEEEEEEEEEESCCCCST--------------------------TSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCE
T ss_pred CCCEEEEEEEEeeCCCCccC--------------------------CCCCCeEEEEEEEeCCceeceeeCceecCCCCCc
Confidence 35899999999999999885 4568999999995 2 2456999999999999
Q ss_pred eeeEEEEeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeee
Q 003060 115 WMQHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKL 155 (852)
Q Consensus 115 WnE~F~~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l 155 (852)
|||+|.|.+... ...|.|+|||++.++ +++||++.|++..+
T Consensus 77 wne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~ 121 (159)
T 1tjx_A 77 YNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121 (159)
T ss_dssp EEEEEEEECCGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred ccceEEEEcCHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCC
Confidence 999999998654 257999999999987 88999999999864
No 40
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=3.5e-16 Score=151.21 Aligned_cols=109 Identities=20% Similarity=0.279 Sum_probs=88.3
Q ss_pred ceEEEEEEEEeeCCCC-CCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeecCCCCCeee
Q 003060 40 HGNLDIWVKEAKNLPN-MDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--AVIGRTFVISNSESPVWM 116 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~--~~~~rT~vi~~t~nP~Wn 116 (852)
.|.|.|+|++|++|++ +|.-+ .+...+.+||||+|.+.. ....||++++++.||+||
T Consensus 25 ~~~L~V~v~~a~~L~~~~d~~g--------------------~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wn 84 (147)
T 2enp_A 25 HNHLTVRVIEARDLPPPISHDG--------------------SRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFE 84 (147)
T ss_dssp TTEEEEEEEEEECCCCSCSSCC--------------------SSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCC
T ss_pred CCEEEEEEEEEeCCCCcccccc--------------------ccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEe
Confidence 5799999999999998 45310 001135689999999952 234599999999999999
Q ss_pred eEEEEeecCC---CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecc
Q 003060 117 QHFNVPVAHS---AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (852)
Q Consensus 117 E~F~~~v~~~---~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~ 168 (852)
|+|.|++... ...|.|+|||++.++ +++||++.|+|.++..+...+.|++|.
T Consensus 85 e~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~ 140 (147)
T 2enp_A 85 ERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALI 140 (147)
T ss_dssp BCCEECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCB
T ss_pred eeEEEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEee
Confidence 9999998653 258999999999887 789999999999998777778899985
No 41
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.60 E-value=2.6e-15 Score=142.34 Aligned_cols=84 Identities=21% Similarity=0.315 Sum_probs=70.5
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeec-CCCCCeeeeEE
Q 003060 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVIS-NSESPVWMQHF 119 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~-~t~nP~WnE~F 119 (852)
|.|.|+|++|++|+. .|.+||||+|.. +.. ||+++. ++.||+|||+|
T Consensus 5 ~~L~V~V~~A~~l~~-----------------------------~g~~DPYv~v~~--~~~-kt~~~~~~t~nP~WnE~f 52 (131)
T 2cjt_A 5 SLLCVGVKKAKFDGA-----------------------------QEKFNTYVTLKV--QNV-KSTTIAVRGSQPSWEQDF 52 (131)
T ss_dssp EEEEEEEEEEECSSC-----------------------------GGGCEEEEEEEE--TTE-EEECCCEESSSCEEEEEE
T ss_pred eEEEEEEEEeECCCC-----------------------------CCCcCeEEEEEe--cCE-EEeEecCCCCCceECCEE
Confidence 899999999998852 234899999992 223 566655 69999999999
Q ss_pred EEeecCCCcEEEEEEEecCCcC-CceeeeEEEeeeeecC
Q 003060 120 NVPVAHSAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCS 157 (852)
Q Consensus 120 ~~~v~~~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~ 157 (852)
.|.+......|.|+|+|+| .+ +++||++.|||+++..
T Consensus 53 ~f~v~~~~~~L~~~V~D~d-~~~dd~iG~~~i~l~~l~~ 90 (131)
T 2cjt_A 53 MFEINRLDLGLTVEVWNKG-LIWDTMVGTVWIPLRTIRQ 90 (131)
T ss_dssp EEEECCCSSEEEEEEEECC-SSCEEEEEEEEEEGGGSCB
T ss_pred EEEEeCCCCeEEEEEEECC-CCCCCeEEEEEEEHHHhhh
Confidence 9999877788999999999 55 8999999999999864
No 42
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.57 E-value=1.2e-14 Score=141.64 Aligned_cols=133 Identities=19% Similarity=0.218 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHhccceEEEEEEecCceeEEEeCCCCchHHHHHHHHhhhcCCeEEEEEeCCCccccccccccccccCCCc
Q 003060 250 SCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIMSTND 329 (852)
Q Consensus 250 ~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~~~~~~ 329 (852)
..++.+.++|++|+++|+|+.|.+. + ..|.++|.+|++|||+||||+ |....... ..
T Consensus 14 ~~~~~~~~~i~~A~~~I~i~~~~~~-------~----~~i~~aL~~a~~rGV~Vril~-~~~~~~~~-----------~~ 70 (155)
T 1byr_A 14 SARVLVLSAIDSAKTSIRMMAYSFT-------A----PDIMKALVAAKKRGVDVKIVI-DERGNTGR-----------AS 70 (155)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESSBC-------C----HHHHHHHHHHHHTTCEEEEEE-ESTTCCSH-----------HH
T ss_pred cHHHHHHHHHHHHhhEEEEEEEEeC-------C----HHHHHHHHHHHHCCCEEEEEE-eCcccccc-----------cc
Confidence 4689999999999999999998542 2 689999999999999999997 65432100 01
Q ss_pred HHHHhhhcCCCeEEEeccCCCCCCCcccccccccccccCcccEEEEecCCCCCcccEEEEEcccccCCCccCCCCCCCCc
Q 003060 330 EETRRFFKHSSVQVLLCPRSAGKGHSFVKKQEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYDTPAHPLFK 409 (852)
Q Consensus 330 ~~~~~~~~~~~v~v~~~p~~~~~~~~~~~~~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~r~Dt~~H~~~~ 409 (852)
....+.|.+.|++++.+++. ..+|.|++|||++ ++++||.|++...+
T Consensus 71 ~~~~~~L~~~gv~v~~~~~~----------------~~~H~K~~iiD~~--------~~~iGS~N~~~~~~--------- 117 (155)
T 1byr_A 71 IAAMNYIANSGIPLRTDSNF----------------PIQHDKVIIVDNV--------TVETGSFNFTKAAE--------- 117 (155)
T ss_dssp HHHHHHHHHTTCCEEEECSS----------------SCCCCCEEEETTT--------EEEEESCCBSHHHH---------
T ss_pred HHHHHHHHHCCCeEEEcCCc----------------ccccceEEEECCC--------EEEEECCCCCcccc---------
Confidence 23445566789998876321 2699999999996 99999999876311
Q ss_pred ccccccCCCCCCCCcCCCCCCCCCCCeeeccceeeCh--HHHHHHHHHHHHHhhh
Q 003060 410 TLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGP--AAYDILTNFEERWLKA 462 (852)
Q Consensus 410 ~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gp--aa~dl~~~F~~rW~~~ 462 (852)
..|++..+.+.|+ .+.++...|.+.|+.+
T Consensus 118 ------------------------~~n~E~~~~i~~~~~l~~~~~~~f~~~w~~~ 148 (155)
T 1byr_A 118 ------------------------TKNSENAVVIWNMPKLAESFLEHWQDRWNQG 148 (155)
T ss_dssp ------------------------HTSCEEEEEEESCHHHHHHHHHHHHHHHHTC
T ss_pred ------------------------ccCcccEEEEcCcHHHHHHHHHHHHHHHHhC
Confidence 2467889999994 7999999999999865
No 43
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.55 E-value=1.3e-14 Score=156.97 Aligned_cols=123 Identities=24% Similarity=0.294 Sum_probs=98.1
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEE--CCEEEeeeeeecCCCCCeeee
Q 003060 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSI--CGAVIGRTFVISNSESPVWMQ 117 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l--~~~~~~rT~vi~~t~nP~WnE 117 (852)
.|.|.|+|++|++|+.+|. .+.+||||+|.+ ++....||+++++++||+|||
T Consensus 19 ~~~L~v~v~~a~~L~~~d~--------------------------~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne 72 (296)
T 1dqv_A 19 SDQLVVRILQALDLPAKDS--------------------------NGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNE 72 (296)
T ss_dssp SCEEEEEEEEEECCCCCST--------------------------TSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEE
T ss_pred CCEEEEEEEEeECCCCcCC--------------------------CCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEee
Confidence 4899999999999999885 456999999999 233344999999999999999
Q ss_pred EEEEeecCCC---cEEEEEEEecCCcC-CceeeeEEEe-eeeecC-CCeeeeeeecccCCCCCCCCCceeeeeEEeec
Q 003060 118 HFNVPVAHSA---AEVHFVVKDNDFVG-SQIMGAVGIP-VEKLCS-GDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (852)
Q Consensus 118 ~F~~~v~~~~---~~l~~~V~D~d~~~-~~~iG~~~i~-l~~l~~-g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~p 189 (852)
+|.|.+.... ..|.|.|||.|.++ +++||++.++ +.++.. +...+.|++|....+.. ...|+|++.+.|.|
T Consensus 73 ~f~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~-~~~G~i~vsl~y~~ 149 (296)
T 1dqv_A 73 TFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEK-ADLGELNFSLCYLP 149 (296)
T ss_dssp EEEEECCGGGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCC-SCCCEEEEEEEEET
T ss_pred EEEEEecHHHhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeeccccccccc-cccceEEEEEEecc
Confidence 9999986432 47999999999887 8999999996 444443 34567899997544332 35689999998865
No 44
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=99.54 E-value=1.8e-14 Score=170.24 Aligned_cols=121 Identities=26% Similarity=0.374 Sum_probs=101.8
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----EEEeeeeeecCC-CCCe
Q 003060 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----AVIGRTFVISNS-ESPV 114 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~----~~~~rT~vi~~t-~nP~ 114 (852)
.++|+|+|++|++|+.+|.. +.+.+||||+|.+.+ ....||++++++ .||+
T Consensus 496 ~~~L~V~Vi~A~~L~~~d~~------------------------~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~ 551 (624)
T 1djx_A 496 PERLRVRIISGQQLPKVNKN------------------------KNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPR 551 (624)
T ss_dssp CEEEEEEEEEEESCCCCSSC------------------------SSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCE
T ss_pred ceEEEEEEEEcCCCCccccc------------------------ccCCCCcEEEEEEecCCCCcceeecccccCCCCCCc
Confidence 37999999999999987731 145699999999944 234599999997 9999
Q ss_pred eeeEEEEeecCCC-cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEee
Q 003060 115 WMQHFNVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (852)
Q Consensus 115 WnE~F~~~v~~~~-~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~ 188 (852)
|||+|.|++..+. ..|+|+|+|+|..+ +++||++.|||++|..|. +|++|.+..|++. ..++|.+.++|.
