BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003068
(851 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune
Regulator Protein (Aire1): Insights Into Apeced
pdb|2KE1|A Chain A, Molecular Basis Of Non-Modified Histone H3 Tail
Recognition By The First Phd Finger Of Autoimmune
Regulator
Length = 66
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 498 AMGQRRTTGGSDDMCHVCGDGENLLLCNGCPLAFHAACLDPLL--IPESGWRCPNCRQG 554
AM Q+ ++D C VC DG L+ C+GCP AFH ACL P L IP WRC +C Q
Sbjct: 2 AMAQK-----NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 583 RSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFC 630
++ D A D +I CD C + FH+ CL L+EIP W C
Sbjct: 6 KNEDECAVCRDGGELICCDGCPRAFHLACLSP----PLREIPSGTWRC 49
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 56
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 508 SDDMCHVCGDGENLLLCNGCPLAFHAACLDPLL--IPESGWRCPNCRQG 554
++D C VC DG L+ C+GCP AFH ACL P L IP WRC +C Q
Sbjct: 4 NEDECAVCRDGGELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 52
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 583 RSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFC 630
++ D A D +I CD C + FH+ CL L+EIP W C
Sbjct: 3 KNEDECAVCRDGGELICCDGCPRAFHLACLSP----PLREIPSGTWRC 46
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 510 DMCHVCGDGENLLLCNGCPLAFHAACLDPLL--IPESGWRCPNCRQ 553
D C VC G ++LC+ CP A+H CLDP + PE W CP+C +
Sbjct: 12 DYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 586 DFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFC 630
D+ +I CD C + +H+ CL D+++ P+ KW C
Sbjct: 12 DYCEVCQQGGEIILCDTCPRAYHMVCLDP----DMEKAPEGKWSC 52
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 49.7 bits (117), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 512 CHVCG---DGENLLLCNGCPLAFHAACLDPLL--IP-ESGWRCPNCR 552
CH+CG D + L+C+ C +AFH CLDP L +P E W CP CR
Sbjct: 177 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 223
Score = 32.7 bits (73), Expect = 0.93, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 579 CVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIP-KDKWFC 630
C +C H D+ ++ CD+C+ FH+ CL L +P +D+W+C
Sbjct: 172 CRVCACHLCGGRQDPDKQLM-CDECDMAFHIYCLDP----PLSSVPSEDEWYC 219
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 512 CHVCG---DGENLLLCNGCPLAFHAACLDPLL--IP-ESGWRCPNCR 552
CH+CG D + L+C+ C +AFH CLDP L +P E W CP CR
Sbjct: 193 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 239
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 579 CVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIP-KDKWFC 630
C +C H D + CD+C+ FH+ CL L +P +D+W+C
Sbjct: 188 CRVCACH-LCGGRQDPDKQLMCDECDMAFHIYCLDPP----LSSVPSEDEWYC 235
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From
MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3
Homolog
Length = 111
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query: 484 TSNGMTLHDIAISLAMGQRRTTGGSDDMCHVC------GDGENLLLCNGCPLAFHAACLD 537
T+ G H + + +A+ + G C VC G+ +L+C+ C +H CL
Sbjct: 26 TTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQ 85
Query: 538 PLL--IPESGWRCPNCR 552
P++ +P +GW+C NCR
Sbjct: 86 PVMKSVPTNGWKCKNCR 102
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 40/132 (30%)
Query: 504 TTGGSDDMCHVC---GDGENLLLCNGCPLAFHAACLDPLLIP--ESGWRCPNCRQGHSSS 558
++G S C VC GD + C C +H CLD + P +GW+CP C+
Sbjct: 2 SSGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK------ 55
Query: 559 MSRSVDLKGGLEAPGAEVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLC 618
+C++ S +D ++ CD C+K +H CL+
Sbjct: 56 ----------------------VCQNCKQSG---EDSKMLVCDTCDKGYHTFCLQPV--- 87
