BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003062
(852 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
Dicer
Length = 265
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/257 (39%), Positives = 140/257 (54%), Gaps = 28/257 (10%)
Query: 610 LESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLS 669
E +NY F++ + L++A TH SY I YQRLEFLGDA+LDYLIT +LY S
Sbjct: 18 FEKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAILDYLITKHLYEDPRQHS 77
Query: 670 PGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLEST--FG 727
PG LTD+RSA VNN +A +VK+ HK+ S EL+ +D F + LE G
Sbjct: 78 PGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFH----VIDDFVKFQLEKNEMQG 133
Query: 728 WESE-------------TSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITP 774
+SE PKA+GDI ESL+GAI++DSG + EVV++ P+++P+I
Sbjct: 134 MDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEK 193
Query: 775 ETMRL--QPARELNEYCQKHHFSMKKTVAPRI-NGKAAVTVEVHANGTLFKHTHADADKE 831
+ + P REL E + + K + A R +GK VTVEV G K
Sbjct: 194 FSANVPRSPVRELLEMEPE---TAKFSPAERTYDGKVRVTVEVVGKG---KFKGVGRSYR 247
Query: 832 TAKKVASKEVLKSLKAS 848
AK A++ L+SLKA+
Sbjct: 248 IAKSAAARRALRSLKAN 264
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/132 (18%), Positives = 54/132 (40%), Gaps = 8/132 (6%)
Query: 453 ESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTE 512
+ LE LGD+ L Y ++ L++ + H G+L+ + +++N L + + +
Sbjct: 51 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKA- 109
Query: 513 PFDPKMWMIPGD------NSGSYELNDHSLFNERKIYVTGRKKVKSKTVADVVEALIGAF 566
P+++ + D + D L + K + D+ E+L GA
Sbjct: 110 -VSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 168
Query: 567 LSTGGENVGLIF 578
G ++ +++
Sbjct: 169 YMDSGMSLEVVW 180
>pdb|3C4B|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
Dicer
Length = 265
Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 102/257 (39%), Positives = 136/257 (52%), Gaps = 28/257 (10%)
Query: 610 LESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLS 669
E +NY F++ + L++A TH SY I YQRLEFLGDA+LDYLIT +LY S
Sbjct: 18 FEKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAILDYLITKHLYEDPRQHS 77
Query: 670 PGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLEST--FG 727
PG LTD+RSA VNN +A +VK+ HK+ S EL+ +D F + LE G
Sbjct: 78 PGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFH----VIDDFVKFQLEKNEXQG 133
Query: 728 WESE-------------TSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMITP 774
+SE PKA GDI ESL+GAI+ DSG + EVV++ P +P+I
Sbjct: 134 XDSELRRSEEDEEKEEDIEVPKAXGDIFESLAGAIYXDSGXSLEVVWQVYYPXXQPLIEK 193
Query: 775 ETMRL--QPARELNEYCQKHHFSMKKTVAPRI-NGKAAVTVEVHANGTLFKHTHADADKE 831
+ + P REL E + + K + A R +GK VTVEV G K
Sbjct: 194 FSANVPRSPVRELLEXEPE---TAKFSPAERTYDGKVRVTVEVVGKG---KFKGVGRSYR 247
Query: 832 TAKKVASKEVLKSLKAS 848
AK A++ L+SLKA+
Sbjct: 248 IAKSAAARRALRSLKAN 264
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/132 (18%), Positives = 53/132 (40%), Gaps = 8/132 (6%)
Query: 453 ESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTE 512
+ LE LGD+ L Y ++ L++ + H G+L+ + +++N L + + +
Sbjct: 51 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKA- 109
Query: 513 PFDPKMWMIPGD------NSGSYELNDHSLFNERKIYVTGRKKVKSKTVADVVEALIGAF 566
P+++ + D + D L + K D+ E+L GA
Sbjct: 110 -VSPELFHVIDDFVKFQLEKNEXQGXDSELRRSEEDEEKEEDIEVPKAXGDIFESLAGAI 168
Query: 567 LSTGGENVGLIF 578
G ++ +++
Sbjct: 169 YXDSGXSLEVVW 180
>pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
Human Dicer
pdb|2EB1|B Chain B, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
Human Dicer
pdb|2EB1|C Chain C, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
Human Dicer
Length = 200
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 105/179 (58%), Gaps = 19/179 (10%)