T Consensus 552 WnE~f~F~v~~~el~~L~~~V~D~D~~~~dd~iG~~~ipl~~L~~G~---r~v~L~d~~g~~~-~~~~L~v~i~~~ 623 (624)
T 1djx_A 552 WDMEFEFEVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY---RHVHLLSKNGDQH-PSATLFVKISIQ 623 (624)
T ss_dssp EEEEEEEEESCGGGCEEEEEEEECCSSSCCEEEEEEEEEGGGBCCEE---EEEEEECTTSCEE-EEEEEEEEEEEE
T ss_pred cCceEEEEEecCCCCEEEEEEEEcCCCCCCceeEEEEEEHHHcCCCc---EEEeCCCCCcCCC-CceEEEEEEEEE
Confidence 9999999998765 78999999999886 899999999999998763 6999999988865 457888888774
No 45
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}
Probab=99.54 E-value=8e-16 Score=177.32 Aligned_cols=124 Identities=19% Similarity=0.341 Sum_probs=23.2
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCC---CCCeee
Q 003060 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNS---ESPVWM 116 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t---~nP~Wn 116 (852)
.|.|+|+|++|++|+++ .||||++.+++.+++||++++++ .||+||
T Consensus 10 ~~~L~V~VieAk~L~~~-------------------------------ddpYv~v~l~~~~~~kT~v~~kt~~glnP~Wn 58 (483)
T 3bxj_A 10 DNVLKLWIIEARELPPK-------------------------------KRYYCELCLDDMLYARTTSKPRSASGDTVFWG 58 (483)
T ss_dssp EECC----------------------------------------------------------------------------
T ss_pred ccEEEEEEEEcCCcCCC-------------------------------CCCeEEEEECCeEEeeeeEEeCCCCCCCCccc
Confidence 48999999999999864 28999999998878899999999 999999
Q ss_pred eEEEEeecCCCcEEEEEEEec-CC---c-CCceeeeEEEeeeeecCCCeeeeeeecccCCC-------------------
Q 003060 117 QHFNVPVAHSAAEVHFVVKDN-DF---V-GSQIMGAVGIPVEKLCSGDKIEGAFPILNSSR------------------- 172 (852)
Q Consensus 117 E~F~~~v~~~~~~l~~~V~D~-d~---~-~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~------------------- 172 (852)
|+|.|.+.+..+.|.|+|||. |. . ++++||++.|+++++..+...+.||+|.++.+
T Consensus 59 E~F~f~~~~~~~~L~v~V~d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~ 138 (483)
T 3bxj_A 59 EHFEFNNLPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGS 138 (483)
T ss_dssp CCEECC------------------------------------------CCEECC--------------------------
T ss_pred cEEEEecCCCccEEEEEEEecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccc
Confidence 999999765568899999994 42 3 48999999999999998888999999975432
Q ss_pred --CCCCCCceeeeeEEeecccccc
Q 003060 173 --KPCKAGAVLSLSIQYTPVENMS 194 (852)
Q Consensus 173 --~~~~~~g~I~l~l~f~p~~~~~ 194 (852)
+..+..|.|++.++|.+....|
T Consensus 139 ~~~~~~~~G~lrL~v~~~~~~vlP 162 (483)
T 3bxj_A 139 GGKGKGGCPAVRLKARYQTMSILP 162 (483)
T ss_dssp ------------CEEEEEECCBCC
T ss_pred cccCCCCCceEEEEEEeeeeeecc
Confidence 1223468999999998754433
No 46
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=99.53 E-value=2.6e-14 Score=166.42 Aligned_cols=115 Identities=18% Similarity=0.271 Sum_probs=98.2
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEE
Q 003060 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHF 119 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F 119 (852)
.|+|.|+|++|++|+++|. .|.+||||+|.+++.+. ||+++++++||+|||+|
T Consensus 386 ~~~l~v~v~~a~~L~~~d~--------------------------~~~sdpyv~v~~~~~~~-~T~~~~~t~nP~w~e~f 438 (510)
T 3jzy_A 386 IGRLMVHVIEATELKACKP--------------------------NGKSNPYCEISMGSQSY-TTRTIQDTLNPKWNFNC 438 (510)
T ss_dssp CEEEEEEEEEEESCCCCST--------------------------TSCCCEEEEEEETTEEE-ECCCCSSCSSCEEEEEE
T ss_pred CceEEEEeceeecCCCCCC--------------------------CCCCCeEEEEEECCeec-cCCccCCCCCCccCceE
Confidence 3899999999999998886 45699999999988765 99999999999999999
Q ss_pred EEeecCCC-cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCe----eeeeeecccCCCCCCCCCceeeeeEEe
Q 003060 120 NVPVAHSA-AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDK----IEGAFPILNSSRKPCKAGAVLSLSIQY 187 (852)
Q Consensus 120 ~~~v~~~~-~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~----~~~w~~L~~~~~~~~~~~g~I~l~l~f 187 (852)
.|++.... ..|.|+|||+|.++ +++||++.++|+++..+.. .+.|++|.+. ..|+|++.+++
T Consensus 439 ~f~~~~~~~~~l~~~v~d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~------~~G~i~l~~~l 506 (510)
T 3jzy_A 439 QFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEV------PTGEVWVRFDL 506 (510)
T ss_dssp EEEESCTTTCEEEEEEEECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSS------SSCEEEEEEEE
T ss_pred EEEecCCCCCEEEEEEEeCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCCC------CCceEEEEEEE
Confidence 99997665 67999999999987 8899999999999986543 6789998532 33788777664
No 47
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.52 E-value=7.1e-15 Score=152.00 Aligned_cols=153 Identities=15% Similarity=0.134 Sum_probs=105.8
Q ss_pred cCchhHHHHHHHHHHhccceEEEEEEecCceeEEEeCCCCchHHHHHHHHhhhcCCeEEEEEeCCCcccccccccccccc
Q 003060 246 FNHESCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDDPTSRSILGYKTDGIM 325 (852)
Q Consensus 246 y~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a~rGV~VriLvwD~~~s~~~~~~~~~~~~ 325 (852)
|...+.++.|+++|++|+++|+|+.|.| .+ ..|.++|++||+|||+||||+ |..++....
T Consensus 54 ~~~~~~~~~ii~~I~~A~~sI~i~~Y~~-------~~----~~I~~aL~~Aa~RGV~VRii~-D~~~~~~~~-------- 113 (220)
T 4gel_A 54 HCSLRNVAKIVEQIDRAVYSIDLAIYTF-------TS----LFLADSIKRALQRGVIIRIIS-DGEMVYSKG-------- 113 (220)
T ss_dssp TCHHHHHHHHHHHHHTCSSEEEEECSCB-------CC----HHHHHHHHHHHHHTCEEEEEC-CTTTTTSTT--------
T ss_pred cCcHHHHHHHHHHHHHhhhEEEEEEEEe-------CC----HHHHHHHHHHHHcCCeEEEEE-echhhhhhH--------
Confidence 4455789999999999999999999844 33 689999999999999999996 876543210
Q ss_pred CCCcHHHHhhhcCCCeEEEeccCCCCCCCccc--cc--ccccccccCcccEEEEecCCCCCcccEEEEEcccccCCCccC
Q 003060 326 STNDEETRRFFKHSSVQVLLCPRSAGKGHSFV--KK--QEVGTIYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYD 401 (852)
Q Consensus 326 ~~~~~~~~~~~~~~~v~v~~~p~~~~~~~~~~--~~--~~~~~~~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~r~D 401 (852)
.....+...++.+.........-..++ .. ...+.+.++|.|++|+|+. ++++||.|++....
T Consensus 114 -----~~~~~~~~~~~~~~~~~~~~~~h~K~~viD~~~~~~~~~~~~H~K~~v~D~~--------~v~~GS~N~t~~s~- 179 (220)
T 4gel_A 114 -----SQISMLAQLGVPVRVPITTNLMHNKFCIIDGFERVEEIRLLRKLKFMRPCYS--------IVISGSVNWTALGL- 179 (220)
T ss_dssp -----CHHHHHHHTTCCEEECCSSSCBCCCEEEESCHHHHHHHHHHTTCSCCCCCCC--------EEEEESCCBSHHHH-
T ss_pred -----HHHHHHHhcCCcEEeecccccccceeEEEcchhcccccccccceeccccccc--------eEEecCcccccccc-
Confidence 112223344555544321110001111 00 0112345788888888885 99999999765311
Q ss_pred CCCCCCCcccccccCCCCCCCCcCCCCCCCCCCCeeeccceeeChHHHHHHHHHHHHHhhhc
Q 003060 402 TPAHPLFKTLETVHKDDYYNPSLLEPIAGGPREPWHDLHCRIDGPAAYDILTNFEERWLKAS 463 (852)
Q Consensus 402 t~~H~~~~~~~~~~~~dy~n~~~~~~~~~~~~~pWhDv~~~i~Gpaa~dl~~~F~~rW~~~~ 463 (852)
...|.|+.+...|++|.++.+.|.+.|+...
T Consensus 180 -------------------------------~~N~E~~~vi~~~~~a~~~~~~F~~~W~~~~ 210 (220)
T 4gel_A 180 -------------------------------GGNWENCIITADDKLTATFQAEFQRMWRAFA 210 (220)
T ss_dssp -------------------------------HTSBEEEEEECCHHHHHHHHHHHHHHHHHSE
T ss_pred -------------------------------ccCceEEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 2468899999999999999999999999754
No 48
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=99.51 E-value=4e-14 Score=139.70 Aligned_cols=85 Identities=21% Similarity=0.317 Sum_probs=71.1
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeec-CCCCCeeeeEE
Q 003060 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVIS-NSESPVWMQHF 119 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~-~t~nP~WnE~F 119 (852)
|.|.|+|++|++|+. .+.+||||+|+. +.. ||+++. ++.||+|||+|
T Consensus 14 ~~L~V~V~~A~~l~~-----------------------------~g~~DPYV~v~~--~~~-kt~~~~~~t~nP~WnE~f 61 (167)
T 2cjs_A 14 SLLCVGVKKAKFDGA-----------------------------QEKFNTYVTLKV--QNV-ESTTIAVRGSQPSWEQDF 61 (167)
T ss_dssp CEEEEEEEEEECSSC-----------------------------GGGCEEEEEEEE--TTE-EEECCCEESSSCEEEEEE
T ss_pred EEEEEEEEEEECCCC-----------------------------CCCCCeEEEEEe--cce-EEEEecCCCCCCCCCCEE
Confidence 899999999998852 234899999992 223 677775 59999999999
Q ss_pred EEeecCCCcEEEEEEEecCCcCCceeeeEEEeeeeecC
Q 003060 120 NVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLCS 157 (852)
Q Consensus 120 ~~~v~~~~~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~ 157 (852)
.|.+......|.|+|||+|..+|++||++.|+|+++..
