Query 003068
Match_columns 851
No_of_seqs 427 out of 1930
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 16:23:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003068.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003068hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10314 putative acyltransfer 99.2 5.5E-11 1.2E-15 117.7 10.1 82 740-822 51-135 (153)
2 COG1246 ArgA N-acetylglutamate 99.1 5.5E-11 1.2E-15 117.1 6.7 91 733-827 38-129 (153)
3 PF13508 Acetyltransf_7: Acety 99.1 5.7E-10 1.2E-14 97.3 11.0 77 737-818 3-79 (79)
4 KOG0956 PHD finger protein AF1 99.1 5.7E-11 1.2E-15 136.4 4.3 132 510-646 6-189 (900)
5 PF00583 Acetyltransf_1: Acety 99.1 9.9E-10 2.1E-14 95.2 10.2 74 743-817 2-83 (83)
6 KOG1244 Predicted transcriptio 99.0 7.9E-11 1.7E-15 123.4 1.9 93 509-637 224-331 (336)
7 PF15446 zf-PHD-like: PHD/FYVE 99.0 4.7E-10 1E-14 111.1 6.3 95 511-616 1-143 (175)
8 PF13673 Acetyltransf_10: Acet 99.0 3E-09 6.6E-14 97.9 10.7 74 737-816 44-117 (117)
9 PTZ00330 acetyltransferase; Pr 98.9 8E-09 1.7E-13 99.0 10.7 83 738-821 53-141 (147)
10 PRK10146 aminoalkylphosphonic 98.9 5.4E-09 1.2E-13 99.9 9.1 81 740-821 50-138 (144)
11 KOG1512 PHD Zn-finger protein 98.9 7.3E-10 1.6E-14 116.8 1.8 93 507-636 256-362 (381)
12 cd02169 Citrate_lyase_ligase C 98.8 8.9E-09 1.9E-13 112.7 9.7 73 742-820 11-83 (297)
13 PLN02706 glucosamine 6-phospha 98.8 1.8E-08 4E-13 97.5 10.7 82 738-820 54-143 (150)
14 PRK07757 acetyltransferase; Pr 98.8 1.6E-08 3.5E-13 98.2 9.5 82 741-825 45-126 (152)
15 PRK07922 N-acetylglutamate syn 98.8 2.1E-08 4.5E-13 100.8 9.9 79 740-821 48-127 (169)
16 KOG0383 Predicted helicase [Ge 98.8 3.3E-09 7E-14 125.9 4.2 147 526-696 1-155 (696)
17 PRK03624 putative acetyltransf 98.8 2.1E-08 4.5E-13 94.1 8.8 83 738-822 46-131 (140)
18 PLN02825 amino-acid N-acetyltr 98.8 2.2E-08 4.8E-13 116.7 10.8 88 740-829 410-498 (515)
19 PF13527 Acetyltransf_9: Acety 98.8 5.7E-08 1.2E-12 91.2 11.0 79 738-819 42-127 (127)
20 TIGR00124 cit_ly_ligase [citra 98.7 2.3E-08 5E-13 111.0 8.1 82 736-823 30-111 (332)
21 COG2153 ElaA Predicted acyltra 98.7 3.1E-08 6.7E-13 96.6 7.7 85 740-825 52-140 (155)
22 TIGR01890 N-Ac-Glu-synth amino 98.7 5.5E-08 1.2E-12 111.5 10.5 83 741-825 326-409 (429)
23 TIGR02382 wecD_rffC TDP-D-fuco 98.7 9.9E-08 2.2E-12 97.2 10.0 80 741-821 103-185 (191)
24 COG5141 PHD zinc finger-contai 98.7 6.2E-09 1.3E-13 116.4 1.1 106 507-621 191-342 (669)
25 PRK10975 TDP-fucosamine acetyl 98.7 1.1E-07 2.3E-12 97.0 10.0 84 737-821 102-188 (194)
26 TIGR01575 rimI ribosomal-prote 98.6 1.5E-07 3.3E-12 87.5 10.1 81 740-822 34-117 (131)
27 KOG4323 Polycomb-like PHD Zn-f 98.6 2.1E-08 4.6E-13 113.7 4.4 143 507-655 81-242 (464)
28 PRK09491 rimI ribosomal-protei 98.6 2.5E-07 5.4E-12 89.4 11.1 85 736-822 39-126 (146)
29 PRK05279 N-acetylglutamate syn 98.6 1.4E-07 3.1E-12 108.4 10.6 84 740-825 337-421 (441)
30 PRK12308 bifunctional arginino 98.6 1.3E-07 2.7E-12 113.3 10.0 83 740-825 506-588 (614)
31 TIGR03827 GNAT_ablB putative b 98.6 1.8E-07 3.9E-12 100.5 9.8 86 736-822 157-246 (266)
32 KOG0955 PHD finger protein BR1 98.6 2.5E-08 5.5E-13 122.5 3.6 107 505-619 215-367 (1051)
33 PRK13688 hypothetical protein; 98.6 2.4E-07 5.1E-12 92.6 9.2 76 741-822 49-134 (156)
34 PRK10140 putative acetyltransf 98.5 5.1E-07 1.1E-11 87.7 10.3 84 737-822 51-142 (162)
35 PRK09831 putative acyltransfer 98.5 3.1E-07 6.7E-12 89.3 8.2 73 740-823 56-128 (147)
36 KOG3139 N-acetyltransferase [G 98.5 6.2E-07 1.3E-11 89.1 9.9 84 739-823 58-148 (165)
37 PHA00673 acetyltransferase dom 98.4 1.3E-06 2.9E-11 87.1 10.7 85 736-821 54-146 (154)
38 KOG4443 Putative transcription 98.4 1.1E-07 2.4E-12 110.3 2.1 88 508-630 17-112 (694)
39 TIGR02406 ectoine_EctA L-2,4-d 98.4 1.3E-06 2.8E-11 86.6 9.1 83 738-821 40-128 (157)