Query: 609 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTL 668
+ E +NY F++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 10 NFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 69
Query: 669 SPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLEST--F 726
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ +D F + LE
Sbjct: 70 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFH----VIDDFVQFQLEKNEMQ 125
Query: 727 GWESE-------------TSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMI 772
G +SE PKA+GDI ESL+GAI++DSG + E V++ P++ P+I
Sbjct: 126 GMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLI 184
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/132 (18%), Positives = 53/132 (40%), Gaps = 8/132 (6%)
Query: 453 ESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTE 512
+ LE LGD+ L Y ++ L++ + H G+L+ + +++N L + + +
Sbjct: 44 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKA- 102
Query: 513 PFDPKMWMIPGD------NSGSYELNDHSLFNERKIYVTGRKKVKSKTVADVVEALIGAF 566
P+++ + D + D L + K + D+ E+L GA
Sbjct: 103 -VSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 161
Query: 567 LSTGGENVGLIF 578
G ++ ++
Sbjct: 162 YMDSGMSLETVW 173
>pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
pdb|3N3W|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
Length = 248
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 81/157 (51%), Gaps = 28/157 (17%)
Query: 600 QAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY--QRLEFLGDAVLDYLI 657
Q+ + N+ LE L Y F+D +LL+ ALTH S+ + Y +RLEFLGDAVLD ++
Sbjct: 21 QSNAMKNIEKLEQSLTYEFKDKNLLIHALTHKSF-----KKSYNNERLEFLGDAVLDLVV 75
Query: 658 TVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSF 717
YL++K+ + GDL+ +R+A VN +A + L IL + E
Sbjct: 76 GEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAE------------ 123
Query: 718 ERLSLESTFGWESETSFPKALGDIIESLSGAIFVDSG 754
E+ G E P L D +E++ GAI +++G
Sbjct: 124 -----ENNGGKEK----PSILSDALEAIIGAIHLEAG 151
Score = 37.4 bits (85), Expect = 0.035, Method: Composition-based stats.
Identities = 40/170 (23%), Positives = 70/170 (41%), Gaps = 39/170 (22%)
Query: 437 VLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAAL 496
++ A+T K ++ ++ E LE LGD+ L + LF + EG LS + +++ +
Sbjct: 45 LIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSF 104
Query: 497 CKLGCDHKLPGFIRTEPFDPKMWMIPGDNSGSYELNDHSLFNERKIYVTGRKKVKSKTVA 556
K+ L FI + + +N+G E K ++
Sbjct: 105 AKIANSLNLGDFI--------LMSVAEENNGGKE--------------------KPSILS 136
Query: 557 DVVEALIGAF-LSTGGENVGLIFLDRIGIKVDFVNVPYERQFQVQAERLV 605
D +EA+IGA L G E F I +++ N P Q+ A+ L+
Sbjct: 137 DALEAIIGAIHLEAGFE-----FAKTIALRLIEKNFP-----QIDAKILI 176
>pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer
Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
From Campylobacter Jejuni
pdb|3O2R|C Chain C, Structural Flexibility In Region Involved In Dimer
Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
From Campylobacter Jejuni
Length = 170
Score = 78.6 bits (192), Expect = 2e-14, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 81/157 (51%), Gaps = 28/157 (17%)
Query: 600 QAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY--QRLEFLGDAVLDYLI 657
Q+ + N+ LE L Y F+D +LL+ ALTH S+ + Y +RLEFLGDAVLD ++
Sbjct: 21 QSNAMKNIEKLEQSLTYEFKDKNLLIHALTHKSF-----KKSYNNERLEFLGDAVLDLVV 75
Query: 658 TVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSF 717
YL++K+ + GDL+ +R+A VN +A + L IL + E
Sbjct: 76 GEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAE------------ 123
Query: 718 ERLSLESTFGWESETSFPKALGDIIESLSGAIFVDSG 754
E+ G E P L D +E++ GAI +++G
Sbjct: 124 -----ENNGGKEK----PSILSDALEAIIGAIHLEAG 151