T Consensus 62 ~f~v~~~~~~L~~~V~D~d~~~dd~iG~~~i~L~~l~~ 99 (167)
T 2cjs_A 62 MFEINRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQ 99 (167)
T ss_dssp EEECCCTTSEEEEEEEECCSSCCEEEEEEEEEGGGSCB
T ss_pred EEEeeCCCCEEEEEEEECCCCCCceEEEEEEEHHHhcc
Confidence 99998777889999999993348999999999999864
No 49
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=99.49 E-value=9.4e-14 Score=160.71 Aligned_cols=108 Identities=21% Similarity=0.260 Sum_probs=91.1
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECCEEEeeeeeecCCCCCeeeeEEE
Q 003060 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICGAVIGRTFVISNSESPVWMQHFN 120 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~~~~~rT~vi~~t~nP~WnE~F~ 120 (852)
|.|.|+|++|++|+. |. .|.+||||+|.+++.+ .||+|+++++||+|||+|.
T Consensus 394 ~~L~V~V~~A~~L~~-D~--------------------------~g~sDPYV~v~l~~~~-~kTkvik~tlNP~Wne~f~ 445 (540)
T 3nsj_A 394 AHLVVSNFRAEHLWG-DY--------------------------TTATDAYLKVFFGGQE-FRTGVVWNNNNPRWTDKMD 445 (540)
T ss_dssp EEEEEEEEEEESCCC-SS--------------------------CSCCCEEEEEEETTEE-EECCCBCSCSSCBCCCCEE
T ss_pred cEEEEEEEEccCCCc-cc--------------------------CCCcCeEEEEEECCEe-eeeeeecCCCCCCCCeEEE
Confidence 899999999999998 86 3559999999999877 5999999999999999999
Q ss_pred EeecC--CCcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEeec
Q 003060 121 VPVAH--SAAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (852)
Q Consensus 121 ~~v~~--~~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~p 189 (852)
|.+.. ..+.|+|.|||+|..+ +|+||++.++|. .| ..+.|++| + + |.|+++++..-
T Consensus 446 f~~~~~~~~~~L~~~V~D~D~~~~dD~LG~~~~~L~---~g-~~~~~~~l-~-~-------G~l~~~~~~~c 504 (540)
T 3nsj_A 446 FENVLLSTGGPLRVQVWDADYGWDDDLLGSCDRSPH---SG-FHEVTCEL-N-H-------GRVKFSYHAKC 504 (540)
T ss_dssp EEEEETTTCCCEEEEEEECCSSSCCEEEEEEEECCC---SE-EEEEEEEC-S-S-------SEEEEEEEEEE
T ss_pred EEEecCCCCCEEEEEEEECCCCCCCCEEEEEEEEee---CC-cEEEEEEc-C-C-------eEEEEEEEEEE
Confidence 98643 4578999999999987 799999999987 34 36789886 2 1 57888877653
No 50
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=99.49 E-value=4.8e-14 Score=137.25 Aligned_cols=117 Identities=19% Similarity=0.162 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhccceEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCCCCCCCCChhh
Q 003060 544 SIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMWPEGITTSPQI 623 (852)
Q Consensus 544 sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~peg~~~~~~~ 623 (852)
++.++++++|++|+++|+|+++||.. ..+..+|.++ +++||+|+|+++..+.. .
T Consensus 14 ~~~~~~~~~i~~A~~~I~i~~~~~~~------------------~~i~~aL~~a--~~rGV~Vril~~~~~~~---~--- 67 (155)
T 1byr_A 14 SARVLVLSAIDSAKTSIRMMAYSFTA------------------PDIMKALVAA--KKRGVDVKIVIDERGNT---G--- 67 (155)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESSBCC------------------HHHHHHHHHH--HHTTCEEEEEEESTTCC---S---
T ss_pred cHHHHHHHHHHHHhhEEEEEEEEeCC------------------HHHHHHHHHH--HHCCCEEEEEEeCcccc---c---
Confidence 68999999999999999999999942 1355556555 36899999999975421 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchHHHhhccCeeeEEEE
Q 003060 624 QRILYWQHKTMQMMYETIYKALVESGLQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQALAKKNRRFQIYIH 703 (852)
Q Consensus 624 ~~i~~~~~~t~~~~~~~~~~~L~~~Gv~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvH 703 (852)
+. ....++.|.+.|+++++.. . ...+|
T Consensus 68 -----~~-------~~~~~~~L~~~gv~v~~~~------------------~-----------------------~~~~H 94 (155)
T 1byr_A 68 -----RA-------SIAAMNYIANSGIPLRTDS------------------N-----------------------FPIQH 94 (155)
T ss_dssp -----HH-------HHHHHHHHHHTTCCEEEEC------------------S-----------------------SSCCC
T ss_pred -----cc-------cHHHHHHHHHCCCeEEEcC------------------C-----------------------ccccc
Confidence 01 1245677888998765310 0 02689
Q ss_pred eeEEEEeceEEEEeccCCCCCCcCCCCCCceEEEeecC
Q 003060 704 SKGMIVDDEYVIIGSANINQRSLEGTRDTEIAMGAYQP 741 (852)
Q Consensus 704 SKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~ 741 (852)
+|++||||+++++||+||+.||+. .|.|+++.+.++
T Consensus 95 ~K~~iiD~~~~~iGS~N~~~~~~~--~n~E~~~~i~~~ 130 (155)
T 1byr_A 95 DKVIIVDNVTVETGSFNFTKAAET--KNSENAVVIWNM 130 (155)
T ss_dssp CCEEEETTTEEEEESCCBSHHHHH--TSCEEEEEEESC
T ss_pred ceEEEECCCEEEEECCCCCccccc--cCcccEEEEcCc
Confidence 999999999999999999999997 799999999884
No 51
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=99.44 E-value=7e-14 Score=150.11 Aligned_cols=103 Identities=27% Similarity=0.393 Sum_probs=83.1
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--CE--EEeeeeeecCCCCCee
Q 003060 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--GA--VIGRTFVISNSESPVW 115 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~~--~~~rT~vi~~t~nP~W 115 (852)
.|.|.|+|++|++|+++|. .+.+||||+|.+. +. ...||++++++.||+|
T Consensus 149 ~~~l~v~v~~a~~L~~~d~--------------------------~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~w 202 (284)
T 2r83_A 149 AGKLTVVILEAKNLKKMDV--------------------------GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYY 202 (284)
T ss_dssp TTEEEEEEEEEESCCCCST--------------------------TSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEE
T ss_pred CCceEEEEEEeECCCCcCC--------------------------CCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEE
Confidence 4789999999999999885 4568999999993 32 4469999999999999
Q ss_pred eeEEEEeecCCC---cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccC
Q 003060 116 MQHFNVPVAHSA---AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNS 170 (852)
Q Consensus 116 nE~F~~~v~~~~---~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~ 170 (852)
||+|.|.+.... ..|.|+|||++.++ +++||++.|+++.+. ...++|++|+..
T Consensus 203 ne~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~--~~~~~w~~~~~~ 259 (284)
T 2r83_A 203 NESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTG--AELRHWSDMLAN 259 (284)
T ss_dssp EEEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEEEEETTCCH--HHHHHHHHHHHS
T ss_pred ceeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCC--cHHHHHHHHHHC
Confidence 999999987553 47999999999987 889999999997642 234455555443
No 52
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=99.43 E-value=1.5e-13 Score=139.48 Aligned_cols=131 Identities=17% Similarity=0.139 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhccceEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCCCCCCCCChhh
Q 003060 544 SIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMWPEGITTSPQI 623 (852)
Q Consensus 544 sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~peg~~~~~~~ 623 (852)
+....++++|++|+++|+|+..+| ++ .+++.+|.+| +++||+|+||+.......
T Consensus 46 ~~~~~ll~~I~~A~~sI~i~~y~~-~~-----------------~~i~~aL~~a--a~rGV~Vrii~D~~~~~~------ 99 (196)
T 4ggj_A 46 SSLSRLLRALLAARSSLELCLFAF-SS-----------------PQLGRAVQLL--HQRGVRVRVITDCDYMAL------ 99 (196)
T ss_dssp CHHHHHHHHHHTCSSEEEEEESCB-CC-----------------HHHHHHHHHH--HHTTCEEEEEESSCCC--------
T ss_pred HHHHHHHHHHHHhheEEEEEEEEe-CC-----------------HHHHHHHHHH--HHcCCcEEEEEecccccc------
Confidence 467889999999999999998444 33 2466666665 478999999996422100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchHHHhhccCeeeEEEE
Q 003060 624 QRILYWQHKTMQMMYETIYKALVESGLQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQALAKKNRRFQIYIH 703 (852)
Q Consensus 624 ~~i~~~~~~t~~~~~~~~~~~L~~~Gv~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iyvH 703 (852)
..+.+..|.++|+++++.. ...++|
T Consensus 100 --------------~~~~~~~l~~~gi~v~~~~-----------------------------------------~~~~~H 124 (196)
T 4ggj_A 100 --------------NGSQIGLLRKAGIQVRHDQ-----------------------------------------DLGYMH 124 (196)
T ss_dssp ---------------CCHHHHHHHTTCEEEECC-----------------------------------------SSSCCC
T ss_pred --------------cHHHHHHHHhcCCCccccc-----------------------------------------cccccc
Confidence 0123567888998775310 012579
Q ss_pred eeEEEEeceEEEEeccCCCCCCcCCCCCCceEEEeecCcccccccCCCCCchHHHHHHHHHHH
Q 003060 704 SKGMIVDDEYVIIGSANINQRSLEGTRDTEIAMGAYQPRHTWASKLSNPYGQVYGYRMSLWAE 766 (852)
Q Consensus 704 SKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~~~~~~~~~~~~~~~~lR~~Lw~e 766 (852)
+|+||||++++++||+||+.+|+. .|.|..++++|++.. ......-.++|.+
T Consensus 125 ~K~~viD~~~~~~GS~N~t~~~~~--~n~E~~~~i~~~~~~---------~~~~~~F~~~W~~ 176 (196)
T 4ggj_A 125 HKFAIVDKKVLITGSLNWTTQAIQ--NNRENVLIMEDTEYV---------RLFLEEFERIWEE 176 (196)
T ss_dssp CEEEEETTTEEEEESCCBCHHHHH--HCCEEEEEECCHHHH---------HHHHHHHHHHHHH
T ss_pred CcEEEEcceEEEecCccCChhhhc--ccceeEEEEECHHHH---------HHHHHHHHHHHHh
Confidence 999999999999999999999998 799999999887632 1233344677864
No 53
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=99.43 E-value=2.7e-14 Score=154.44 Aligned_cols=114 Identities=26% Similarity=0.350 Sum_probs=93.2
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC--C--EEEeeeeeecCCCCCee
Q 003060 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC--G--AVIGRTFVISNSESPVW 115 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~--~--~~~~rT~vi~~t~nP~W 115 (852)
.|.|+|+|++|++|+++|. .|.+||||+|.+. + ....||++++++.||+|
T Consensus 151 ~~~l~v~v~~a~~L~~~d~--------------------------~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~w 204 (296)
T 1dqv_A 151 AGLLTVTIIKASNLKAMDL--------------------------TGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTY 204 (296)
T ss_dssp TTEEEEEEEEEESCCCCSS--------------------------SSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEE
T ss_pred cceeEEEEEEeecCCccCC--------------------------CCCCCcEEEEEEEeCCcCccceecceecCCCCCeE
Confidence 4889999999999999886 4568999999995 3 23459999999999999
Q ss_pred eeEEEEeecCCC---cEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCce
Q 003060 116 MQHFNVPVAHSA---AEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAV 180 (852)
Q Consensus 116 nE~F~~~v~~~~---~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~ 180 (852)
||+|.|++.... ..|.|+|||++.++ +++||++.|+++++.. ...++|++|+...+++...+..
