Query 003062
Match_columns 852
No_of_seqs 391 out of 2513
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 11:55:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qvw_A GLP_546_48378_50642; di 100.0 1.9E-83 6.6E-88 760.1 34.4 532 152-775 18-755 (756)
2 3c4b_A Endoribonuclease dicer; 100.0 2.2E-43 7.5E-48 375.1 21.7 237 606-847 14-263 (265)
3 3n3w_A Ribonuclease III; nucle 100.0 1.9E-43 6.4E-48 369.3 10.4 218 603-847 24-247 (248)
4 2nug_A Ribonuclease III, RNAse 100.0 3.6E-42 1.2E-46 355.3 19.7 210 606-847 3-219 (221)
5 1o0w_A Ribonuclease III, RNAse 100.0 1.2E-41 3.9E-46 357.9 15.1 227 599-849 13-251 (252)
6 2a11_A Ribonuclease III, RNAse 100.0 5.8E-41 2E-45 351.2 6.2 218 606-849 6-233 (242)
7 3rv0_A K. polysporus DCR1; RNA 100.0 7.5E-40 2.6E-44 354.4 7.5 217 608-848 86-321 (341)
8 3o2r_A Ribonuclease III; struc 100.0 1.5E-32 5.3E-37 268.8 11.4 144 604-773 25-168 (170)
9 3rv1_A K. polysporus DCR1; RNA 100.0 4.6E-31 1.6E-35 271.4 9.1 147 608-774 86-242 (246)
10 3o2r_A Ribonuclease III; struc 99.9 6.8E-28 2.3E-32 235.9 10.1 134 416-582 29-162 (170)
11 3n3w_A Ribonuclease III; nucle 99.9 6.5E-26 2.2E-30 236.7 10.1 134 416-582 29-162 (248)
12 2nug_A Ribonuclease III, RNAse 99.9 7.8E-25 2.7E-29 225.7 12.0 128 416-582 5-134 (221)
13 3rv1_A K. polysporus DCR1; RNA 99.9 2.6E-25 9E-30 228.6 7.3 134 417-582 87-235 (246)
14 3c4b_A Endoribonuclease dicer; 99.9 1.5E-24 5.1E-29 230.1 12.2 155 416-582 16-186 (265)
15 2qvw_A GLP_546_48378_50642; di 99.9 6.9E-25 2.4E-29 260.0 4.0 165 625-848 320-498 (756)
16 1o0w_A Ribonuclease III, RNAse 99.9 2.5E-24 8.6E-29 226.0 5.9 134 416-582 22-164 (252)
17 2a11_A Ribonuclease III, RNAse 99.9 3.4E-24 1.2E-28 224.0 6.1 133 416-582 8-147 (242)
18 3rv0_A K. polysporus DCR1; RNA 99.9 1.2E-23 4E-28 227.8 8.2 133 418-582 88-235 (341)
19 2kou_A Dicer-like protein 4; A 99.8 6E-19 2E-23 156.4 7.2 67 32-99 22-95 (102)
20 1u61_A Hypothetical protein; s 99.7 1.7E-17 5.9E-22 154.5 8.9 105 449-582 9-125 (138)
21 1u61_A Hypothetical protein; s 99.7 1.8E-17 6.2E-22 154.3 7.7 107 639-769 9-127 (138)
22 2gsl_A Hypothetical protein; a 99.6 8.1E-16 2.8E-20 142.8 5.8 115 639-772 12-130 (137)
23 2gsl_A Hypothetical protein; a 99.6 6.8E-16 2.3E-20 143.4 5.2 105 449-583 12-126 (137)
24 3o7v_X PIWI-like protein 1; PI 99.6 1.7E-15 5.7E-20 139.3 5.3 97 287-395 25-121 (124)
25 3qir_A PIWI-like protein 2; st 99.5 2.3E-14 7.8E-19 136.1 6.4 98 287-395 25-122 (148)
26 2xfm_A MIWI, PIWI-like protein 99.5 4.5E-14 1.5E-18 135.4 6.3 99 287-397 26-124 (150)
27 3adl_A RISC-loading complex su 99.1 4.1E-10 1.4E-14 97.1 10.1 72 777-850 13-87 (88)
28 1di2_A XLRBPA, double stranded 99.0 6.4E-10 2.2E-14 91.7 9.3 64 781-846 2-68 (69)
29 1x48_A Interferon-induced, dou 99.0 6.6E-10 2.3E-14 95.9 9.8 71 779-850 6-77 (88)
30 3adj_A F21M12.9 protein; HYL1, 99.0 6.2E-10 2.1E-14 93.6 8.7 68 779-847 4-74 (76)
31 2cpn_A TAR RNA-binding protein 99.0 1E-09 3.5E-14 94.9 10.1 70 778-849 15-87 (89)
32 3llh_A RISC-loading complex su 99.0 1E-09 3.5E-14 95.3 9.5 70 777-848 12-83 (90)
33 3adg_A F21M12.9 protein; HYL1, 99.0 1.1E-09 3.9E-14 91.3 9.1 67 779-846 3-72 (73)
34 1x47_A DGCR8 protein; structur 99.0 1.2E-09 4E-14 96.3 9.7 70 778-848 15-85 (98)
35 2dix_A Interferon-inducible do 99.0 1.6E-09 5.5E-14 92.7 9.5 69 778-848 7-77 (84)
36 1x49_A Interferon-induced, dou 99.0 8.7E-10 3E-14 96.9 7.7 71 778-849 13-85 (97)
37 1uhz_A Staufen (RNA binding pr 99.0 2.5E-09 8.7E-14 92.4 10.1 68 779-848 6-76 (89)
38 2khx_A Ribonuclease 3; drosha, 99.0 9E-10 3.1E-14 94.4 6.9 69 779-848 1-77 (85)
39 1ekz_A DSRBDIII, maternal effe 98.9 7.2E-10 2.5E-14 93.2 4.5 68 778-847 6-75 (76)
40 1t4n_A Ribonuclease III; DSRBD 98.9 1.5E-09 5.1E-14 93.7 5.4 68 778-847 5-75 (94)
41 1whn_A Hypothetical protein ri 98.9 4.6E-09 1.6E-13 96.7 8.6 69 778-848 25-95 (128)
42 2l2n_A Hyponastic leave 1; DSR 98.9 6.8E-09 2.3E-13 92.3 9.2 70 778-848 16-88 (103)
43 2l33_A Interleukin enhancer-bi 98.8 1.3E-08 4.3E-13 88.0 10.0 71 778-851 13-85 (91)
44 1whq_A RNA helicase A; double- 98.8 6.4E-09 2.2E-13 91.6 7.9 68 779-848 6-76 (99)
45 1t4o_A Ribonuclease III; RNT1P 98.8 7.2E-09 2.5E-13 92.5 7.3 67 778-846 7-76 (117)
46 2b7t_A Double-stranded RNA-spe 98.7 2.9E-08 9.8E-13 82.7 8.5 66 778-846 3-70 (73)
47 2dmy_A Spermatid perinuclear R 98.7 4.5E-08 1.6E-12 86.0 9.7 67 778-847 15-83 (97)
48 1uil_A Double-stranded RNA-bin 98.7 2.7E-08 9.1E-13 89.9 8.2 68 779-848 26-100 (113)
49 2ljh_A Double-stranded RNA-spe 98.7 5.5E-08 1.9E-12 87.4 9.1 65 778-848 36-102 (114)
50 2yt4_A Protein DGCR8; DSRBD, R 98.5 2E-07 7E-12 95.6 10.4 72 778-850 21-93 (232)
51 3p1x_A Interleukin enhancer-bi 98.5 4.5E-07 1.6E-11 75.7 9.9 67 778-850 6-74 (75)
52 2b7v_A Double-stranded RNA-spe 98.5 3.2E-07 1.1E-11 75.8 8.5 65 778-848 3-69 (71)
53 1qu6_A Protein kinase PKR; dsR 98.5 1.2E-07 4.1E-12 93.6 6.3 70 778-848 12-83 (179)
54 1qu6_A Protein kinase PKR; dsR 98.3 1.3E-06 4.5E-11 86.1 8.2 71 778-850 103-175 (179)
55 1vyn_A Argonaute2; nucleic aci 98.2 7.5E-07 2.6E-11 84.4 4.8 78 288-386 35-118 (143)
56 3mj0_A Protein argonaute-2; ar 98.0 1.8E-06 6.2E-11 79.3 3.0 79 287-386 32-116 (124)
57 2l3j_A Double-stranded RNA-spe 97.8 6.4E-05 2.2E-09 77.3 9.2 64 778-847 160-225 (236)
58 2yt4_A Protein DGCR8; DSRBD, R 97.6 6.1E-05 2.1E-09 77.1 7.0 68 778-850 129-201 (232)
59 2l3j_A Double-stranded RNA-spe 97.6 0.00015 5E-09 74.6 9.6 66 779-847 4-71 (236)
60 4f3t_A Protein argonaute-2; hy 97.4 8.3E-05 2.9E-09 90.4 4.5 80 288-386 262-348 (861)
61 1u04_A Argonaute, hypothetical 95.6 0.0009 3.1E-08 79.4 -3.2 73 300-387 194-272 (771)
62 1uil_A Double-stranded RNA-bin 92.5 0.2 7E-06 44.7 6.2 73 7-91 31-106 (113)
63 2l2n_A Hyponastic leave 1; DSR 91.6 0.53 1.8E-05 41.2 7.8 42 45-90 49-93 (103)
64 1whq_A RNA helicase A; double- 91.6 0.41 1.4E-05 41.6 7.0 50 45-95 37-86 (99)
65 4f1n_A Kpago; argonaute, RNAI, 90.7 0.17 5.8E-06 62.1 4.9 77 289-386 355-460 (1046)
66 1r6z_P Chimera of maltose-bind 90.6 0.097 3.3E-06 59.9 2.6 76 289-386 416-498 (509)
67 3adg_A F21M12.9 protein; HYL1, 90.3 0.74 2.5E-05 37.4 7.0 35 45-83 35-72 (73)
68 4gl2_A Interferon-induced heli 90.2 0.11 3.8E-06 61.9 2.7 30 1-30 488-517 (699)
69 2cpn_A TAR RNA-binding protein 89.9 0.56 1.9E-05 39.9 6.1 37 45-84 49-85 (89)
70 3adl_A RISC-loading complex su 89.2 0.69 2.3E-05 39.2 6.1 37 45-84 48-84 (88)
71 1di2_A XLRBPA, double stranded 88.4 0.65 2.2E-05 37.3 5.3 36 45-83 33-68 (69)
72 2db2_A KIAA0890 protein; DSRM 88.3 1.2 4.2E-05 38.6 7.0 69 779-847 17-89 (119)
73 4a2p_A RIG-I, retinoic acid in 88.3 0.16 5.4E-06 58.5 2.0 29 2-30 478-506 (556)
74 3adj_A F21M12.9 protein; HYL1, 88.2 0.87 3E-05 37.4 6.0 37 45-83 37-73 (76)
75 2ykg_A Probable ATP-dependent 87.9 0.093 3.2E-06 62.5 -0.3 30 1-30 485-514 (696)
76 2dix_A Interferon-inducible do 87.7 0.94 3.2E-05 38.0 6.0 39 45-86 40-78 (84)
77 2b7v_A Double-stranded RNA-spe 87.4 1.1 3.9E-05 36.1 6.2 48 35-85 15-69 (71)
78 2b7t_A Double-stranded RNA-spe 87.3 0.96 3.3E-05 36.8 5.7 37 45-84 35-71 (73)
79 1uhz_A Staufen (RNA binding pr 87.3 1.1 3.7E-05 38.1 6.2 36 45-83 39-74 (89)
80 3ho1_A Argonaute; argonaute, p 87.1 0.16 5.3E-06 59.4 1.0 79 293-388 191-269 (685)
81 1x47_A DGCR8 protein; structur 86.1 1.3 4.5E-05 38.3 6.2 35 45-83 47-83 (98)
82 4a2q_A RIG-I, retinoic acid in 85.4 0.27 9.3E-06 59.6 2.0 30 1-30 718-747 (797)
83 4a2w_A RIG-I, retinoic acid in 85.2 0.25 8.5E-06 61.0 1.5 30 1-30 718-747 (936)
84 2khx_A Ribonuclease 3; drosha, 84.1 1.6 5.5E-05 36.7 5.6 37 45-83 39-75 (85)
85 3llh_A RISC-loading complex su 84.0 0.99 3.4E-05 38.4 4.3 41 45-88 46-86 (90)
86 3tbk_A RIG-I helicase domain; 83.5 0.18 6.3E-06 57.8 -0.7 29 2-30 477-505 (555)
87 3eaq_A Heat resistant RNA depe 82.8 0.61 2.1E-05 46.5 3.0 28 2-29 106-135 (212)
88 3p1x_A Interleukin enhancer-bi 81.4 2.6 8.8E-05 34.4 5.7 38 45-85 35-72 (75)
89 1t5i_A C_terminal domain of A 80.9 0.71 2.4E-05 44.3 2.5 20 2-21 106-125 (172)
90 1whn_A Hypothetical protein ri 80.6 2.5 8.6E-05 38.4 5.9 35 45-83 56-93 (128)
91 2ljh_A Double-stranded RNA-spe 80.4 1.7 5.7E-05 38.7 4.5 48 36-86 49-103 (114)
92 2l33_A Interleukin enhancer-bi 80.0 1.8 6.2E-05 36.9 4.4 37 45-84 45-81 (91)
93 1fuk_A Eukaryotic initiation f 79.4 0.68 2.3E-05 43.9 1.8 20 2-21 105-124 (165)
94 2l6m_A Protein dicer; DSRBD, h 79.0 22 0.00074 30.1 10.4 66 782-848 26-105 (121)
95 2jgn_A DBX, DDX3, ATP-dependen 78.1 1.1 3.9E-05 43.4 3.1 20 2-21 121-140 (185)
96 1ekz_A DSRBDIII, maternal effe 78.1 0.57 1.9E-05 38.5 0.7 37 45-84 39-75 (76)
97 2rb4_A ATP-dependent RNA helic 78.1 1.1 3.6E-05 43.1 2.8 20 2-21 109-134 (175)
98 2dmy_A Spermatid perinuclear R 78.0 2.3 7.8E-05 36.7 4.6 35 45-82 47-81 (97)
99 2kou_A Dicer-like protein 4; A 76.8 7.8 0.00027 33.6 7.7 66 780-848 5-81 (102)
100 2p6n_A ATP-dependent RNA helic 76.8 1.2 4.1E-05 43.5 2.8 20 2-21 129-148 (191)
101 1ztd_A Hypothetical protein PF 76.2 9.3 0.00032 32.9 7.6 80 453-580 13-96 (133)
102 3i32_A Heat resistant RNA depe 73.6 1.3 4.6E-05 46.7 2.3 28 2-29 103-132 (300)
103 1x49_A Interferon-induced, dou 72.6 13 0.00045 31.8 8.0 63 8-83 20-82 (97)
104 1s2m_A Putative ATP-dependent 71.6 1.7 5.9E-05 47.3 2.7 27 2-28 333-361 (400)
105 1xti_A Probable ATP-dependent 68.9 2.5 8.4E-05 45.8 3.2 20 2-21 325-344 (391)
106 2db2_A KIAA0890 protein; DSRM 67.9 8.3 0.00028 33.5 5.4 52 46-97 51-102 (119)
107 3fht_A ATP-dependent RNA helic 65.9 2.9 9.9E-05 45.5 3.0 19 2-20 341-365 (412)
108 2hjv_A ATP-dependent RNA helic 65.2 3.7 0.00013 38.6 3.2 20 2-21 110-129 (163)
109 2yjt_D ATP-dependent RNA helic 68.5 1.4 4.6E-05 42.1 0.0 19 2-20 105-123 (170)
110 1x48_A Interferon-induced, dou 63.5 8.6 0.00029 32.3 4.8 64 6-84 10-74 (88)
111 3pey_A ATP-dependent RNA helic 63.5 3.5 0.00012 44.5 3.0 20 2-21 318-343 (395)
112 2wv9_A Flavivirin protease NS2 63.0 3.2 0.00011 48.9 2.8 19 2-20 500-519 (673)
113 2d7d_A Uvrabc system protein B 60.4 3.9 0.00013 48.2 2.9 27 3-29 526-553 (661)
114 2i4i_A ATP-dependent RNA helic 60.1 4.2 0.00014 44.4 2.9 20 2-21 351-370 (417)
115 3eiq_A Eukaryotic initiation f 59.1 3.4 0.00012 45.0 1.9 20 2-21 355-374 (414)
116 1c4o_A DNA nucleotide excision 58.4 4.6 0.00016 47.5 3.1 26 4-29 521-547 (664)
117 3oiy_A Reverse gyrase helicase 58.3 3.7 0.00012 45.0 2.0 29 2-30 327-363 (414)
118 3htx_A HEN1; HEN1, small RNA m 58.0 13 0.00043 44.6 6.5 40 808-848 57-96 (950)
119 2v6i_A RNA helicase; membrane, 57.9 3.1 0.00011 46.2 1.4 27 2-28 258-286 (431)
120 1t4n_A Ribonuclease III; DSRBD 55.9 15 0.0005 31.4 4.9 38 45-83 37-74 (94)
121 1oyw_A RECQ helicase, ATP-depe 55.2 5.7 0.00019 45.3 3.0 28 2-29 311-340 (523)
122 1fuu_A Yeast initiation factor 55.1 2.5 8.6E-05 45.7 0.0 27 2-28 334-362 (394)
123 1ztd_A Hypothetical protein PF 53.4 34 0.0012 29.5 6.6 86 643-769 13-100 (133)
124 3i5x_A ATP-dependent RNA helic 53.0 5.2 0.00018 45.8 2.2 29 2-30 417-447 (563)
125 2v1x_A ATP-dependent DNA helic 52.4 6.7 0.00023 45.5 3.0 27 2-28 342-370 (591)
126 2j0s_A ATP-dependent RNA helic 52.2 6.6 0.00023 42.7 2.8 20 2-21 351-370 (410)
127 2z83_A Helicase/nucleoside tri 49.6 6.6 0.00023 43.9 2.3 20 2-21 280-299 (459)
128 3o8b_A HCV NS3 protease/helica 47.6 6.2 0.00021 46.2 1.7 25 4-29 486-511 (666)
129 3fho_A ATP-dependent RNA helic 46.4 7.4 0.00025 44.1 2.1 19 2-20 432-457 (508)
130 3sqw_A ATP-dependent RNA helic 44.8 8.4 0.00029 44.4 2.2 20 2-21 366-385 (579)
131 2whx_A Serine protease/ntpase/ 42.2 8.6 0.00029 44.8 1.8 20 2-21 445-464 (618)
132 1t4o_A Ribonuclease III; RNT1P 40.9 33 0.0011 30.4 4.9 38 45-83 39-76 (117)
133 1yks_A Genome polyprotein [con 40.3 8.6 0.00029 42.7 1.3 27 2-28 266-295 (440)
134 2jlq_A Serine protease subunit 38.4 14 0.00049 41.0 2.8 19 4-22 280-298 (451)
135 2xau_A PRE-mRNA-splicing facto 36.8 6.6 0.00023 47.1 -0.4 26 5-30 415-441 (773)
136 2db3_A ATP-dependent RNA helic 34.7 14 0.00049 40.7 2.0 20 2-21 375-394 (434)
137 2oca_A DAR protein, ATP-depend 33.8 12 0.00041 42.1 1.2 29 2-30 423-453 (510)
138 1tf5_A Preprotein translocase 27.3 19 0.00064 43.1 1.3 17 2-18 513-529 (844)
139 3dmq_A RNA polymerase-associat 26.6 23 0.00079 43.6 2.0 20 1-20 580-599 (968)
140 3fmp_B ATP-dependent RNA helic 25.8 14 0.00049 41.1 0.0 28 2-29 408-443 (479)
141 3jux_A Protein translocase sub 22.3 30 0.001 40.8 1.8 17 2-18 555-571 (822)
142 1yvu_A Hypothetical protein AQ 22.1 3.8 0.00013 48.3 -5.9 39 296-339 184-225 (706)
143 2fsf_A Preprotein translocase 21.5 28 0.00097 41.6 1.3 12 5-16 554-565 (853)
144 2xgj_A ATP-dependent RNA helic 20.7 32 0.0011 42.5 1.6 29 1-29 460-496 (1010)
145 1gm5_A RECG; helicase, replica 20.7 34 0.0012 40.9 1.8 27 2-28 664-692 (780)
146 2va8_A SSO2462, SKI2-type heli 20.0 45 0.0015 39.3 2.7 19 4-22 376-394 (715)
No 1
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=100.00 E-value=1.9e-83 Score=760.13 Aligned_cols=532 Identities=22% Similarity=0.275 Sum_probs=414.3
Q ss_pred CceEEEEecCcCccccccccceeeeeCCeEEEEEe-eCccc-ccCHHHHHHHHHHHHHHHHHHhccc---cchhhHHhhh
Q 003062 152 AHDIVLAVRTELESEIKKVNFDLEVDRGRLTVNLK-HLGKI-QLTPDKVLLCRRFQIALFRVIMDHN---LDKLNEILKG 226 (852)
Q Consensus 152 ~~~~~llt~~~LP~~~~~~~~~Lf~~~~~~~v~l~-~~~~i-~l~~e~l~~l~~Ft~~lf~~v~~~~---~~~~~~~~~~ 226 (852)
+..+.|++.++||.. +.|+||.++|.+.|++. +++++ .+|++|++.+++||.+||+.+++.. +.+++..+..
T Consensus 18 ~~~~~~l~~~~l~~~---~~f~~~~~~g~~~v~v~~~~~~~~~l~~~q~~~~~~Fq~~lf~~~l~~~~~~~~~~~~~~~~ 94 (756)
T 2qvw_A 18 PSHWLLLLDTHLGTL---PGFKVSAGRGLPAAEVYFEAGPRVSLSRTDATIVAVYQSILFQLLGPTFPASWTEIGATMPH 94 (756)
T ss_dssp EEEEEEEESSCCCSC---CCEEECSBTTBCCEEEECCBCCCCCCCHHHHHHHHHHHHHHHHHHCTTSCSCHHHHHHTCCG
T ss_pred cceeeeeecCCCCCC---CCceeecCCCceeEEEEeecCCccccCHHHHHHHHHHHHHHHHHHhcccchhhhhccccccc
Confidence 478999999999985 58999999998888888 77776 9999999999999999999998832 1121122111
Q ss_pred ------ccccCCCCc-cEEEecCCCC--ccCccccccccccccccCCCCCCCCcccccchhhccCCCcccccccCcEEEc
Q 003062 227 ------LWLRDNLEI-DYLLLPASEQ--SIDWEPVASLSFPCDIGLKHHKNCSTMSNARVVQTKSGPLCTCMIYNSVVCT 297 (852)
Q Consensus 227 ------~~~~~~~~~-~yl~~Pl~~~--~iDw~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 297 (852)
.+..+.... .|+|||+... .|||..+........ ..... .....++..+.++++|++|+|
T Consensus 95 ~~~~~~~~~~~~~~~~~Yll~Pl~~~~~~iDw~~v~~s~~~~~--~~~~~---------~~~~~d~~~~~~~l~g~vV~t 163 (756)
T 2qvw_A 95 NEYTFPRFISNPPQFATLAFLPLLSPTSPLDLRALMVTAQLMC--DAKRL---------SDEYTDYSTLSASLHGRMVAT 163 (756)
T ss_dssp GGSSSTTCCCCCSCCCCEEEEEESSTTCCCCSHHHHHHHHHHH--TCCCG---------GGC------CTTTSTTCEEEE
T ss_pred cccccccccCCCcccceEEEEeCCCCCCceehhhhhhhhhhcc--ccCCC---------ccccccchhhHHHhCCCEEec
Confidence 112233444 8999998753 899998853211000 00000 011345556788999999999
Q ss_pred CcCC-ceEEEEeecCCCCCCCCCCCCCCCcchHHHHHHHHhCcccccCCceeEEEeeccccccccchhhhhccCCCCcce
Q 003062 298 PHSG-QIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLCFDQELLLNGRRIFHAQNYLSKCRQEKQREPSKIS 376 (852)
Q Consensus 298 ~~~~-~~Y~v~~i~~dl~p~S~f~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~~~r~N~L~~~~~~~~~~~~~~~ 376 (852)
+||| ++|+|++|++|+||.|+||.+ +..+||.+||++|||++|.+++||||.++++++..|+..+.... .++.....
T Consensus 164 ~ynn~r~Y~i~~id~d~~P~S~F~~~-~~~~Ty~dYYk~ky~i~I~d~~QPLL~~~~~~~~~~~r~~~~~~-~~~~~~~~ 241 (756)
T 2qvw_A 164 PEISWSLYVVLGIDSTQTSLSYFTRA-NESITYMRYYATAHNIHLRAADLPLVAAVRLDDLKDHQIPAPGS-WDDLAPKL 241 (756)
T ss_dssp TTTTTEEEEEEEEEEEEETTSEEEET-TEEEEHHHHHHHTTCCCCSCTTSEEEEEEETTTTTTCCCCSTTC--CCSCSSC
T ss_pred CCCCceEEEEEEecCCCCCCCcCCCC-CCCCCHHHHHHHHcCcccccCCCCeEEEEecccccccccccccc-cccCCccc
Confidence 9999 899999999999999999964 36789999999999999999999999999997666664432211 11223345
Q ss_pred eecCcchhhhhcccCcHHHHH--HhhhhhhHHHHHHHHHHHHH-HHHHHhhccccCCCCCHHHHHHHhccCCCCCC----
Q 003062 377 FELPPELCRIIMGPMSLSTFY--SFTFVPSIMHRLQSLLLAVN-LKNMLLDHCMQNVTIPTSKVLEAITTKKCQEG---- 449 (852)
Q Consensus 377 ~~L~PElC~~~~~p~~~~~~~--~~~~lPsi~~rle~~l~a~~-l~~~l~~~~~~~~~~~~~lll~AlT~~s~~~~---- 449 (852)
++||||+|.+ +|+|+++|+ ++.+||||+||||++++|.+ ++. .|+....|+. .+++|||++++.+.
T Consensus 242 v~L~PELC~v--t~Lp~sl~~~~~~~~lPsil~rie~ll~a~~al~~----~~p~~~~i~~-~~leAlT~~~~~~~g~~~ 314 (756)
T 2qvw_A 242 RFLPPELCLL--LPDEFDLIRVQALQFLPEIAKHICDIQNTICALDK----SFPDCGRIGG-ERYFAITAGLRLDQGRGR 314 (756)
T ss_dssp EEECTTTCEE--CCTTSCTTHHHHHTTHHHHHHHHHHHHHHHHHHGG----GSCCCSCCHH-HHHHHHHHHHBCSCCBTT
T ss_pred eeeCHHHhee--ecCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHh----cCCcccccCH-HHHHHHhhhhhhhhcccc
Confidence 8999999966 666666666 99999999999999999976 433 3444433443 67789988776543
Q ss_pred -----------------CCchhhhhhhhhHHhHHHHHHHHHhcCCCCcchhhHHHhhccccHHHHHHHHhCCcccccccc
Q 003062 450 -----------------FHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTE 512 (852)
Q Consensus 450 -----------------~nyeRLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~vsN~~L~~~a~~~gL~~~i~~~ 512 (852)
.|||||||||||||++++|.+||.+||+.+||+||.+|+.+|||++|+++|+++||++||+..
T Consensus 315 ~~~~~~~AlTh~s~~~~~nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l~~~ 394 (756)
T 2qvw_A 315 GLAGWRTPFGPFGVSHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFS 394 (756)
T ss_dssp BSBTTEEECBGGGBCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBCC
T ss_pred chhhhhhhcccccccCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcChHHHhccC
Confidence 389999999999999999999999999999999999999999999999999999999999873
Q ss_pred ccCCCCcccCCCCCCCcccCccccccccccccccccccccchhHHHHHHHHHHHhhc-CChHHHHHhhhhc---------
Q 003062 513 PFDPKMWMIPGDNSGSYELNDHSLFNERKIYVTGRKKVKSKTVADVVEALIGAFLST-GGENVGLIFLDRI--------- 582 (852)
Q Consensus 513 ~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADv~EAliGA~yl~-~G~~~a~~~~~~l--------- 582 (852)
++. . ..+|++||+|||+|||+|+| +|++.|.+|+..+
T Consensus 395 ---------~~e--------------------~----~~~~ilaD~~EAliGAiylD~~G~~~a~~~v~~~~~~~~~~~~ 441 (756)
T 2qvw_A 395 ---------NNL--------------------V----AKSKTWADMYEEIVGSIFTGPNGIYGCEEFLAKTLMSPEHSKT 441 (756)
T ss_dssp ---------SCC--------------------------CCCCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHBCGGGSCC
T ss_pred ---------CCC--------------------C----CcccHHHhHHHHHhCcccccccChHHHHHHHHHHHHhhhhccc
Confidence 222 0 25789999999999999999 9999888775322
Q ss_pred ------------------------------------------------------------------CccccCCC-----c
Q 003062 583 ------------------------------------------------------------------GIKVDFVN-----V 591 (852)
Q Consensus 583 ------------------------------------------------------------------~~~~~~~~-----~ 591 (852)
|+++.+.. .
