Your job contains 1 sequence.
>003062
MFDPSHTVCSFIQSRGRARMQNSDYLLMLKRYFKPTPKFDINKEMGICTLYLPNNCPIQT
VIAQGNIKTLKQTACLEACKKLHQIGALTDNLLPDVVVEEHDAQKHGNEPYDAEHPIYFP
PELVNQCPQDTKITYHCYLIELKQNFNYDIPAHDIVLAVRTELESEIKKVNFDLEVDRGR
LTVNLKHLGKIQLTPDKVLLCRRFQIALFRVIMDHNLDKLNEILKGLWLRDNLEIDYLLL
PASEQSIDWEPVASLSFPCDIGLKHHKNCSTMSNARVVQTKSGPLCTCMIYNSVVCTPHS
GQIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLCFDQELLLNGRRIFHAQNY
LSKCRQEKQREPSKISFELPPELCRIIMGPMSLSTFYSFTFVPSIMHRLQSLLLAVNLKN
MLLDHCMQNVTIPTSKVLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHE
GLLSVKKDRIISNAALCKLGCDHKLPGFIRTEPFDPKMWMIPGDNSGSYELNDHSLFNER
KIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVPYERQFQVQ
AERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVY
LYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERL
SLESTFGWESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETMRLQ
PARELNEYCQKHHFSMKKTVAPRINGKAAVTVEVHANGTLFKHTHADADKETAKKVASKE
VLKSLKASFPGT
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 003062
(852 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2097705 - symbol:DCL2 "dicer-like 2" species:3... 2309 2.6e-250 2
UNIPROTKB|A7LFZ6 - symbol:DCL4 "Endoribonuclease Dicer ho... 851 4.1e-109 4
UNIPROTKB|Q8LMR2 - symbol:DCL1 "Endoribonuclease Dicer ho... 509 7.4e-84 4
TAIR|locus:2149259 - symbol:DCL4 "dicer-like 4" species:3... 427 7.1e-73 3
ZFIN|ZDB-GENE-030131-3445 - symbol:dicer1 "Dicer1, Dcr-1 ... 395 2.4e-57 6
UNIPROTKB|A0MQH0 - symbol:DICER1 "Endoribonuclease Dicer"... 389 4.6e-57 6
UNIPROTKB|E9PU15 - symbol:Dicer1 "Protein Dicer1" species... 388 4.6e-57 6
UNIPROTKB|F1NJX0 - symbol:DICER1 "Endoribonuclease Dicer"... 391 5.5e-57 6
UNIPROTKB|Q25BN1 - symbol:DICER1 "Endoribonuclease Dicer"... 391 5.5e-57 6
MGI|MGI:2177178 - symbol:Dicer1 "dicer 1, ribonuclease ty... 390 7.1e-57 6
UNIPROTKB|B3DLA6 - symbol:dicer1 "Endoribonuclease Dicer"... 386 1.5e-56 6
UNIPROTKB|Q9UPY3 - symbol:DICER1 "Endoribonuclease Dicer"... 385 1.7e-56 6
UNIPROTKB|F1NP11 - symbol:DICER1 "Endoribonuclease Dicer"... 391 1.2e-55 6
UNIPROTKB|E2RIN4 - symbol:DICER1 "Uncharacterized protein... 386 4.1e-52 5
UNIPROTKB|B3KRG4 - symbol:DICER1 "Endoribonuclease Dicer"... 385 5.5e-51 3
FB|FBgn0039016 - symbol:Dcr-1 "Dicer-1" species:7227 "Dro... 354 2.8e-50 6
UNIPROTKB|F1MCQ5 - symbol:DICER1 "Endoribonuclease Dicer"... 385 4.3e-48 5
UNIPROTKB|Q6TUI4 - symbol:DICER1 "Endoribonuclease Dicer"... 382 3.1e-47 5
WB|WBGene00000939 - symbol:dcr-1 species:6239 "Caenorhabd... 338 6.8e-46 5
RGD|1309381 - symbol:Dicer1 "dicer 1, ribonuclease type I... 385 3.6e-41 2
FB|FBgn0034246 - symbol:Dcr-2 "Dicer-2" species:7227 "Dro... 241 7.0e-37 6
POMBASE|SPCC188.13c - symbol:dcr1 "dicer" species:4896 "S... 381 1.6e-32 2
TAIR|locus:504955425 - symbol:RTL1 "RNAse II-like 1" spec... 331 7.3e-29 1
ASPGD|ASPL0000041548 - symbol:dclB species:162425 "Emeric... 293 8.7e-27 4
TAIR|locus:2092409 - symbol:RTL2 "RNAse THREE-like protei... 306 3.5e-26 1
UNIPROTKB|A4RHU9 - symbol:DCL2 "Dicer-like protein 2" spe... 264 8.0e-23 4
TAIR|locus:2153333 - symbol:RTL3 "RNAse THREE-like protei... 262 1.1e-18 1
UNIPROTKB|I3L6Y9 - symbol:DICER1 "Uncharacterized protein... 184 1.2e-16 5
TIGR_CMR|CHY_1444 - symbol:CHY_1444 "ribonuclease III" sp... 164 1.6e-14 2
TIGR_CMR|CJE_1807 - symbol:CJE_1807 "ribonuclease III" sp... 168 1.2e-13 2
TIGR_CMR|NSE_0918 - symbol:NSE_0918 "ribonuclease III" sp... 153 1.7e-12 2
UNIPROTKB|P0A7Y0 - symbol:rnc "RNase III" species:83333 "... 136 4.4e-12 2
TIGR_CMR|BA_3987 - symbol:BA_3987 "ribonuclease III" spec... 160 1.0e-11 2
TIGR_CMR|CBU_1503 - symbol:CBU_1503 "ribonuclease III" sp... 138 9.8e-10 2
TIGR_CMR|CPS_4122 - symbol:CPS_4122 "ribonuclease III" sp... 150 1.1e-09 2
TIGR_CMR|APH_1149 - symbol:APH_1149 "ribonuclease III" sp... 121 3.2e-09 2
DICTYBASE|DDB_G0268410 - symbol:drnB "putative RNase III"... 155 4.4e-09 4
UNIPROTKB|H0YJZ6 - symbol:DICER1 "Endoribonuclease Dicer"... 108 6.2e-09 3
UNIPROTKB|Q9KPB2 - symbol:rnc "Ribonuclease 3" species:24... 128 1.1e-08 2
TIGR_CMR|VC_2461 - symbol:VC_2461 "ribonuclease III" spec... 128 1.1e-08 2
TIGR_CMR|SO_1348 - symbol:SO_1348 "ribonuclease III" spec... 138 1.2e-08 2
TIGR_CMR|ECH_1054 - symbol:ECH_1054 "ribonuclease III" sp... 144 8.1e-08 2
DICTYBASE|DDB_G0274077 - symbol:drnA-2 "putative RNAse II... 123 2.1e-07 4
DICTYBASE|DDB_G0273051 - symbol:drnA-1 "putative RNAse II... 123 2.1e-07 4
UNIPROTKB|Q61XX9 - symbol:drsh-1 "Ribonuclease 3" species... 122 2.4e-07 4
UNIPROTKB|P66666 - symbol:rnc "Ribonuclease 3" species:17... 123 1.3e-06 2
TIGR_CMR|DET_1025 - symbol:DET_1025 "ribonuclease III" sp... 127 1.5e-06 2
UNIPROTKB|F1PJL5 - symbol:DROSHA "Uncharacterized protein... 122 2.1e-06 3
UNIPROTKB|F1NQC9 - symbol:DROSHA "Uncharacterized protein... 126 1.4e-05 5
UNIPROTKB|F1LQY5 - symbol:F1LQY5 "Uncharacterized protein... 122 2.7e-05 4
FB|FBgn0026722 - symbol:drosha "drosha" species:7227 "Dro... 120 2.7e-05 5
UNIPROTKB|Q9NRR4 - symbol:DROSHA "Ribonuclease 3" species... 122 4.9e-05 4
TIGR_CMR|GSU_2228 - symbol:GSU_2228 "ribonuclease III" sp... 126 5.1e-05 1
UNIPROTKB|F1SP38 - symbol:DROSHA "Uncharacterized protein... 122 6.3e-05 5
UNIPROTKB|E1BGY0 - symbol:DROSHA "Uncharacterized protein... 122 7.4e-05 5
MGI|MGI:1261425 - symbol:Drosha "drosha, ribonuclease typ... 122 9.4e-05 4
UNIPROTKB|E9PTR3 - symbol:E9PTR3 "Uncharacterized protein... 122 9.4e-05 4
ZFIN|ZDB-GENE-070209-23 - symbol:rnasen "ribonuclease typ... 125 0.00019 5
WB|WBGene00009163 - symbol:drsh-1 species:6239 "Caenorhab... 110 0.00020 3
UNIPROTKB|O01326 - symbol:drsh-1 "Ribonuclease 3" species... 110 0.00020 3
>TAIR|locus:2097705 [details] [associations]
symbol:DCL2 "dicer-like 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010216 "maintenance of DNA methylation"
evidence=IMP] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA;IMP] [GO:0051607 "defense response to
virus" evidence=RCA;IMP] [GO:0035196 "production of miRNAs involved
in gene silencing by miRNA" evidence=IGI;RCA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0007267 "cell-cell signaling"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0010014 "meristem initiation" evidence=RCA]
[GO:0010050 "vegetative phase change" evidence=RCA] [GO:0010073
"meristem maintenance" evidence=RCA] [GO:0016569 "covalent
chromatin modification" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0051607 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0010267 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AC012328 GO:GO:0010216 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ479970
EMBL:DQ479971 IPI:IPI00530074 IPI:IPI00852241 RefSeq:NP_001078101.1
RefSeq:NP_001189798.1 RefSeq:NP_566199.4 UniGene:At.43488
ProteinModelPortal:Q3EBC8 SMR:Q3EBC8 IntAct:Q3EBC8 STRING:Q3EBC8
PaxDb:Q3EBC8 PRIDE:Q3EBC8 EnsemblPlants:AT3G03300.1
EnsemblPlants:AT3G03300.3 GeneID:821300 KEGG:ath:AT3G03300
TAIR:At3g03300 HOGENOM:HOG000006099 InParanoid:Q3EBC8 OMA:TAIVLES
PhylomeDB:Q3EBC8 ProtClustDB:CLSN2694055 Genevestigator:Q3EBC8
Uniprot:Q3EBC8
Length = 1388
Score = 2309 (817.9 bits), Expect = 2.6e-250, Sum P(2) = 2.6e-250
Identities = 456/821 (55%), Positives = 582/821 (70%)
Query: 32 YFKPTPKFDINKEMGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLHQIGALTDN 91
YFKP P+FD+NK+ G CTLYLP +CP++ V A+ N K LKQ CL+AC +LH++GAL+D+
Sbjct: 575 YFKPAPRFDVNKDQGSCTLYLPKSCPVKEVKAEANNKVLKQAVCLKACIQLHKVGALSDH 634
Query: 92 LLPDVVVEEHDAQKHGNEPYDAEHPIYFPPELVNQCPQDTKITYHCYLIELKQNFNYDIP 151
L+PD+VV E +QK Y+ E P YFPPELV+Q + TYH YLI +K N +
Sbjct: 635 LVPDMVVAETVSQKLEKIQYNTEQPCYFPPELVSQFSAQPETTYHFYLIRMKPNSPRNFH 694
Query: 152 AHDIVLAVRTELESEIKKVNFDLEVDRGRLTVNLKHLGKIQLTPDKVLLCRRFQIALFRV 211
+D++L R LE +I +F LE RG + V L ++G LT ++VL CRRFQI LFRV
Sbjct: 695 LNDVLLGTRVVLEDDIGNTSFRLEDHRGTIAVTLSYVGAFHLTQEEVLFCRRFQITLFRV 754
Query: 212 IMDHNLDKLNEILKGLWLRDNLEIDYLLLPAS---EQS-IDWEPVASLSFPCDIGLKHHK 267
++DH+++ L E L GL LRD + +DYLL+P++ E S IDWE + S++ L+ H+
Sbjct: 755 LLDHSVENLMEALNGLHLRDGVALDYLLVPSTHSHETSLIDWEVIRSVNLTSHEVLEKHE 814
Query: 268 NCSTMSNARVVQTKSGPLCTCMIYNSVVCTPHSGQIYYITGVLGHLNANSLFTRNDGGAI 327
NCST +R++ TK G CTC++ N++V TPH+G +Y GVL +LN NSL T+ + G
Sbjct: 815 NCSTNGASRILHTKDGLFCTCVVQNALVYTPHNGYVYCTKGVLNNLNGNSLLTKRNSGDQ 874
Query: 328 TYKKHYEERYGIQLCFDQELLLNGRRIFHAQNYLSKCRQEKQREPSKISFELPPELCRII 387
TY ++YEER+GIQL F E LLNGR IF +YL +++K++E + ELPPELC +I
Sbjct: 875 TYIEYYEERHGIQLNFVDEPLLNGRHIFTLHSYLHMAKKKKEKEHDREFVELPPELCHVI 934
Query: 388 MGPMSLSTFYSFTFVPSIMHRLQSXXXXXXXXXXXXDHCMQNVTIPTSKVLEAITTKKCQ 447
+ P+S+ YS+TF+PS+M R++S + V IPT KVLEAITTKKC+
Sbjct: 935 LSPISVDMIYSYTFIPSVMQRIESLLIAYNLKKS-----IPKVNIPTIKVLEAITTKKCE 989
Query: 448 EGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPG 507
+ FHLESLETLGDSFLKYA QQLF+ HHEGLLS KKD +ISN LC+ GC KL G
Sbjct: 990 DQFHLESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQG 1049
Query: 508 FIRTEPFDPKMWMIPGDNSGSYELNDHSLFNERKIYVTGRKKVKSKTVADVVEALIGAFL 567
FIR E F+PK WM+PG +S +Y L + +L R IYV R+ +K K+VADVVE+LIGA+L
Sbjct: 1050 FIRDECFEPKGWMVPGQSSAAYSLVNDTLPESRNIYVASRRNLKRKSVADVVESLIGAYL 1109
Query: 568 STGGENVGLIFLDRIGIKVDFVNVPYERQFQVQAERLVNVRHLESLLNYSFRDPSLLVEA 627
S GGE L+F++ +GIKVDF +R +QAE+LVNV ++ESLLNYSF D SLLVEA
Sbjct: 1110 SEGGELAALMFMNWVGIKVDFTTTKIQRDSPIQAEKLVNVGYMESLLNYSFEDKSLLVEA 1169
Query: 628 LTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYA 687
LTHGSYM+PEIPRCYQRLEFLGD+VLDYLIT +LY+KYP LSPG LTDMRSASVNN+CYA
Sbjct: 1170 LTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYA 1229
Query: 688 LSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTFGWESETSFPKALGDIIESLSG 747
L +VK LHKHIL+AS L+K I+ TV FE+ SL+STFGWES+ SFPK LGD+IESL+G
Sbjct: 1230 LVAVKANLHKHILYASHHLHKHISRTVSEFEQSSLQSTFGWESDISFPKVLGDVIESLAG 1289
Query: 748 AIFVDSGCNKEVVFESIRPLLEPMITPETMRLQPARELNEYCQKHHFSMKKTVAPRINGK 807
AIFVDSG NKEVVF SI+PLL MITPET++L P REL E CQK F + K A +
Sbjct: 1290 AIFVDSGYNKEVVFASIKPLLGCMITPETVKLHPVRELTELCQKWQFELSK--AKDFD-- 1345
Query: 808 AAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKAS 848
+ TVEV A F HT +DK+ AKK+A KEVL LK S
Sbjct: 1346 -SFTVEVKAKEMSFAHTAKASDKKMAKKLAYKEVLNLLKNS 1385
Score = 125 (49.1 bits), Expect = 2.6e-250, Sum P(2) = 2.6e-250
Identities = 22/29 (75%), Positives = 27/29 (93%)
Query: 2 FDPSHTVCSFIQSRGRARMQNSDYLLMLK 30
FDP+ +CSFIQSRGRARMQNSDYL+M++
Sbjct: 473 FDPASNICSFIQSRGRARMQNSDYLMMVE 501
>UNIPROTKB|A7LFZ6 [details] [associations]
symbol:DCL4 "Endoribonuclease Dicer homolog 4"
species:39947 "Oryza sativa Japonica Group" [GO:0009944 "polarity
specification of adaxial/abaxial axis" evidence=IMP] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IDA] [GO:0010492 "maintenance of shoot apical meristem
identity" evidence=IMP] [GO:0048608 "reproductive structure
development" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010492 GO:GO:0010267 EMBL:AL606607 EMBL:AP008210
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009944
GO:GO:0008026 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 HOGENOM:HOG000083706
EMBL:EU009924 EMBL:AB353922 EMBL:AK066586 RefSeq:NP_001053278.1
UniGene:Os.27988 GeneID:4336362 KEGG:osa:4336362 Gramene:A7LFZ6
ProtClustDB:CLSN2694920 GO:GO:0048608 Uniprot:A7LFZ6
Length = 1657
Score = 851 (304.6 bits), Expect = 4.1e-109, Sum P(4) = 4.1e-109
Identities = 246/734 (33%), Positives = 378/734 (51%)
Query: 157 LAVRTELESEIKKVNFDLEVDRGRLT-VNLKHLGKIQLTPDKVLLCRRFQIALFRVIMDH 215
L V L E + + DL + RGR+ +KHLGKI +K++L +FQ ++++D
Sbjct: 739 LFVINPLPVEAETLQVDLHLARGRIVKAGIKHLGKIAFEKEKMMLAHKFQEMCLKILLDR 798
Query: 216 NLDKLNEILKGLWLRD-NLEID---YLLLPASEQS------IDWEPVAS-LSFPC--D-I 261
+ + G D LEI+ YLLLP ++ IDW V LS P D I
Sbjct: 799 SEFTSPHVKLG---NDVTLEINSTFYLLLPIKQKCYGDRFMIDWPAVERCLSSPIFKDPI 855
Query: 262 GLKHHKNCSTMSNARVVQTKSGPLCTCMIYNSVVCTPHSGQIYYITGVLGHLNANSLFTR 321
+ H + S+ + R++ G + SVV +PH+ +++ G+L +NA S
Sbjct: 856 DVSVHASYSSNESLRLLD---GIFSKTDVVGSVVFSPHNNIFFFVDGILDEINAWS---- 908
Query: 322 NDGGAITYKKHYEERYGIQLCFDQELLLNGRRIFHAQNYLS----KCRQEKQREPSKISF 377
GA TY +H++ER+ I+L ++ LL ++IF+ +N L + + + RE +
Sbjct: 909 EHSGA-TYAEHFKERFRIELSHPEQPLLKAKQIFNLRNLLHNRLPETTESEGRELLEHFV 967
Query: 378 ELPPELCRIIMGPMSLSTFYSFTFVPSIMHRLQSXXXXXXXXXXXXDHCMQNVTIPTSKV 437
ELPPELC + + S S + +PS+M+RL++ + I S +
Sbjct: 968 ELPPELCSLKVIGFSKDMGSSLSLLPSLMYRLENLLVAIELKDVMLSSFPEASQISASGI 1027
Query: 438 LEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALC 497
LEA+TT+KC E LE E LGD+FLKY + F TY+ EG L+ ++ +++N+ L
Sbjct: 1028 LEALTTEKCLERISLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLY 1087
Query: 498 KLGCDHKLPGFIRTEPFDPKMWMIPGDNSGSYELNDHSL-FNERKIYVTGRKK-----VK 551
+L KL +IR + F+P + PG D + ++ I+ R+ +
Sbjct: 1088 ELSIRKKLQVYIRDQQFEPTQFFAPGRPCKVVCNTDVEVRLHQMDIHPDNRENCNLRCTR 1147
Query: 552 S------KTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVPYERQFQVQAERLV 605
S K +ADVVE+LIGAFL GG FL IGI VDF N P ++V +
Sbjct: 1148 SHHWLHRKVIADVVESLIGAFLVEGGFKAAFAFLHWIGIDVDFNN-P--ALYRVLDSSSI 1204
Query: 606 NVRHLESLLNYSFRDPSLLVEAL----THGSYML-----PEIPR----CYQRLEFLGDAV 652
N+ SL++Y+ D + L E + H +L P + CYQRLEFLGDAV
Sbjct: 1205 NL----SLMDYT--DIAGLEELIGYKFKHKGLLLQAFVHPSFSQHSGGCYQRLEFLGDAV 1258
Query: 653 LDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINI 712
L+Y+IT YLY+ YP + PG +TD+RS +V ND A ++V+ +HKH++ S L I+
Sbjct: 1259 LEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAIS- 1317
Query: 713 TVDSFERLSLESTFGWESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMI 772
+ + +LS S E + PKALGDI+ES GA+ +DSG N V++ + LL+P++
Sbjct: 1318 KFEMYVKLS-NSEKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLLKPVL 1376
Query: 773 TPETMRLQPARELNEYCQKHHFSMKKTVAPRINGKAAVTVEVHANGTLFKHTHADADKET 832
T M P REL E CQ H F + + +G+ V VEV+ + T A+ + +
Sbjct: 1377 TFANMHTNPMRELRELCQCHGFELGLPKPMKADGEYHVKVEVNIKSKIIICTAANRNSKA 1436
Query: 833 AKKVASKEVLKSLK 846
A+K A++E L LK
Sbjct: 1437 ARKFAAQETLSKLK 1450
Score = 182 (69.1 bits), Expect = 4.1e-109, Sum P(4) = 4.1e-109
Identities = 71/236 (30%), Positives = 111/236 (47%)
Query: 32 YFKPTPKFD-INKEMGI-CTLYLPNNCPIQTVIAQGNIKT--LKQTACLEACKKLHQIGA 87
+F P+P F I+ GI C L LP N + Q + K+ ACL+AC KLH++GA
Sbjct: 601 FFTPSPVFFYIDGIEGIICRLILPPNAAFRQADGQPCLSKDEAKRDACLKACVKLHKLGA 660
Query: 88 LTDNLLPD-------VVVEEHDAQ-KHGNEPYDAE-HPIYFPPELV-NQCPQDTKITYHC 137
LTD LLP V V + + K ++ E H + P L + D+ H
Sbjct: 661 LTDFLLPGPGSRKNKVSVTNNSSNNKVEDDSLREELHEMLIPAVLKPSGLKLDSLSNLHF 720
Query: 138 YLIE---LKQNFNYDIPAHDIVLAVRTELESEIKKVNFDLEVDRGRLT-VNLKHLGKIQL 193
Y ++ + ++ Y + L V L E + + DL + RGR+ +KHLGKI
Sbjct: 721 YYVKFIPIPEDRRYQM----FGLFVINPLPVEAETLQVDLHLARGRIVKAGIKHLGKIAF 776
Query: 194 TPDKVLLCRRFQIALFRVIMDHNLDKLNEILKGLWLRD-NLEID---YLLLPASEQ 245
+K++L +FQ ++++D + + G D LEI+ YLLLP ++
Sbjct: 777 EKEKMMLAHKFQEMCLKILLDRSEFTSPHVKLG---NDVTLEINSTFYLLLPIKQK 829
Score = 93 (37.8 bits), Expect = 4.1e-109, Sum P(4) = 4.1e-109
Identities = 19/30 (63%), Positives = 23/30 (76%)
Query: 2 FDPSHTVCSFIQSRGRARMQNSDYLLMLKR 31
FD TV SFIQSRGRARM S Y+++L+R
Sbjct: 502 FDLPETVASFIQSRGRARMTKSKYVVLLER 531
Score = 41 (19.5 bits), Expect = 4.1e-109, Sum P(4) = 4.1e-109
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 800 VAPRINGKAAVTVEVHANGTLFK 822
V I G +A +E H++G L K
Sbjct: 1606 VVVEIKGASATLLECHSDGKLQK 1628
>UNIPROTKB|Q8LMR2 [details] [associations]
symbol:DCL1 "Endoribonuclease Dicer homolog 1"
species:39947 "Oryza sativa Japonica Group" [GO:0007275
"multicellular organismal development" evidence=IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
Pfam:PF00035 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 Gene3D:3.30.160.20
EMBL:DP000009 EMBL:AP008209 GO:GO:0003725 GO:GO:0090305
GO:GO:0004386 SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM000140 EMBL:AC105363 RefSeq:NP_001048796.2
UniGene:Os.13488 HSSP:P66666 ProteinModelPortal:Q8LMR2 PRIDE:Q8LMR2
EnsemblPlants:LOC_Os03g02970.1 GeneID:4331440
KEGG:dosa:Os03t0121800-00 KEGG:dosa:Os03t0121901-00
KEGG:osa:4331440 Gramene:Q8LMR2 eggNOG:COG1111 HOGENOM:HOG000239675
KO:K11592 OMA:ITHASRP GO:GO:0004525 GO:GO:0035196
Gene3D:1.10.1520.10 SUPFAM:SSF69065 Uniprot:Q8LMR2
Length = 1883
Score = 509 (184.2 bits), Expect = 7.4e-84, Sum P(4) = 7.4e-84
Identities = 125/304 (41%), Positives = 180/304 (59%)
Query: 550 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGI--KVDFVNVPYERQFQVQAE--RLV 605
+ SKT+ADVVEALIG + GG+ + IGI ++D +P + + + R +
Sbjct: 1477 LSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGIHAELDPEEIPPPKPYDIPESIMRSI 1536
Query: 606 NVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKY 665
N L+ +L F++ LLVEA+TH S + CYQRLEF+GDAVLD+LIT +L+ Y
Sbjct: 1537 NFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVS-CYQRLEFVGDAVLDHLITRHLFFTY 1595
Query: 666 PTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLE-- 723
L PG LTD+R+A+VNN+ +A +VKH LH H+ H S L I V + L+
Sbjct: 1596 TDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELLKPG 1655
Query: 724 -STFGWESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETMRLQPA 782
++FG + PK LGDI+ES++GAIF+DSG + VV++ +PLL PM+TPET+ + P
Sbjct: 1656 FNSFGL-GDCKAPKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMHPV 1714
Query: 783 RELNEYCQKHHFSMKKTVAPRINGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVL 842
REL E CQ+ ++ A R G A TVEV +G + K+ A+K+A++ L
Sbjct: 1715 RELQERCQQQAEGLEYK-ASRA-GNIA-TVEVFVDGVQIGVAQ-NPQKKMAQKLAARNAL 1770
Query: 843 KSLK 846
LK
Sbjct: 1771 VVLK 1774
Score = 291 (107.5 bits), Expect = 7.4e-84, Sum P(4) = 7.4e-84
Identities = 74/243 (30%), Positives = 123/243 (50%)
Query: 294 VVCTPHSGQIYYITGVLGHLNANSLFTRNDG--GAITYKKH---YEERYGIQLCFDQELL 348
VV HSG+ +Y+ + ++NA + F R +G G + Y + Y+++YG++L + ++ L
Sbjct: 1189 VVTAAHSGKRFYVDCICYNMNAENSFPRKEGYLGPLEYSSYADYYKQKYGVELIYRKQPL 1248
Query: 349 LNGRRIFHAQNYLS-KCRQEKQREPS------KISFE-LPPELCRIIMGPMSLSTFYSFT 400
+ R + + +N LS + RE K + LPPELC ++ P+ S
Sbjct: 1249 IRARGVSYCKNLLSPRFEHSDAREGDFSENLDKTYYVYLPPELC--LVHPLPGSLVRGAQ 1306
Query: 401 FVPSIMHRLQSXXXXXXXXXXXXDHCMQNVTIPTSKVLEAITTKKCQEGFHLESLETLGD 460
+PSIM R++S D+ +P +K+LEA+T CQE E E LGD
Sbjct: 1307 RLPSIMRRVESMLLAVQLKDII-DY-----PVPATKILEALTAASCQETLCYERAELLGD 1360
Query: 461 SFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTEPFDPKMWM 520
++LK+ S+ LF Y HEG L+ + +++SN L + + L +I+ + F P W
Sbjct: 1361 AYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALNKTLQSYIQADRFAPSRWA 1420
Query: 521 IPG 523
PG
Sbjct: 1421 APG 1423
Score = 138 (53.6 bits), Expect = 7.4e-84, Sum P(4) = 7.4e-84
Identities = 38/121 (31%), Positives = 61/121 (50%)
Query: 6 HTVCSFIQSRGRARMQNSDYLLMLKRYFKPTPKFDINKEMGICTLYLPNNCPIQTVIAQ- 64
H CS + S R + + ++++ ++Y KP + + C L LP N P + +
Sbjct: 822 HFYCSQLPS-DRYSILHPEFIM--QKYEKPGGSVEYS-----CKLQLPCNAPFEKLEGPI 873
Query: 65 -GNIKTLKQTACLEACKKLHQIGALTDNLLPDVVVEEHDAQKHGNE----PYDAEHPIYF 119
+I+ +Q CL ACKKLH++GA TD LLPD E + + +E P A H ++
Sbjct: 874 CSSIRLAQQAVCLAACKKLHEMGAFTDTLLPDRGSGEGEKTEQNDEGEPLPGTARHREFY 933
Query: 120 P 120
P
Sbjct: 934 P 934
Score = 120 (47.3 bits), Expect = 2.5e-15, Sum P(3) = 2.5e-15
Identities = 55/189 (29%), Positives = 89/189 (47%)
Query: 601 AERLVNV-RHLES-LLNYSFRD------PSL-LVEALTHGSYMLPEIPRCYQRLEFLGDA 651
A+RL ++ R +ES LL +D P+ ++EALT S + CY+R E LGDA
Sbjct: 1305 AQRLPSIMRRVESMLLAVQLKDIIDYPVPATKILEALTAASC---QETLCYERAELLGDA 1361
Query: 652 VLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWIN 711
L ++++ +L+ KYP G LT MR V+N ++ L +I +W
Sbjct: 1362 YLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALNKTLQSYIQADRFAPSRWAA 1421
Query: 712 ITV-DSFERLSLE---STFGWESE-TSFPK-ALGDIIESLS--GAIFVDSGCNKEVVFES 763
V F+ S E S F ES K + D +++ G I DS C + + ++
Sbjct: 1422 PGVLPVFDEESREYEPSIFDEESTGCELQKESYDDYADNMQEDGEIEGDSSCYRVLSSKT 1481
Query: 764 IRPLLEPMI 772
+ ++E +I
Sbjct: 1482 LADVVEALI 1490
Score = 95 (38.5 bits), Expect = 2.3e-79, Sum P(4) = 2.3e-79
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 2 FDPSHTVCSFIQSRGRARMQNSDYLLMLKR 31
FD + TV ++IQSRGRAR SDY+LML+R
Sbjct: 725 FDLAKTVLAYIQSRGRARKPGSDYILMLER 754
Score = 84 (34.6 bits), Expect = 7.4e-84, Sum P(4) = 7.4e-84
Identities = 17/58 (29%), Positives = 35/58 (60%)
Query: 162 ELESEIKKVNFDLEVDRGRLT-VNLKHLGKIQLTPDKVLLCRRFQIALFRVIMDHNLD 218
EL++E+ DL V R +T +L G+I++T +++L + F + L +++D ++D
Sbjct: 992 ELDAEVLSTTMDLFVARTMITKASLVFRGRIEITESQLVLLKSFHVRLMSIVLDVDVD 1049
Score = 76 (31.8 bits), Expect = 7.4e-11, Sum P(3) = 7.4e-11
Identities = 37/139 (26%), Positives = 64/139 (46%)
Query: 437 VLEAIT-TKKCQEGFHL-ESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNA 494
++EAIT + G + LE +GD+ L + ++ LF TY + G L+ + ++N
Sbjct: 1555 LVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNE 1614
Query: 495 ALCKLGCDHKLPGFIR--TEPFDPKMWMIPGDNSGSYELNDHSLFNERKIYVTGRKKVKS 552
++ HKL +R + + ++ D EL FN + G K
Sbjct: 1615 NFARVAVKHKLHVHLRHGSSALETQIREFVKDVQE--ELLKPG-FNS---FGLGDCKAP- 1667
Query: 553 KTVADVVEALIGA-FLSTG 570
K + D+VE++ GA FL +G
Sbjct: 1668 KVLGDIVESIAGAIFLDSG 1686
Score = 46 (21.3 bits), Expect = 1.5e-49, Sum P(3) = 1.5e-49
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 100 EHDAQKHGN--EPYDAEHPIYFPPEL 123
EH + G+ E D + +Y PPEL
Sbjct: 1266 EHSDAREGDFSENLDKTYYVYLPPEL 1291
>TAIR|locus:2149259 [details] [associations]
symbol:DCL4 "dicer-like 4" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006396
"RNA processing" evidence=ISS;RCA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010050 "vegetative phase change"
evidence=RCA;IMP] [GO:0010267 "production of ta-siRNAs involved in
RNA interference" evidence=RCA;IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA;IMP] [GO:0051607
"defense response to virus" evidence=RCA;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IGI;RCA] [GO:0009616 "virus induced gene silencing"
evidence=IGI;RCA] [GO:0010599 "production of lsiRNA involved in RNA
interference" evidence=IMP] [GO:0006353 "DNA-dependent
transcription, termination" evidence=IMP] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0016569 "covalent chromatin
modification" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00035 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170
Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358
SMART:SM00490 SMART:SM00535 SMART:SM00949 InterPro:IPR014720
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010599 GO:GO:0010267 GO:GO:0010050 EMBL:AF296825
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0010216 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ118423 IPI:IPI00521227
RefSeq:NP_197532.3 UniGene:At.31201 PDB:2KOU PDBsum:2KOU
ProteinModelPortal:P84634 SMR:P84634 MINT:MINT-6948367
STRING:P84634 PaxDb:P84634 PRIDE:P84634 EnsemblPlants:AT5G20320.1
GeneID:832154 KEGG:ath:AT5G20320 TAIR:At5g20320
HOGENOM:HOG000083706 InParanoid:P84634 OMA:RNLLHNR PhylomeDB:P84634
ProtClustDB:CLSN2702253 EvolutionaryTrace:P84634
Genevestigator:P84634 GO:GO:0006353 GO:GO:0009616 Uniprot:P84634
Length = 1702
Score = 427 (155.4 bits), Expect = 7.1e-73, Sum P(3) = 7.1e-73
Identities = 111/308 (36%), Positives = 163/308 (52%)
Query: 546 GRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVPYE------RQFQV 599
G + KT+ADVVEAL+GAFL G + FL IG+ VDF ++ + R++
Sbjct: 1226 GHHWLYKKTIADVVEALVGAFLVDSGFKGAVKFLKWIGVNVDFESLQVQDACIASRRYLP 1285
Query: 600 QAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITV 659
R N+ LE+ L+Y F LLV+A H SY CYQRLEFLGDAVLDYL+T
Sbjct: 1286 LTTRN-NLETLENQLDYKFLHKGLLVQAFIHPSYNRHG-GGCYQRLEFLGDAVLDYLMTS 1343
Query: 660 YLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFER 719
Y + +P L PG LTD+RS SVNN+ A +V L + + S L++ I +
Sbjct: 1344 YFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLAS 1403
Query: 720 LSLESTFGWESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETMRL 779
L S G PK LGD++ES GA+F+D G N V+ + L+P+ +++
Sbjct: 1404 SPLAS--GQSEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQI 1461
Query: 780 QPARELNEYCQKHHFSMKKTVAPRINGKAAVTVEVHANGTLFKHTHADADKETAKKVASK 839
P +EL E CQ + + ++ A + +G V ++V NG + +K K A++
Sbjct: 1462 SPIKELIELCQSYKWD-REISATKKDGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQ 1520
Query: 840 EVLKSLKA 847
++ +LKA
Sbjct: 1521 LMITNLKA 1528
Score = 372 (136.0 bits), Expect = 7.1e-73, Sum P(3) = 7.1e-73
Identities = 126/462 (27%), Positives = 217/462 (46%)
Query: 159 VRTELESEIKKVNFDLEVDRGR-LTVNLKHLGKIQLTPDKVLLCRRFQIALFRVIMDHNL 217