T Consensus 205 ne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~-~~~~~W~~~~~~~~~~~~~w~~ 272 (296)
T 1dqv_A 205 NEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP-HGREHWAEMLANPRKPVEHWHQ 272 (296)
T ss_dssp EECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCH-HHHHHHHTSSSSSSSCSCSCCC
T ss_pred CceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEEEEECCccCCc-hhHHHHHHHHhCCCCceeEeee
Confidence 999999987543 46999999999987 8899999999986532 1467899998877776644433
No 54
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A
Probab=99.42 E-value=1.4e-13 Score=163.95 Aligned_cols=102 Identities=25% Similarity=0.364 Sum_probs=90.7
Q ss_pred eEEEEEEEEeeCCCC---CCccccccccccccccccccccccccCCCCCCCCcEEEEEECC--EEEeeeeeecCCCCCee
Q 003060 41 GNLDIWVKEAKNLPN---MDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG--AVIGRTFVISNSESPVW 115 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~--~~~~rT~vi~~t~nP~W 115 (852)
|.|+|+|++|++|++ +|. .|++||||+|.+.+ ....||+|+++++||+|
T Consensus 18 g~L~V~Vi~A~nL~~~~~~D~--------------------------~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvW 71 (749)
T 1cjy_A 18 HKFTVVVLRATKVTKGAFGDM--------------------------LDTPDPYVELFISTTPDSRKRTRHFNNDINPVW 71 (749)
T ss_dssp EEEEEEEEEEECCCSCHHHHH--------------------------HCCCCEEEEEECTTSTTCCEECCCCTTCSSCEE
T ss_pred cEEEEEEEEEECCCCccccCC--------------------------CCCcCeEEEEEEecCCCCeEecceEcCCCCCee
Confidence 899999999999998 664 35589999999984 24459999999999999
Q ss_pred eeEEEEeecCC-CcEEEEEEEecCCcCCceeeeEEEeeeeecCCCeeeeeeecc
Q 003060 116 MQHFNVPVAHS-AAEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPIL 168 (852)
Q Consensus 116 nE~F~~~v~~~-~~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~ 168 (852)
||+|.|.+... ...|+|+|||+|.+++++||++.|+|++|..|...+.|++|.
T Consensus 72 NEtF~F~v~~~~~~~L~~~V~D~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L~ 125 (749)
T 1cjy_A 72 NETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFN 125 (749)
T ss_dssp EEEEEEEECTTSCCBCEEEEEECCSSSCEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred eeEEEEEecCCCCCEEEEEEEECCCCCCceeEEEEEEHHHcCCCCceEEEEecC
Confidence 99999999874 478999999999888889999999999999888889999994
No 55
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=99.22 E-value=2.1e-11 Score=146.73 Aligned_cols=113 Identities=23% Similarity=0.354 Sum_probs=91.1
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC----E--EEeeeeeecC-CCC
Q 003060 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG----A--VIGRTFVISN-SES 112 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~----~--~~~rT~vi~~-t~n 112 (852)
.++|+|+|++|++|+.+ .+||||+|.+.+ . +..||+++++ +.|
T Consensus 649 ~~~L~V~Visaq~L~~~------------------------------~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglN 698 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK------------------------------QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMD 698 (816)
T ss_dssp CEEEEEEEEEEECCCSS------------------------------CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSC
T ss_pred ceEEEEEEEEcccCCCC------------------------------CCCCeEEEEEeCCCcccccceeeeEEecCCCCC
Confidence 37899999999999842 279999999954 1 3349999986 699
Q ss_pred CeeeeE-EEEe-ecCCC-cEEEEEEEecCCcCCceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEeec
Q 003060 113 PVWMQH-FNVP-VAHSA-AEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (852)
Q Consensus 113 P~WnE~-F~~~-v~~~~-~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~p 189 (852)
|+|||+ |.|+ |..+. ..|+|+|+|++ +++||++.|||+.|..|. ++++|.+..|++. ..++|.+.+....
T Consensus 699 PvWNE~~F~F~~v~~pela~Lrf~V~D~d---ddfiG~~~ipL~~L~~Gy---R~vpL~~~~g~~~-~~atLfv~i~~~~ 771 (816)
T 3qr0_A 699 PYYDEKVFVFKKVVLPDLAVVRIIVSEEN---GKFIGHRVMPLDGIKPGY---RHVPLRNESNRPL-GLASVFAHIVAKD 771 (816)
T ss_dssp CBCCCCCEEEEEESCGGGCEEEEEEEETT---SCEEEEEEEESTTCCCEE---EEEEEECTTSCEE-EEEEEEEEEEEEE
T ss_pred CeEcCceeEEccccCCCccEEEEEEEecC---CCeeeEEEEEHHHcCCcc---eEEEEeCCCCCCC-CceEEEEEEEEEe
Confidence 999997 9998 75444 68999999985 799999999999998763 6899999999865 3357777766543
No 56
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=99.22 E-value=1.9e-11 Score=147.98 Aligned_cols=112 Identities=24% Similarity=0.312 Sum_probs=90.4
Q ss_pred ceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC-----EEEeeee-eecC-CCC
Q 003060 40 HGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG-----AVIGRTF-VISN-SES 112 (852)
Q Consensus 40 ~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~-----~~~~rT~-vi~~-t~n 112 (852)
.|+|+|+|++|++|+.. ++||||+|.+.+ .+..||+ ++++ +.|
T Consensus 677 ~~~L~V~Visa~~L~~~------------------------------~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~N 726 (799)
T 2zkm_X 677 ATTLSITVISGQFLSER------------------------------SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSIN 726 (799)
T ss_dssp CEEEEEEEEEEESCCSS------------------------------CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSS
T ss_pred eeeEEEEEEeccccCcc------------------------------CCCcEEEEEEEecCCCcccceeecccccCCCCC
Confidence 48999999999999842 279999999942 1234999 8865 699
Q ss_pred Ceeee-EEEE-eecCCC-cEEEEEEEecCCcCCceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEee
Q 003060 113 PVWMQ-HFNV-PVAHSA-AEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (852)
Q Consensus 113 P~WnE-~F~~-~v~~~~-~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~ 188 (852)
|+||| +|.| .+..+. ..|+|.|+|++ +++||++.|||+.|..|. +|++|.+..|.+. ..+.|.+.+++.
T Consensus 727 PvWnEe~f~F~~v~~~el~~Lr~~V~D~d---~d~iG~~~ipl~~L~~G~---r~v~L~~~~g~~~-~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 727 PVWKEEPFVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSGY---HHLCLHSESNMPL-TMPALFIFLEMK 798 (799)
T ss_dssp CBCCCCCEEEEEESSGGGCEEEEEEEETT---TEEEEEEEEEGGGBCCEE---EEEEEECTTCCEE-EEEEEEEEEEEE
T ss_pred CeeecceEEEEEEccCCccEEEEEEEEeC---CCccceEeeehhhcCCCc---EEEeccCCCCCCC-CceEEEEEEEEE
Confidence 99999 7999 775444 68999999986 799999999999998663 6899999888865 346777777664
No 57
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=99.21 E-value=2e-11 Score=146.80 Aligned_cols=107 Identities=26% Similarity=0.422 Sum_probs=90.1
Q ss_pred eeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEEC----CEEEeeeeeecCCCCC
Q 003060 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSIC----GAVIGRTFVISNSESP 113 (852)
Q Consensus 38 ~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~----~~~~~rT~vi~~t~nP 113 (852)
+..+.|.|+|++|++|+.+|. .|++||||++.+. .....||+++++++||
T Consensus 169 ~~~~~L~V~v~~a~~L~~~d~--------------------------~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP 222 (674)
T 3pfq_A 169 IDREVLIVVVRDAKNLVPMDP--------------------------NGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNP 222 (674)
T ss_dssp ECSSEEEEEEEEEESCCCCST--------------------------TSSCCEEEEEEEESCSSCCSCEECCCCSSCSSC
T ss_pred eccceeeeeeecccccCCCCc--------------------------ccccCcccccccccCccccccccccccccccCC
Confidence 346899999999999999986 5669999999991 2223499999999999
Q ss_pred eeeeEEEEeecCC--CcEEEEEEEecCCcC-CceeeeEEEeeeeecCCCeeeeeeecccCC
Q 003060 114 VWMQHFNVPVAHS--AAEVHFVVKDNDFVG-SQIMGAVGIPVEKLCSGDKIEGAFPILNSS 171 (852)
Q Consensus 114 ~WnE~F~~~v~~~--~~~l~~~V~D~d~~~-~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~ 171 (852)
+|||+|.|.+... ...|.|+|||+|..+ +++||++.++++++..+. .+.|++|+.+.