T Consensus 442 ~~~~~~Dp~Kt~LqE~~q~~~ia~~v~~~~~~ak~~~~~~~~~~~aa~~aL~~l~~~~~~~f~~w~g~~~~~~~~~~~~~ 521 (756)
T 2qvw_A 442 VGSACPDAVTKASKRVCMGEAGAHEFRSLVDYACEQGISVFCSSRVSTMFLERLRDIPAEDMLDWYRLGIQFSHRSGLSG 521 (756)
T ss_dssp ---CCCHHHHHHHHHHHTSCCCHHHHHHHHHHTTTTTCCCBSSSHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTSSC
T ss_pred ccccccCchHHHHHHHHhccchhhhhhhhhhHHhhhccccchhhHHHHHHHHhhcccchHhHHhhcCCcccccccccccc
Confidence 11100000 0
Q ss_pred c----------------------------c------------------chhccc------------ChhhHHhHHHHHHH
Q 003062 592 P----------------------------Y------------------ERQFQV------------QAERLVNVRHLESL 613 (852)
Q Consensus 592 ~----------------------------~------------------~~~~~~------------~~~~~~~~~~le~~ 613 (852)
+ + +++.+. .......+..+|++
T Consensus 522 ~~~~ks~~d~~~al~~g~~l~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~lE~~ 601 (756)
T 2qvw_A 522 PGGVVSVIDIMTHLARGLWLGSPGFYVEQQTDKNESACPPTIPVLYIYHRSVQCPVLYGSLTETPTGPVASKVLALYEKI 601 (756)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHCCEEECCC---------CCEEECCTTTTSSSCCTTTTCCCC---CTTTHHHHHHHHHHH
T ss_pred ccccchhhhHHHHhhcCceeccccccccccccccccccccCCchhhhhcccccCccccccccccccchhhhhHHHHHHHH
Confidence 0 0 000000 00012347899999
Q ss_pred cCcccCC--------------------------HHHHHHHhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHHHHHhCCC
Q 003062 614 LNYSFRD--------------------------PSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPT 667 (852)
Q Consensus 614 lgy~F~~--------------------------~~LL~~AlTH~S~~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~ 667 (852)
|||+|+| +.||.+||||+| ||||||||||||+++|++|||.+||+
T Consensus 602 lgY~F~~~~~~~~~~~L~~~~l~~i~~~~~~~~~~LL~~AlTH~S---------neRLEfLGDaVL~l~vs~~L~~~~p~ 672 (756)
T 2qvw_A 602 LAYESSGGSKHIAAQTVSRSLAVPIPSGTIPFLIRLLQIALTPHV---------YQKLELLGDAFLKCSLALHLHALHPT 672 (756)
T ss_dssp HSSCCCCSSHHHHHHHHHHTTCSCCCSSCHHHHHHHHHHHHSTGG---------GHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hCCCccCcchhhhHhhhhhhhccccccccccccHHHHHHHhcCcc---------chHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999 899999999999 89999999999999999999999999
Q ss_pred CCcchHHHHHHHhcChHHHHHHHHHcC--CchhhhccChhHHHHHHHHHhhhhhhccccccCccccCCCChhhHHHHHHH
Q 003062 668 LSPGDLTDMRSASVNNDCYALSSVKHG--LHKHILHASQELYKWINITVDSFERLSLESTFGWESETSFPKALGDIIESL 745 (852)
Q Consensus 668 ~~~~~Lt~~r~~lv~n~~La~~a~~~g--L~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~laD~~EAl 745 (852)
+++|.||.+|+++|||++||.+|+++| |++||+.+.++. ...+|++||+|||+
T Consensus 673 ~~eG~Lt~lrs~lV~~~~La~~a~~lg~~L~~~l~~~~~e~-------------------------~~~~kilaD~~EAl 727 (756)
T 2qvw_A 673 LTEGALTRMRQSAETNSVLGRLTKRFPSVVSEVIIESHPKI-------------------------QPDSKVYGDTFEAI 727 (756)
T ss_dssp CCHHHHHHHHHHTTSHHHHHHHHHTSCTHHHHHHHHHSTTC-------------------------CTTCSHHHHHHHHH
T ss_pred CChHHHHHHHHHHhCChHHHHHHHHhcccHHHHHhcCchhh-------------------------cCCccHHHHHHHHH
Confidence 999999999999999999999999999 999999876531 24689999999999
Q ss_pred hheeeeeCCCCHHHHHHHHHHhhcccCCcc
Q 003062 746 SGAIFVDSGCNKEVVFESIRPLLEPMITPE 775 (852)
Q Consensus 746 iGAi~~DsG~~~~~v~~~~~~~l~~~~~~~ 775 (852)
|||||+|+|+ +.|++|+.+++.|.+..+
T Consensus 728 iGAiylD~G~--~~a~~~v~~~~~~~l~~~ 755 (756)
T 2qvw_A 728 LAAILLACGE--EAAGAFVREHVLPQVVAD 755 (756)
T ss_dssp HHHHHHHHCH--HHHHHHHHHHTGGGCCCC
T ss_pred HHHHHHhCCH--HHHHHHHHHHHHHHhhcc
Confidence 9999999986 689999999999887643
No 2
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=100.00 E-value=2.2e-43 Score=375.09 Aligned_cols=237 Identities=40% Similarity=0.549 Sum_probs=192.6
Q ss_pred hHHHHHHHcCcccCCHHHHHHHhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhcChHH
Q 003062 606 NVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDC 685 (852)
Q Consensus 606 ~~~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~~~Lt~~r~~lv~n~~ 685 (852)
.+..||++|||+|+|+.||.+||||+||.......|||||||||||||+++|++|||.+||++++|.||.+|+++|||++
T Consensus 14 ~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~~neRLEfLGDaVL~l~v~~~L~~~~p~~~~g~Lt~lrs~lV~~~~ 93 (265)
T 3c4b_A 14 GFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTI 93 (265)
T ss_dssp THHHHHHHHTCCCSSHHHHHHHHBCTTCTTCCSSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHSSHHH
T ss_pred HHHHHHHHhCCccCCHHHHHHHhcCcCcCCCCCCCchHhHHHHhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhHH
Confidence 47889999999999999999999999997433457999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCchhhhccChhHHHHHHHHHhhh-hhhcc----------ccccCccccCCCChhhHHHHHHHhheeeeeCC
Q 003062 686 YALSSVKHGLHKHILHASQELYKWINITVDSF-ERLSL----------ESTFGWESETSFPKALGDIIESLSGAIFVDSG 754 (852)
Q Consensus 686 La~~a~~~gL~~~l~~~~~~~~~~i~~~~~~~-~~~~~----------~~~~~~~~~~~~~k~laD~~EAliGAi~~DsG 754 (852)
||.+|+++||+++|++.++.+...+.+|++.. ..... +....+......||++||+|||+|||||+|+|
T Consensus 94 La~~a~~lgl~~~l~~~~~~l~~~i~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~laD~~EAliGAiylD~G 173 (265)
T 3c4b_A 94 FASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSG 173 (265)
T ss_dssp HHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHHHC------------------CCSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcChHHHHHhcChhHHHHHHHHHHHHhhhhhhcchhHHhhhcchhhhhhcccccchHHHHHHHHHhhheeeecC
Confidence 99999999999999999888888888887631 11100 00011222356799999999999999999999
Q ss_pred CCHHHHHHHHHHhhcccCCcc--cccCChhhHHHHHHHhCCCceeeEEeeecCCceEEEEEEEECCEEEEeEEeeCCHHH
Q 003062 755 CNKEVVFESIRPLLEPMITPE--TMRLQPARELNEYCQKHHFSMKKTVAPRINGKAAVTVEVHANGTLFKHTHADADKET 832 (852)
Q Consensus 755 ~~~~~v~~~~~~~l~~~~~~~--~~~~~P~~~L~e~~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~i~~~g~g~s~k~ 832 (852)
+|++.|++|+.+++.|.++.. ..+.+|+++|++++++. ..+. .......+.|+|+|+++|+.++ +|.|.|||+
T Consensus 174 ~~~~~~~~~i~~~~~~~i~~~~~~~~k~~l~el~~~~~~~---~~~~-~~~~~~~~~f~v~v~v~~~~~~-~G~G~SkK~ 248 (265)
T 3c4b_A 174 MSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEMEPET---AKFS-PAERTYDGKVRVTVEVVGKGKF-KGVGRSYRI 248 (265)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHCTTT---EEEC-CCEECTTSCEEEEEEETTTEEE-EEEESSHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhHhhcCCCCHHHHHHHhccCC---ceee-eccccCCCcEEEEEEEecceEE-EEeeCCHHH
Confidence 999999999999999886531 23456666666665532 1222 1122345679999999998887 899999999
Q ss_pred HHHHHHHHHHHHhhh
Q 003062 833 AKKVASKEVLKSLKA 847 (852)
Q Consensus 833 Ak~~AA~~AL~~L~~ 847 (852)
||+.||+.||++|+.
T Consensus 249 Aeq~AA~~AL~~l~~ 263 (265)
T 3c4b_A 249 AKSAAARRALRSLKA 263 (265)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999974
No 3
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=100.00 E-value=1.9e-43 Score=369.33 Aligned_cols=218 Identities=28% Similarity=0.402 Sum_probs=130.4
Q ss_pred hHHhHHHHHHHcCcccCCHHHHHHHhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhcC
Q 003062 603 RLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVN 682 (852)
Q Consensus 603 ~~~~~~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~~~Lt~~r~~lv~ 682 (852)
.+.++..||++|||+|+|+.||.+||||+||.. + .+||||||||||||+++|++|||.+||+.++|.|+.+|+.+||
T Consensus 24 ~~~~l~~le~~lgy~F~~~~LL~~AlTH~S~~~-~--~~neRLefLGDavL~~~v~~~L~~~~p~~~eg~Ls~~r~~lVs 100 (248)
T 3n3w_A 24 AMKNIEKLEQSLTYEFKDKNLLIHALTHKSFKK-S--YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVN 100 (248)
T ss_dssp -CTTHHHHHHHHTCCCSSHHHHHHHTBCTTSBT-T--BCSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHS
T ss_pred cHHHHHHHHHHHCCCCCCHHHHHHHhcCcCCCC-C--CCcHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHC
Confidence 344589999999999999999999999999972 2 7999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCchhhhccChhHHHHHHHHHhhhhhhccccccCccccCCCChhhHHHHHHHhheeeeeCCCCHHHHHH
Q 003062 683 NDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTFGWESETSFPKALGDIIESLSGAIFVDSGCNKEVVFE 762 (852)
Q Consensus 683 n~~La~~a~~~gL~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~laD~~EAliGAi~~DsG~~~~~v~~ 762 (852)
|++||.+|.++||+++|+.++.+... .....+|++||+|||+|||||+|+|+ +.+++
T Consensus 101 ~~~La~~a~~lgL~~~l~~~~~e~~~---------------------~g~~~~~~lad~fEAliGAiyld~G~--~~~~~ 157 (248)
T 3n3w_A 101 EKSFAKIANSLNLGDFILMSVAEENN---------------------GGKEKPSILSDALEAIIGAIHLEAGF--EFAKT 157 (248)
T ss_dssp HHHHHHHHHHTTGGGTCBCCHHHHHT---------------------TGGGCHHHHHHHHHHHHHHHHHHHCH--HHHHH
T ss_pred HHHHHHHHHHcCcHHHhhcCchhhhc---------------------CCCCCccHHHHHHHHHHHHHHHHCCh--HHHHH
Confidence 99999999999999999988764321 01356899999999999999999986 68999
Q ss_pred HHHHhhcccCCc---ccccCChhhHHHHHHHhCCCcee-eEEeeecC--CceEEEEEEEECCEEEEeEEeeCCHHHHHHH
Q 003062 763 SIRPLLEPMITP---ETMRLQPARELNEYCQKHHFSMK-KTVAPRIN--GKAAVTVEVHANGTLFKHTHADADKETAKKV 836 (852)
Q Consensus 763 ~~~~~l~~~~~~---~~~~~~P~~~L~e~~~~~~~~~~-~~~~~~~~--g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~ 836 (852)
|+.+++.|.+.. .....||++.|+||||+.+...+ |..+...+ ..+.|+|+|+++|+.++ +|.|.|||+||+.
T Consensus 158 ~i~~~~~~~l~~~~~~~~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~-~G~G~SKK~Aeq~ 236 (248)
T 3n3w_A 158 IALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELA-RAIAGSKKEAQQM 236 (248)
T ss_dssp HHHHHHHHHCC---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhccccccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEE-EeeeCCHHHHHHH
Confidence 999999998764 22457999999999999887654 76333322 25689999999999887 8999999999999
Q ss_pred HHHHHHHHhhh
Q 003062 837 ASKEVLKSLKA 847 (852)
Q Consensus 837 AA~~AL~~L~~ 847 (852)
||+.||+.|+.
T Consensus 237 AA~~AL~~L~~ 247 (248)
T 3n3w_A 237 AAKIALEKLGA 247 (248)
T ss_dssp -----------
T ss_pred HHHHHHHHHHc
Confidence 99999999864
No 4
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=100.00 E-value=3.6e-42 Score=355.32 Aligned_cols=210 Identities=28% Similarity=0.369 Sum_probs=185.1
Q ss_pred hHHHHHHHcCcccCCHHHHHHHhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhcChHH
Q 003062 606 NVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDC 685 (852)
Q Consensus 606 ~~~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~~~Lt~~r~~lv~n~~ 685 (852)
.+..||++|||+|+|+.||.+||||+||.. ..+||||||||||||+++|++|||.+||+.++|.||.+|+.+|||++
T Consensus 3 ~~~~l~~~lg~~f~~~~ll~~AlTh~S~~~---~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~ 79 (221)
T 2nug_A 3 MLEQLEKKLGYTFKDKSLLEKALTHVSYSK---KEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEF 79 (221)
T ss_dssp CHHHHHHHHTCCCSSHHHHHHHHBCTTTCS---SSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHhCCCcCCHHHHHHHhCCCCCCC---CCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHH
Confidence 467899999999999999999999999972 25999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCchhhhccChhHHHHHHHHHhhhhhhccccccCccccCCCChhhHHHHHHHhheeeeeCCCCHHHHHHHHH
Q 003062 686 YALSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTFGWESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIR 765 (852)
Q Consensus 686 La~~a~~~gL~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~laD~~EAliGAi~~DsG~~~~~v~~~~~ 765 (852)
||.+|.++||+++|+.+..+ ..+++++|+|||+|||||+|+|++.+.+++|+.
T Consensus 80 la~~a~~l~l~~~l~~~~~~---------------------------~~~~~lad~~EAliGAiyld~g~~~~~~~~~i~ 132 (221)
T 2nug_A 80 FNLLAQKLELHKFIRIKRGK---------------------------INETIIGDVFEALWAAVYIDSGRDANFTRELFY 132 (221)
T ss_dssp HHHHHHTTTGGGTCBSCTTC---------------------------CCHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHcChHHhhccCCCc---------------------------ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999877642 127999999999999999999998766999999
Q ss_pred HhhcccCC-c---ccccCChhhHHHHHHHhCCCce-eeEEeeecC--CceEEEEEEEECCEEEEeEEeeCCHHHHHHHHH
Q 003062 766 PLLEPMIT-P---ETMRLQPARELNEYCQKHHFSM-KKTVAPRIN--GKAAVTVEVHANGTLFKHTHADADKETAKKVAS 838 (852)
Q Consensus 766 ~~l~~~~~-~---~~~~~~P~~~L~e~~~~~~~~~-~~~~~~~~~--g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA 838 (852)
+++.|.+. . .....||++.|+||||+++... .|..+...+ +.+.|+|+|+++|+ ++ +|.|.|||+||+.||
T Consensus 133 ~~~~~~~~~~~~~~~~~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~-~G~G~skK~Ae~~AA 210 (221)
T 2nug_A 133 KLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RT-LGEGKSKKEAEQRAA 210 (221)
T ss_dssp HHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EE-EEEESSHHHHHHHHH
T ss_pred HHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EE-EEecCCHHHHHHHHH
Confidence 99988765 3 2234799999999999887754 577444333 25789999999999 77 899999999999999
Q ss_pred HHHHHHhhh
Q 003062 839 KEVLKSLKA 847 (852)
Q Consensus 839 ~~AL~~L~~ 847 (852)
+.||+.|+.
T Consensus 211 ~~AL~~L~~ 219 (221)
T 2nug_A 211 EELIKLLEE 219 (221)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHhhc
Confidence 999999974
No 5
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=100.00 E-value=1.2e-41 Score=357.91 Aligned_cols=227 Identities=28% Similarity=0.359 Sum_probs=190.7
Q ss_pred cChhhHHhHHHHHHHcCcccCCHHHHHHHhccCCCCCCC-CC-----CcchhhhHhhHHHHHHHHHHHHHHhCCCCCcch
Q 003062 599 VQAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPE-IP-----RCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGD 672 (852)
Q Consensus 599 ~~~~~~~~~~~le~~lgy~F~~~~LL~~AlTH~S~~~~~-~~-----~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~~~ 672 (852)
++......+..||++|||+|+|+.||.+||||+||.... .. .+||||||||||||+++|++|||.+||++++|.
T Consensus 13 ~~~~~~~~~~~l~~~lgy~f~~~~LL~~AlTH~S~~~~~~~~~~~~~~~nerLefLGDavL~l~v~~~L~~~~p~~~eg~ 92 (252)
T 1o0w_A 13 MNESERKIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGD 92 (252)
T ss_dssp CCHHHHHHHHHHHHHHCCCCSSHHHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHH
T ss_pred cccccHHHHHHHHHHHCCCCCCHHHHHHHhCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344445678999999999999999999999999995210 11 389999999999999999999999999999999
Q ss_pred HHHHHHHhcChHHHHHHHHHcCCchhhhccChhHHHHHHHHHhhhhhhccccccCccccCCCChhhHHHHHHHhheeeee
Q 003062 673 LTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTFGWESETSFPKALGDIIESLSGAIFVD 752 (852)
Q Consensus 673 Lt~~r~~lv~n~~La~~a~~~gL~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~laD~~EAliGAi~~D 752 (852)
|+.+|+.+|||++||.+|.++||+++|+.+..+... . ....+++++|+|||+|||||+|
T Consensus 93 Ls~~r~~lV~~~~la~~a~~lgL~~~l~~~~~e~~~-----------------~----~~~~~~~lad~~EAliGAiyld 151 (252)
T 1o0w_A 93 LARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKT-----------------G----GRDRDSILADAFEALLAAIYLD 151 (252)
T ss_dssp HHHHHHHHTSHHHHHHHHHHTTHHHHCBCCHHHHHT-----------------T----GGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHcCcHHhhccCchhhhc-----------------C----CCCCccHHHhHHHHHHHHHHHc
Confidence 999999999999999999999999999987654311 0 1346899999999999999999
Q ss_pred CCCCHHHHHHHHHHhhcccCCc---ccccCChhhHHHHHHHhCCCc-eeeEEeeecC--CceEEEEEEEECCEEEEeEEe
Q 003062 753 SGCNKEVVFESIRPLLEPMITP---ETMRLQPARELNEYCQKHHFS-MKKTVAPRIN--GKAAVTVEVHANGTLFKHTHA 826 (852)
Q Consensus 753 sG~~~~~v~~~~~~~l~~~~~~---~~~~~~P~~~L~e~~~~~~~~-~~~~~~~~~~--g~~~~~~~v~v~~~~i~~~g~ 826 (852)
+|+ +.+++|+.+++.|.+.. .....||++.|+||||+.+.. +.|..+...+ ..+.|+|+|+++|+.++ +|.
T Consensus 152 ~g~--~~~~~~i~~~~~~~~~~~~~~~~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~-~G~ 228 (252)
T 1o0w_A 152 QGY--EKIKELFEQEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIA-TGK 228 (252)
T ss_dssp HCH--HHHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEE-EEE
T ss_pred CCH--HHHHHHHHHHHHHHHHHhhhcccccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEE-EEe
Confidence 986 68999999999887653 223579999999999988774 4577444333 35789999999999887 899
Q ss_pred eCCHHHHHHHHHHHHHHHhhhhC
Q 003062 827 DADKETAKKVASKEVLKSLKASF 849 (852)
Q Consensus 827 g~s~k~Ak~~AA~~AL~~L~~~~ 849 (852)
|.|||+||+.||+.||+.|+...
T Consensus 229 G~SKK~Aeq~AA~~AL~~L~~~~ 251 (252)
T 1o0w_A 229 GRTKKEAEKEAARIAYEKLLKER 251 (252)
T ss_dssp ESSHHHHHHHHHHHHHHHHC---
T ss_pred eCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999997653
No 6
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=5.8e-41 Score=351.19 Aligned_cols=218 Identities=28% Similarity=0.319 Sum_probs=127.5
Q ss_pred hHHHHHHHcCcccCCHHHHHHHhccCCCCC-CCCCCcchhhhHhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhcChH
Q 003062 606 NVRHLESLLNYSFRDPSLLVEALTHGSYML-PEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNND 684 (852)
Q Consensus 606 ~~~~le~~lgy~F~~~~LL~~AlTH~S~~~-~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~~~Lt~~r~~lv~n~ 684 (852)
.+..||++|||+| |+.||.+||||+||.. +....+||||||||||||+++|++|||.+||+.++|.||.+|+.+|||+
T Consensus 6 ~l~~l~~~lgy~f-~~~ll~~AlTH~S~~~~~~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~ 84 (242)
T 2a11_A 6 SRQPLLDALGVDL-PDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQ 84 (242)
T ss_dssp CCHHHHHHHTSCC-CHHHHHHHTBCHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHCCCC-CHHHHHHHhCCcCccccCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCHH
Confidence 3578999999999 9999999999999952 2345799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc---CCchhhhccChhHHHHHHHHHhhhhhhccccccCccccCCCChhhHHHHHHHhheeeeeCCCCHHHHH
Q 003062 685 CYALSSVKH---GLHKHILHASQELYKWINITVDSFERLSLESTFGWESETSFPKALGDIIESLSGAIFVDSGCNKEVVF 761 (852)
Q Consensus 685 ~La~~a~~~---gL~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~laD~~EAliGAi~~DsG~~~~~v~ 761 (852)
+||.+|.++ ||++||+.+..+... . ....+++++|+|||+|||||+|+|+ +.++
T Consensus 85 ~la~~a~~l~~~gL~~~l~~~~~e~~~-----------------~----~~~~~~~lad~~EAliGAiyld~g~--~~~~ 141 (242)
T 2a11_A 85 ALADVARRLCAEGLGVHVLLGRGEANT-----------------G----GADKSSILADGMESLLGAIYLQHGM--EKAR 141 (242)
T ss_dssp HHHHHHHHHSSSCSGGGCBCCHHHHHT-----------------T----GGGCHHHHHHHHHHHHHHHHHHHCH--HHHH
T ss_pred HHHHHHHHhhhhChHHHhhcCchhhhc-----------------C----CCCCccHHHHHHHHHHHHHHhcCCH--HHHH
Confidence 999999999 999999987654221 0 1246899999999999999999986 6899
Q ss_pred HHHHHhhcccCCcc---cccCChhhHHHHHHHhCCCc-eeeEEeeecC--CceEEEEEEEECCEEEEeEEeeCCHHHHHH
Q 003062 762 ESIRPLLEPMITPE---TMRLQPARELNEYCQKHHFS-MKKTVAPRIN--GKAAVTVEVHANGTLFKHTHADADKETAKK 835 (852)
Q Consensus 762 ~~~~~~l~~~~~~~---~~~~~P~~~L~e~~~~~~~~-~~~~~~~~~~--g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~ 835 (852)
+|+.+++.|.+... ....||++.|+||||+++.. +.|.... .+ ..+.|+|+|+++|+.++ +|.|.|||+||+
T Consensus 142 ~~i~~~~~~~~~~~~~~~~~~dpkt~Lqe~~q~~~~~~p~Y~~~~-~Gp~h~~~F~v~v~v~g~~~~-~G~G~skk~Ae~ 219 (242)
T 2a11_A 142 EVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTS-TGPDHDKEFTAVVVVMDSEYG-SGVGRSKKEAEQ 219 (242)
T ss_dssp HHHHHHTHHHHHHTTC----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhccccCChHHHHHHHHHHhCCCCCeEEEec-cCCCCCCeEEEEEEECCEEEE-EeeeCCHHHHHH
Confidence 99999988876432 23579999999999998874 4476333 22 24689999999999887 899999999999
Q ss_pred HHHHHHHHHhhhhC
Q 003062 836 VASKEVLKSLKASF 849 (852)
Q Consensus 836 ~AA~~AL~~L~~~~ 849 (852)
.||+.||+.|+...
T Consensus 220 ~AA~~AL~~L~~~~ 233 (242)
T 2a11_A 220 KAAAAAWKALEVLD 233 (242)
T ss_dssp --------------
T ss_pred HHHHHHHHHHhhcc
Confidence 99999999998653
No 7
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=7.5e-40 Score=354.45 Aligned_cols=217 Identities=23% Similarity=0.295 Sum_probs=123.7
Q ss_pred HHHHHHcCcc-cCCHHHHHHHhccCCCCCCC--------CCCcchhhhHhhHHHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 003062 608 RHLESLLNYS-FRDPSLLVEALTHGSYMLPE--------IPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRS 678 (852)
Q Consensus 608 ~~le~~lgy~-F~~~~LL~~AlTH~S~~~~~--------~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~~~Lt~~r~ 678 (852)
..||++|||+ |+|+.||.+||||+||.... ...+||||||||||||+++|++|||.+||++++|.||.+|+
T Consensus 86 ~~lE~~igy~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDavL~l~vs~~L~~~~P~~~eG~Lt~lr~ 165 (341)
T 3rv0_A 86 TDVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKE 165 (341)
T ss_dssp CTTGGGCSSCCCSCHHHHHHHHCCCCCC---CCSCHHHHGGGCTHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred hHHHHhcCCCCcCCHHHHHHHhcCcCccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Confidence 4589999999 99999999999999997321 24689999999999999999999999999999999999999
Q ss_pred HhcChHHHHHHHHHcCCchhhhccChhHHHHHHHHHhhhhhhccccccCccccCCCChhhHHHHHHHhheeeeeC-CCCH
Q 003062 679 ASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTFGWESETSFPKALGDIIESLSGAIFVDS-GCNK 757 (852)
Q Consensus 679 ~lv~n~~La~~a~~~gL~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~laD~~EAliGAi~~Ds-G~~~ 757 (852)
.+|||++||.+|.++||+++|+.+.+.... . .+...++++||+|||+|||||+|+ |.++
T Consensus 166 ~lVs~~~La~iA~~lgL~~~l~~~~g~~~~-----------------~---~~~~~~~ilaD~fEAlIGAIylD~~~~G~ 225 (341)
T 3rv0_A 166 SIVNNNNLFDWSTKLNFTKRLQGNIATPTR-----------------V---VKDKMSKRYADCVEAYIGALVIDRFGTEF 225 (341)
T ss_dssp HHHSHHHHHHHHHHTTTTTTTCCSSCCC------------------------CCHHHHHHHHHHHHHHHHHHHHHCSSTT
T ss_pred HHhCHHHHHHHHHHcCcHHHhhhcCChhhh-----------------c---cCCccccHHHHHHHHHHHHHhhcCccCCH
Confidence 999999999999999999999964221100 0 011357999999999999999999 3456
Q ss_pred HHHHHHHHHhhcccCCc-------ccccCChhhHHHHHHHhCCCc--eeeEEeeecCCceEEEEEEEECCEEEEeEEeeC
Q 003062 758 EVVFESIRPLLEPMITP-------ETMRLQPARELNEYCQKHHFS--MKKTVAPRINGKAAVTVEVHANGTLFKHTHADA 828 (852)
Q Consensus 758 ~~v~~~~~~~l~~~~~~-------~~~~~~P~~~L~e~~~~~~~~--~~~~~~~~~~g~~~~~~~v~v~~~~i~~~g~g~ 828 (852)
+.|++|+.+++.|.+.. .....||+++|+||+|++++. +.|..+ .++| .|+|+|+++|+.++ .|.|.
T Consensus 226 ~~a~~fi~~l~~~~l~~~~~~~~~~~~~~d~Kt~LqE~~Q~~~~~~~~~Y~~~-~~~G--pF~v~v~i~~~~~g-~G~G~ 301 (341)
T 3rv0_A 226 LDIKEWLEELSEKKLAKSSQMVIKEPLNKNAKNELAELLQINKLGHKLHYRKL-TEMP--PFRVEVKIGDILLD-EAEGN 301 (341)
T ss_dssp HHHHHHHHHHTHHHHHCGGGC-----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHcCCCCCceEEEE-eccC--CEEEEEEECCEEEE-EEEeC
Confidence 79999999998887643 123479999999999988753 457633 3333 39999999999887 89999
Q ss_pred CHHHHHHHHHHHHHHHhhhh
Q 003062 829 DKETAKKVASKEVLKSLKAS 848 (852)
Q Consensus 829 s~k~Ak~~AA~~AL~~L~~~ 848 (852)
|+|+||+.||+.||+.|+..
T Consensus 302 SKK~AEq~AA~~AL~~L~~~ 321 (341)
T 3rv0_A 302 SIREAEHRAAMKVLENDELL 321 (341)
T ss_dssp --------------------
T ss_pred CHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999998753
No 8
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=99.97 E-value=1.5e-32 Score=268.82 Aligned_cols=144 Identities=35% Similarity=0.547 Sum_probs=128.9
Q ss_pred HHhHHHHHHHcCcccCCHHHHHHHhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhcCh
Q 003062 604 LVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNN 683 (852)
Q Consensus 604 ~~~~~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~~~Lt~~r~~lv~n 683 (852)
+.++..||++|||+|+|+.||.+||||+||.. + .+||||||||||||+++|+++||.+||+.++|.|+.+|+.+|||
T Consensus 25 m~~l~~le~~lgy~F~d~~LL~~AlTH~S~~~-~--~~neRLEfLGDaVL~l~vs~~L~~~~P~~~eg~Lt~~r~~lVs~ 101 (170)
T 3o2r_A 25 MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKK-S--YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNE 101 (170)
T ss_dssp --CHHHHHHHHTCCCSSHHHHHHHTBCTTSST-T--CCSHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHhcCCCCCC-C--cchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHCH
Confidence 45689999999999999999999999999972 2 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCchhhhccChhHHHHHHHHHhhhhhhccccccCccccCCCChhhHHHHHHHhheeeeeCCCCHHHHHHH
Q 003062 684 DCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTFGWESETSFPKALGDIIESLSGAIFVDSGCNKEVVFES 763 (852)
Q Consensus 684 ~~La~~a~~~gL~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~laD~~EAliGAi~~DsG~~~~~v~~~ 763 (852)
++||.+|.++||+++|+.++.+... .....+|++||+|||+|||||+|+|+ +.+++|
T Consensus 102 ~~La~ia~~lgL~~~l~~~~~~~~~---------------------~~~~~~~ilad~fEAliGAiylD~G~--~~a~~~ 158 (170)
T 3o2r_A 102 KSFAKIANSLNLGDFILMSVAEENN---------------------GGKEKPSILSDALEAIIGAIHLEAGF--EFAKTI 158 (170)
T ss_dssp HHHHHHHHHTTGGGTCBCCHHHHHT---------------------TGGGCHHHHHHHHHHHHHHHHHHHCH--HHHHHH
T ss_pred HHHHHHHHHcCcHHhhhcCcchhhc---------------------CCCCcchHHHHHHHHHHHHHHHHCCH--HHHHHH
Confidence 9999999999999999987754321 01346899999999999999999986 689999
Q ss_pred HHHhhcccCC
Q 003062 764 IRPLLEPMIT 773 (852)
Q Consensus 764 ~~~~l~~~~~ 773 (852)
+.+++.|.+.