+++ L E + ++ DL + R ++V + G + D++ L FQ +V+ +
Sbjct: 815 MKSPLPVEAETMDIDLHLAHQRSVSVKIFPSGVTEFDNDEIRLAELFQEIALKVLFERG- 873
Query: 218 DKLNEILKGLWLRDNLEID----YLLLPA------SEQSIDWEPVAS-LSFPC-DIGLKH 265
+ + + + L L+D+ YLLLP S S+DW + + LS P
Sbjct: 874 ELIPDFVP-LELQDSSRTSKSTFYLLLPLCLHDGESVISVDWVTIRNCLSSPIFKTPSVL 932
Query: 266 HKNCSTMSNARVVQTKSGPLCTCMIYNSVVCTPHSGQIYYITGVLGHLNANSLFTRNDGG 325
++ S + + + +G + NS+V T +S Q Y++ + H N +
Sbjct: 933 VEDIFPPSGSHL-KLANGCWNIDDVKNSLVFTTYSKQFYFVADIC-H-GRNGFSPVKESS 989
Query: 326 AITYKKHYEERYGIQLCFDQELLLNGRRIFHAQNYLSKCRQEKQREPSKIS---FELPPE 382
++ + + YG++L + LL + + H +N L R + EP ++ E+PPE
Sbjct: 990 TKSHVESIYKLYGVELKHPAQPLLRVKPLCHVRNLLHN-RMQTNLEPQELDEYFIEIPPE 1048
Query: 383 LCRIIMGPMSLSTFYSFTFVPSIMHRLQSXXXXXXXXXXXXDHCMQNVTIPTSKVLEAIT 442
L + + +S S + +PSIMHR+++ + + +VLEA+T
Sbjct: 1049 LSHLKIKGLSKDIGSSLSLLPSIMHRMENLLVAIELKHVLSASIPEIAEVSGHRVLEALT 1108
Query: 443 TKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCD 502
T+KC E LE LE LGD+FLK+A S+ LF + + EG L+ ++ +++N+ LC+L
Sbjct: 1109 TEKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIK 1168
Query: 503 HKLPGFIRTEPFDPKMWMIPG-------DNSGSYELNDHSLFNERKIYVTGRKKVK---- 551
L +IR + DP + G D S E+ HSL + I + +++
Sbjct: 1169 KNLQVYIRDQALDPTQFFAFGHPCRVTCDEVASKEV--HSLNRDLGILESNTGEIRCSKG 1226
Query: 552 -----SKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDF 588
KT+ADVVEAL+GAFL G + FL IG+ VDF
Sbjct: 1227 HHWLYKKTIADVVEALVGAFLVDSGFKGAVKFLKWIGVNVDF 1268
Score = 132 (51.5 bits), Expect = 9.2e-48, Sum P(3) = 9.2e-48
Identities = 63/248 (25%), Positives = 105/248 (42%)
Query: 32 YFKPTPKFDINK--EMG--ICTLYLPNNCPIQTVIAQ--GNIKTLKQTACLEACKKLHQI 85
+F+P P+F E G IC + LP N PI + + + + K+ ACL+A +LH +
Sbjct: 672 FFQPKPEFQFKPVDEFGGTICRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNL 731
Query: 86 GALTDNLLPDVVVEEHDAQKHGNEPYD-------AEHPIYFP--PELVNQC--PQDTKIT 134
G L D LLPD E D +D + +Y P L Q P + +
Sbjct: 732 GVLNDFLLPDSKDEIEDELSDDEFDFDNIKGEGCSRGDLYEMRVPVLFKQKWDPSTSCVN 791
Query: 135 YHCYLIELKQNFNYDIPAHDIVLAVRTELESEIKKVNFDLEVDRGR-LTVNLKHLGKIQL 193
H Y I + D +++ L E + ++ DL + R ++V + G +
Sbjct: 792 LHSYYIMFVPH-PADRIYKKFGFFMKSPLPVEAETMDIDLHLAHQRSVSVKIFPSGVTEF 850
Query: 194 TPDKVLLCRRFQIALFRVIMDHNLDKLNEILKGLWLRDNLEID----YLLLPASEQSIDW 249
D++ L FQ +V+ + + + + + L L+D+ YLLLP D
Sbjct: 851 DNDEIRLAELFQEIALKVLFERG-ELIPDFVP-LELQDSSRTSKSTFYLLLPLCLH--DG 906
Query: 250 EPVASLSF 257
E V S+ +
Sbjct: 907 ESVISVDW 914
Score = 93 (37.8 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 643 QRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHI 699
+RLE LGDA L + ++ +L+ + +L G+LT RS VNN ++K L +I
Sbjct: 1119 ERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKKNLQVYI 1175
Score = 80 (33.2 bits), Expect = 7.1e-73, Sum P(3) = 7.1e-73
Identities = 16/28 (57%), Positives = 20/28 (71%)
Query: 2 FDPSHTVCSFIQSRGRARMQNSDYLLML 29
+D TV SFIQSRGRARM S+Y ++
Sbjct: 573 YDLPETVTSFIQSRGRARMPQSEYAFLV 600
Score = 66 (28.3 bits), Expect = 3.5e-08, Sum P(4) = 3.5e-08
Identities = 29/122 (23%), Positives = 53/122 (43%)
Query: 453 ESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTE 512
+ LE LGD+ L Y + F + G L+ + ++N AL + L F+
Sbjct: 1327 QRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFL--- 1383
Query: 513 PFDPKMWMIPGDNSGSYE-LNDHSLFNERKIYVTGRKKVKS--KTVADVVEALIGA-FLS 568
F +++ +E + D++ F +G+ + K + D+VE+ +GA FL
Sbjct: 1384 -FCESIYL--------HEVIEDYTNFLASSPLASGQSEGPRCPKVLGDLVESCLGALFLD 1434
Query: 569 TG 570
G
Sbjct: 1435 CG 1436
Score = 41 (19.5 bits), Expect = 8.7e-69, Sum P(3) = 8.7e-69
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 99 EEHDAQKHGNEPYDAEHPIYFPPE 122
E H AQ+ N PY +++ E
Sbjct: 252 ECHHAQQQSNHPYAEIMKVFYKSE 275
Score = 37 (18.1 bits), Expect = 9.4e-32, Sum P(3) = 9.4e-32
Identities = 13/64 (20%), Positives = 31/64 (48%)
Query: 673 LTDMRSASVNNDCYALSSV-KHGLHKH--ILHASQELYKWINITVDSFERLSLESTFGWE 729
+T++++ + L V K+G+ ++ +++ +++ E L++ TFG
Sbjct: 1523 ITNLKAHENITTSHPLEDVLKNGIRNEAKLIGYNEDPIDVVDLVGLDVENLNILETFGGN 1582
Query: 730 SETS 733
SE S
Sbjct: 1583 SERS 1586
>ZFIN|ZDB-GENE-030131-3445 [details] [associations]
symbol:dicer1 "Dicer1, Dcr-1 homolog (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=ISS;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0070883 "pre-miRNA binding" evidence=IDA] [GO:0021591
"ventricular system development" evidence=IGI;IMP] [GO:0035279
"mRNA cleavage involved in gene silencing by miRNA" evidence=IGI]
[GO:0035195 "gene silencing by miRNA" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720
ZFIN:ZDB-GENE-030131-3445 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0035279 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
GO:GO:0021591 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HSSP:P66666 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
eggNOG:COG0571 GO:GO:0070883 CTD:23405 HOGENOM:HOG000001567
EMBL:AL772219 EMBL:AY386319 IPI:IPI00933004 RefSeq:NP_001154925.1
UniGene:Dr.78137 STRING:Q6TV19 Ensembl:ENSDART00000045881
Ensembl:ENSDART00000109826 GeneID:324724 KEGG:dre:324724
InParanoid:Q6TV19 OrthoDB:EOG4JDH5W NextBio:20808937
ArrayExpress:Q6TV19 Bgee:Q6TV19 Uniprot:Q6TV19
Length = 1865
Score = 395 (144.1 bits), Expect = 2.4e-57, Sum P(6) = 2.4e-57
Identities = 104/285 (36%), Positives = 155/285 (54%)
Query: 584 IKVDFVNVPYERQFQ-VQAERLVN-----VRHLESLLNYSFRDPSLLVEALTHGSYMLPE 637
++ ++ +P F+ AER +N + ES +NY+F++ + L++A TH SY
Sbjct: 1580 LQYGWLKIPPRCMFEHPDAERTLNHLISGFLNFESKINYTFKNKAYLLQAFTHASYHYNT 1639
Query: 638 IPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHK 697
I CYQRLEFLGDA+LDYLIT +LY SPG LTD+RSA VNN +A +VK+ HK
Sbjct: 1640 ITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHK 1699
Query: 698 HILHASQELYK----WINITVDSFERLSLESTFGW-------ESETSFPKALGDIIESLS 746
+ S EL+ ++ ++ E ++S E + PKA+GDI ESL+
Sbjct: 1700 YFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLA 1759
Query: 747 GAIFVDSGCNKEVVFESIRPLLEPMITPETMRLQPARELNEYCQKHHFSMKKTVAPRI-N 805
GAI++DSG + E V++ P++ P+I + + P + E + + K + A R +
Sbjct: 1760 GAIYMDSGMSLETVWQVYYPMMRPLIEKFSANV-PRSPVRELLEMEPETAKFSPAERTYD 1818
Query: 806 GKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKASFP 850
GK VTVEV G FK AK A++ L+SLKA+ P
Sbjct: 1819 GKVRVTVEVVGKGK-FKGV--GRSYRIAKSAAARRALRSLKANQP 1860
Score = 184 (69.8 bits), Expect = 2.4e-57, Sum P(6) = 2.4e-57
Identities = 39/88 (44%), Positives = 54/88 (61%)
Query: 437 VLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAAL 496
+L+A+T +GF+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 1279 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1338
Query: 497 CKLGCDHKLPGFIRTEPFDPKM-WMIPG 523
+LG LP + FDP + W+ PG
Sbjct: 1339 YRLGKKKGLPSRMVVSIFDPPVNWLPPG 1366
Score = 103 (41.3 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 620 DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSA 679
+P L+++ALT + +RLE LGD+ L + IT YL+ YP G L+ MRS
Sbjct: 1275 NPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1331
Query: 680 SVNN-DCYALSSVKHGL 695
V+N + Y L K GL
Sbjct: 1332 KVSNCNLYRLGK-KKGL 1347
Score = 89 (36.4 bits), Expect = 2.4e-57, Sum P(6) = 2.4e-57
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 550 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVPYERQ 596
+ K++AD VEAL+G +L++ GE +FL +G+KV +P E+Q
Sbjct: 1530 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV----LPPEKQ 1572
Score = 89 (36.4 bits), Expect = 2.4e-57, Sum P(6) = 2.4e-57
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 49 TLYLPNNCPIQTVIAQG--NIKTLKQTA-CLEACKKLHQIGALTDNLLP---DVVVEEHD 102
TL+LP N P++ + N L + A L C+KLH+IG L D+L+P + V E +
Sbjct: 652 TLFLPINSPLRVPVTGPVMNCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEE 711
Query: 103 AQKHGNE 109
H E
Sbjct: 712 LDLHDEE 718
Score = 79 (32.9 bits), Expect = 0.00036, Sum P(4) = 0.00036
Identities = 26/132 (19%), Positives = 59/132 (44%)
Query: 453 ESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTE 512
+ LE LGD+ L Y ++ L++ + H G+L+ + +++N L + + +
Sbjct: 1645 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKA- 1703
Query: 513 PFDPKMWMIPGDN-SGSYELND-HSLFNERKIYVTGRKKVKS----KTVADVVEALIGAF 566
P+++ + D E N+ + +E + +K + K + D+ E+L GA
Sbjct: 1704 -VSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1762
Query: 567 LSTGGENVGLIF 578
G ++ ++
Sbjct: 1763 YMDSGMSLETVW 1774
Score = 57 (25.1 bits), Expect = 2.4e-57, Sum P(6) = 2.4e-57
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 2 FDPSHTVCSFIQSRGRARMQNSDYLLMLKRYFKPTPKFDINKEMGICTLYLPNNC 56
FD S++QS+GRAR S+Y+++ T + D+ I + L N C
Sbjct: 523 FDLPTEYRSYVQSKGRARAPVSNYIMLADSERTKTFQEDLKTYKAIEKI-LRNKC 576
Score = 52 (23.4 bits), Expect = 2.4e-57, Sum P(6) = 2.4e-57
Identities = 33/127 (25%), Positives = 52/127 (40%)
Query: 298 PHSGQIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLC-FDQELL----LNGR 352
PH +Y+ V L S F + T+ ++Y+ +Y + L +Q LL + R
Sbjct: 928 PHR---FYVADVYTDLTPLSKFPSPEYE--TFAEYYKTKYNLDLSNVNQPLLDVDHTSSR 982
Query: 353 RIFHAQNYLS---KCRQEKQREPSKISFE-------LPPELCRIIMGPMSLSTFYSFTFV 402
+L+ K E K +E L PELC I P+ S + +
Sbjct: 983 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAI--HPIPASLWRKAVCL 1040
Query: 403 PSIMHRL 409
PSI++RL
Sbjct: 1041 PSILYRL 1047
Score = 42 (19.8 bits), Expect = 7.2e-51, Sum P(5) = 7.2e-51
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 196 DKVLLCRRFQIALFRVIMDHN 216
D + R++Q+ L ++HN
Sbjct: 29 DNIYTPRKYQVELLEAALEHN 49
>UNIPROTKB|A0MQH0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:10029
"Cricetulus griseus" [GO:0016442 "RNA-induced silencing complex"
evidence=ISS] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EF031271 RefSeq:NP_001231198.1
ProteinModelPortal:A0MQH0 SMR:A0MQH0 GeneID:100689239
Uniprot:A0MQH0
Length = 1917
Score = 389 (142.0 bits), Expect = 4.6e-57, Sum P(6) = 4.6e-57
Identities = 98/254 (38%), Positives = 141/254 (55%)
Query: 609 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTL 668
+ E +NY F++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 1663 NFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1722
Query: 669 SPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYK----WINITVDSFERLSLES 724
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ ++ ++ E ++S
Sbjct: 1723 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDS 1782
Query: 725 TFGW-------ESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETM 777
E + PKA+GDI ESL+GAI++DSG + EVV++ P++ P+I +
Sbjct: 1783 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSA 1842
Query: 778 RLQPARELNEYCQKHHFSMKKTVAPRI-NGKAAVTVEVHANGTLFKHTHADADKETAKKV 836
+ P + E + + K + A R +GK VTVEV G FK AK
Sbjct: 1843 NV-PRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKGV--GRSYRIAKSA 1898
Query: 837 ASKEVLKSLKASFP 850
A++ L+SLKA+ P
Sbjct: 1899 AARRALRSLKANQP 1912
Score = 184 (69.8 bits), Expect = 4.6e-57, Sum P(6) = 4.6e-57
Identities = 39/88 (44%), Positives = 54/88 (61%)
Query: 437 VLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAAL 496
+L+A+T +GF+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 1297 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1356
Query: 497 CKLGCDHKLPGFIRTEPFDPKM-WMIPG 523
+LG LP + FDP + W+ PG
Sbjct: 1357 YRLGKKKGLPSRMVVSIFDPPVNWLPPG 1384
Score = 103 (41.3 bits), Expect = 3.6e-07, Sum P(4) = 3.6e-07
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 620 DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSA 679
+P L+++ALT + +RLE LGD+ L + IT YL+ YP G L+ MRS
Sbjct: 1293 NPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1349
Query: 680 SVNN-DCYALSSVKHGL 695
V+N + Y L K GL
Sbjct: 1350 KVSNCNLYRLGK-KKGL 1365
Score = 98 (39.6 bits), Expect = 4.6e-57, Sum P(6) = 4.6e-57
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 49 TLYLPNNCPIQTVIA---QGNIKTLKQTACLEACKKLHQIGALTDNLLP---DVVVEEHD 102
TLYLP N P++ I G ++ ++ L C+KLH+IG L ++L+P + V E +
Sbjct: 666 TLYLPINSPLRASIVGPPMGCVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEE 725
Query: 103 AQKHGNE 109
H E
Sbjct: 726 LDLHDEE 732
Score = 87 (35.7 bits), Expect = 4.6e-57, Sum P(6) = 4.6e-57
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 550 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 586
+ K++AD VEAL+G +L++ GE +FL +G+KV
Sbjct: 1550 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1586
Score = 81 (33.6 bits), Expect = 5.0e-05, Sum P(4) = 5.0e-05
Identities = 26/132 (19%), Positives = 60/132 (45%)
Query: 453 ESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTE 512
+ LE LGD+ L Y ++ L++ + H G+L+ + +++N L + + +
Sbjct: 1697 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKA- 1755
Query: 513 PFDPKMWMIPGDN-SGSYELND-HSLFNERKIYVTGRKKVKS----KTVADVVEALIGAF 566
P+++ + D E N+ + +E + +K + K + D+ E+L GA
Sbjct: 1756 -VSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1814
Query: 567 LSTGGENVGLIF 578
G ++ +++
Sbjct: 1815 YMDSGMSLEVVW 1826
Score = 54 (24.1 bits), Expect = 4.6e-57, Sum P(6) = 4.6e-57
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 2 FDPSHTVCSFIQSRGRARMQNSDYLLM 28
FD S++QS+GRAR S+Y+++
Sbjct: 537 FDLPTEYRSYVQSKGRARAPISNYVML 563
Score = 53 (23.7 bits), Expect = 4.6e-57, Sum P(6) = 4.6e-57
Identities = 33/127 (25%), Positives = 52/127 (40%)
Query: 298 PHSGQIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLC-FDQELL----LNGR 352
PH +Y+ V L S F + T+ ++Y+ +Y + L +Q LL + R
Sbjct: 942 PHR---FYVADVYTDLTPLSKFPSPEYE--TFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 996
Query: 353 RIFHAQNYLS---KCRQEKQREPSKISFE-------LPPELCRIIMGPMSLSTFYSFTFV 402
+L+ K E K +E L PELC I P+ S + +
Sbjct: 997 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAI--HPIPASLWRKAVCL 1054
Query: 403 PSIMHRL 409
PSI++RL
Sbjct: 1055 PSILYRL 1061
Score = 46 (21.3 bits), Expect = 2.1e-50, Sum P(5) = 2.1e-50
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 196 DKVLLCRRFQIALFRVIMDHN 216
D + R++Q+ L +DHN
Sbjct: 39 DNIYTPRKYQVELLEAALDHN 59
>UNIPROTKB|E9PU15 [details] [associations]
symbol:Dicer1 "Protein Dicer1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 RGD:1309381 GO:GO:0005524 GO:GO:0010070 GO:GO:0006915
GO:GO:0021987 GO:GO:0043066 GO:GO:0045664 GO:GO:0051225
GO:GO:0030324 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607
GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791
GO:GO:0048536 GO:GO:0003725 GO:GO:0035264 GO:GO:0035116
GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 IPI:IPI00365891
Ensembl:ENSRNOT00000014405 Uniprot:E9PU15
Length = 1908
Score = 388 (141.6 bits), Expect = 4.6e-57, Sum P(6) = 4.6e-57
Identities = 98/254 (38%), Positives = 141/254 (55%)
Query: 609 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTL 668
+ E +NY F++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 1654 NFEKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1713
Query: 669 SPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYK----WINITVDSFERLSLES 724
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ ++ ++ E ++S
Sbjct: 1714 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDS 1773
Query: 725 TFGW-------ESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETM 777
E + PKA+GDI ESL+GAI++DSG + EVV++ P++ P+I +
Sbjct: 1774 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSA 1833
Query: 778 RLQPARELNEYCQKHHFSMKKTVAPRI-NGKAAVTVEVHANGTLFKHTHADADKETAKKV 836
+ P + E + + K + A R +GK VTVEV G FK AK
Sbjct: 1834 NV-PRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKGV--GRSYRIAKSA 1889
Query: 837 ASKEVLKSLKASFP 850
A++ L+SLKA+ P
Sbjct: 1890 AARRALRSLKANQP 1903
Score = 185 (70.2 bits), Expect = 4.6e-57, Sum P(6) = 4.6e-57
Identities = 39/88 (44%), Positives = 54/88 (61%)
Query: 437 VLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAAL 496
+L+A+T +GF+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 1287 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1346
Query: 497 CKLGCDHKLPGFIRTEPFDPKM-WMIPG 523
+LG LP + FDP + W+ PG
Sbjct: 1347 YRLGKKQGLPSRMVVSIFDPPVNWLPPG 1374
Score = 104 (41.7 bits), Expect = 2.8e-07, Sum P(4) = 2.8e-07
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 620 DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSA 679
+P L+++ALT + +RLE LGD+ L + IT YL+ YP G L+ MRS
Sbjct: 1283 NPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1339
Query: 680 SVNN-DCYALSSVKHGL 695
V+N + Y L K GL
Sbjct: 1340 KVSNCNLYRLGK-KQGL 1355
Score = 98 (39.6 bits), Expect = 4.6e-57, Sum P(6) = 4.6e-57
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 49 TLYLPNNCPIQTVIA---QGNIKTLKQTACLEACKKLHQIGALTDNLLP---DVVVEEHD 102
TLYLP N P++ I G ++ ++ L C+KLH+IG L ++L+P + V E +
Sbjct: 656 TLYLPINSPLRASIVGPPMGCVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEE 715
Query: 103 AQKHGNE 109
H E
Sbjct: 716 LDLHDEE 722
Score = 87 (35.7 bits), Expect = 4.6e-57, Sum P(6) = 4.6e-57
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 550 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 586
+ K++AD VEAL+G +L++ GE +FL +G+KV
Sbjct: 1542 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1578
Score = 81 (33.6 bits), Expect = 5.0e-05, Sum P(4) = 5.0e-05
Identities = 26/132 (19%), Positives = 60/132 (45%)
Query: 453 ESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTE 512
+ LE LGD+ L Y ++ L++ + H G+L+ + +++N L + + +
Sbjct: 1688 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKA- 1746
Query: 513 PFDPKMWMIPGDN-SGSYELND-HSLFNERKIYVTGRKKVKS----KTVADVVEALIGAF 566
P+++ + D E N+ + +E + +K + K + D+ E+L GA
Sbjct: 1747 -VSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1805
Query: 567 LSTGGENVGLIF 578
G ++ +++
Sbjct: 1806 YMDSGMSLEVVW 1817
Score = 54 (24.1 bits), Expect = 4.6e-57, Sum P(6) = 4.6e-57
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 2 FDPSHTVCSFIQSRGRARMQNSDYLLM 28
FD S++QS+GRAR S+Y+++
Sbjct: 527 FDLPTEYRSYVQSKGRARAPISNYVML 553
Score = 53 (23.7 bits), Expect = 4.6e-57, Sum P(6) = 4.6e-57
Identities = 33/127 (25%), Positives = 52/127 (40%)
Query: 298 PHSGQIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLC-FDQELL----LNGR 352
PH +Y+ V L S F + T+ ++Y+ +Y + L +Q LL + R
Sbjct: 932 PHR---FYVADVYTDLTPLSKFPSPEYE--TFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 986
Query: 353 RIFHAQNYLS---KCRQEKQREPSKISFE-------LPPELCRIIMGPMSLSTFYSFTFV 402
+L+ K E K +E L PELC I P+ S + +
Sbjct: 987 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAI--HPIPASLWRKAVCL 1044
Query: 403 PSIMHRL 409
PSI++RL
Sbjct: 1045 PSILYRL 1051
Score = 46 (21.3 bits), Expect = 2.1e-50, Sum P(5) = 2.1e-50
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 196 DKVLLCRRFQIALFRVIMDHN 216
D + R++Q+ L +DHN
Sbjct: 29 DNIYTPRKYQVELLEAALDHN 49
>UNIPROTKB|F1NJX0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0005524
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00818350 EMBL:AADN02003674
Ensembl:ENSGALT00000037569 ArrayExpress:F1NJX0 Uniprot:F1NJX0
Length = 1921
Score = 391 (142.7 bits), Expect = 5.5e-57, Sum P(6) = 5.5e-57
Identities = 98/254 (38%), Positives = 142/254 (55%)
Query: 609 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTL 668
+ E +NYSF++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 1667 NFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1726
Query: 669 SPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYK----WINITVDSFERLSLES 724
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ ++ ++ E ++S
Sbjct: 1727 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDS 1786
Query: 725 TFGW-------ESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETM 777
E + PKA+GDI ESL+GAI++DSG + E+V++ P++ P+I +
Sbjct: 1787 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSA 1846
Query: 778 RLQPARELNEYCQKHHFSMKKTVAPRI-NGKAAVTVEVHANGTLFKHTHADADKETAKKV 836
+ P + E + + K + A R +GK VTVEV G FK AK
Sbjct: 1847 NV-PRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKGV--GRSYRIAKSA 1902
Query: 837 ASKEVLKSLKASFP 850
A++ L+SLKA+ P
Sbjct: 1903 AARRALRSLKANQP 1916
Score = 184 (69.8 bits), Expect = 5.5e-57, Sum P(6) = 5.5e-57
Identities = 39/88 (44%), Positives = 54/88 (61%)
Query: 437 VLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAAL 496
+L+A+T +GF+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 1298 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1357
Query: 497 CKLGCDHKLPGFIRTEPFDPKM-WMIPG 523
+LG LP + FDP + W+ PG
Sbjct: 1358 YRLGKKKGLPSRMVVSIFDPPVNWLPPG 1385
Score = 103 (41.3 bits), Expect = 7.1e-07, Sum P(4) = 7.1e-07
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 620 DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSA 679
+P L+++ALT + +RLE LGD+ L + IT YL+ YP G L+ MRS
Sbjct: 1294 NPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1350
Query: 680 SVNN-DCYALSSVKHGL 695
V+N + Y L K GL
Sbjct: 1351 KVSNCNLYRLGK-KKGL 1366
Score = 94 (38.1 bits), Expect = 5.5e-57, Sum P(6) = 5.5e-57
Identities = 31/106 (29%), Positives = 49/106 (46%)
Query: 49 TLYLPNNCPIQTVIA---QGNIKTLKQTACLEACKKLHQIGALTDNLLP---DVVVEEHD 102
TLYLP N P++ I + ++ L C+KLH+IG L D+L+P + V E +
Sbjct: 666 TLYLPINSPLRASIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEE 725
Query: 103 AQKHGNE-------PYDAEHPIYFPPELVNQCPQDT--KITYHCYL 139
H E P + +P + + +C +D+ K CYL
Sbjct: 726 LDLHDEEETSVPGRPGSTKRRQCYP-KAIPECLRDSYPKPDQPCYL 770
Score = 87 (35.7 bits), Expect = 5.5e-57, Sum P(6) = 5.5e-57
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 550 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 586
+ K++AD VEAL+G +L++ GE +FL +G+KV
Sbjct: 1553 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1589
Score = 82 (33.9 bits), Expect = 8.2e-05, Sum P(4) = 8.2e-05
Identities = 26/132 (19%), Positives = 60/132 (45%)
Query: 453 ESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTE 512
+ LE LGD+ L Y ++ L++ + H G+L+ + +++N L + + +
Sbjct: 1701 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKA- 1759
Query: 513 PFDPKMWMIPGDN-SGSYELND-HSLFNERKIYVTGRKKVKS----KTVADVVEALIGAF 566
P+++ + D E N+ + +E + +K + K + D+ E+L GA
Sbjct: 1760 -VSPELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1818
Query: 567 LSTGGENVGLIF 578
G ++ +++
Sbjct: 1819 YMDSGMSLEMVW 1830
Score = 55 (24.4 bits), Expect = 5.5e-57, Sum P(6) = 5.5e-57
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 2 FDPSHTVCSFIQSRGRARMQNSDYLLM 28
FD S++QS+GRAR S+Y+++
Sbjct: 537 FDLPTEYRSYVQSKGRARAPISNYIML 563
Score = 53 (23.7 bits), Expect = 5.5e-57, Sum P(6) = 5.5e-57
Identities = 33/127 (25%), Positives = 52/127 (40%)
Query: 298 PHSGQIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLC-FDQELL----LNGR 352
PH +Y+ V L S F + T+ ++Y+ +Y + L +Q LL + R
Sbjct: 942 PHR---FYVADVYTDLTPLSKFPSPEYE--TFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 996
Query: 353 RIFHAQNYLS---KCRQEKQREPSKISFE-------LPPELCRIIMGPMSLSTFYSFTFV 402
+L+ K E K +E L PELC I P+ S + +
Sbjct: 997 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAI--HPIPASLWRKAVCL 1054
Query: 403 PSIMHRL 409
PSI++RL
Sbjct: 1055 PSILYRL 1061
Score = 46 (21.3 bits), Expect = 1.2e-50, Sum P(5) = 1.2e-50
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 196 DKVLLCRRFQIALFRVIMDHN 216
D + R++Q+ L +DHN
Sbjct: 39 DNIYTPRKYQVELLEAALDHN 59
Score = 38 (18.4 bits), Expect = 1.7e-35, Sum P(4) = 1.7e-35
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 432 IPTSKVLEAITTKKCQEGFHLESLET 457
+ T K +E I KC + ET
Sbjct: 576 LKTYKAIEKILRNKCSKSVDTSETET 601
Score = 37 (18.1 bits), Expect = 2.4e-55, Sum P(6) = 2.4e-55
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 353 RIFHAQNYLSKCRQEKQREPS 373
R F N L+ CRQE +P+
Sbjct: 1195 RDFCQGNQLNYCRQEIPVQPT 1215
>UNIPROTKB|Q25BN1 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0030423 "targeting of mRNA
for destruction involved in RNA interference" evidence=ISS]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=ISS] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 CTD:23405 HOGENOM:HOG000001567 EMBL:AB253768
IPI:IPI00818350 RefSeq:NP_001035555.1 UniGene:Gga.33735
ProteinModelPortal:Q25BN1 SMR:Q25BN1 STRING:Q25BN1 GeneID:423437
KEGG:gga:423437 NextBio:20825910 Uniprot:Q25BN1
Length = 1921
Score = 391 (142.7 bits), Expect = 5.5e-57, Sum P(6) = 5.5e-57
Identities = 98/254 (38%), Positives = 142/254 (55%)
Query: 609 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTL 668
+ E +NYSF++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 1667 NFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1726