T Consensus 223 ~wne~f~f~~~~~~~~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~~ 282 (674)
T 3pfq_A 223 EWNETFRFQLKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQE 282 (674)
T ss_dssp EEEEEEEEECCSTTTTCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCC-EEEEEECBCTT
T ss_pred CccceeeeecccCCccceeeeEEeecccccccccccccccchhhhccCC-cccceeecccc
Confidence 9999999998643 367999999999987 899999999999998554 58999997643
No 58
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=99.18 E-value=3.1e-11 Score=146.00 Aligned_cols=112 Identities=22% Similarity=0.302 Sum_probs=90.9
Q ss_pred eEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEECC-----EEEeeeeeecC-CCCCe
Q 003060 41 GNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSICG-----AVIGRTFVISN-SESPV 114 (852)
Q Consensus 41 G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l~~-----~~~~rT~vi~~-t~nP~ 114 (852)
.+|.|+|++|++|+.. .+||||+|.+.+ .+..||+|+.+ +.||+
T Consensus 725 ~~L~V~Visaq~L~~~------------------------------~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPv 774 (885)
T 3ohm_B 725 NALRVKVISGQFLSDR------------------------------KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPV 774 (885)
T ss_dssp EEEEEEEEEEESCCSS------------------------------CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCB
T ss_pred eEEEEEEEEeccCccc------------------------------CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCe
Confidence 4899999999999842 279999999954 22349999976 69999
Q ss_pred eee-EEEEe-ecCCC-cEEEEEEEecCCcCCceeeeEEEeeeeecCCCeeeeeeecccCCCCCCCCCceeeeeEEeec
Q 003060 115 WMQ-HFNVP-VAHSA-AEVHFVVKDNDFVGSQIMGAVGIPVEKLCSGDKIEGAFPILNSSRKPCKAGAVLSLSIQYTP 189 (852)
Q Consensus 115 WnE-~F~~~-v~~~~-~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~p 189 (852)
||| +|.|. |..+. ..|+|+|+|+| +++||++.|||+.|..|. ++++|.+..|++. ..++|.+.+.+..
T Consensus 775 WnEe~F~F~~V~~pela~Lrf~V~D~d---ddfiG~~~lpL~~L~~Gy---R~vpL~~~~g~~l-~~atLfv~i~~~~ 845 (885)
T 3ohm_B 775 WDEEPFDFPKVVLPTLASLRIAAFEEG---GKFVGHRILPVSAIRSGY---HYVCLRNEANQPL-CLPALLIYTEASD 845 (885)
T ss_dssp CCCCCEEEEEESCGGGCEEEEEEEETT---TEEEEEEEEETTTCCCEE---EEEEEECTTSCEE-EEEEEEEEEEEEE
T ss_pred eccceeEEeeEEcCCcCEEEEEEEcCC---ccEEeeEEEEHHHcCCCc---eEEEecCCCCCcc-CceEEEEEEEEEe
Confidence 999 69998 65443 68999999987 899999999999998763 5799999988864 4568888877653
No 59
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=99.12 E-value=9.7e-11 Score=138.59 Aligned_cols=118 Identities=19% Similarity=0.253 Sum_probs=87.4
Q ss_pred HHHHHHHHhccc-----eEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCCCCCCCCCh
Q 003060 547 TAYVKAIRAAQH-----FIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMWPEGITTSP 621 (852)
Q Consensus 547 ~ayl~aI~~A~~-----~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~peg~~~~~ 621 (852)
.+++++|++|++ .|+| ++||++... .++.+|++| +++|++|+|+++..+... ...
T Consensus 350 ~~v~~~I~~A~~dp~v~~I~i-t~Y~~~~d~----------------~I~~AL~~A--A~rGV~VrVLvd~~a~~~-~~~ 409 (687)
T 1xdp_A 350 EHVLELLRQASFDPSVLAIKI-NIYRVAKDS----------------RIIDSMIHA--AHNGKKVTVVVELQARFD-EEA 409 (687)
T ss_dssp HHHHHHHHHHHHCTTEEEEEE-EESSCCTTC----------------HHHHHHHHH--HHTTCEEEEEECTTCSST-TTT
T ss_pred hhHHHHHHHHhhCCcceEEEE-EeeeecCcH----------------HHHHHHHHH--HhcCCEEEEEECCCcccc-hhh
Confidence 468899999997 9999 999994321 355556555 468999999999865211 111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchHHHhhccCeeeEE
Q 003060 622 QIQRILYWQHKTMQMMYETIYKALVESGLQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQALAKKNRRFQIY 701 (852)
Q Consensus 622 ~~~~i~~~~~~t~~~~~~~~~~~L~~~Gv~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iy 701 (852)
+ ...++.|.++|+++++.. + ...
T Consensus 410 n----------------~~~~~~L~~aGV~V~~~~-------------------------~----------------~~k 432 (687)
T 1xdp_A 410 N----------------IHWAKRLTEAGVHVIFSA-------------------------P----------------GLK 432 (687)
T ss_dssp T----------------TTTTHHHHHHTCEEEECC-------------------------T----------------TCE
T ss_pred H----------------HHHHHHHHHCCCEEEEec-------------------------C----------------Ccc
Confidence 1 135678899999875310 0 125
Q ss_pred EEeeEEEEec----e---EEEEeccCCCCCCcCCCCCCceEEEeecCcc
Q 003060 702 IHSKGMIVDD----E---YVIIGSANINQRSLEGTRDTEIAMGAYQPRH 743 (852)
Q Consensus 702 vHSKlmIVDD----~---~~iIGSANln~RSm~g~~DsEi~v~i~d~~~ 743 (852)
+|+|++|||+ + |+.|||+|+|.||+. .++|+++.+.++..
T Consensus 433 ~H~Ki~VID~re~~~i~~~a~iGS~N~d~rs~~--~n~D~~l~i~~~~i 479 (687)
T 1xdp_A 433 IHAKLFLISRKENGEVVRYAHIGTGNFNEKTAR--LYTDYSLLTADARI 479 (687)
T ss_dssp ECCEEEEEEEEETTEEEEEEEEESSCSCTTGGG--TEEEEEEEECCHHH
T ss_pred ccceEEEEEeccCCeEEEEEEEeCCcCCcchhh--hcceEEEEEeCHHH
Confidence 9999999995 4 499999999999998 89999999998753
No 60
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=99.07 E-value=2e-10 Score=118.39 Aligned_cols=134 Identities=16% Similarity=0.016 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhccceEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCCCCCCCCChhh
Q 003060 544 SIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMWPEGITTSPQI 623 (852)
Q Consensus 544 sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~peg~~~~~~~ 623 (852)
...+.++++|.+||+.|+|+. |++++. +++.+|.+| ++|||+|+||+........ .
T Consensus 58 ~~~~~ii~~I~~A~~sI~i~~-Y~~~~~-----------------~I~~aL~~A--a~RGV~VRii~D~~~~~~~---~- 113 (220)
T 4gel_A 58 RNVAKIVEQIDRAVYSIDLAI-YTFTSL-----------------FLADSIKRA--LQRGVIIRIISDGEMVYSK---G- 113 (220)
T ss_dssp HHHHHHHHHHHTCSSEEEEEC-SCBCCH-----------------HHHHHHHHH--HHHTCEEEEECCTTTTTST---T-
T ss_pred HHHHHHHHHHHHhhhEEEEEE-EEeCCH-----------------HHHHHHHHH--HHcCCeEEEEEechhhhhh---H-
Confidence 456778999999999999997 555442 466666665 4689999999975432110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCceeeeccCCcc---ccCCCCCCCCCCCCCCCchHHHhhccCeeeE
Q 003060 624 QRILYWQHKTMQMMYETIYKALVESGLQNKYVPQDYLNFFCLGNRE---ALDGVDSSNAKDSTAANTPQALAKKNRRFQI 700 (852)
Q Consensus 624 ~~i~~~~~~t~~~~~~~~~~~L~~~Gv~~~~~p~~y~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 700 (852)
..+..|...|+.+.+.... ...|. .+++ .. .... ...
T Consensus 114 ----------------~~~~~~~~~~~~~~~~~~~------~~~h~K~~viD~-------------~~-~~~~----~~~ 153 (220)
T 4gel_A 114 ----------------SQISMLAQLGVPVRVPITT------NLMHNKFCIIDG-------------FE-RVEE----IRL 153 (220)
T ss_dssp ----------------CHHHHHHHTTCCEEECCSS------SCBCCCEEEESC-------------HH-HHHH----HHH
T ss_pred ----------------HHHHHHHhcCCcEEeeccc------ccccceeEEEcc-------------hh-cccc----ccc
Confidence 1234556666654321000 00000 0000 00 0000 012
Q ss_pred EEEeeEEEEeceEEEEeccCCCCCCcCCCCCCceEEEeecCcc
Q 003060 701 YIHSKGMIVDDEYVIIGSANINQRSLEGTRDTEIAMGAYQPRH 743 (852)
Q Consensus 701 yvHSKlmIVDD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~~ 743 (852)
..|.|++|+|+.++++||+||+.+|+. .|.|..+++.++..
T Consensus 154 ~~H~K~~v~D~~~v~~GS~N~t~~s~~--~N~E~~~vi~~~~~ 194 (220)
T 4gel_A 154 LRKLKFMRPCYSIVISGSVNWTALGLG--GNWENCIITADDKL 194 (220)
T ss_dssp HTTCSCCCCCCCEEEEESCCBSHHHHH--TSBEEEEEECCHHH
T ss_pred ccceeccccccceEEecCccccccccc--cCceEEEEEECHHH
Confidence 468888888899999999999999998 69999999988753
No 61
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Probab=99.05 E-value=1.9e-09 Score=98.29 Aligned_cols=90 Identities=19% Similarity=0.296 Sum_probs=75.9
Q ss_pred CCCcEEEEEECCEEEe---ee-eeecCCCCCeeeeEEEEeecCCCcEEEEEEEecCCcCCceeeeEEEeeeeec-----C
Q 003060 87 TSDPYVTVSICGAVIG---RT-FVISNSESPVWMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLC-----S 157 (852)
Q Consensus 87 ~~DpYv~v~l~~~~~~---rT-~vi~~t~nP~WnE~F~~~v~~~~~~l~~~V~D~d~~~~~~iG~~~i~l~~l~-----~ 157 (852)
..||||.|.++....+ +| ...++|..|+|||+|.-.+. ....|.|+|++... ++|+.++|++++|. .
T Consensus 26 ~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~-~Gr~l~i~Vfh~a~---~fvAn~tV~~edL~~~c~~~ 101 (126)
T 1yrk_A 26 ANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIY-EGRVIQIVLMRAAE---EPVSEVTVGVSVLAERCKKN 101 (126)
T ss_dssp SCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECC-TTCEEEEEEEEETT---EEEEEEEEEHHHHHHHHHTT
T ss_pred cCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeee-CCEEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccC
Confidence 4799999999987766 87 55566999999999999984 77899999997654 99999999999999 4
Q ss_pred CCeeeeeeecccCCCCCCCCCceeeeeEEee
Q 003060 158 GDKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (852)
Q Consensus 158 g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~ 188 (852)
+...+.|++| ++.|+|++.++|.