T Consensus 159 i~~~~~~~~~ 168 (170)
T 3o2r_A 159 ALRLIEKNFP 168 (170)
T ss_dssp HHHHHHHHCT
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 9
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=99.97 E-value=4.6e-31 Score=271.38 Aligned_cols=147 Identities=24% Similarity=0.352 Sum_probs=122.4
Q ss_pred HHHHHHcCcc-cCCHHHHHHHhccCCCCCCC--------CCCcchhhhHhhHHHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 003062 608 RHLESLLNYS-FRDPSLLVEALTHGSYMLPE--------IPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRS 678 (852)
Q Consensus 608 ~~le~~lgy~-F~~~~LL~~AlTH~S~~~~~--------~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~~~Lt~~r~ 678 (852)
..+|++|||+ |+|+.||.+||||+||.... ...+||||||||||||+++|++|||.+||+.++|.||.+|+
T Consensus 86 ~~lE~~lgY~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDaVL~l~vs~~L~~~~P~~~eG~Lt~lRs 165 (246)
T 3rv1_A 86 TDVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKE 165 (246)
T ss_dssp CGGGGGCSSCCCSCHHHHHHTTCCCC--------------CCCSHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHhcCCCCcCCHHHHHHHHcCCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHH
Confidence 4689999999 99999999999999997321 35699999999999999999999999999999999999999
Q ss_pred HhcChHHHHHHHHHcCCchhhhccChhHHHHHHHHHhhhhhhccccccCccccCCCChhhHHHHHHHhheeeeeC-CCCH
Q 003062 679 ASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERLSLESTFGWESETSFPKALGDIIESLSGAIFVDS-GCNK 757 (852)
Q Consensus 679 ~lv~n~~La~~a~~~gL~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~laD~~EAliGAi~~Ds-G~~~ 757 (852)
.+|||++||.+|.++||+++|+.+.+.-.. . .+...++++||+|||+|||||+|+ |.++
T Consensus 166 ~lVsn~~La~iA~~lgL~~~l~~~~g~~~~-----------------~---~~~~~~~ilAD~fEAlIGAIylD~~g~~l 225 (246)
T 3rv1_A 166 SIVNNNNLFDWSTKLNFTKRLQGNIATPTR-----------------V---VKDKMSKRYADCVQAYIGALVIDRFGTEF 225 (246)
T ss_dssp HHHSHHHHHHHHHHTTSHHHHCSSCC-------------------------------CHHHHHHHHHHHHHHHHHCSSTT
T ss_pred HHhCHHHHHHHHHHCCcHHHHhhcCCHhhh-----------------c---cCcccccHHHHHHHHHHHHHhHcCCCCCH
Confidence 999999999999999999999964221100 0 012467999999999999999999 8899
Q ss_pred HHHHHHHHHhhcccCCc
Q 003062 758 EVVFESIRPLLEPMITP 774 (852)
Q Consensus 758 ~~v~~~~~~~l~~~~~~ 774 (852)
+.|++|+.+++.|.+..
T Consensus 226 ~~v~~~l~~L~~p~l~e 242 (246)
T 3rv1_A 226 LDIKEWLEELSEKKLAK 242 (246)
T ss_dssp HHHHHHHHHHTHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988643
No 10
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=99.94 E-value=6.8e-28 Score=235.89 Aligned_cols=134 Identities=24% Similarity=0.356 Sum_probs=118.8
Q ss_pred HHHHHHHhhccccCCCCCHHHHHHHhccCCCCCCCCchhhhhhhhhHHhHHHHHHHHHhcCCCCcchhhHHHhhccccHH
Q 003062 416 VNLKNMLLDHCMQNVTIPTSKVLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAA 495 (852)
Q Consensus 416 ~~l~~~l~~~~~~~~~~~~~lll~AlT~~s~~~~~nyeRLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~vsN~~ 495 (852)
.+++++|+|.|++. .++.+||||+|+....||||||||||+||+++++.+||.+||+.+||.|+.+|+.+|||++
T Consensus 29 ~~le~~lgy~F~d~-----~LL~~AlTH~S~~~~~~neRLEfLGDaVL~l~vs~~L~~~~P~~~eg~Lt~~r~~lVs~~~ 103 (170)
T 3o2r_A 29 EKLEQSLTYEFKDK-----NLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKS 103 (170)
T ss_dssp HHHHHHHTCCCSSH-----HHHHHHTBCTTSSTTCCSHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHSSHHH
T ss_pred HHHHHHhCCCCCCH-----HHHHHHhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHCHHH
Confidence 57888999999876 8999999999998878999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCccccccccccCCCCcccCCCCCCCcccCccccccccccccccccccccchhHHHHHHHHHHHhhcCChHHH
Q 003062 496 LCKLGCDHKLPGFIRTEPFDPKMWMIPGDNSGSYELNDHSLFNERKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVG 575 (852)
Q Consensus 496 L~~~a~~~gL~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADv~EAliGA~yl~~G~~~a 575 (852)
|+++|.++||++||+.. ++.. . . .....+|++||+|||+|||+|+|+|++.|
T Consensus 104 La~ia~~lgL~~~l~~~---------~~~~----------~--------~-~~~~~~~ilad~fEAliGAiylD~G~~~a 155 (170)
T 3o2r_A 104 FAKIANSLNLGDFILMS---------VAEE----------N--------N-GGKEKPSILSDALEAIIGAIHLEAGFEFA 155 (170)
T ss_dssp HHHHHHHTTGGGTCBCC---------HHHH----------H--------T-TGGGCHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHcCcHHhhhcC---------cchh----------h--------c-CCCCcchHHHHHHHHHHHHHHHHCCHHHH
Confidence 99999999999999873 2210 0 0 11246899999999999999999999999
Q ss_pred HHhhhhc
Q 003062 576 LIFLDRI 582 (852)
Q Consensus 576 ~~~~~~l 582 (852)
.+|+..+
T Consensus 156 ~~~i~~~ 162 (170)
T 3o2r_A 156 KTIALRL 162 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998654
No 11
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.92 E-value=6.5e-26 Score=236.70 Aligned_cols=134 Identities=25% Similarity=0.366 Sum_probs=118.7
Q ss_pred HHHHHHHhhccccCCCCCHHHHHHHhccCCCCCCCCchhhhhhhhhHHhHHHHHHHHHhcCCCCcchhhHHHhhccccHH
Q 003062 416 VNLKNMLLDHCMQNVTIPTSKVLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAA 495 (852)
Q Consensus 416 ~~l~~~l~~~~~~~~~~~~~lll~AlT~~s~~~~~nyeRLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~vsN~~ 495 (852)
.+|+++|+|.|++. .++.+||||+|+....||||||||||+||+++++.+||.+||+.+||.||.+|+.+|||++
T Consensus 29 ~~le~~lgy~F~~~-----~LL~~AlTH~S~~~~~~neRLefLGDavL~~~v~~~L~~~~p~~~eg~Ls~~r~~lVs~~~ 103 (248)
T 3n3w_A 29 EKLEQSLTYEFKDK-----NLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKS 103 (248)
T ss_dssp HHHHHHHTCCCSSH-----HHHHHHTBCTTSBTTBCSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHSHHH
T ss_pred HHHHHHHCCCCCCH-----HHHHHHhcCcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHH
Confidence 56788999999876 8999999999998878999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCccccccccccCCCCcccCCCCCCCcccCccccccccccccccccccccchhHHHHHHHHHHHhhcCChHHH
Q 003062 496 LCKLGCDHKLPGFIRTEPFDPKMWMIPGDNSGSYELNDHSLFNERKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVG 575 (852)
Q Consensus 496 L~~~a~~~gL~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADv~EAliGA~yl~~G~~~a 575 (852)
|+++|.++||++||+.. ++. .. ..+ ...+|++||+|||+|||+|+|+|++.+
T Consensus 104 La~~a~~lgL~~~l~~~---------~~e----------~~-------~~g--~~~~~~lad~fEAliGAiyld~G~~~~ 155 (248)
T 3n3w_A 104 FAKIANSLNLGDFILMS---------VAE----------EN-------NGG--KEKPSILSDALEAIIGAIHLEAGFEFA 155 (248)
T ss_dssp HHHHHHHTTGGGTCBCC---------HHH----------HH-------TTG--GGCHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHcCcHHHhhcC---------chh----------hh-------cCC--CCCccHHHHHHHHHHHHHHHHCChHHH
Confidence 99999999999999873 211 00 011 246889999999999999999999999
Q ss_pred HHhhhhc
Q 003062 576 LIFLDRI 582 (852)
Q Consensus 576 ~~~~~~l 582 (852)
.+|+..+
T Consensus 156 ~~~i~~~ 162 (248)
T 3n3w_A 156 KTIALRL 162 (248)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 12
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.91 E-value=7.8e-25 Score=225.68 Aligned_cols=128 Identities=27% Similarity=0.336 Sum_probs=116.8
Q ss_pred HHHHHHHhhccccCCCCCHHHHHHHhccCCCCCCCCchhhhhhhhhHHhHHHHHHHHHhcCCCCcchhhHHHhhccccHH
Q 003062 416 VNLKNMLLDHCMQNVTIPTSKVLEAITTKKCQEGFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAA 495 (852)
Q Consensus 416 ~~l~~~l~~~~~~~~~~~~~lll~AlT~~s~~~~~nyeRLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~vsN~~ 495 (852)
.+|+++|+|.|++. .++.+||||+|+....||||||||||+||+++++.+||.+||+.+||.||.+|+.+|||++
T Consensus 5 ~~l~~~lg~~f~~~-----~ll~~AlTh~S~~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~ 79 (221)
T 2nug_A 5 EQLEKKLGYTFKDK-----SLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEF 79 (221)
T ss_dssp HHHHHHHTCCCSSH-----HHHHHHHBCTTTCSSSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHH
T ss_pred HHHHHHhCCCcCCH-----HHHHHHhCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHH
Confidence 46889999999875 8999999999998778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCccccccccccCCCCcccCCCCCCCcccCccccccccccccccccccccchhHHHHHHHHHHHhhcCChHH-
Q 003062 496 LCKLGCDHKLPGFIRTEPFDPKMWMIPGDNSGSYELNDHSLFNERKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENV- 574 (852)
Q Consensus 496 L~~~a~~~gL~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADv~EAliGA~yl~~G~~~- 574 (852)
|+++|.++||++||+.. ++. ..++++||+|||+|||+|+|+|.+.
T Consensus 80 la~~a~~l~l~~~l~~~---------~~~-------------------------~~~~~lad~~EAliGAiyld~g~~~~ 125 (221)
T 2nug_A 80 FNLLAQKLELHKFIRIK---------RGK-------------------------INETIIGDVFEALWAAVYIDSGRDAN 125 (221)
T ss_dssp HHHHHHTTTGGGTCBSC---------TTC-------------------------CCHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHcChHHhhccC---------CCc-------------------------ccchHHHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999862 222 1288999999999999999999999
Q ss_pred -HHHhhhhc
Q 003062 575 -GLIFLDRI 582 (852)
Q Consensus 575 -a~~~~~~l 582 (852)
+.+|+..+
T Consensus 126 ~~~~~i~~~ 134 (221)
T 2nug_A 126 FTRELFYKL 134 (221)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 99988765
No 13
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=99.91 E-value=2.6e-25 Score=228.61 Aligned_cols=134 Identities=22% Similarity=0.230 Sum_probs=108.3
Q ss_pred HHHHHHhhc-cccCCCCCHHHHHHHhccCCCCC-----------CCCchhhhhhhhhHHhHHHHHHHHHhcCCCCcchhh
Q 003062 417 NLKNMLLDH-CMQNVTIPTSKVLEAITTKKCQE-----------GFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLS 484 (852)
Q Consensus 417 ~l~~~l~~~-~~~~~~~~~~lll~AlT~~s~~~-----------~~nyeRLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls 484 (852)
.+++.|+|+ |++. .++.+||||+|+.. ..||||||||||+||++++|.+||.+||+.+||.||
T Consensus 87 ~lE~~lgY~~F~d~-----~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDaVL~l~vs~~L~~~~P~~~eG~Lt 161 (246)
T 3rv1_A 87 DVDMFIKYPVVYDE-----NLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLS 161 (246)
T ss_dssp GGGGGCSSCCCSCH-----HHHHHTTCCCC--------------CCCSHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHhcCCCCcCCH-----HHHHHHHcCCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHH
Confidence 456677887 7765 89999999999864 358999999999999999999999999999999999
Q ss_pred HHHhhccccHHHHHHHHhCCccccccccccCCCCcccCCCCCCCcccCccccccccccccccccccccchhHHHHHHHHH
Q 003062 485 VKKDRIISNAALCKLGCDHKLPGFIRTEPFDPKMWMIPGDNSGSYELNDHSLFNERKIYVTGRKKVKSKTVADVVEALIG 564 (852)
Q Consensus 485 ~~r~~~vsN~~L~~~a~~~gL~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADv~EAliG 564 (852)
.+|+.+|||++|+++|+++||++||+... +++. ...+...+|++||+|||+||
T Consensus 162 ~lRs~lVsn~~La~iA~~lgL~~~l~~~~-------g~~~--------------------~~~~~~~~~ilAD~fEAlIG 214 (246)
T 3rv1_A 162 QMKESIVNNNNLFDWSTKLNFTKRLQGNI-------ATPT--------------------RVVKDKMSKRYADCVQAYIG 214 (246)
T ss_dssp HHHHHHHSHHHHHHHHHHTTSHHHHCSSC-------C-------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHCCcHHHHhhcC-------CHhh--------------------hccCcccccHHHHHHHHHHH
Confidence 99999999999999999999999998520 1221 00112468999999999999
Q ss_pred HHhhcC---ChHHHHHhhhhc
Q 003062 565 AFLSTG---GENVGLIFLDRI 582 (852)
Q Consensus 565 A~yl~~---G~~~a~~~~~~l 582 (852)
|+|+|+ |++.+.+|+..+
T Consensus 215 AIylD~~g~~l~~v~~~l~~L 235 (246)
T 3rv1_A 215 ALVIDRFGTEFLDIKEWLEEL 235 (246)
T ss_dssp HHHHHHCSSTTHHHHHHHHHH
T ss_pred HHhHcCCCCCHHHHHHHHHHH
Confidence 999998 488999888654
No 14
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=99.91 E-value=1.5e-24 Score=230.12 Aligned_cols=155 Identities=19% Similarity=0.311 Sum_probs=115.6
Q ss_pred HHHHHHHhhccccCCCCCHHHHHHHhccCCCCCC---CCchhhhhhhhhHHhHHHHHHHHHhcCCCCcchhhHHHhhccc
Q 003062 416 VNLKNMLLDHCMQNVTIPTSKVLEAITTKKCQEG---FHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIIS 492 (852)
Q Consensus 416 ~~l~~~l~~~~~~~~~~~~~lll~AlT~~s~~~~---~nyeRLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~vs 492 (852)
.+|+++|+|.|++. .++.+||||+|+... .||||||||||+||+++++.+||.+||+.+||.||.+|+.+||
T Consensus 16 ~~le~~lgy~F~~~-----~LL~~AlTH~S~~~~~~~~~neRLEfLGDaVL~l~v~~~L~~~~p~~~~g~Lt~lrs~lV~ 90 (265)
T 3c4b_A 16 ETFEKKINYRFKNK-----AYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVN 90 (265)
T ss_dssp HHHHHHHTCCCSSH-----HHHHHHHBCTTCTTCCSSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHSS
T ss_pred HHHHHHhCCccCCH-----HHHHHHhcCcCcCCCCCCCchHhHHHHhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 46888999999876 899999999998653 4999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhCCccccccccccCCCCc----------ccCCCCCCCcccCcccccc-ccccccccccccccchhHHHHHH
Q 003062 493 NAALCKLGCDHKLPGFIRTEPFDPKMW----------MIPGDNSGSYELNDHSLFN-ERKIYVTGRKKVKSKTVADVVEA 561 (852)
Q Consensus 493 N~~L~~~a~~~gL~~~i~~~~f~~~~w----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~K~lADv~EA 561 (852)
|.+|+.+|+++||++||+... +..| .+.+..... ...+.. +... ........+|++||+|||
T Consensus 91 ~~~La~~a~~lgl~~~l~~~~--~~l~~~i~~f~~~~~~~~~~~~~----~~~l~~~~~~~-~~~~~~~~~~~laD~~EA 163 (265)
T 3c4b_A 91 NTIFASLAVKYDYHKYFKAVS--PELFHVIDDFVKFQLEKNEMQGM----DSELRRSEEDE-EKEEDIEVPKAMGDIFES 163 (265)
T ss_dssp HHHHHHHHHHTTGGGTCBCCC--HHHHHHHHHHHHHHHHHHC-----------------------CCSCCCHHHHHHHHH
T ss_pred hHHHHHHHHHcChHHHHHhcC--hhHHHHHHHHHHHHhhhhhhcch----hHHhhhcchhh-hhhcccccchHHHHHHHH
Confidence 999999999999999997421 0000 000000000 000000 0000 000112468999999999
Q ss_pred HHHHHhhcCCh--HHHHHhhhhc
Q 003062 562 LIGAFLSTGGE--NVGLIFLDRI 582 (852)
Q Consensus 562 liGA~yl~~G~--~~a~~~~~~l 582 (852)
||||+|+|+|. +.+.+|+..+
T Consensus 164 liGAiylD~G~~~~~~~~~i~~~ 186 (265)
T 3c4b_A 164 LAGAIYMDSGMSLEVVWQVYYPM 186 (265)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HhhheeeecCCCHHHHHHHHHHH
Confidence 99999999998 7788887654
No 15
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.90 E-value=6.9e-25 Score=260.02 Aligned_cols=165 Identities=21% Similarity=0.241 Sum_probs=139.1
Q ss_pred HHHhccCCCCCCCCCCcchhhhHhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhcChHHHHHHHHHcCCchhhhccCh
Q 003062 625 VEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQ 704 (852)
Q Consensus 625 ~~AlTH~S~~~~~~~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~~~Lt~~r~~lv~n~~La~~a~~~gL~~~l~~~~~ 704 (852)
++||||+||. ...|||||||||||||+++|++|||.+||++++|+||.+|+++|||++||.+|+++||+++|+.+..
T Consensus 320 ~~AlTh~s~~---~~~nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l~~~~~ 396 (756)
T 2qvw_A 320 RTPFGPFGVS---HTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSNN 396 (756)
T ss_dssp EEECBGGGBC---HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBCCSC
T ss_pred hhhccccccc---CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcChHHHhccCCC
Confidence 3478888875 2368999999999999999999999999999999999999999999999999999999999998765
Q ss_pred hHHHHHHHHHhhhhhhccccccCccccCCCChhhHHHHHHHhheeeee-CCCCHHHHHHHHHHhhcccCCcc---cccCC
Q 003062 705 ELYKWINITVDSFERLSLESTFGWESETSFPKALGDIIESLSGAIFVD-SGCNKEVVFESIRPLLEPMITPE---TMRLQ 780 (852)
Q Consensus 705 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~laD~~EAliGAi~~D-sG~~~~~v~~~~~~~l~~~~~~~---~~~~~ 780 (852)
+. ..+|++||+|||+|||||+| +|+ +.+++|+.+++.+.+... ....|
T Consensus 397 e~--------------------------~~~~ilaD~~EAliGAiylD~~G~--~~a~~~v~~~~~~~~~~~~~~~~~~D 448 (756)
T 2qvw_A 397 LV--------------------------AKSKTWADMYEEIVGSIFTGPNGI--YGCEEFLAKTLMSPEHSKTVGSACPD 448 (756)
T ss_dssp C----------------------------CCCCHHHHHHHHHHHHHHSTTHH--HHHHHHHHHHHBCGGGSCC---CCCH
T ss_pred CC--------------------------CcccHHHhHHHHHhCcccccccCh--HHHHHHHHHHHHhhhhcccccccccC
Confidence 32 35799999999999999999 886 689999999999887542 23468
Q ss_pred h-hhHHHHHHHhCCCceeeEEeeecCCceEEEEEEEECCEEEEeEEeeCCHHHHH---------HHHHHHHHHHhhhh
Q 003062 781 P-ARELNEYCQKHHFSMKKTVAPRINGKAAVTVEVHANGTLFKHTHADADKETAK---------KVASKEVLKSLKAS 848 (852)
Q Consensus 781 P-~~~L~e~~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak---------~~AA~~AL~~L~~~ 848 (852)
| ++.|+|++|+++. + .|.+.+...|| .+||+.||++|+..
T Consensus 449 p~Kt~LqE~~q~~~i---------------------------a-~~v~~~~~~ak~~~~~~~~~~~aa~~aL~~l~~~ 498 (756)
T 2qvw_A 449 AVTKASKRVCMGEAG---------------------------A-HEFRSLVDYACEQGISVFCSSRVSTMFLERLRDI 498 (756)
T ss_dssp HHHHHHHHHHTSCCC---------------------------H-HHHHHHHHHTTTTTCCCBSSSHHHHHHHHHHHHS
T ss_pred chHHHHHHHHhccch---------------------------h-hhhhhhhhHHhhhccccchhhHHHHHHHHhhccc
Confidence 8 9999999986552 1 45566777777 68999999888653
No 16
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.89 E-value=2.5e-24 Score=225.97 Aligned_cols=134 Identities=20% Similarity=0.225 Sum_probs=116.1
Q ss_pred HHHHHHHhhccccCCCCCHHHHHHHhccCCCCCC----C-----CchhhhhhhhhHHhHHHHHHHHHhcCCCCcchhhHH
Q 003062 416 VNLKNMLLDHCMQNVTIPTSKVLEAITTKKCQEG----F-----HLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVK 486 (852)
Q Consensus 416 ~~l~~~l~~~~~~~~~~~~~lll~AlT~~s~~~~----~-----nyeRLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~ 486 (852)
.+|+++|+|.|++. .++.+||||+|+... . ||||||||||+||+++++.+||.+||+.+||.||.+
T Consensus 22 ~~l~~~lgy~f~~~-----~LL~~AlTH~S~~~~~~~~~~~~~~~nerLefLGDavL~l~v~~~L~~~~p~~~eg~Ls~~ 96 (252)
T 1o0w_A 22 EEFQKETGINFKNE-----ELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARV 96 (252)
T ss_dssp HHHHHHHCCCCSSH-----HHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHH
T ss_pred HHHHHHHCCCCCCH-----HHHHHHhCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 56889999998775 899999999998542 2 999999999999999999999999999999999999
Q ss_pred HhhccccHHHHHHHHhCCccccccccccCCCCcccCCCCCCCcccCccccccccccccccccccccchhHHHHHHHHHHH
Q 003062 487 KDRIISNAALCKLGCDHKLPGFIRTEPFDPKMWMIPGDNSGSYELNDHSLFNERKIYVTGRKKVKSKTVADVVEALIGAF 566 (852)
Q Consensus 487 r~~~vsN~~L~~~a~~~gL~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADv~EAliGA~ 566 (852)
|+.+|||++|+++|.++||.+||+.. ++. ... .+ ...++++||+|||||||+
T Consensus 97 r~~lV~~~~la~~a~~lgL~~~l~~~---------~~e----------~~~-------~~--~~~~~~lad~~EAliGAi 148 (252)
T 1o0w_A 97 KSAAASEEVLAMVSRKMNLGKFLFLG---------KGE----------EKT-------GG--RDRDSILADAFEALLAAI 148 (252)
T ss_dssp HHHHTSHHHHHHHHHHTTHHHHCBCC---------HHH----------HHT-------TG--GGCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHcCcHHhhccC---------chh----------hhc-------CC--CCCccHHHhHHHHHHHHH
Confidence 99999999999999999999999862 111 000 11 146899999999999999
Q ss_pred hhcCChHHHHHhhhhc
Q 003062 567 LSTGGENVGLIFLDRI 582 (852)
Q Consensus 567 yl~~G~~~a~~~~~~l 582 (852)
|+|+|.+.+.+|+..+
T Consensus 149 yld~g~~~~~~~i~~~ 164 (252)
T 1o0w_A 149 YLDQGYEKIKELFEQE 164 (252)
T ss_dssp HHHHCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 9999999999998765
No 17
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.89 E-value=3.4e-24 Score=223.99 Aligned_cols=133 Identities=23% Similarity=0.238 Sum_probs=115.1
Q ss_pred HHHHHHHhhccccCCCCCHHHHHHHhccCCCCC----CCCchhhhhhhhhHHhHHHHHHHHHhcCCCCcchhhHHHhhcc
Q 003062 416 VNLKNMLLDHCMQNVTIPTSKVLEAITTKKCQE----GFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRII 491 (852)
Q Consensus 416 ~~l~~~l~~~~~~~~~~~~~lll~AlT~~s~~~----~~nyeRLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v 491 (852)
.+|+++|+|.| +. .++.+||||+|+.. ..||||||||||+||+++++.+||.+||+.+||.||.+|+.+|
T Consensus 8 ~~l~~~lgy~f-~~-----~ll~~AlTH~S~~~~~~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV 81 (242)
T 2a11_A 8 QPLLDALGVDL-PD-----ELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVV 81 (242)
T ss_dssp HHHHHHHTSCC-CH-----HHHHHHTBCHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCC-CH-----HHHHHHhCCcCccccCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 45888999988 65 89999999999853 3699999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhC---CccccccccccCCCCcccCCCCCCCcccCccccccccccccccccccccchhHHHHHHHHHHHhh
Q 003062 492 SNAALCKLGCDH---KLPGFIRTEPFDPKMWMIPGDNSGSYELNDHSLFNERKIYVTGRKKVKSKTVADVVEALIGAFLS 568 (852)
Q Consensus 492 sN~~L~~~a~~~---gL~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADv~EAliGA~yl 568 (852)
||++|+++|.++ ||++||+.. ++. .. ..+ ...+|++||+|||+|||+|+
T Consensus 82 ~~~~la~~a~~l~~~gL~~~l~~~---------~~e----------~~-------~~~--~~~~~~lad~~EAliGAiyl 133 (242)
T 2a11_A 82 NTQALADVARRLCAEGLGVHVLLG---------RGE----------AN-------TGG--ADKSSILADGMESLLGAIYL 133 (242)
T ss_dssp SHHHHHHHHHHHSSSCSGGGCBCC---------HHH----------HH-------TTG--GGCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhhhChHHHhhcC---------chh----------hh-------cCC--CCCccHHHHHHHHHHHHHHh
Confidence 999999999999 999999863 111 00 011 13589999999999999999
Q ss_pred cCChHHHHHhhhhc
Q 003062 569 TGGENVGLIFLDRI 582 (852)
Q Consensus 569 ~~G~~~a~~~~~~l 582 (852)
|+|.+.+.+|+..+
T Consensus 134 d~g~~~~~~~i~~~ 147 (242)
T 2a11_A 134 QHGMEKAREVILRL 147 (242)
T ss_dssp HHCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999998765
No 18
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=99.88 E-value=1.2e-23 Score=227.77 Aligned_cols=133 Identities=23% Similarity=0.238 Sum_probs=111.8
Q ss_pred HHHHHhhc-cccCCCCCHHHHHHHhccCCCCCC-----------CCchhhhhhhhhHHhHHHHHHHHHhcCCCCcchhhH
Q 003062 418 LKNMLLDH-CMQNVTIPTSKVLEAITTKKCQEG-----------FHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSV 485 (852)
Q Consensus 418 l~~~l~~~-~~~~~~~~~~lll~AlT~~s~~~~-----------~nyeRLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~ 485 (852)
+++.|+|+ |++. .++.+||||+|+... .||||||||||+||+++++.+||.+||+.+||.||.