Query: 669 SPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYK----WINITVDSFERLSLES 724
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ ++ ++ E ++S
Sbjct: 1727 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDS 1786
Query: 725 TFGW-------ESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETM 777
E + PKA+GDI ESL+GAI++DSG + E+V++ P++ P+I +
Sbjct: 1787 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSA 1846
Query: 778 RLQPARELNEYCQKHHFSMKKTVAPRI-NGKAAVTVEVHANGTLFKHTHADADKETAKKV 836
+ P + E + + K + A R +GK VTVEV G FK AK
Sbjct: 1847 NV-PRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKGV--GRSYRIAKSA 1902
Query: 837 ASKEVLKSLKASFP 850
A++ L+SLKA+ P
Sbjct: 1903 AARRALRSLKANQP 1916
Score = 184 (69.8 bits), Expect = 5.5e-57, Sum P(6) = 5.5e-57
Identities = 39/88 (44%), Positives = 54/88 (61%)
Query: 437 VLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAAL 496
+L+A+T +GF+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 1298 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1357
Query: 497 CKLGCDHKLPGFIRTEPFDPKM-WMIPG 523
+LG LP + FDP + W+ PG
Sbjct: 1358 YRLGKKKGLPSRMVVSIFDPPVNWLPPG 1385
Score = 103 (41.3 bits), Expect = 7.1e-07, Sum P(4) = 7.1e-07
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 620 DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSA 679
+P L+++ALT + +RLE LGD+ L + IT YL+ YP G L+ MRS
Sbjct: 1294 NPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1350
Query: 680 SVNN-DCYALSSVKHGL 695
V+N + Y L K GL
Sbjct: 1351 KVSNCNLYRLGK-KKGL 1366
Score = 94 (38.1 bits), Expect = 5.5e-57, Sum P(6) = 5.5e-57
Identities = 31/106 (29%), Positives = 49/106 (46%)
Query: 49 TLYLPNNCPIQTVIA---QGNIKTLKQTACLEACKKLHQIGALTDNLLP---DVVVEEHD 102
TLYLP N P++ I + ++ L C+KLH+IG L D+L+P + V E +
Sbjct: 666 TLYLPINSPLRASIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEE 725
Query: 103 AQKHGNE-------PYDAEHPIYFPPELVNQCPQDT--KITYHCYL 139
H E P + +P + + +C +D+ K CYL
Sbjct: 726 LDLHDEEETSVPGRPGSTKRRQCYP-KAIPECLRDSYPKPDQPCYL 770
Score = 87 (35.7 bits), Expect = 5.5e-57, Sum P(6) = 5.5e-57
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 550 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 586
+ K++AD VEAL+G +L++ GE +FL +G+KV
Sbjct: 1553 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1589
Score = 82 (33.9 bits), Expect = 8.2e-05, Sum P(4) = 8.2e-05
Identities = 26/132 (19%), Positives = 60/132 (45%)
Query: 453 ESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTE 512
+ LE LGD+ L Y ++ L++ + H G+L+ + +++N L + + +
Sbjct: 1701 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKA- 1759
Query: 513 PFDPKMWMIPGDN-SGSYELND-HSLFNERKIYVTGRKKVKS----KTVADVVEALIGAF 566
P+++ + D E N+ + +E + +K + K + D+ E+L GA
Sbjct: 1760 -VSPELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1818
Query: 567 LSTGGENVGLIF 578
G ++ +++
Sbjct: 1819 YMDSGMSLEMVW 1830
Score = 55 (24.4 bits), Expect = 5.5e-57, Sum P(6) = 5.5e-57
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 2 FDPSHTVCSFIQSRGRARMQNSDYLLM 28
FD S++QS+GRAR S+Y+++
Sbjct: 537 FDLPTEYRSYVQSKGRARAPISNYIML 563
Score = 53 (23.7 bits), Expect = 5.5e-57, Sum P(6) = 5.5e-57
Identities = 33/127 (25%), Positives = 52/127 (40%)
Query: 298 PHSGQIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLC-FDQELL----LNGR 352
PH +Y+ V L S F + T+ ++Y+ +Y + L +Q LL + R
Sbjct: 942 PHR---FYVADVYTDLTPLSKFPSPEYE--TFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 996
Query: 353 RIFHAQNYLS---KCRQEKQREPSKISFE-------LPPELCRIIMGPMSLSTFYSFTFV 402
+L+ K E K +E L PELC I P+ S + +
Sbjct: 997 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAI--HPIPASLWRKAVCL 1054
Query: 403 PSIMHRL 409
PSI++RL
Sbjct: 1055 PSILYRL 1061
Score = 46 (21.3 bits), Expect = 1.2e-50, Sum P(5) = 1.2e-50
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 196 DKVLLCRRFQIALFRVIMDHN 216
D + R++Q+ L +DHN
Sbjct: 39 DNIYTPRKYQVELLEAALDHN 59
Score = 38 (18.4 bits), Expect = 1.7e-35, Sum P(4) = 1.7e-35
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 432 IPTSKVLEAITTKKCQEGFHLESLET 457
+ T K +E I KC + ET
Sbjct: 576 LKTYKAIEKILRNKCSKSVDTSETET 601
Score = 37 (18.1 bits), Expect = 2.4e-55, Sum P(6) = 2.4e-55
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 353 RIFHAQNYLSKCRQEKQREPS 373
R F N L+ CRQE +P+
Sbjct: 1195 RDFCQGNQLNYCRQEIPVQPT 1215
>MGI|MGI:2177178 [details] [associations]
symbol:Dicer1 "dicer 1, ribonuclease type III" species:10090
"Mus musculus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IMP] [GO:0001932 "regulation of protein phosphorylation"
evidence=IMP] [GO:0001942 "hair follicle development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=ISO;ISA;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005793 "endoplasmic reticulum-Golgi
intermediate compartment" evidence=ISO] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IMP;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0008593 "regulation of Notch signaling pathway" evidence=IC]
[GO:0009791 "post-embryonic development" evidence=IMP] [GO:0010070
"zygote asymmetric cell division" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0010626 "negative
regulation of Schwann cell proliferation" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0014040
"positive regulation of Schwann cell differentiation" evidence=IMP]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0019827
"stem cell maintenance" evidence=IMP] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=IMP] [GO:0021675 "nerve development"
evidence=IMP] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IMP] [GO:0021987 "cerebral cortex
development" evidence=IMP] [GO:0030324 "lung development"
evidence=IMP] [GO:0030326 "embryonic limb morphogenesis"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISO;IDA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0030424
"axon" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0030426 "growth cone" evidence=ISO] [GO:0031047 "gene silencing
by RNA" evidence=IEA] [GO:0031054 "pre-miRNA processing"
evidence=ISO;IDA] [GO:0031069 "hair follicle morphogenesis"
evidence=IMP] [GO:0031641 "regulation of myelination" evidence=IMP]
[GO:0031643 "positive regulation of myelination" evidence=IMP]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IMP] [GO:0035198 "miRNA binding"
evidence=IDA] [GO:0035264 "multicellular organism growth"
evidence=IMP] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=IMP] [GO:0042981 "regulation of
apoptotic process" evidence=IMP] [GO:0043066 "negative regulation
of apoptotic process" evidence=IMP] [GO:0045069 "regulation of
viral genome replication" evidence=IMP] [GO:0045595 "regulation of
cell differentiation" evidence=IMP] [GO:0045664 "regulation of
neuron differentiation" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048536 "spleen development" evidence=IMP] [GO:0048565
"digestive tract development" evidence=IMP] [GO:0048713 "regulation
of oligodendrocyte differentiation" evidence=IMP] [GO:0048730
"epidermis morphogenesis" evidence=IMP] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IMP] [GO:0048812
"neuron projection morphogenesis" evidence=IMP] [GO:0050767
"regulation of neurogenesis" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0051726 "regulation of cell cycle" evidence=IMP]
[GO:0055013 "cardiac muscle cell development" evidence=IMP]
[GO:0060119 "inner ear receptor cell development" evidence=IMP]
[GO:0060253 "negative regulation of glial cell proliferation"
evidence=IMP] [GO:0060576 "intestinal epithelial cell development"
evidence=IGI] [GO:0070173 "regulation of enamel mineralization"
evidence=IMP] [GO:0071335 "hair follicle cell proliferation"
evidence=IMP] [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 MGI:MGI:2177178 GO:GO:0005524
GO:GO:0010070 GO:GO:0005737 GO:GO:0006915 GO:GO:0021987
GO:GO:0043066 GO:GO:0045664 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 GO:GO:0001932 GO:GO:0016075 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 GO:GO:0010626
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W
HOVERGEN:HBG107811 GO:GO:0071335 GO:GO:0060576 GO:GO:0021889
GO:GO:0032290 GO:GO:0031643 GO:GO:0014040 GO:GO:0070173
GO:GO:0048713 EMBL:AF484523 EMBL:AF484524 EMBL:AB081470
EMBL:AF430845 IPI:IPI00227881 UniGene:Mm.21135 PDB:3C4B PDB:3C4T
PDBsum:3C4B PDBsum:3C4T ProteinModelPortal:Q8R418 SMR:Q8R418
DIP:DIP-29721N IntAct:Q8R418 STRING:Q8R418 PhosphoSite:Q8R418
PaxDb:Q8R418 PRIDE:Q8R418 UCSC:uc007oxi.1 InParanoid:Q8R419
EvolutionaryTrace:Q8R418 CleanEx:MM_DICER1 Genevestigator:Q8R418
GermOnline:ENSMUSG00000041415 GO:GO:0060119 GO:GO:2000630
GO:GO:0008593 Uniprot:Q8R418
Length = 1916
Score = 390 (142.3 bits), Expect = 7.1e-57, Sum P(6) = 7.1e-57
Identities = 102/256 (39%), Positives = 141/256 (55%)
Query: 611 ESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSP 670
E +NY F++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY SP
Sbjct: 1664 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1723
Query: 671 GDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTF--GW 728
G LTD+RSA VNN +A +VK+ HK+ S EL+ +D F + LE G
Sbjct: 1724 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFH----VIDDFVKFQLEKNEMQGM 1779
Query: 729 ESET-------------SFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPE 775
+SE PKA+GDI ESL+GAI++DSG + EVV++ P+++P+I
Sbjct: 1780 DSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKF 1839
Query: 776 TMRLQPARELNEYCQKHHFSMKKTVAPRI-NGKAAVTVEVHANGTLFKHTHADADKETAK 834
+ + P + E + + K + A R +GK VTVEV G FK AK
Sbjct: 1840 SANV-PRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKGV--GRSYRIAK 1895
Query: 835 KVASKEVLKSLKASFP 850
A++ L+SLKA+ P
Sbjct: 1896 SAAARRALRSLKANQP 1911
Score = 184 (69.8 bits), Expect = 7.1e-57, Sum P(6) = 7.1e-57
Identities = 39/88 (44%), Positives = 54/88 (61%)
Query: 437 VLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAAL 496
+L+A+T +GF+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 1297 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1356
Query: 497 CKLGCDHKLPGFIRTEPFDPKM-WMIPG 523
+LG LP + FDP + W+ PG
Sbjct: 1357 YRLGKKKGLPSRMVVSIFDPPVNWLPPG 1384
Score = 103 (41.3 bits), Expect = 7.1e-07, Sum P(4) = 7.1e-07
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 620 DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSA 679
+P L+++ALT + +RLE LGD+ L + IT YL+ YP G L+ MRS
Sbjct: 1293 NPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1349
Query: 680 SVNN-DCYALSSVKHGL 695
V+N + Y L K GL
Sbjct: 1350 KVSNCNLYRLGK-KKGL 1365
Score = 95 (38.5 bits), Expect = 7.1e-57, Sum P(6) = 7.1e-57
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 49 TLYLPNNCPIQTVIA---QGNIKTLKQTACLEACKKLHQIGALTDNLLP---DVVVEEHD 102
TLYLP N P++ I +++ ++ L C+KLH+IG L ++L+P + V E +
Sbjct: 666 TLYLPINSPLRASIVGPPMDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEE 725
Query: 103 AQKHGNE 109
H E
Sbjct: 726 LDLHDEE 732
Score = 87 (35.7 bits), Expect = 7.1e-57, Sum P(6) = 7.1e-57
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 550 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 586
+ K++AD VEAL+G +L++ GE +FL +G+KV
Sbjct: 1550 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1586
Score = 81 (33.6 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 26/132 (19%), Positives = 60/132 (45%)
Query: 453 ESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTE 512
+ LE LGD+ L Y ++ L++ + H G+L+ + +++N L + + +
Sbjct: 1696 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKA- 1754
Query: 513 PFDPKMWMIPGDN-SGSYELND-HSLFNERKIYVTGRKKVKS----KTVADVVEALIGAF 566
P+++ + D E N+ + +E + +K + K + D+ E+L GA
Sbjct: 1755 -VSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1813
Query: 567 LSTGGENVGLIF 578
G ++ +++
Sbjct: 1814 YMDSGMSLEVVW 1825
Score = 54 (24.1 bits), Expect = 7.1e-57, Sum P(6) = 7.1e-57
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 2 FDPSHTVCSFIQSRGRARMQNSDYLLM 28
FD S++QS+GRAR S+Y+++
Sbjct: 537 FDLPTEYRSYVQSKGRARAPISNYVML 563
Score = 53 (23.7 bits), Expect = 7.1e-57, Sum P(6) = 7.1e-57
Identities = 33/127 (25%), Positives = 52/127 (40%)
Query: 298 PHSGQIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLC-FDQELL----LNGR 352
PH +Y+ V L S F + T+ ++Y+ +Y + L +Q LL + R
Sbjct: 942 PHR---FYVADVYTDLTPLSKFPSPEYE--TFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 996
Query: 353 RIFHAQNYLS---KCRQEKQREPSKISFE-------LPPELCRIIMGPMSLSTFYSFTFV 402
+L+ K E K +E L PELC I P+ S + +
Sbjct: 997 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAI--HPIPASLWRKAVCL 1054
Query: 403 PSIMHRL 409
PSI++RL
Sbjct: 1055 PSILYRL 1061
Score = 46 (21.3 bits), Expect = 1.6e-50, Sum P(5) = 1.6e-50
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 196 DKVLLCRRFQIALFRVIMDHN 216
D + R++Q+ L +DHN
Sbjct: 39 DNIYTPRKYQVELLEAALDHN 59
>UNIPROTKB|B3DLA6 [details] [associations]
symbol:dicer1 "Endoribonuclease Dicer" species:8364
"Xenopus (Silurana) tropicalis" [GO:0016442 "RNA-induced silencing
complex" evidence=ISS] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EU338242 EMBL:BC167373 RefSeq:NP_001123390.2
UniGene:Str.39540 STRING:B3DLA6 GeneID:100170154 KEGG:xtr:100170154
Xenbase:XB-GENE-491114 Uniprot:B3DLA6
Length = 1893
Score = 386 (140.9 bits), Expect = 1.5e-56, Sum P(6) = 1.5e-56
Identities = 102/284 (35%), Positives = 152/284 (53%)
Query: 583 GIKVDFVNVPYERQFQ-VQAERLVN-----VRHLESLLNYSFRDPSLLVEALTHGSYMLP 636
GI ++ +P F+ AE+ ++ + E +NY F++ + L++A TH SY
Sbjct: 1607 GIDYGYLKIPPRCMFEHPDAEKTLDHLISGFENFEKKINYPFKNKAYLLQAFTHASYHYN 1666
Query: 637 EIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLH 696
I CYQRLEFLGDA+LDYLIT +LY SPG LTD+RSA VNN +A +VK+ H
Sbjct: 1667 TITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYH 1726
Query: 697 KHILHASQELYK----WINITVDSFERLSLESTFGW-------ESETSFPKALGDIIESL 745
K+ S EL+ ++ ++ E ++S E + PKA+GDI ESL
Sbjct: 1727 KYFKAISPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESL 1786
Query: 746 SGAIFVDSGCNKEVVFESIRPLLEPMITPETMRLQPARELNEYCQKHHFSMKKTVAPRI- 804
+GAI++DSG + E V+ P+++P+I + + P + E + + K + A R
Sbjct: 1787 AGAIYMDSGMSLETVWHVYYPMMQPLIEKFSANV-PRSPVRELLEMEPETAKFSPAERTY 1845
Query: 805 NGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKAS 848
+GK VTVEV G FK AK A++ L+SLKA+
Sbjct: 1846 DGKVRVTVEVVGKGK-FKGV--GRSYRIAKSAAARRALRSLKAN 1886
Score = 182 (69.1 bits), Expect = 1.5e-56, Sum P(6) = 1.5e-56
Identities = 43/106 (40%), Positives = 60/106 (56%)
Query: 437 VLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAAL 496
+L+A+T +GF+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 1274 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1333
Query: 497 CKLGCDHKLPGFIRTEPFDPKM-WMIPG------DNSGSYELNDHS 535
+LG P + FDP + W+ PG NS +E N+ S
Sbjct: 1334 YRLGKKKGSPSRMVVSIFDPPVNWLPPGYIVNQDKNSDKWESNETS 1379
Score = 103 (41.3 bits), Expect = 3.4e-07, Sum P(4) = 3.4e-07
Identities = 29/92 (31%), Positives = 45/92 (48%)
Query: 620 DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSA 679
+P L+++ALT + +RLE LGD+ L + IT YL+ YP G L+ MRS
Sbjct: 1270 NPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1326
Query: 680 SVNN-DCYALSSVKHGLHKHILHASQELYKWI 710
V+N + Y L K + ++ W+
Sbjct: 1327 KVSNCNLYRLGKKKGSPSRMVVSIFDPPVNWL 1358
Score = 96 (38.9 bits), Expect = 1.5e-56, Sum P(6) = 1.5e-56
Identities = 27/67 (40%), Positives = 34/67 (50%)
Query: 49 TLYLPNNCPIQTVIAQG--NIKTLKQTA-CLEACKKLHQIGALTDNLLP---DVVVEEHD 102
TLYLP N P++ I N L A L CKKLH+IG L D+L+P + V E +
Sbjct: 657 TLYLPINSPLRAPIVGPPMNCGRLADRAVALICCKKLHEIGELDDHLMPVGKETVKYEEE 716
Query: 103 AQKHGNE 109
H E
Sbjct: 717 LDLHDEE 723
Score = 87 (35.7 bits), Expect = 1.5e-56, Sum P(6) = 1.5e-56
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 550 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 586
+ K++AD VEAL+G +L++ GE +FL +G+KV
Sbjct: 1528 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1564
Score = 80 (33.2 bits), Expect = 6.1e-05, Sum P(4) = 6.1e-05
Identities = 26/132 (19%), Positives = 59/132 (44%)
Query: 453 ESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTE 512
+ LE LGD+ L Y ++ L++ + H G+L+ + +++N L + + +
Sbjct: 1673 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKA- 1731
Query: 513 PFDPKMWMIPGDN-SGSYELND-HSLFNERKIYVTGRKKVKS----KTVADVVEALIGAF 566
P+++ + D E N+ + +E + +K + K + D+ E+L GA
Sbjct: 1732 -ISPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1790
Query: 567 LSTGGENVGLIF 578
G ++ ++
Sbjct: 1791 YMDSGMSLETVW 1802
Score = 56 (24.8 bits), Expect = 1.5e-56, Sum P(6) = 1.5e-56
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 2 FDPSHTVCSFIQSRGRARMQNSDYLLM 28
FD S++QS+GRAR S+Y+++
Sbjct: 528 FDLPSEYRSYVQSKGRARAPISNYIML 554
Score = 53 (23.7 bits), Expect = 1.5e-56, Sum P(6) = 1.5e-56
Identities = 33/127 (25%), Positives = 52/127 (40%)
Query: 298 PHSGQIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLC-FDQELL----LNGR 352
PH +Y+ V L S F + T+ ++Y+ +Y + L +Q LL + R
Sbjct: 936 PHR---FYVADVYTDLTPLSKFPSPEYE--TFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 990
Query: 353 RIFHAQNYLS---KCRQEKQREPSKISFE-------LPPELCRIIMGPMSLSTFYSFTFV 402
+L+ K E K +E L PELC I P+ S + +
Sbjct: 991 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAI--HPVPASLWRKAVCL 1048
Query: 403 PSIMHRL 409
PSI++RL
Sbjct: 1049 PSILYRL 1055
Score = 46 (21.3 bits), Expect = 6.7e-50, Sum P(5) = 6.7e-50
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 196 DKVLLCRRFQIALFRVIMDHN 216
D + R++Q+ L +DHN
Sbjct: 29 DNIYTPRKYQVELLEAALDHN 49
Score = 40 (19.1 bits), Expect = 8.8e-41, Sum P(5) = 8.8e-41
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 244 EQSIDWE-----PVASLSFPCD 260
+Q+ +W P+ S FPCD
Sbjct: 1450 DQNYEWRAPKKPPLESSQFPCD 1471
>UNIPROTKB|Q9UPY3 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0009791 "post-embryonic development" evidence=IEA] [GO:0010070
"zygote asymmetric cell division" evidence=IEA] [GO:0019827 "stem
cell maintenance" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0021889 "olfactory bulb
interneuron differentiation" evidence=IEA] [GO:0021987 "cerebral
cortex development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0035264
"multicellular organism growth" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045069
"regulation of viral genome replication" evidence=IEA] [GO:0045664
"regulation of neuron differentiation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048536 "spleen development"
evidence=IEA] [GO:0048713 "regulation of oligodendrocyte
differentiation" evidence=IEA] [GO:0048754 "branching morphogenesis
of an epithelial tube" evidence=IEA] [GO:0051225 "spindle assembly"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051726 "regulation of cell cycle" evidence=IEA] [GO:0055013
"cardiac muscle cell development" evidence=IEA] [GO:0060119 "inner
ear receptor cell development" evidence=IEA] [GO:0060576
"intestinal epithelial cell development" evidence=IEA] [GO:0070173
"regulation of enamel mineralization" evidence=IEA] [GO:0071335
"hair follicle cell proliferation" evidence=IEA] [GO:2000630
"positive regulation of miRNA metabolic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0031054 "pre-miRNA processing"
evidence=IDA] [GO:0030423 "targeting of mRNA for destruction
involved in RNA interference" evidence=IMP] [GO:0030422 "production
of siRNA involved in RNA interference" evidence=IDA] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0048812 "neuron projection morphogenesis" evidence=ISS]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISS] [GO:0031643 "positive regulation of myelination"
evidence=ISS] [GO:0021675 "nerve development" evidence=ISS]
[GO:0014040 "positive regulation of Schwann cell differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=ISS] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISS] Reactome:REACT_71 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005829 GO:GO:0005524
GO:GO:0010070 GO:GO:0006915 GO:GO:0021987 GO:GO:0043066
GO:GO:0045664 EMBL:CH471061 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0010626 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:23405
HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W EMBL:AB028449 EMBL:HM595745
EMBL:AJ132261 EMBL:AB023145 EMBL:AL356017 EMBL:AL390254
EMBL:BC150287 IPI:IPI00219036 IPI:IPI00977554 RefSeq:NP_001182502.1
RefSeq:NP_001258211.1 RefSeq:NP_085124.2 RefSeq:NP_803187.1
UniGene:Hs.87889 PDB:2EB1 PDBsum:2EB1 ProteinModelPortal:Q9UPY3
SMR:Q9UPY3 DIP:DIP-29664N IntAct:Q9UPY3 MINT:MINT-1957525
STRING:Q9UPY3 PhosphoSite:Q9UPY3 DMDM:257051056 PaxDb:Q9UPY3
PRIDE:Q9UPY3 Ensembl:ENST00000343455 Ensembl:ENST00000393063
Ensembl:ENST00000526495 Ensembl:ENST00000527414
Ensembl:ENST00000541352 GeneID:23405 KEGG:hsa:23405 UCSC:uc001ydv.2
GeneCards:GC14M095552 HGNC:HGNC:17098 HPA:HPA000694 MIM:138800
MIM:601200 MIM:606241 neXtProt:NX_Q9UPY3 Orphanet:276399
Orphanet:99916 Orphanet:284343 PharmGKB:PA38437 HOVERGEN:HBG107811
InParanoid:Q9UPY3 OMA:FLEYDQE PhylomeDB:Q9UPY3 BRENDA:3.1.26.3
ChiTaRS:DICER1 EvolutionaryTrace:Q9UPY3 GenomeRNAi:23405
NextBio:45577 ArrayExpress:Q9UPY3 Bgee:Q9UPY3 CleanEx:HS_DICER1
Genevestigator:Q9UPY3 GermOnline:ENSG00000100697 GO:GO:0071335
GO:GO:0060576 GO:GO:0021889 GO:GO:0032290 GO:GO:0031643
GO:GO:0014040 GO:GO:0070173 GO:GO:0048713 Uniprot:Q9UPY3
Length = 1922
Score = 385 (140.6 bits), Expect = 1.7e-56, Sum P(6) = 1.7e-56
Identities = 97/254 (38%), Positives = 140/254 (55%)
Query: 609 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTL 668
+ E +NY F++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 1668 NFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1727
Query: 669 SPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYK----WINITVDSFERLSLES 724
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ ++ ++ E ++S
Sbjct: 1728 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDS 1787
Query: 725 TFGW-------ESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETM 777
E + PKA+GDI ESL+GAI++DSG + E V++ P++ P+I +
Sbjct: 1788 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSA 1847
Query: 778 RLQPARELNEYCQKHHFSMKKTVAPRI-NGKAAVTVEVHANGTLFKHTHADADKETAKKV 836
+ P + E + + K + A R +GK VTVEV G FK AK
Sbjct: 1848 NV-PRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKGV--GRSYRIAKSA 1903
Query: 837 ASKEVLKSLKASFP 850
A++ L+SLKA+ P
Sbjct: 1904 AARRALRSLKANQP 1917
Score = 184 (69.8 bits), Expect = 1.7e-56, Sum P(6) = 1.7e-56
Identities = 39/88 (44%), Positives = 54/88 (61%)
Query: 437 VLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAAL 496
+L+A+T +GF+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 1297 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1356
Query: 497 CKLGCDHKLPGFIRTEPFDPKM-WMIPG 523
+LG LP + FDP + W+ PG
Sbjct: 1357 YRLGKKKGLPSRMVVSIFDPPVNWLPPG 1384
Score = 104 (41.7 bits), Expect = 3.6e-07, Sum P(4) = 3.6e-07
Identities = 33/87 (37%), Positives = 46/87 (52%)
Query: 614 LNYSFR----DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLS 669
+ YS R +P L+++ALT + +RLE LGD+ L + IT YL+ YP
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAH 1339
Query: 670 PGDLTDMRSASVNN-DCYALSSVKHGL 695
G L+ MRS V+N + Y L K GL
Sbjct: 1340 EGRLSYMRSKKVSNCNLYRLGK-KKGL 1365
Score = 96 (38.9 bits), Expect = 1.7e-56, Sum P(6) = 1.7e-56
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 49 TLYLPNNCPIQTVIA---QGNIKTLKQTACLEACKKLHQIGALTDNLLP---DVVVEEHD 102
TLYLP N P++ I ++ ++ L C+KLH+IG L D+L+P + V E +
Sbjct: 666 TLYLPINSPLRASIVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEE 725
Query: 103 AQKHGNE 109
H E
Sbjct: 726 LDLHDEE 732
Score = 87 (35.7 bits), Expect = 1.7e-56, Sum P(6) = 1.7e-56
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 550 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 586
+ K++AD VEAL+G +L++ GE +FL +G+KV
Sbjct: 1554 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1590
Score = 79 (32.9 bits), Expect = 0.00010, Sum P(4) = 0.00010
Identities = 26/132 (19%), Positives = 59/132 (44%)
Query: 453 ESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTE 512
+ LE LGD+ L Y ++ L++ + H G+L+ + +++N L + + +
Sbjct: 1702 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKA- 1760