Score = 37.0 bits (84), Expect = 0.050, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 28/129 (21%)
Query: 437 VLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAAL 496
++ A+T K ++ ++ E LE LGD+ L + LF + EG LS + +++ +
Sbjct: 45 LIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSF 104
Query: 497 CKLGCDHKLPGFIRTEPFDPKMWMIPGDNSGSYELNDHSLFNERKIYVTGRKKVKSKTVA 556
K+ L FI + + +N+G E K ++
Sbjct: 105 AKIANSLNLGDFI--------LMSVAEENNGGKE--------------------KPSILS 136
Query: 557 DVVEALIGA 565
D +EA+IGA
Sbjct: 137 DALEAIIGA 145
>pdb|3O2R|B Chain B, Structural Flexibility In Region Involved In Dimer
Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
From Campylobacter Jejuni
pdb|3O2R|D Chain D, Structural Flexibility In Region Involved In Dimer
Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
From Campylobacter Jejuni
Length = 144
Score = 76.3 bits (186), Expect = 6e-14, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 78/151 (51%), Gaps = 27/151 (17%)
Query: 606 NVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY--QRLEFLGDAVLDYLITVYLYN 663
N+ LE L Y F+D +LL+ ALTH S+ + Y +RLEFLGDAVLD ++ YL++
Sbjct: 1 NIEKLEQSLTYEFKDKNLLIHALTHKSFX----KKSYNNERLEFLGDAVLDLVVGEYLFH 56
Query: 664 KYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLE 723
K+ + GDL+ +R+A VN +A + L IL + E E
Sbjct: 57 KFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAE-----------------E 99
Query: 724 STFGWESETSFPKALGDIIESLSGAIFVDSG 754
+ G E P L D +E++ GAI +++G
Sbjct: 100 NNGGKEK----PSILSDALEAIIGAIHLEAG 126
>pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
pdb|1O0W|B Chain B, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
Length = 252
Score = 70.1 bits (170), Expect = 5e-12, Method: Composition-based stats.
Identities = 71/259 (27%), Positives = 111/259 (42%), Gaps = 39/259 (15%)
Query: 600 QAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIP------RCYQRLEFLGDAVL 653
++ER + V + +F++ LL AL H SY + ++LEFLGDAVL
Sbjct: 15 ESERKI-VEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVL 73
Query: 654 DYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINIT 713
+ + LY KYP GDL ++SA+ + + A+ S K L K + E
Sbjct: 74 ELFVCEILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGE-------- 125
Query: 714 VDSFERLSLESTFGWESETSFPKALGDIIESLSGAIFVDSGCN--KEVVFESIRPLLEPM 771
E T G + ++ L D E+L AI++D G KE+ + +E +
Sbjct: 126 ---------EKTGGRDRDS----ILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIEKI 172
Query: 772 ITPETMRLQPARELNEYCQKHHFSMKKTVAPRI---NGKAAVTVEVHANGTLFK----HT 824
+ E M L E Q H + + R +G VEV NG T
Sbjct: 173 MKGE-MLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRT 231
Query: 825 HADADKETAKKVASKEVLK 843
+A+KE A ++A +++LK
Sbjct: 232 KKEAEKEAA-RIAYEKLLK 249
>pdb|1JFZ|A Chain A, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
pdb|1JFZ|B Chain B, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
pdb|1JFZ|C Chain C, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
pdb|1JFZ|D Chain D, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
pdb|1RC5|A Chain A, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.30
Angstrom Resolution
pdb|1RC5|B Chain B, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.30
Angstrom Resolution
pdb|1RC5|C Chain C, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.30
Angstrom Resolution
pdb|1RC5|D Chain D, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.30
Angstrom Resolution
Length = 154
Score = 63.2 bits (152), Expect = 7e-10, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 30/148 (20%)
Query: 607 VRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYP 666
+ LE L Y+F+D SLL +ALTH SY E Y+ LEFLGDA++++ I L P
Sbjct: 5 LEQLEKKLGYTFKDKSLLEKALTHVSYSKKE---HYETLEFLGDALVNFFIVDLLVQYSP 61