T Consensus 88 lE~~igy~~F~d~-----~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDavL~l~vs~~L~~~~P~~~eG~Lt~ 162 (341)
T 3rv0_A 88 VDMFIKYPVVYDE-----NLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQ 162 (341)
T ss_dssp TGGGCSSCCCSCH-----HHHHHHHCCCCCC---CCSCHHHHGGGCTHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred HHHhcCCCCcCCH-----HHHHHHhcCcCccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHH
Confidence 56667777 7665 899999999998642 489999999999999999999999999999999999
Q ss_pred HHhhccccHHHHHHHHhCCccccccccccCCCCcccCCCCCCCcccCccccccccccccccccccccchhHHHHHHHHHH
Q 003062 486 KKDRIISNAALCKLGCDHKLPGFIRTEPFDPKMWMIPGDNSGSYELNDHSLFNERKIYVTGRKKVKSKTVADVVEALIGA 565 (852)
Q Consensus 486 ~r~~~vsN~~L~~~a~~~gL~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~lADv~EAliGA 565 (852)
+|+.+|||.+|+++|.++||++||+.. .+++. ...+...++++||+|||+|||
T Consensus 163 lr~~lVs~~~La~iA~~lgL~~~l~~~-------~g~~~--------------------~~~~~~~~~ilaD~fEAlIGA 215 (341)
T 3rv0_A 163 MKESIVNNNNLFDWSTKLNFTKRLQGN-------IATPT--------------------RVVKDKMSKRYADCVEAYIGA 215 (341)
T ss_dssp HHHHHHSHHHHHHHHHHTTTTTTTCCS-------SCCC------------------------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHcCcHHHhhhc-------CChhh--------------------hccCCccccHHHHHHHHHHHH
Confidence 999999999999999999999999852 01111 001113689999999999999
Q ss_pred HhhcC---ChHHHHHhhhhc
Q 003062 566 FLSTG---GENVGLIFLDRI 582 (852)
Q Consensus 566 ~yl~~---G~~~a~~~~~~l 582 (852)
+|+|+ |++.+.+|+..+
T Consensus 216 IylD~~~~G~~~a~~fi~~l 235 (341)
T 3rv0_A 216 LVIDRFGTEFLDIKEWLEEL 235 (341)
T ss_dssp HHHHHCSSTTHHHHHHHHHH
T ss_pred HhhcCccCCHHHHHHHHHHH
Confidence 99998 999999998754
No 19
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=99.76 E-value=6e-19 Score=156.45 Aligned_cols=67 Identities=37% Similarity=0.691 Sum_probs=60.4
Q ss_pred cccCCCeEEE-----cCCeEEEEEEcCCCCCCccc--cccCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCccccc
Q 003062 32 YFKPTPKFDI-----NKEMGICTLYLPNNCPIQTV--IAQGNIKTLKQTACLEACKKLHQIGALTDNLLPDVVVE 99 (852)
Q Consensus 32 ~~~~~P~~~~-----~~~~~~~~v~LP~~~p~~~~--~~~~s~~~Ak~~aAf~Ac~~L~~~G~ldd~LlP~~~~~ 99 (852)
|++++|+|.+ .++.| |+|+||.|+|++.+ .+|+||++|||+|||+||++||++|+|||||+|..+++
T Consensus 22 ~~~~~P~~~~~~~~~~~~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~L~~~G~Ldd~LlP~~~~~ 95 (102)
T 2kou_A 22 FFQPKPEFQFKPVDEFGGTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNLGVLNDFLLPDSKDE 95 (102)
T ss_dssp TCCSSCEEEEEECCGGGCEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHHHHHHCSCTTTSCCHHHHC
T ss_pred ccCccceEEEeEeecCCCeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHHHHHCCCCccccCCCCCcc
Confidence 7789999995 24567 99999999999987 88999999999999999999999999999999987543
No 20
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=99.70 E-value=1.7e-17 Score=154.47 Aligned_cols=105 Identities=16% Similarity=0.123 Sum_probs=87.9
Q ss_pred CCCchhhhhhhhhHHhHHHHHHHHHhcCCCCcchhhHHHhhccccHHHHHHHHhC----Ccc----ccccccccCCCCcc
Q 003062 449 GFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDH----KLP----GFIRTEPFDPKMWM 520 (852)
Q Consensus 449 ~~nyeRLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~vsN~~L~~~a~~~----gL~----~~i~~~~f~~~~w~ 520 (852)
..|.|||||||||||.++++.+||.. |..+||.||.+|+.+||-+.+++++.++ +|. .+++.
T Consensus 9 ~~~~erLefLGDAVlel~vr~~L~~~-~~~~eg~L~k~r~~~V~a~aqa~~~~~l~~~~~L~eeE~~~~r~--------- 78 (138)
T 1u61_A 9 QLNSLALAYMGDAVYEQYIRYHLLQK-GKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRR--------- 78 (138)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHH-CCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHH---------
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHcCHHHHHHHHHHhhcccCCChHHHHHhhc---------
Confidence 46999999999999999999999999 8889999999999999999999999999 887 57764
Q ss_pred cCCCCCCCcccCccccccccccccccccccccch----hHHHHHHHHHHHhhcCChHHHHHhhhhc
Q 003062 521 IPGDNSGSYELNDHSLFNERKIYVTGRKKVKSKT----VADVVEALIGAFLSTGGENVGLIFLDRI 582 (852)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~----lADv~EAliGA~yl~~G~~~a~~~~~~l 582 (852)
+.+.. .........+ +||+|||||||+|+++|.+.+..|+.++
T Consensus 79 Grn~~-------------------~~~~~k~~si~~Yr~A~~fEALiGalYLd~g~er~~~~i~~~ 125 (138)
T 1u61_A 79 GRNAN-------------------SGTVPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKA 125 (138)
T ss_dssp HTCCC-------------------SSCCCTTCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCcc-------------------cCCCCCCCchhhhhhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 22221 0001123456 9999999999999999999999998764
No 21
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=99.69 E-value=1.8e-17 Score=154.34 Aligned_cols=107 Identities=17% Similarity=0.117 Sum_probs=88.9
Q ss_pred CCcchhhhHhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhcChHHHHHHHHHc----CCc----hhhhccChhHHHHH
Q 003062 639 PRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKH----GLH----KHILHASQELYKWI 710 (852)
Q Consensus 639 ~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~~~Lt~~r~~lv~n~~La~~a~~~----gL~----~~l~~~~~~~~~~i 710 (852)
..|.+||||||||||+++|.+|||.+ |..++|.||.+|+.+||.+.+|.++.++ +|. .+++.+...-.
T Consensus 9 ~~~~erLefLGDAVlel~vr~~L~~~-~~~~eg~L~k~r~~~V~a~aqa~~~~~l~~~~~L~eeE~~~~r~Grn~~~--- 84 (138)
T 1u61_A 9 QLNSLALAYMGDAVYEQYIRYHLLQK-GKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNANS--- 84 (138)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHH-CCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHHTCCCS---
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHcCHHHHHHHHHHhhcccCCChHHHHHhhcCCCccc---
Confidence 35899999999999999999999999 8889999999999999999999999999 886 56665443210
Q ss_pred HHHHhhhhhhccccccCccccCCCChh----hHHHHHHHhheeeeeCCCCHHHHHHHHHHhhc
Q 003062 711 NITVDSFERLSLESTFGWESETSFPKA----LGDIIESLSGAIFVDSGCNKEVVFESIRPLLE 769 (852)
Q Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~k~----laD~~EAliGAi~~DsG~~~~~v~~~~~~~l~ 769 (852)
.. ....+.+ +||.|||+|||||+|.|. +.+.+|+..++.
T Consensus 85 --------------~~----~~k~~si~~Yr~A~~fEALiGalYLd~g~--er~~~~i~~~~~ 127 (138)
T 1u61_A 85 --------------GT----VPKNTDVQTYRHSTAFEALIGYHHLLNNR--ERLDEIVYKAIA 127 (138)
T ss_dssp --------------SC----CCTTCCHHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH
T ss_pred --------------CC----CCCCCchhhhhhhhHHHHHHHHHHHCCCH--HHHHHHHHHHHH
Confidence 00 1334568 999999999999999976 578888877764
No 22
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=99.58 E-value=8.1e-16 Score=142.85 Aligned_cols=115 Identities=17% Similarity=0.117 Sum_probs=84.2
Q ss_pred CCcchhhhHhhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHhcChHHHHHHHHHcCCchhhhccChhHHHHHHHHHhhhh
Q 003062 639 PRCYQRLEFLGDAVLDYLITVYLYNKYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFE 718 (852)
Q Consensus 639 ~~~yeRLEfLGDavLd~~v~~~l~~~~p~~~~~~Lt~~r~~lv~n~~La~~a~~~gL~~~l~~~~~~~~~~i~~~~~~~~ 718 (852)
..|.+|||||||||++++|.+||+.+ |. ++|.||.+++.+||.+.+|.++.+++ .++ +..+. .+++.
T Consensus 12 ~~~~~~LefLGDAVleL~vr~~L~~~-~~-~~g~L~k~~~~~V~a~aqa~~~~~l~--~~L--te~E~-----~~~rr-- 78 (137)
T 2gsl_A 12 DYSGLELAFLGDAIWELEIRKYYLQF-GY-NIPTLNKYVKAKVNAKYQSLIYKKII--NDL--DEEFK-----VIGKR-- 78 (137)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTS-CB-CHHHHHHHHHHHHSHHHHHHHHHHHG--GGS--CHHHH-----HHHHH--
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHhCHHHHHHHHHHHH--HHh--CHHHH-----HHHHh--
Confidence 35899999999999999999999998 88 99999999999999999999999983 221 11111 01110
Q ss_pred hhccccccCccccCCCCh----hhHHHHHHHhheeeeeCCCCHHHHHHHHHHhhcccC
Q 003062 719 RLSLESTFGWESETSFPK----ALGDIIESLSGAIFVDSGCNKEVVFESIRPLLEPMI 772 (852)
Q Consensus 719 ~~~~~~~~~~~~~~~~~k----~laD~~EAliGAi~~DsG~~~~~v~~~~~~~l~~~~ 772 (852)
.+...+. .....++ .+||.|||+|||+|+|.|. +.+.+++..++.-.+
T Consensus 79 Grna~~~----~~~k~~si~~Y~~At~fEALiGaLYLd~~~--erl~~ll~~~~~~~~ 130 (137)
T 2gsl_A 79 AKNSNIK----TFPRSCTVMEYKEATALEAIIGAMYLLKKE--EEIKKIINIVIKGEL 130 (137)
T ss_dssp HHC--CC----SCCSSSCHHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHTTC
T ss_pred cccccCC----CCCCCCChHHHHHhhHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHH
Confidence 0000000 0122344 4999999999999999876 588889888876444
No 23
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=99.58 E-value=6.8e-16 Score=143.38 Aligned_cols=105 Identities=13% Similarity=0.031 Sum_probs=82.8
Q ss_pred CCCchhhhhhhhhHHhHHHHHHHHHhcCCCCcchhhHHHhhccccHHHHHHHHhCC--cc----ccccccccCCCCcccC
Q 003062 449 GFHLESLETLGDSFLKYAASQQLFKTYQNHHEGLLSVKKDRIISNAALCKLGCDHK--LP----GFIRTEPFDPKMWMIP 522 (852)
Q Consensus 449 ~~nyeRLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~vsN~~L~~~a~~~g--L~----~~i~~~~f~~~~w~~~ 522 (852)
..|.+|||||||||+.++++.+||.. |. +||.||..|..+||-+.+++++.+++ |. .+++. +.
T Consensus 12 ~~~~~~LefLGDAVleL~vr~~L~~~-~~-~~g~L~k~~~~~V~a~aqa~~~~~l~~~Lte~E~~~~rr---------Gr 80 (137)
T 2gsl_A 12 DYSGLELAFLGDAIWELEIRKYYLQF-GY-NIPTLNKYVKAKVNAKYQSLIYKKIINDLDEEFKVIGKR---------AK 80 (137)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTS-CB-CHHHHHHHHHHHHSHHHHHHHHHHHGGGSCHHHHHHHHH---------HH
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHhCHHHHHHHHHHHHHHhCHHHHHHHHh---------cc
Confidence 46999999999999999999999998 88 99999999999999999999999884 33 22222 11
Q ss_pred CCCCCCcccCccccccccccccccccccccc----hhHHHHHHHHHHHhhcCChHHHHHhhhhcC
Q 003062 523 GDNSGSYELNDHSLFNERKIYVTGRKKVKSK----TVADVVEALIGAFLSTGGENVGLIFLDRIG 583 (852)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K----~lADv~EAliGA~yl~~G~~~a~~~~~~l~ 583 (852)
+.. .++...... .+||+|||||||+|+++|.+.+..++.++.
T Consensus 81 na~-------------------~~~~~k~~si~~Y~~At~fEALiGaLYLd~~~erl~~ll~~~~ 126 (137)
T 2gsl_A 81 NSN-------------------IKTFPRSCTVMEYKEATALEAIIGAMYLLKKEEEIKKIINIVI 126 (137)
T ss_dssp C---------------------CCSCCSSSCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccc-------------------CCCCCCCCChHHHHHhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 110 001011233 499999999999999999999999988753
No 24
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X*
Probab=99.56 E-value=1.7e-15 Score=139.29 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=75.2
Q ss_pred cccccCcEEEcCcCCceEEEEeecCCCCCCCCCCCCCCCcchHHHHHHHHhCcccccCCceeEEEeeccccccccchhhh
Q 003062 287 TCMIYNSVVCTPHSGQIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLCFDQELLLNGRRIFHAQNYLSKCRQ 366 (852)
Q Consensus 287 ~~~~~~~~V~~~~~~~~Y~v~~i~~dl~p~S~f~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~~~r~N~L~~~~~ 366 (852)
.+.++|.+|+++|+|+.|+|++|+|+++|.|+|+..++..+||.+||++|||+.|.+++||||+++...+..+
T Consensus 25 ~k~l~G~~V~t~ynnk~YrI~~I~~~~~p~s~F~~~dg~~~T~~eYyk~kY~i~I~~~~QPLL~~~~k~~~~~------- 97 (124)
T 3o7v_X 25 SKELIGLVVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITDLKQPMLVSQPKRRRGP------- 97 (124)
T ss_dssp HHHHTTCEEEETTSSCEEECCEEETTCCTTCEEECTTSCEEEHHHHHHHHHCCCCCCSSCCEEEECCC------------
T ss_pred HHHcCCCEEEEeeCCeEEEEeeeCCCCCccCcccCCCCCeeeHHHHHHHHhCceecCCCcceEEEeeecccCC-------
Confidence 5669999999999999999999999999999998766778999999999999999999999999984322111
Q ss_pred hccCCCCcceeecCcchhhhhcccCcHHH
Q 003062 367 EKQREPSKISFELPPELCRIIMGPMSLST 395 (852)
Q Consensus 367 ~~~~~~~~~~~~L~PElC~~~~~p~~~~~ 395 (852)
.......++||||||.+ ..++.++
T Consensus 98 ---~~~~~~~iyLipELC~l--tGltd~~ 121 (124)
T 3o7v_X 98 ---GGTLPGPAMLIPELCYL--TGLTDKM 121 (124)
T ss_dssp --------CCEEECGGGEEC--CCCC---
T ss_pred ---CCCCcceEEechhheec--cCCChHh
Confidence 01112347899999965 5665443
No 25
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A
Probab=99.48 E-value=2.3e-14 Score=136.07 Aligned_cols=98 Identities=26% Similarity=0.277 Sum_probs=74.4
Q ss_pred cccccCcEEEcCcCCceEEEEeecCCCCCCCCCCCCCCCcchHHHHHHHHhCcccccCCceeEEEeeccccccccchhhh
Q 003062 287 TCMIYNSVVCTPHSGQIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLCFDQELLLNGRRIFHAQNYLSKCRQ 366 (852)
Q Consensus 287 ~~~~~~~~V~~~~~~~~Y~v~~i~~dl~p~S~f~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~~~r~N~L~~~~~ 366 (852)
...++|.+|+|.|+|+.|.|++|+|+++|.|+|+..++..+||.+||+++||+.|.+++||||+++...+..+
T Consensus 25 ~k~l~g~~V~t~ynnk~YrI~~I~~~~~p~s~F~~~dg~~iT~~eYf~~kY~i~I~~~~qPlL~~~~k~~~~~------- 97 (148)
T 3qir_A 25 TKLLVGNIVITRYNNRTYRIDDVDWNKTPKDSFTMSDGKEITFLEYYSKNYGITVKEEDQPLLIHRPSERQDN------- 97 (148)
T ss_dssp HHHHTTCEEEETTTCCEEECCEEETTCCTTSEEECTTSCEEEHHHHHHHHHCCCCSCTTCCEEEECCTTCCCC-------
T ss_pred HHHcCCCEEEEccCCcEEEEeeecCCCCcCccccCCCCCcccHHHHHHHHcCCeecCCCCceEEeecccccCC-------
Confidence 4568999999999999999999999999999999777778999999999999999999999999985332110
Q ss_pred hccCCCCcceeecCcchhhhhcccCcHHH
Q 003062 367 EKQREPSKISFELPPELCRIIMGPMSLST 395 (852)
Q Consensus 367 ~~~~~~~~~~~~L~PElC~~~~~p~~~~~ 395 (852)
.+ ......++||||||.+ .+++.++
T Consensus 98 -~~-~~~~~~~yL~pELC~l--tgLtd~~ 122 (148)
T 3qir_A 98 -HG-MLLKGEILLLPELSFM--TGIPEKM 122 (148)
T ss_dssp -----CCSCCEEECGGGEEC--C------
T ss_pred -CC-CCccceeeecHHHhhh--cCCCHHH
Confidence 00 1112347899999965 4554444
No 26
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus}
Probab=99.46 E-value=4.5e-14 Score=135.38 Aligned_cols=99 Identities=16% Similarity=0.205 Sum_probs=76.8
Q ss_pred cccccCcEEEcCcCCceEEEEeecCCCCCCCCCCCCCCCcchHHHHHHHHhCcccccCCceeEEEeeccccccccchhhh
Q 003062 287 TCMIYNSVVCTPHSGQIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLCFDQELLLNGRRIFHAQNYLSKCRQ 366 (852)
Q Consensus 287 ~~~~~~~~V~~~~~~~~Y~v~~i~~dl~p~S~f~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~~~r~N~L~~~~~ 366 (852)
...++|.+|.+.|+|++|+|++|+++.+|.|+|+..++..+||.+||+++||+.|.+++||+|++....+..+
T Consensus 26 ~~~l~g~~V~t~y~nr~yrI~~i~~~~~p~~~F~~~~g~~~T~~eYf~~~Y~i~i~~~~qPlL~~~~~~~~~~------- 98 (150)
T 2xfm_A 26 SKELIGLIVLTKYNNKTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITDLKQPVLVSQPKRRRGP------- 98 (150)
T ss_dssp HHHHTTCEEEETTTTEEEECCEEETTCCTTCCCCSSSSCCCCHHHHHHTTCCCCCCCSSSCEEEECSSCTTCC-------
T ss_pred HHHhCCcEEEEeeCCceEEeeecCCCCCccCeeecCCCceeeHHHHHHHHcCCccCCCCCCeEEecccccccc-------
Confidence 4568999999999999999999999999999998666678999999999999999999999999975432110
Q ss_pred hccCCCCcceeecCcchhhhhcccCcHHHHH
Q 003062 367 EKQREPSKISFELPPELCRIIMGPMSLSTFY 397 (852)
Q Consensus 367 ~~~~~~~~~~~~L~PElC~~~~~p~~~~~~~ 397 (852)
+ ......++||||||.+ .+++.++..
T Consensus 99 --~-~~~~~~~~LppELC~i--~~L~d~~rs 124 (150)
T 2xfm_A 99 --G-GTLPGPAMLIPELCYL--TGLTDKMRN 124 (150)
T ss_dssp --S-SCSSCCEEECGGGEEE--CSTTC----
T ss_pred --c-ccccceEEecHHHhcc--CCCCHHHHh
Confidence 0 1111347899999965 566666653
No 27
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=99.09 E-value=4.1e-10 Score=97.11 Aligned_cols=72 Identities=14% Similarity=0.125 Sum_probs=58.7
Q ss_pred ccCChhhHHHHHHHhCCCc-eeeEEeeecC--CceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhhhCC
Q 003062 777 MRLQPARELNEYCQKHHFS-MKKTVAPRIN--GKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKASFP 850 (852)
Q Consensus 777 ~~~~P~~~L~e~~~~~~~~-~~~~~~~~~~--g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~~~~ 850 (852)
...||++.|+||||+.++. +.|+.+...+ ....|+|+|+|+|. ++ .|.|.|||+||+.||+.||+.|....|
T Consensus 13 ~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~-~G~G~SKK~Aeq~AA~~AL~~L~~~p~ 87 (88)
T 3adl_A 13 RGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IE-IGSGTSKKLAKRNAAAKMLLRVHTVPL 87 (88)
T ss_dssp TTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EE-EEEESSHHHHHHHHHHHHHHHHHC---
T ss_pred CCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EE-EEeeCCHHHHHHHHHHHHHHHHHccCC
Confidence 3479999999999999886 4587444333 36889999999997 76 899999999999999999999986554
No 28
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=99.05 E-value=6.4e-10 Score=91.69 Aligned_cols=64 Identities=25% Similarity=0.370 Sum_probs=54.9
Q ss_pred hhhHHHHHHHhCCCce-eeEEeeecC--CceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhh
Q 003062 781 PARELNEYCQKHHFSM-KKTVAPRIN--GKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLK 846 (852)
Q Consensus 781 P~~~L~e~~~~~~~~~-~~~~~~~~~--g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~ 846 (852)
|++.|+||||+.++.. .|..+...+ +...|+|+|+++|. ++ .|.|.|||+|++.||+.||+.|+
T Consensus 2 p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~-~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VE-TGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EE-EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EE-EeecCCHHHHHHHHHHHHHHHHh
Confidence 8999999999998864 587444333 35789999999998 76 89999999999999999999986
No 29
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=99.05 E-value=6.6e-10 Score=95.92 Aligned_cols=71 Identities=21% Similarity=0.234 Sum_probs=59.0
Q ss_pred CChhhHHHHHHHhCCCceeeEEeeecCCce-EEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhhhCC
Q 003062 779 LQPARELNEYCQKHHFSMKKTVAPRINGKA-AVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKASFP 850 (852)
Q Consensus 779 ~~P~~~L~e~~~~~~~~~~~~~~~~~~g~~-~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~~~~ 850 (852)
.||++.|+||||+++..+.|......++.. .|+|.|+|+|+.++ .|.|.|||+|++.||+.||+.|....|
T Consensus 6 ~d~Kt~LqE~~Q~~~~~~~Y~~~~Gp~H~~~~F~~~v~v~g~~~~-~G~G~SKK~Aeq~AA~~AL~~L~~~~~ 77 (88)
T 1x48_A 6 SGYIGLVNSFAQKKKLSVNYEQCEPNSELPQRFICKCKIGQTMYG-TGSGVTKQEAKQLAAKEAYQKLLKSPP 77 (88)
T ss_dssp SCHHHHHHHHHHHTTCCEEEEECCCSSSSSCCEEEEEEESSCEEE-EEEESSHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHcCCCCeeEEeeCCCCCCceEEEEEEECCEEEE-EeecCCHHHHHHHHHHHHHHHHHhcCC
Confidence 589999999999998877776111122345 69999999998887 899999999999999999999987654
No 30
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=99.03 E-value=6.2e-10 Score=93.56 Aligned_cols=68 Identities=19% Similarity=0.204 Sum_probs=58.0
Q ss_pred CChhhHHHHHHHhCCCce-eeEEeeec--CCceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhh
Q 003062 779 LQPARELNEYCQKHHFSM-KKTVAPRI--NGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKA 847 (852)
Q Consensus 779 ~~P~~~L~e~~~~~~~~~-~~~~~~~~--~g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~ 847 (852)
.||++.|+||||+.+... .|..+... ++...|+|.|+++|+.++ .|.|.|||+|++.||+.||+.|..
T Consensus 4 ~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~-~G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYT-GAATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEE-CCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEE-EeccCCHHHHHHHHHHHHHHHHhh
Confidence 479999999999998864 58744433 346899999999999887 899999999999999999999863
No 31
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.03 E-value=1e-09 Score=94.85 Aligned_cols=70 Identities=16% Similarity=0.223 Sum_probs=59.1
Q ss_pred cCChhhHHHHHHHhCCCce-eeEEeeec--CCceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhhhC
Q 003062 778 RLQPARELNEYCQKHHFSM-KKTVAPRI--NGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKASF 849 (852)
Q Consensus 778 ~~~P~~~L~e~~~~~~~~~-~~~~~~~~--~g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~~~ 849 (852)
..||++.|+||||+.++.. .|..+... +....|+|+|+|+|. ++ .|.|.|||+||+.||+.||+.|....
T Consensus 15 ~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~-~G~G~SKK~Aeq~AA~~AL~~L~~~s 87 (89)
T 2cpn_A 15 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IE-IGSGTSKKLAKRNAAAKMLLRVSGPS 87 (89)
T ss_dssp CCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EE-EEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EE-EeeeCCHHHHHHHHHHHHHHHHHhhc
Confidence 4699999999999988864 58744433 346789999999998 76 89999999999999999999997554
No 32
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=99.01 E-value=1e-09 Score=95.29 Aligned_cols=70 Identities=23% Similarity=0.162 Sum_probs=55.7
Q ss_pred ccCChhhHHHHHHHhCCCceeeEEeeecC--CceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhhh
Q 003062 777 MRLQPARELNEYCQKHHFSMKKTVAPRIN--GKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKAS 848 (852)
Q Consensus 777 ~~~~P~~~L~e~~~~~~~~~~~~~~~~~~--g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~~ 848 (852)
...||++.|+||||+.+..+.|..+...+ +...|+|+|+|+|+ ++ .|.|.|||+||+.||+.||+.|...
T Consensus 12 ~~kd~Ks~LqE~~q~~~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~-~G~G~SKK~Aeq~AA~~aL~~L~~~ 83 (90)
T 3llh_A 12 PGKTPISLLQEYGTRIGKTPVYDLLKAEGQAHQPNFTFRVTVGDT-SC-TGQGPSKKAAKHKAAEVALKHLKGG 83 (90)
T ss_dssp -CCCHHHHHHHHHHHTTCCCEEEEEEEC-----CCEEEEEEETTE-EE-EEEESSHHHHHHHHHHHHHHHHC--
T ss_pred cCCCHHHHHHHHHHhcCCCCEEEEEEeECCCCCCcEEEEEEECCE-EE-EEEeCCHHHHHHHHHHHHHHHHHhc
Confidence 45799999999999887666687444332 35789999999998 55 8999999999999999999999754
No 33
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=99.00 E-value=1.1e-09 Score=91.27 Aligned_cols=67 Identities=18% Similarity=0.240 Sum_probs=57.1
Q ss_pred CChhhHHHHHHHhCCCce-eeEEeee-cCCceEEEEEEEECCEEEEeEEee-CCHHHHHHHHHHHHHHHhh
Q 003062 779 LQPARELNEYCQKHHFSM-KKTVAPR-INGKAAVTVEVHANGTLFKHTHAD-ADKETAKKVASKEVLKSLK 846 (852)
Q Consensus 779 ~~P~~~L~e~~~~~~~~~-~~~~~~~-~~g~~~~~~~v~v~~~~i~~~g~g-~s~k~Ak~~AA~~AL~~L~ 846 (852)
.||++.|+||||+.++.. .|..+.. .++...|+|.|+|+|+.++ .|.| .|+|+|++.||+.||+.|+
T Consensus 3 ~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~-~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 3 HVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYN-SLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp CSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEE-CCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEE-eeeccCCHHHHHHHHHHHHHHHhh
Confidence 589999999999998864 4874432 2236789999999999887 8999 9999999999999999986
No 34
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=99.00 E-value=1.2e-09 Score=96.32 Aligned_cols=70 Identities=19% Similarity=0.144 Sum_probs=60.1
Q ss_pred cCChhhHHHHHHHhCCCce-eeEEeeecCCceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhhh
Q 003062 778 RLQPARELNEYCQKHHFSM-KKTVAPRINGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKAS 848 (852)
Q Consensus 778 ~~~P~~~L~e~~~~~~~~~-~~~~~~~~~g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~~ 848 (852)
..||++.|+||||+++... .|..+...+....|+|.|+++|+.++ .|.|.|||+|++.||+.||+.|...
T Consensus 15 ~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~~~F~~~V~v~g~~~~-~G~G~SKK~Aeq~AA~~AL~~L~~~ 85 (98)
T 1x47_A 15 GKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYG-SGTASSKKLAKNKAARATLEILIPD 85 (98)
T ss_dssp CCCHHHHHHHHHHHHTCSCCEEEEEECSSSSCCEEEEEEETTEEEE-EEEESSHHHHHHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEEeECCCCcEEEEEEECCEEEE-EeeeCCHHHHHHHHHHHHHHHHHhh
Confidence 4799999999999988864 58755444445789999999999887 8999999999999999999999754
No 35
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=98.98 E-value=1.6e-09 Score=92.73 Aligned_cols=69 Identities=22% Similarity=0.150 Sum_probs=57.8
Q ss_pred cCChhhHHHHHHHhCCCceeeEEeeec--CCceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhhh
Q 003062 778 RLQPARELNEYCQKHHFSMKKTVAPRI--NGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKAS 848 (852)
Q Consensus 778 ~~~P~~~L~e~~~~~~~~~~~~~~~~~--~g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~~ 848 (852)
..||++.|+||||+.+..+.|..+... ++...|+|.|+++| .++ .|.|.|||+||+.||+.||+.|...
T Consensus 7 ~~d~Ks~LqE~~q~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~-~G~G~SKK~Aeq~AA~~aL~~L~~~ 77 (84)
T 2dix_A 7 GKTPIQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGD-ITC-TGEGTSKKLAKHRAAEAAINILKAN 77 (84)
T ss_dssp CCCHHHHHHHHHHHTTCCCEEEEEEEECSSSSCEEEEEEEETT-EEE-EECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEEEeECCCCCCeEEEEEEECC-EEE-EeeeCCHHHHHHHHHHHHHHHHhcc
Confidence 369999999999988754558744433 34688999999999 676 8999999999999999999999754
No 36
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=98.97 E-value=8.7e-10 Score=96.89 Aligned_cols=71 Identities=18% Similarity=0.140 Sum_probs=60.5
Q ss_pred cCChhhHHHHHHHhCCCceeeEEeeec--CCceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhhhC
Q 003062 778 RLQPARELNEYCQKHHFSMKKTVAPRI--NGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKASF 849 (852)
Q Consensus 778 ~~~P~~~L~e~~~~~~~~~~~~~~~~~--~g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~~~ 849 (852)
..||++.|+||||+.+..+.|..+... ++...|+|.|+|+|+.++ .|.|.|||+||+.||+.||+.|....