Query: 619 DLKEIPKDKWFC 630
+K +P + W C
Sbjct: 88 -MKSVPTNGWKC 98
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C-
Terminal Loop Replaced By Corresponding Loop From Wstf
Length = 61
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 507 GSD---DMCHVCGDGENLLLCNGCPLAFHAACLDPLL--IPESGWRCPNC 551
GSD + C VC DG LL C+ CP ++H CL P L +P+ W+CP C
Sbjct: 4 GSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLRPALYEVPDGEWQCPRC 53
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 586 DFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFC 630
+F D ++ CD C +H+ CLR L E+P +W C
Sbjct: 10 EFCRVCKDGGELLCCDTCPSSYHIHCLRPA----LYEVPDGEWQC 50
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 505 TGGSDDMCHVCGDGENLLLCNGCPLAFHAACLDPLL--IPESGWRCPNCR 552
+ G +D C VC LL+C+ C +H CLDP L IP+ W CP C+
Sbjct: 5 SSGHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54
Score = 32.7 bits (73), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 586 DFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFC 630
DF + ++ CD C + +H+ CL LK IPK W C
Sbjct: 10 DFCSVCRKSGQLLMCDTCSRVYHLDCLDPP----LKTIPKGMWIC 50
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 508 SDDMCHVCGDGENLLLCNGCPLAFHAACLDPLLI--PESGWRCPNCR 552
++D C VC +G +LL C CP FH C P L+ P W C CR
Sbjct: 6 NEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCR 52
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 507 GSD---DMCHVCGDGENLLLCNGCPLAFHAACLDPLL--IPESGWRCPNC 551
GSD + C VC DG LL C+ CP ++H CL+P L IP W CP C
Sbjct: 4 GSDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 53
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 586 DFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFC 630
+F D ++ CD C +H+ CL L EIP +W C
Sbjct: 10 EFCRVCKDGGELLCCDTCPSSYHIHCLNP----PLPEIPNGEWLC 50
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 509 DDMCHVCGDGENLLLCNGCPLAFHAACLDPLL--IPESGWRCPNCR 552
+D C VC LL+C+ C +H CLDP L IP+ W CP C+
Sbjct: 5 EDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 50
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 586 DFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFC 630
DF + ++ CD C + +H+ CL LK IPK W C
Sbjct: 6 DFCSVCRKSGQLLMCDTCSRVYHLDCLDPP----LKTIPKGMWIC 46
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 512 CHVCG---DGENLLLCNGCPLAFHAACLDPLL--IP-ESGWRCPNCR 552
CH+CG D + L+C+ C +AFH CLDP L +P E W CP CR
Sbjct: 8 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 54
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
Length = 72
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 512 CHVCG---DGENLLLCNGCPLAFHAACLDPLL--IP-ESGWRCPNCR 552
CH+CG D + L+C+ C +AFH CLDP L +P E W CP CR
Sbjct: 23 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 69
>pdb|1F62|A Chain A, Wstf-Phd
Length = 51
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 512 CHVC---GDGENLLLCNGCPLAFHAACLDPLL--IPESGWRCPNCR 552
C VC G+ + L+LC+ C AFH CL P L +P+ W+CP C+
Sbjct: 3 CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQ 48
Score = 37.0 bits (84), Expect = 0.047, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 579 CVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFC 630
C +CR +D +I CD+C K FH+ CLR L E+P +W C
Sbjct: 3 CKVCRKKG------EDDKLILCDECNKAFHLFCLRPA----LYEVPDGEWQC 44
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
Length = 70
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 512 CHVCG---DGENLLLCNGCPLAFHAACLDPLL--IP-ESGWRCPNCR 552
CH+CG D + L+C+ C +AFH CLDP L +P E W CP CR
Sbjct: 21 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 67