40 KOG3396 Glucosamine-phosphate 98.4 1.2E-06 2.5E-11 84.8 8.1 84 737-821 53-144 (150)
41 PF13420 Acetyltransf_4: Acety 98.3 3.1E-06 6.7E-11 82.0 10.8 83 737-821 50-139 (155)
42 KOG4299 PHD Zn-finger protein 98.3 4.5E-07 9.7E-12 105.2 5.3 45 509-553 253-304 (613)
43 KOG4299 PHD Zn-finger protein 98.3 4.2E-07 9.1E-12 105.4 4.3 50 578-636 255-304 (613)
44 COG0456 RimI Acetyltransferase 98.3 2.9E-06 6.2E-11 83.8 9.7 76 747-823 72-156 (177)
45 TIGR03448 mycothiol_MshD mycot 98.3 2.4E-06 5.2E-11 92.0 9.8 76 745-821 208-288 (292)
46 TIGR03448 mycothiol_MshD mycot 98.3 2.9E-06 6.3E-11 91.4 10.1 81 738-821 47-128 (292)
47 PF08445 FR47: FR47-like prote 98.3 3.1E-06 6.7E-11 76.3 8.6 77 743-821 4-82 (86)
48 PHA01807 hypothetical protein 98.3 2.1E-06 4.6E-11 85.6 8.3 83 737-822 53-142 (153)
49 PRK10514 putative acetyltransf 98.3 2.7E-06 5.7E-11 81.7 8.6 86 743-836 56-141 (145)
50 TIGR03103 trio_acet_GNAT GNAT- 98.3 3.5E-06 7.7E-11 99.6 10.7 85 736-821 122-217 (547)
51 PF13523 Acetyltransf_8: Acety 98.2 9.5E-06 2.1E-10 78.9 10.8 88 735-823 46-143 (152)
52 KOG0954 PHD finger protein [Ge 98.2 3.7E-07 8.1E-12 106.6 0.7 123 507-638 269-440 (893)
53 KOG0383 Predicted helicase [Ge 98.2 4.9E-07 1.1E-11 107.8 1.1 49 506-554 44-94 (696)
54 PRK10562 putative acetyltransf 98.2 6.5E-06 1.4E-10 79.7 8.5 77 739-822 50-126 (145)
55 PRK01346 hypothetical protein; 98.2 6.7E-06 1.5E-10 93.4 10.0 81 739-822 49-137 (411)
56 PRK15130 spermidine N1-acetylt 98.1 1.3E-05 2.9E-10 80.5 10.3 83 738-822 58-146 (186)
57 cd04301 NAT_SF N-Acyltransfera 98.1 1.2E-05 2.7E-10 63.6 8.0 61 740-800 2-64 (65)
58 TIGR01211 ELP3 histone acetylt 98.1 9E-06 2E-10 95.4 9.7 76 745-821 422-516 (522)
59 TIGR03585 PseH pseudaminic aci 98.1 2.7E-05 5.9E-10 75.4 10.6 81 740-823 54-140 (156)
60 TIGR01686 FkbH FkbH-like domai 98.0 1.9E-05 4E-10 87.4 9.8 82 736-819 230-319 (320)
61 COG3393 Predicted acetyltransf 98.0 2E-05 4.3E-10 84.2 8.4 84 737-821 177-262 (268)
62 KOG1244 Predicted transcriptio 98.0 1.9E-06 4.2E-11 91.0 0.6 46 507-552 279-329 (336)
63 KOG0825 PHD Zn-finger protein 97.9 5.3E-06 1.1E-10 97.5 2.0 53 574-637 213-266 (1134)
64 PF00628 PHD: PHD-finger; Int 97.8 4.8E-06 1E-10 67.4 0.8 49 578-635 1-49 (51)
65 PRK10809 ribosomal-protein-S5- 97.8 7.6E-05 1.6E-09 75.7 9.7 84 737-822 77-167 (194)
66 COG3153 Predicted acetyltransf 97.8 6.3E-05 1.4E-09 76.4 8.9 82 739-824 48-134 (171)
67 PRK10151 ribosomal-protein-L7/ 97.8 0.00015 3.1E-09 72.6 10.8 81 740-822 70-156 (179)
68 smart00249 PHD PHD zinc finger 97.8 2.6E-05 5.7E-10 60.7 3.9 45 578-631 1-45 (47)
69 PF13302 Acetyltransf_3: Acety 97.8 0.00024 5.3E-09 67.2 11.2 80 736-817 55-142 (142)
70 KOG1473 Nucleosome remodeling 97.8 8.6E-06 1.9E-10 99.0 1.3 123 507-641 342-483 (1414)
71 KOG1512 PHD Zn-finger protein 97.7 6.8E-06 1.5E-10 87.4 0.4 82 447-551 275-360 (381)
72 KOG3397 Acetyltransferases [Ge 97.7 5.5E-05 1.2E-09 76.0 6.5 79 744-824 64-144 (225)
73 smart00258 SAND SAND domain. 97.7 1.5E-05 3.2E-10 69.9 2.0 62 433-495 5-68 (73)
74 PF13718 GNAT_acetyltr_2: GNAT 97.7 0.00021 4.6E-09 74.1 10.4 86 735-821 25-176 (196)
75 COG1247 Sortase and related ac 97.6 0.00032 6.9E-09 71.2 10.3 109 732-846 47-164 (169)
76 smart00249 PHD PHD zinc finger 97.6 4.5E-05 9.8E-10 59.3 3.1 41 511-551 1-47 (47)
77 PF00628 PHD: PHD-finger; Int 97.6 2.2E-05 4.7E-10 63.6 1.0 42 511-552 1-49 (51)
78 KOG4443 Putative transcription 97.4 4.9E-05 1.1E-09 88.9 1.8 102 510-614 69-180 (694)
79 KOG3216 Diamine acetyltransfer 97.4 0.00097 2.1E-08 66.2 10.2 88 733-821 50-146 (163)
80 KOG0825 PHD Zn-finger protein 97.3 0.00011 2.4E-09 86.8 3.1 108 442-553 137-265 (1134)
81 KOG1973 Chromatin remodeling p 97.2 0.00015 3.2E-09 79.1 1.6 42 511-553 223-267 (274)