T Consensus 13 ~~n~Kt~LqE~~Q~~~~~p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~-~G~G~SKK~Aeq~AA~~AL~~L~~~~ 85 (97)
T 1x49_A 13 PGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFP-EAKGRSKQEARNAAAKLAVDILDNEN 85 (97)
T ss_dssp TTHHHHHHHHHHHHHTCCEEEEEEEEESCSSSCEEEEEEEESSCCCC-CEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHcCCCCeEEEEEeeCCCCCCcEEEEEEECCEEEE-EEeeCCHHHHHHHHHHHHHHHHHhhc
Confidence 468999999999998887778744433 336789999999998887 89999999999999999999998553
No 37
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=98.96 E-value=2.5e-09 Score=92.40 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=57.6
Q ss_pred CChhhHHHHHHHhCCCc-eeeEEeeec--CCceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhhh
Q 003062 779 LQPARELNEYCQKHHFS-MKKTVAPRI--NGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKAS 848 (852)
Q Consensus 779 ~~P~~~L~e~~~~~~~~-~~~~~~~~~--~g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~~ 848 (852)
.||++.|+||||+.++. +.|..+... ++...|+|.|+|+|. ++ .|.|.|||+||+.||+.||+.|...
T Consensus 6 ~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~-~G~G~SKK~Aeq~AA~~AL~~L~~~ 76 (89)
T 1uhz_A 6 SGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VA-TGTGPNKKIAKKNAAEAMLLQLGYK 76 (89)
T ss_dssp SCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EE-EEEESSHHHHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EE-EEeeCCHHHHHHHHHHHHHHHHhcc
Confidence 69999999999999886 458744433 336889999999996 66 8999999999999999999999743
No 38
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=98.96 E-value=9e-10 Score=94.35 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=56.0
Q ss_pred CChhhHHHHHHHhC-----CC-ceeeEEeeecC--CceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhhh
Q 003062 779 LQPARELNEYCQKH-----HF-SMKKTVAPRIN--GKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKAS 848 (852)
Q Consensus 779 ~~P~~~L~e~~~~~-----~~-~~~~~~~~~~~--g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~~ 848 (852)
.||++.|+||||+. +. .+.|..+...+ ..+.|+|+|+|+|+.++ .|.|.|||+|++.||+.||+.|...
T Consensus 1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~-~G~G~SKK~AEq~AA~~AL~~L~~~ 77 (85)
T 2khx_A 1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIG-CGKGPSIQQAEMGAAMDALEKYNFP 77 (85)
T ss_dssp CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECC-CEEESSHHHHHHHHHHHHHTTCCSS
T ss_pred CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEE-EEeeCCHHHHHHHHHHHHHHHHhHh
Confidence 48999999999973 44 34587443332 35789999999999887 8999999999999999999988643
No 39
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=98.91 E-value=7.2e-10 Score=93.23 Aligned_cols=68 Identities=15% Similarity=0.192 Sum_probs=57.2
Q ss_pred cCChhhHHHHHHHhCCCceeeEEeeecC--CceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhh
Q 003062 778 RLQPARELNEYCQKHHFSMKKTVAPRIN--GKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKA 847 (852)
Q Consensus 778 ~~~P~~~L~e~~~~~~~~~~~~~~~~~~--g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~ 847 (852)
..||++.|+||||+.++.+.|..+...+ +.+.|+|+|+++| .++ .|.|.|||+|++.||+.||+.|+.
T Consensus 6 ~~d~ks~LqE~~q~~~~~p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~-~G~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 6 KKSPISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGS-IVT-EGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CSCHHHHHHHHHHHTTCCCEEEESSSCCSSSCSCSSEEEEETT-EEE-EECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEEEeECCCCCCcEEEEEEECC-EEE-EEeeCCHHHHHHHHHHHHHHHHhh
Confidence 4699999999999998886687433332 3578999999999 666 899999999999999999999863
No 40
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=98.88 E-value=1.5e-09 Score=93.66 Aligned_cols=68 Identities=13% Similarity=0.136 Sum_probs=56.3
Q ss_pred cCChhhHHHHHHHhCCCceeeEEeeecC--CceEEEEEEEECCE-EEEeEEeeCCHHHHHHHHHHHHHHHhhh
Q 003062 778 RLQPARELNEYCQKHHFSMKKTVAPRIN--GKAAVTVEVHANGT-LFKHTHADADKETAKKVASKEVLKSLKA 847 (852)
Q Consensus 778 ~~~P~~~L~e~~~~~~~~~~~~~~~~~~--g~~~~~~~v~v~~~-~i~~~g~g~s~k~Ak~~AA~~AL~~L~~ 847 (852)
..||++.|+||+|+.+..+.|..+ .++ ....|+|.|+|+|. .++ .|.|.|||+|++.||+.||+.|+.
T Consensus 5 ~~D~KT~LQE~~Q~~~~~p~Y~v~-~~GpdH~k~F~v~v~i~~~~~~g-~G~G~SKK~AEQ~AA~~AL~~l~~ 75 (94)
T 1t4n_A 5 DMNAKRQLYSLIGYASLRLHYVTV-KKPTAVDPNSIVECRVGDGTVLG-TGVGRNIKIAGIRAAENALRDKKM 75 (94)
T ss_dssp CHHHHHHHHHHTCSSSSCCEEEEC-CCCSSSCCSEEEEEECSSSCEEE-EEEESSHHHHHHHHHHHHHHCHHH
T ss_pred CCCchHHHHHHHcCCCCCCEEEEe-eeCCCCCCeEEEEEEECCEEEEE-EEEeCCHHHHHHHHHHHHHHHHHH
Confidence 458999999999987545568743 333 25789999999998 787 899999999999999999988763
No 41
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=98.86 E-value=4.6e-09 Score=96.65 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=59.8
Q ss_pred cCChhhHHHHHHHhCCCce-eeEEeeecCCceEEEEEEEECCEEEEeEEee-CCHHHHHHHHHHHHHHHhhhh
Q 003062 778 RLQPARELNEYCQKHHFSM-KKTVAPRINGKAAVTVEVHANGTLFKHTHAD-ADKETAKKVASKEVLKSLKAS 848 (852)
Q Consensus 778 ~~~P~~~L~e~~~~~~~~~-~~~~~~~~~g~~~~~~~v~v~~~~i~~~g~g-~s~k~Ak~~AA~~AL~~L~~~ 848 (852)
..||++.|+||||+.+... .|..+.. ++...|+|.|+|+|+.++ .|.| .|||+||+.||+.||+.|...
T Consensus 25 ~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~-~H~~~F~v~V~v~g~~~g-~G~G~~SKK~AEQ~AA~~AL~~L~~~ 95 (128)
T 1whn_A 25 QITPKMCLLEWCRREKLPQPVYETVQR-TIDRMFCSVVTVAEQKYQ-STLWDKSKKLAEQTAAIVCLRSQGLP 95 (128)
T ss_dssp TCCHHHHHHHHHHHTTCCCCCCCEEEC-SSSCCEEEEEEETTEEEE-ESSCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEee-cCCCcEEEEEEECCEEEE-EEeccCCHHHHHHHHHHHHHHHHhcc
Confidence 3699999999999988765 4875444 667889999999999887 8999 999999999999999999743
No 42
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=98.86 E-value=6.8e-09 Score=92.31 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=57.1
Q ss_pred cCChhhHHHHHHHhCCCce-eeEEeee-cCCceEEEEEEEECCEEEEeEEee-CCHHHHHHHHHHHHHHHhhhh
Q 003062 778 RLQPARELNEYCQKHHFSM-KKTVAPR-INGKAAVTVEVHANGTLFKHTHAD-ADKETAKKVASKEVLKSLKAS 848 (852)
Q Consensus 778 ~~~P~~~L~e~~~~~~~~~-~~~~~~~-~~g~~~~~~~v~v~~~~i~~~g~g-~s~k~Ak~~AA~~AL~~L~~~ 848 (852)
..||++.|+||||+.+... .|..+.. .++...|+|.|+|+|+.++ .|.| .|||+||+.||+.||+.|...
T Consensus 16 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~-~G~G~~SKK~Aeq~AA~~AL~~L~~~ 88 (103)
T 2l2n_A 16 CYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYN-SLPGFFNRKAAEQSAAEVALRELAKS 88 (103)
T ss_dssp ---CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEE-CCSCBSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEE-EeecCCCHHHHHHHHHHHHHHHHhcc
Confidence 4799999999999998864 4874432 1236789999999999887 8999 999999999999999999854
No 43
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=98.84 E-value=1.3e-08 Score=87.96 Aligned_cols=71 Identities=20% Similarity=0.206 Sum_probs=59.1
Q ss_pred cCChhhHHHHHHHhCCCceeeEEeeec--CCceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhhhCCC
Q 003062 778 RLQPARELNEYCQKHHFSMKKTVAPRI--NGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKASFPG 851 (852)
Q Consensus 778 ~~~P~~~L~e~~~~~~~~~~~~~~~~~--~g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~~~~~ 851 (852)
..+++..|+||+|+.+ .+.|..+... +....|+|+|.|+|.. . .|.|.|||+||+.||+.||+.|....|.
T Consensus 13 ~~~~K~~LqEl~Qk~~-~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~-~-~G~G~SKK~AEq~AA~~AL~~L~~~~~~ 85 (91)
T 2l33_A 13 TKHGKNPVMELNEKRR-GLKYELISETGGSHDKRFVMEVEVDGQK-F-QGAGSNKKVAKAYAALAALEKLFPDTPL 85 (91)
T ss_dssp CSSTTCHHHHHHHHCS-SCEEEEEEEEECSSCEEEEEEEEETTEE-E-EEEESSHHHHHHHHHHHHHHHHCCCCCC
T ss_pred ccCCCCHHHHHHHhCC-CCeEEEEEeeCCCCCCeEEEEEEECCEE-E-EeeeCCHHHHHHHHHHHHHHHHhhcCCc
Confidence 4578999999999988 6678754433 3468999999999987 4 7999999999999999999999876653
No 44
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=98.83 E-value=6.4e-09 Score=91.63 Aligned_cols=68 Identities=15% Similarity=0.230 Sum_probs=56.8
Q ss_pred CChhhHHHHHHHhCCCceeeEEeeec--CCceEEEEEEEECC-EEEEeEEeeCCHHHHHHHHHHHHHHHhhhh
Q 003062 779 LQPARELNEYCQKHHFSMKKTVAPRI--NGKAAVTVEVHANG-TLFKHTHADADKETAKKVASKEVLKSLKAS 848 (852)
Q Consensus 779 ~~P~~~L~e~~~~~~~~~~~~~~~~~--~g~~~~~~~v~v~~-~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~~ 848 (852)
.||++.|+||||++...+.|.. ... ++...|+|.|+|+| +.++ .|.|.|||+||+.||+.||+.|...
T Consensus 6 ~d~Kt~LqE~~Qk~~~~P~Y~~-~~~Gp~H~~~F~~~V~v~g~~~~~-~G~G~SKK~Aeq~AA~~AL~~L~~~ 76 (99)
T 1whq_A 6 SGIKNFLYAWCGKRKMTPAYEI-RAVGNKNRQKFMCEVRVEGFNYAG-MGNSTNKKDAQSNAARDFVNYLVRI 76 (99)
T ss_dssp CSSHHHHHHHHHHTTCCCEEEE-EEEECSSSEEEEEEEECTTCSCCE-EEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCeEEE-eeecCCCCCeEEEEEEECCeEEEE-EeccCCHHHHHHHHHHHHHHHHHhh
Confidence 5999999999999843455874 332 34688999999999 6777 8999999999999999999999754
No 45
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=98.80 E-value=7.2e-09 Score=92.51 Aligned_cols=67 Identities=13% Similarity=0.136 Sum_probs=55.8
Q ss_pred cCChhhHHHHHHHhCCCceeeEEeeecCC--ceEEEEEEEECCE-EEEeEEeeCCHHHHHHHHHHHHHHHhh
Q 003062 778 RLQPARELNEYCQKHHFSMKKTVAPRING--KAAVTVEVHANGT-LFKHTHADADKETAKKVASKEVLKSLK 846 (852)
Q Consensus 778 ~~~P~~~L~e~~~~~~~~~~~~~~~~~~g--~~~~~~~v~v~~~-~i~~~g~g~s~k~Ak~~AA~~AL~~L~ 846 (852)
..||++.|+||+|+.+..+.|..+. ++. ...|+|.|+|+|. .++ .|.|.|+|+|++.||+.||+.++
T Consensus 7 ~~D~KT~LQE~~Q~~~~~P~Y~vv~-~GPdH~k~F~v~V~i~g~~~~g-~G~G~SKK~AEQ~AA~~AL~~l~ 76 (117)
T 1t4o_A 7 DMNAKRQLYSLIGYASLRLHYVTVK-KPTAVDPNSIVECRVGDGTVLG-TGVGRNIKIAGIRAAENALRDKK 76 (117)
T ss_dssp CTTHHHHHHHHHCCGGGCCEEEEEE-CCCSSCCCEEEEEECTTCCEEE-EEEESSHHHHHHHHHHHHHHCHH
T ss_pred CCCchHHHHHHHcCCCCCCEEEEee-eCCCCCCeEEEEEEECCEEEEE-EEEeCCHHHHHHHHHHHHHHHHH
Confidence 4699999999999855445587544 332 5689999999998 787 89999999999999999998776
No 46
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=98.73 E-value=2.9e-08 Score=82.65 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=54.2
Q ss_pred cCChhhHHHHHHHhCCCceeeEEeeec--CCceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhh
Q 003062 778 RLQPARELNEYCQKHHFSMKKTVAPRI--NGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLK 846 (852)
Q Consensus 778 ~~~P~~~L~e~~~~~~~~~~~~~~~~~--~g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~ 846 (852)
..||++.|+||+|+ ...+.|..+... ++...|+|.|.|+|.. . .|.|.|||+|++.||+.||+.|.
T Consensus 3 ~~d~Ks~Lqe~~q~-~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~-~-~G~G~SKK~Aeq~AA~~al~~L~ 70 (73)
T 2b7t_A 3 PVLPKNALMQLNEI-KPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-F-EGSGPTKKKAKLHAAEKALRSFV 70 (73)
T ss_dssp SSSSHHHHHHHHHH-CSCCEEEEEEEECSSSSCEEEEEEESSSSE-E-EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcC-CCCceEEEEEeeCCCCCCeEEEEEEECCEE-E-EeecCCHHHHHHHHHHHHHHHHh
Confidence 36899999999996 334557744433 3468999999999987 4 79999999999999999999986
No 47
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=98.72 E-value=4.5e-08 Score=86.03 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=55.7
Q ss_pred cCChhhHHHHHHHhCCCceeeEEeeec--CCceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhh
Q 003062 778 RLQPARELNEYCQKHHFSMKKTVAPRI--NGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKA 847 (852)
Q Consensus 778 ~~~P~~~L~e~~~~~~~~~~~~~~~~~--~g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~ 847 (852)
..||++.|+||||++ ..+.|..+... ++...|+|.|+|+|+.+ .|.|.|||+|++.||+.||+.|+.
T Consensus 15 ~~d~Kt~LqE~~Q~~-~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~--~G~G~SKK~Aeq~AA~~aL~~L~~ 83 (97)
T 2dmy_A 15 AIDLMNALMRLNQIR-PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY--EASGPSKKTAKLHVAVKVLQAMGY 83 (97)
T ss_dssp SSSCTHHHHHHHHHS-CSCCCEEEEEESCSSSCEEEEEEEETTEEE--EEEESSHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhcC-CCceEEEEEeeCCCCCCeEEEEEEECCEEE--EEeeCCHHHHHHHHHHHHHHHhCC
Confidence 479999999999996 34457744333 34689999999999874 799999999999999999999974
No 48
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=98.71 E-value=2.7e-08 Score=89.90 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=57.2
Q ss_pred CChhhHHHHHHHhCCCceeeEEeeec--CCceEEEEEEEE-----CCEEEEeEEeeCCHHHHHHHHHHHHHHHhhhh
Q 003062 779 LQPARELNEYCQKHHFSMKKTVAPRI--NGKAAVTVEVHA-----NGTLFKHTHADADKETAKKVASKEVLKSLKAS 848 (852)
Q Consensus 779 ~~P~~~L~e~~~~~~~~~~~~~~~~~--~g~~~~~~~v~v-----~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~~ 848 (852)
.||++.|+||||+.+..+.|. +... ++...|+|.|+| +|+.++ .|.|.|||+|++.||+.||+.|...
T Consensus 26 ~d~Kt~LqE~~Qk~~~~p~Y~-~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~-~G~G~SKK~AEq~AA~~AL~~L~~~ 100 (113)
T 1uil_A 26 ENAKARLNQYFQKEKIQGEYK-YTQVGPDHNRSFIAEMTIYIKQLGRRIFA-REHGSNKKLAAQSCALSLVRQLYHL 100 (113)
T ss_dssp HHHHHHHHHHHHHSCCCCCCE-EEEESCSTTCEEEEEEEEEETTTTEEEEE-ECCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCeEE-EeeECCCCCCcEEEEEEEeeeccCCEEEE-EEeeCCHHHHHHHHHHHHHHHHHhc
Confidence 589999999999988855587 5443 346799999999 577776 8999999999999999999998754
No 49
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=98.68 E-value=5.5e-08 Score=87.40 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=54.0
Q ss_pred cCChhhHHHHHHHhCCCceeeEEeeec--CCceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhhh
Q 003062 778 RLQPARELNEYCQKHHFSMKKTVAPRI--NGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKAS 848 (852)
Q Consensus 778 ~~~P~~~L~e~~~~~~~~~~~~~~~~~--~g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~~ 848 (852)
..||++.|+||||+ +.|..+... +....|+|+|.|+|+.+ .|.|.|||+||+.||+.||+.|...
T Consensus 36 ~kd~Ks~LQE~~q~----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~--~G~G~SKK~AEq~AA~~AL~~L~~~ 102 (114)
T 2ljh_A 36 PKNTVAMLNELRHG----LIYKLESQTGPVHAPLFTISVEVDGQKY--LGQGRSKKVARIEAAATALRSFIQF 102 (114)
T ss_dssp CSCHHHHHHHHCSC----CEEEEEEEECCSSSCEEEEEEEETTEEE--EEEESSHHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHccC----CeEEEEEeeCCCCCCeEEEEEEECCEEE--EeeeCCHHHHHHHHHHHHHHHHHcC
Confidence 37999999999985 557643333 34689999999999876 6999999999999999999999743
No 50
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=98.55 E-value=2e-07 Score=95.62 Aligned_cols=72 Identities=19% Similarity=0.161 Sum_probs=60.8
Q ss_pred cCChhhHHHHHHHhCCCc-eeeEEeeecCCceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhhhCC
Q 003062 778 RLQPARELNEYCQKHHFS-MKKTVAPRINGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKASFP 850 (852)
Q Consensus 778 ~~~P~~~L~e~~~~~~~~-~~~~~~~~~~g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~~~~ 850 (852)
..+|++.|+||||+.+.. +.|..+...+....|+|.|+|+|..++ .|.|.|||+|++.||+.||+.|....+
T Consensus 21 ~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~~~F~~~v~v~g~~~~-~G~G~SKK~Aeq~AA~~aL~~L~~~~~ 93 (232)
T 2yt4_A 21 GKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYG-SGTASSKKLAKNKAARATLEILIPDFV 93 (232)
T ss_dssp TSCHHHHHHHHHHHTTCCCCEEEEEECSCTTSCEEEEEEETTEEEE-EEEESSHHHHHHHHHHHHHHHHSTTTT
T ss_pred CCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCcEEEEEEECCEEEe-ecCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 479999999999999875 458754444434889999999999887 899999999999999999999986533
No 51
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=98.52 E-value=4.5e-07 Score=75.66 Aligned_cols=67 Identities=27% Similarity=0.325 Sum_probs=51.8
Q ss_pred cCChhhHHHHHHHhCCCceeeEEeeec--CCceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhhhCC
Q 003062 778 RLQPARELNEYCQKHHFSMKKTVAPRI--NGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKASFP 850 (852)
Q Consensus 778 ~~~P~~~L~e~~~~~~~~~~~~~~~~~--~g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~~~~ 850 (852)
..||+.+|+|++ ..+.|..+... ++...|+|.|.|+|..+ .|.|.|||+||+.||+.||+.|....|
T Consensus 6 ~K~pl~~L~q~~----~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~--~G~G~SKK~Aeq~AA~~al~~L~~~~~ 74 (75)
T 3p1x_A 6 GKNPVMELNEKR----RGLKYELISETGGSHDKRFVMEVEVDGQKF--QGAGSNKKVAKAYAALAALEKLFPDTP 74 (75)
T ss_dssp CCCHHHHHHHHS----TTCCEEEEEEESCTTSCEEEEEEEETTEEE--EEEESSHHHHHHHHHHHHHHHHCTTCC
T ss_pred CCCHHHHHHHcC----CCCEEEEEEeeCCCCCceEEEEEEECCEEE--EEEECCHHHHHHHHHHHHHHHHHccCC
Confidence 357777777763 23456644333 34689999999999865 699999999999999999999987655
No 52
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=98.51 E-value=3.2e-07 Score=75.85 Aligned_cols=65 Identities=18% Similarity=0.173 Sum_probs=51.6
Q ss_pred cCChhhHHHHHHHhCCCceeeEEeeec--CCceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhhh
Q 003062 778 RLQPARELNEYCQKHHFSMKKTVAPRI--NGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKAS 848 (852)
Q Consensus 778 ~~~P~~~L~e~~~~~~~~~~~~~~~~~--~g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~~ 848 (852)
..||++.|+|++ ..+.|..+... ++...|+|+|.++|+. . .|.|.|||+|++.||+.||+.|...
T Consensus 3 ~knp~s~L~E~~----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~-~-~G~G~SKK~Aeq~AA~~al~~L~~~ 69 (71)
T 2b7v_A 3 GKNPVMILNELR----PGLKYDFLSESGESHAKSFVMSVVVDGQF-F-EGSGRNKKLAKARAAQSALATVFNL 69 (71)
T ss_dssp SSCHHHHHHHHC----CSCEEEEEECCCCTTTCCEEEEEECSSCE-E-EEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC----CCCEEEEEEeECCCCCceEEEEEEECCEE-E-EEeeCCHHHHHHHHHHHHHHHHHhc
Confidence 368999999993 23457643333 3367899999999985 4 7999999999999999999998753
No 53
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=98.48 E-value=1.2e-07 Score=93.64 Aligned_cols=70 Identities=26% Similarity=0.240 Sum_probs=59.5
Q ss_pred cCChhhHHHHHHHhCCCceeeEEeeec--CCceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhhh
Q 003062 778 RLQPARELNEYCQKHHFSMKKTVAPRI--NGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKAS 848 (852)
Q Consensus 778 ~~~P~~~L~e~~~~~~~~~~~~~~~~~--~g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~~ 848 (852)
..||++.|+||+|+++..+.|..+... ++...|+|.|.|+|+.++ .|.|.|||+||+.||+.||+.|...
T Consensus 12 ~~n~ks~LqE~~q~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~-~G~G~sKK~Aeq~AA~~al~~L~~~ 83 (179)
T 1qu6_A 12 AGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFP-EGEGRSKKEAKNAAAKLAVEILNKE 83 (179)
T ss_dssp SCSHHHHHHHHHHHHTCCCEEEEEESCBTTTBCCEEEEEESSSSCCC-EEECCSSHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHhCCCCCeEEEeeccCCCCCCeEEEEEEECCEEEE-ecCCCCHHHHHHHHHHHHHHHHhcc
Confidence 478999999999998887778744333 235789999999998877 8999999999999999999999754
No 54
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=98.28 E-value=1.3e-06 Score=86.15 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=59.6
Q ss_pred cCChhhHHHHHHHhCCCceeeEEeeec--CCceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhhhCC
Q 003062 778 RLQPARELNEYCQKHHFSMKKTVAPRI--NGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKASFP 850 (852)
Q Consensus 778 ~~~P~~~L~e~~~~~~~~~~~~~~~~~--~g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~~~~ 850 (852)
..||+..|+|+|+++++.+.|.. ... .+...|+|+|.|+|..++ .|.|.|||+||+.||+.||+.|....+
T Consensus 103 ~~n~~~~L~E~~qk~~~~~~Y~~-~~~G~~h~~~F~~~v~v~~~~~~-~g~g~sKK~Ak~~AA~~al~~L~~~~~ 175 (179)
T 1qu6_A 103 MGNYIGLINRIAQKKRLTVNYEQ-CASGVHGPEGFHYKCKMGQKEYS-IGTGSTKQEAKQLAAKLAYLQILSEET 175 (179)
T ss_dssp CCCCHHHHHHHHHHSCCEEEEEE-EEECSSSSSEEEEEEEEETTBCC-EEEESSHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHhcCCcceEEe-cCcCCCCCCeEEEEEEECCEEEe-eEEECCHHHHHHHHHHHHHHHHhcccC
Confidence 36999999999999999877763 222 235689999999999776 899999999999999999999976544
No 55
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=98.22 E-value=7.5e-07 Score=84.36 Aligned_cols=78 Identities=26% Similarity=0.327 Sum_probs=64.9
Q ss_pred ccccCcEEEcCc------CCceEEEEeecCCCCCCCCCCCCCCCcchHHHHHHHHhCcccccCCceeEEEeecccccccc
Q 003062 288 CMIYNSVVCTPH------SGQIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLCFDQELLLNGRRIFHAQNYL 361 (852)
Q Consensus 288 ~~~~~~~V~~~~------~~~~Y~v~~i~~dl~p~S~f~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~~~r~N~L 361 (852)
..++|..|.+.| +++.|.|.+|.++-++.+.|+. ++..+|+.+||+++ ++.|.++++|+|.+..-
T Consensus 35 k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F~~-~g~~isv~~Yf~~~-~~~l~~p~lP~l~~g~~------- 105 (143)
T 1vyn_A 35 PFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEH-DGKKVTIASYFHSR-NYPLKFPQLHCLNVGSS------- 105 (143)
T ss_dssp HHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEEES-SSCEEEHHHHHHHT-TCCCSSTTSEEEEEECS-------
T ss_pred HHcCCeEEEEecCCCccCCCceEEEeeccCCCccceEEEc-CCCEEEHHHHHHHc-CCCCCCCCCCeEEecCC-------
Confidence 458898999988 5689999999999999999975 45678999999998 99999999999988721
Q ss_pred chhhhhccCCCCcceeecCcchhhh
Q 003062 362 SKCRQEKQREPSKISFELPPELCRI 386 (852)
Q Consensus 362 ~~~~~~~~~~~~~~~~~L~PElC~~ 386 (852)
...++||+|+|.+
T Consensus 106 ------------~k~~ylP~ElC~i 118 (143)
T 1vyn_A 106 ------------IKSILLPIELCSI 118 (143)
T ss_dssp ------------SSEEEEEGGGEEE
T ss_pred ------------CCCeEeccEeEEc
Confidence 1136799999965
No 56
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A
Probab=98.03 E-value=1.8e-06 Score=79.34 Aligned_cols=79 Identities=27% Similarity=0.339 Sum_probs=63.4
Q ss_pred cccccCcEEEcCc------CCceEEEEeecCCCCCCCCCCCCCCCcchHHHHHHHHhCcccccCCceeEEEeeccccccc
Q 003062 287 TCMIYNSVVCTPH------SGQIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLCFDQELLLNGRRIFHAQNY 360 (852)
Q Consensus 287 ~~~~~~~~V~~~~------~~~~Y~v~~i~~dl~p~S~f~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~~~r~N~ 360 (852)
...++|..|.+.| +++.|.|.++.++-.+.++|+. ++..+|+.+||+++ ++.+.++++|+|.+..
T Consensus 32 ~k~LkGl~V~~~~~~~~~~~~r~yrI~~l~~~~a~~~~F~~-~g~~isV~~Yf~~~-~~~l~~p~lP~l~~g~------- 102 (124)
T 3mj0_A 32 EPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEH-DGKKVTIASYFHSR-NYPLKFPQLHCLNVGS------- 102 (124)
T ss_dssp HHHHTTCEEEECCCGGGTCCCEEEECCEEEEEETTTCEEES-SSSEEEHHHHHHTT-TCCCSCSSSEEEECCB-------
T ss_pred HHHhCCeEEEEecccccccCCceEEEEeccCCCccccEEee-CCcEEEHHHHHHHc-CCcccCCCCCeEeecC-------
Confidence 3457888888887 4579999999988888889986 46789999999998 9999999999997641
Q ss_pred cchhhhhccCCCCcceeecCcchhhh
Q 003062 361 LSKCRQEKQREPSKISFELPPELCRI 386 (852)
Q Consensus 361 L~~~~~~~~~~~~~~~~~L~PElC~~ 386 (852)
.....+||+|+|.+
T Consensus 103 ------------~~~~~ylP~Elc~i 116 (124)
T 3mj0_A 103 ------------SIKSILLPIELCSI 116 (124)
T ss_dssp ------------TTBCCEECGGGEEE
T ss_pred ------------CCCceEecceeEEE
Confidence 01235799999964
No 57
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=97.76 E-value=6.4e-05 Score=77.32 Aligned_cols=64 Identities=19% Similarity=0.201 Sum_probs=51.3
Q ss_pred cCChhhHHHHHHHhCCCceeeEEeeec--CCceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhh
Q 003062 778 RLQPARELNEYCQKHHFSMKKTVAPRI--NGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKA 847 (852)
Q Consensus 778 ~~~P~~~L~e~~~~~~~~~~~~~~~~~--~g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~ 847 (852)
..||++.|+|| ...+.|..+... +....|+|+|.|+|+. . .|.|.|||+||+.||+.||+.|..