Query: 513 PFDPKMWMIPGDN-SGSYELND-HSLFNERKIYVTGRKKVKS----KTVADVVEALIGAF 566
P+++ + D E N+ + +E + +K + K + D+ E+L GA
Sbjct: 1761 -VSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1819
Query: 567 LSTGGENVGLIF 578
G ++ ++
Sbjct: 1820 YMDSGMSLETVW 1831
Score = 55 (24.4 bits), Expect = 1.7e-56, Sum P(6) = 1.7e-56
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 2 FDPSHTVCSFIQSRGRARMQNSDYLLM 28
FD S++QS+GRAR S+Y+++
Sbjct: 537 FDLPTEYRSYVQSKGRARAPISNYIML 563
Score = 53 (23.7 bits), Expect = 1.7e-56, Sum P(6) = 1.7e-56
Identities = 33/127 (25%), Positives = 52/127 (40%)
Query: 298 PHSGQIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLC-FDQELL----LNGR 352
PH +Y+ V L S F + T+ ++Y+ +Y + L +Q LL + R
Sbjct: 942 PHR---FYVADVYTDLTPLSKFPSPEYE--TFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 996
Query: 353 RIFHAQNYLS---KCRQEKQREPSKISFE-------LPPELCRIIMGPMSLSTFYSFTFV 402
+L+ K E K +E L PELC I P+ S + +
Sbjct: 997 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAI--HPIPASLWRKAVCL 1054
Query: 403 PSIMHRL 409
PSI++RL
Sbjct: 1055 PSILYRL 1061
Score = 46 (21.3 bits), Expect = 6.1e-50, Sum P(5) = 6.1e-50
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 196 DKVLLCRRFQIALFRVIMDHN 216
D + R++Q+ L +DHN
Sbjct: 39 DNIYTPRKYQVELLEAALDHN 59
>UNIPROTKB|F1NP11 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0010070 "zygote asymmetric cell division"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0043066 GO:GO:0051225 GO:GO:0045595
Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0000122 GO:GO:0051726
GO:GO:0003725 GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0008026
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 OMA:FLEYDQE GO:GO:0071335
GO:GO:0031643 GO:GO:0070173 EMBL:AADN02003674 IPI:IPI00603674
Ensembl:ENSGALT00000017910 ArrayExpress:F1NP11 Uniprot:F1NP11
Length = 1925
Score = 391 (142.7 bits), Expect = 1.2e-55, Sum P(6) = 1.2e-55
Identities = 98/254 (38%), Positives = 142/254 (55%)
Query: 609 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTL 668
+ E +NYSF++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 1671 NFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1730
Query: 669 SPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYK----WINITVDSFERLSLES 724
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ ++ ++ E ++S
Sbjct: 1731 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDS 1790
Query: 725 TFGW-------ESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETM 777
E + PKA+GDI ESL+GAI++DSG + E+V++ P++ P+I +
Sbjct: 1791 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSA 1850
Query: 778 RLQPARELNEYCQKHHFSMKKTVAPRI-NGKAAVTVEVHANGTLFKHTHADADKETAKKV 836
+ P + E + + K + A R +GK VTVEV G FK AK
Sbjct: 1851 NV-PRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKGV--GRSYRIAKSA 1906
Query: 837 ASKEVLKSLKASFP 850
A++ L+SLKA+ P
Sbjct: 1907 AARRALRSLKANQP 1920
Score = 184 (69.8 bits), Expect = 1.2e-55, Sum P(6) = 1.2e-55
Identities = 39/88 (44%), Positives = 54/88 (61%)
Query: 437 VLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAAL 496
+L+A+T +GF+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 1302 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1361
Query: 497 CKLGCDHKLPGFIRTEPFDPKM-WMIPG 523
+LG LP + FDP + W+ PG
Sbjct: 1362 YRLGKKKGLPSRMVVSIFDPPVNWLPPG 1389
Score = 103 (41.3 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 620 DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSA 679
+P L+++ALT + +RLE LGD+ L + IT YL+ YP G L+ MRS
Sbjct: 1298 NPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1354
Query: 680 SVNN-DCYALSSVKHGL 695
V+N + Y L K GL
Sbjct: 1355 KVSNCNLYRLGK-KKGL 1370
Score = 87 (35.7 bits), Expect = 1.2e-55, Sum P(6) = 1.2e-55
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 550 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 586
+ K++AD VEAL+G +L++ GE +FL +G+KV
Sbjct: 1557 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1593
Score = 81 (33.6 bits), Expect = 1.2e-55, Sum P(6) = 1.2e-55
Identities = 31/109 (28%), Positives = 49/109 (44%)
Query: 49 TLYLPNNCPIQTVIA---QGNIKTLKQTACLEACKKLHQI---GALTDNLLP---DVVVE 99
TLYLP N P++ I + ++ L C+KLH+I G L D+L+P + V
Sbjct: 666 TLYLPINSPLRASIVGPPMSCARLAERVVALICCEKLHKIEYLGELDDHLMPVGKETVKY 725
Query: 100 EHDAQKHGNE-------PYDAEHPIYFPPELVNQCPQDT--KITYHCYL 139
E + H E P + +P + + +C +D+ K CYL
Sbjct: 726 EEELDLHDEEETSVPGRPGSTKRRQCYP-KAIPECLRDSYPKPDQPCYL 773
Score = 55 (24.4 bits), Expect = 1.2e-55, Sum P(6) = 1.2e-55
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 2 FDPSHTVCSFIQSRGRARMQNSDYLLM 28
FD S++QS+GRAR S+Y+++
Sbjct: 537 FDLPTEYRSYVQSKGRARAPISNYIML 563
Score = 53 (23.7 bits), Expect = 1.2e-55, Sum P(6) = 1.2e-55
Identities = 33/127 (25%), Positives = 52/127 (40%)
Query: 298 PHSGQIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLC-FDQELL----LNGR 352
PH +Y+ V L S F + T+ ++Y+ +Y + L +Q LL + R
Sbjct: 946 PHR---FYVADVYTDLTPLSKFPSPEYE--TFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 1000
Query: 353 RIFHAQNYLS---KCRQEKQREPSKISFE-------LPPELCRIIMGPMSLSTFYSFTFV 402
+L+ K E K +E L PELC I P+ S + +
Sbjct: 1001 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAI--HPIPASLWRKAVCL 1058
Query: 403 PSIMHRL 409
PSI++RL
Sbjct: 1059 PSILYRL 1065
Score = 46 (21.3 bits), Expect = 1.3e-50, Sum P(5) = 1.3e-50
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 196 DKVLLCRRFQIALFRVIMDHN 216
D + R++Q+ L +DHN
Sbjct: 39 DNIYTPRKYQVELLEAALDHN 59
Score = 38 (18.4 bits), Expect = 1.7e-35, Sum P(4) = 1.7e-35
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 432 IPTSKVLEAITTKKCQEGFHLESLET 457
+ T K +E I KC + ET
Sbjct: 576 LKTYKAIEKILRNKCSKSVDTSETET 601
Score = 37 (18.1 bits), Expect = 5.2e-54, Sum P(6) = 5.2e-54
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 353 RIFHAQNYLSKCRQEKQREPS 373
R F N L+ CRQE +P+
Sbjct: 1199 RDFCQGNQLNYCRQEIPVQPT 1219
>UNIPROTKB|E2RIN4 [details] [associations]
symbol:DICER1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000630 "positive regulation of miRNA
metabolic process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 CTD:23405 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:AAEX03005955 RefSeq:XP_868526.2
Ensembl:ENSCAFT00000028082 GeneID:480426 KEGG:cfa:480426
Uniprot:E2RIN4
Length = 1923
Score = 386 (140.9 bits), Expect = 4.1e-52, Sum P(5) = 4.1e-52
Identities = 97/254 (38%), Positives = 141/254 (55%)
Query: 609 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTL 668
+ E +NY F++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 1669 NFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1728
Query: 669 SPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYK----WINITVDSFERLSLES 724
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ ++ ++ E ++S
Sbjct: 1729 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDS 1788
Query: 725 TFGW-------ESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETM 777
E + PKA+GDI ESL+GAI++DSG + E+V++ P++ P+I +
Sbjct: 1789 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSA 1848
Query: 778 RLQPARELNEYCQKHHFSMKKTVAPRI-NGKAAVTVEVHANGTLFKHTHADADKETAKKV 836
+ P + E + + K + A R +GK VTVEV G FK AK
Sbjct: 1849 NV-PRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKGV--GRSYRIAKSA 1904
Query: 837 ASKEVLKSLKASFP 850
A++ L+SLKA+ P
Sbjct: 1905 AARRALRSLKANQP 1918
Score = 184 (69.8 bits), Expect = 4.1e-52, Sum P(5) = 4.1e-52
Identities = 39/88 (44%), Positives = 54/88 (61%)
Query: 437 VLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAAL 496
+L+A+T +GF+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 1298 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1357
Query: 497 CKLGCDHKLPGFIRTEPFDPKM-WMIPG 523
+LG LP + FDP + W+ PG
Sbjct: 1358 YRLGKKKGLPSRMVVSIFDPPVNWLPPG 1385
Score = 103 (41.3 bits), Expect = 2.9e-07, Sum P(4) = 2.9e-07
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 620 DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSA 679
+P L+++ALT + +RLE LGD+ L + IT YL+ YP G L+ MRS
Sbjct: 1294 NPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1350
Query: 680 SVNN-DCYALSSVKHGL 695
V+N + Y L K GL
Sbjct: 1351 KVSNCNLYRLGK-KKGL 1366
Score = 101 (40.6 bits), Expect = 2.0e-21, Sum P(5) = 2.0e-21
Identities = 37/119 (31%), Positives = 59/119 (49%)
Query: 550 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV---------DFVNVPYERQFQVQ 600
+ K++AD VEAL+G +L++ GE +FL +G+KV + P F Q
Sbjct: 1555 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVMKRTDREKTMCPPRENFSSQ 1614
Query: 601 AERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRC-YQRLEFLGDAVLDYLIT 658
+ L R S+ S R PS+L + L +G +P PRC + + D L++LI+
Sbjct: 1615 QKNLSGGRAAASVA--SLR-PSVLKD-LEYGCLKIP--PRCMFDHPD--ADKTLNHLIS 1665
Score = 98 (39.6 bits), Expect = 4.1e-52, Sum P(5) = 4.1e-52
Identities = 31/106 (29%), Positives = 50/106 (47%)
Query: 49 TLYLPNNCPIQTVIA---QGNIKTLKQTACLEACKKLHQIGALTDNLLP---DVVVEEHD 102
TLYLP N P++ I ++ ++ L C+KLH+IG L D+L+P + V E +
Sbjct: 666 TLYLPINSPLRASIVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEE 725
Query: 103 AQKHGNE-------PYDAEHPIYFPPELVNQCPQDT--KITYHCYL 139
H E P + +P + + +C +D+ K CYL
Sbjct: 726 LDLHDEEETSVPGRPGSTKRRQCYP-KAIPECLRDSYPKPDQPCYL 770
Score = 82 (33.9 bits), Expect = 3.3e-05, Sum P(4) = 3.3e-05
Identities = 26/132 (19%), Positives = 60/132 (45%)
Query: 453 ESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTE 512
+ LE LGD+ L Y ++ L++ + H G+L+ + +++N L + + +
Sbjct: 1703 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKA- 1761
Query: 513 PFDPKMWMIPGDN-SGSYELND-HSLFNERKIYVTGRKKVKS----KTVADVVEALIGAF 566
P+++ + D E N+ + +E + +K + K + D+ E+L GA
Sbjct: 1762 -VSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1820
Query: 567 LSTGGENVGLIF 578
G ++ +++
Sbjct: 1821 YMDSGMSLEMVW 1832
Score = 55 (24.4 bits), Expect = 4.1e-52, Sum P(5) = 4.1e-52
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 2 FDPSHTVCSFIQSRGRARMQNSDYLLM 28
FD S++QS+GRAR S+Y+++
Sbjct: 537 FDLPTEYRSYVQSKGRARAPISNYIML 563
Score = 53 (23.7 bits), Expect = 4.1e-52, Sum P(5) = 4.1e-52
Identities = 33/127 (25%), Positives = 52/127 (40%)
Query: 298 PHSGQIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLC-FDQELL----LNGR 352
PH +Y+ V L S F + T+ ++Y+ +Y + L +Q LL + R
Sbjct: 942 PHR---FYVADVYTDLTPLSKFPSPEYE--TFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 996
Query: 353 RIFHAQNYLS---KCRQEKQREPSKISFE-------LPPELCRIIMGPMSLSTFYSFTFV 402
+L+ K E K +E L PELC I P+ S + +
Sbjct: 997 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAI--HPIPASLWRKAVCL 1054
Query: 403 PSIMHRL 409
PSI++RL
Sbjct: 1055 PSILYRL 1061
Score = 46 (21.3 bits), Expect = 1.4e-45, Sum P(4) = 1.4e-45
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 196 DKVLLCRRFQIALFRVIMDHN 216
D + R++Q+ L +DHN
Sbjct: 39 DNIYTPRKYQVELLEAALDHN 59
>UNIPROTKB|B3KRG4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AL356017
EMBL:AL390254 UniGene:Hs.87889 HGNC:HGNC:17098 ChiTaRS:DICER1
EMBL:AK091513 IPI:IPI01025259 SMR:B3KRG4 STRING:B3KRG4
Ensembl:ENST00000556045 UCSC:uc001ydy.1 HOVERGEN:HBG092134
Uniprot:B3KRG4
Length = 820
Score = 385 (140.6 bits), Expect = 5.5e-51, Sum P(3) = 5.5e-51
Identities = 97/254 (38%), Positives = 140/254 (55%)
Query: 609 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTL 668
+ E +NY F++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 566 NFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 625
Query: 669 SPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYK----WINITVDSFERLSLES 724
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ ++ ++ E ++S
Sbjct: 626 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDS 685
Query: 725 TFGW-------ESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETM 777
E + PKA+GDI ESL+GAI++DSG + E V++ P++ P+I +
Sbjct: 686 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSA 745
Query: 778 RLQPARELNEYCQKHHFSMKKTVAPRI-NGKAAVTVEVHANGTLFKHTHADADKETAKKV 836
+ P + E + + K + A R +GK VTVEV G FK AK
Sbjct: 746 NV-PRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKGV--GRSYRIAKSA 801
Query: 837 ASKEVLKSLKASFP 850
A++ L+SLKA+ P
Sbjct: 802 AARRALRSLKANQP 815
Score = 184 (69.8 bits), Expect = 5.5e-51, Sum P(3) = 5.5e-51
Identities = 39/88 (44%), Positives = 54/88 (61%)
Query: 437 VLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAAL 496
+L+A+T +GF+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 195 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 254
Query: 497 CKLGCDHKLPGFIRTEPFDPKM-WMIPG 523
+LG LP + FDP + W+ PG
Sbjct: 255 YRLGKKKGLPSRMVVSIFDPPVNWLPPG 282
Score = 87 (35.7 bits), Expect = 5.5e-51, Sum P(3) = 5.5e-51
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 550 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 586
+ K++AD VEAL+G +L++ GE +FL +G+KV
Sbjct: 452 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 488
>FB|FBgn0039016 [details] [associations]
symbol:Dcr-1 "Dicer-1" species:7227 "Drosophila melanogaster"
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0016443 "bidentate ribonuclease III activity" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016246 "RNA interference" evidence=IDA;IMP;TAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IMP;TAS] [GO:0035087 "siRNA loading
onto RISC involved in RNA interference" evidence=IMP] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0031054
"pre-miRNA processing" evidence=IDA;IMP;TAS] [GO:0035195 "gene
silencing by miRNA" evidence=TAS] [GO:0042078 "germ-line stem cell
division" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0045448 "mitotic cell
cycle, embryonic" evidence=IMP] [GO:0007279 "pole cell formation"
evidence=IMP] [GO:0033227 "dsRNA transport" evidence=IMP]
[GO:0007367 "segment polarity determination" evidence=IGI]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0070883
"pre-miRNA binding" evidence=IDA] [GO:0003727 "single-stranded RNA
binding" evidence=IDA] [GO:0030727 "germarium-derived female
germ-line cyst formation" evidence=IMP] [GO:0007294
"germarium-derived oocyte fate determination" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
EMBL:AE014297 GO:GO:0005524 GO:GO:0005737 GO:GO:0007294
GO:GO:0045448 GO:GO:0046872 GO:GO:0003727 GO:GO:0048813
GO:GO:0003725 GO:GO:0004386 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0033227 GO:GO:0007279 GO:GO:0030422
GO:GO:0007367 GO:GO:0035087 GO:GO:0030727 GO:GO:0042078 KO:K11592
Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:42693
GeneTree:ENSGT00510000046789 EMBL:AY050230 RefSeq:NP_524453.1
UniGene:Dm.1283 ProteinModelPortal:Q9VCU9 SMR:Q9VCU9 DIP:DIP-23028N
IntAct:Q9VCU9 MINT:MINT-923321 STRING:Q9VCU9 PaxDb:Q9VCU9
PRIDE:Q9VCU9 EnsemblMetazoa:FBtr0084324 GeneID:42693
KEGG:dme:Dmel_CG4792 UCSC:CG4792-RA FlyBase:FBgn0039016
eggNOG:COG0571 InParanoid:Q9VCU9 OMA:FLTPRYV OrthoDB:EOG44B8H0
PhylomeDB:Q9VCU9 GenomeRNAi:42693 NextBio:830091 Bgee:Q9VCU9
GermOnline:CG4792 GO:GO:0016443 GO:GO:0070883 Uniprot:Q9VCU9
Length = 2249
Score = 354 (129.7 bits), Expect = 2.8e-50, Sum P(6) = 2.8e-50
Identities = 99/256 (38%), Positives = 134/256 (52%)
Query: 604 LVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYN 663
L E L Y FRD S L++A+TH SY + CYQRLEFLGDAVLDYLIT +LY
Sbjct: 1990 LSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYE 2049
Query: 664 KYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELY----KWINITVDSFER 719
SPG LTD+RSA VNN +A +V+HG HK H S L +++ I ++
Sbjct: 2050 DPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHC 2109
Query: 720 LSLESTFGWESE------TSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMIT 773
+S E E E PKALGD+ ES++GAIF+DS + +VV+ ++ P I
Sbjct: 2110 ISEEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIE 2169
Query: 774 P--ETMRLQPARELNEY-CQKHHFSMKKTVAPRINGKAAVTVEVHANGTLFKHTHADADK 830
++ P REL E + F + +A + VTV+V GT F+ +
Sbjct: 2170 QFSNSVPKSPIRELLELEPETAKFGKPEKLAD--GRRVRVTVDVFCKGT-FRGI--GRNY 2224
Query: 831 ETAKKVASKEVLKSLK 846
AK A+K L+ LK
Sbjct: 2225 RIAKCTAAKCALRQLK 2240
Score = 171 (65.3 bits), Expect = 2.8e-50, Sum P(6) = 2.8e-50
Identities = 36/89 (40%), Positives = 55/89 (61%)
Query: 435 SKVLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNA 494
S +L+A+T +G +LE LET+GDSFLKYA + L+ TY+N HEG LS + + ++N
Sbjct: 1724 SIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANL 1783
Query: 495 ALCKLGCDHKLPGFIRTEPFDPK-MWMIP 522
L +LG +L ++ F+P W+ P
Sbjct: 1784 NLYRLGRRKRLGEYMIATKFEPHDNWLPP 1812
Score = 102 (41.0 bits), Expect = 6.3e-06, Sum P(4) = 6.3e-06
Identities = 33/100 (33%), Positives = 52/100 (52%)
Query: 613 LLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGD 672
L+ + PS++++ALT S I +RLE +GD+ L Y IT YLY Y + G
Sbjct: 1715 LVGHPGPSPSIILQALTM-SNANDGIN--LERLETIGDSFLKYAITTYLYITYENVHEGK 1771
Query: 673 LTDMRSASVNN-DCYALSSVKHGLHKHILHASQELY-KWI 710
L+ +RS V N + Y L K L ++++ E + W+
Sbjct: 1772 LSHLRSKQVANLNLYRLGRRKR-LGEYMIATKFEPHDNWL 1810
Score = 88 (36.0 bits), Expect = 0.00016, Sum P(4) = 0.00016
Identities = 36/154 (23%), Positives = 61/154 (39%)
Query: 453 ESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTE 512
+ LE LGD+ L Y ++ L++ + H G L+ + +++N L H F R
Sbjct: 2029 QRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRH- 2087
Query: 513 PFDPKMWMIPGDNSGSYELNDHSLFNERKIYVTGRKKVKSKTVADVVEALIGAFLSTGGE 572
P + + + N H + E Y+ ++ +V +AL F S G
Sbjct: 2088 -LSPGLNDVIDRFVRIQQENGHCISEE--YYLLSEEECDDAEDVEVPKALGDVFESIAGA 2144
Query: 573 NVGLIFLDRIGIKVDFVNVPYERQFQVQAERLVN 606
IFLD + +D V Y + E+ N
Sbjct: 2145 ----IFLDS-NMSLDVVWHVYSNMMSPEIEQFSN 2173
Score = 87 (35.7 bits), Expect = 2.8e-50, Sum P(6) = 2.8e-50
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 524 DNSGSYELNDHSLFNERKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIG 583
D+S ND S F + + + K++AD VEALIGA+L G L+F+ +G
Sbjct: 1875 DDSND-SCNDFSCFIPYNL--VSQHSIPDKSIADCVEALIGAYLIECGPRGALLFMAWLG 1931
Query: 584 IKVDFVNVPYERQ 596
++V +P RQ
Sbjct: 1932 VRV----LPITRQ 1940
Score = 76 (31.8 bits), Expect = 2.8e-50, Sum P(6) = 2.8e-50
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 49 TLYLPNNCPIQTVIAQGNIKT---LKQTACLEACKKLHQIGALTDNLLP 94
TL LP N P++ I + T ++ A L+AC +LH+IG L D L P
Sbjct: 864 TLRLPINSPLKHDIVGLPMPTQTLARRLAALQACVELHRIGELDDQLQP 912
Score = 64 (27.6 bits), Expect = 2.8e-50, Sum P(6) = 2.8e-50
Identities = 29/123 (23%), Positives = 56/123 (45%)
Query: 302 QIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLCFDQELLLN-----GRRIFH 356
Q +Y+ + HL+ S F ++ T+K +Y +YG+ + + LL+ R F
Sbjct: 1147 QYFYVAEICPHLSPLSCFPGDNYR--TFKHYYLVKYGLTIQNTSQPLLDVDHTSARLNFL 1204
Query: 357 AQNYLSK------CRQEKQREPSKISFE----LPPELCRIIMGPMSLSTFYSFTFVPSIM 406
Y+++ E+ + + + E L PELC + P SL + + +P I+
Sbjct: 1205 TPRYVNRKGVALPTSSEETKRAKRENLEQKQILVPELCTVHPFPASL--WRTAVCLPCIL 1262
Query: 407 HRL 409
+R+
Sbjct: 1263 YRI 1265
Score = 56 (24.8 bits), Expect = 2.8e-50, Sum P(6) = 2.8e-50
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 2 FDPSHTVCSFIQSRGRARMQNSDYLLMLKRYFK-PT 36
+DP T S++Q +GRAR + +++++ +K PT
Sbjct: 587 WDPPTTYRSYVQCKGRARAAPAYHVILVAPSYKSPT 622
Score = 50 (22.7 bits), Expect = 7.6e-49, Sum P(6) = 7.6e-49
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 319 FT-RNDGGAITYKKHYEERYGIQLCFDQELLLNGRRIFHAQNYLS--KCRQEKQREPSKI 375
FT +N+ I + E+R QL Q N R+ +N L + E Q+EP+ I
Sbjct: 1507 FTSKNEAETIETAQEVEKRQK-QLSIIQATNANERQYQQTKNLLIGFNFKHEDQKEPATI 1565
Query: 376 SFE 378
+E
Sbjct: 1566 RYE 1568
Score = 37 (18.1 bits), Expect = 5.0e-30, Sum P(3) = 5.0e-30
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 429 NVTIPTSKVLEAITTKKC 446
NV I TS + E I KC
Sbjct: 564 NVLIGTSVLEEGIDVPKC 581
>UNIPROTKB|F1MCQ5 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00715122 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:DAAA02053090
Ensembl:ENSBTAT00000017080 ArrayExpress:F1MCQ5 Uniprot:F1MCQ5
Length = 1920
Score = 385 (140.6 bits), Expect = 4.3e-48, Sum P(5) = 4.3e-48
Identities = 97/254 (38%), Positives = 140/254 (55%)
Query: 609 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTL 668
+ E +NY F++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 1666 NFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1725
Query: 669 SPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYK----WINITVDSFERLSLES 724
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ ++ ++ E ++S
Sbjct: 1726 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDS 1785
Query: 725 TFGW-------ESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETM 777
E + PKA+GDI ESL+GAI++DSG + E V++ P++ P+I +
Sbjct: 1786 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSA 1845
Query: 778 RLQPARELNEYCQKHHFSMKKTVAPRI-NGKAAVTVEVHANGTLFKHTHADADKETAKKV 836
+ P + E + + K + A R +GK VTVEV G FK AK
Sbjct: 1846 NV-PRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKGV--GRSYRIAKSA 1901
Query: 837 ASKEVLKSLKASFP 850
A++ L+SLKA+ P
Sbjct: 1902 AARRALRSLKANQP 1915
Score = 148 (57.2 bits), Expect = 4.3e-48, Sum P(5) = 4.3e-48
Identities = 35/88 (39%), Positives = 50/88 (56%)
Query: 437 VLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAAL 496
+L+A+T +GF+LE LE LGDSFLK+A + + HEG LS + + +SN L
Sbjct: 1297 ILQALTLSNASDGFNLERLEMLGDSFLKHAITT--ISSALILHEGRLSYMRSKKVSNCNL 1354
Query: 497 CKLGCDHKLPGFIRTEPFDPKM-WMIPG 523
+LG LP + FDP + W+ PG
Sbjct: 1355 YRLGKKKGLPSRMVVSIFDPPVNWLPPG 1382
Score = 97 (39.2 bits), Expect = 4.3e-48, Sum P(5) = 4.3e-48
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 49 TLYLPNNCPIQTVIA---QGNIKTLKQTACLEACKKLHQIGALTDNLLP---DVVVEEHD 102
TLYLP N P++ I I+ ++ L C+KLH+IG L D+L+P + V E +
Sbjct: 665 TLYLPINSPLRASIVGPPMSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEE 724
Query: 103 AQKHGNE 109
H E
Sbjct: 725 LDLHDEE 731
Score = 90 (36.7 bits), Expect = 2.5e-16, Sum P(5) = 2.5e-16
Identities = 31/101 (30%), Positives = 47/101 (46%)
Query: 550 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV---------DFVNVPYERQFQVQ 600
+ K++AD VEAL+G +L++ GE +FL +G+KV + P F Q
Sbjct: 1552 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKAMCPTRENFTSQ 1611
Query: 601 AERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRC 641
+ L R S Y S+L + L +G +P PRC
Sbjct: 1612 QKNLSGSRAAASGAGYR---ASVLKD-LEYGCLKIP--PRC 1646
Score = 79 (32.9 bits), Expect = 9.9e-05, Sum P(4) = 9.9e-05
Identities = 26/132 (19%), Positives = 59/132 (44%)
Query: 453 ESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTE 512
+ LE LGD+ L Y ++ L++ + H G+L+ + +++N L + + +
Sbjct: 1700 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKA- 1758
Query: 513 PFDPKMWMIPGDN-SGSYELND-HSLFNERKIYVTGRKKVKS----KTVADVVEALIGAF 566
P+++ + D E N+ + +E + +K + K + D+ E+L GA
Sbjct: 1759 -VSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1817
Query: 567 LSTGGENVGLIF 578
G ++ ++
Sbjct: 1818 YMDSGMSLETVW 1829
Score = 54 (24.1 bits), Expect = 4.3e-48, Sum P(5) = 4.3e-48
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 2 FDPSHTVCSFIQSRGRARMQNSDYLLM 28
FD S++QS+GRAR S+Y+++
Sbjct: 537 FDLPTEYRSYVQSKGRARAPISNYVML 563
Score = 53 (23.7 bits), Expect = 4.3e-48, Sum P(5) = 4.3e-48
Identities = 33/127 (25%), Positives = 52/127 (40%)
Query: 298 PHSGQIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLC-FDQELL----LNGR 352
PH +Y+ V L S F + T+ ++Y+ +Y + L +Q LL + R
Sbjct: 941 PHR---FYVADVYTDLTPLSKFPSPEYE--TFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 995
Query: 353 RIFHAQNYLS---KCRQEKQREPSKISFE-------LPPELCRIIMGPMSLSTFYSFTFV 402
+L+ K E K +E L PELC I P+ S + +
Sbjct: 996 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAI--HPIPASLWRKAVCL 1053
Query: 403 PSIMHRL 409
PSI++RL
Sbjct: 1054 PSILYRL 1060
Score = 46 (21.3 bits), Expect = 9.8e-42, Sum P(4) = 9.8e-42
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 196 DKVLLCRRFQIALFRVIMDHN 216
D + R++Q+ L +DHN
Sbjct: 39 DNIYTPRKYQVELLEAALDHN 59
>UNIPROTKB|Q6TUI4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0016442 "RNA-induced
silencing complex" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HSSP:P66666 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AY386968 IPI:IPI00715122
RefSeq:NP_976235.1 UniGene:Bt.45343 UniGene:Bt.89150
ProteinModelPortal:Q6TUI4 SMR:Q6TUI4 STRING:Q6TUI4 PRIDE:Q6TUI4
GeneID:337871 KEGG:bta:337871 CTD:23405 HOGENOM:HOG000001567
NextBio:20812451 Uniprot:Q6TUI4
Length = 1923