82 PF01342 SAND: SAND domain; I 97.1 2.6E-05 5.7E-10 70.1 -4.2 63 432-495 12-77 (82)
83 COG5034 TNG2 Chromatin remodel 97.0 0.00033 7.1E-09 74.2 2.0 44 578-636 223-269 (271)
84 COG3053 CitC Citrate lyase syn 96.9 0.0027 5.8E-08 68.9 8.5 78 738-821 37-115 (352)
85 KOG1973 Chromatin remodeling p 96.9 0.00036 7.8E-09 76.0 1.5 36 594-636 229-267 (274)
86 PF12746 GNAT_acetyltran: GNAT 96.9 0.0063 1.4E-07 66.2 10.5 78 742-821 170-247 (265)
87 PF12568 DUF3749: Acetyltransf 96.7 0.011 2.4E-07 57.4 9.9 80 737-821 40-125 (128)
88 COG2388 Predicted acetyltransf 96.7 0.0059 1.3E-07 57.0 7.6 73 735-811 15-87 (99)
89 PF14542 Acetyltransf_CG: GCN5 96.6 0.0078 1.7E-07 53.6 7.7 69 740-811 2-70 (78)
90 COG1670 RimL Acetyltransferase 96.6 0.013 2.7E-07 57.4 10.0 89 735-825 64-162 (187)
91 KOG3138 Predicted N-acetyltran 96.5 0.0022 4.8E-08 66.1 4.1 61 761-822 89-153 (187)
92 COG0454 WecD Histone acetyltra 96.5 0.0035 7.5E-08 53.0 4.3 44 767-816 87-130 (156)
93 KOG4144 Arylalkylamine N-acety 96.4 0.0027 5.7E-08 63.2 3.5 62 759-821 99-161 (190)
94 PF08444 Gly_acyl_tr_C: Aralky 96.4 0.0058 1.2E-07 55.9 5.3 74 742-820 4-79 (89)
95 COG1444 Predicted P-loop ATPas 96.4 0.0037 8E-08 76.0 5.3 59 762-821 532-591 (758)
96 KOG2488 Acetyltransferase (GNA 96.4 0.0086 1.9E-07 61.6 7.1 83 738-821 94-182 (202)
97 COG5034 TNG2 Chromatin remodel 96.3 0.0017 3.8E-08 68.9 1.7 45 507-552 219-268 (271)
98 KOG0957 PHD finger protein [Ge 96.2 0.0017 3.8E-08 73.9 1.1 47 577-634 545-595 (707)
99 KOG0957 PHD finger protein [Ge 96.2 0.0026 5.6E-08 72.6 2.2 108 506-617 116-277 (707)
100 COG4552 Eis Predicted acetyltr 96.1 0.0071 1.5E-07 67.3 5.3 87 730-821 34-127 (389)
101 PF13831 PHD_2: PHD-finger; PD 96.1 0.0011 2.4E-08 50.7 -0.7 34 519-552 2-36 (36)
102 KOG3235 Subunit of the major N 95.8 0.027 5.8E-07 56.5 7.4 82 741-822 45-136 (193)
103 cd04718 BAH_plant_2 BAH, or Br 95.3 0.0087 1.9E-07 59.5 1.7 26 606-636 1-26 (148)
104 cd04718 BAH_plant_2 BAH, or Br 95.2 0.011 2.3E-07 58.9 2.0 24 530-553 1-26 (148)
105 KOG0955 PHD finger protein BR1 95.2 0.013 2.9E-07 73.5 3.3 56 575-641 218-273 (1051)
106 KOG3234 Acetyltransferase, (GN 95.1 0.06 1.3E-06 54.1 7.0 58 761-819 69-129 (173)
107 KOG0956 PHD finger protein AF1 95.0 0.01 2.2E-07 70.1 1.6 51 576-637 5-57 (900)
108 TIGR03694 exosort_acyl putativ 94.9 0.22 4.7E-06 53.5 11.3 95 726-821 45-200 (241)
109 PF13480 Acetyltransf_6: Acety 94.7 0.25 5.4E-06 46.5 10.0 67 736-803 70-136 (142)
110 KOG1245 Chromatin remodeling c 94.5 0.0098 2.1E-07 77.1 -0.2 52 577-639 1109-1160(1404)
111 COG1243 ELP3 Histone acetyltra 94.4 0.031 6.7E-07 64.3 3.3 51 770-821 459-509 (515)
112 KOG4323 Polycomb-like PHD Zn-f 94.2 0.017 3.7E-07 66.7 0.9 43 511-553 170-223 (464)
113 PF00765 Autoind_synth: Autoin 93.5 0.42 9.2E-06 49.3 9.5 92 726-819 34-153 (182)
114 PF06852 DUF1248: Protein of u 93.2 0.46 1E-05 49.1 9.2 82 738-821 48-137 (181)
115 smart00258 SAND SAND domain. 93.2 0.076 1.6E-06 47.0 2.9 50 245-297 19-69 (73)
116 KOG0954 PHD finger protein [Ge 92.6 0.056 1.2E-06 64.7 1.8 52 575-637 270-321 (893)
117 COG5141 PHD zinc finger-contai 92.5 0.05 1.1E-06 62.5 1.1 47 577-634 194-240 (669)
118 KOG1245 Chromatin remodeling c 92.4 0.033 7.1E-07 72.5 -0.6 48 506-553 1105-1157(1404)
119 PRK13834 putative autoinducer 91.7 0.94 2E-05 47.7 9.4 95 726-821 42-167 (207)
120 COG3981 Predicted acetyltransf 91.7 0.29 6.3E-06 50.0 5.3 66 737-804 70-140 (174)
121 PF01342 SAND: SAND domain; I 90.3 0.081 1.8E-06 47.8 -0.1 55 240-297 18-78 (82)
122 PF13832 zf-HC5HC2H_2: PHD-zin 89.0 0.37 8.1E-06 45.1 3.3 33 577-617 56-90 (110)
123 PF13831 PHD_2: PHD-finger; PD 88.8 0.079 1.7E-06 40.6 -1.1 33 595-634 2-35 (36)
124 COG3818 Predicted acetyltransf 88.5 1.1 2.5E-05 43.9 6.2 62 765-826 88-153 (167)
125 cd04264 DUF619-NAGS DUF619 dom 88.0 1 2.3E-05 42.2 5.5 48 743-790 14-63 (99)