Query: 667 TLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTF 726
G L+ +++ ++ + + L + K LHK I +R + T
Sbjct: 62 NKREGFLSPLKAYLISEEFFNLLAQKLELHKFI----------------RIKRGKINETI 105
Query: 727 GWESETSFPKALGDIIESLSGAIFVDSG 754
+GD+ E+L A+++DSG
Sbjct: 106 -----------IGDVFEALWAAVYIDSG 122
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 34/74 (45%)
Query: 439 EAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCK 498
+A+T + H E+LE LGD+ + + L + N EG LS K +IS
Sbjct: 24 KALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNL 83
Query: 499 LGCDHKLPGFIRTE 512
L +L FIR +
Sbjct: 84 LAQKLELHKFIRIK 97
>pdb|1I4S|A Chain A, Crystal Structure Of Rnase Iii Endonuclease Domain From
Aquifex Aeolicus At 2.15 Angstrom Resolution
pdb|1I4S|B Chain B, Crystal Structure Of Rnase Iii Endonuclease Domain From
Aquifex Aeolicus At 2.15 Angstrom Resolution
Length = 147
Score = 63.2 bits (152), Expect = 7e-10, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 30/148 (20%)
Query: 607 VRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYP 666
+ LE L Y+F+D SLL +ALTH SY E Y+ LEFLGDA++++ I L P
Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSKKE---HYETLEFLGDALVNFFIVDLLVQYSP 60
Query: 667 TLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTF 726
G L+ +++ ++ + + L + K LHK I +R + T
Sbjct: 61 NKREGFLSPLKAYLISEEFFNLLAQKLELHKFI----------------RIKRGKINETI 104
Query: 727 GWESETSFPKALGDIIESLSGAIFVDSG 754
+GD+ E+L A+++DSG
Sbjct: 105 -----------IGDVFEALWAAVYIDSG 121
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 34/74 (45%)
Query: 439 EAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCK 498
+A+T + H E+LE LGD+ + + L + N EG LS K +IS
Sbjct: 23 KALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNL 82
Query: 499 LGCDHKLPGFIRTE 512
L +L FIR +
Sbjct: 83 LAQKLELHKFIRIK 96
>pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double-Stranded Rna At 2.5-Angstrom
Resolution
pdb|1YYK|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double-Stranded Rna At 2.5-Angstrom
Resolution
pdb|1YYW|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|1YYW|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|1YYW|C Chain C, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|1YYW|D Chain D, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|2NUE|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.9-Angstrom Resolution
pdb|2NUE|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.9-Angstrom Resolution
pdb|2NUF|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.5-Angstrom Resolution
pdb|2NUF|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.5-Angstrom Resolution
pdb|2NUG|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 1.7-Angstrom Resolution
pdb|2NUG|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 1.7-Angstrom Resolution
Length = 221
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 63/251 (25%), Positives = 111/251 (44%), Gaps = 43/251 (17%)
Query: 607 VRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYP 666
+ LE L Y+F+D SLL +ALTH SY E Y+ LEFLGDA++++ I L P
Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSKKE---HYETLEFLGDALVNFFIVDLLVQYSP 60
Query: 667 TLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTF 726
G L+ +++ ++ + + L + K LHK I +R + T
Sbjct: 61 NKREGFLSPLKAYLISEEFFNLLAQKLELHKFI----------------RIKRGKINETI 104
Query: 727 GWESETSFPKALGDIIESLSGAIFVDSGCN----KEVVFESIRPLLEPMITPETMRLQPA 782
+GD+ E+L A+++DSG + +E+ ++ + + I ++
Sbjct: 105 -----------IGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYK 153
Query: 783 RELNEYCQKH-----HFSMKKTVAPRINGKAAVTVEVHANGTLFKHTHADADKETAKKVA 837
L E QK + + P K V ++ TL + K+ A++ A
Sbjct: 154 TILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGE----GKSKKEAEQRA 209