Score = 382 (139.5 bits), Expect = 3.1e-47, Sum P(5) = 3.1e-47
Identities = 97/254 (38%), Positives = 139/254 (54%)
Query: 609 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTL 668
+ E +NY F++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 1669 NFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1728
Query: 669 SPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYK----WINITVDSFERLSLES 724
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ ++ ++ E ++S
Sbjct: 1729 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDS 1788
Query: 725 TFGW-------ESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETM 777
E + PKA+GDI ESL+GAI++DSG + E V++ P++ P+I +
Sbjct: 1789 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSA 1848
Query: 778 RLQPARELNEYCQKHHFSMKKTVAPRI-NGKAAVTVEVHANGTLFKHTHADADKETAKKV 836
+ P + E + K + A R +GK VTVEV G FK AK
Sbjct: 1849 NV-PRSPVRELLEMEPEITKFSPAERTYDGKVRVTVEVVGKGK-FKGV--GRSYRIAKSA 1904
Query: 837 ASKEVLKSLKASFP 850
A++ L+SLKA+ P
Sbjct: 1905 AARRALRSLKANQP 1918
Score = 143 (55.4 bits), Expect = 3.1e-47, Sum P(5) = 3.1e-47
Identities = 34/87 (39%), Positives = 49/87 (56%)
Query: 437 VLEAITTKKCQEGFHLESLETLGDSFLKYAASQ-QLFKTYQNHHEGLLSVKKDRIISNAA 495
+L+A+T +GF+LE LE LGDSFLK+A + L + HEG LS + + +SN
Sbjct: 1297 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTVSLSALILDAHEGRLSYMRSKKVSNCN 1356
Query: 496 LCKLGCDHKLPGFIRTEPFDPKMWMIP 522
L +LG LP + FDP + +P
Sbjct: 1357 LYRLGKKKGLPSRMVVSIFDPPVNGLP 1383
Score = 97 (39.2 bits), Expect = 3.1e-47, Sum P(5) = 3.1e-47
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 49 TLYLPNNCPIQTVIA---QGNIKTLKQTACLEACKKLHQIGALTDNLLP---DVVVEEHD 102
TLYLP N P++ I I+ ++ L C+KLH+IG L D+L+P + V E +
Sbjct: 665 TLYLPINSPLRASIVGPPMSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEE 724
Query: 103 AQKHGNE 109
H E
Sbjct: 725 LDLHDEE 731
Score = 93 (37.8 bits), Expect = 4.2e-16, Sum P(5) = 4.2e-16
Identities = 36/119 (30%), Positives = 55/119 (46%)
Query: 550 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV---------DFVNVPYERQFQVQ 600
+ K++AD VEAL+G +L++ GE +FL +G+KV + P F Q
Sbjct: 1555 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKAMCPTRENFTSQ 1614
Query: 601 AERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRC-YQRLEFLGDAVLDYLIT 658
+ L R S Y S+L + L +G +P PRC + E D L +LI+
Sbjct: 1615 QKNLSGSRAAASGAGYR---ASVLKD-LEYGCLKIP--PRCMFDHPE--ADRTLRHLIS 1665
Score = 79 (32.9 bits), Expect = 9.9e-05, Sum P(4) = 9.9e-05
Identities = 26/132 (19%), Positives = 59/132 (44%)
Query: 453 ESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTE 512
+ LE LGD+ L Y ++ L++ + H G+L+ + +++N L + + +
Sbjct: 1703 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKA- 1761
Query: 513 PFDPKMWMIPGDN-SGSYELND-HSLFNERKIYVTGRKKVKS----KTVADVVEALIGAF 566
P+++ + D E N+ + +E + +K + K + D+ E+L GA
Sbjct: 1762 -VSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1820
Query: 567 LSTGGENVGLIF 578
G ++ ++
Sbjct: 1821 YMDSGMSLETVW 1832
Score = 54 (24.1 bits), Expect = 3.1e-47, Sum P(5) = 3.1e-47
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 2 FDPSHTVCSFIQSRGRARMQNSDYLLM 28
FD S++QS+GRAR S+Y+++
Sbjct: 537 FDLPTEYRSYVQSKGRARAPISNYVML 563
Score = 53 (23.7 bits), Expect = 3.1e-47, Sum P(5) = 3.1e-47
Identities = 33/127 (25%), Positives = 52/127 (40%)
Query: 298 PHSGQIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLC-FDQELL----LNGR 352
PH +Y+ V L S F + T+ ++Y+ +Y + L +Q LL + R
Sbjct: 941 PHR---FYVADVYTDLTPLSKFPSPEYE--TFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 995
Query: 353 RIFHAQNYLS---KCRQEKQREPSKISFE-------LPPELCRIIMGPMSLSTFYSFTFV 402
+L+ K E K +E L PELC I P+ S + +
Sbjct: 996 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAI--HPIPASLWRKAVCL 1053
Query: 403 PSIMHRL 409
PSI++RL
Sbjct: 1054 PSILYRL 1060
Score = 46 (21.3 bits), Expect = 7.0e-41, Sum P(4) = 7.0e-41
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 196 DKVLLCRRFQIALFRVIMDHN 216
D + R++Q+ L +DHN
Sbjct: 39 DNIYTPRKYQVELLEAALDHN 59
>WB|WBGene00000939 [details] [associations]
symbol:dcr-1 species:6239 "Caenorhabditis elegans"
[GO:0004525 "ribonuclease III activity" evidence=IEA;IMP;IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016891
"endoribonuclease activity, producing 5'-phosphomonoesters"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0040010 "positive regulation
of growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006952 "defense response" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0010467 "gene expression"
evidence=IMP] [GO:0007126 "meiosis" evidence=IMP] [GO:0045132
"meiotic chromosome segregation" evidence=IMP] [GO:0005829
"cytosol" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IMP] [GO:0040034 "regulation of development,
heterochronic" evidence=IMP] [GO:0031050 "dsRNA fragmentation"
evidence=IDA] [GO:0035262 "gonad morphogenesis" evidence=IMP]
[GO:0004530 "deoxyribonuclease I activity" evidence=IDA]
[GO:0000737 "DNA catabolic process, endonucleolytic" evidence=IDA]
[GO:0006401 "RNA catabolic process" evidence=IDA] [GO:0006309
"apoptotic DNA fragmentation" evidence=IGI] [GO:0031054 "pre-miRNA
processing" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005829 GO:GO:0005524 GO:GO:0002009
GO:GO:0018991 GO:GO:0040010 GO:GO:0006952 GO:GO:0002119
GO:GO:0046872 GO:GO:0040011 GO:GO:0006401 GO:GO:0040035
GO:GO:0003725 GO:GO:0045132 SUPFAM:SSF101690 GO:GO:0031054
GO:GO:0030422 GO:GO:0040034 GO:GO:0006309 GO:GO:0016075
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:FO081380
GO:GO:0008026 GO:GO:0035262 eggNOG:COG1111 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 PIR:S44849 RefSeq:NP_498761.2
DIP:DIP-25340N IntAct:P34529 MINT:MINT-1040079 STRING:P34529
PaxDb:P34529 EnsemblMetazoa:K12H4.8 GeneID:176138
KEGG:cel:CELE_K12H4.8 UCSC:K12H4.8 CTD:42693 WormBase:K12H4.8
GeneTree:ENSGT00510000046789 HOGENOM:HOG000022395 InParanoid:P34529
NextBio:891290 GO:GO:0004530 Uniprot:P34529
Length = 1910
Score = 338 (124.0 bits), Expect = 6.8e-46, Sum P(5) = 6.8e-46
Identities = 93/254 (36%), Positives = 129/254 (50%)
Query: 610 LESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLS 669
LE + Y F++ + LV+A TH SY+ + CYQRLEFLGDAVLDY+IT YL+ S
Sbjct: 1646 LEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDSRQYS 1705
Query: 670 PGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTF--- 726
PG LTD+RSA VNN +A +VK KH + LY I V + ++ F
Sbjct: 1706 PGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKFVKLCSERNFDTNFNAE 1765
Query: 727 ------------GWESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITP 774
G E + PKA+GDI ES++GAI++DSG N + ++ I ++ I
Sbjct: 1766 MYMVTTEEEIDEGQEEDIEVPKAMGDIFESVAGAIYLDSGRNLDTTWQVIFHMMRGTI-- 1823
Query: 775 ETMRLQPARE-LNEYCQKHHFSMKKTVAPRI--NGKAAVTVEVHANGTLFKHTHADADKE 831
E P R + E + ++ + RI +GK VTVEV N + T +
Sbjct: 1824 ELCCANPPRSPIRELMEFEQSKVRFSKMERILESGKVRVTVEVVNN---MRFTGMGRNYR 1880
Query: 832 TAKKVASKEVLKSL 845
AK A+K LK L
Sbjct: 1881 IAKATAAKRALKYL 1894
Score = 157 (60.3 bits), Expect = 6.8e-46, Sum P(5) = 6.8e-46
Identities = 34/87 (39%), Positives = 48/87 (55%)
Query: 437 VLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAAL 496
+L A+TT +G LE ET+GDSFLK+A + L+ T + HEG LS + + +SN L
Sbjct: 1397 LLTALTTSNAADGMSLERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVSNCNL 1456
Query: 497 CKLGCDHKLPGFIRTEPFDPK-MWMIP 522
+LG +P I FD W+ P
Sbjct: 1457 YRLGKKLGIPQLIVANKFDAHDSWLPP 1483
Score = 93 (37.8 bits), Expect = 6.8e-46, Sum P(5) = 6.8e-46
Identities = 23/49 (46%), Positives = 27/49 (55%)
Query: 50 LYLPNNCPIQTVIA----QGNIKTLKQTACLEACKKLHQIGALTDNLLP 94
L LP N PI+ I N KT + LEAC++LH G L DNLLP
Sbjct: 611 LLLPINSPIKHAIVLKNPMPNKKTAQMAVALEACRQLHLEGELDDNLLP 659
Score = 77 (32.2 bits), Expect = 6.8e-46, Sum P(5) = 6.8e-46
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 547 RKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 586
++ + K++AD VEALIG L T G N L ++ +G+KV
Sbjct: 1565 QQHISDKSIADAVEALIGVHLLTLGPNPTLKVMNWMGLKV 1604
Score = 55 (24.4 bits), Expect = 6.8e-46, Sum P(5) = 6.8e-46
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 2 FDPSHTVCSFIQSRGRARMQNSDYLLMLK 30
FD + S++QS+GRAR S Y++ ++
Sbjct: 478 FDRPLDMRSYVQSKGRARRAGSRYVITVE 506
>RGD|1309381 [details] [associations]
symbol:Dicer1 "dicer 1, ribonuclease type III" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001525 "angiogenesis" evidence=ISO] [GO:0001932 "regulation of
protein phosphorylation" evidence=ISO] [GO:0001942 "hair follicle
development" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0004525 "ribonuclease III activity" evidence=ISO]
[GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment"
evidence=IDA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0006915 "apoptotic process" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008283 "cell proliferation"
evidence=ISO] [GO:0009791 "post-embryonic development"
evidence=ISO] [GO:0010070 "zygote asymmetric cell division"
evidence=ISO] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISO] [GO:0010628 "positive regulation of
gene expression" evidence=ISO] [GO:0014040 "positive regulation of
Schwann cell differentiation" evidence=ISO] [GO:0016442
"RNA-induced silencing complex" evidence=ISO] [GO:0019827 "stem
cell maintenance" evidence=ISO] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=ISO] [GO:0021675 "nerve
development" evidence=ISO] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=ISO] [GO:0021987 "cerebral cortex
development" evidence=ISO] [GO:0030324 "lung development"
evidence=ISO] [GO:0030326 "embryonic limb morphogenesis"
evidence=ISO] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISO] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0030424
"axon" evidence=IDA] [GO:0030425 "dendrite" evidence=IDA]
[GO:0030426 "growth cone" evidence=IDA] [GO:0031054 "pre-miRNA
processing" evidence=ISO] [GO:0031069 "hair follicle morphogenesis"
evidence=ISO] [GO:0031641 "regulation of myelination" evidence=ISO]
[GO:0031643 "positive regulation of myelination" evidence=ISO]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISO] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0035198 "miRNA binding"
evidence=ISO] [GO:0035264 "multicellular organism growth"
evidence=ISO] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=ISO] [GO:0042981 "regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0045069 "regulation of
viral genome replication" evidence=ISO] [GO:0045595 "regulation of
cell differentiation" evidence=ISO] [GO:0045664 "regulation of
neuron differentiation" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048536 "spleen development" evidence=ISO]
[GO:0048565 "digestive tract development" evidence=ISO] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=ISO]
[GO:0048730 "epidermis morphogenesis" evidence=ISO] [GO:0048754
"branching morphogenesis of an epithelial tube" evidence=ISO]
[GO:0048812 "neuron projection morphogenesis" evidence=ISO]
[GO:0050767 "regulation of neurogenesis" evidence=ISO] [GO:0051225
"spindle assembly" evidence=ISO] [GO:0051607 "defense response to
virus" evidence=ISO] [GO:0051726 "regulation of cell cycle"
evidence=ISO] [GO:0055013 "cardiac muscle cell development"
evidence=ISO] [GO:0060119 "inner ear receptor cell development"
evidence=ISO] [GO:0060253 "negative regulation of glial cell
proliferation" evidence=ISO] [GO:0060576 "intestinal epithelial
cell development" evidence=ISO] [GO:0070173 "regulation of enamel
mineralization" evidence=ISO] [GO:0071335 "hair follicle cell
proliferation" evidence=ISO] [GO:2000630 "positive regulation of
miRNA metabolic process" evidence=ISO] InterPro:IPR000999
InterPro:IPR001159 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
RGD:1309381 GO:GO:0030424 GO:GO:0030425 Gene3D:3.30.160.20
GO:GO:0030426 GO:GO:0003725 GO:GO:0005793 GO:GO:0010626
eggNOG:COG1111 GO:GO:0004525 GO:GO:0035196 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W
GO:GO:0031643 GO:GO:0014040 HOVERGEN:HBG092134 IPI:IPI00365891
EMBL:BC098796 UniGene:Rn.205881 STRING:Q4G034 PhosphoSite:Q4G034
UCSC:RGD:1309381 InParanoid:Q4G034 Genevestigator:Q4G034
Uniprot:Q4G034
Length = 401
Score = 385 (140.6 bits), Expect = 3.6e-41, Sum P(2) = 3.6e-41
Identities = 97/254 (38%), Positives = 141/254 (55%)
Query: 609 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTL 668
+ E +NY F++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 147 NFEKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 206
Query: 669 SPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYK----WINITVDSFERLSLES 724
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ ++ ++ E ++S
Sbjct: 207 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDS 266
Query: 725 TFGW-------ESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETM 777
E + PKA+GDI ESL+GAI++DSG + EVV++ P++ P+I +
Sbjct: 267 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSA 326
Query: 778 RLQPARELNEYCQKHHFSMKKTVAPRI-NGKAAVTVEVHANGTLFKHTHADADKETAKKV 836
+ P + E + + K + A R +GK VTVE+ G FK AK
Sbjct: 327 NV-PRSPVRELLEMEPETAKFSPAERTYDGKVRVTVELVGKGK-FKGV--GRSYRIAKSA 382
Query: 837 ASKEVLKSLKASFP 850
A++ L+SLKA+ P
Sbjct: 383 AARRALRSLKANQP 396
Score = 87 (35.7 bits), Expect = 3.6e-41, Sum P(2) = 3.6e-41
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 550 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 586
+ K++AD VEAL+G +L++ GE +FL +G+KV
Sbjct: 35 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 71
>FB|FBgn0034246 [details] [associations]
symbol:Dcr-2 "Dicer-2" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS;NAS] [GO:0003725
"double-stranded RNA binding" evidence=IEA;ISS;NAS] [GO:0016246
"RNA interference" evidence=IMP;NAS;IDA;TAS] [GO:0030422
"production of siRNA involved in RNA interference"
evidence=IMP;IDA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0035087 "siRNA
loading onto RISC involved in RNA interference" evidence=IMP]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006342 "chromatin
silencing" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0033227 "dsRNA transport" evidence=IMP]
[GO:0006379 "mRNA cleavage" evidence=IMP] [GO:0009597 "detection of
virus" evidence=IMP] [GO:0016442 "RNA-induced silencing complex"
evidence=IDA] [GO:0070868 "heterochromatin organization involved in
chromatin silencing" evidence=IMP] [GO:0007626 "locomotory
behavior" evidence=IMP] [GO:0035197 "siRNA binding" evidence=IDA]
[GO:0031054 "pre-miRNA processing" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270
Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
EMBL:AE013599 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0007626 GO:GO:0016887 GO:GO:0051607 GO:GO:0003725
GO:GO:0004386 GO:GO:0035197 GO:GO:0016442 GO:GO:0033227
GO:GO:0070868 GO:GO:0030422 GO:GO:0035087 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0006379 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 GO:GO:0009597
EMBL:BT128787 RefSeq:NP_523778.2 UniGene:Dm.7764 SMR:A1ZAW0
DIP:DIP-54444N IntAct:A1ZAW0 STRING:A1ZAW0
EnsemblMetazoa:FBtr0086904 GeneID:36993 KEGG:dme:Dmel_CG6493
UCSC:CG6493-RA CTD:36993 FlyBase:FBgn0034246 InParanoid:A1ZAW0
OrthoDB:EOG4DJHB9 GenomeRNAi:36993 NextBio:801402 Uniprot:A1ZAW0
Length = 1722
Score = 241 (89.9 bits), Expect = 7.0e-37, Sum P(6) = 7.0e-37
Identities = 64/190 (33%), Positives = 98/190 (51%)
Query: 537 FNERKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGI-KVDF------- 588
F+ + G + +K +AD +EAL+G + G L+ I + D
Sbjct: 1348 FSSEVNFCVGLVTIPNKVIADTLEALLGVIVKNYGLQHAFKMLEYFKICRADIDKPLTQL 1407
Query: 589 VNVPY---ERQFQVQAER----LVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRC 641
+N+ + + V L+N +LE L Y+F+D L++ALTH SY I
Sbjct: 1408 LNLELGGKKMRANVNTTEIDGFLINHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGS 1467
Query: 642 YQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILH 701
YQ LEF+GDA+LD+LI+ Y++ ++PG LTD+RSA VNN A V+H LH IL
Sbjct: 1468 YQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILA 1527
Query: 702 ASQELYKWIN 711
+ +L + I+
Sbjct: 1528 ENAKLSEIIS 1537
Score = 140 (54.3 bits), Expect = 7.0e-37, Sum P(6) = 7.0e-37
Identities = 33/87 (37%), Positives = 47/87 (54%)
Query: 438 LEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALC 497
L AIT + F +E LE LGDSFLK +A+ L Y + +EG L+ K +++SN L
Sbjct: 1195 LAAITASSAADVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1254
Query: 498 KLGCDHKLPGFIRTEPFDPKM-WMIPG 523
D +P + T F P+ W+ PG
Sbjct: 1255 FCLIDADIPKTLNTIQFTPRYTWLPPG 1281
Score = 96 (38.9 bits), Expect = 7.0e-37, Sum P(6) = 7.0e-37
Identities = 31/122 (25%), Positives = 57/122 (46%)
Query: 726 FGWESETSFPKALGDIIESLSGAIFVDSGCNK-EVVFESIRPLLEPMITPETMRLQPARE 784
F + PKALGD++E+L A+++D C + +E I L EP + T ++ P
Sbjct: 1600 FNMSTNVDVPKALGDVLEALIAAVYLD--CRDLQRTWEVIFNLFEPELQEFTRKV-PINH 1656
Query: 785 LNEYCQKHHFSMKKTVAPRINGKAA-VTVEVHANGTLFKHTHADADKETAKKVASKEVLK 843
+ + + H + +P + G+ V+ + K ++K+ AK A+K L+
Sbjct: 1657 IRQLVEHKH-AKPVFSSPIVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHALQ 1715
Query: 844 SL 845
L
Sbjct: 1716 QL 1717
Score = 86 (35.3 bits), Expect = 1.4e-10, Sum P(5) = 1.4e-10
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 643 QRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNN 683
+RLE LGD+ L T+YL +KY + G LT+++S V+N
Sbjct: 1210 ERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSN 1250
Score = 85 (35.0 bits), Expect = 7.0e-37, Sum P(6) = 7.0e-37
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 47 ICTLYLPNNCPIQTVI---AQGNIKTLKQTACLEACKKLHQIGALTDNLLPDVVVE 99
+ ++ +P NC ++ I N+KT K +A +ACK L+ +G L + +P + E
Sbjct: 615 VISINMPVNCMLRDTIYSDPMDNVKTAKISAAFKACKVLYSLGELNERFVPKTLKE 670
Score = 71 (30.1 bits), Expect = 3.8e-09, Sum P(5) = 3.8e-09
Identities = 16/60 (26%), Positives = 30/60 (50%)
Query: 453 ESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTE 512
+ LE +GD+ L + S +F+ + G L+ + +++N L + H+L FI E
Sbjct: 1469 QELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAE 1528
Score = 63 (27.2 bits), Expect = 7.0e-37, Sum P(6) = 7.0e-37
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 338 GIQLCFDQELLLNGRRIFHAQNYLSKCRQ-EKQREPSKISFE 378
G Q CFD EL+ N RR+ Q++ S +Q E+Q P FE
Sbjct: 839 GEQKCFDWELMTNFRRL--PQSHGSNVQQREQQPAPRPEDFE 878
Score = 54 (24.1 bits), Expect = 7.0e-37, Sum P(6) = 7.0e-37
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 1 MFDPSHTVCSFIQSRGRARMQNSDYLL 27
+ DP T ++QS+GRAR + ++L
Sbjct: 478 ILDPVKTFNMYVQSKGRARTTEAKFVL 504
Score = 38 (18.4 bits), Expect = 2.1e-10, Sum P(5) = 2.1e-10
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 553 KTVADVVEALIGA 565
K + DV+EALI A
Sbjct: 1610 KALGDVLEALIAA 1622
>POMBASE|SPCC188.13c [details] [associations]
symbol:dcr1 "dicer" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005720 "nuclear heterochromatin"
evidence=IC] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006396 "RNA processing" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0031048 "chromatin silencing by small RNA"
evidence=TAS] [GO:0034613 "cellular protein localization"
evidence=IMP] [GO:0035389 "establishment of chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051570 "regulation of histone H3-K9
methylation" evidence=IMP] [GO:0051983 "regulation of chromosome
segregation" evidence=IMP] [GO:0090052 "regulation of chromatin
silencing at centromere" evidence=IMP] InterPro:IPR000999
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR006935
Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 Pfam:PF04851 PROSITE:PS00517
PROSITE:PS50142 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490
SMART:SM00535 PomBase:SPCC188.13c GO:GO:0005829 GO:GO:0005524
GO:GO:0007059 GO:GO:0034613 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 GO:GO:0003723
GO:GO:0007049 GO:GO:0004386 GO:GO:0031048 GO:GO:0090052
GO:GO:0051570 GO:GO:0030422 GO:GO:0004540 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0051983 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PIR:T39130 RefSeq:NP_588215.2 PDB:2L6M PDBsum:2L6M
ProteinModelPortal:Q09884 STRING:Q09884 EnsemblFungi:SPCC188.13c.1
GeneID:2538930 KEGG:spo:SPCC188.13c OMA:RMCLICN OrthoDB:EOG4PRWZS
NextBio:20800107 GO:GO:0035389 Uniprot:Q09884
Length = 1374
Score = 381 (139.2 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 117/392 (29%), Positives = 194/392 (49%)
Query: 390 PMSLSTFYSFTFVPSIMHRLQSXXXXXXXXXXXXDHCMQNVTIPTSKVLEAITTKKCQEG 449
P+S S +PSI++ +++ +H + I T+ +A+T+ + Q
Sbjct: 873 PVSRHLKNSALLIPSILYHIENLLVASSFI----EHFRLDCKIDTA--CQALTSAESQLN 926
Query: 450 FHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFI 509
F + LE GD FLK AS +F + + E L + +IISN L K+ D +LP +
Sbjct: 927 FDYDRLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYKVAIDCELPKYA 986
Query: 510 RTEPFDPKMWMIPGDNSGSYELNDHSLFNERKIYVTGRKKVKSKTVADVVEALIGAFLST 569
+ P + + W G + + +++ +K+ K +AD+VEA IGA L
Sbjct: 987 LSTPLEIRHWCPYGFQKSTSDKCRYAVL----------QKLSVKRIADMVEASIGACLLD 1036
Query: 570 GGENVGLIFLDRIGIKV-DFVNVP-YERQFQVQ--AERLVNVR-----HLESLLNYSFRD 620
G + L + + + D N + F + A+ L NV+ ++E + YSF++
Sbjct: 1037 SGLDSALKICKSLSVGLLDISNWDEWNNYFDLNTYADSLRNVQFPYSSYIEETIGYSFKN 1096
Query: 621 PSLLVEALTHGSYMLPE-IPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSA 679
LL A H S M + I YQ+LEFLGDAVLDY+I YLY KYP + G+LTD +S
Sbjct: 1097 KKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKYPNATSGELTDYKSF 1156
Query: 680 SVNNDCYALSSVKHGLHKHILHAS----QELYKWINITVDSFERLSLESTFGWESETSFP 735
V N + LHK+I H S ++++ + +++F + E+ + W E P
Sbjct: 1157 YVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQEL-IEAFRETASENPWFW-FEIDSP 1214
Query: 736 KALGDIIESLSGAIFVDSGCNKEVVFESIRPL 767
K + D +E++ AIF+DSG + + + + + PL
Sbjct: 1215 KFISDTLEAMICAIFLDSGFSLQSL-QFVLPL 1245
Score = 64 (27.6 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 2 FDPSHTVCSFIQSRGRARMQNSDYLLML 29
F+ TV ++QSRGRAR S +L+ L
Sbjct: 448 FNICRTVTQYVQSRGRARAMASKFLIFL 475
Score = 37 (18.1 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 330 KKHYEERYGIQLCFDQELLLNGRRIF 355
K+ ++ G QL D+EL ++ +IF
Sbjct: 292 KRLKKKALGKQLSDDEELAIDRLKIF 317
>TAIR|locus:504955425 [details] [associations]
symbol:RTL1 "RNAse II-like 1" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0004525
"ribonuclease III activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] InterPro:IPR000999 Pfam:PF00636 PROSITE:PS50142
SMART:SM00535 EMBL:CP002687 GO:GO:0003723 GO:GO:0006396
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 IPI:IPI00537607
RefSeq:NP_680697.4 UniGene:At.45352 ProteinModelPortal:F4JK37
SMR:F4JK37 PRIDE:F4JK37 EnsemblPlants:AT4G15417.1 GeneID:827212
KEGG:ath:AT4G15417 OMA:HRFLRHK PhylomeDB:F4JK37 Uniprot:F4JK37
Length = 264
Score = 331 (121.6 bits), Expect = 7.3e-29, P = 7.3e-29
Identities = 91/252 (36%), Positives = 137/252 (54%)
Query: 602 ERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYL 661
++L+ + LE +LNY F+D SLL++A T SY+ + Y+ LE LGD++L+ I +Y
Sbjct: 24 DQLMEIESLEKILNYKFKDKSLLLKAFTDASYV-DDKSESYELLELLGDSILNMGI-IYD 81
Query: 662 YNK-YPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERL 720
+ K YP +PG LT +R+ +V+ + A +V H L+ ++ H L + I V++ E+
Sbjct: 82 FIKLYPKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAMEKY 141
Query: 721 SLESTFGWESETSFPKALGDIIESLSGAIFVDSGCNK-EVVFESIRPLLEPMITPETMRL 779
L S G PK L DI+ES GAIF+D CN E V++ I+PLLEP+I + M+
Sbjct: 142 PLHSN-GL---LKVPKVLADIVESTIGAIFMD--CNSTETVWKVIKPLLEPIIHLDKMKS 195
Query: 780 QPARELNEYCQKHHFSMKKTVAPRINGKAAVTVEVHANGTLFKHTHADADKETAKKVASK 839
P ELNE CQK + +K T + + T H H KETA+ A+K
Sbjct: 196 HPMTELNEMCQKRN--LKLT--SKDTWEENQTYCFHIEDKFVGCGHHPVKKETARNFAAK 251
Query: 840 EVLKSLKASFPG 851
+ + A F G
Sbjct: 252 NAIDNF-AKFFG 262
>ASPGD|ASPL0000041548 [details] [associations]
symbol:dclB species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001650
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50142
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535
GO:GO:0005524 GO:GO:0046872 EMBL:BN001306 GO:GO:0051607
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AACD01000052
ProteinModelPortal:P0C5H7 HOGENOM:HOG000048683 OrthoDB:EOG4JWZNK
Uniprot:P0C5H7
Length = 1429
Score = 293 (108.2 bits), Expect = 8.7e-27, Sum P(4) = 8.7e-27