>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3
Peptide
pdb|2LGK|A Chain A, Nmr Structure Of Uhrf1 Phd Domains In A Complex With
Histone H3 Peptide
pdb|2LGL|A Chain A, Nmr Structure Of The Uhrf1 Phd Domain
Length = 69
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 512 CHVCG---DGENLLLCNGCPLAFHAACLDPLL--IP-ESGWRCPNCR 552
CH+CG D + L+C+ C +AFH CLDP L +P E W CP CR
Sbjct: 21 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 67
>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
pdb|3T6R|B Chain B, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
Length = 72
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Query: 512 CHVCG---DGENLLLCNGCPLAFHAACLDPLL--IP-ESGWRCPNCR 552
CH+CG D + L+C+ C +AFH CLDP L +P E W CP CR
Sbjct: 26 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 72
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1
Length = 77
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 6/48 (12%)
Query: 512 CHVCG---DGENLLLCNGCPLAFHAACLDPLL--IP-ESGWRCPNCRQ 553
CH+CG D + L+C+ C +AFH CLDP L +P E W CP CR
Sbjct: 29 CHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 579 CVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIP-KDKWFC 630
C +C H D + CD+C+ FH+ CL L +P +D+W+C
Sbjct: 24 CRVCACH-LCGGRQDPDKQLMCDECDMAFHIYCLDPP----LSSVPSEDEWYC 71
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 509 DDMCHVCGDGEN-----LLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQGHS 556
D +C +C DGE+ +L C+ C LA H C IPE W C +C Q +
Sbjct: 16 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 68
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 508 SDDMCHVCGDGENLLLCNGCPLAFHAACLDPLL--IPESGWRCPNCRQGHSSSMSRSVD 564
++D C VC +G LL C CP FH +C P L P W C CR + D
Sbjct: 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCD 61
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 509 DDMCHVCGDGEN-----LLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQGHS 556
D +C +C DGE+ +L C+ C LA H C IPE W C +C Q +
Sbjct: 25 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 511 MCHVCGDGE---NLLLCNGCPLAFHAACLDPLL--IPESGWRCPNC 551
+C VC G+ LL C+GC +H CL P L IP WRCP C
Sbjct: 18 ICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKC 63
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 10/52 (19%)
Query: 579 CVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFC 630
C +C D +D +++CD C+ +H+ CL L L EIP+ W C
Sbjct: 19 CQVCSRGD------EDDKLLFCDGCDDNYHIFCL----LPPLPEIPRGIWRC 60
>pdb|4GND|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GND|C Chain C, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
pdb|4GNE|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-7
pdb|4GNF|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-15
pdb|4GNG|A Chain A, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
pdb|4GNG|D Chain D, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
Length = 107
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 509 DDMCHVCGDGENLLLCN--GCPLAFHAACLDPLLIPESGWRCP--NCRQGHSSSMS 560
+D C CGDG L++C+ CP A+H CL+ P W CP C + S+++S
Sbjct: 15 EDYCFQCGDGGELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCDECSSAAVS 70
>pdb|2LRI|C Chain C, Nmr Structure Of The Second Phd Finger Of Aire (aire-phd2)
Length = 66
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 500 GQRRTTGGSDDMCHVCGDGENLLLCNGCPLAFHAACLDPLLI--PESGWRCPNC 551
GQ+ G+ C VCGDG ++L C C AFH C P P +G RC +C
Sbjct: 5 GQQNLAPGA--RCGVCGDGTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSC 56