T Consensus 102 ~g~~e~WvdL--------eP~Gkl~~~i~~~ 124 (126)
T 1yrk_A 102 NGKAEFWLDL--------QPQAKVLMSVQYF 124 (126)
T ss_dssp TTEEEEEEEC--------BSSCEEEEEEEEE
T ss_pred CCceEEEEec--------ccCcEEEEEEEEe
Confidence 5678999999 3347899998875
No 62
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}
Probab=99.04 E-value=1.2e-09 Score=100.95 Aligned_cols=90 Identities=17% Similarity=0.330 Sum_probs=76.9
Q ss_pred CCCcEEEEEECCEEE---eee-eeecCCCCCeeeeEEEEeecCCCcEEEEEEEecCCcCCceeeeEEEeeeeec-----C
Q 003060 87 TSDPYVTVSICGAVI---GRT-FVISNSESPVWMQHFNVPVAHSAAEVHFVVKDNDFVGSQIMGAVGIPVEKLC-----S 157 (852)
Q Consensus 87 ~~DpYv~v~l~~~~~---~rT-~vi~~t~nP~WnE~F~~~v~~~~~~l~~~V~D~d~~~~~~iG~~~i~l~~l~-----~ 157 (852)
..||||.|.++.... |+| ...++|..|+|||+|.-.|. ....|.|+|++... ++|+.++|++++|. .
T Consensus 31 ~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~-~Gr~l~i~Vfh~a~---~fVAn~tV~~edL~~~ck~~ 106 (138)
T 2enj_A 31 AVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN-KGRVMQIIVKGKNV---DLISETTVELYSLAERCRKN 106 (138)
T ss_dssp CCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCC-SSCEEEEEEECSSC---SCCEEEEEESHHHHHHHHHT
T ss_pred cCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEE-CCeEEEEEEEcCCC---CeeeEEEEEHHHHHhhhccC
Confidence 479999999998877 899 66667999999999999984 67899999997544 99999999999999 4
Q ss_pred CCeeeeeeecccCCCCCCCCCceeeeeEEee
Q 003060 158 GDKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (852)
Q Consensus 158 g~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~ 188 (852)
+...+.|++| ++.|+|++.++|.
T Consensus 107 ~g~~e~WvdL--------eP~Gkl~v~i~~~ 129 (138)
T 2enj_A 107 NGKTEIWLEL--------KPQGRMLMNARYF 129 (138)
T ss_dssp TTCEEEEEEC--------BSSCEEEEEEEEC
T ss_pred CCceEEEEec--------ccCcEEEEEEEEE
Confidence 5577999999 3447899999985
No 63
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=98.84 E-value=7.5e-09 Score=117.94 Aligned_cols=124 Identities=23% Similarity=0.268 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhccceEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCCCCCCC-CChh
Q 003060 544 SIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMWPEGIT-TSPQ 622 (852)
Q Consensus 544 sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~peg~~-~~~~ 622 (852)
....+++++|++|+++|+|++.||.++. +..++..+|.+|.++++||+|+|+++...+... .+..
T Consensus 37 ~~~~~l~~~I~~A~~~I~i~~~~~~~d~--------------~g~~l~~aL~~aa~r~~GV~Vril~D~~~~~r~~~g~~ 102 (458)
T 3hsi_A 37 EFKTQIIELIRNAKKRIYVTALYWQKDE--------------AGQEILDEIYRVKQENPHLDVKVLIDWHRAQRNLLGAE 102 (458)
T ss_dssp HHHHHHHHHHHTCSSEEEEEESCBCSSH--------------HHHHHHHHHHHHHHHSTTCEEEEEEETTGGGSCCC---
T ss_pred HHHHHHHHHHHhcCCEEEEEEEEEecCc--------------HHHHHHHHHHHHHhcCCCCEEEEEEECccccccccccc
Confidence 5789999999999999999999998763 135677778777666779999999997431000 0000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCCcCCCCceeeec--cCCccccCCCCCCCCCCCCCCCchHHHhhccCee
Q 003060 623 IQRILYWQHKTMQMMYETIYKALVESG--LQNKYVPQDYLNFFC--LGNREALDGVDSSNAKDSTAANTPQALAKKNRRF 698 (852)
Q Consensus 623 ~~~i~~~~~~t~~~~~~~~~~~L~~~G--v~~~~~p~~y~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (852)
. . + ...+++..|+++| +++. + -+|. ++.++ .
T Consensus 103 ~--~--~-------~~~~~~~~L~~~g~nv~v~--~----~~f~~p~~~~~----------------------------~ 137 (458)
T 3hsi_A 103 K--S--A-------TNADWYCEQRQTYQLPDDP--N----MFFGVPINTRE----------------------------V 137 (458)
T ss_dssp ------C-------CHHHHHHHHHHHHTCTTCC--C----CEEEECSSSSG----------------------------G
T ss_pred c--c--c-------ccHHHHHHHHhhCCCceEe--e----eecCCcccccc----------------------------c
Confidence 0 0 0 0124677887777 6654 0 0111 01000 0
Q ss_pred eEEEEeeEEEEeceEEEEeccCCCCCCcC
Q 003060 699 QIYIHSKGMIVDDEYVIIGSANINQRSLE 727 (852)
Q Consensus 699 ~iyvHSKlmIVDD~~~iIGSANln~RSm~ 727 (852)
....|.|++||||++++.| +||+++++.
T Consensus 138 ~~r~H~Ki~viD~~v~~~G-~Ni~d~y~~ 165 (458)
T 3hsi_A 138 FGVLHVKGFVFDDTVLYSG-ASINNVYLH 165 (458)
T ss_dssp GCCEECCEEEETTEEEEES-CCBSTTTTT
T ss_pred cCcceeeEEEECCCEEEEe-eecCHHHhc
Confidence 1369999999999997777 999999986
No 64
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=98.56 E-value=9.2e-08 Score=110.91 Aligned_cols=137 Identities=13% Similarity=0.114 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHhccceEEEeeccc-cccCCCcccccccCCCCccHHHHHHHHHHHHHcCCC--ceEEEEecCCCCCCCC
Q 003060 543 MSIHTAYVKAIRAAQHFIYIENQYF-LGSSFNWDSHRDLGANNLIPMEIALKIANKIRANER--FAAYILIPMWPEGITT 619 (852)
Q Consensus 543 ~sI~~ayl~aI~~A~~~IYIEnqYF-i~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~g--v~V~IvlP~~peg~~~ 619 (852)
..+..+++++|++||++|+|+..+| ..+. +...+..+|.++. ++| |+|+|++...+.+...
T Consensus 65 ~~~~~~l~~~I~~Ak~~I~i~~y~~~~~d~--------------~g~~i~~aL~~aa--~rGp~V~Vril~D~~g~~~~~ 128 (506)
T 1v0w_A 65 KRLLAKMTENIGNATRTVDISTLAPFPNGA--------------FQDAIVAGLKESA--AKGNKLKVRILVGAAPVYHMN 128 (506)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEESSCCCHH--------------HHHHHHHHHHHHH--HTTCCEEEEEEEECCC--CCC
T ss_pred HHHHHHHHHHHHHhccEEEEEEeeccCCCh--------------HHHHHHHHHHHHH--hCCCCcEEEEEEeCccccccc
Confidence 3689999999999999999998663 4321 1345666666664 567 9999999875422111
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCceeeec--cCCccccCCCCCCCCCCCCCCCchHHHhhccCe
Q 003060 620 SPQIQRILYWQHKTMQMMYETIYKALVESGLQNKYVPQDYLNFFC--LGNREALDGVDSSNAKDSTAANTPQALAKKNRR 697 (852)
Q Consensus 620 ~~~~~~i~~~~~~t~~~~~~~~~~~L~~~Gv~~~~~p~~y~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (852)
.. ...+.+.|+++|+++. .++.+.. +.... .+
T Consensus 129 ~~----------------~~~~~~~L~~~g~~~~----~~~~~~~~~~~~~~--------------------------~~ 162 (506)
T 1v0w_A 129 VI----------------PSKYRDELTAKLGKAA----ENITLNVASMTTSK--------------------------TA 162 (506)
T ss_dssp CH----------------HHHHHHHHHHHHGGGG----GGEEEEEEEECSBT--------------------------TT
T ss_pred cC----------------CHHHHHHHHhccccee----ecCccccccccccC--------------------------Cc
Confidence 00 1135677777776542 1122110 00000 00
Q ss_pred eeEEEEeeEEEEeceEEEEeccCC-CCCCcCCC-CCCceEEEeecCc
Q 003060 698 FQIYIHSKGMIVDDEYVIIGSANI-NQRSLEGT-RDTEIAMGAYQPR 742 (852)
Q Consensus 698 ~~iyvHSKlmIVDD~~~iIGSANl-n~RSm~g~-~DsEi~v~i~d~~ 742 (852)
....|.|++|||++++++||+|| +++.+... .-.++.+.+..|.
T Consensus 163 -~~r~H~K~~ViD~~~a~~Gg~Nl~~d~y~~~~~~~~D~~v~i~G~~ 208 (506)
T 1v0w_A 163 -FSWNHSKILVVDGQSALTGGINSWKDDYLDTTHPVSDVDLALTGPA 208 (506)
T ss_dssp -TBCBCCCEEEETTTEEEEESCCCCHHHHTSSSSCCBEEEEEEESHH
T ss_pred -cccceeeEEEECCcEEEeeccccCccccccCCCCceEEEEEEECHH
Confidence 12689999999999999999998 65554310 2367888887653
No 65
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=98.14 E-value=4.6e-06 Score=98.19 Aligned_cols=119 Identities=13% Similarity=0.158 Sum_probs=85.7
Q ss_pred HHHHHHHHHhccc-----eEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCCCCCCCCC
Q 003060 546 HTAYVKAIRAAQH-----FIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMWPEGITTS 620 (852)
Q Consensus 546 ~~ayl~aI~~A~~-----~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~peg~~~~ 620 (852)
..+++++|++|++ .|.++ .|.+++.. .+..+|++| +++|++|+|++....-.. +.