Identities = 108/374 (28%), Positives = 165/374 (44%)
Query: 336 RYGIQLCFDQELLLNGRRIFHAQNYLSKCRQEKQRE------PSKISFELPPELCRIIMG 389
RYG L F + L +G Y SK R QR+ P++ P RI+
Sbjct: 783 RYGELLIFKRWLNRSGDLELECDPYPSKRRNLLQRQTLAKKRPAEDEILGSPTKKRILSA 842
Query: 390 --------PMSLSTFYSFTFVPSIMHRLQSXXXXXXXXXXXXDHCMQNVTIPTSK-VLEA 440
P S + F F +P I+ RL++ + ++++ + V+ A
Sbjct: 843 SHCTIDRLPASETVFGRF--IPVILDRLEAALVATRLC----ETVLRDIQFQDLRHVITA 896
Query: 441 ITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLG 500
IT Q + E GDS LK+ + LF N HEG L+ ++ NA L +
Sbjct: 897 ITMPLAQAPTDYQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTETLHALVQNARLTRAA 956
Query: 501 CDHKLPGFIRTEPFDPKMWMIPGDNSGSYELNDHSLFNERKIYVTGR-KKVKSKTVADVV 559
D L +I + F P+ W P L +E K+Y + + + +K +ADVV
Sbjct: 957 LDQGLDAYIISNRFTPRKWSAP-------------LISE-KLYASASTRSMSAKVLADVV 1002
Query: 560 EALIGAFLSTGGENVGLIFLDRI--GIKVDFVNVPYERQFQVQAER----LVNVRHLESL 613
EALIGA GG + + R I++ +P + + L+ +LE+
Sbjct: 1003 EALIGAAYIDGGLHKAQSCIVRFLPEIELPETKLPRPESMPMSKDHKKPHLIQQENLENH 1062
Query: 614 LNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDL 673
+ Y+F+D +LL+EALTH S + YQRLEFLGDAVLD LI + + G++
Sbjct: 1063 IGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAHHVECQQGEM 1122
Query: 674 TDMRSASVNNDCYA 687
T ++ A VN A
Sbjct: 1123 TKIKHAIVNGHLLA 1136
Score = 153 (58.9 bits), Expect = 1.1e-09, Sum P(3) = 1.1e-09
Identities = 54/203 (26%), Positives = 94/203 (46%)
Query: 604 LVNVRHLESLL-NYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLY 662
LV R E++L + F+D ++ A+T L + P YQR EF GD+VL + + L+
Sbjct: 872 LVATRLCETVLRDIQFQDLRHVITAIT---MPLAQAPTDYQRYEFFGDSVLKFTVAASLF 928
Query: 663 NKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSL 722
P G LT+ A V N +++ GL +I+ KW + E+L
Sbjct: 929 YNNPNWHEGYLTETLHALVQNARLTRAALDQGLDAYIISNRFTPRKWSAPLIS--EKLYA 986
Query: 723 ESTFGWESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETMRLQP- 781
++ + + K L D++E+L GA ++D G +K I L + PET +P
Sbjct: 987 SAS----TRSMSAKVLADVVEALIGAAYIDGGLHKAQ--SCIVRFLPEIELPETKLPRPE 1040
Query: 782 ARELNEYCQKHHFSMKKTVAPRI 804
+ +++ +K H ++ + I
Sbjct: 1041 SMPMSKDHKKPHLIQQENLENHI 1063
Score = 72 (30.4 bits), Expect = 8.7e-27, Sum P(4) = 8.7e-27
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 10 SFIQSRGRARMQNSDYLLML 29
SFIQ RGRAR QNS Y +ML
Sbjct: 448 SFIQRRGRARRQNSTYSMML 467
Score = 65 (27.9 bits), Expect = 8.7e-27, Sum P(4) = 8.7e-27
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 720 LSLESTFGWE--SETSFPKALGDIIESLSGAIFVDSG 754
L+ + + W S K D++ES+ GAIFVDSG
Sbjct: 1214 LNNTTAYPWSLFSAIHADKFFSDVVESIIGAIFVDSG 1250
Score = 57 (25.1 bits), Expect = 8.7e-27, Sum P(4) = 8.7e-27
Identities = 21/73 (28%), Positives = 34/73 (46%)
Query: 30 KRYFKPTPKFDINKEMG---ICTLYLPNNCPIQTVIAQGNI--KT---LKQTACLEACKK 81
+ Y + P+F + G + LP++ + A+G KT K+ A A K
Sbjct: 542 QNYVEDKPEFSFERNDGGLLRAKVILPSSVNPKVRRAEGKAWWKTERAAKKEAAFYAYKA 601
Query: 82 LHQIGALTDNLLP 94
L++ G + DNLLP
Sbjct: 602 LYEHGLVNDNLLP 614
Score = 37 (18.1 bits), Expect = 9.6e-25, Sum P(4) = 9.6e-25
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 319 FTRNDGGAITYK 330
F RNDGG + K
Sbjct: 553 FERNDGGLLRAK 564
>TAIR|locus:2092409 [details] [associations]
symbol:RTL2 "RNAse THREE-like protein 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS;IMP]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005634 GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0016075
GO:GO:0006364 EMBL:AB024036 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 HSSP:O67082
EMBL:AY042815 EMBL:AY081681 IPI:IPI00517285 RefSeq:NP_566661.1
UniGene:At.8183 ProteinModelPortal:Q9LTQ0 SMR:Q9LTQ0 IntAct:Q9LTQ0
EnsemblPlants:AT3G20420.1 GeneID:821587 KEGG:ath:AT3G20420
TAIR:At3g20420 HOGENOM:HOG000237951 InParanoid:Q9LTQ0 OMA:ANISTEK
PhylomeDB:Q9LTQ0 ProtClustDB:CLSN2688595 Genevestigator:Q9LTQ0
Uniprot:Q9LTQ0
Length = 391
Score = 306 (112.8 bits), Expect = 3.5e-26, P = 3.5e-26
Identities = 81/255 (31%), Positives = 140/255 (54%)
Query: 601 AERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVY 660
+ + ++ +E +LNY F + SLL EA+TH S + P Y+RLEF+GD+ + I+ Y
Sbjct: 54 SSEMESMEAVEKILNYKFSNKSLLKEAITHTS--CTDFPS-YERLEFIGDSAIGLAISNY 110
Query: 661 LYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQEL---YKWINITVDSF 717
LY YP+L P DL+ +R+A+V+ + A S+ HGL+ + + L K + V
Sbjct: 111 LYLTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKE 170
Query: 718 ERLSLESTFGWESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETM 777
+ LS+ ++G PK L D+ ESL+GA++VD + + ++ R LLEP++T + +
Sbjct: 171 DDLSV--SYG--GLVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDL 226
Query: 778 RLQP--ARELNEYCQKHHFSMKKTVAPRINGKAAVTVEVHANGTLFKHTHADADKETAKK 835
+ QP L + C KH + + +G ++ V ++ + L A+ +K+ A+
Sbjct: 227 QKQPQPVSMLFKLCHKH--KKRIDIKNWKDGNVSIAV-IYLDDELLASGRAE-NKDIARL 282
Query: 836 VASKEVLKSLKASFP 850
+A+KE L+ L FP
Sbjct: 283 IAAKEALRKLSEVFP 297
>UNIPROTKB|A4RHU9 [details] [associations]
symbol:DCL2 "Dicer-like protein 2" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS00690 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00490 SMART:SM00535 GO:GO:0005524
GO:GO:0046872 GO:GO:0051607 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 OrthoDB:EOG4JWZNK
RefSeq:XP_003715365.1 GeneID:2683150 KEGG:mgr:MGG_12357
Uniprot:A4RHU9
Length = 1485
Score = 264 (98.0 bits), Expect = 8.0e-23, Sum P(4) = 8.0e-23
Identities = 94/328 (28%), Positives = 148/328 (45%)
Query: 365 RQEKQREPSKISFELPPELCRIIMGPMSLSTFYSFTFVPSIMHRLQSXXXXXXXXXXXXD 424
++ + P + + +P +LC P +L VPSI ++
Sbjct: 940 KEYQTSSPRRFDYIIPEQLCTFDTVPATLVQLGML--VPSITQAMEPYFVAQELLRRTAL 997
Query: 425 HCMQNVTIPTSKVLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLS 484
+ I V+ IT+ + E +E LGD+ LK A+ + EG LS
Sbjct: 998 GSLDFKDIDL--VMMVITSSSAGRLTNYERVEFLGDAVLKLGAAVTCATNNLHFPEGYLS 1055
Query: 485 VKKDRIISNAALCKLGCDHKLPGFIRTEPFDPKMWMIPGDNSGSYELNDHSLFNERKIYV 544
+ KDR++SN+ LCK L FI T + K W ++ +
Sbjct: 1056 LLKDRLVSNSRLCKAATALGLDQFIITRQYSLKQW--------------RNMLTAPEP-P 1100
Query: 545 TGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVPYERQ--FQVQAE 602
T +K+ SKT+ADV EALIGA GG + L + + + ++ R +QV
Sbjct: 1101 TNTRKMSSKTLADVTEALIGAAYIEGGMSKALRCISLMIPNERWRSLDESRAVLYQVALN 1160
Query: 603 RLV---NVRHLESLLNYSFRDPSLLVEALTHGSYMLP-EIPRCYQRLEFLGDAVLDYLIT 658
+ + LE LL YSF SLL+EA+TH SY +P +RLEFLGD+VLD+++
Sbjct: 1161 DIPLPSTLGPLEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVV 1220
Query: 659 VYLYN-KYPT-LSPGDLTDMRSASVNND 684
L++ K P + ++ +R+A VN +
Sbjct: 1221 ARLFSVKDPAPIEHYNMHLLRTAVVNGE 1248
Score = 68 (29.0 bits), Expect = 8.0e-23, Sum P(4) = 8.0e-23
Identities = 22/84 (26%), Positives = 35/84 (41%)
Query: 726 FGWE--SETSFPKALGDIIESLSGAIFVDSG----CNKEVVFESIRPLLEPMITPETMRL 779
+ W+ + K D++E++ GA++VDSG C K + I L+ + L
Sbjct: 1328 YPWDLLARLRISKVHSDVLEAVIGAVWVDSGSLEECEKLIERVGILRYLDRALRDGVKIL 1387
Query: 780 QPARELNEYCQKHHFSMKKTVAPR 803
P EL Q + K A R
Sbjct: 1388 HPKEELGRVAQNNKVVYKVDKAKR 1411
Score = 65 (27.9 bits), Expect = 8.0e-23, Sum P(4) = 8.0e-23
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 2 FDPSHTVCSFIQSRGRARMQNSDYLLMLK 30
FD + SFIQ RGRARM+ S LM++
Sbjct: 522 FDMPANLKSFIQRRGRARMRESKLHLMIE 550
Score = 54 (24.1 bits), Expect = 8.0e-23, Sum P(4) = 8.0e-23
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 68 KTLKQTACLEACKKLHQIGALTDNLLP 94
+ K+ A L+A K L++ G + ++LLP
Sbjct: 678 RNAKKDAALQAYKMLYEAGLINEHLLP 704
Score = 37 (18.1 bits), Expect = 4.3e-21, Sum P(4) = 4.3e-21
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 220 LNEILKGLWLRDNLEIDYLLLPASEQSIDWEPVAS 254
L +K + D E+D+L E +D P+ S
Sbjct: 563 LEAAMKQRYENDMRELDHLAQVEEEDEMDVPPLHS 597
>TAIR|locus:2153333 [details] [associations]
symbol:RTL3 "RNAse THREE-like protein 3" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0006396 GO:GO:0003725 GO:GO:0090305
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 PANTHER:PTHR11207 EMBL:AB012240 HSSP:O67082
IPI:IPI00541445 RefSeq:NP_199328.1 UniGene:At.55380
ProteinModelPortal:Q9FKF0 SMR:Q9FKF0 PaxDb:Q9FKF0 PRIDE:Q9FKF0
EnsemblPlants:AT5G45150.1 GeneID:834551 KEGG:ath:AT5G45150
TAIR:At5g45150 HOGENOM:HOG000152519 InParanoid:Q9FKF0 OMA:PHVEPED
PhylomeDB:Q9FKF0 ProtClustDB:CLSN2916859 Genevestigator:Q9FKF0
Uniprot:Q9FKF0
Length = 957
Score = 262 (97.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 59/176 (33%), Positives = 100/176 (56%)
Query: 606 NVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKY 665
+V +E +LNYSF + +LL EA+T S + + RLEF GD++L+ T Y+ + Y
Sbjct: 3 SVEAVEKILNYSFVNKTLLKEAITQKSPL-------FDRLEFFGDSILEVAFTNYICHTY 55
Query: 666 PTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLEST 725
P L +L D+R+A+V+N+ +A +V H LH +L + L+K + ++ +
Sbjct: 56 PNLKVKELRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKVKNFAEAVRKEDDPVP 115
Query: 726 FGWESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETMRLQP 781
+G PK L D +ES++ +F+D + + ++E R LLEP+ TP+ + LQP
Sbjct: 116 YG--GLVKAPKILADTLESIAATVFIDVNYDVKRLWEIFRSLLEPIYTPDDLLLQP 169
Score = 230 (86.0 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 71/248 (28%), Positives = 123/248 (49%)
Query: 606 NVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKY 665
+V +E +LNYSF + +LL E LTH + L +Q L F+G++ L T +LY Y
Sbjct: 414 SVEAVEKILNYSFVNKTLLKELLTHNNSPL------FQGLMFVGESALSLAFTKHLYLTY 467
Query: 666 PTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLEST 725
P L P DL+ +R A+ +D YA +VK G+++ + + + K +T D E + E
Sbjct: 468 PMLEPKDLSVLRDANTCHDKYACVAVKKGIYQSFIGSVPKPEK---MTTDFIELMGKEDD 524
Query: 726 FGWESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETMRLQ---PA 782
PK L +++ ++GA+++D N + + E R LLEP+ T + +R+Q P
Sbjct: 525 P--YRVVKAPKILVNLLAGVAGAVYIDVKYNVQRLLEIFRVLLEPIYTLDDLRMQLKQPF 582
Query: 783 RELNEYCQKHHFSMKKTVAPRINGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVL 842
L KH + + + G +V+ + +F + +TAK +A++E +
Sbjct: 583 LMLFRLADKHGKQIDFRYS-KDGGSRKNIAQVYMDD-MFIASGCAKRIDTAKLLAAEEAI 640
Query: 843 KSLKASFP 850
+ L P
Sbjct: 641 QKLSECMP 648
Score = 63 (27.2 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
Identities = 21/71 (29%), Positives = 31/71 (43%)
Query: 439 EAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCK 498
EAIT K + LE GDS L+ A + + TY N L + +SN +
Sbjct: 23 EAITQKSPL----FDRLEFFGDSILEVAFTNYICHTYPNLKVKELRDLRTANVSNEKFAR 78
Query: 499 LGCDHKLPGFI 509
+ +H L F+
Sbjct: 79 IAVNHNLHHFL 89
Score = 51 (23.0 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 20/64 (31%), Positives = 29/64 (45%)
Query: 163 LESEIKKVNFDLEVDRGRLTVNLKHLGKIQLTPDKVLLCRRFQ-IALFRVIMDHNLDKLN 221
LES V D+ D RL + L + TPD +LL + + LFR+ H + +
Sbjct: 130 LESIAATVFIDVNYDVKRLWEIFRSLLEPIYTPDDLLLQPKLPFLTLFRLADKHGSESTS 189
Query: 222 EILK 225
I K
Sbjct: 190 GIRK 193
>UNIPROTKB|I3L6Y9 [details] [associations]
symbol:DICER1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005524 GO:GO:0010070 GO:GO:0006915
GO:GO:0021987 GO:GO:0043066 GO:GO:0045664 GO:GO:0051225
GO:GO:0030324 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607
GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791
GO:GO:0048536 GO:GO:0003725 GO:GO:0035264 GO:GO:0035116
GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
OMA:FLEYDQE GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:CU915626
Ensembl:ENSSSCT00000022914 Uniprot:I3L6Y9
Length = 1565
Score = 184 (69.8 bits), Expect = 1.2e-16, Sum P(5) = 1.2e-16
Identities = 39/88 (44%), Positives = 54/88 (61%)
Query: 437 VLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAAL 496
+L+A+T +GF+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 1294 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1353
Query: 497 CKLGCDHKLPGFIRTEPFDPKM-WMIPG 523
+LG LP + FDP + W+ PG
Sbjct: 1354 YRLGKKKGLPSRMVVSIFDPPVNWLPPG 1381
Score = 103 (41.3 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 620 DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSA 679
+P L+++ALT + +RLE LGD+ L + IT YL+ YP G L+ MRS
Sbjct: 1290 NPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1346
Query: 680 SVNN-DCYALSSVKHGL 695
V+N + Y L K GL
Sbjct: 1347 KVSNCNLYRLGK-KKGL 1362
Score = 99 (39.9 bits), Expect = 1.2e-16, Sum P(5) = 1.2e-16
Identities = 32/106 (30%), Positives = 50/106 (47%)
Query: 49 TLYLPNNCPIQTVIA---QGNIKTLKQTACLEACKKLHQIGALTDNLLP---DVVVEEHD 102
TLYLP N P++ I I+ ++ L C+KLH+IG L D+L+P + V E +
Sbjct: 666 TLYLPINSPLRASIVGPPMSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEE 725
Query: 103 AQKHGNE-------PYDAEHPIYFPPELVNQCPQDT--KITYHCYL 139
H E P + +P + + +C +D+ K CYL
Sbjct: 726 LDLHDEEETSVPGRPGSTKRRQCYP-KAIPECLRDSYPKPDQPCYL 770
Score = 54 (24.1 bits), Expect = 1.2e-16, Sum P(5) = 1.2e-16
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 2 FDPSHTVCSFIQSRGRARMQNSDYLLM 28
FD S++QS+GRAR S+Y+++
Sbjct: 537 FDLPTEYRSYVQSKGRARAPISNYVML 563
Score = 53 (23.7 bits), Expect = 1.2e-16, Sum P(5) = 1.2e-16
Identities = 33/127 (25%), Positives = 52/127 (40%)
Query: 298 PHSGQIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLC-FDQELL----LNGR 352
PH +Y+ V L S F + T+ ++Y+ +Y + L +Q LL + R
Sbjct: 942 PHR---FYVADVYTDLTPLSKFPSPEYE--TFAEYYKTKYNLDLTNLNQPLLDVDHTSSR 996
Query: 353 RIFHAQNYLS---KCRQEKQREPSKISFE-------LPPELCRIIMGPMSLSTFYSFTFV 402
+L+ K E K +E L PELC I P+ S + +
Sbjct: 997 LNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAI--HPIPASLWRKAVCL 1054
Query: 403 PSIMHRL 409
PSI++RL
Sbjct: 1055 PSILYRL 1061
Score = 48 (22.0 bits), Expect = 1.2e-16, Sum P(5) = 1.2e-16
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 550 VKSKTVADVVEALIGAF 566
+ K++AD VEAL+G +
Sbjct: 1549 IADKSIADCVEALLGCY 1565
Score = 46 (21.3 bits), Expect = 3.5e-10, Sum P(4) = 3.5e-10
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 196 DKVLLCRRFQIALFRVIMDHN 216
D + R++Q+ L +DHN
Sbjct: 39 DNIYTPRKYQVELLEAALDHN 59
>TIGR_CMR|CHY_1444 [details] [associations]
symbol:CHY_1444 "ribonuclease III" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004525
"ribonuclease III activity" evidence=ISS] [GO:0006396 "RNA
processing" evidence=ISS] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 TIGRFAMs:TIGR02191 HOGENOM:HOG000246808
OMA:LTHKSCK RefSeq:YP_360276.1 ProteinModelPortal:Q3AC58
STRING:Q3AC58 GeneID:3727428 KEGG:chy:CHY_1444 PATRIC:21276019
BioCyc:CHYD246194:GJCN-1443-MONOMER Uniprot:Q3AC58
Length = 235
Score = 164 (62.8 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 37/79 (46%), Positives = 52/79 (65%)
Query: 606 NVRHLESLLNYSFRDPSLLVEALTHGSYML--PEIPRCY-QRLEFLGDAVLDYLITVYLY 662
N+ LE +L ++F +PS+L+ A+TH SY PE + +RLEFLGDAVL+ I+ YL+
Sbjct: 5 NLISLEKILGFNFNNPSILLSAITHPSYAFEHPEEGIEHNERLEFLGDAVLELFISDYLF 64
Query: 663 NKYPTLSPGDLTDMRSASV 681
+P S GDLT +RS V
Sbjct: 65 RTFPQKSEGDLTKLRSRLV 83
Score = 79 (32.9 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
Identities = 42/155 (27%), Positives = 64/155 (41%)
Query: 700 LHASQELYKW-INITVDSFERLSL-ESTFGWESETSFPKALGDIIESLSGAIFVDSGCNK 757
L ++ LY+ I +D F RL E G S L + +E++ GA++ D C
Sbjct: 82 LVCAESLYELAFKINLDKFLRLGKGEFKAGGNQRMS---NLANAVEAVIGAVYFD--CGI 136
Query: 758 EVVFESIRPLLEPMITPETMRLQPARE---LNEYCQKHHFSMKKTVAPRING---KAAVT 811
E F I L + PE + P E L E QK ++ + G + T
Sbjct: 137 EAAFSFITRLYGEKLKPENLEQLPKDEKTTLQELLQKEKNNVLRYEILLEEGPPHQKIFT 196
Query: 812 VEVHANGTLFKHTHADADKETAKKVASKEVLKSLK 846
V N L + KE A++ A+K+ L+ LK
Sbjct: 197 AGVIINDKLIATGRGKSKKE-AEQEAAKKALELLK 230
>TIGR_CMR|CJE_1807 [details] [associations]
symbol:CJE_1807 "ribonuclease III" species:195099
"Campylobacter jejuni RM1221" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 HOGENOM:HOG000246808
OMA:LTHKSCK RefSeq:YP_179777.1 ProteinModelPortal:Q5HSF8
STRING:Q5HSF8 GeneID:3232434 KEGG:cjr:CJE1807 PATRIC:20045436
BioCyc:CJEJ195099:GJC0-1841-MONOMER Uniprot:Q5HSF8
Length = 224
Score = 168 (64.2 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 37/84 (44%), Positives = 54/84 (64%)
Query: 606 NVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY--QRLEFLGDAVLDYLITVYLYN 663
N+ LE L Y F+D +LL+ ALTH S+ + Y +RLEFLGDAVLD ++ YL++
Sbjct: 3 NIEKLERSLTYEFKDKNLLIHALTHKSFK-----KSYNNERLEFLGDAVLDLVVGEYLFH 57
Query: 664 KYPTLSPGDLTDMRSASVNNDCYA 687
K+ + GDL+ +R+A VN +A
Sbjct: 58 KFAKDAEGDLSKLRAALVNEKSFA 81
Score = 46 (21.3 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 735 PKALGDIIESLSGAIFVDSG 754
P L D +E++ GAI +++G
Sbjct: 108 PSILSDALEAIIGAIHLEAG 127
>TIGR_CMR|NSE_0918 [details] [associations]
symbol:NSE_0918 "ribonuclease III" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0004525 "ribonuclease
III activity" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685 HOGENOM:HOG000246809
TIGRFAMs:TIGR02191 OMA:LTHKSCK RefSeq:YP_506782.1
ProteinModelPortal:Q2GCL4 STRING:Q2GCL4 GeneID:3931585
KEGG:nse:NSE_0918 PATRIC:22681823 ProtClustDB:CLSK2528151
BioCyc:NSEN222891:GHFU-920-MONOMER Uniprot:Q2GCL4
Length = 222
Score = 153 (58.9 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 40/104 (38%), Positives = 62/104 (59%)
Query: 605 VNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRC--YQRLEFLGDAVLDYLITVYLY 662
+ + L+SLL F++ LLVEALTH P + +C Y+RLEFLGDAVL+ +I LY
Sbjct: 1 MELEELQSLLGVYFKNKDLLVEALTH-----PSVEKCPSYERLEFLGDAVLNLVIASMLY 55
Query: 663 NKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHI-LHASQE 705
+ +P G L+ +SA + + A+ + + L +I L +S+E
Sbjct: 56 DLFPGDPEGRLSHRQSALICKNTLAMLARQMNLGDYIRLSSSEE 99
Score = 72 (30.4 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 37/142 (26%), Positives = 63/142 (44%)
Query: 712 ITVDSFERLSL-ESTFGWESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEP 770
+ + + RLS E G +TS L +++E+L GAIF+D+G F R
Sbjct: 86 MNLGDYIRLSSSEEAGGGRDKTS---NLENVLEALVGAIFLDAGLETVTCFIKKR-WYGL 141
Query: 771 MITPETMRLQPARELNEYCQKHHFSMKKTVAPRIN--GKAAVTV---EVHANGTLFKHTH 825
+ +++ P L E Q MK + IN G A + + E+ +G K
Sbjct: 142 AVQSDSIEPNPKSTLQELLQAK--GMKPPIYNVINRSGPAHLPIFEIEIRVDGK--KRRA 197
Query: 826 ADADKETAKKVASKEVLKSLKA 847
K+ ++ A++ +L+ LKA
Sbjct: 198 TGKSKKLGEENAARMMLEELKA 219
>UNIPROTKB|P0A7Y0 [details] [associations]
symbol:rnc "RNase III" species:83333 "Escherichia coli
K-12" [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IEA;IDA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA;IDA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0006396 EMBL:D64044 EMBL:U36841
GO:GO:0003725 GO:GO:0008033 GO:GO:0016075 GO:GO:0019843
GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 BRENDA:3.1.26.3 PANTHER:PTHR11207 EMBL:M14658
EMBL:X02673 KO:K03685 HOGENOM:HOG000246809 ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 OMA:LTHKSCK EMBL:X02946 EMBL:M26415 PIR:F65034
RefSeq:NP_417062.1 RefSeq:YP_490795.1 ProteinModelPortal:P0A7Y0
SMR:P0A7Y0 DIP:DIP-48223N IntAct:P0A7Y0 MINT:MINT-1227120
PhosSite:P010446 PaxDb:P0A7Y0 PRIDE:P0A7Y0
EnsemblBacteria:EBESCT00000001804 EnsemblBacteria:EBESCT00000001805
EnsemblBacteria:EBESCT00000015272 GeneID:12931603 GeneID:947033
KEGG:ecj:Y75_p2520 KEGG:eco:b2567 PATRIC:32120533 EchoBASE:EB0850
EcoGene:EG10857 BioCyc:EcoCyc:EG10857-MONOMER
BioCyc:ECOL316407:JW2551-MONOMER BioCyc:MetaCyc:EG10857-MONOMER
Genevestigator:P0A7Y0 Uniprot:P0A7Y0
Length = 226
Score = 136 (52.9 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 607 VRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYP 666
+ L+ L Y+F LL +ALTH S + +RLEFLGD++L Y+I LY+++P
Sbjct: 6 INRLQRKLGYTFNHQELLQQALTHRSAS----SKHNERLEFLGDSILSYVIANALYHRFP 61
Query: 667 TLSPGDLTDMRSASVNNDCYA 687
+ GD++ MR+ V + A
Sbjct: 62 RVDEGDMSRMRATLVRGNTLA 82
Score = 94 (38.1 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 26/114 (22%), Positives = 53/114 (46%)
Query: 738 LGDIIESLSGAIFVDSGCN--KEVVFESIRPLLEPMITPETMRLQPARELNEYCQKHHFS 795
L D +E+L G +F+DS ++++ + L+ I+P + P L EY Q H
Sbjct: 112 LADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDE-ISPGDKQKDPKTRLQEYLQGRHLP 170
Query: 796 MKKTVAPRINGKA---AVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLK 846
+ + ++ G+A T+ +G + + A++ A+++ LK L+
Sbjct: 171 LPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKKLE 224
Score = 84 (34.6 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 431 TIPTSKVLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRI 490
T ++L+ T + H E LE LGDS L Y + L+ + EG +S + +
Sbjct: 16 TFNHQELLQQALTHRSASSKHNERLEFLGDSILSYVIANALYHRFPRVDEGDMSRMRATL 75
Query: 491 ISNAALCKLGCDHKLPGFIRTEPFDPK 517
+ L +L + +L +R P + K
Sbjct: 76 VRGNTLAELAREFELGECLRLGPGELK 102
>TIGR_CMR|BA_3987 [details] [associations]
symbol:BA_3987 "ribonuclease III" species:198094 "Bacillus
anthracis str. Ames" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 ProtClustDB:PRK00102 TIGRFAMs:TIGR02191
RefSeq:NP_846229.1 RefSeq:YP_020627.1 RefSeq:YP_029951.1
ProteinModelPortal:Q81WI8 DNASU:1087539
EnsemblBacteria:EBBACT00000008054 EnsemblBacteria:EBBACT00000016917
EnsemblBacteria:EBBACT00000023512 GeneID:1087539 GeneID:2816770
GeneID:2849362 KEGG:ban:BA_3987 KEGG:bar:GBAA_3987 KEGG:bat:BAS3700
HOGENOM:HOG000246808 OMA:LTHKSCK
BioCyc:BANT260799:GJAJ-3758-MONOMER
BioCyc:BANT261594:GJ7F-3875-MONOMER Uniprot:Q81WI8
Length = 245
Score = 160 (61.4 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 35/96 (36%), Positives = 58/96 (60%)
Query: 591 VPYE--RQFQVQAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQ---RL 645
+PY R+ + + + + + + +F D LL++A TH SY+ + ++ RL
Sbjct: 1 MPYRKYREKKYETKYREAFKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERL 60
Query: 646 EFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASV 681
EFLGDAVL+ ++ YL+ KYPT+S G+LT +R+A V
Sbjct: 61 EFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIV 96
Score = 63 (27.2 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 28/119 (23%), Positives = 52/119 (43%)
Query: 735 PKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETMR--LQPARELNEYCQKH 792
P L D+ E+ GA+++D G E V+ ++ ++ P I + +L E Q+
Sbjct: 129 PALLADVFEAFIGALYLDQGL--ETVWGFLKEIVYPKINEGAFSHVMDYKSQLQELIQRD 186
Query: 793 -----HFSMKKTVAPRINGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLK 846
+ + + P N + V ++ N L + K+ A++ A+ E LK LK
Sbjct: 187 GSGNIEYQILQEKGPAHNREFVSRVTLN-NVAL--GLGSGKSKKEAEQQAAAEALKKLK 242
>TIGR_CMR|CBU_1503 [details] [associations]
symbol:CBU_1503 "ribonuclease III" species:227377
"Coxiella burnetii RSA 493" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 EMBL:L27436
KO:K03685 HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 PIR:S60767 RefSeq:NP_820486.1
ProteinModelPortal:P51837 GeneID:1209413 KEGG:cbu:CBU_1503
PATRIC:17931771 BioCyc:CBUR227377:GJ7S-1488-MONOMER Uniprot:P51837
Length = 233
Score = 138 (53.6 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 37/96 (38%), Positives = 53/96 (55%)
Query: 607 VRHLESL---LNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYN 663
+ HL L L + F + LL ALTH S +RLEFLGD+VL ++I LY
Sbjct: 1 MNHLNKLMERLGHQFNNLELLKIALTHCSSGADN----NERLEFLGDSVLGFIIASELYQ 56
Query: 664 KYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHI 699
+ P GDL+ MR++ VN D A S K G+++++
Sbjct: 57 RRPQAREGDLSRMRASMVNGDELAQMSTKLGINEYL 92
Score = 70 (29.7 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 27/115 (23%), Positives = 51/115 (44%)
Query: 738 LGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETMRLQPARE----LNEYCQKHH 793
L D +E++ GAI++D+G E + + + +L P ++ L E+ Q
Sbjct: 110 LADALEAIVGAIYIDAGL--ETCRRCVLNWYGERVD-DLSKLSPKKDAKSLLQEWLQARR 166
Query: 794 FSMKKTVAPRINGKA---AVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSL 845
+ T +I G+A TV + G K + + A+++A+K L+ L
Sbjct: 167 LPLP-TYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLELL 220
>TIGR_CMR|CPS_4122 [details] [associations]
symbol:CPS_4122 "ribonuclease III" species:167879
"Colwellia psychrerythraea 34H" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 TIGRFAMs:TIGR02191 OMA:LTHKSCK
RefSeq:YP_270777.1 ProteinModelPortal:Q47WP5 STRING:Q47WP5
GeneID:3521712 KEGG:cps:CPS_4122 PATRIC:21471107
BioCyc:CPSY167879:GI48-4135-MONOMER Uniprot:Q47WP5
Length = 266
Score = 150 (57.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 35/76 (46%), Positives = 46/76 (60%)
Query: 606 NVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKY 665
N+ L L Y F +P LLV+ALTH S +RLEFLGD++L ++I LY+K+
Sbjct: 7 NLARLTKKLGYEFNEPLLLVQALTHRSAKGAH----NERLEFLGDSILGFVIAEALYDKF 62
Query: 666 PTLSPGDLTDMRSASV 681
P GDLT MRS+ V
Sbjct: 63 PKHDEGDLTRMRSSLV 78