Query: 838 SKEVLKSLKAS 848
++E++K L+ S
Sbjct: 210 AEELIKLLEES 220
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 34/74 (45%)
Query: 439 EAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCK 498
+A+T + H E+LE LGD+ + + L + N EG LS K +IS
Sbjct: 23 KALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNL 82
Query: 499 LGCDHKLPGFIRTE 512
L +L FIR +
Sbjct: 83 LAQKLELHKFIRIK 96
>pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
Aeolicus Complexed With Double Stranded Rna At 2.1-
Angstrom Resolution
pdb|1YZ9|B Chain B, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
Aeolicus Complexed With Double Stranded Rna At 2.1-
Angstrom Resolution
Length = 221
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 62/251 (24%), Positives = 111/251 (44%), Gaps = 43/251 (17%)
Query: 607 VRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYP 666
+ LE L Y+F+D SLL +ALTH SY E Y+ LEFLGDA++++ I L P
Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSKKE---HYETLEFLGDALVNFFIVDLLVQYSP 60
Query: 667 TLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTF 726
G L+ +++ ++ + + L + K LHK I +R + T
Sbjct: 61 NKREGFLSPLKAYLISEEFFNLLAQKLELHKFI----------------RIKRGKINETI 104
Query: 727 GWESETSFPKALGDIIESLSGAIFVDSGCN----KEVVFESIRPLLEPMITPETMRLQPA 782
+GD+ ++L A+++DSG + +E+ ++ + + I ++
Sbjct: 105 -----------IGDVFQALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYK 153
Query: 783 RELNEYCQKH-----HFSMKKTVAPRINGKAAVTVEVHANGTLFKHTHADADKETAKKVA 837
L E QK + + P K V ++ TL + K+ A++ A
Sbjct: 154 TILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGE----GKSKKEAEQRA 209
Query: 838 SKEVLKSLKAS 848
++E++K L+ S
Sbjct: 210 AEELIKLLEES 220
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 34/74 (45%)
Query: 439 EAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCK 498
+A+T + H E+LE LGD+ + + L + N EG LS K +IS
Sbjct: 23 KALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNL 82
Query: 499 LGCDHKLPGFIRTE 512
L +L FIR +
Sbjct: 83 LAQKLELHKFIRIK 96
>pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Double-stranded Rna At 2.9-
Angstrom Resolution
pdb|1YYO|B Chain B, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Double-stranded Rna At 2.9-
Angstrom Resolution
Length = 221
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 62/251 (24%), Positives = 111/251 (44%), Gaps = 43/251 (17%)
Query: 607 VRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYP 666
+ LE L Y+F+D SLL +ALTH SY E Y+ LEFLGDA++++ I L P
Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSKKE---HYETLEFLGDALVNFFIVDLLVQYSP 60
Query: 667 TLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTF 726
G L+ +++ ++ + + L + K LHK I +R + T
Sbjct: 61 NKREGFLSPLKAYLISEEFFNLLAQKLELHKFI----------------RIKRGKINETI 104
Query: 727 GWESETSFPKALGDIIESLSGAIFVDSGCN----KEVVFESIRPLLEPMITPETMRLQPA 782
+GD+ ++L A+++DSG + +E+ ++ + + I ++
Sbjct: 105 -----------IGDVFKALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYK 153
Query: 783 RELNEYCQKH-----HFSMKKTVAPRINGKAAVTVEVHANGTLFKHTHADADKETAKKVA 837
L E QK + + P K V ++ TL + K+ A++ A
Sbjct: 154 TILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGE----GKSKKEAEQRA 209
Query: 838 SKEVLKSLKAS 848
++E++K L+ S
Sbjct: 210 AEELIKLLEES 220
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 34/74 (45%)
Query: 439 EAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCK 498
+A+T + H E+LE LGD+ + + L + N EG LS K +IS
Sbjct: 23 KALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNL 82
Query: 499 LGCDHKLPGFIRTE 512
L +L FIR +
Sbjct: 83 LAQKLELHKFIRIK 96
>pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Ds-Rna At 2.15 Angstrom
Resolution
Length = 220