126 KOG2752 Uncharacterized conser 83.1 1.1 2.4E-05 49.5 3.6 101 511-615 57-167 (345)
127 KOG4135 Predicted phosphogluco 82.5 2.5 5.4E-05 42.5 5.4 60 761-821 107-170 (185)
128 COG3916 LasI N-acyl-L-homoseri 80.7 8.3 0.00018 40.8 8.8 83 734-817 50-159 (209)
129 TIGR03019 pepcterm_femAB FemAB 80.7 4.6 0.0001 44.9 7.6 82 739-821 197-281 (330)
130 cd04265 DUF619-NAGS-U DUF619 d 80.4 3.2 7E-05 38.9 5.2 48 743-790 15-63 (99)
131 PF02474 NodA: Nodulation prot 79.2 3.1 6.7E-05 42.7 4.9 53 761-815 85-137 (196)
132 COG5628 Predicted acetyltransf 78.5 12 0.00026 36.5 8.3 84 740-828 40-131 (143)
133 PF14446 Prok-RING_1: Prokaryo 75.4 1.8 3.9E-05 36.3 1.7 30 509-538 5-38 (54)
134 KOG1473 Nucleosome remodeling 74.6 1.8 3.8E-05 54.8 2.1 45 577-635 345-389 (1414)
135 KOG2535 RNA polymerase II elon 74.0 3.6 7.8E-05 46.2 4.1 50 772-822 498-548 (554)
136 PF13771 zf-HC5HC2H: PHD-like 69.6 2.1 4.6E-05 38.4 1.0 33 577-617 37-71 (90)
137 PF07227 DUF1423: Protein of u 69.3 5 0.00011 46.7 4.0 64 578-645 130-203 (446)
138 PF04377 ATE_C: Arginine-tRNA- 67.6 23 0.00051 34.7 7.8 64 736-800 38-101 (128)
139 PF13880 Acetyltransf_13: ESCO 66.7 4.6 9.9E-05 35.7 2.4 27 763-789 7-33 (70)
140 KOG1081 Transcription factor N 65.7 6 0.00013 46.7 3.9 48 505-553 85-132 (463)
141 PF07897 DUF1675: Protein of u 65.4 7.9 0.00017 42.8 4.5 65 214-283 210-283 (284)
142 PF01853 MOZ_SAS: MOZ/SAS fami 63.3 29 0.00062 36.4 7.8 33 762-794 81-113 (188)
143 PF14446 Prok-RING_1: Prokaryo 61.3 4.9 0.00011 33.8 1.5 38 577-619 6-43 (54)
144 PF13444 Acetyltransf_5: Acety 60.8 16 0.00035 33.7 5.1 25 759-783 76-100 (101)
145 PRK14852 hypothetical protein; 58.7 25 0.00055 45.1 7.7 65 758-822 118-182 (989)
146 PF12861 zf-Apc11: Anaphase-pr 58.5 4.2 9.1E-05 37.2 0.7 45 508-553 20-79 (85)
147 PF07897 DUF1675: Protein of u 57.6 6.9 0.00015 43.3 2.3 32 451-482 252-283 (284)
148 PF01233 NMT: Myristoyl-CoA:pr 56.5 31 0.00068 35.3 6.5 49 751-799 98-148 (162)
149 PRK00756 acyltransferase NodA; 55.8 19 0.00042 36.9 4.9 61 739-800 56-123 (196)
150 PRK01305 arginyl-tRNA-protein 55.1 60 0.0013 35.3 8.9 57 743-800 150-206 (240)
151 PF00385 Chromo: Chromo (CHRro 53.8 2.9 6.3E-05 34.2 -1.0 31 675-705 20-50 (55)
152 KOG1701 Focal adhesion adaptor 53.7 4.7 0.0001 46.5 0.3 35 578-614 396-430 (468)
153 PF15446 zf-PHD-like: PHD/FYVE 52.4 9.4 0.0002 39.1 2.1 59 578-640 1-63 (175)
154 PLN03238 probable histone acet 51.8 32 0.00069 38.3 6.2 32 763-794 157-188 (290)
155 KOG1829 Uncharacterized conser 51.5 5.6 0.00012 47.9 0.4 51 578-641 513-563 (580)
156 KOG4628 Predicted E3 ubiquitin 45.4 13 0.00029 42.2 2.2 43 510-553 230-275 (348)
157 KOG2779 N-myristoyl transferas 44.1 35 0.00076 38.9 5.1 79 736-814 133-226 (421)
158 KOG2747 Histone acetyltransfer 44.0 20 0.00044 41.3 3.3 25 764-788 263-287 (396)
159 TIGR03244 arg_catab_AstA argin 43.1 44 0.00095 38.0 5.8 50 735-784 53-140 (336)
160 KOG2036 Predicted P-loop ATPas 42.8 22 0.00048 43.7 3.5 29 762-790 615-643 (1011)
161 PF13832 zf-HC5HC2H_2: PHD-zin 41.1 13 0.00028 34.8 1.0 31 508-538 54-87 (110)
162 PF04958 AstA: Arginine N-succ 40.9 34 0.00073 39.0 4.5 83 736-819 58-186 (342)
163 TIGR03245 arg_AOST_alph argini 39.3 50 0.0011 37.6 5.4 50 735-784 54-141 (336)
164 TIGR03243 arg_catab_AOST argin 39.2 51 0.0011 37.5 5.5 50 735-784 53-140 (335)
165 PLN00104 MYST -like histone ac 39.0 33 0.00072 40.4 4.1 31 763-793 308-338 (450)
166 PLN03239 histone acetyltransfe 38.6 60 0.0013 37.1 5.9 32 763-794 215-246 (351)
167 PTZ00064 histone acetyltransfe 38.5 49 0.0011 39.4 5.3 32 763-794 386-417 (552)
168 PRK10456 arginine succinyltran 38.3 51 0.0011 37.6 5.3 50 735-784 55-142 (344)
169 PF13771 zf-HC5HC2H: PHD-like 38.1 16 0.00035 32.7 1.2 30 509-538 36-68 (90)