>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3 Bound To A Histone Peptide
Containing Acetylation At Lysine 14
pdb|2KWK|A Chain A, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3b Bound To A H3 Peptide Wild
Type
pdb|2KWN|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing Acetylation At Lysine 16
pdb|2KWO|A Chain A, Solution Structure Of The Double Phd (Plant Homeodomain)
Fingers Of Human Transcriptional Protein Dpf3b Bound To
A Histone H4 Peptide Containing N-Terminal Acetylation
At Serine 1
Length = 114
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 542 PESGWRCPNC-RQGHSSSMSRSVDLKGGLEAPGAEVGGCVICRSHDFSAATFDDRTVIYC 600
PE C +C R GH + + ++++ EA C+ C+S + +D +++C
Sbjct: 20 PEELVSCADCGRSGHPTCLQFTLNMT---EAVKTYKWQCIECKSCILCGTSENDDQLLFC 76
Query: 601 DQCEKEFHVGCLRKNGLCDLKEIPKDKWFC 630
D C++ +H+ CL + E P+ W C
Sbjct: 77 DDCDRGYHMYCLNP----PVAEPPEGSWSC 102
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 512 CHVCGDGEN---LLLCNGCPLAFHAACLDPLLI--PESGWRCPNCRQ 553
C +CG EN LL C+ C +H CL+P + PE W C C +
Sbjct: 61 CILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107
>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd
Finger-Bromodomain
Length = 189
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 508 SDDMCHVCGDGENLLLCNGCPLAFHAACLDPLL--IPESGWRCPNC 551
S +C VC +L++CN C FH C P L +P W C C
Sbjct: 1 SATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 46
>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger
Protein 107
Length = 77
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 6/47 (12%)
Query: 512 CHVCG---DGENLLLCNGCPLAFHAACLDPLL--IPESG-WRCPNCR 552
C VCG + LLC+ C +A+H CL+P L +PE W CP+C+
Sbjct: 29 CRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 75
>pdb|3V43|A Chain A, Crystal Structure Of Moz
Length = 112
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 517 DGENLLLCNGCPLAFHAACLDPLL--IPESGWRCPNCR 552
+ +N+L C+ C FH C DP L +P+ W C CR
Sbjct: 73 NADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICR 110
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 542 PESGWRCPNC-RQGHSSSMSRSVDLKGGLEAPGAEVGGCVICRSHDFSAATFDDRTVIYC 600
PE C +C GH S + S +L ++A + C C S D+ +++C
Sbjct: 23 PEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADN--MLFC 80
Query: 601 DQCEKEFHVGCLRKNGLCD--LKEIPKDKWFC 630
D C++ FH+ C CD L +PK W C
Sbjct: 81 DSCDRGFHMEC------CDPPLTRMPKGMWIC 106
>pdb|2LN0|A Chain A, Structure Of Moz
Length = 110
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 517 DGENLLLCNGCPLAFHAACLDPLL--IPESGWRCPNCR 552
+ +N+L C+ C FH C DP L +P+ W C CR
Sbjct: 71 NADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICR 108
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 542 PESGWRCPNC-RQGHSSSMSRSVDLKGGLEAPGAEVGGCVICRSHDFSAATFDDRTVIYC 600
PE C +C GH S + S +L ++A + C C S D+ +++C
Sbjct: 21 PEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTCSSCRDQGKNADN--MLFC 78
Query: 601 DQCEKEFHVGCLRKNGLCD--LKEIPKDKWFC 630
D C++ FH+ C CD L +PK W C
Sbjct: 79 DSCDRGFHMEC------CDPPLTRMPKGMWIC 104
>pdb|1FP0|A Chain A, Solution Structure Of The Phd Domain From The Kap-1
Corepressor
Length = 88
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 504 TTGGSDDMCHVCGDGENLLLCNGCPLAFHAACLDPLL--IPESGWRCPNCR 552
T S +C VC +L++CN C FH C P L +P W C C
Sbjct: 20 TLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCH 70
>pdb|2JMI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Yeast
Yng1 Protein In Free State
pdb|2JMJ|A Chain A, Nmr Solution Structure Of The Phd Domain From The Yeast
Yng1 Protein In Complex With H3(1-9)k4me3 Peptide
Length = 90