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 62/251 (24%), Positives = 111/251 (44%), Gaps = 43/251 (17%)
Query: 607 VRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYP 666
+ LE L Y+F+D SLL +ALTH SY E Y+ LEFLGDA++++ I L P
Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSKKE---HYETLEFLGDALVNFFIVDLLVQYSP 60
Query: 667 TLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTF 726
G L+ +++ ++ + + L + K LHK I +R + T
Sbjct: 61 NKREGFLSPLKAYLISEEFFNLLAQKLELHKFI----------------RIKRGKINETI 104
Query: 727 GWESETSFPKALGDIIESLSGAIFVDSGCN----KEVVFESIRPLLEPMITPETMRLQPA 782
+GD+ ++L A+++DSG + +E+ ++ + + I ++
Sbjct: 105 -----------IGDVFKALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYK 153
Query: 783 RELNEYCQKH-----HFSMKKTVAPRINGKAAVTVEVHANGTLFKHTHADADKETAKKVA 837
L E QK + + P K V ++ TL + K+ A++ A
Sbjct: 154 TILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGE----GKSKKEAEQRA 209
Query: 838 SKEVLKSLKAS 848
++E++K L+ S
Sbjct: 210 AEELIKLLEES 220
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 34/74 (45%)
Query: 439 EAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCK 498
+A+T + H E+LE LGD+ + + L + N EG LS K +IS
Sbjct: 23 KALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNL 82
Query: 499 LGCDHKLPGFIRTE 512
L +L FIR +
Sbjct: 83 LAQKLELHKFIRIK 96
>pdb|2A11|A Chain A, Crystal Structure Of Nuclease Domain Of Ribonuclase Iii
From Mycobacterium Tuberculosis
Length = 242
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 54/158 (34%), Positives = 74/158 (46%), Gaps = 29/158 (18%)
Query: 623 LLVEALTHGSYMLPE--IPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSAS 680
LL ALTH SY +P +RLEFLGDAVL IT L++++P S GDL +R++
Sbjct: 22 LLSLALTHRSYAYENGGLP-TNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASV 80
Query: 681 VNNDCYALSSVK---HGLHKHILHASQELYKWINITVDSFERLSLESTFGWESETSFPKA 737
VN A + + GL H+L E+ G ++S
Sbjct: 81 VNTQALADVARRLCAEGLGVHVLLGRG------------------EANTGGADKSSI--- 119
Query: 738 LGDIIESLSGAIFVDSGCNK--EVVFESIRPLLEPMIT 773
L D +ESL GAI++ G K EV+ PLL+ T
Sbjct: 120 LADGMESLLGAIYLQHGMEKAREVILRLFGPLLDAAPT 157
>pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n)
Complexed With Product Of Double-stranded Rna Processing
pdb|2EZ6|B Chain B, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n)
Complexed With Product Of Double-stranded Rna Processing
Length = 221
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 62/251 (24%), Positives = 111/251 (44%), Gaps = 43/251 (17%)
Query: 607 VRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYP 666
+ LE L Y+F+D SLL +ALTH SY E Y+ LEFLG+A++++ I L P
Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSYSKKE---HYETLEFLGNALVNFFIVDLLVQYSP 60
Query: 667 TLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTF 726
G L+ +++ ++ + + L + K LHK I +R + T
Sbjct: 61 NKREGFLSPLKAYLISEEFFNLLAQKLELHKFI----------------RIKRGKINETI 104
Query: 727 GWESETSFPKALGDIIESLSGAIFVDSGCN----KEVVFESIRPLLEPMITPETMRLQPA 782
+GD+ E+L A+++DSG + +E+ ++ + + I ++
Sbjct: 105 -----------IGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYK 153
Query: 783 RELNEYCQKH-----HFSMKKTVAPRINGKAAVTVEVHANGTLFKHTHADADKETAKKVA 837
L E QK + + P K V ++ TL + K+ A++ A
Sbjct: 154 TILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGE----GKSKKEAEQRA 209
Query: 838 SKEVLKSLKAS 848
++E++K L+ S
Sbjct: 210 AEELIKLLEES 220
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 34/74 (45%)
Query: 439 EAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCK 498
+A+T + H E+LE LG++ + + L + N EG LS K +IS
Sbjct: 23 KALTHVSYSKKEHYETLEFLGNALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNL 82
Query: 499 LGCDHKLPGFIRTE 512
L +L FIR +
Sbjct: 83 LAQKLELHKFIRIK 96
>pdb|2KOU|A Chain A, Dicer Like Protein
Length = 102