170 PF11793 FANCL_C: FANCL C-term 37.8 18 0.00039 31.7 1.4 34 578-614 4-39 (70)
171 KOG1428 Inhibitor of type V ad 37.3 7.1 0.00015 50.7 -1.6 49 506-554 3483-3542(3738)
172 PF13901 DUF4206: Domain of un 36.7 28 0.0006 36.6 2.8 35 578-613 154-188 (202)
173 KOG1632 Uncharacterized PHD Zn 35.4 21 0.00045 40.7 1.8 47 596-644 74-120 (345)
174 PF09924 DUF2156: Uncharacteri 34.7 2.3E+02 0.005 31.0 9.8 69 735-804 178-248 (299)
175 PF13639 zf-RING_2: Ring finge 34.5 3.9 8.4E-05 32.0 -3.0 39 510-551 1-43 (44)
176 PF12261 T_hemolysin: Thermost 34.4 1E+02 0.0022 32.1 6.4 55 760-819 86-140 (179)
177 PF07649 C1_3: C1-like domain; 33.4 18 0.00039 26.3 0.6 29 578-612 2-30 (30)
178 cd00024 CHROMO Chromatin organ 32.9 17 0.00036 29.2 0.4 24 674-697 20-43 (55)
179 PF13901 DUF4206: Domain of un 32.8 32 0.00069 36.2 2.5 38 508-552 151-196 (202)
180 TIGR03827 GNAT_ablB putative b 31.9 62 0.0013 35.0 4.7 43 778-821 22-64 (266)
181 COG5027 SAS2 Histone acetyltra 30.3 24 0.00052 40.0 1.1 24 762-785 263-286 (395)
182 PF04216 FdhE: Protein involve 30.0 32 0.00068 38.0 2.0 37 506-552 169-218 (290)
183 KOG1246 DNA-binding protein ju 29.6 36 0.00078 43.6 2.7 46 508-553 154-203 (904)
184 KOG3612 PHD Zn-finger protein 28.4 45 0.00097 39.9 2.9 47 507-553 58-107 (588)
185 KOG1734 Predicted RING-contain 28.2 18 0.00039 39.6 -0.2 34 505-538 220-263 (328)
186 COG2401 ABC-type ATPase fused 27.4 44 0.00094 39.3 2.6 61 759-820 239-307 (593)
187 PF11793 FANCL_C: FANCL C-term 27.1 32 0.00069 30.1 1.1 29 510-538 3-39 (70)
188 PF13066 DUF3929: Protein of u 26.9 59 0.0013 27.5 2.5 30 284-313 4-33 (65)
189 KOG3612 PHD Zn-finger protein 26.3 39 0.00084 40.4 2.0 40 594-637 69-108 (588)
190 PF14545 DBB: Dof, BCAP, and B 25.2 2.2E+02 0.0048 28.7 6.8 61 735-828 65-125 (142)
191 PF05301 Mec-17: Touch recepto 24.3 65 0.0014 31.5 2.7 23 767-789 52-74 (120)
192 PF12861 zf-Apc11: Anaphase-pr 23.7 34 0.00074 31.5 0.7 14 600-613 49-62 (85)
193 PTZ00062 glutaredoxin; Provisi 23.5 3.4E+02 0.0074 28.8 8.2 63 683-761 21-83 (204)
194 PF10497 zf-4CXXC_R1: Zinc-fin 22.9 24 0.00052 33.5 -0.4 51 578-636 9-69 (105)
195 KOG1642 Ribonuclease, T2 famil 22.3 54 0.0012 35.8 2.0 59 262-320 117-190 (263)
196 KOG4628 Predicted E3 ubiquitin 21.9 40 0.00086 38.5 0.9 46 577-636 230-275 (348)
197 PF10187 Nefa_Nip30_N: N-termi 21.9 70 0.0015 30.3 2.5 26 286-311 35-60 (102)
198 cd04266 DUF619-NAGS-FABP DUF61 21.6 2.1E+02 0.0045 27.5 5.5 46 743-788 15-67 (108)
199 cd03173 DUF619-like DUF619 dom 21.0 2.3E+02 0.0051 26.7 5.7 48 743-790 15-62 (98)
200 PF04393 DUF535: Protein of un 20.5 3.8E+02 0.0083 29.8 8.2 71 730-800 119-206 (288)
201 PRK03564 formate dehydrogenase 20.2 1.4E+02 0.0031 33.7 4.8 13 506-518 184-196 (309)
202 smart00298 CHROMO Chromatin or 20.1 37 0.0008 27.1 0.2 31 674-705 18-48 (55)
No 1
>PRK10314 putative acyltransferase; Provisional
Probab=99.21 E-value=5.5e-11 Score=117.68 Aligned_cols=82 Identities=15% Similarity=0.105 Sum_probs=73.0
Q ss_pred EEEEeCCEEEEeEEEEEEcC--ceEEEeEeEeeccccccChhHHHHHHHHHHHhhC-CccEEEecchhhHHHHHHhccCc
Q 003068 740 VILTVKSVVVSAGLLRIFGR--EVAELPLVATCREYQGKGCFQALFSCIERLLCSL-NVENLVLPAAEKAESIWTKKFGF 816 (851)
Q Consensus 740 ~vl~~~~~~V~aA~lri~g~--~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~l-gV~~LvL~A~~~A~~~w~~kfGF 816 (851)
++++.++++||+|+++..+. ..++|-+|||+++|||+|+|++||+.+++.++.. +...++|.|+..|++||+ ||||
T Consensus 51 ~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~-k~GF 129 (153)
T PRK10314 51 ILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQ-SFGF 129 (153)
T ss_pred EEEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHH-HCCC
Confidence 45578999999999987543 3589999999999999999999999999998875 788999999999999999 9999
Q ss_pred EEcCHH
Q 003068 817 RKMSRE 822 (851)
Q Consensus 817 ~~i~~~ 822 (851)
+.+++.