Score = 60 (26.2 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 738 LGDIIESLSGAIFVDSG--CNKEVVFESIRPLLEPMITPETMRLQPARELNEYCQ 790
L D IE++ GA+++DS C K ++ L +I P + P L E+ Q
Sbjct: 114 LEDAIEAIIGAVYLDSNIECCKALILSWFERRLM-VIKPGNEQKDPKTRLQEFLQ 167
>TIGR_CMR|APH_1149 [details] [associations]
symbol:APH_1149 "ribonuclease III" species:212042
"Anaplasma phagocytophilum HZ" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
RefSeq:YP_505691.1 HSSP:Q9X0I6 ProteinModelPortal:Q2GIW0
STRING:Q2GIW0 GeneID:3930479 KEGG:aph:APH_1149 PATRIC:20951072
HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
BioCyc:APHA212042:GHPM-1155-MONOMER TIGRFAMs:TIGR02191
Uniprot:Q2GIW0
Length = 236
Score = 121 (47.7 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 616 YSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTD 675
Y F+D LL A+TH S + E Y+RLEFLGDAVL +++ LY +P S G LT
Sbjct: 22 YRFQDHELLKTAVTHPS-IAAERYASYERLEFLGDAVLGLVVSEMLYTLFPDDSEGLLTK 80
Query: 676 MRSASV 681
R A V
Sbjct: 81 KRIALV 86
Score = 86 (35.3 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 34/112 (30%), Positives = 57/112 (50%)
Query: 738 LGDIIESLSGAIFVDSGCN--KEVVFESIRPLLEPMI-TPETMRLQPARE-LNEYCQKHH 793
L + +E+L GAI+VD G + + + +PL + TP LQ A+ L E+ Q H+
Sbjct: 122 LENALEALIGAIYVDGGLESVRHFILQHWKPLATNLADTP----LQDAKTALQEWAQGHN 177
Query: 794 FSMKKTVAPRING--KAAV-TVEVHANGTLFKHTHADADKETAKKVASKEVL 842
F++ +G A V TVEV NG + HA K+ ++A+ +++
Sbjct: 178 FAIPSYRLINKSGLEHAPVFTVEVTVNG---QRVHATGCKKKYAEIAAAKLM 226
>DICTYBASE|DDB_G0268410 [details] [associations]
symbol:drnB "putative RNase III" species:44689
"Dictyostelium discoideum" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 dictyBase:DDB_G0268410 GenomeReviews:CM000150_GR
Gene3D:3.30.160.20 EMBL:AAFI02000003 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
RefSeq:XP_647462.2 ProteinModelPortal:Q55FS1
EnsemblProtists:DDB0231869 GeneID:8616269 KEGG:ddi:DDB_G0268410
OMA:NEYENEY ProtClustDB:CLSZ2431100 Uniprot:Q55FS1
Length = 1385
Score = 155 (59.6 bits), Expect = 4.4e-09, Sum P(4) = 4.4e-09
Identities = 51/146 (34%), Positives = 71/146 (48%)
Query: 553 KTVADVVEALIGA-FLSTGGENVGLIFLDRIGIKVDFVNVPYERQFQVQAERLVN--VRH 609
K ADV+EALIGA ++ G + + I + D Y +F+ E L + +R
Sbjct: 1161 KPQADVIEALIGAVYIDRGFFEAYKLTVCWIFDEPDAEYPIYNTKFE---ETLAHQEIRA 1217
Query: 610 LESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLS 669
+ SLL EAL Y + YQRLE++GDAVLD+ ++ +LY +P
Sbjct: 1218 FLDGIGVHISHSSLLEEALCF-PYSFHSASKSYQRLEYVGDAVLDFFVSDFLYATFPLAQ 1276
Query: 670 PGDLTDMRSASVNNDCYALSSVKHGL 695
G LTD RS V N LSS+ L
Sbjct: 1277 EGQLTDYRSRLVRNS--NLSSISRKL 1300
Score = 63 (27.2 bits), Expect = 4.4e-09, Sum P(4) = 4.4e-09
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 453 ESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISN 493
+ LE LGDS LK ++ LF Y EG LS + N
Sbjct: 1095 QRLEFLGDSVLKLVSTIYLFFKYPKMSEGFLSQTRSDFTKN 1135
Score = 55 (24.4 bits), Expect = 4.4e-09, Sum P(4) = 4.4e-09
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 711 NITVDSFER-LSLESTFGWESETSFP-KALGDIIESLSGAIFVDS 753
N + S R L L T + P K LGD +ES G FVD+
Sbjct: 1290 NSNLSSISRKLCLPPTVSKGIRDTLPIKKLGDYLESFIGCCFVDT 1334
Score = 46 (21.3 bits), Expect = 4.4e-09, Sum P(4) = 4.4e-09
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 124 VNQCPQDTKITYHCYLIELK-QNFNYDIPAHDIVLAVRTELESEIKKVNFDLEVD 177
+N+ Q K+ Y E K N D + IV+ E+ES+ KK + E D
Sbjct: 13 LNEWLQKRKLPLSIYHTEYKGSEHNKDFKS--IVIVNGKEIESDWKKTKKESEKD 65
Score = 37 (18.1 bits), Expect = 1.5e-06, Sum P(4) = 1.5e-06
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 521 IPGDNSGSYELNDHSLFNERKIYVTGR--KKVKSKTVADVVEALIGAFL 567
IP N S N+ S K T KK++ V+DVV I ++
Sbjct: 534 IPSTNQFSTYFNN-SQNGHNKFVQTNFDFKKIELSVVSDVVPDFISFYV 581
>UNIPROTKB|H0YJZ6 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR000999 Pfam:PF00636
PROSITE:PS50142 SMART:SM00535 GO:GO:0003723 GO:GO:0006396
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AL356017
EMBL:AL390254 HGNC:HGNC:17098 ChiTaRS:DICER1
Ensembl:ENST00000532939 Uniprot:H0YJZ6
Length = 394
Score = 108 (43.1 bits), Expect = 6.2e-09, Sum P(3) = 6.2e-09
Identities = 25/62 (40%), Positives = 35/62 (56%)
Query: 463 LKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTEPFDPKM-WMI 521
LK+A + LF TY + HEG LS + + +SN L +LG LP + FDP + W+
Sbjct: 2 LKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLP 61
Query: 522 PG 523
PG
Sbjct: 62 PG 63
Score = 87 (35.7 bits), Expect = 6.2e-09, Sum P(3) = 6.2e-09
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 550 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 586
+ K++AD VEAL+G +L++ GE +FL +G+KV
Sbjct: 233 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 269
Score = 61 (26.5 bits), Expect = 6.2e-09, Sum P(3) = 6.2e-09
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 609 HLESLLNYSFRDPSLLVEALTHGSY 633
+ E +NY F++ + L++A TH SY
Sbjct: 347 NFEKKINYRFKNKAYLLQAFTHASY 371
>UNIPROTKB|Q9KPB2 [details] [associations]
symbol:rnc "Ribonuclease 3" species:243277 "Vibrio cholerae
O1 biovar El Tor str. N16961" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0006396 GO:GO:0003725 GO:GO:0008033 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 OMA:LTHKSCK PIR:B82073
RefSeq:NP_232090.1 ProteinModelPortal:Q9KPB2 DNASU:2613003
GeneID:2613003 KEGG:vch:VC2461 PATRIC:20083943 Uniprot:Q9KPB2
Length = 225
Score = 128 (50.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 610 LESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLS 669
L S L Y+F++ LL ALTH S + +RLEFLGD++L ++I LY ++P ++
Sbjct: 8 LTSKLGYTFKETELLNLALTHRSAN----GKHNERLEFLGDSILSFVIADELYRRFPKVN 63
Query: 670 PGDLTDMRSASVNNDCYA 687
GD++ MR+ V + A
Sbjct: 64 EGDMSRMRATLVRGNTLA 81
Score = 102 (41.0 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 23/87 (26%), Positives = 44/87 (50%)
Query: 431 TIPTSKVLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRI 490
T +++L T + G H E LE LGDS L + + +L++ + +EG +S + +
Sbjct: 15 TFKETELLNLALTHRSANGKHNERLEFLGDSILSFVIADELYRRFPKVNEGDMSRMRATL 74
Query: 491 ISNAALCKLGCDHKLPGFIRTEPFDPK 517
+ L +LG + L +++ P + K
Sbjct: 75 VRGNTLAELGREFDLGDYLKLGPGELK 101
Score = 71 (30.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 28/113 (24%), Positives = 45/113 (39%)
Query: 738 LGDIIESLSGAIFVDSGCN--KEVVFESIRPLLEPMITPETMRLQPARELNEYCQKHHFS 795
L D +E++ GAI++DS + +V E LE I P + P L E+ Q
Sbjct: 111 LADAVEAIIGAIYLDSDLETARSIVLEWYHGRLEE-IKPGASQKDPKTRLQEFLQGRRKP 169
Query: 796 MKKTVAPRINGKA---AVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSL 845
+ I G+A TV G + A++ A++ L+ L
Sbjct: 170 LPVYTVTNIKGEAHNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222
>TIGR_CMR|VC_2461 [details] [associations]
symbol:VC_2461 "ribonuclease III" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0006396 GO:GO:0003725 GO:GO:0008033 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 OMA:LTHKSCK PIR:B82073
RefSeq:NP_232090.1 ProteinModelPortal:Q9KPB2 DNASU:2613003
GeneID:2613003 KEGG:vch:VC2461 PATRIC:20083943 Uniprot:Q9KPB2
Length = 225
Score = 128 (50.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 610 LESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLS 669
L S L Y+F++ LL ALTH S + +RLEFLGD++L ++I LY ++P ++
Sbjct: 8 LTSKLGYTFKETELLNLALTHRSAN----GKHNERLEFLGDSILSFVIADELYRRFPKVN 63
Query: 670 PGDLTDMRSASVNNDCYA 687
GD++ MR+ V + A
Sbjct: 64 EGDMSRMRATLVRGNTLA 81
Score = 102 (41.0 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 23/87 (26%), Positives = 44/87 (50%)
Query: 431 TIPTSKVLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRI 490
T +++L T + G H E LE LGDS L + + +L++ + +EG +S + +
Sbjct: 15 TFKETELLNLALTHRSANGKHNERLEFLGDSILSFVIADELYRRFPKVNEGDMSRMRATL 74
Query: 491 ISNAALCKLGCDHKLPGFIRTEPFDPK 517
+ L +LG + L +++ P + K
Sbjct: 75 VRGNTLAELGREFDLGDYLKLGPGELK 101
Score = 71 (30.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 28/113 (24%), Positives = 45/113 (39%)
Query: 738 LGDIIESLSGAIFVDSGCN--KEVVFESIRPLLEPMITPETMRLQPARELNEYCQKHHFS 795
L D +E++ GAI++DS + +V E LE I P + P L E+ Q
Sbjct: 111 LADAVEAIIGAIYLDSDLETARSIVLEWYHGRLEE-IKPGASQKDPKTRLQEFLQGRRKP 169
Query: 796 MKKTVAPRINGKA---AVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSL 845
+ I G+A TV G + A++ A++ L+ L
Sbjct: 170 LPVYTVTNIKGEAHNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222
>TIGR_CMR|SO_1348 [details] [associations]
symbol:SO_1348 "ribonuclease III" species:211586
"Shewanella oneidensis MR-1" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 RefSeq:NP_716968.1 ProteinModelPortal:Q8EH81
GeneID:1169169 KEGG:son:SO_1348 PATRIC:23522350 Uniprot:Q8EH81
Length = 226
Score = 138 (53.6 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 36/105 (34%), Positives = 56/105 (53%)
Query: 602 ERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYL 661
E + N+ L L Y F++ LL +ALTH S + +RLEFLGD++L +I+ L
Sbjct: 2 EPIKNLPRLCRTLGYEFKNLDLLTQALTHRS----AANKHNERLEFLGDSILSIVISDAL 57
Query: 662 YNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQEL 706
Y+++P + GDL+ MR+ V D L + L ++ EL
Sbjct: 58 YHQFPKATEGDLSRMRATLVRGDTLTLIAQAFKLGDYLFLGPGEL 102
Score = 58 (25.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 29/119 (24%), Positives = 50/119 (42%)
Query: 738 LGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITPETMRLQPA---RELNEYCQKHHF 794
L D +E++ GAI++DS E R LL +QP ++ Q++
Sbjct: 113 LADAVEAIIGAIYLDSD------LEVCRQLLLNWYAERLAEIQPGINQKDAKTLLQEYLQ 166
Query: 795 SMKKTVAP----RINGKA---AVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLK 846
+KK + I G A TVE + + + A+++A+ +VL+ LK
Sbjct: 167 GLKKPLPDYQVINIEGDAHDQTFTVECRIDDLSQSVIGVASSRRKAEQIAAAQVLELLK 225
>TIGR_CMR|ECH_1054 [details] [associations]
symbol:ECH_1054 "ribonuclease III" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003725 "double-stranded
RNA binding" evidence=ISS] [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HSSP:Q9X0I6 HOGENOM:HOG000246809 ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 OMA:LTHKSCK RefSeq:YP_507839.1
ProteinModelPortal:Q2GFE4 STRING:Q2GFE4 GeneID:3927257
KEGG:ech:ECH_1054 PATRIC:20577460
BioCyc:ECHA205920:GJNR-1057-MONOMER Uniprot:Q2GFE4
Length = 226
Score = 144 (55.7 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 607 VRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRC-YQRLEFLGDAVLDYLITVYLYNKY 665
+ + ++ Y+F++P LL EALTH S + + + Y+RLEFLGDAVL+ +I+ L+N +
Sbjct: 2 IESISKIIKYNFKNPQLLNEALTHPSLVSKDTLKFNYERLEFLGDAVLNIVISEMLFNIF 61
Query: 666 PTLSPGDLTDMRSASV 681
P + G+L ++A V
Sbjct: 62 PKDTEGNLAKKKTALV 77
Score = 42 (19.8 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 738 LGDIIESLSGAIFVDSG 754
L + +E+L GAI++D G
Sbjct: 113 LENALEALIGAIYLDGG 129
>DICTYBASE|DDB_G0274077 [details] [associations]
symbol:drnA-2 "putative RNAse III DrnA" species:44689
"Dictyostelium discoideum" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159 Pfam:PF00035
Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
SMART:SM00358 SMART:SM00535 InterPro:IPR014720
dictyBase:DDB_G0274077 dictyBase:DDB_G0273051 Gene3D:3.30.160.20
GenomeReviews:CM000151_GR GO:GO:0005622 EMBL:AAFI02000011
EMBL:AAFI02000009 GO:GO:0006396 GO:GO:0003725 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
ProtClustDB:CLSZ2431100 EMBL:AJ314911 RefSeq:XP_644397.1
RefSeq:XP_645016.1 ProteinModelPortal:Q95ZG5
EnsemblProtists:DDB0220441 EnsemblProtists:DDB0238743
GeneID:8618693 GeneID:8619283 KEGG:ddi:DDB_G0273051
KEGG:ddi:DDB_G0274077 Uniprot:Q95ZG5
Length = 1203
Score = 123 (48.4 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 643 QRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHA 702
+RLEFLGDAVLD+++ YL++KY G LT+ +S VNN+ LS + +K+I
Sbjct: 1102 ERLEFLGDAVLDFIVADYLFSKYKEQQEGYLTESKSKLVNNE--NLSKILKS-NKNIFSP 1158
Query: 703 SQE 705
SQ+
Sbjct: 1159 SQQ 1161
Score = 94 (38.1 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 453 ESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKL 499
+ LE LGDS LK +S LFK + N EGLLS K++ N L +L
Sbjct: 926 QRLEFLGDSVLKITSSLYLFKKFDNEGEGLLSKKREFYTKNEYLTEL 972
Score = 43 (20.2 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 552 SKTVADVVEALIGA-FLSTG 570
SK AD++EA IGA ++ G
Sbjct: 991 SKPHADLIEAFIGAIYIECG 1010
Score = 41 (19.5 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 736 KALGDIIESLSGAIFVDSGCNK 757
K +GD IES G ++ G K
Sbjct: 1170 KRMGDHIESYIGGFYLKFGFEK 1191
>DICTYBASE|DDB_G0273051 [details] [associations]
symbol:drnA-1 "putative RNAse III DrnA" species:44689
"Dictyostelium discoideum" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159 Pfam:PF00035
Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
SMART:SM00358 SMART:SM00535 InterPro:IPR014720
dictyBase:DDB_G0274077 dictyBase:DDB_G0273051 Gene3D:3.30.160.20
GenomeReviews:CM000151_GR GO:GO:0005622 EMBL:AAFI02000011
EMBL:AAFI02000009 GO:GO:0006396 GO:GO:0003725 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
ProtClustDB:CLSZ2431100 EMBL:AJ314911 RefSeq:XP_644397.1
RefSeq:XP_645016.1 ProteinModelPortal:Q95ZG5
EnsemblProtists:DDB0220441 EnsemblProtists:DDB0238743
GeneID:8618693 GeneID:8619283 KEGG:ddi:DDB_G0273051
KEGG:ddi:DDB_G0274077 Uniprot:Q95ZG5
Length = 1203
Score = 123 (48.4 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 28/63 (44%), Positives = 41/63 (65%)
Query: 643 QRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHA 702
+RLEFLGDAVLD+++ YL++KY G LT+ +S VNN+ LS + +K+I
Sbjct: 1102 ERLEFLGDAVLDFIVADYLFSKYKEQQEGYLTESKSKLVNNE--NLSKILKS-NKNIFSP 1158
Query: 703 SQE 705
SQ+
Sbjct: 1159 SQQ 1161
Score = 94 (38.1 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 453 ESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKL 499
+ LE LGDS LK +S LFK + N EGLLS K++ N L +L
Sbjct: 926 QRLEFLGDSVLKITSSLYLFKKFDNEGEGLLSKKREFYTKNEYLTEL 972
Score = 43 (20.2 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 552 SKTVADVVEALIGA-FLSTG 570
SK AD++EA IGA ++ G
Sbjct: 991 SKPHADLIEAFIGAIYIECG 1010
Score = 41 (19.5 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 736 KALGDIIESLSGAIFVDSGCNK 757
K +GD IES G ++ G K
Sbjct: 1170 KRMGDHIESYIGGFYLKFGFEK 1191
>UNIPROTKB|Q61XX9 [details] [associations]
symbol:drsh-1 "Ribonuclease 3" species:6238 "Caenorhabditis
briggsae" [GO:0004525 "ribonuclease III activity" evidence=ISS]
[GO:0019953 "sexual reproduction" evidence=ISS] [GO:0031053
"primary miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005634 GO:GO:0030154
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0007506 GO:GO:0003725
GO:GO:0016075 GO:GO:0019953 GO:GO:0006364 EMBL:HE600906
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
GO:GO:0031053 PANTHER:PTHR11207 KO:K03685 RefSeq:XP_002639240.1
HSSP:O67082 ProteinModelPortal:Q61XX9 EnsemblMetazoa:CBG03798
GeneID:8581234 KEGG:cbr:CBG03798 CTD:8581234 WormBase:CBG03798
HOGENOM:HOG000154167 OMA:FNIMGGE Uniprot:Q61XX9
Length = 1061
Score = 122 (48.0 bits), Expect = 2.4e-07, Sum P(4) = 2.4e-07
Identities = 28/100 (28%), Positives = 54/100 (54%)
Query: 604 LVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY-QRLEFLGDAVLDYLITVYLY 662
L + LE ++ F + LL +A T + ++ + + QRLE+LGD+VL +I+ YLY
Sbjct: 808 LTDFHRLEQIIGIEFNNIRLLAKAFTRRNVPFNDLTKGHNQRLEWLGDSVLQLIISDYLY 867
Query: 663 NKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHA 702
+P G ++ +R++ V+N ++ G + ++ A
Sbjct: 868 RNFPLHHEGHMSLLRTSLVSNQTQSVVCDDLGFQEFVIKA 907
Score = 85 (35.0 bits), Expect = 2.4e-07, Sum P(4) = 2.4e-07
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 451 HLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKL 505
H E LE LGD+ ++ AS LF +H EG L+ + ++ N L KL + ++
Sbjct: 667 HNERLEYLGDAVVELIASHHLFFILNHHFEGGLATYRTALVQNRNLAKLAMNCRI 721
Score = 54 (24.1 bits), Expect = 2.4e-07, Sum P(4) = 2.4e-07
Identities = 33/126 (26%), Positives = 51/126 (40%)
Query: 736 KALGDIIESLSGAIFVDSGCN--KEVVFESIRPLLEPMITPETMRLQPARELNEYCQKHH 793
K D++E+ GA++VD G + + P L+ I E L ++C
Sbjct: 917 KDKADLVEAFIGALYVDKGLEYCRSFIRTVFCPRLKHFINSEKWN-DAKSHLQQWCLAIR 975
Query: 794 FSMKKTVA-P--RINGKAAVT------VEVHANGTLFKHTHADADKETAKKVASKEVLKS 844
S A P R+ G T V V+ G A ++ TA+ A++ L +
Sbjct: 976 DSRNPNPAMPEYRLLGIQGPTNNRIFRVAVYFRGERLSSAAA-SNMHTAELKAAENALAA 1034
Query: 845 L-KASF 849
L KASF
Sbjct: 1035 LEKASF 1040
Score = 37 (18.1 bits), Expect = 2.4e-07, Sum P(4) = 2.4e-07
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 34 KPTPKFDINKEMGICTLYLPNNC 56
+P K+ I+ E + ++P C
Sbjct: 335 RPVFKYSIDYEFQLIEEFMPTEC 357
>UNIPROTKB|P66666 [details] [associations]
symbol:rnc "Ribonuclease 3" species:1773 "Mycobacterium
tuberculosis" [GO:0040007 "growth" evidence=IMP] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005737 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
EMBL:BX842581 GO:GO:0016075 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 ProtClustDB:PRK00102 TIGRFAMs:TIGR02191
HOGENOM:HOG000246808 OMA:LTHKSCK PIR:E70748 RefSeq:NP_217441.1
RefSeq:NP_337508.1 RefSeq:YP_006516379.1 PDB:2A11 PDBsum:2A11
ProteinModelPortal:P66666 SMR:P66666 PRIDE:P66666
EnsemblBacteria:EBMYCT00000002463 EnsemblBacteria:EBMYCT00000072869
GeneID:13317719 GeneID:887873 GeneID:925280 KEGG:mtc:MT2995
KEGG:mtu:Rv2925c KEGG:mtv:RVBD_2925c PATRIC:18128352
TubercuList:Rv2925c EvolutionaryTrace:P66666 Uniprot:P66666
Length = 240
Score = 123 (48.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 35/83 (42%), Positives = 47/83 (56%)
Query: 623 LLVEALTHGSYMLPE--IPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSAS 680
LL ALTH SY +P +RLEFLGDAVL IT L++++P S GDL +R++
Sbjct: 20 LLSLALTHRSYAYENGGLPT-NERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASV 78
Query: 681 VNNDCYALSSVK---HGLHKHIL 700
VN A + + GL H+L
Sbjct: 79 VNTQALADVARRLCAEGLGVHVL 101
Score = 59 (25.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 738 LGDIIESLSGAIFVDSGCNK--EVVFESIRPLLE 769
L D +ESL GAI++ G K EV+ PLL+
Sbjct: 118 LADGMESLLGAIYLQHGMEKAREVILRLFGPLLD 151
>TIGR_CMR|DET_1025 [details] [associations]
symbol:DET_1025 "ribonuclease III" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
TIGRFAMs:TIGR02191 HOGENOM:HOG000246808 OMA:LTHKSCK
RefSeq:YP_181741.1 ProteinModelPortal:Q3Z7Q8 STRING:Q3Z7Q8
GeneID:3229696 KEGG:det:DET1025 PATRIC:21609095
ProtClustDB:CLSK837151 BioCyc:DETH243164:GJNF-1026-MONOMER
Uniprot:Q3Z7Q8
Length = 237
Score = 127 (49.8 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 33/99 (33%), Positives = 53/99 (53%)
Query: 604 LVNVRHLESLLNYSFRDPSLLVEALTHGSYML--PE-IPRCYQRLEFLGDAVLDYLITVY 660
++++ LE L F + SLL +AL H S++ P + +R+EFLGDAVL +
Sbjct: 1 MLDLTELEKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFADR 60
Query: 661 LYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHI 699
LY+ +P + GDLT RS V + ++ L K++
Sbjct: 61 LYHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYL 99
Score = 53 (23.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 27/120 (22%), Positives = 48/120 (40%)
Query: 735 PKALGDIIESLSGAIFVDSGCN--KEVVFESIRPLLEPMITPETMRLQPARELNEYCQKH 792
P L E++ AI++D G + +EV+F + +E + T + + L E Q
Sbjct: 114 PANLAGAFEAVLAAIYLDKGIDATREVIFRLFKTEMERVQTLSS-NIDYKSRLQELVQAQ 172
Query: 793 HFSMKKTVAPRINGKA---AVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKASF 849
+ +G EV+ + + KE A+ A+KE L+ + SF
Sbjct: 173 FQLTPRYRIIDFSGPEHNHLFIAEVYTEDKVLAEGSGRSKKE-AETSAAKEALQQFENSF 231
>UNIPROTKB|F1PJL5 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 EMBL:AAEX03003196
Ensembl:ENSCAFT00000030086 OMA:TSICAFD Uniprot:F1PJL5
Length = 627
Score = 122 (48.0 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 643 QRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHA 702
+RLEFLGDAV+++L +V+LY +P+L G L R+A V N A+ + K L + +L+A
Sbjct: 219 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYA 278
Score = 107 (42.7 bits), Expect = 3.4e-05, Sum P(4) = 3.4e-05
Identities = 30/108 (27%), Positives = 52/108 (48%)
Query: 594 ERQFQVQAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY-QRLEFLGDAV 652
+RQ + L + E + F LL A T + + + QR+EFLGD++
Sbjct: 347 DRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSI 406
Query: 653 LDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHIL 700
+ + T YL+ +P G LT +RS+ VNN A + + G+ ++ +
Sbjct: 407 MQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 454
Score = 71 (30.1 bits), Expect = 3.4e-05, Sum P(4) = 3.4e-05
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 451 HLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFI 509
H E LE LGD+ +++ S L+ + + EG L+ + I+ N L L +L F+
Sbjct: 217 HNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 275
Score = 66 (28.3 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 609 HLESLLNYSFRDPSLLVEALTHGSYML 635
HL+ L+ Y+F+D LL A+TH S+ L
Sbjct: 131 HLDKLIGYTFQDRCLLQLAMTHPSHHL 157
Score = 50 (22.7 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 736 KALGDIIESLSGAIFVDSGCNKEVVFESIR--PLLEPMITPETMRLQPARELNEYC 789
K L D++ES A+++D F ++ P L+ I + P +L + C
Sbjct: 468 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWN-DPKSQLQQCC 522
Score = 38 (18.4 bits), Expect = 3.4e-05, Sum P(4) = 3.4e-05
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 333 YEERYGIQLCFDQELL-LN-GRRIFHAQNYLSKC--RQEK 368
+++R +QL LN G HA+N LS C RQ K
Sbjct: 140 FQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPK 179
>UNIPROTKB|F1NQC9 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0010586
"miRNA metabolic process" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:AADN02007047
IPI:IPI00583351 Ensembl:ENSGALT00000021065 Uniprot:F1NQC9
Length = 1336
Score = 126 (49.4 bits), Expect = 1.4e-05, Sum P(5) = 1.4e-05
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 643 QRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHA 702
+RLEFLGDAV+++L +V+LY +PTL G L R+A V N A+ + K L + +L+A
Sbjct: 928 ERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYA 987
Score = 70 (29.7 bits), Expect = 1.4e-05, Sum P(5) = 1.4e-05
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 609 HLESLLNYSFRDPSLLVEALTHGSYML 635
HL+ L+ Y+FRD LL A+TH S+ L
Sbjct: 840 HLDKLIGYTFRDRCLLQLAMTHPSHHL 866
Score = 50 (22.7 bits), Expect = 1.4e-05, Sum P(5) = 1.4e-05
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 736 KALGDIIESLSGAIFVDSGCNKEVVFESIR--PLLEPMITPETMRLQPARELNEYC 789
K L D++ES A+++D F ++ P L+ I + P +L + C
Sbjct: 1177 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWN-DPKSQLQQCC 1231
Score = 40 (19.1 bits), Expect = 1.4e-05, Sum P(5) = 1.4e-05
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 214 DHNLDKLNEILKGLWLR 230
+ N D+ +E+LK +W+R
Sbjct: 360 EKNEDEDDELLKPVWVR 376
Score = 38 (18.4 bits), Expect = 1.4e-05, Sum P(5) = 1.4e-05
Identities = 6/10 (60%), Positives = 6/10 (60%)
Query: 279 QTKSGPLCTC 288
Q GPLC C
Sbjct: 491 QMNDGPLCKC 500
>UNIPROTKB|F1LQY5 [details] [associations]
symbol:F1LQY5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0006396 GO:GO:0003725 GO:GO:0016075 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 IPI:IPI00870720
Ensembl:ENSRNOT00000018032 ArrayExpress:F1LQY5 Uniprot:F1LQY5
Length = 1018
Score = 122 (48.0 bits), Expect = 2.7e-05, Sum P(4) = 2.7e-05
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 643 QRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHA 702
+RLEFLGDAV+++L +V+LY +P+L G L R+A V N A+ + K L + +L+A
Sbjct: 610 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYA 669
Score = 107 (42.7 bits), Expect = 0.00033, Sum P(5) = 0.00033
Identities = 30/108 (27%), Positives = 52/108 (48%)
Query: 594 ERQFQVQAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY-QRLEFLGDAV 652
+RQ + L + E + F LL A T + + + QR+EFLGD++
Sbjct: 738 DRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSI 797
Query: 653 LDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHIL 700
+ + T YL+ +P G LT +RS+ VNN A + + G+ ++ +
Sbjct: 798 MQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 845
Score = 71 (30.1 bits), Expect = 0.00033, Sum P(5) = 0.00033
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 451 HLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFI 509
H E LE LGD+ +++ S L+ + + EG L+ + I+ N L L +L F+
Sbjct: 608 HNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 666
Score = 66 (28.3 bits), Expect = 2.7e-05, Sum P(4) = 2.7e-05
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 609 HLESLLNYSFRDPSLLVEALTHGSYML 635
HL+ L+ Y+F+D LL A+TH S+ L
Sbjct: 522 HLDKLIGYTFQDRCLLQLAMTHPSHHL 548