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 31 RYFKPTPKFDIN--KEMG--ICTLYLPNNCPIQTVIAQ--GNIKTLKQTACLEACKKLHQ 84
+F+P P+F E G IC + LP N PI + + + + K+ ACL+A +LH
Sbjct: 21 EFFQPKPEFQFKPVDEFGGTICRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHN 80
Query: 85 IGALTDNLLPDVVVEEHD 102
+G L D LLPD E D
Sbjct: 81 LGVLNDFLLPDSKDEIED 98
>pdb|2FFL|A Chain A, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2FFL|B Chain B, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2FFL|C Chain C, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2FFL|D Chain D, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2QVW|A Chain A, Structure Of Giardia Dicer Refined Against Twinned Data
pdb|2QVW|B Chain B, Structure Of Giardia Dicer Refined Against Twinned Data
pdb|2QVW|C Chain C, Structure Of Giardia Dicer Refined Against Twinned Data
pdb|2QVW|D Chain D, Structure Of Giardia Dicer Refined Against Twinned Data
Length = 756
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 25/138 (18%)
Query: 639 PRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKH 698
P YQ+LE LGDA L + ++L+ +PTL+ G LT MR ++ N SV L K
Sbjct: 644 PHVYQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETN------SVLGRLTKR 697
Query: 699 ILHASQELYKWINITVDSFERLSLESTFGWESETSFPKALGDIIESLSGAIFVDSGCNKE 758
E + ++S ++ +S K GD E++ AI + C +E
Sbjct: 698 FPSVVSE------VIIESHPKIQPDS-----------KVYGDTFEAILAAILL--ACGEE 738
Query: 759 VVFESIRPLLEPMITPET 776
+R + P + +
Sbjct: 739 AAGAFVREHVLPQVVADA 756
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 642 YQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDC 685
+QRLE LGDAVL +++T L +P S G L +++ V N+
Sbjct: 334 FQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEA 377
>pdb|3RV1|A Chain A, Crystal Structure Of The N-Terminal And Rnase Iii Domains
Of K. Polysporus Dcr1 E224q Mutant
pdb|3RV1|B Chain B, Crystal Structure Of The N-Terminal And Rnase Iii Domains
Of K. Polysporus Dcr1 E224q Mutant
Length = 246
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 643 QRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHI 699
+RLEFLGD+ L L++ +Y ++P+ + G L+ M+ + VNN+ S K K +
Sbjct: 130 ERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRL 186
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 453 ESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAAL----CKLGCDHKLPGF 508
E LE LGDS+L S ++ + + +EG+LS K+ I++N L KL +L G
Sbjct: 130 ERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGN 189
Query: 509 IRT 511
I T
Sbjct: 190 IAT 192
>pdb|3RV0|A Chain A, Crystal Structure Of K. Polysporus Dcr1 Without The
C-Terminal Dsrbd
pdb|3RV0|B Chain B, Crystal Structure Of K. Polysporus Dcr1 Without The
C-Terminal Dsrbd
pdb|3RV0|C Chain C, Crystal Structure Of K. Polysporus Dcr1 Without The
C-Terminal Dsrbd
pdb|3RV0|D Chain D, Crystal Structure Of K. Polysporus Dcr1 Without The
C-Terminal Dsrbd
Length = 341
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 643 QRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHI 699
+RLEFLGD+ L L++ +Y ++P+ + G L+ M+ + VNN+ S K K +
Sbjct: 130 ERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRL 186
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 453 ESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAAL----CKLGCDHKLPGF 508
E LE LGDS+L S ++ + + +EG+LS K+ I++N L KL +L G
Sbjct: 130 ERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGN 189
Query: 509 IRT 511
I T
Sbjct: 190 IAT 192
>pdb|3O7X|A Chain A, Crystal Structure Of Human Hili Paz Domain
pdb|3O7X|B Chain B, Crystal Structure Of Human Hili Paz Domain
pdb|3O7X|C Chain C, Crystal Structure Of Human Hili Paz Domain
pdb|3O7X|D Chain D, Crystal Structure Of Human Hili Paz Domain
Length = 140