T Consensus 130 ~~~g~~ 135 (153)
T PRK10314 130 IPVTEV 135 (153)
T ss_pred EECCCc
Confidence 999974
No 2
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.14 E-value=5.5e-11 Score=117.13 Aligned_cols=91 Identities=16% Similarity=0.309 Sum_probs=79.4
Q ss_pred eecCeEEEEEEeCCEEEEeEEEE-EEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHH
Q 003068 733 EFGGMYSVILTVKSVVVSAGLLR-IFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWT 811 (851)
Q Consensus 733 ~~~Gfy~~vl~~~~~~V~aA~lr-i~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~ 811 (851)
++..|+.+ +.+|.+||||.+. +.+.+++||.-|||+|+|||+|+|..|++.|+..|+++|++++++.|. . .+-|+
T Consensus 38 ~i~dF~i~--E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G~G~~Ll~~~~~~Ar~~gi~~lf~LTt-~-~~~~F 113 (153)
T COG1246 38 EIDDFTII--ERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSGRGERLLERLLADARELGIKELFVLTT-R-SPEFF 113 (153)
T ss_pred HHhhheee--eeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCCcHHHHHHHHHHHHHHcCCceeeeeec-c-cHHHH
Confidence 44667665 7899999999999 789999999999999999999999999999999999999999999995 2 44555
Q ss_pred hccCcEEcCHHHHHhh
Q 003068 812 KKFGFRKMSRERLLKY 827 (851)
Q Consensus 812 ~kfGF~~i~~~~~~~~ 827 (851)
.++||+.++.+++..-
T Consensus 114 ~~~GF~~vd~~~LP~~ 129 (153)
T COG1246 114 AERGFTRVDKDELPEE 129 (153)
T ss_pred HHcCCeECccccCCHH
Confidence 5999999999666543
No 3
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.11 E-value=5.7e-10 Score=97.32 Aligned_cols=77 Identities=21% Similarity=0.194 Sum_probs=66.8
Q ss_pred eEEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCc
Q 003068 737 MYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGF 816 (851)
Q Consensus 737 fy~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF 816 (851)
-+.+++++++++||++.+...+ +.+.|..+||+|+|||||+|+.||..+.+.+.. ..+++.+.+.+.+||+ ++||
T Consensus 3 ~~~~~~~~~~~ivG~~~~~~~~-~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~-~~GF 77 (79)
T PF13508_consen 3 ERFFVAEDDGEIVGFIRLWPNE-DFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYE-KLGF 77 (79)
T ss_dssp EEEEEEEETTEEEEEEEEEETT-TEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHH-HTTE
T ss_pred cEEEEEEECCEEEEEEEEEEcC-CEEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHH-HCcC
Confidence 3567779999999999996544 489999999999999999999999999888854 5678888899999999 9999
Q ss_pred EE
Q 003068 817 RK 818 (851)
Q Consensus 817 ~~ 818 (851)
++
T Consensus 78 ~~ 79 (79)
T PF13508_consen 78 EE 79 (79)
T ss_dssp EE
T ss_pred CC
Confidence 85
No 4
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=99.08 E-value=5.7e-11 Score=136.42 Aligned_cols=132 Identities=26% Similarity=0.595 Sum_probs=92.6
Q ss_pred cccccccCC-----CceeecCC--CCCcccccccCCCCCCCCCccccCCCC-----CCCCC-------C-----------
Q 003068 510 DMCHVCGDG-----ENLLLCNG--CPLAFHAACLDPLLIPESGWRCPNCRQ-----GHSSS-------M----------- 559 (851)
Q Consensus 510 d~C~vCgdg-----G~Ll~Cd~--C~~afH~~Cl~~~~vp~g~W~C~~C~~-----~~~~e-------a----------- 559 (851)
.-|.||.|+ ..|++||+ |.-+.|+.|+++..||.|.|||+.|.. .+.++ +
T Consensus 6 GGCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAH 85 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAH 85 (900)
T ss_pred cceeeecCcCCCccCceeeecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCcccceecccCCCceE
Confidence 459999875 48999999 999999999999999999999999965 11121 0
Q ss_pred -----------------cccccccCCccCCCCC-ccccccCCCCcCCCCccCCCceeecC--CCCCcccccccCCCCCCC
Q 003068 560 -----------------SRSVDLKGGLEAPGAE-VGGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRKNGLCD 619 (851)
Q Consensus 560 -----------------~dpI~l~r~~~~~~~~-~~~C~iC~~~~~~~~~~d~~~LL~Cd--qC~r~fHv~CL~~~g~~~ 619 (851)
++||-+-.+ |... ...||||.+.+... ...-+..+.|. .|.++||+.|.+-.|+..
T Consensus 86 VVCALYIPEVrFgNV~TMEPIiLq~V---P~dRfnKtCYIC~E~Grpn-kA~~GACMtCNKs~CkqaFHVTCAQ~~GLLC 161 (900)
T KOG0956|consen 86 VVCALYIPEVRFGNVHTMEPIILQDV---PHDRFNKTCYICNEEGRPN-KAAKGACMTCNKSGCKQAFHVTCAQRAGLLC 161 (900)
T ss_pred EEEEeeccceeecccccccceeeccC---chhhhcceeeeecccCCcc-ccccccceecccccchhhhhhhHhhhhccce
Confidence 233311111 1111 13799999875421 12356788997 899999999999877655
Q ss_pred cccC-CCCC-cEECCCchhHHHHHhhhhc
Q 003068 620 LKEI-PKDK-WFCCDDCNRIHAALQDFVS 646 (851)
Q Consensus 620 L~e~-P~g~-WfCc~~C~~i~~~LqkLv~ 646 (851)
-++. --++ =|| ..|+..+.+|.+--.