Score = 50 (22.7 bits), Expect = 2.7e-05, Sum P(4) = 2.7e-05
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 736 KALGDIIESLSGAIFVDSGCNKEVVFESIR--PLLEPMITPETMRLQPARELNEYC 789
K L D++ES A+++D F ++ P L+ I + P +L + C
Sbjct: 859 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWN-DPKSQLQQCC 913
Score = 38 (18.4 bits), Expect = 2.7e-05, Sum P(4) = 2.7e-05
Identities = 6/10 (60%), Positives = 6/10 (60%)
Query: 279 QTKSGPLCTC 288
Q GPLC C
Sbjct: 173 QMNDGPLCKC 182
Score = 38 (18.4 bits), Expect = 0.00033, Sum P(5) = 0.00033
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 333 YEERYGIQLCFDQELL-LN-GRRIFHAQNYLSKC--RQEK 368
+++R +QL LN G HA+N LS C RQ K
Sbjct: 531 FQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPK 570
>FB|FBgn0026722 [details] [associations]
symbol:drosha "drosha" species:7227 "Drosophila melanogaster"
[GO:0031053 "primary miRNA processing" evidence=ISS;IMP]
[GO:0005634 "nucleus" evidence=ISS] [GO:0004525 "ribonuclease III
activity" evidence=ISS;NAS] [GO:0003725 "double-stranded RNA
binding" evidence=IEA;ISS] [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030727
"germarium-derived female germ-line cyst formation" evidence=IMP]
[GO:0007294 "germarium-derived oocyte fate determination"
evidence=IMP] HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 EMBL:AE013599 GO:GO:0007294 GO:GO:0022008
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725 GO:GO:0016075
GO:GO:0030727 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 GO:GO:0031053 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 KO:K03685 HSSP:O67082 OMA:RFHKSLD
CTD:29102 ChiTaRS:DROSHA EMBL:AF116572 EMBL:BT023503
RefSeq:NP_477436.1 UniGene:Dm.4482 SMR:Q7KNF1 IntAct:Q7KNF1
STRING:Q7KNF1 EnsemblMetazoa:FBtr0088850 GeneID:35747
KEGG:dme:Dmel_CG8730 UCSC:CG8730-RA FlyBase:FBgn0026722
InParanoid:Q7KNF1 OrthoDB:EOG4BRV1K GenomeRNAi:35747 NextBio:795024
Uniprot:Q7KNF1
Length = 1327
Score = 120 (47.3 bits), Expect = 2.7e-05, Sum P(5) = 2.7e-05
Identities = 33/101 (32%), Positives = 49/101 (48%)
Query: 604 LVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPR-CYQRLEFLGDAVLDYLITVYLY 662
L + E + F+ LL A T S + QRLEFLGD VL + + YLY
Sbjct: 972 LKELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLY 1031
Query: 663 NKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHAS 703
+P G L+ +RS+ VNN A+ G+ K+ ++A+
Sbjct: 1032 RHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYAN 1072
Score = 70 (29.7 bits), Expect = 2.7e-05, Sum P(5) = 2.7e-05
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 451 HLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFI 509
H E LE LGD+ +++ +S LF + EG L+ + I+ N L L +L F+
Sbjct: 831 HNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFM 889
Score = 48 (22.0 bits), Expect = 2.7e-05, Sum P(5) = 2.7e-05
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 736 KALGDIIESLSGAIFVDSG---CNKEVVFESIRPLLEPMITPETMRLQPARELNEYC 789
K D++E+ GA++VD G C ++ + P L+ I + P +L + C
Sbjct: 1080 KDRADLLEAFLGALYVDKGLLYC-EQFCHVCLFPRLQLFIMNQDWN-DPKSKLQQCC 1134
Score = 45 (20.9 bits), Expect = 2.7e-05, Sum P(5) = 2.7e-05
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 555 VADVVEALIGAFLSTGGENVG-LIFLDRI 582
+A+ EAL+GA L GG V +F D +
Sbjct: 907 MANCFEALMGALLLDGGIKVADEVFTDAL 935
Score = 38 (18.4 bits), Expect = 2.7e-05, Sum P(5) = 2.7e-05
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 340 QLC--FDQELLLNGRRI 354
+LC FD+ELL +R+
Sbjct: 297 KLCTLFDEELLQRAKRV 313
>UNIPROTKB|Q9NRR4 [details] [associations]
symbol:DROSHA "Ribonuclease 3" species:9606 "Homo sapiens"
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0010586 "miRNA metabolic process" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_71 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0010467 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0042254
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
BRENDA:3.1.26.3 PANTHER:PTHR11207 KO:K03685 EMBL:AF189011
EMBL:AC008768 EMBL:AC022417 EMBL:AC106802 EMBL:AJ242976
EMBL:AK001121 EMBL:BC041162 EMBL:BC054003 EMBL:AF116910
IPI:IPI00219990 IPI:IPI00300956 IPI:IPI00942044 RefSeq:NP_037367.3
UniGene:Hs.97997 PDB:2KHX PDBsum:2KHX ProteinModelPortal:Q9NRR4
SMR:Q9NRR4 DIP:DIP-33300N IntAct:Q9NRR4 MINT:MINT-1184869
STRING:Q9NRR4 PhosphoSite:Q9NRR4 DMDM:20139357 PaxDb:Q9NRR4
PRIDE:Q9NRR4 Ensembl:ENST00000344624 Ensembl:ENST00000511367
GeneID:29102 KEGG:hsa:29102 UCSC:uc003jhg.2 CTD:29102
GeneCards:GC05M031401 H-InvDB:HIX0004780 HGNC:HGNC:17904 MIM:608828
neXtProt:NX_Q9NRR4 PharmGKB:PA142671060 HOGENOM:HOG000122291
HOVERGEN:HBG023130 InParanoid:Q9NRR4 OMA:SGKEKNY OrthoDB:EOG4VQ9NG
ChiTaRS:DROSHA EvolutionaryTrace:Q9NRR4 GenomeRNAi:29102
NextBio:52141 ArrayExpress:Q9NRR4 Bgee:Q9NRR4 CleanEx:HS_RNASEN
Genevestigator:Q9NRR4 GermOnline:ENSG00000113360 Uniprot:Q9NRR4
Length = 1374
Score = 122 (48.0 bits), Expect = 4.9e-05, Sum P(4) = 4.9e-05
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 643 QRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHA 702
+RLEFLGDAV+++L +V+LY +P+L G L R+A V N A+ + K L + +L+A
Sbjct: 966 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYA 1025
Score = 107 (42.7 bits), Expect = 0.00076, Sum P(6) = 0.00076
Identities = 30/108 (27%), Positives = 52/108 (48%)
Query: 594 ERQFQVQAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY-QRLEFLGDAV 652
+RQ + L + E + F LL A T + + + QR+EFLGD++
Sbjct: 1094 DRQLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSI 1153
Query: 653 LDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHIL 700
+ + T YL+ +P G LT +RS+ VNN A + + G+ ++ +
Sbjct: 1154 MQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 1201
Score = 71 (30.1 bits), Expect = 0.00076, Sum P(6) = 0.00076
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 451 HLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFI 509
H E LE LGD+ +++ S L+ + + EG L+ + I+ N L L +L F+
Sbjct: 964 HNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1022
Score = 66 (28.3 bits), Expect = 4.9e-05, Sum P(4) = 4.9e-05
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 609 HLESLLNYSFRDPSLLVEALTHGSYML 635
HL+ L+ Y+F+D LL A+TH S+ L
Sbjct: 878 HLDKLIGYTFQDRCLLQLAMTHPSHHL 904
Score = 50 (22.7 bits), Expect = 4.9e-05, Sum P(4) = 4.9e-05
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 736 KALGDIIESLSGAIFVDSGCNKEVVFESIR--PLLEPMITPETMRLQPARELNEYC 789
K L D++ES A+++D F ++ P L+ I + P +L + C
Sbjct: 1215 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWN-DPKSQLQQCC 1269
Score = 41 (19.5 bits), Expect = 4.9e-05, Sum P(4) = 4.9e-05
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 372 PSKISFELPPELCRIIMGPMSLSTFYS--FTFVPS 404
P +++++ PP P S ++F + +F+PS
Sbjct: 161 PQQVNYQYPPGYSHHNFPPPSFNSFQNNPSSFLPS 195
Score = 41 (19.5 bits), Expect = 7.5e-05, Sum P(5) = 7.5e-05
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 214 DHNLDKLNEILKGLWLR 230
D N ++ E+LK +W+R
Sbjct: 398 DKNEEEEEELLKPVWIR 414
Score = 38 (18.4 bits), Expect = 7.5e-05, Sum P(5) = 7.5e-05
Identities = 6/10 (60%), Positives = 6/10 (60%)
Query: 279 QTKSGPLCTC 288
Q GPLC C
Sbjct: 529 QMNDGPLCKC 538
Score = 38 (18.4 bits), Expect = 0.00076, Sum P(6) = 0.00076
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 333 YEERYGIQLCFDQELL-LN-GRRIFHAQNYLSKC--RQEK 368
+++R +QL LN G HA+N LS C RQ K
Sbjct: 887 FQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPK 926
>TIGR_CMR|GSU_2228 [details] [associations]
symbol:GSU_2228 "ribonuclease III" species:243231
"Geobacter sulfurreducens PCA" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 TIGRFAMs:TIGR02191 OMA:LTHKSCK
RefSeq:NP_953277.1 ProteinModelPortal:Q74AX1 GeneID:2687587
KEGG:gsu:GSU2228 PATRIC:22027311 ProtClustDB:CLSK828768
BioCyc:GSUL243231:GH27-2184-MONOMER Uniprot:Q74AX1
Length = 248
Score = 126 (49.4 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 33/82 (40%), Positives = 43/82 (52%)
Query: 610 LESLLNYSFRDPSLLVEALTHGSYM----LPEIPRCYQRLEFLGDAVLDYLITVYLYNKY 665
LE+ + Y F D L EALTH S++ P +P +RLEF GDA+L + I L Y
Sbjct: 19 LETSIGYRFTDRRFLDEALTHRSWLNEVRSPTVPD-NERLEFFGDAILGFCIGKMLLRHY 77
Query: 666 PTLSPGDLTDMRSASVNNDCYA 687
P G L M+SA V + A
Sbjct: 78 PESREGALARMKSALVGEETLA 99
>UNIPROTKB|F1SP38 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:CU633306
EMBL:FP325179 EMBL:FP326694 Ensembl:ENSSSCT00000018300
ArrayExpress:F1SP38 Uniprot:F1SP38
Length = 1328
Score = 122 (48.0 bits), Expect = 6.3e-05, Sum P(5) = 6.3e-05
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 643 QRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHA 702
+RLEFLGDAV+++L +V+LY +P+L G L R+A V N A+ + K L + +L+A
Sbjct: 920 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYA 979
Score = 107 (42.7 bits), Expect = 0.00063, Sum P(6) = 0.00063
Identities = 30/108 (27%), Positives = 52/108 (48%)
Query: 594 ERQFQVQAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY-QRLEFLGDAV 652
+RQ + L + E + F LL A T + + + QR+EFLGD++
Sbjct: 1048 DRQLIETSPVLQKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSI 1107
Query: 653 LDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHIL 700
+ + T YL+ +P G LT +RS+ VNN A + + G+ ++ +
Sbjct: 1108 MQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 1155
Score = 71 (30.1 bits), Expect = 0.00063, Sum P(6) = 0.00063
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 451 HLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFI 509
H E LE LGD+ +++ S L+ + + EG L+ + I+ N L L +L F+
Sbjct: 918 HNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 976
Score = 66 (28.3 bits), Expect = 6.3e-05, Sum P(5) = 6.3e-05
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 609 HLESLLNYSFRDPSLLVEALTHGSYML 635
HL+ L+ Y+F+D LL A+TH S+ L
Sbjct: 832 HLDKLIGYTFQDRCLLQLAMTHPSHHL 858
Score = 50 (22.7 bits), Expect = 6.3e-05, Sum P(5) = 6.3e-05
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 736 KALGDIIESLSGAIFVDSGCNKEVVFESIR--PLLEPMITPETMRLQPARELNEYC 789
K L D++ES A+++D F ++ P L+ I + P +L + C
Sbjct: 1169 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWN-DPKSQLQQCC 1223
Score = 41 (19.5 bits), Expect = 6.3e-05, Sum P(5) = 6.3e-05
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 214 DHNLDKLNEILKGLWLR 230
D N ++ E+LK +W+R
Sbjct: 352 DKNEEEEEELLKPVWIR 368
Score = 38 (18.4 bits), Expect = 6.3e-05, Sum P(5) = 6.3e-05
Identities = 6/10 (60%), Positives = 6/10 (60%)
Query: 279 QTKSGPLCTC 288
Q GPLC C
Sbjct: 483 QMNDGPLCKC 492
Score = 38 (18.4 bits), Expect = 0.00063, Sum P(6) = 0.00063
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 333 YEERYGIQLCFDQELL-LN-GRRIFHAQNYLSKC--RQEK 368
+++R +QL LN G HA+N LS C RQ K
Sbjct: 841 FQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPK 880
>UNIPROTKB|E1BGY0 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:DAAA02050706
IPI:IPI00718255 Ensembl:ENSBTAT00000023346 Uniprot:E1BGY0
Length = 1368
Score = 122 (48.0 bits), Expect = 7.4e-05, Sum P(5) = 7.4e-05
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 643 QRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHA 702
+RLEFLGDAV+++L +V+LY +P+L G L R+A V N A+ + K L + +L+A
Sbjct: 960 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYA 1019
Score = 107 (42.7 bits), Expect = 0.00074, Sum P(6) = 0.00074
Identities = 30/108 (27%), Positives = 52/108 (48%)
Query: 594 ERQFQVQAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY-QRLEFLGDAV 652
+RQ + L + E + F LL A T + + + QR+EFLGD++
Sbjct: 1088 DRQLIETSPVLQKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSI 1147
Query: 653 LDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHIL 700
+ + T YL+ +P G LT +RS+ VNN A + + G+ ++ +
Sbjct: 1148 MQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 1195
Score = 71 (30.1 bits), Expect = 0.00074, Sum P(6) = 0.00074
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 451 HLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFI 509
H E LE LGD+ +++ S L+ + + EG L+ + I+ N L L +L F+
Sbjct: 958 HNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1016
Score = 66 (28.3 bits), Expect = 7.4e-05, Sum P(5) = 7.4e-05
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 609 HLESLLNYSFRDPSLLVEALTHGSYML 635
HL+ L+ Y+F+D LL A+TH S+ L
Sbjct: 870 HLDKLIGYTFQDRCLLQLAMTHPSHHL 896
Score = 50 (22.7 bits), Expect = 7.4e-05, Sum P(5) = 7.4e-05
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 736 KALGDIIESLSGAIFVDSGCNKEVVFESIR--PLLEPMITPETMRLQPARELNEYC 789
K L D++ES A+++D F ++ P L+ I + P +L + C
Sbjct: 1209 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWN-DPKSQLQQCC 1263
Score = 41 (19.5 bits), Expect = 7.4e-05, Sum P(5) = 7.4e-05
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 214 DHNLDKLNEILKGLWLR 230
D N ++ E+LK +W+R
Sbjct: 390 DKNEEEEEELLKPVWIR 406
Score = 38 (18.4 bits), Expect = 7.4e-05, Sum P(5) = 7.4e-05
Identities = 6/10 (60%), Positives = 6/10 (60%)
Query: 279 QTKSGPLCTC 288
Q GPLC C
Sbjct: 521 QMNDGPLCKC 530
Score = 38 (18.4 bits), Expect = 0.00074, Sum P(6) = 0.00074
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 333 YEERYGIQLCFDQELL-LN-GRRIFHAQNYLSKC--RQEK 368
+++R +QL LN G HA+N LS C RQ K
Sbjct: 879 FQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPK 918
>MGI|MGI:1261425 [details] [associations]
symbol:Drosha "drosha, ribonuclease type III" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004521 "endoribonuclease activity" evidence=IDA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0010468 "regulation
of gene expression" evidence=IMP] [GO:0010586 "miRNA metabolic
process" evidence=IMP] [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IDA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 MGI:MGI:1261425 GO:GO:0005730 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0042254 GO:GO:0003725 GO:GO:0010586
GO:GO:0031054 GO:GO:0004521 GO:GO:0016075 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 KO:K03685
HSSP:O67082 CTD:29102 HOGENOM:HOG000122291 OMA:SGKEKNY
OrthoDB:EOG4VQ9NG ChiTaRS:DROSHA EMBL:AK144147 EMBL:AK148640
EMBL:BC088999 IPI:IPI00336345 RefSeq:NP_001123621.1
RefSeq:NP_081075.3 UniGene:Mm.293142 ProteinModelPortal:Q5HZJ0
SMR:Q5HZJ0 STRING:Q5HZJ0 PhosphoSite:Q5HZJ0 PRIDE:Q5HZJ0
Ensembl:ENSMUST00000090292 Ensembl:ENSMUST00000169061 GeneID:14000
KEGG:mmu:14000 UCSC:uc007via.2 InParanoid:Q5HZJ0 NextBio:284892
Bgee:Q5HZJ0 Genevestigator:Q5HZJ0 Uniprot:Q5HZJ0
Length = 1373
Score = 122 (48.0 bits), Expect = 9.4e-05, Sum P(4) = 9.4e-05
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 643 QRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHA 702
+RLEFLGDAV+++L +V+LY +P+L G L R+A V N A+ + K L + +L+A
Sbjct: 965 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYA 1024
Score = 66 (28.3 bits), Expect = 9.4e-05, Sum P(4) = 9.4e-05
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 609 HLESLLNYSFRDPSLLVEALTHGSYML 635
HL+ L+ Y+F+D LL A+TH S+ L
Sbjct: 877 HLDKLIGYTFQDRCLLQLAMTHPSHHL 903
Score = 50 (22.7 bits), Expect = 9.4e-05, Sum P(4) = 9.4e-05
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 736 KALGDIIESLSGAIFVDSGCNKEVVFESIR--PLLEPMITPETMRLQPARELNEYC 789
K L D++ES A+++D F ++ P L+ I + P +L + C
Sbjct: 1214 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWN-DPKSQLQQCC 1268
Score = 38 (18.4 bits), Expect = 9.4e-05, Sum P(4) = 9.4e-05
Identities = 6/10 (60%), Positives = 6/10 (60%)
Query: 279 QTKSGPLCTC 288
Q GPLC C
Sbjct: 528 QMNDGPLCKC 537
>UNIPROTKB|E9PTR3 [details] [associations]
symbol:E9PTR3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 KO:K03685 CTD:29102 IPI:IPI00559397
RefSeq:NP_001101125.2 RefSeq:XP_003749268.1 UniGene:Rn.41113
Ensembl:ENSRNOT00000048026 GeneID:310159 KEGG:rno:310159
ArrayExpress:E9PTR3 Uniprot:E9PTR3
Length = 1373
Score = 122 (48.0 bits), Expect = 9.4e-05, Sum P(4) = 9.4e-05
Identities = 26/60 (43%), Positives = 40/60 (66%)
Query: 643 QRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHA 702
+RLEFLGDAV+++L +V+LY +P+L G L R+A V N A+ + K L + +L+A
Sbjct: 965 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYA 1024
Score = 66 (28.3 bits), Expect = 9.4e-05, Sum P(4) = 9.4e-05
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 609 HLESLLNYSFRDPSLLVEALTHGSYML 635
HL+ L+ Y+F+D LL A+TH S+ L
Sbjct: 877 HLDKLIGYTFQDRCLLQLAMTHPSHHL 903
Score = 50 (22.7 bits), Expect = 9.4e-05, Sum P(4) = 9.4e-05
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 736 KALGDIIESLSGAIFVDSGCNKEVVFESIR--PLLEPMITPETMRLQPARELNEYC 789
K L D++ES A+++D F ++ P L+ I + P +L + C
Sbjct: 1214 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWN-DPKSQLQQCC 1268
Score = 38 (18.4 bits), Expect = 9.4e-05, Sum P(4) = 9.4e-05
Identities = 6/10 (60%), Positives = 6/10 (60%)
Query: 279 QTKSGPLCTC 288
Q GPLC C
Sbjct: 528 QMNDGPLCKC 537
>ZFIN|ZDB-GENE-070209-23 [details] [associations]
symbol:rnasen "ribonuclease type III, nuclear"
species:7955 "Danio rerio" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 ZFIN:ZDB-GENE-070209-23
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 OMA:SGKEKNY
EMBL:BX571950 IPI:IPI00499713 Ensembl:ENSDART00000089017
ArrayExpress:F1QKS5 Bgee:F1QKS5 Uniprot:F1QKS5
Length = 1289
Score = 125 (49.1 bits), Expect = 0.00019, Sum P(5) = 0.00019
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 643 QRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHA 702
+RLEFLGDAV+++L +V+LY+ +P+L G L R+A V N A+ + K L + +L+A
Sbjct: 886 ERLEFLGDAVVEFLTSVHLYHLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYA 945
Score = 111 (44.1 bits), Expect = 0.00027, Sum P(6) = 0.00027
Identities = 48/161 (29%), Positives = 76/161 (47%)
Query: 555 VADVVEALIGAFLSTGG-ENV----GLIFLDRIGIKVDFVNVPYERQFQVQAERLVNVRH 609
+A+ EALIGA GG E G + + ++ ++N P QVQ E L + +
Sbjct: 960 MANCFEALIGAVYLEGGLEEAKDLFGRLLFNTEDMREVWLNYP-PHPLQVQ-EPLTDRQL 1017
Query: 610 LES------LLNYS------FRDPSLLVEALTHGSYMLPEIPRCY-QRLEFLGDAVLDYL 656
+ES L N+ F LL A T + + + QR+EFLGD+++ +
Sbjct: 1018 IESSPVLQKLTNFEDAIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1077
Query: 657 ITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHK 697
T YL+ +P G LT +RS+ VNN A + + G+ +
Sbjct: 1078 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE 1118
Score = 72 (30.4 bits), Expect = 0.00027, Sum P(6) = 0.00027
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 451 HLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFI 509
H E LE LGD+ +++ S L+ + + EG L+ + I+ N L L +L F+
Sbjct: 884 HNERLEFLGDAVVEFLTSVHLYHLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 942
Score = 61 (26.5 bits), Expect = 0.00019, Sum P(5) = 0.00019
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 609 HLESLLNYSFRDPSLLVEALTHGSYML 635
HL+ L+ Y F++ LL A+TH S+ L
Sbjct: 798 HLDKLIGYMFKERCLLQLAMTHPSHHL 824
Score = 49 (22.3 bits), Expect = 0.00019, Sum P(5) = 0.00019
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 736 KALGDIIESLSGAIFVDSGCNKEVVFESIR--PLLEPMITPETMRLQPARELNEYC 789
K L D++ES A+++D F ++ P L+ I + P +L + C
Sbjct: 1135 KTLADLLESFIAALYIDKDLEFVHTFMNVCFFPRLKEFILNQDWN-DPKSQLQQCC 1189
Score = 42 (19.8 bits), Expect = 0.00083, Sum P(5) = 0.00083
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 731 ETSFPKALGDIIESLSGAIFVDSG 754
E+ A+ + E+L GA++++ G
Sbjct: 953 ESDLRHAMANCFEALIGAVYLEGG 976
Score = 40 (19.1 bits), Expect = 0.00027, Sum P(6) = 0.00027
Identities = 16/40 (40%), Positives = 20/40 (50%)
Query: 333 YEERYGIQLCFDQELL-LN-GRRIFHAQNYLSKC--RQEK 368
++ER +QL LN G HA+N LS C RQ K
Sbjct: 807 FKERCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPK 846
Score = 38 (18.4 bits), Expect = 0.00019, Sum P(5) = 0.00019
Identities = 6/10 (60%), Positives = 6/10 (60%)
Query: 279 QTKSGPLCTC 288
Q GPLC C
Sbjct: 450 QMNDGPLCKC 459
Score = 38 (18.4 bits), Expect = 0.00019, Sum P(5) = 0.00019
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 110 PYDAEHPIYFPPE 122
PY +P+ +PP+
Sbjct: 130 PYPPTYPMSYPPQ 142
>WB|WBGene00009163 [details] [associations]
symbol:drsh-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0000910 "cytokinesis" evidence=IMP] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005634 GO:GO:0009792
GO:GO:0030154 GO:GO:0007052 GO:GO:0046872 Gene3D:3.30.160.20
GO:GO:0007506 GO:GO:0000910 GO:GO:0003725 GO:GO:0016075
GO:GO:0019953 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 GO:GO:0031053 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 EMBL:Z81070 HOGENOM:HOG000154167
EMBL:AF160248 PIR:T21420 RefSeq:NP_001122460.2 RefSeq:NP_492599.1
ProteinModelPortal:O01326 SMR:O01326 STRING:O01326 PaxDb:O01326
EnsemblMetazoa:F26E4.10a GeneID:172830 KEGG:cel:CELE_F26E4.10
UCSC:F26E4.10a CTD:172830 WormBase:F26E4.10a WormBase:F26E4.10b
InParanoid:O01326 OMA:RFHKSLD NextBio:877175 Uniprot:O01326
Length = 1086
Score = 110 (43.8 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 27/94 (28%), Positives = 52/94 (55%)
Query: 610 LESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY-QRLEFLGDAVLDYLITVYLYNKYPTL 668
LE L F + LL +A T + ++ + + QRLE+LGD+VL +++ +LY ++P
Sbjct: 836 LEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRFPYH 895
Query: 669 SPGDLTDMRSASVNNDCYALSSVKHGLHKHILHA 702
G ++ +R++ V+N A+ G + ++ A
Sbjct: 896 HEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKA 929
Score = 70 (29.7 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 451 HLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKL 499
H E LE LGD+ ++ S L+ +H EG L+ + ++ N L L
Sbjct: 689 HNERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATL 737
Score = 47 (21.6 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 736 KALGDIIESLSGAIFVDSGCNKEVVFESIR--PLLEPMITPETMRLQPARELNEYC 789
K D++E+ GA++VD G F I P L+ I E L ++C
Sbjct: 939 KDKADLVEAFIGALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWN-DAKSHLQQWC 993
>UNIPROTKB|O01326 [details] [associations]
symbol:drsh-1 "Ribonuclease 3" species:6239 "Caenorhabditis
elegans" [GO:0005634 "nucleus" evidence=IC] [GO:0031053 "primary
miRNA processing" evidence=IMP] [GO:0019953 "sexual reproduction"
evidence=IMP] [GO:0004525 "ribonuclease III activity" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005634 GO:GO:0009792 GO:GO:0030154 GO:GO:0007052
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0007506 GO:GO:0000910
GO:GO:0003725 GO:GO:0016075 GO:GO:0019953 GO:GO:0006364
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
GO:GO:0031053 PANTHER:PTHR11207 GeneTree:ENSGT00690000102147
EMBL:Z81070 HOGENOM:HOG000154167 EMBL:AF160248 PIR:T21420
RefSeq:NP_001122460.2 RefSeq:NP_492599.1 ProteinModelPortal:O01326
SMR:O01326 STRING:O01326 PaxDb:O01326 EnsemblMetazoa:F26E4.10a
GeneID:172830 KEGG:cel:CELE_F26E4.10 UCSC:F26E4.10a CTD:172830
WormBase:F26E4.10a WormBase:F26E4.10b InParanoid:O01326 OMA:RFHKSLD
NextBio:877175 Uniprot:O01326
Length = 1086
Score = 110 (43.8 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 27/94 (28%), Positives = 52/94 (55%)
Query: 610 LESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY-QRLEFLGDAVLDYLITVYLYNKYPTL 668
LE L F + LL +A T + ++ + + QRLE+LGD+VL +++ +LY ++P
Sbjct: 836 LEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRFPYH 895
Query: 669 SPGDLTDMRSASVNNDCYALSSVKHGLHKHILHA 702
G ++ +R++ V+N A+ G + ++ A
Sbjct: 896 HEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKA 929
Score = 70 (29.7 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 451 HLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKL 499
H E LE LGD+ ++ S L+ +H EG L+ + ++ N L L
Sbjct: 689 HNERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATL 737
Score = 47 (21.6 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 736 KALGDIIESLSGAIFVDSGCNKEVVFESIR--PLLEPMITPETMRLQPARELNEYC 789
K D++E+ GA++VD G F I P L+ I E L ++C
Sbjct: 939 KDKADLVEAFIGALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWN-DAKSHLQQWC 993
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.137 0.411 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 852 840 0.00081 122 3 11 22 0.37 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 60
No. of states in DFA: 620 (66 KB)
Total size of DFA: 436 KB (2208 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 69.66u 0.11s 69.77t Elapsed: 00:00:03
Total cpu time: 69.68u 0.11s 69.79t Elapsed: 00:00:03
Start: Fri May 10 15:44:17 2013 End: Fri May 10 15:44:20 2013