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 286 CTCMIYNSVVCTPHSGQIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLCFDQ 345
CT ++ ++V T ++ + Y I V + FT +DG IT+ ++Y + YGI + +
Sbjct: 24 CTKLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSDGKEITFLEYYSKNYGITVKEED 83
Query: 346 ELLL 349
+ LL
Sbjct: 84 QPLL 87
>pdb|3QIR|A Chain A, Crystal Structure Of Piwil2 Paz Domain
pdb|3QIR|B Chain B, Crystal Structure Of Piwil2 Paz Domain
pdb|3QIR|C Chain C, Crystal Structure Of Piwil2 Paz Domain
pdb|3QIR|D Chain D, Crystal Structure Of Piwil2 Paz Domain
Length = 148
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 286 CTCMIYNSVVCTPHSGQIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLCFDQ 345
CT ++ ++V T ++ + Y I V + FT +DG IT+ ++Y + YGI + +
Sbjct: 24 CTKLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSDGKEITFLEYYSKNYGITVKEED 83
Query: 346 ELLLNGR 352
+ LL R
Sbjct: 84 QPLLIHR 90
>pdb|3FVC|A Chain A, Crystal Structure Of A Trimeric Variant Of The
Epstein-Barr Virus Glycoprotein B
Length = 663
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 433 PTSKVLEAITTKKCQEGFHLESLETLGDSFLKYAASQQL--FKTYQNHHEGLLSVKKDRI 490
P + V T ++ F + L + GD F ++++ Q F T +NH EGLL V KD I
Sbjct: 9 PATTVQPTATRQQTSFPFRVCELSSHGDLF-RFSSDIQCPSFGTRENHTEGLLMVFKDNI 67
Query: 491 I 491
I
Sbjct: 68 I 68
>pdb|2YAY|A Chain A, The Crystal Structure Of Leishmania Major Dutpase In
Complex With Substrate Analogue Dupnpp
pdb|2YAZ|A Chain A, The Crystal Structure Of Leishmania Major Dutpase In
Complex Dump
pdb|2YAZ|B Chain B, The Crystal Structure Of Leishmania Major Dutpase In
Complex Dump
pdb|2YAZ|D Chain D, The Crystal Structure Of Leishmania Major Dutpase In
Complex Dump
pdb|2YAZ|E Chain E, The Crystal Structure Of Leishmania Major Dutpase In
Complex Dump
pdb|2YB0|A Chain A, The Crystal Structure Of Leishmania Major Dutpase In
Complex Deoxyuridine
pdb|2YB0|B Chain B, The Crystal Structure Of Leishmania Major Dutpase In
Complex Deoxyuridine
pdb|2YB0|D Chain D, The Crystal Structure Of Leishmania Major Dutpase In
Complex Deoxyuridine
pdb|2YB0|E Chain E, The Crystal Structure Of Leishmania Major Dutpase In
Complex Deoxyuridine
Length = 271
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 16/110 (14%)
Query: 686 YALSSVKHGLHKHI---LHASQELYKW-INITVDSFERLSLESTFGWESETSFPKALGDI 741
++L+ ++ GL+ I A + L W + IT++S E L W++ + P
Sbjct: 18 HSLAELQDGLNAMIDPSWRAVRSLDNWALAITMESTELLDSYPWKWWKNLNATPDLANVR 77
Query: 742 IE-------SLSGAIFVDSGCNKEVVFESIRPLLEPMITPETMRLQPARE 784
IE SLSGA+ + S + E+ S++PL E M T PA+E
Sbjct: 78 IELVDIFHFSLSGAMQMRSTPDDEIPAASLKPLKEVMTT-----FLPAKE 122
>pdb|2CJE|A Chain A, The Crystal Structure Of A Complex Of Leishmania Major
Dutpase With Substrate Analogue Dupnhp
Length = 268
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 16/110 (14%)
Query: 686 YALSSVKHGLHKHI---LHASQELYKW-INITVDSFERLSLESTFGWESETSFPKALGDI 741
++L+ ++ GL+ I A + L W + IT++S E L W++ + P
Sbjct: 15 HSLAELQDGLNAMIDPSWRAVRSLDNWALAITMESTELLDSYPWKWWKNLNATPDLANVR 74
Query: 742 IE-------SLSGAIFVDSGCNKEVVFESIRPLLEPMITPETMRLQPARE 784
IE SLSGA+ + S + E+ S++PL E M T PA+E
Sbjct: 75 IELVDIFHFSLSGAMQMRSTPDDEIPAASLKPLKEVMTT-----FLPAKE 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,173,775
Number of Sequences: 62578
Number of extensions: 1037763
Number of successful extensions: 2035
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1969
Number of HSP's gapped (non-prelim): 55
length of query: 852
length of database: 14,973,337
effective HSP length: 107
effective length of query: 745
effective length of database: 8,277,491
effective search space: 6166730795
effective search space used: 6166730795
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)