T Consensus 162 EE~gn~~dNVKYC-GYCk~HfsKlkk~~~ 189 (900)
T KOG0956|consen 162 EEEGNISDNVKYC-GYCKYHFSKLKKSPA 189 (900)
T ss_pred eccccccccceec-hhHHHHHHHhhcCCC
Confidence 4442 1233 366 999999999988643
No 5
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.06 E-value=9.9e-10 Score=95.17 Aligned_cols=74 Identities=22% Similarity=0.279 Sum_probs=68.3
Q ss_pred EeCCEEEEeEEEEEEcC-----ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHHHHhcc
Q 003068 743 TVKSVVVSAGLLRIFGR-----EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESIWTKKF 814 (851)
Q Consensus 743 ~~~~~~V~aA~lri~g~-----~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~---~~A~~~w~~kf 814 (851)
+++|+|||++.+++... ..+.|..++|+++|||+|+|+.||+.+++.++..|+..|.+.+. ..+..||+ |+
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~-k~ 80 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYE-KL 80 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHH-HT
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHH-Hc
Confidence 68999999999999876 59999999999999999999999999999999999999988777 45669999 99
Q ss_pred CcE
Q 003068 815 GFR 817 (851)
Q Consensus 815 GF~ 817 (851)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 6
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=99.02 E-value=7.9e-11 Score=123.37 Aligned_cols=93 Identities=29% Similarity=0.837 Sum_probs=78.3
Q ss_pred ccccccccC----------CCceeecCCCCCcccccccCCC-----CCCCCCccccCCCCCCCCCCcccccccCCccCCC
Q 003068 509 DDMCHVCGD----------GENLLLCNGCPLAFHAACLDPL-----LIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAPG 573 (851)
Q Consensus 509 dd~C~vCgd----------gG~Ll~Cd~C~~afH~~Cl~~~-----~vp~g~W~C~~C~~~~~~ea~dpI~l~r~~~~~~ 573 (851)
..+|.-|-. ..+|+.|..|+|+-|..||... .|....|+|..|+
T Consensus 224 n~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck--------------------- 282 (336)
T KOG1244|consen 224 NPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECK--------------------- 282 (336)
T ss_pred CcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecc---------------------
Confidence 456777742 3589999999999999999853 4567899999996
Q ss_pred CCccccccCCCCcCCCCccCCCceeecCCCCCcccccccCCCCCCCcccCCCCCcEECCCchhH
Q 003068 574 AEVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRI 637 (851)
Q Consensus 574 ~~~~~C~iC~~~~~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~e~P~g~WfCc~~C~~i 637 (851)
.|.||+-.+ ++..||.||-|+|.||+.||.| +|.+.|+|.|-| .-|-..
T Consensus 283 ----~csicgtse------nddqllfcddcdrgyhmyclsp----pm~eppegswsc-~KOG~~ 331 (336)
T KOG1244|consen 283 ----YCSICGTSE------NDDQLLFCDDCDRGYHMYCLSP----PMVEPPEGSWSC-HLCLEE 331 (336)
T ss_pred ----eeccccCcC------CCceeEeecccCCceeeEecCC----CcCCCCCCchhH-HHHHHH
Confidence 899999654 5789999999999999999997 788999999999 777543
No 7
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=99.00 E-value=4.7e-10 Score=111.14 Aligned_cols=95 Identities=26% Similarity=0.658 Sum_probs=73.6
Q ss_pred cccccc---C---CCceeecCCCCCcccccccCCCC--------CC--CCCccccCCCCCCCCCCcccccccCCccCCCC
Q 003068 511 MCHVCG---D---GENLLLCNGCPLAFHAACLDPLL--------IP--ESGWRCPNCRQGHSSSMSRSVDLKGGLEAPGA 574 (851)
Q Consensus 511 ~C~vCg---d---gG~Ll~Cd~C~~afH~~Cl~~~~--------vp--~g~W~C~~C~~~~~~ea~dpI~l~r~~~~~~~ 574 (851)
.|.+|+ + -|.|++|++|..+||+.|||+.. |. ....+|++|.. ..+..+...+
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig-----------~~~kKD~~aP 69 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIG-----------IAHKKDPRAP 69 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcC-----------hhhcccCCCC
Confidence 377784 2 37999999999999999999832 22 34579999964 3444556677
Q ss_pred CccccccCCCCcCCCCccC--------------------------------CCceeecCCCCCcccccccCCCC
Q 003068 575 EVGGCVICRSHDFSAATFD--------------------------------DRTVIYCDQCEKEFHVGCLRKNG 616 (851)
Q Consensus 575 ~~~~C~iC~~~~~~~~~~d--------------------------------~~~LL~CdqC~r~fHv~CL~~~g 616 (851)
.++.|..|++.+.+..+|. +..|+.|..|.|+||+.+|++.+
T Consensus 70 ~~~~C~~C~~~G~~c~pfr~r~T~kQEe~~ReeNgG~DPit~Vd~~lvnN~~nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 70 HHGMCQQCKKPGPSCKPFRPRKTPKQEEKLREENGGVDPITPVDPELVNNPDNVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred CCCcccccCCCCCCCcccCCCCCcHHHHHHHHHcCCCCCCccCCHHHccChhheEEecCCccceeehhhCCCCc
Confidence 8889999999887766552 33789999999999999998753
No 8
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=98.98 E-value=3e-09 Score=97.86 Aligned_cols=74 Identities=23% Similarity=0.349 Sum_probs=65.3
Q ss_pred eEEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCc
Q 003068 737 MYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGF 816 (851)
Q Consensus 737 fy~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF 816 (851)
...+|++.++++||.+.++ .-++|..++|+|+|||+|+|++||..+++.|+. |++.|.+.+...|.+||+ ++||
T Consensus 44 ~~~~v~~~~~~ivG~~~~~----~~~~i~~l~v~p~~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~-~~GF 117 (117)
T PF13673_consen 44 HTIFVAEEGGEIVGFAWLE----PDGEISHLYVLPEYRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYR-KLGF 117 (117)
T ss_dssp CEEEEEEETTEEEEEEEEE----TCEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHH-HTT-
T ss_pred CEEEEEEECCEEEEEEEEc----CCCeEEEEEEChhhcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHH-hCCC
Confidence 5667789999999999986 345699999999999999999999999999988 999999999999999999 9998
No 9
>PTZ00330 acetyltransferase; Provisional
Probab=98.90 E-value=8e-09 Score=99.04 Aligned_cols=83 Identities=23% Similarity=0.317 Sum_probs=72.4
Q ss_pred EEEEEEeCCEEEEeEEEEEE------cCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHH
Q 003068 738 YSVILTVKSVVVSAGLLRIF------GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWT 811 (851)
Q Consensus 738 y~~vl~~~~~~V~aA~lri~------g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~ 811 (851)
+.++...+|++||.+.+... +...++|..+.|.++|||+|+|++||..+++.++..|+.+++|.+...|..||+
T Consensus 53 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~ 132 (147)
T PTZ00330 53 RVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYK 132 (147)
T ss_pred EEEEEeCCCEEEEEEEEEeccccccCCCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHH
Confidence 34455578999999998653 223678999999999999999999999999999999999999999999999999
Q ss_pred hccCcEEcCH
Q 003068 812 KKFGFRKMSR 821 (851)
Q Consensus 812 ~kfGF~~i~~ 821 (851)
++||+....