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 607 FHVGCLRKNGLCDLKEIPKDKWFCCDDCNRI 637
FH GC+ LK+ PK KW+C DC I
Sbjct: 52 FHYGCV------GLKQAPKGKWYCSKDCKEI 76
>pdb|2JM1|A Chain A, Structures And Chemical Shift Assignments For The Add
Domain Of The Atrx Protein
Length = 141
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 503 RTTGGSDDMCHVCGDGENLLLCNGCPLAFHAACL 536
R + G D+ C C +G NL+ C+ C AF C+
Sbjct: 56 RDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCI 89
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 2 GESAVCLEVPADGEMDVECSSRTESKQDRELLTDNVESDSFPNGKHAKEEALNDDIKSEV 61
G+ E+P GE V+ + L D + + P G +AK ++DDI S+V
Sbjct: 950 GDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLVAGQIPTGWNAKTYGISDDIISQV 1009
Query: 62 SNPV 65
+P+
Sbjct: 1010 -DPI 1012
>pdb|2LD1|A Chain A, Structures And Chemical Shift Assignments For The Add
Domain Of The Atrx Protein
pdb|2LBM|A Chain A, Solution Structure Of The Add Domain Of Atrx Complexed
With Histone Tail H3 1-15 K9me3
Length = 142
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 503 RTTGGSDDMCHVCGDGENLLLCNGCPLAFHAACL 536
R + G D+ C C +G NL+ C+ C AF C+
Sbjct: 57 RDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCI 90
>pdb|3QL9|A Chain A, Monoclinic Complex Structure Of Atrx Add Bound To Histone
H3k9me3 Peptide
pdb|3QLA|A Chain A, Hexagonal Complex Structure Of Atrx Add Bound To H3k9me3
Peptide
pdb|3QLA|D Chain D, Hexagonal Complex Structure Of Atrx Add Bound To H3k9me3
Peptide
pdb|3QLC|A Chain A, Complex Structure Of Atrx Add Domain Bound To Unmodified
H3 1-15 Peptide
pdb|3QLC|B Chain B, Complex Structure Of Atrx Add Domain Bound To Unmodified
H3 1-15 Peptide
pdb|3QLN|A Chain A, Crystal Structure Of Atrx Add Domain In Free State
pdb|3QLN|B Chain B, Crystal Structure Of Atrx Add Domain In Free State
Length = 129
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 503 RTTGGSDDMCHVCGDGENLLLCNGCPLAFHAACL 536
R + G D+ C C +G NL+ C+ C AF C+
Sbjct: 51 RDSDGMDEQCRWCAEGGNLICCDFCHNAFCKKCI 84
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 2 GESAVCLEVPADGEMDVECSSRTESKQDRELLTDNVESDSFPNGKHAKEEALNDDIKSEV 61
G+ E+P GE V+ + L D + + P G +AK ++DDI S+V
Sbjct: 1149 GDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLVAGQIPTGWNAKTYGISDDIISQV 1208
Query: 62 SNPV 65
+P+
Sbjct: 1209 -DPI 1211
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 2 GESAVCLEVPADGEMDVECSSRTESKQDRELLTDNVESDSFPNGKHAKEEALNDDIKSEV 61
G+ E+P GE V+ + L D + + P G +AK ++DDI S+V
Sbjct: 1149 GDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRLVAGQIPTGWNAKTYGISDDIISQV 1208
Query: 62 SNPV 65
+P+
Sbjct: 1209 -DPI 1211
>pdb|3C6W|A Chain A, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
pdb|3C6W|C Chain C, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
Length = 59
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 511 MCHVCGDGENLLLCNG--CPL-AFHAACLDPLLIPESGWRCPNCRQ 553
+CH GE ++ C+ CP+ FH AC+D P+ W CP C Q
Sbjct: 13 LCHQVSYGE-MIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQ 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,826,325
Number of Sequences: 62578
Number of extensions: 1102024
Number of successful extensions: 2782
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2691
Number of HSP's gapped (non-prelim): 89
length of query: 851
length of database: 14,973,337
effective HSP length: 107
effective length of query: 744
effective length of database: 8,277,491
effective search space: 6158453304
effective search space used: 6158453304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)