T Consensus 160 ~~d~ks~LqE~----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~-~-~G~G~sKK~Aeq~AA~~al~~L~~ 225 (236)
T 2l3j_A 160 GKNPVMILNEL----RPGLKYDFLSESGESHAKSFVMSVVVDGQF-F-EGSGRNKKLAKARAAQSALATVFN 225 (236)
T ss_dssp SCCHHHHHHHH----CCCEEEEEECCSSSSSSCCEEEEEEETTEE-E-EEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHhc----CCCCcEEEEEeeCCCCCCeEEEEEEECCEE-E-EeeeCCHHHHHHHHHHHHHHHHcc
Confidence 46999999999 223457643333 2357899999999986 4 799999999999999999999974
No 58
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=97.64 E-value=6.1e-05 Score=77.15 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=50.6
Q ss_pred cCChhhHHHHHHHhCCCcee-eE--EeeecC--CceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhhhCC
Q 003062 778 RLQPARELNEYCQKHHFSMK-KT--VAPRIN--GKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKASFP 850 (852)
Q Consensus 778 ~~~P~~~L~e~~~~~~~~~~-~~--~~~~~~--g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~~~~ 850 (852)
..||++.|+| |+++++.++ |. .+...+ +...|+|.|. +. .+ .|.|.|||+||+.||+.||+.|....+
T Consensus 129 ~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~--~~-~~-~G~G~sKK~Aeq~AA~~aL~~L~~~~~ 201 (232)
T 2yt4_A 129 LLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG--KH-TV-RGWCKNKRVGKQLASQKILQLLHPHVK 201 (232)
T ss_dssp CCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET--TE-EE-EEEESSHHHHHHHHHHHHHHHHSTTCC
T ss_pred CCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE--EE-EE-EEEeCCHHHHHHHHHHHHHHHHHhhcc
Confidence 4699999999 888887654 64 332222 3567888765 43 44 899999999999999999999986554
No 59
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=97.62 E-value=0.00015 Score=74.61 Aligned_cols=66 Identities=17% Similarity=0.206 Sum_probs=51.9
Q ss_pred CChhhHHHHHHHhCCCceeeEEeeec--CCceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhh
Q 003062 779 LQPARELNEYCQKHHFSMKKTVAPRI--NGKAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKA 847 (852)
Q Consensus 779 ~~P~~~L~e~~~~~~~~~~~~~~~~~--~g~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~ 847 (852)
.+|++.|++|++. +..+.|..+... +....|+|+|.|+|+. . .|.|.|||+||+.||+.||+.|..
T Consensus 4 ~~~K~~l~~l~e~-~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~-~-~G~G~SKK~Aeq~AA~~al~~l~~ 71 (236)
T 2l3j_A 4 VLPKNALMQLNEI-KPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-F-EGSGPTKKKAKLHAAEKALRSFVQ 71 (236)
T ss_dssp CCTHHHHHHHHHH-CSSCEEEEEEEESCTTSCEEEEEEEETTEE-E-EEEESHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHhhc-CCCceEEEEeccCCCCCCeEEEEEEECCEE-E-EEecCChHHHHHHHHHHHHHHHHh
Confidence 5777778777764 223457744433 3368999999999987 4 799999999999999999999975
No 60
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=97.38 E-value=8.3e-05 Score=90.37 Aligned_cols=80 Identities=20% Similarity=0.224 Sum_probs=58.9
Q ss_pred ccccCcEEEcCc---CCceEEEEeecCCCCCCCCCCC--CCCC--cchHHHHHHHHhCcccccCCceeEEEeeccccccc
Q 003062 288 CMIYNSVVCTPH---SGQIYYITGVLGHLNANSLFTR--NDGG--AITYKKHYEERYGIQLCFDQELLLNGRRIFHAQNY 360 (852)
Q Consensus 288 ~~~~~~~V~~~~---~~~~Y~v~~i~~dl~p~S~f~~--~~~~--~~ty~~yy~~k~~~~i~~~~QPlL~~~~~~~r~N~ 360 (852)
..++|..|.+.| +++.|.|.+|.++-....+|+. .++. .+|+.+||+++|++.|.+++||+|++..-
T Consensus 262 k~LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~lPll~~g~~------ 335 (861)
T 4f3t_A 262 KEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQE------ 335 (861)
T ss_dssp HHHTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTSEEEEESCT------
T ss_pred HHhCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCCCCceeEEHHHHHHHhcCcccCCCCCceEEecCC------
Confidence 458898888888 4579999999753333335742 2332 58999999999999999999999977411
Q ss_pred cchhhhhccCCCCcceeecCcchhhh
Q 003062 361 LSKCRQEKQREPSKISFELPPELCRI 386 (852)
Q Consensus 361 L~~~~~~~~~~~~~~~~~L~PElC~~ 386 (852)
...++||||+|.+
T Consensus 336 -------------~~~~ylP~Elc~i 348 (861)
T 4f3t_A 336 -------------QKHTYLPLEVCNI 348 (861)
T ss_dssp -------------TTTEEEEGGGEEE
T ss_pred -------------CCCccccceeEEe
Confidence 1126799999975
No 61
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=95.57 E-value=0.0009 Score=79.37 Aligned_cols=73 Identities=11% Similarity=0.021 Sum_probs=47.4
Q ss_pred CCceEEEEeecCCCCCCC--CC---CCCC-CCcchHHHHHHHHhCcccccCCceeEEEeeccccccccchhhhhccCCCC
Q 003062 300 SGQIYYITGVLGHLNANS--LF---TRND-GGAITYKKHYEERYGIQLCFDQELLLNGRRIFHAQNYLSKCRQEKQREPS 373 (852)
Q Consensus 300 ~~~~Y~v~~i~~dl~p~S--~f---~~~~-~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~~~r~N~L~~~~~~~~~~~~ 373 (852)
|+.+|.+.+ ++|.+|.| .| ...+ ....+|.+||..+|++ .|.+||||..+...+ . + ...
T Consensus 194 n~~~Y~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~y~i--~d~~QPllvs~~~~~----~-~-------~~~ 258 (771)
T 1u04_A 194 CFEEYTKKP-KLDHNQEIVKYWYNYHIERYWNTPEAKLEFYRKFGQ--VDLKQPAILAKFASK----I-K-------KNK 258 (771)
T ss_dssp CBCTTSSCB-CEECCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHCS--CCTTSCEEEEEESCC-----------------
T ss_pred ccceeecCC-ccccCCCChhheeceeecCCCCCcchhHHHHHhcCc--CcCCCCeEEecchhh----c-c-------CCC
Confidence 566777766 66777766 44 3221 1345777777799995 789999999986532 1 0 111
Q ss_pred cceeecCcchhhhh
Q 003062 374 KISFELPPELCRII 387 (852)
Q Consensus 374 ~~~~~L~PElC~~~ 387 (852)
...++|+||||.+.
T Consensus 259 ~~~i~LiPELc~~T 272 (771)
T 1u04_A 259 NYKIYLLPQLVVPT 272 (771)
T ss_dssp CCCEEECTTTEEEE
T ss_pred CceeeechHhhhhc
Confidence 23478999999764
No 62
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=92.47 E-value=0.2 Score=44.69 Aligned_cols=73 Identities=12% Similarity=0.073 Sum_probs=44.9
Q ss_pred hhHHHHHhhcccccCCCcEEEEEeccccCCCeEEEcCCeEEEEEEcCCCCC-Cccc--cccCcHHHHHHHHHHHHHHHHH
Q 003062 7 TVCSFIQSRGRARMQNSDYLLMLKRYFKPTPKFDINKEMGICTLYLPNNCP-IQTV--IAQGNIKTLKQTACLEACKKLH 83 (852)
Q Consensus 7 t~~syIQSRGRAR~~~S~yi~m~e~~~~~~P~~~~~~~~~~~~v~LP~~~p-~~~~--~~~~s~~~Ak~~aAf~Ac~~L~ 83 (852)
-+..|.|++|. .. .|- +-+.=-+..| .|+|+|.++.--. -+.. -.-+|||.|++.||..|+..|.
T Consensus 31 ~LqE~~Qk~~~--~p--~Y~-~~~~Gp~H~~-------~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~ 98 (113)
T 1uil_A 31 RLNQYFQKEKI--QG--EYK-YTQVGPDHNR-------SFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLY 98 (113)
T ss_dssp HHHHHHHHSCC--CC--CCE-EEEESCSTTC-------EEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC--CC--eEE-EeeECCCCCC-------cEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHH
Confidence 35568888876 22 354 2111001123 4678888751100 0111 3457999999999999999999
Q ss_pred hcCCCCCC
Q 003062 84 QIGALTDN 91 (852)
Q Consensus 84 ~~G~ldd~ 91 (852)
+.|++..+
T Consensus 99 ~~~~ie~~ 106 (113)
T 1uil_A 99 HLGVIEAY 106 (113)
T ss_dssp HHTSSCCC
T ss_pred hcCCcccc
Confidence 99887755
No 63
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=91.60 E-value=0.53 Score=41.22 Aligned_cols=42 Identities=21% Similarity=0.101 Sum_probs=30.0
Q ss_pred eEEEEEEcCCCCCCccc---cccCcHHHHHHHHHHHHHHHHHhcCCCCC
Q 003062 45 MGICTLYLPNNCPIQTV---IAQGNIKTLKQTACLEACKKLHQIGALTD 90 (852)
Q Consensus 45 ~~~~~v~LP~~~p~~~~---~~~~s~~~Ak~~aAf~Ac~~L~~~G~ldd 90 (852)
.|+|+|++.. +.. ..++|||.|++.||-.|+..|.+.+.+-|
T Consensus 49 ~F~~~V~v~g----~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~~~~~ 93 (103)
T 2l2n_A 49 LFQSTVILDG----VRYNSLPGFFNRKAAEQSAAEVALRELAKSSELSQ 93 (103)
T ss_dssp EEEEEEEETT----EEEECCSCBSSHHHHHHHHHHHHHHHHHHHC----
T ss_pred eEEEEEEECC----EEEEEeecCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 5788888764 222 22379999999999999999998877644
No 64
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=91.56 E-value=0.41 Score=41.59 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=37.5
Q ss_pred eEEEEEEcCCCCCCccccccCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 003062 45 MGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLHQIGALTDNLLPD 95 (852)
Q Consensus 45 ~~~~~v~LP~~~p~~~~~~~~s~~~Ak~~aAf~Ac~~L~~~G~ldd~LlP~ 95 (852)
.|+|+|++-.. -....-..+|||.|++.||-.|+..|.+.|.++..=+|.
T Consensus 37 ~F~~~V~v~g~-~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~~~~~~P~ 86 (99)
T 1whq_A 37 KFMCEVRVEGF-NYAGMGNSTNKKDAQSNAARDFVNYLVRINEVKSEEVPA 86 (99)
T ss_dssp EEEEEEECTTC-SCCEEEEESSHHHHHHHHHHHHHHHHHHHTSSCTTTSCC
T ss_pred eEEEEEEECCe-EEEEEeccCCHHHHHHHHHHHHHHHHHhhCCCCcccCCC
Confidence 47889987641 011113357999999999999999999999887766676
No 65
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=90.71 E-value=0.17 Score=62.08 Aligned_cols=77 Identities=19% Similarity=0.187 Sum_probs=49.8
Q ss_pred cccCcEEEcCcCC---------------ceEEEEeecCCCCCCCCCCCCCC--------------CcchHHHHHHHHhCc
Q 003062 289 MIYNSVVCTPHSG---------------QIYYITGVLGHLNANSLFTRNDG--------------GAITYKKHYEERYGI 339 (852)
Q Consensus 289 ~~~~~~V~~~~~~---------------~~Y~v~~i~~dl~p~S~f~~~~~--------------~~~ty~~yy~~k~~~ 339 (852)
.++|--|.+.|.+ +.|.|.++...-.-.-.|+..++ ..+|-.+||+++||+
T Consensus 355 ~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~~~~~~~~~~~~~~g~~~~~iTVadYFk~kYni 434 (1046)
T 4f1n_A 355 LLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNVLESSLKKNSAPKPNEKPININTIDYFKRKYDI 434 (1046)
T ss_dssp HHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC-----------------------CHHHHHHHHSCC
T ss_pred HhCCCEEEEEecCccccccccccccccccceEEeeccCCCCCceEEeccCCcccccccccCCcCceEEEHHHHHHHHhCc
Confidence 4677777777743 36889888742222335754322 357999999999999
Q ss_pred ccccCCceeEEEeeccccccccchhhhhccCCCCcceeecCcchhhh
Q 003062 340 QLCFDQELLLNGRRIFHAQNYLSKCRQEKQREPSKISFELPPELCRI 386 (852)
Q Consensus 340 ~i~~~~QPlL~~~~~~~r~N~L~~~~~~~~~~~~~~~~~L~PElC~~ 386 (852)
.|.+++.|+|++-. . . ++||+|+|.+
T Consensus 435 ~LkyP~LPcV~VG~-----------------~---~-~ylPmElC~I 460 (1046)
T 4f1n_A 435 TLKYPDMKLVNLGG-----------------K---N-DVVPPECLTI 460 (1046)
T ss_dssp CCSCTTSCCEECST-----------------T---T-CEECGGGCCB
T ss_pred ccCCCCCCEEEECC-----------------C---C-cccccceEEe
Confidence 99999999997430 1 1 4799999964
No 66
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=90.62 E-value=0.097 Score=59.95 Aligned_cols=76 Identities=26% Similarity=0.330 Sum_probs=54.3
Q ss_pred cccCcEEEcCc------CCceEEEEeecCCCCC-CCCCCCCCCCcchHHHHHHHHhCcccccCCceeEEEeecccccccc
Q 003062 289 MIYNSVVCTPH------SGQIYYITGVLGHLNA-NSLFTRNDGGAITYKKHYEERYGIQLCFDQELLLNGRRIFHAQNYL 361 (852)
Q Consensus 289 ~~~~~~V~~~~------~~~~Y~v~~i~~dl~p-~S~f~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~~~r~N~L 361 (852)
.++|.-|.+.| .++.|.|.++.. .++ ...|+. ++..+|-.+||+ +|++.+.+++-|+|++.+-
T Consensus 416 ~l~~l~v~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~f~~-~~~~~sv~~yf~-~~~~~l~~p~lp~v~~~~~------- 485 (509)
T 1r6z_P 416 FLRGINVVYTPPQSFQSAPRVYRVNGLSR-APASSETFEH-DGKKVTIASYFH-SRNYPLKFPQLHCLNVGSS------- 485 (509)
T ss_dssp HHTTCEEEECCCGGGCCCCEEEECCEEEE-EETTTCEEEE-TTEEEEHHHHHH-HTTCCCSCTTSEEEECSCT-------
T ss_pred HhCCcEEEEecCCCccCCCCeEEEeeCCC-CChhhcEecc-CCeEEEHHHHHH-HcCCcccCCCCCeEecCCC-------
Confidence 36777777666 466899888864 222 234654 346789999999 8999999999999966521
Q ss_pred chhhhhccCCCCcceeecCcchhhh
Q 003062 362 SKCRQEKQREPSKISFELPPELCRI 386 (852)
Q Consensus 362 ~~~~~~~~~~~~~~~~~L~PElC~~ 386 (852)
...+++|.|+|.+
T Consensus 486 ------------~~~~~~P~e~~~i 498 (509)
T 1r6z_P 486 ------------IKSILLPIELCSI 498 (509)
T ss_dssp ------------TSCCEECGGGEEE
T ss_pred ------------CCCceecceeeEe
Confidence 1236799999965
No 67
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=90.33 E-value=0.74 Score=37.44 Aligned_cols=35 Identities=23% Similarity=0.124 Sum_probs=26.4
Q ss_pred eEEEEEEcCCCCCCccc--ccc-CcHHHHHHHHHHHHHHHHH
Q 003062 45 MGICTLYLPNNCPIQTV--IAQ-GNIKTLKQTACLEACKKLH 83 (852)
Q Consensus 45 ~~~~~v~LP~~~p~~~~--~~~-~s~~~Ak~~aAf~Ac~~L~ 83 (852)
.|+|+|++-. +.. ... +|||.|++.||-.|+..|-
T Consensus 35 ~F~~~v~v~g----~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 35 LFQSTVILDG----VRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp EEEEEEEETT----EEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEECC----EEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 5778888753 222 223 7999999999999999884
No 68
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=90.18 E-value=0.11 Score=61.89 Aligned_cols=30 Identities=30% Similarity=0.534 Sum_probs=27.3
Q ss_pred CCCcchhhHHHHHhhcccccCCCcEEEEEe
Q 003062 1 MFDPSHTVCSFIQSRGRARMQNSDYLLMLK 30 (852)
Q Consensus 1 rFD~p~t~~syIQSRGRAR~~~S~yi~m~e 30 (852)
.||+|.|..+|+|+.||||+.++.++++..
T Consensus 488 ~~d~p~s~~~~~Qr~GRArr~g~~~~l~~~ 517 (699)
T 4gl2_A 488 RYGLVTNEIAMVQARGRARADESTYVLVAH 517 (699)
T ss_dssp EESCCCCHHHHHHHHTTSCSSSCEEEEEEE
T ss_pred EeCCCCCHHHHHHHcCCCCCCCceEEEEEe
Confidence 389999999999999999999999888864
No 69
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=89.93 E-value=0.56 Score=39.90 Aligned_cols=37 Identities=11% Similarity=-0.077 Sum_probs=28.4
Q ss_pred eEEEEEEcCCCCCCccccccCcHHHHHHHHHHHHHHHHHh
Q 003062 45 MGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLHQ 84 (852)
Q Consensus 45 ~~~~~v~LP~~~p~~~~~~~~s~~~Ak~~aAf~Ac~~L~~ 84 (852)
.|+|+|++... ...-.-+|||.|++.||-.|+..|.+
T Consensus 49 ~F~~~v~i~g~---~~~G~G~SKK~Aeq~AA~~AL~~L~~ 85 (89)
T 2cpn_A 49 EFTMTCRVERF---IEIGSGTSKKLAKRNAAAKMLLRVSG 85 (89)
T ss_dssp EEEEEEEETTE---EEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred eEEEEEEECCE---EEEeeeCCHHHHHHHHHHHHHHHHHh
Confidence 57889988752 11244579999999999999999963
No 70
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=89.22 E-value=0.69 Score=39.24 Aligned_cols=37 Identities=14% Similarity=-0.012 Sum_probs=28.3
Q ss_pred eEEEEEEcCCCCCCccccccCcHHHHHHHHHHHHHHHHHh
Q 003062 45 MGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLHQ 84 (852)
Q Consensus 45 ~~~~~v~LP~~~p~~~~~~~~s~~~Ak~~aAf~Ac~~L~~ 84 (852)
.|+|+|++-.. -..-.-+|||.|++.||-.|+..|-+
T Consensus 48 ~F~~~v~v~g~---~~~G~G~SKK~Aeq~AA~~AL~~L~~ 84 (88)
T 3adl_A 48 EFTMTCRVERF---IEIGSGTSKKLAKRNAAAKMLLRVHT 84 (88)
T ss_dssp EEEEEEEETTE---EEEEEESSHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEEECCE---EEEEeeCCHHHHHHHHHHHHHHHHHc
Confidence 57888888652 11244579999999999999999964
No 71
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=88.41 E-value=0.65 Score=37.30 Aligned_cols=36 Identities=11% Similarity=-0.088 Sum_probs=28.0
Q ss_pred eEEEEEEcCCCCCCccccccCcHHHHHHHHHHHHHHHHH
Q 003062 45 MGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLH 83 (852)
Q Consensus 45 ~~~~~v~LP~~~p~~~~~~~~s~~~Ak~~aAf~Ac~~L~ 83 (852)
.|+|+|.+... -....-+|||.|++.||-.|+..|.
T Consensus 33 ~F~~~v~v~~~---~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 33 EFTITCRVETF---VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp EEEEEEEETTE---EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCE---EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 58899988752 1124457999999999999999885
No 72
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.30 E-value=1.2 Score=38.55 Aligned_cols=69 Identities=22% Similarity=0.180 Sum_probs=42.5
Q ss_pred CChhhHHHHHHHhC-CC-cee-eEEeeecCCceEEEEEEEECC-EEEEeEEeeCCHHHHHHHHHHHHHHHhhh
Q 003062 779 LQPARELNEYCQKH-HF-SMK-KTVAPRINGKAAVTVEVHANG-TLFKHTHADADKETAKKVASKEVLKSLKA 847 (852)
Q Consensus 779 ~~P~~~L~e~~~~~-~~-~~~-~~~~~~~~g~~~~~~~v~v~~-~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~ 847 (852)
.+|+..|+...+.. +- ... |..-...+|...=.|++.+.= +.+.++|.|+.+.+|+.+||..|+++|+.
T Consensus 17 p~PKnLL~~ViqrA~~ss~~kd~l~~~~t~g~k~K~~tl~l~WP~~mef~a~G~rK~eAE~kAAA~AC~kLK~ 89 (119)
T 2db2_A 17 PQPKNLLNSVIGRALGISHAKDKLVYVHTNGPKKKKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKG 89 (119)
T ss_dssp SCHHHHHHHHHHHHTTHHHHHHHEEEEECCSSSSEEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHccCchhhheeEEeecCCceeEEEEEecCCCcEEEEeeccchHHHHHHHHHHHHHHHHH
Confidence 58999998877642 21 011 111112333221245555532 22335899999999999999999999985
No 73
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=88.29 E-value=0.16 Score=58.46 Aligned_cols=29 Identities=34% Similarity=0.534 Sum_probs=19.4
Q ss_pred CCcchhhHHHHHhhcccccCCCcEEEEEe
Q 003062 2 FDPSHTVCSFIQSRGRARMQNSDYLLMLK 30 (852)
Q Consensus 2 FD~p~t~~syIQSRGRAR~~~S~yi~m~e 30 (852)
||+|.|..+|+|+.||+|.+.++.++|+.
T Consensus 478 ~d~p~s~~~~~Qr~GRgR~~~g~~~~l~~ 506 (556)
T 4a2p_A 478 YEYSGNVTKMIQVRGRGRAAGSKCILVTS 506 (556)
T ss_dssp ETCCSCHHHHHHC--------CCEEEEES
T ss_pred eCCCCCHHHHHHhcCCCCCCCceEEEEEe
Confidence 89999999999999999999999999964
No 74
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=88.19 E-value=0.87 Score=37.38 Aligned_cols=37 Identities=19% Similarity=0.021 Sum_probs=27.6
Q ss_pred eEEEEEEcCCCCCCccccccCcHHHHHHHHHHHHHHHHH
Q 003062 45 MGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLH 83 (852)
Q Consensus 45 ~~~~~v~LP~~~p~~~~~~~~s~~~Ak~~aAf~Ac~~L~ 83 (852)
.|+|+|.+.... -.....+|||.|++.||-.|+..|.
T Consensus 37 ~F~~~v~v~g~~--~~~G~G~sKK~Aeq~AA~~al~~L~ 73 (76)
T 3adj_A 37 QFTCTVEIGGIK--YTGAATRTKKDAEISAGRTALLAIQ 73 (76)
T ss_dssp EEEEEEEETTEE--EECCCBSSHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEECCEE--EEEeccCCHHHHHHHHHHHHHHHHh
Confidence 578888886421 0113458999999999999999985
No 75
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=87.86 E-value=0.093 Score=62.54 Aligned_cols=30 Identities=30% Similarity=0.556 Sum_probs=16.5
Q ss_pred CCCcchhhHHHHHhhcccccCCCcEEEEEe
Q 003062 1 MFDPSHTVCSFIQSRGRARMQNSDYLLMLK 30 (852)
Q Consensus 1 rFD~p~t~~syIQSRGRAR~~~S~yi~m~e 30 (852)
+||+|.+..+|+||+||+|.+++.+++|+.
T Consensus 485 ~~d~p~s~~~~~Qr~GRGR~~~g~~~~l~~ 514 (696)
T 2ykg_A 485 LYEYVGNVIKMIQTRGRGRARGSKCFLLTS 514 (696)
T ss_dssp EESCC--CCCC---------CCCEEEEEES
T ss_pred EeCCCCCHHHHHHhhccCcCCCceEEEEec
Confidence 489999999999999999999998888865
No 76
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=87.66 E-value=0.94 Score=38.00 Aligned_cols=39 Identities=15% Similarity=-0.017 Sum_probs=29.2
Q ss_pred eEEEEEEcCCCCCCccccccCcHHHHHHHHHHHHHHHHHhcC
Q 003062 45 MGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLHQIG 86 (852)
Q Consensus 45 ~~~~~v~LP~~~p~~~~~~~~s~~~Ak~~aAf~Ac~~L~~~G 86 (852)
.|+|+|++-. ....-..+|||.|++.||-.|+..|.+..
T Consensus 40 ~F~~~v~v~~---~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~ 78 (84)
T 2dix_A 40 TFTFRVTVGD---ITCTGEGTSKKLAKHRAAEAAINILKANA 78 (84)
T ss_dssp EEEEEEEETT---EEEEECSSCTTHHHHHHHHHHHHHHHHTC
T ss_pred eEEEEEEECC---EEEEeeeCCHHHHHHHHHHHHHHHHhccc
Confidence 4778888853 11224458999999999999999997544
No 77
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=87.44 E-value=1.1 Score=36.08 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=35.7
Q ss_pred CCCeEEE-c-C-----CeEEEEEEcCCCCCCccccccCcHHHHHHHHHHHHHHHHHhc
Q 003062 35 PTPKFDI-N-K-----EMGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLHQI 85 (852)
Q Consensus 35 ~~P~~~~-~-~-----~~~~~~v~LP~~~p~~~~~~~~s~~~Ak~~aAf~Ac~~L~~~ 85 (852)
..|+|.+ . . -.|+|+|.+-... . .-.-+|||.|++.||-.|+..|...
T Consensus 15 ~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~-~--~G~G~SKK~Aeq~AA~~al~~L~~~ 69 (71)
T 2b7v_A 15 PGLKYDFLSESGESHAKSFVMSVVVDGQF-F--EGSGRNKKLAKARAAQSALATVFNL 69 (71)
T ss_dssp CSCEEEEEECCCCTTTCCEEEEEECSSCE-E--EEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEeECCCCCceEEEEEEECCEE-E--EEeeCCHHHHHHHHHHHHHHHHHhc
Confidence 5678875 1 1 2699999987642 1 2335799999999999999999764
No 78
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=87.31 E-value=0.96 Score=36.79 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=29.1
Q ss_pred eEEEEEEcCCCCCCccccccCcHHHHHHHHHHHHHHHHHh
Q 003062 45 MGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLHQ 84 (852)
Q Consensus 45 ~~~~~v~LP~~~p~~~~~~~~s~~~Ak~~aAf~Ac~~L~~ 84 (852)
.|+|+|.+.... . ...-+|||.|++.||-.|+..|.+
T Consensus 35 ~F~~~v~v~g~~-~--~G~G~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 35 LFVMSVEVNGQV-F--EGSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp EEEEEEESSSSE-E--EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEECCEE-E--EeecCCHHHHHHHHHHHHHHHHhc
Confidence 588888886533 1 233579999999999999999975
No 79
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=87.27 E-value=1.1 Score=38.09 Aligned_cols=36 Identities=17% Similarity=0.006 Sum_probs=27.3
Q ss_pred eEEEEEEcCCCCCCccccccCcHHHHHHHHHHHHHHHHH
Q 003062 45 MGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLH 83 (852)
Q Consensus 45 ~~~~~v~LP~~~p~~~~~~~~s~~~Ak~~aAf~Ac~~L~ 83 (852)
.|+|+|++-.. ...-.-+|||.|++.||-.|+..|-
T Consensus 39 ~F~~~v~v~g~---~~~G~G~SKK~Aeq~AA~~AL~~L~ 74 (89)
T 1uhz_A 39 EFVMQVKVGNE---VATGTGPNKKIAKKNAAEAMLLQLG 74 (89)
T ss_dssp EEEEEEEETTE---EEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred eEEEEEEECCE---EEEEeeCCHHHHHHHHHHHHHHHHh
Confidence 57888888641 1123357999999999999999984
No 80
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=87.06 E-value=0.16 Score=59.40 Aligned_cols=79 Identities=8% Similarity=-0.069 Sum_probs=53.3
Q ss_pred cEEEcCcCCceEEEEeecCCCCCCCCCCCCCCCcchHHHHHHHHhCcccccCCceeEEEeeccccccccchhhhhccCCC
Q 003062 293 SVVCTPHSGQIYYITGVLGHLNANSLFTRNDGGAITYKKHYEERYGIQLCFDQELLLNGRRIFHAQNYLSKCRQEKQREP 372 (852)
Q Consensus 293 ~~V~~~~~~~~Y~v~~i~~dl~p~S~f~~~~~~~~ty~~yy~~k~~~~i~~~~QPlL~~~~~~~r~N~L~~~~~~~~~~~ 372 (852)
..|.+.|+.++|.+.+|. +.+|.|.|=. ..+|+.+||++||.+ .+.+||++.-.+-.++ +.+.-
T Consensus 191 ~~v~~~y~~~~~~~~~~~-~~~p~~~~l~---~~~s~~~y~~~k~~~--~~~~~~~vv~~~~~~~----------~~~~i 254 (685)
T 3ho1_A 191 KRVRNAYDRRTWELLRLG-EEDPKELPLP---GGLSLLDYHASKGRL--QGREGGRVAWVADPKD----------PRKPI 254 (685)
T ss_dssp SEEEESSSCCEECCCEEE-CCCTTCC---------CSTTTTTTTSTT--TTSCCCSEEEECSCC-------------CCE
T ss_pred HHHhhhcccceEEEeecc-cCCchheecC---CCccHHHHHhhcccc--cccCCceEEEEecccc----------CCCcc
Confidence 689999998899999998 8999998742 268999999998776 7788999866543331 00000
Q ss_pred CcceeecCcchhhhhc
Q 003062 373 SKISFELPPELCRIIM 388 (852)
Q Consensus 373 ~~~~~~L~PElC~~~~ 388 (852)
.+-.++|+||+| +..
T Consensus 255 ~~~~~~l~p~l~-m~~ 269 (685)
T 3ho1_A 255 PHLTGLLVPVLT-LED 269 (685)
T ss_dssp EEETTSEEEECC-TTT
T ss_pred eeeeeeechHhH-HHH
Confidence 111268999999 443
No 81
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=86.13 E-value=1.3 Score=38.30 Aligned_cols=35 Identities=14% Similarity=-0.067 Sum_probs=26.4
Q ss_pred eEEEEEEcCCCCCCccc--cccCcHHHHHHHHHHHHHHHHH
Q 003062 45 MGICTLYLPNNCPIQTV--IAQGNIKTLKQTACLEACKKLH 83 (852)
Q Consensus 45 ~~~~~v~LP~~~p~~~~--~~~~s~~~Ak~~aAf~Ac~~L~ 83 (852)
.|+|+|.+-. +.. -..+|||.|++.||-.|+..|.