T Consensus 354 f~~vi~~I~~A~~DP~V~sIk~t-lYr~~~ds----------------~Iv~ALi~A--A~rGv~V~vLvel~arfd-ee 413 (705)
T 2o8r_A 354 YDYVVRLLMEAAISPDVSEIRLT-QYRVAENS----------------SIISALEAA--AQSGKKVSVFVELKARFD-EE 413 (705)
T ss_dssp SHHHHHHHHHHHTCTTEEEEEEE-ESCCCSCC----------------HHHHHHHHH--HHTTCEEEEEECCCSCC----
T ss_pred HHHHHHHHHHhccCCCceEEEEE-EEEEcCCH----------------HHHHHHHHH--HHCCCEEEEEEeCCCCcc-hh
Confidence 4679999999999 99975 56665321 356666665 468999999998543111 00
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCCceeeeccCCccccCCCCCCCCCCCCCCCchHHHhhccCeeeE
Q 003060 621 PQIQRILYWQHKTMQMMYETIYKALVESGLQNKYVPQDYLNFFCLGNREALDGVDSSNAKDSTAANTPQALAKKNRRFQI 700 (852)
Q Consensus 621 ~~~~~i~~~~~~t~~~~~~~~~~~L~~~Gv~~~~~p~~y~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 700 (852)
.+ . ...+.|+++|+++.|. + . ..
T Consensus 414 ~n----i------------~wa~~Le~aGv~Vv~g---------~------~--------------------------~l 436 (705)
T 2o8r_A 414 NN----L------------RLSERMRRSGIRIVYS---------M------P--------------------------GL 436 (705)
T ss_dssp -C----H------------HHHHHHHHHTCEEEEC---------C------T--------------------------TC
T ss_pred hh----H------------HHHHHHHHCCCEEEEc---------c------C--------------------------CC
Confidence 11 1 3467899999987531 0 0 12
Q ss_pred EEEeeEEEEece---------EEEEeccCCCCCCcCCCCCCceEEEeecCcc
Q 003060 701 YIHSKGMIVDDE---------YVIIGSANINQRSLEGTRDTEIAMGAYQPRH 743 (852)
Q Consensus 701 yvHSKlmIVDD~---------~~iIGSANln~RSm~g~~DsEi~v~i~d~~~ 743 (852)
.+|+|++|||++ |+.+|+.|+|+.+.. .-+++++...++..
T Consensus 437 k~H~Ki~lIdrr~~~~g~~~~y~~igtGN~n~~tar--iy~D~~l~t~~~~i 486 (705)
T 2o8r_A 437 KVHAKTALILYHTPAGERPQGIALLSTGNFNETTAR--IYSDTTLMTANTDI 486 (705)
T ss_dssp CBCCCEEEEEECCCSSSCCCEEEEEESSCSSCCCSS--CEEEEEEEECCHHH
T ss_pred CceeEEEEEecccccCCceeEEEeccccceeeeEEE--EEeeeeeeecChHH
Confidence 589999999988 788999999999997 68899999887753
No 66
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=95.63 E-value=0.0094 Score=65.04 Aligned_cols=35 Identities=11% Similarity=-0.060 Sum_probs=29.8
Q ss_pred EEEEeceEEEEeccCC-C---CCCcCCCCCCceEEEeecCcc
Q 003060 706 GMIVDDEYVIIGSANI-N---QRSLEGTRDTEIAMGAYQPRH 743 (852)
Q Consensus 706 lmIVDD~~~iIGSANl-n---~RSm~g~~DsEi~v~i~d~~~ 743 (852)
++|+|++++++||+|. + .||+. .+.| ++.+.++.+
T Consensus 192 l~ivD~~~alv~~~~~~~~~~~rS~~--~~~e-aliv~~~~l 230 (342)
T 3qph_A 192 IGMTDGKEVVTIQNATFDSIGPPSFK--STYP-EIIFSQYSL 230 (342)
T ss_dssp EEEETTTEEEEECSSSCCSSCCCEEE--ECCH-HHHHHHHHH
T ss_pred EEEEECCEEEEecccccccccccccc--cccc-EEEEECHHH
Confidence 5999999999999998 3 49998 7888 888887753
No 67
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=95.35 E-value=0.026 Score=61.57 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHhccceEEEEEEecCceeEEEeCCCCchHHHHHHHHhhhcCCeEEEEE
Q 003060 250 SCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILA 307 (852)
Q Consensus 250 ~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a~rGV~VriLv 307 (852)
...+.+.+.|.+|+++|++..|. . .-..+.+.|.++++|||+|++++
T Consensus 119 ~I~~ri~eli~~A~~eI~i~~~~---~--------~l~~l~~~L~~a~~RGV~Vrvi~ 165 (342)
T 3qph_A 119 EAIEMFRESLYSAKNEVIVVTPS---E--------FFETIREDLIKTLERGVTVSLYI 165 (342)
T ss_dssp HHHHHHHHHHHHCSSEEEEEECH---H--------HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHhhheEEEEEeCH---H--------HHHHHHHHHHHHHhCCCEEEEEE
Confidence 56889999999999999999872 1 12577889999999999999997
No 68
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=94.38 E-value=0.049 Score=55.88 Aligned_cols=50 Identities=10% Similarity=0.004 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHhccceEEEEEEecCceeEEEeCCCCchHHHHHHHHhhhcCCeEEEEEeCC
Q 003060 250 SCWQDVYDAINQARRLIYITGWSVYHTVRLVRDGSNTLMLGDLLKIKSQEGVRVLILAWDD 310 (852)
Q Consensus 250 ~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~l~r~~~~~~~l~~lL~~~a~rGV~VriLvwD~ 310 (852)
...+.+.+.|++|+++|++..| .+.-..|.+.|++|++|||.|+|+++..
T Consensus 10 ~Ii~r~~e~I~~A~~el~lsi~-----------~e~l~~l~~~L~~A~~rGV~V~liv~~~ 59 (233)
T 2f5t_X 10 EAIEMFRESLYSAKNEVIVVTP-----------SEFFETIREDLIKTLERGVTVSLYIDKI 59 (233)
T ss_dssp HHHHHHHHHHHTCSSEEEEEEC-----------GGGHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred HHHHHHHHHHHHhhhEEEEEeC-----------HHHHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 5688999999999999999887 1234789999999999999999999643
No 69
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=86.29 E-value=2.2 Score=52.21 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=49.1
Q ss_pred eeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEE--CCEEEe---eeeeecCCCC
Q 003060 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSI--CGAVIG---RTFVISNSES 112 (852)
Q Consensus 38 ~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l--~~~~~~---rT~vi~~t~n 112 (852)
.+...|.|+|..+.++...+ .++-||++.+ ++..+. .|+.+....+
T Consensus 214 ~~~~~f~i~i~~~~~~~~~~-----------------------------~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~ 264 (940)
T 2wxf_A 214 SLEQPFSIELIEGRKVNADE-----------------------------RMKLVVQAGLFHGNEMLCKTVSSSEVNVCSE 264 (940)
T ss_dssp TCCSEEEEEEEEEECCCC--------------------------------CEEEEEEEEEETTEESSCCEECCCEESCSS
T ss_pred hcCCceEEEEEEecccCCCC-----------------------------CceEEEEEEEEECCEEccCceecccccCCCC
Confidence 45577999999999886321 2578998877 555443 3444444778
Q ss_pred CeeeeEEEEe--ecCC--CcEEEEEEEecC
Q 003060 113 PVWMQHFNVP--VAHS--AAEVHFVVKDND 138 (852)
Q Consensus 113 P~WnE~F~~~--v~~~--~~~l~~~V~D~d 138 (852)
|.|||-+.|+ +.+. .+.|.|+|++..
T Consensus 265 ~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~ 294 (940)
T 2wxf_A 265 PVWKQRLEFDISVCDLPRMARLCFALYAVV 294 (940)
T ss_dssp CEEEEEEEEEEEGGGCCTTCEEEEEEEEEC
T ss_pred cccceEEEcccccccCCcccEEEEEEEEec
Confidence 9999965555 4443 378999999853
No 70
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=85.31 E-value=1.5 Score=44.29 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=34.3
Q ss_pred EEEeeEEEE---eceEEEEeccCCCCCCcCCCCCCceEEEeecCc
Q 003060 701 YIHSKGMIV---DDEYVIIGSANINQRSLEGTRDTEIAMGAYQPR 742 (852)
Q Consensus 701 yvHSKlmIV---DD~~~iIGSANln~RSm~g~~DsEi~v~i~d~~ 742 (852)
.+|+|+... |...++|||.||..--|. .|-|+++.++++.
T Consensus 103 i~HaK~Yg~~~n~g~~LIV~SgNfT~pGms--QNvE~sllld~~T 145 (358)
T 2c1l_A 103 ILHAKLYGTSNNLGESLVVSSGNFTGPGMS--QNIEASLLLDNNT 145 (358)
T ss_dssp CBCCEEEEEEETTEEEEEEESCCBSTTTTT--TSBEEEEEECHHH
T ss_pred ecchhhhcccCCCceEEEEecCCccccccc--cceeEEEEEcCCC
Confidence 578888766 468899999999999997 8999999998764
No 71
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=83.12 E-value=2.6 Score=51.99 Aligned_cols=88 Identities=15% Similarity=0.142 Sum_probs=55.5
Q ss_pred eeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEE--CCEEEe---eeeeecCCCC
Q 003060 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSI--CGAVIG---RTFVISNSES 112 (852)
Q Consensus 38 ~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l--~~~~~~---rT~vi~~t~n 112 (852)
-+...+.|+|+.+.++.-.. ....+-||++.| |+..+. +|+.+ ...+
T Consensus 352 ~~~~~f~v~i~~~~~~n~~~---------------------------~~~~~~~V~~~l~hG~~~L~~~~~T~~~-~~~~ 403 (1091)
T 3hhm_A 352 VINSALRIKILCATYVNVNI---------------------------RDIDKIYVRTGIYHGGEPLCDNVNTQRV-PCSN 403 (1091)
T ss_dssp GCCSEEEEEEEEESCCCCCC---------------------------SSCCCCCEEEEEESSSCSSCCEECCCCC-CTTS
T ss_pred hCCCCEEEEEEEecCCCCCc---------------------------cccceEEEEEEEEECCEEccCceecccc-CCCC
Confidence 35567999999998875221 122578999888 443332 34433 2567
Q ss_pred CeeeeE--EEEeecCC--CcEEEEEEEecCCcC-----CceeeeEEEeee
Q 003060 113 PVWMQH--FNVPVAHS--AAEVHFVVKDNDFVG-----SQIMGAVGIPVE 153 (852)
Q Consensus 113 P~WnE~--F~~~v~~~--~~~l~~~V~D~d~~~-----~~~iG~~~i~l~ 153 (852)
|.|||- |.+.+.+. .+.|.|+|++....+ ...||.+.++|=
T Consensus 404 ~~Wne~l~f~i~i~dLPr~arL~~tl~~~~~~~~~~~~~~~lg~~n~~lf 453 (1091)
T 3hhm_A 404 PRWNEWLNYDIYIPDLPRAARLCLSICSVKGRKGAKEEHCPLAWGNINLF 453 (1091)
T ss_dssp CEEEEEEEEEEEGGGCCTTCEEEEEECCCCCCC-------CCEEEEEESB
T ss_pred CCCCeeEEecCccccCChhcEEEEEEEEecCccCcccccceeEEeeeeeE
Confidence 889995 45555543 378999999855421 236777777763
No 72
>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=78.17 E-value=5.5 Score=37.74 Aligned_cols=99 Identities=9% Similarity=0.093 Sum_probs=66.2
Q ss_pred CCc--EEEEEECCEEEeeeeeecCCCCCeeeeEEEEeecCCC--------cEEEEEEEecCCcCCceeeeEEEeeeeecC
Q 003060 88 SDP--YVTVSICGAVIGRTFVISNSESPVWMQHFNVPVAHSA--------AEVHFVVKDNDFVGSQIMGAVGIPVEKLCS 157 (852)
Q Consensus 88 ~Dp--Yv~v~l~~~~~~rT~vi~~t~nP~WnE~F~~~v~~~~--------~~l~~~V~D~d~~~~~~iG~~~i~l~~l~~ 157 (852)
.+| ||++++-......|-++. ..+|.+|-+-++.|.-.. ..+.+.+.......-..||++.|++.++..