T Consensus 47 ~F~~~V~v~g----~~~~~G~G~SKK~Aeq~AA~~AL~~L~ 83 (98)
T 1x47_A 47 PFGASVTIDG----VTYGSGTASSKKLAKNKAARATLEILI 83 (98)
T ss_dssp CEEEEEEETT----EEEEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred cEEEEEEECC----EEEEEeeeCCHHHHHHHHHHHHHHHHH
Confidence 3677887754 222 3458999999999999999985
No 82
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=85.39 E-value=0.27 Score=59.57 Aligned_cols=30 Identities=33% Similarity=0.547 Sum_probs=20.8
Q ss_pred CCCcchhhHHHHHhhcccccCCCcEEEEEe
Q 003062 1 MFDPSHTVCSFIQSRGRARMQNSDYLLMLK 30 (852)
Q Consensus 1 rFD~p~t~~syIQSRGRAR~~~S~yi~m~e 30 (852)
.||+|.|..+|+|+.||+|.+.+++++|+.
T Consensus 718 ~yd~p~s~~~~iQr~GRGR~~~g~~i~l~~ 747 (797)
T 4a2q_A 718 LYEYSGNVTKMIQVRGRGRAAGSKCILVTS 747 (797)
T ss_dssp EESCCSCHHHHHTC-------CCCEEEEEC
T ss_pred EeCCCCCHHHHHHhcCCCCCCCceEEEEEe
Confidence 389999999999999999999999999964
No 83
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=85.20 E-value=0.25 Score=61.00 Aligned_cols=30 Identities=33% Similarity=0.547 Sum_probs=20.7
Q ss_pred CCCcchhhHHHHHhhcccccCCCcEEEEEe
Q 003062 1 MFDPSHTVCSFIQSRGRARMQNSDYLLMLK 30 (852)
Q Consensus 1 rFD~p~t~~syIQSRGRAR~~~S~yi~m~e 30 (852)
.||+|.|..+|+|+.||||.+++++++|+.
T Consensus 718 ~yD~p~s~~~~iQr~GRGR~~~g~vi~Li~ 747 (936)
T 4a2w_A 718 LYEYSGNVTKMIQVRGRGRAAGSKCILVTS 747 (936)
T ss_dssp EESCCSCSHHHHCC-------CCCEEEEES
T ss_pred EeCCCCCHHHHHHhcCCCCCCCCEEEEEEe
Confidence 389999999999999999999999998864
No 84
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=84.09 E-value=1.6 Score=36.68 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=26.8
Q ss_pred eEEEEEEcCCCCCCccccccCcHHHHHHHHHHHHHHHHH
Q 003062 45 MGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLH 83 (852)
Q Consensus 45 ~~~~~v~LP~~~p~~~~~~~~s~~~Ak~~aAf~Ac~~L~ 83 (852)
.|+|+|++....- .....+|||.|++.||-.|+..|.
T Consensus 39 ~F~v~V~v~g~~~--~~G~G~SKK~AEq~AA~~AL~~L~ 75 (85)
T 2khx_A 39 TYTVAVYFKGERI--GCGKGPSIQQAEMGAAMDALEKYN 75 (85)
T ss_dssp CEEEEEEETTEEC--CCEEESSHHHHHHHHHHHHHTTCC
T ss_pred cEEEEEEECCEEE--EEEeeCCHHHHHHHHHHHHHHHHh
Confidence 5888888865210 113357999999999999988764
No 85
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=84.02 E-value=0.99 Score=38.40 Aligned_cols=41 Identities=17% Similarity=-0.015 Sum_probs=28.1
Q ss_pred eEEEEEEcCCCCCCccccccCcHHHHHHHHHHHHHHHHHhcCCC
Q 003062 45 MGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLHQIGAL 88 (852)
Q Consensus 45 ~~~~~v~LP~~~p~~~~~~~~s~~~Ak~~aAf~Ac~~L~~~G~l 88 (852)
.|+|+|.+-.. ...-.-+|||.|++.||-.|+.+|...+.+
T Consensus 46 ~F~~~v~v~g~---~~~G~G~SKK~Aeq~AA~~aL~~L~~~~~~ 86 (90)
T 3llh_A 46 NFTFRVTVGDT---SCTGQGPSKKAAKHKAAEVALKHLKGGSML 86 (90)
T ss_dssp CEEEEEEETTE---EEEEEESSHHHHHHHHHHHHHHHHC-----
T ss_pred cEEEEEEECCE---EEEEEeCCHHHHHHHHHHHHHHHHHhcccc
Confidence 47888888642 112445799999999999999999877654
No 86
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=83.47 E-value=0.18 Score=57.76 Aligned_cols=29 Identities=31% Similarity=0.564 Sum_probs=27.1
Q ss_pred CCcchhhHHHHHhhcccccCCCcEEEEEe
Q 003062 2 FDPSHTVCSFIQSRGRARMQNSDYLLMLK 30 (852)
Q Consensus 2 FD~p~t~~syIQSRGRAR~~~S~yi~m~e 30 (852)
||+|.|..+|+|+.||||.+.+++++|+.
T Consensus 477 ~d~p~s~~~~~Qr~GRgR~~~g~~~~l~~ 505 (555)
T 3tbk_A 477 YEYVGNVIKMIQTRGRGRARDSKCFLLTS 505 (555)
T ss_dssp ESCCSSCCCEECSSCCCTTTSCEEEEEES
T ss_pred eCCCCCHHHHHHhcCcCcCCCceEEEEEc
Confidence 89999999999999999999999998864
No 87
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=82.83 E-value=0.61 Score=46.49 Aligned_cols=28 Identities=11% Similarity=0.267 Sum_probs=21.1
Q ss_pred CCcchhhHHHHHhhcccccC--CCcEEEEE
Q 003062 2 FDPSHTVCSFIQSRGRARMQ--NSDYLLML 29 (852)
Q Consensus 2 FD~p~t~~syIQSRGRAR~~--~S~yi~m~ 29 (852)
||+|.+..+|+|+.|||-+. ...-++++
T Consensus 106 ~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~ 135 (212)
T 3eaq_A 106 YRLPDRAEAYQHRSGRTGRAGRGGRVVLLY 135 (212)
T ss_dssp SSCCSSHHHHHHHHTTBCCCC--BEEEEEE
T ss_pred CCCCcCHHHHHHHhcccCCCCCCCeEEEEE
Confidence 79999999999999999443 34444554
No 88
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=81.42 E-value=2.6 Score=34.44 Aligned_cols=38 Identities=24% Similarity=0.086 Sum_probs=28.2
Q ss_pred eEEEEEEcCCCCCCccccccCcHHHHHHHHHHHHHHHHHhc
Q 003062 45 MGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLHQI 85 (852)
Q Consensus 45 ~~~~~v~LP~~~p~~~~~~~~s~~~Ak~~aAf~Ac~~L~~~ 85 (852)
.|+++|.+-.. .. .-.-+|||.|++.||-.|+.+|.+.
T Consensus 35 ~F~~~v~v~g~-~~--~G~G~SKK~Aeq~AA~~al~~L~~~ 72 (75)
T 3p1x_A 35 RFVMEVEVDGQ-KF--QGAGSNKKVAKAYAALAALEKLFPD 72 (75)
T ss_dssp EEEEEEEETTE-EE--EEEESSHHHHHHHHHHHHHHHHCTT
T ss_pred eEEEEEEECCE-EE--EEEECCHHHHHHHHHHHHHHHHHcc
Confidence 57888888642 11 2335799999999999999998643
No 89
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=80.94 E-value=0.71 Score=44.31 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=17.8
Q ss_pred CCcchhhHHHHHhhcccccC
Q 003062 2 FDPSHTVCSFIQSRGRARMQ 21 (852)
Q Consensus 2 FD~p~t~~syIQSRGRAR~~ 21 (852)
||+|.+..+|+|+.|||-+.
T Consensus 106 ~d~p~~~~~~~qr~GR~~R~ 125 (172)
T 1t5i_A 106 YDMPEDSDTYLHRVARAGRF 125 (172)
T ss_dssp SSCCSSHHHHHHHHHHHTGG
T ss_pred ECCCCCHHHHHHHhcccccC
Confidence 89999999999999998443
No 90
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=80.61 E-value=2.5 Score=38.41 Aligned_cols=35 Identities=17% Similarity=0.099 Sum_probs=26.0
Q ss_pred eEEEEEEcCCCCCCccc---cccCcHHHHHHHHHHHHHHHHH
Q 003062 45 MGICTLYLPNNCPIQTV---IAQGNIKTLKQTACLEACKKLH 83 (852)
Q Consensus 45 ~~~~~v~LP~~~p~~~~---~~~~s~~~Ak~~aAf~Ac~~L~ 83 (852)
.|+|+|.+.. +.. ..++|||.|++.||-.|+..|.
T Consensus 56 ~F~v~V~v~g----~~~g~G~G~~SKK~AEQ~AA~~AL~~L~ 93 (128)
T 1whn_A 56 MFCSVVTVAE----QKYQSTLWDKSKKLAEQTAAIVCLRSQG 93 (128)
T ss_dssp CEEEEEEETT----EEEEESSCBSSHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEECC----EEEEEEeccCCHHHHHHHHHHHHHHHHh
Confidence 4678887754 222 3337999999999999999983
No 91
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=80.39 E-value=1.7 Score=38.75 Aligned_cols=48 Identities=8% Similarity=-0.005 Sum_probs=35.0
Q ss_pred CCeEEE---cC----CeEEEEEEcCCCCCCccccccCcHHHHHHHHHHHHHHHHHhcC
Q 003062 36 TPKFDI---NK----EMGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLHQIG 86 (852)
Q Consensus 36 ~P~~~~---~~----~~~~~~v~LP~~~p~~~~~~~~s~~~Ak~~aAf~Ac~~L~~~G 86 (852)
.|+|.+ .+ -.|+|+|++-...- .-..+|||.|++.||-.|+.+|.+.+
T Consensus 49 ~p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~---~G~G~SKK~AEq~AA~~AL~~L~~~~ 103 (114)
T 2ljh_A 49 GLIYKLESQTGPVHAPLFTISVEVDGQKY---LGQGRSKKVARIEAAATALRSFIQFK 103 (114)
T ss_dssp CCEEEEEEEECCSSSCEEEEEEEETTEEE---EEEESSHHHHHHHHHHHHHHHHCCCT
T ss_pred CCeEEEEEeeCCCCCCeEEEEEEECCEEE---EeeeCCHHHHHHHHHHHHHHHHHcCC
Confidence 377765 11 36999998865321 23347999999999999999998655
No 92
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=80.00 E-value=1.8 Score=36.86 Aligned_cols=37 Identities=24% Similarity=0.103 Sum_probs=27.8
Q ss_pred eEEEEEEcCCCCCCccccccCcHHHHHHHHHHHHHHHHHh
Q 003062 45 MGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLHQ 84 (852)
Q Consensus 45 ~~~~~v~LP~~~p~~~~~~~~s~~~Ak~~aAf~Ac~~L~~ 84 (852)
.|+|+|.+.... . .-.-+|||.|++.||-.|+.+|.+
T Consensus 45 ~F~v~V~v~g~~-~--~G~G~SKK~AEq~AA~~AL~~L~~ 81 (91)
T 2l33_A 45 RFVMEVEVDGQK-F--QGAGSNKKVAKAYAALAALEKLFP 81 (91)
T ss_dssp EEEEEEEETTEE-E--EEEESSHHHHHHHHHHHHHHHHCC
T ss_pred eEEEEEEECCEE-E--EeeeCCHHHHHHHHHHHHHHHHhh
Confidence 467888876532 1 233479999999999999999853
No 93
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=79.36 E-value=0.68 Score=43.94 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=17.0
Q ss_pred CCcchhhHHHHHhhcccccC
Q 003062 2 FDPSHTVCSFIQSRGRARMQ 21 (852)
Q Consensus 2 FD~p~t~~syIQSRGRAR~~ 21 (852)
||+|.+..+|+|+.|||-+.
T Consensus 105 ~~~p~~~~~~~qr~GR~gR~ 124 (165)
T 1fuk_A 105 YDLPANKENYIHRIGRGGRF 124 (165)
T ss_dssp SSCCSSGGGGGGSSCSCC--
T ss_pred eCCCCCHHHHHHHhcccccC
Confidence 79999999999999998443
No 94
>2l6m_A Protein dicer; DSRBD, hydrolase; NMR {Schizosaccharomyces pombe}
Probab=79.00 E-value=22 Score=30.07 Aligned_cols=66 Identities=9% Similarity=0.147 Sum_probs=47.9
Q ss_pred hhHHHHHHHhCCCc-eeeEE-eeecCC------------ceEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhh
Q 003062 782 ARELNEYCQKHHFS-MKKTV-APRING------------KAAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKA 847 (852)
Q Consensus 782 ~~~L~e~~~~~~~~-~~~~~-~~~~~g------------~~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~ 847 (852)
-..++++.+++||+ +.+.- +..+.. ...|...++++|..++ .|.+.+++.|+..-..+.++.++.
T Consensus 26 ~~qi~Q~Lq~QGC~~~~~qCVI~e~~~~~~~L~~~~~~~T~~Y~~S~~~H~~IV~-~~Ks~~~~Nsq~im~~~L~~L~q~ 104 (121)
T 2l6m_A 26 EHKVYQLLKDQGCEDFGTKCVIEEVKSSHKTLLNTELHLTKYYGFSFFRHGNIVA-YGKSRKVANAKYIMKQRLLKLLED 104 (121)
T ss_dssp HHHHHHHHTTTTCCCEEEEEEEEECCCCSCCSSSSCTTCCEEEEEEEEETTEEEE-EEEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcHHHhCCeEEEEehhhhhhhHHHhhhhhheeeeeEEEEeCcEEE-ehhhhhhhhHHHHHHHHHHHHHHH
Confidence 36788889999984 44331 111111 2468889999999887 899999999999888877777765
Q ss_pred h
Q 003062 848 S 848 (852)
Q Consensus 848 ~ 848 (852)
.
T Consensus 105 ~ 105 (121)
T 2l6m_A 105 K 105 (121)
T ss_dssp T
T ss_pred H
Confidence 4
No 95
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=78.14 E-value=1.1 Score=43.42 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=18.1
Q ss_pred CCcchhhHHHHHhhcccccC
Q 003062 2 FDPSHTVCSFIQSRGRARMQ 21 (852)
Q Consensus 2 FD~p~t~~syIQSRGRAR~~ 21 (852)
||+|.+..+|+|+.|||-+.
T Consensus 121 ~d~p~s~~~~~Qr~GR~~R~ 140 (185)
T 2jgn_A 121 FDLPSDIEEYVHRIGRTGRV 140 (185)
T ss_dssp SSCCSSHHHHHHHHTTBCCT
T ss_pred eCCCCCHHHHHHHccccCCC
Confidence 89999999999999998554
No 96
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=78.13 E-value=0.57 Score=38.49 Aligned_cols=37 Identities=19% Similarity=0.028 Sum_probs=27.7
Q ss_pred eEEEEEEcCCCCCCccccccCcHHHHHHHHHHHHHHHHHh
Q 003062 45 MGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLHQ 84 (852)
Q Consensus 45 ~~~~~v~LP~~~p~~~~~~~~s~~~Ak~~aAf~Ac~~L~~ 84 (852)
.|+|+|.+.. .......+|||.|++.||-.|+..|.+
T Consensus 39 ~F~~~v~i~~---~~~~G~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 39 NFITACIVGS---IVTEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CSSEEEEETT---EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred cEEEEEEECC---EEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 4778888853 222244589999999999999999854
No 97
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=78.11 E-value=1.1 Score=43.05 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=16.3
Q ss_pred CCcc------hhhHHHHHhhcccccC
Q 003062 2 FDPS------HTVCSFIQSRGRARMQ 21 (852)
Q Consensus 2 FD~p------~t~~syIQSRGRAR~~ 21 (852)
||+| .+..+|+|+.|||-+.
T Consensus 109 ~d~p~~~~~~~~~~~~~qr~GR~gR~ 134 (175)
T 2rb4_A 109 FDLPVKQGEEPDYETYLHRIGRTGRF 134 (175)
T ss_dssp SSCCC--CCSCCHHHHHHHHCBC---
T ss_pred eCCCCCccccCCHHHHHHHhcccccC
Confidence 7999 9999999999999543
No 98
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=78.01 E-value=2.3 Score=36.69 Aligned_cols=35 Identities=9% Similarity=0.028 Sum_probs=26.4
Q ss_pred eEEEEEEcCCCCCCccccccCcHHHHHHHHHHHHHHHH
Q 003062 45 MGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKL 82 (852)
Q Consensus 45 ~~~~~v~LP~~~p~~~~~~~~s~~~Ak~~aAf~Ac~~L 82 (852)
.|+++|++.... . .-.-+|||.|++.||..|+.+|
T Consensus 47 ~F~~~v~v~g~~-~--~G~G~SKK~Aeq~AA~~aL~~L 81 (97)
T 2dmy_A 47 VFTMSVDVDGTT-Y--EASGPSKKTAKLHVAVKVLQAM 81 (97)
T ss_dssp EEEEEEEETTEE-E--EEEESSHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCEE-E--EEeeCCHHHHHHHHHHHHHHHh
Confidence 467788776532 1 2334799999999999999988
No 99
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=76.84 E-value=7.8 Score=33.65 Aligned_cols=66 Identities=14% Similarity=0.142 Sum_probs=41.7
Q ss_pred ChhhHHHHHHHhCCC------ceeeEEeeecCCceEEEEEEEECC-----EEEEeEEeeCCHHHHHHHHHHHHHHHhhhh
Q 003062 780 QPARELNEYCQKHHF------SMKKTVAPRINGKAAVTVEVHANG-----TLFKHTHADADKETAKKVASKEVLKSLKAS 848 (852)
Q Consensus 780 ~P~~~L~e~~~~~~~------~~~~~~~~~~~g~~~~~~~v~v~~-----~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~~ 848 (852)
+.+..|+++|++... .+.|...........| |+|..=. ...| ..-.|++.||+.||-+|+++|.+.
T Consensus 5 sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~~~~~-c~v~LP~~splr~i~g--~~~~sk~~AK~sAAf~Ac~~L~~~ 81 (102)
T 2kou_A 5 SSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTI-CRITLPANAPISEIES--SLLPSTEAAKKDACLKAVHELHNL 81 (102)
T ss_dssp HHHHHHHHHHTTSSSCTTCCSSCEEEEEECCGGGCEE-EEEECCTTCSSCCEEE--EEESSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCccccCccceEEEeEeecCCCeE-EEEECCCCCCCCeeeC--CccccHHHHHHHHHHHHHHHHHHC
Confidence 456788889887532 2334411111112456 8887633 2222 334999999999999999999765
No 100
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=76.78 E-value=1.2 Score=43.52 Aligned_cols=20 Identities=15% Similarity=0.436 Sum_probs=17.6
Q ss_pred CCcchhhHHHHHhhcccccC
Q 003062 2 FDPSHTVCSFIQSRGRARMQ 21 (852)
Q Consensus 2 FD~p~t~~syIQSRGRAR~~ 21 (852)
||+|.+..+|+|+.|||-+.
T Consensus 129 ~d~p~~~~~~~qr~GR~gR~ 148 (191)
T 2p6n_A 129 YDMPEEIENYVHRIGRTGCS 148 (191)
T ss_dssp SSCCSSHHHHHHHHTTSCC-
T ss_pred eCCCCCHHHHHHHhCccccC
Confidence 89999999999999999544
No 101
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=76.20 E-value=9.3 Score=32.94 Aligned_cols=80 Identities=24% Similarity=0.228 Sum_probs=56.9
Q ss_pred hhhhhhhhhHHhHHHHHHHH--HhcCCCCcchhhHHHhhccccHHHHHHHHhCCccccccccccCCCCcccCCCCCCCcc
Q 003062 453 ESLETLGDSFLKYAASQQLF--KTYQNHHEGLLSVKKDRIISNAALCKLGCDHKLPGFIRTEPFDPKMWMIPGDNSGSYE 530 (852)
Q Consensus 453 eRLE~LGDs~Lk~~~s~~l~--~~~p~~~eg~Ls~~r~~~vsN~~L~~~a~~~gL~~~i~~~~f~~~~w~~~~~~~~~~~ 530 (852)
.-|.-+|||.+.|+.|..|- ..+|. | .-|-|..|+..-...||...+..
T Consensus 13 K~LakfGDSLvNfl~SlALse~lG~Pt---g-------~rVPnaSLaiale~agL~~~~pR------------------- 63 (133)
T 1ztd_A 13 KGLAKFGDSLINFLYSLALTEFLGKPT---G-------DRVPNASLAIALELTGLSKNLRR------------------- 63 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCC---C-------CCCCHHHHHHHHHHHTGGGGCCG-------------------
T ss_pred chHHHHhHHHHHHHHHHHHHHHhCCCC---C-------CCCCChHHHHHHHHhhhhhcCCc-------------------
Confidence 46889999999999999875 34444 3 25789999877777777655511
Q ss_pred cCccccccccccccccccccccchhHHHHHHHHHHHhhcCCh--HHHHHhhh
Q 003062 531 LNDHSLFNERKIYVTGRKKVKSKTVADVVEALIGAFLSTGGE--NVGLIFLD 580 (852)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~K~lADv~EAliGA~yl~~G~--~~a~~~~~ 580 (852)
.....-.|..||+|.-+++.|-+ +.|..+++
T Consensus 64 -------------------~DKh~kGd~aEA~iAyAWleG~is~eEaveilk 96 (133)
T 1ztd_A 64 -------------------VDKHAKGDYAEALIAKAWLMGLISEREAVEIIK 96 (133)
T ss_dssp -------------------GGTTCHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred -------------------ccccCccHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 11234579999999999999864 45656554
No 102
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=73.55 E-value=1.3 Score=46.67 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=19.7
Q ss_pred CCcchhhHHHHHhhccc-ccC-CCcEEEEE
Q 003062 2 FDPSHTVCSFIQSRGRA-RMQ-NSDYLLML 29 (852)
Q Consensus 2 FD~p~t~~syIQSRGRA-R~~-~S~yi~m~ 29 (852)
||+|.+..+|+|+.||| |.- ...-++++
T Consensus 103 ~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~ 132 (300)
T 3i32_A 103 YRMPDRAEAYQHRSGRTGRAGRGGRVVLLY 132 (300)
T ss_dssp SSCCSSTTHHHHHHTCCC-----CEEEEEE
T ss_pred cCCCCCHHHHHHHccCcCcCCCCceEEEEe
Confidence 79999999999999999 442 34444443
No 103
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=72.65 E-value=13 Score=31.82 Aligned_cols=63 Identities=11% Similarity=-0.026 Sum_probs=38.2
Q ss_pred hHHHHHhhcccccCCCcEEEEEeccccCCCeEEEcCCeEEEEEEcCCCCCCccccccCcHHHHHHHHHHHHHHHHH
Q 003062 8 VCSFIQSRGRARMQNSDYLLMLKRYFKPTPKFDINKEMGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLH 83 (852)
Q Consensus 8 ~~syIQSRGRAR~~~S~yi~m~e~~~~~~P~~~~~~~~~~~~v~LP~~~p~~~~~~~~s~~~Ak~~aAf~Ac~~L~ 83 (852)
+..|.|.+|.. . .|-+.-+.--+..| .|+|+|.+-...- ..-.-+|||.|++.||-.|+..|.
T Consensus 20 LqE~~Q~~~~~--p--~Y~~~~~~Gp~H~~-------~F~v~v~i~g~~~--~~G~G~SKK~Aeq~AA~~AL~~L~ 82 (97)
T 1x49_A 20 LNKYRQMHGVA--I--TYKELSTSGPPHDR-------RFTFQVLIDEKEF--PEAKGRSKQEARNAAAKLAVDILD 82 (97)
T ss_dssp HHHHHHHHTCC--E--EEEEEEEESCSSSC-------EEEEEEEESSCCC--CCEEESSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCC--C--eEEEEEeeCCCCCC-------cEEEEEEECCEEE--EEEeeCCHHHHHHHHHHHHHHHHH
Confidence 34577777652 2 56544221001122 4678888764211 113347999999999999999995
No 104
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=71.61 E-value=1.7 Score=47.29 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=20.7
Q ss_pred CCcchhhHHHHHhhcccccC--CCcEEEE
Q 003062 2 FDPSHTVCSFIQSRGRARMQ--NSDYLLM 28 (852)
Q Consensus 2 FD~p~t~~syIQSRGRAR~~--~S~yi~m 28 (852)
||+|.+..+|+|+.|||-+. ....+++
T Consensus 333 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l 361 (400)
T 1s2m_A 333 FDFPKTAETYLHRIGRSGRFGHLGLAINL 361 (400)
T ss_dssp SSCCSSHHHHHHHHCBSSCTTCCEEEEEE
T ss_pred eCCCCCHHHHHHhcchhcCCCCCceEEEE
Confidence 79999999999999999443 3344444
No 105
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=68.89 E-value=2.5 Score=45.76 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=17.9
Q ss_pred CCcchhhHHHHHhhcccccC
Q 003062 2 FDPSHTVCSFIQSRGRARMQ 21 (852)
Q Consensus 2 FD~p~t~~syIQSRGRAR~~ 21 (852)
||+|.+..+|+|+.|||-+.
T Consensus 325 ~~~p~s~~~~~Qr~GR~~R~ 344 (391)
T 1xti_A 325 YDMPEDSDTYLHRVARAGRF 344 (391)
T ss_dssp SSCCSSHHHHHHHHCBCSSS
T ss_pred eCCCCCHHHHHHhcccccCC
Confidence 79999999999999999553
No 106
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.90 E-value=8.3 Score=33.49 Aligned_cols=52 Identities=13% Similarity=-0.014 Sum_probs=39.8
Q ss_pred EEEEEEcCCCCCCccccccCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCccc
Q 003062 46 GICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLHQIGALTDNLLPDVV 97 (852)
Q Consensus 46 ~~~~v~LP~~~p~~~~~~~~s~~~Ak~~aAf~Ac~~L~~~G~ldd~LlP~~~ 97 (852)
-.||++|===.|+..+..-+.|..|.+-||=-||++|-+.|+||-+=-|...
T Consensus 51 K~~tl~l~WP~~mef~a~G~rK~eAE~kAAA~AC~kLK~Lgll~p~n~pl~h 102 (119)
T 2db2_A 51 KKVTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKGWGLLGPRNELFDA 102 (119)
T ss_dssp EEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHHHHHHTSSCTTCCCCCH
T ss_pred eEEEEEecCCCcEEEEeeccchHHHHHHHHHHHHHHHHHcCccCCCCCcchH
Confidence 4677776443444444445689999999999999999999999987777654
No 107
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=65.94 E-value=2.9 Score=45.50 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=16.1
Q ss_pred CCcc------hhhHHHHHhhccccc
Q 003062 2 FDPS------HTVCSFIQSRGRARM 20 (852)
Q Consensus 2 FD~p------~t~~syIQSRGRAR~ 20 (852)
||+| .++.+|+|+.|||-+
T Consensus 341 ~~~p~~~~~~~s~~~~~Qr~GR~gR 365 (412)
T 3fht_A 341 FDLPVDKDGNPDNETYLHRIGRTGR 365 (412)
T ss_dssp SSCCBCSSSSBCHHHHHHHHTTSSC
T ss_pred ECCCCCCCCCcchheeecccCcccC
Confidence 7888 578999999999943
No 108
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=65.24 E-value=3.7 Score=38.65 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=17.9
Q ss_pred CCcchhhHHHHHhhcccccC
Q 003062 2 FDPSHTVCSFIQSRGRARMQ 21 (852)
Q Consensus 2 FD~p~t~~syIQSRGRAR~~ 21 (852)
||+|.+..+|+|+.|||-+.
T Consensus 110 ~~~p~~~~~~~qr~GR~~R~ 129 (163)
T 2hjv_A 110 YDLPLEKESYVHRTGRTGRA 129 (163)
T ss_dssp SSCCSSHHHHHHHTTTSSCT
T ss_pred eCCCCCHHHHHHhccccCcC
Confidence 89999999999999998544
No 109
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=68.49 E-value=1.4 Score=42.09 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=16.9
Q ss_pred CCcchhhHHHHHhhccccc
Q 003062 2 FDPSHTVCSFIQSRGRARM 20 (852)
Q Consensus 2 FD~p~t~~syIQSRGRAR~ 20 (852)
||+|.+..+|+|+.|||-+
T Consensus 105 ~~~p~~~~~~~qr~GR~~R 123 (170)
T 2yjt_D 105 FDMPRSGDTYLHRIGRTAR 123 (170)
Confidence 7999999999999999633
No 110
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=63.51 E-value=8.6 Score=32.34 Aligned_cols=64 Identities=22% Similarity=0.083 Sum_probs=39.4
Q ss_pred hhhHHHHHhhcccccCCCcEEEEEeccccCCCeEEEcCC-eEEEEEEcCCCCCCccccccCcHHHHHHHHHHHHHHHHHh
Q 003062 6 HTVCSFIQSRGRARMQNSDYLLMLKRYFKPTPKFDINKE-MGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLHQ 84 (852)
Q Consensus 6 ~t~~syIQSRGRAR~~~S~yi~m~e~~~~~~P~~~~~~~-~~~~~v~LP~~~p~~~~~~~~s~~~Ak~~aAf~Ac~~L~~ 84 (852)
.-+..|.|.+|.. - .|- ++ .. |.- .- .|+|+|.+....- ..-..+|||.|++.||-.|+..|.+
T Consensus 10 t~LqE~~Q~~~~~---~-~Y~---~~-~G--p~H---~~~~F~~~v~v~g~~~--~~G~G~SKK~Aeq~AA~~AL~~L~~ 74 (88)
T 1x48_A 10 GLVNSFAQKKKLS---V-NYE---QC-EP--NSE---LPQRFICKCKIGQTMY--GTGSGVTKQEAKQLAAKEAYQKLLK 74 (88)
T ss_dssp HHHHHHHHHTTCC---E-EEE---EC-CC--SSS---SSCCEEEEEEESSCEE--EEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC---C-eeE---Ee-eC--CCC---CCceEEEEEEECCEEE--EEeecCCHHHHHHHHHHHHHHHHHh
Confidence 3456788998763 2 454 21 11 110 11 2678887754210 1134589999999999999999964
No 111
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=63.49 E-value=3.5 Score=44.47 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=17.4
Q ss_pred CCcch------hhHHHHHhhcccccC
Q 003062 2 FDPSH------TVCSFIQSRGRARMQ 21 (852)
Q Consensus 2 FD~p~------t~~syIQSRGRAR~~ 21 (852)
||+|. +..+|+|+.|||-+.
T Consensus 318 ~~~p~~~~~~~s~~~~~Qr~GR~gR~ 343 (395)
T 3pey_A 318 YDLPTLANGQADPATYIHRIGRTGRF 343 (395)
T ss_dssp SSCCBCTTSSBCHHHHHHHHTTSSCT
T ss_pred cCCCCCCcCCCCHHHhhHhccccccC
Confidence 78888 999999999999544
No 112
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=63.04 E-value=3.2 Score=48.93 Aligned_cols=19 Identities=37% Similarity=0.368 Sum_probs=17.2
Q ss_pred CCcchhhHHHHHhhccc-cc
Q 003062 2 FDPSHTVCSFIQSRGRA-RM 20 (852)
Q Consensus 2 FD~p~t~~syIQSRGRA-R~ 20 (852)
||.|.+..+|+|++||| |.
T Consensus 500 ~d~P~s~~~y~Qr~GRaGR~ 519 (673)
T 2wv9_A 500 VPSAITSASAAQRRGRVGRN 519 (673)
T ss_dssp CSEECCHHHHHHHHTTSSCC
T ss_pred ccCCCCHHHHHHHhhccCCC
Confidence 78999999999999997 54
No 113
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=60.44 E-value=3.9 Score=48.20 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=21.0
Q ss_pred CcchhhHHHHHhhccc-ccCCCcEEEEE
Q 003062 3 DPSHTVCSFIQSRGRA-RMQNSDYLLML 29 (852)
Q Consensus 3 D~p~t~~syIQSRGRA-R~~~S~yi~m~ 29 (852)
..|.+..+|||+.||| |....+.++++
T Consensus 526 G~p~s~~~~iQr~GRagR~~~G~~i~~~ 553 (661)
T 2d7d_A 526 GFLRSERSLIQTIGRAARNAEGRVIMYA 553 (661)
T ss_dssp TTTTSHHHHHHHHHTTTTSTTCEEEEEC
T ss_pred cCCCCHHHHHHHhCcccCCCCCEEEEEE
Confidence 3499999999999998 77666655554
No 114
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=60.13 E-value=4.2 Score=44.39 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=17.7
Q ss_pred CCcchhhHHHHHhhcccccC
Q 003062 2 FDPSHTVCSFIQSRGRARMQ 21 (852)
Q Consensus 2 FD~p~t~~syIQSRGRAR~~ 21 (852)
||+|.+..+|+|+.|||-+.
T Consensus 351 ~~~p~s~~~~~Qr~GR~gR~ 370 (417)
T 2i4i_A 351 FDLPSDIEEYVHRIGRTGRV 370 (417)
T ss_dssp SSCCSSHHHHHHHHTTBCC-
T ss_pred EcCCCCHHHHHHhcCccccC
Confidence 79999999999999999654
No 115
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=59.08 E-value=3.4 Score=45.00 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=16.5
Q ss_pred CCcchhhHHHHHhhcccccC
Q 003062 2 FDPSHTVCSFIQSRGRARMQ 21 (852)
Q Consensus 2 FD~p~t~~syIQSRGRAR~~ 21 (852)
||.|.+..+|+|+.|||-+.
T Consensus 355 ~~~p~s~~~~~Qr~GR~gR~ 374 (414)
T 3eiq_A 355 YDLPTNRENYIHRIGRGGRF 374 (414)
T ss_dssp SSCCSSTHHHHHHSCCC---
T ss_pred eCCCCCHHHhhhhcCcccCC
Confidence 79999999999999999543
No 116
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=58.42 E-value=4.6 Score=47.55 Aligned_cols=26 Identities=31% Similarity=0.287 Sum_probs=20.2
Q ss_pred cchhhHHHHHhhccc-ccCCCcEEEEE
Q 003062 4 PSHTVCSFIQSRGRA-RMQNSDYLLML 29 (852)
Q Consensus 4 ~p~t~~syIQSRGRA-R~~~S~yi~m~ 29 (852)
.|.+..+|||+.||| |....+.++++
T Consensus 521 ~p~s~~~~iQr~GRagR~~~G~~i~~~ 547 (664)
T 1c4o_A 521 FLRSERSLIQTIGRAARNARGEVWLYA 547 (664)
T ss_dssp GGGSHHHHHHHHGGGTTSTTCEEEEEC
T ss_pred CCCCHHHHHHHHCccCcCCCCEEEEEE
Confidence 499999999999999 76555555553
No 117
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=58.32 E-value=3.7 Score=45.04 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=22.5
Q ss_pred CCcc--hhhHHHHHhhcccccC------CCcEEEEEe
Q 003062 2 FDPS--HTVCSFIQSRGRARMQ------NSDYLLMLK 30 (852)
Q Consensus 2 FD~p--~t~~syIQSRGRAR~~------~S~yi~m~e 30 (852)
||+| .+..+|+|+.|||-+. ...-+++++
T Consensus 327 ~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~ 363 (414)
T 3oiy_A 327 WGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEE 363 (414)
T ss_dssp ESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEECC
T ss_pred ECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEEc
Confidence 7999 8999999999998663 455555543
No 118
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=58.00 E-value=13 Score=44.55 Aligned_cols=40 Identities=10% Similarity=0.058 Sum_probs=35.0
Q ss_pred eEEEEEEEECCEEEEeEEeeCCHHHHHHHHHHHHHHHhhhh
Q 003062 808 AAVTVEVHANGTLFKHTHADADKETAKKVASKEVLKSLKAS 848 (852)
Q Consensus 808 ~~~~~~v~v~~~~i~~~g~g~s~k~Ak~~AA~~AL~~L~~~ 848 (852)
..|.|.+.+-+-.+. .+.-.-||.|++.||+.||++|+-.
T Consensus 57 ~~~~c~~~lp~~~~~-~~~~~~kkd~eq~aa~~al~~~g~~ 96 (950)
T 3htx_A 57 CLYRCHLQLPEFSVV-SNVFKKKKDSEQSAAELALDKLGIR 96 (950)
T ss_dssp CEEEEEEECSSCEEE-CCCBSCHHHHHHHHHHHHHTTTTST
T ss_pred eeEEEEeeCCCceEe-cchhhccccHHHHHHHHHHHHhCCC
Confidence 479999999776666 6999999999999999999999854
No 119
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=57.90 E-value=3.1 Score=46.20 Aligned_cols=27 Identities=26% Similarity=0.111 Sum_probs=19.6
Q ss_pred CCcchhhHHHHHhhccc-ccC-CCcEEEE
Q 003062 2 FDPSHTVCSFIQSRGRA-RMQ-NSDYLLM 28 (852)
Q Consensus 2 FD~p~t~~syIQSRGRA-R~~-~S~yi~m 28 (852)
+|.|.+..+|+|++||| |.. .+..+++
T Consensus 258 ~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~ 286 (431)
T 2v6i_A 258 GPIAITPASAAQRRGRIGRNPEKLGDIYA 286 (431)
T ss_dssp EEEECCHHHHHHHHTTSSCCTTCCCCEEE
T ss_pred ccccCCHHHHHHhhhccCCCCCCCCeEEE
Confidence 46788999999999998 543 3444444
No 120
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=55.85 E-value=15 Score=31.36 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=26.2
Q ss_pred eEEEEEEcCCCCCCccccccCcHHHHHHHHHHHHHHHHH
Q 003062 45 MGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLH 83 (852)
Q Consensus 45 ~~~~~v~LP~~~p~~~~~~~~s~~~Ak~~aAf~Ac~~L~ 83 (852)
.|++.|.+.... .-..-.-+|||.|.+.||-+|+.+|-
T Consensus 37 ~F~v~v~i~~~~-~~g~G~G~SKK~AEQ~AA~~AL~~l~ 74 (94)
T 1t4n_A 37 NSIVECRVGDGT-VLGTGVGRNIKIAGIRAAENALRDKK 74 (94)
T ss_dssp SEEEEEECSSSC-EEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred eEEEEEEECCEE-EEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 477888886520 01113347999999999999988764
No 121
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=55.17 E-value=5.7 Score=45.31 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=21.3
Q ss_pred CCcchhhHHHHHhhcccccC--CCcEEEEE
Q 003062 2 FDPSHTVCSFIQSRGRARMQ--NSDYLLML 29 (852)
Q Consensus 2 FD~p~t~~syIQSRGRAR~~--~S~yi~m~ 29 (852)
||+|+++.+|+|+.|||-+. .+.-++++
T Consensus 311 ~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~ 340 (523)
T 1oyw_A 311 FDIPRNIESYYQETGRAGRDGLPAEAMLFY 340 (523)
T ss_dssp SSCCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred ECCCCCHHHHHHHhccccCCCCCceEEEEe
Confidence 79999999999999999443 34444443
No 122
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=55.06 E-value=2.5 Score=45.66 Aligned_cols=27 Identities=15% Similarity=0.244 Sum_probs=0.0
Q ss_pred CCcchhhHHHHHhhccccc--CCCcEEEE
Q 003062 2 FDPSHTVCSFIQSRGRARM--QNSDYLLM 28 (852)
Q Consensus 2 FD~p~t~~syIQSRGRAR~--~~S~yi~m 28 (852)
||+|.+..+|+|+.|||-+ +....+++
T Consensus 334 ~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~ 362 (394)
T 1fuu_A 334 YDLPANKENYIHRIGRGGRFGRKGVAINF 362 (394)
T ss_dssp -----------------------------
T ss_pred eCCCCCHHHHHHHcCcccCCCCCceEEEE
Confidence 7899999999999999944 33444444
No 123
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=53.41 E-value=34 Score=29.49 Aligned_cols=86 Identities=24% Similarity=0.291 Sum_probs=60.8
Q ss_pred hhhhHhhHHHHHHHHHHHHHH--hCCCCCcchHHHHHHHhcChHHHHHHHHHcCCchhhhccChhHHHHHHHHHhhhhhh
Q 003062 643 QRLEFLGDAVLDYLITVYLYN--KYPTLSPGDLTDMRSASVNNDCYALSSVKHGLHKHILHASQELYKWINITVDSFERL 720 (852)
Q Consensus 643 eRLEfLGDavLd~~v~~~l~~--~~p~~~~~~Lt~~r~~lv~n~~La~~a~~~gL~~~l~~~~~~~~~~i~~~~~~~~~~ 720 (852)
.-|.-+||++++++++--|-+ -+|.-. -|-|..||..-..-||.+.+. ..
T Consensus 13 K~LakfGDSLvNfl~SlALse~lG~Ptg~----------rVPnaSLaiale~agL~~~~p---R~--------------- 64 (133)
T 1ztd_A 13 KGLAKFGDSLINFLYSLALTEFLGKPTGD----------RVPNASLAIALELTGLSKNLR---RV--------------- 64 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCC----------CCCHHHHHHHHHHHTGGGGCC---GG---------------
T ss_pred chHHHHhHHHHHHHHHHHHHHHhCCCCCC----------CCCChHHHHHHHHhhhhhcCC---cc---------------
Confidence 568899999999999887754 334322 366777876666677777652 11
Q ss_pred ccccccCccccCCCChhhHHHHHHHhheeeeeCCCCHHHHHHHHHHhhc
Q 003062 721 SLESTFGWESETSFPKALGDIIESLSGAIFVDSGCNKEVVFESIRPLLE 769 (852)
Q Consensus 721 ~~~~~~~~~~~~~~~k~laD~~EAliGAi~~DsG~~~~~v~~~~~~~l~ 769 (852)
-...-+|+.||+++=.|+..-...+.+.+++..-+.
T Consensus 65 -------------DKh~kGd~aEA~iAyAWleG~is~eEaveilk~nl~ 100 (133)
T 1ztd_A 65 -------------DKHAKGDYAEALIAKAWLMGLISEREAVEIIKKNLY 100 (133)
T ss_dssp -------------GTTCHHHHHHHHHHHHHHTTSSCHHHHHHHHHTTCC
T ss_pred -------------cccCccHHHHHHHHHHHHhccccHHHHHHHHHhcCc
Confidence 113568999999999999988887777777665443
No 124
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=52.99 E-value=5.2 Score=45.83 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=21.5
Q ss_pred CCcchhhHHHHHhhcccccC--CCcEEEEEe
Q 003062 2 FDPSHTVCSFIQSRGRARMQ--NSDYLLMLK 30 (852)
Q Consensus 2 FD~p~t~~syIQSRGRAR~~--~S~yi~m~e 30 (852)
||+|.+..+|+|+.|||-+. .+.-++++.
T Consensus 417 ~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~ 447 (563)
T 3i5x_A 417 IGVPSELANYIHRIGRTARSGKEGSSVLFIC 447 (563)
T ss_dssp ESCCSSTTHHHHHHTTSSCTTCCEEEEEEEE
T ss_pred ECCCCchhhhhhhcCccccCCCCceEEEEEc
Confidence 79999999999999996444 334455543
No 125
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=52.39 E-value=6.7 Score=45.49 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=20.8
Q ss_pred CCcchhhHHHHHhhcccccC--CCcEEEE
Q 003062 2 FDPSHTVCSFIQSRGRARMQ--NSDYLLM 28 (852)
Q Consensus 2 FD~p~t~~syIQSRGRAR~~--~S~yi~m 28 (852)
||+|+++.+|+|+.|||-+. .+.-+++
T Consensus 342 ~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 342 HSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp SSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred eCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 79999999999999999443 3444444
No 126
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=52.19 E-value=6.6 Score=42.72 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=17.8
Q ss_pred CCcchhhHHHHHhhcccccC
Q 003062 2 FDPSHTVCSFIQSRGRARMQ 21 (852)
Q Consensus 2 FD~p~t~~syIQSRGRAR~~ 21 (852)
||+|.+..+|+|+.|||-+.
T Consensus 351 ~~~p~s~~~~~Qr~GR~gR~ 370 (410)
T 2j0s_A 351 YDLPNNRELYIHRIGRSGRY 370 (410)
T ss_dssp SSCCSSHHHHHHHHTTSSGG
T ss_pred ECCCCCHHHHHHhcccccCC
Confidence 79999999999999999543
No 127
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=49.57 E-value=6.6 Score=43.92 Aligned_cols=20 Identities=30% Similarity=0.210 Sum_probs=17.9
Q ss_pred CCcchhhHHHHHhhcccccC
Q 003062 2 FDPSHTVCSFIQSRGRARMQ 21 (852)
Q Consensus 2 FD~p~t~~syIQSRGRAR~~ 21 (852)
||.|.+..+|+|++|||-+.
T Consensus 280 ~d~p~s~~~~~QR~GRaGR~ 299 (459)
T 2z83_A 280 NPSPITSASAAQRRGRVGRN 299 (459)
T ss_dssp SCEECCHHHHHHHHTTSSCC
T ss_pred cCCCCCHHHHHHhccccCCC
Confidence 78999999999999998554
No 128
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=47.55 E-value=6.2 Score=46.24 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=19.0
Q ss_pred cchhhHHHHHhhccccc-CCCcEEEEE
Q 003062 4 PSHTVCSFIQSRGRARM-QNSDYLLML 29 (852)
Q Consensus 4 ~p~t~~syIQSRGRAR~-~~S~yi~m~ 29 (852)
.|.+..+||||.|||=+ +..+ +.|+
T Consensus 486 ~P~s~~syiQRiGRtGRg~~G~-i~lv 511 (666)
T 3o8b_A 486 VPQDAVSRSQRRGRTGRGRRGI-YRFV 511 (666)
T ss_dssp EECBHHHHHHHHTTBCSSSCEE-EEES
T ss_pred CcCCHHHHHHHhccCCCCCCCE-EEEE
Confidence 89999999999999844 3344 5553
No 129
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=46.45 E-value=7.4 Score=44.07 Aligned_cols=19 Identities=21% Similarity=0.504 Sum_probs=11.6
Q ss_pred CCcc------hhhHHHHHhhccc-cc
Q 003062 2 FDPS------HTVCSFIQSRGRA-RM 20 (852)
Q Consensus 2 FD~p------~t~~syIQSRGRA-R~ 20 (852)
||.| .++.+|+|+.||| |.
T Consensus 432 ~~~p~~~~~~~s~~~~~Qr~GRagR~ 457 (508)
T 3fho_A 432 YDMPLDQAGRPDPQTYLHRIGRTGRF 457 (508)
T ss_dssp ----CC-----CTHHHHHTTSCCC--
T ss_pred ECCCCcccCCCCHHHHHHHhhhcCCC
Confidence 6888 8899999999998 54
No 130
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=44.80 E-value=8.4 Score=44.40 Aligned_cols=20 Identities=15% Similarity=0.336 Sum_probs=17.7
Q ss_pred CCcchhhHHHHHhhcccccC
Q 003062 2 FDPSHTVCSFIQSRGRARMQ 21 (852)
Q Consensus 2 FD~p~t~~syIQSRGRAR~~ 21 (852)
||+|.+..+|+|+.|||-+.
T Consensus 366 ~~~p~s~~~y~Qr~GRagR~ 385 (579)
T 3sqw_A 366 IGVPSELANYIHRIGRTARS 385 (579)
T ss_dssp ESCCSSTTHHHHHHTTSSCT
T ss_pred cCCCCCHHHhhhhccccccC
Confidence 79999999999999997554
No 131
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=42.19 E-value=8.6 Score=44.81 Aligned_cols=20 Identities=30% Similarity=0.101 Sum_probs=17.6
Q ss_pred CCcchhhHHHHHhhcccccC
Q 003062 2 FDPSHTVCSFIQSRGRARMQ 21 (852)
Q Consensus 2 FD~p~t~~syIQSRGRAR~~ 21 (852)
||.|.+..+|+||+|||-+.
T Consensus 445 ~d~P~s~~~yiQR~GRaGR~ 464 (618)
T 2whx_A 445 GPIPVTPASAAQRRGRIGRN 464 (618)
T ss_dssp EEEECCHHHHHHHHTTSSCC
T ss_pred ccccCCHHHHHHhccccCCC
Confidence 57899999999999999655
No 132
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=40.92 E-value=33 Score=30.35 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=25.5
Q ss_pred eEEEEEEcCCCCCCccccccCcHHHHHHHHHHHHHHHHH
Q 003062 45 MGICTLYLPNNCPIQTVIAQGNIKTLKQTACLEACKKLH 83 (852)
Q Consensus 45 ~~~~~v~LP~~~p~~~~~~~~s~~~Ak~~aAf~Ac~~L~ 83 (852)
.|++.|.+.... .-..-.-+|++.|.+.||-+|+..|-
T Consensus 39 ~F~v~V~i~g~~-~~g~G~G~SKK~AEQ~AA~~AL~~l~ 76 (117)
T 1t4o_A 39 NSIVECRVGDGT-VLGTGVGRNIKIAGIRAAENALRDKK 76 (117)
T ss_dssp CEEEEEECTTCC-EEEEEEESSHHHHHHHHHHHHHHCHH
T ss_pred eEEEEEEECCEE-EEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 477888886520 01113347999999999988877654
No 133
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=40.34 E-value=8.6 Score=42.73 Aligned_cols=27 Identities=26% Similarity=0.213 Sum_probs=20.5
Q ss_pred CCcchhhHHHHHhhccc-cc--CCCcEEEE
Q 003062 2 FDPSHTVCSFIQSRGRA-RM--QNSDYLLM 28 (852)
Q Consensus 2 FD~p~t~~syIQSRGRA-R~--~~S~yi~m 28 (852)
||.|.+..+|+|++||| |. +.+.-+++
T Consensus 266 ~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l 295 (440)
T 1yks_A 266 GPLRISASSAAQRRGRIGRNPNRDGDSYYY 295 (440)
T ss_dssp EEEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred cccccCHHHHHHhccccCCCCCCCceEEEE
Confidence 68899999999999997 43 24554555
No 134
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=38.38 E-value=14 Score=40.97 Aligned_cols=19 Identities=32% Similarity=0.193 Sum_probs=16.6
Q ss_pred cchhhHHHHHhhcccccCC
Q 003062 4 PSHTVCSFIQSRGRARMQN 22 (852)
Q Consensus 4 ~p~t~~syIQSRGRAR~~~ 22 (852)
.|.+..+|+|++|||-+.+
T Consensus 280 ~p~s~~~y~Qr~GRaGR~g 298 (451)
T 2jlq_A 280 IPVTPASAAQRRGRIGRNP 298 (451)
T ss_dssp EECCHHHHHHHHTTSSCCT
T ss_pred ccCCHHHHHHhccccCCCC
Confidence 8999999999999996544
No 135
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=36.75 E-value=6.6 Score=47.12 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=20.5
Q ss_pred chhhHHHHHhhccc-ccCCCcEEEEEe
Q 003062 5 SHTVCSFIQSRGRA-RMQNSDYLLMLK 30 (852)
Q Consensus 5 p~t~~syIQSRGRA-R~~~S~yi~m~e 30 (852)
|.+..+|+||.||| |....+.+.|+.
T Consensus 415 p~S~~s~~QR~GRaGR~~~G~~~~l~~ 441 (773)
T 2xau_A 415 PISKASAQQRAGRAGRTRPGKCFRLYT 441 (773)
T ss_dssp ECCHHHHHHHHHGGGSSSSEEEEESSC
T ss_pred cCCHHHHHhhccccCCCCCCEEEEEec
Confidence 88999999999999 655566666653
No 136
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=34.74 E-value=14 Score=40.70 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=18.2
Q ss_pred CCcchhhHHHHHhhcccccC
Q 003062 2 FDPSHTVCSFIQSRGRARMQ 21 (852)
Q Consensus 2 FD~p~t~~syIQSRGRAR~~ 21 (852)
||+|.+..+|+||.|||-+.
T Consensus 375 ~d~p~~~~~y~qriGR~gR~ 394 (434)
T 2db3_A 375 YDMPSKIDDYVHRIGRTGRV 394 (434)
T ss_dssp SSCCSSHHHHHHHHTTSSCT
T ss_pred ECCCCCHHHHHHHhcccccC
Confidence 89999999999999998654
No 137
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=33.79 E-value=12 Score=42.11 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=20.9
Q ss_pred CCcchhhHHHHHhhccc-ccCCCc-EEEEEe
Q 003062 2 FDPSHTVCSFIQSRGRA-RMQNSD-YLLMLK 30 (852)
Q Consensus 2 FD~p~t~~syIQSRGRA-R~~~S~-yi~m~e 30 (852)
+|.|.++.+|+|++||| |....+ .+++++
T Consensus 423 ~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 423 AHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp SSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred eCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 68899999999999999 443333 444433
No 138
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=27.28 E-value=19 Score=43.11 Aligned_cols=17 Identities=24% Similarity=0.114 Sum_probs=8.8
Q ss_pred CCcchhhHHHHHhhccc
Q 003062 2 FDPSHTVCSFIQSRGRA 18 (852)
Q Consensus 2 FD~p~t~~syIQSRGRA 18 (852)
||+|.+.+.|+|+|||+
T Consensus 513 ~d~p~s~r~y~hr~GRT 529 (844)
T 1tf5_A 513 TERHESRRIDNQLRGRS 529 (844)
T ss_dssp SSCCSSHHHHHHHHTTS
T ss_pred ecCCCCHHHHHhhcCcc
Confidence 44555555555555554
No 139
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=26.56 E-value=23 Score=43.56 Aligned_cols=20 Identities=30% Similarity=0.250 Sum_probs=17.8
Q ss_pred CCCcchhhHHHHHhhccccc
Q 003062 1 MFDPSHTVCSFIQSRGRARM 20 (852)
Q Consensus 1 rFD~p~t~~syIQSRGRAR~ 20 (852)
.||+|.+..+|+|++||+-+
T Consensus 580 ~~d~p~~~~~~~Q~~GR~~R 599 (968)
T 3dmq_A 580 MFDLPFNPDLLEQRIGRLDR 599 (968)
T ss_dssp CSSCCSSHHHHHHHHHTTSC
T ss_pred EecCCCCHHHHHHHhhcccc
Confidence 38999999999999999944
No 140
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=25.76 E-value=14 Score=41.09 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCcc------hhhHHHHHhhcccccC--CCcEEEEE
Q 003062 2 FDPS------HTVCSFIQSRGRARMQ--NSDYLLML 29 (852)
Q Consensus 2 FD~p------~t~~syIQSRGRAR~~--~S~yi~m~ 29 (852)
||+| .++.+|+|+.|||-+. ...-++|+
T Consensus 408 ~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~ 443 (479)
T 3fmp_B 408 FDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMV 443 (479)
T ss_dssp ------------------------------------
T ss_pred ecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 7888 5789999999999543 34444553
No 141
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=22.33 E-value=30 Score=40.82 Aligned_cols=17 Identities=29% Similarity=0.139 Sum_probs=9.5
Q ss_pred CCcchhhHHHHHhhccc
Q 003062 2 FDPSHTVCSFIQSRGRA 18 (852)
Q Consensus 2 FD~p~t~~syIQSRGRA 18 (852)
||+|.+.+.|+|++||+
T Consensus 555 te~Pes~r~y~qriGRT 571 (822)
T 3jux_A 555 TERHESRRIDNQLRGRA 571 (822)
T ss_dssp SSCCSSHHHHHHHHTTS
T ss_pred cCCCCCHHHHHHhhCcc
Confidence 45555555555555553
No 142
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=22.09 E-value=3.8 Score=48.34 Aligned_cols=39 Identities=8% Similarity=-0.009 Sum_probs=28.6
Q ss_pred EcCcCCceE--EEEee-cCCCCCCCCCCCCCCCcchHHHHHHHHhCc
Q 003062 296 CTPHSGQIY--YITGV-LGHLNANSLFTRNDGGAITYKKHYEERYGI 339 (852)
Q Consensus 296 ~~~~~~~~Y--~v~~i-~~dl~p~S~f~~~~~~~~ty~~yy~~k~~~ 339 (852)
.+.|+|+.| +|++| +|+.+|.|+|.. +..+| ||+++|++
T Consensus 184 ~~~y~n~ty~~riddi~~~~~~P~~~f~~--g~~iS---Yyk~~~~~ 225 (706)
T 1yvu_A 184 RVKPIGIDFVGRVQDVFKAKEKGEEFFRL--CMERS---THKSSKKA 225 (706)
T ss_dssp EEEETTCCCCEEEEEEEESTTSCHHHHHH--HHHTC---SSHHHHHH
T ss_pred HhhcccceeccccCcccccCCCcceEecC--CCCcc---eEecccCc
Confidence 345667778 99999 999999999862 33345 77776644
No 143
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=21.47 E-value=28 Score=41.56 Aligned_cols=12 Identities=25% Similarity=0.011 Sum_probs=4.3
Q ss_pred chhhHHHHHhhc
Q 003062 5 SHTVCSFIQSRG 16 (852)
Q Consensus 5 p~t~~syIQSRG 16 (852)
|.+.+.|+|+||
T Consensus 554 pes~riy~qr~G 565 (853)
T 2fsf_A 554 HESRRIDNQLRG 565 (853)
T ss_dssp CSSHHHHHHHHT
T ss_pred CCCHHHHHhhcc
Confidence 333333333333
No 144
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=20.74 E-value=32 Score=42.50 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=22.2
Q ss_pred CCCc----chhhHHHHHhhcccccCC----CcEEEEE
Q 003062 1 MFDP----SHTVCSFIQSRGRARMQN----SDYLLML 29 (852)
Q Consensus 1 rFD~----p~t~~syIQSRGRAR~~~----S~yi~m~ 29 (852)
+||. |.+..+|+|+.|||-+.+ +.-++|+
T Consensus 460 kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~ 496 (1010)
T 2xgj_A 460 KWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMI 496 (1010)
T ss_dssp EECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEE
T ss_pred ccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEE
Confidence 3788 889999999999996654 4455553
No 145
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=20.72 E-value=34 Score=40.90 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=18.4
Q ss_pred CCcch-hhHHHHHhhccc-ccCCCcEEEE
Q 003062 2 FDPSH-TVCSFIQSRGRA-RMQNSDYLLM 28 (852)
Q Consensus 2 FD~p~-t~~syIQSRGRA-R~~~S~yi~m 28 (852)
+|.|. ++.+|+|++||| |....-++++
T Consensus 664 ~d~~r~~l~~l~Qr~GRaGR~g~~g~~il 692 (780)
T 1gm5_A 664 ENPERFGLAQLHQLRGRVGRGGQEAYCFL 692 (780)
T ss_dssp CSCSSSCTTHHHHHHHTSCCSSTTCEEEC
T ss_pred eCCCCCCHHHHHHHhcccCcCCCCCEEEE
Confidence 57775 688899999999 4333344444
No 146
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=20.02 E-value=45 Score=39.29 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=14.0
Q ss_pred cchhhHHHHHhhcccccCC
Q 003062 4 PSHTVCSFIQSRGRARMQN 22 (852)
Q Consensus 4 ~p~t~~syIQSRGRAR~~~ 22 (852)
.|.+..+|+|+.|||-+.+
T Consensus 376 ~~~s~~~~~Qr~GRaGR~g 394 (715)
T 2va8_A 376 DEIPIMEYKQMSGRAGRPG 394 (715)
T ss_dssp ---CHHHHHHHHTTBCCTT
T ss_pred CcCCHHHHHHHhhhcCCCC
Confidence 7999999999999996654
Done!