T Consensus 40 ~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lELhqa~g~~~~tla~~~I~l~~lLe 118 (156)
T 2yrb_A 40 KEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEVHQAYSTEYETIAACQLKFHEILE 118 (156)
T ss_dssp SCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEEEEECSSCEEEEEEEEECCSHHHH
T ss_pred cCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEEEEeeCCCceEEEEEEEEhHHhhC
Confidence 356 555555444443676665 889999997666663321 356777766432224699999999999984
Q ss_pred C-CeeeeeeecccCCCCCCCCCceeeeeEEee
Q 003060 158 G-DKIEGAFPILNSSRKPCKAGAVLSLSIQYT 188 (852)
Q Consensus 158 g-~~~~~w~~L~~~~~~~~~~~g~I~l~l~f~ 188 (852)
. ..+..-.+|.+..|.. ..-|.|.++++..
T Consensus 119 ~~~~i~g~~~L~g~~g~~-~~~G~LeywiRL~ 149 (156)
T 2yrb_A 119 KSGRIFCTASLIGTKGDI-PNFGTVEYWFRLR 149 (156)
T ss_dssp CCSCEEEEEEECBSSSCC-TTSEEEEEEEEEE
T ss_pred cCCceEEEEEEEcCCCCc-ceEEEEEEEEEEe
Confidence 3 3466677888877732 2458999888876
No 73
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=78.02 E-value=4.1 Score=40.88 Aligned_cols=38 Identities=11% Similarity=0.374 Sum_probs=31.0
Q ss_pred eeeeeecCCCCCeeeeEEEEeecCCC---cEEEEEEEecCC
Q 003060 102 GRTFVISNSESPVWMQHFNVPVAHSA---AEVHFVVKDNDF 139 (852)
Q Consensus 102 ~rT~vi~~t~nP~WnE~F~~~v~~~~---~~l~~~V~D~d~ 139 (852)
.+|-|...+.+|.|+|+|.+.++-.. .-|.|+++....
T Consensus 79 ~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~ 119 (220)
T 3l4c_A 79 YKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSS 119 (220)
T ss_dssp EECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCC
T ss_pred EEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecc
Confidence 48888888999999999998876543 679999988654
No 74
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=74.11 E-value=8.9 Score=47.02 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=34.0
Q ss_pred CCcEEEEEE--CCEEEe--eeeeecCCCCCeeeeEEEEe--ecCC--CcEEEEEEEecC
Q 003060 88 SDPYVTVSI--CGAVIG--RTFVISNSESPVWMQHFNVP--VAHS--AAEVHFVVKDND 138 (852)
Q Consensus 88 ~DpYv~v~l--~~~~~~--rT~vi~~t~nP~WnE~F~~~--v~~~--~~~l~~~V~D~d 138 (852)
++-||++.| |+.... +|+-+..+.+|.|||-+.|+ +.+. .+.|.|+|++..
T Consensus 238 ~~~~V~~~l~~G~~~l~~~~t~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~ 296 (961)
T 1e7u_A 238 LTVFVEANIQYGQQVLCQRRTSPKPFTEEVLWNVWLEFSIKIKDLPKGALLNLQIYCGA 296 (961)
T ss_dssp EEEEEEEEEEETTEEEEEEECCCEECCSEEEEEEEEEEEEEGGGCCTTCEEEEEEEEEE
T ss_pred ceEEEEEEEEECCEEcccceeeccccCCCcccceeEEeccccccCCcccEEEEEEEecc
Confidence 577998777 565443 34444446789999965554 4443 378999999743
No 75
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=68.39 E-value=3.7 Score=50.90 Aligned_cols=72 Identities=14% Similarity=0.175 Sum_probs=47.4
Q ss_pred eeceEEEEEEEEeeCCCCCCccccccccccccccccccccccccCCCCCCCCcEEEEEE--CCEEEe---eeeeecCCCC
Q 003060 38 LLHGNLDIWVKEAKNLPNMDMFHKKIGDVFGKLNVKVTSKIESHLSDKITSDPYVTVSI--CGAVIG---RTFVISNSES 112 (852)
Q Consensus 38 ~l~G~L~v~I~~Ak~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~DpYv~v~l--~~~~~~---rT~vi~~t~n 112 (852)
.+...|.|+|..+.++...+ .++-||++.+ ++..++ .|+-+..+.+
T Consensus 350 ~~~~~f~i~i~~~~~~~~~~-----------------------------~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~ 400 (1092)
T 2y3a_A 350 DNNNPFQITLVKGNKLNTEE-----------------------------TVKVHVRAGLFHGTELLCKTVVSSEISGKND 400 (1092)
T ss_dssp CCCSEEEEEECCCCCCCCCS-----------------------------SCCCCCBCCEEETTEESSCCCBCCCCCSSSC
T ss_pred hcCCCEEEEEEEeccCCCCC-----------------------------CceEEEEEEEEECCEEccCceecccccCCCC
Confidence 45577899999988876321 2577887665 655543 3444444778
Q ss_pred CeeeeEEEEe--ecCC--CcEEEEEEEecC
Q 003060 113 PVWMQHFNVP--VAHS--AAEVHFVVKDND 138 (852)
Q Consensus 113 P~WnE~F~~~--v~~~--~~~l~~~V~D~d 138 (852)
|.|||-+.|+ +.+. .+.|.|+||+..
T Consensus 401 ~~Wnewl~f~i~~~dLPr~a~L~~ti~~~~ 430 (1092)
T 2y3a_A 401 HIWNEQLEFDINICDLPRMARLCFAVYAVL 430 (1092)
T ss_dssp CCCCEEEEEEEESSSCCTTCEEEEECCCC-
T ss_pred CccceeEEeCCccccCChhcEEEEEEEEec
Confidence 9999965554 4443 378999998853
No 76
>2f5t_X Archaeal transcriptional regulator TRMB; sugar-binding; HET: MAL; 1.45A {Thermococcus litoralis} SCOP: b.38.5.1 d.136.1.5
Probab=41.12 E-value=44 Score=33.76 Aligned_cols=50 Identities=10% Similarity=0.109 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhccceEEEeeccccccCCCcccccccCCCCccHHHHHHHHHHHHHcCCCceEEEEecCC
Q 003060 544 SIHTAYVKAIRAAQHFIYIENQYFLGSSFNWDSHRDLGANNLIPMEIALKIANKIRANERFAAYILIPMW 613 (852)
Q Consensus 544 sI~~ayl~aI~~A~~~IYIEnqYFi~~~~~~~~~~~~~~~n~i~~~ia~~ia~~~~~~~gv~V~IvlP~~ 613 (852)
.|.+-..++|++|++.|++.- +... -.++...|.+| .++|+.|+|++...
T Consensus 10 ~Ii~r~~e~I~~A~~el~lsi----~~e~--------------l~~l~~~L~~A--~~rGV~V~liv~~~ 59 (233)
T 2f5t_X 10 EAIEMFRESLYSAKNEVIVVT----PSEF--------------FETIREDLIKT--LERGVTVSLYIDKI 59 (233)
T ss_dssp HHHHHHHHHHHTCSSEEEEEE----CGGG--------------HHHHHHHHHHH--HHTTCEEEEEESSC
T ss_pred HHHHHHHHHHHHhhhEEEEEe----CHHH--------------HHHHHHHHHHH--HHCCCEEEEEEcCC
Confidence 688889999999999999943 2211 12344445544 47899999999753
No 77
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=29.02 E-value=16 Score=41.81 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=23.9
Q ss_pred cccCcccEEEEecCCCCCcccEEEEEcccccCCCccC
Q 003060 365 IYTHHQKTVVVDADAGQFKRKIIAFVGGLDLCKGRYD 401 (852)
Q Consensus 365 ~~~hHqK~vVVD~~~~~~~~~~vafvGG~nl~~~r~D 401 (852)
+.+||-|++|.=.+.+ .....|-..||...-|.
T Consensus 178 fGthHSKmmlL~y~dg----~lRVVI~TANLi~~DW~ 210 (544)
T 1q32_A 178 FASHHTKLIINFYDNG----ECKIFLPSNNFTSMETN 210 (544)
T ss_dssp TCCBCCCEEEEEESTT----EEEEEEESSCBSHHHHH
T ss_pred CCCCCceeEEEEecCC----CEEEEEeCCCCChHHhc
Confidence 4699999999976421 14667788899876564
No 78
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=25.06 E-value=39 Score=37.83 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=0.0
Q ss_pred EeeEEEEec------eEEEEeccCC----------CCCCcCCCCCCceEEEe
Q 003060 703 HSKGMIVDD------EYVIIGSANI----------NQRSLEGTRDTEIAMGA 738 (852)
Q Consensus 703 HSKlmIVDD------~~~iIGSANl----------n~RSm~g~~DsEi~v~i 738 (852)
|.|+.+-=+ .|+++||||| |...+.- +|.|++|++
T Consensus 349 HiKty~r~~~~~~~~~W~lltSaNLSkaAWG~~~k~~~~l~I-~nyElGVl~ 399 (464)
T 1jy1_A 349 HIKTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMI-RSYELGVLF 399 (464)
T ss_dssp CCEEEEEECTTSSEEEEEEEESCCBSHHHHCEEETTTTEEEE-CSBEEEEEE
T ss_pred ceeeEEecCCCCCeecEEEEccccCCHHHhCccccCCCceeE-eeeeeeEEE
Done!