T Consensus 133 -k~GF~~~~~ 141 (147)
T PTZ00330 133 -KLGFRACER 141 (147)
T ss_pred -HCCCEEece
Confidence 999998873
No 10
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=98.89 E-value=5.4e-09 Score=99.87 Aligned_cols=81 Identities=14% Similarity=0.086 Sum_probs=70.1
Q ss_pred EEEEeCCEEEEeEEEEEEc-----CceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHHHH
Q 003068 740 VILTVKSVVVSAGLLRIFG-----REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESIWT 811 (851)
Q Consensus 740 ~vl~~~~~~V~aA~lri~g-----~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~---~~A~~~w~ 811 (851)
+|+..++++||++.++... ...++|..++|+|+|||||+|+.||+.+++.++..|+..+.|.+. ..|+.||+
T Consensus 50 ~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~ 129 (144)
T PRK10146 50 HLALLDGEVVGMIGLHLQFHLHHVNWIGEIQELVVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYL 129 (144)
T ss_pred EEEEECCEEEEEEEEEecccccccchhheeheeEECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHH
Confidence 4567899999999987632 225789999999999999999999999999999999999999876 58999999
Q ss_pred hccCcEEcCH
Q 003068 812 KKFGFRKMSR 821 (851)
Q Consensus 812 ~kfGF~~i~~ 821 (851)
++||...+.
T Consensus 130 -~~Gf~~~~~ 138 (144)
T PRK10146 130 -REGYEQSHF 138 (144)
T ss_pred -HcCCchhhh
Confidence 999987643
No 11
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.86 E-value=7.3e-10 Score=116.81 Aligned_cols=93 Identities=23% Similarity=0.635 Sum_probs=77.8
Q ss_pred ccccccccccCC---------CceeecCCCCCcccccccCCC-----CCCCCCccccCCCCCCCCCCcccccccCCccCC
Q 003068 507 GSDDMCHVCGDG---------ENLLLCNGCPLAFHAACLDPL-----LIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAP 572 (851)
Q Consensus 507 ~~dd~C~vCgdg---------G~Ll~Cd~C~~afH~~Cl~~~-----~vp~g~W~C~~C~~~~~~ea~dpI~l~r~~~~~ 572 (851)
.....|.+|-++ ..+++|..|-.++|.+|+... .+....|.|..|+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~-------------------- 315 (381)
T KOG1512|consen 256 QRRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCE-------------------- 315 (381)
T ss_pred cchhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccH--------------------
Confidence 344679999764 479999999999999999863 3456789999996
Q ss_pred CCCccccccCCCCcCCCCccCCCceeecCCCCCcccccccCCCCCCCcccCCCCCcEECCCchh
Q 003068 573 GAEVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 636 (851)
Q Consensus 573 ~~~~~~C~iC~~~~~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~e~P~g~WfCc~~C~~ 636 (851)
.|.||+++. -+..++.||.|+|.||..|+. |..+|.|.|.|-..|..
T Consensus 316 -----lC~IC~~P~------~E~E~~FCD~CDRG~HT~CVG------L~~lP~G~WICD~~C~~ 362 (381)
T KOG1512|consen 316 -----LCRICLGPV------IESEHLFCDVCDRGPHTLCVG------LQDLPRGEWICDMRCRE 362 (381)
T ss_pred -----hhhccCCcc------cchheeccccccCCCCccccc------cccccCccchhhhHHHH
Confidence 899999885 367899999999999999996 78899999999555643
No 12
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=98.84 E-value=8.9e-09 Score=112.70 Aligned_cols=73 Identities=21% Similarity=0.335 Sum_probs=67.7
Q ss_pred EEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEcC
Q 003068 742 LTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMS 820 (851)
Q Consensus 742 l~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i~ 820 (851)
..+++++||++++.. .+|..|||+++|||+|+|++||+.+++.+++.|+++++|.+..++.+||+ |+||+.++
T Consensus 11 ~~~~~~iVG~~~l~~-----~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYe-k~GF~~~~ 83 (297)
T cd02169 11 FDDAGELIATGSIAG-----NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFR-GLGFKELA 83 (297)
T ss_pred EEECCEEEEEEEecc-----CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHH-HCCCEEec
Confidence 356799999998852 36899999999999999999999999999999999999999999999999 99999998
No 13
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=98.84 E-value=1.8e-08 Score=97.54 Aligned_cols=82 Identities=13% Similarity=0.241 Sum_probs=70.2
Q ss_pred EEEEEEe--CCEEEEeEEEEEEc------CceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHH
Q 003068 738 YSVILTV--KSVVVSAGLLRIFG------REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESI 809 (851)
Q Consensus 738 y~~vl~~--~~~~V~aA~lri~g------~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~ 809 (851)
|.+++.. ++++||.+.+.+.. ..++.|..++|.++|||||+|+.||+.+++.|+.+|+++|.|.+......|
T Consensus 54 ~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~ 133 (150)
T PLN02706 54 LICVIEDAASGRIIATGSVFVERKFIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAF 133 (150)
T ss_pred EEEEEEeCCCCcEEEEEEEEEEeecccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHH
Confidence 4445454 68999999985432 246778889999999999999999999999999999999999999888999
Q ss_pred HHhccCcEEcC
Q 003068 810 WTKKFGFRKMS 820 (851)
Q Consensus 810 w~~kfGF~~i~ 820 (851)
|+ |+||+..+
T Consensus 134 y~-k~GF~~~g 143 (150)
T PLN02706 134 YE-KCGYVRKE 143 (150)
T ss_pred HH-HCcCEEeh
Confidence 99 99999865
No 14
>PRK07757 acetyltransferase; Provisional
Probab=98.82 E-value=1.6e-08 Score=98.16 Aligned_cols=82 Identities=22% Similarity=0.353 Sum_probs=72.8
Q ss_pred EEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEcC
Q 003068 741 ILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMS 820 (851)
Q Consensus 741 vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i~ 820 (851)
++..++++||.+.+.+.+.+.++|-.|+|.|+|||+|+|+.||..+++.+.+.|+.++.+.+. +..||+ |+||+.++
T Consensus 45 i~~~~~~lvG~~~l~~~~~~~~~i~~v~V~p~~rg~Glg~~Ll~~l~~~a~~~g~~~i~~~~~--~~~~Y~-k~GF~~~~ 121 (152)
T PRK07757 45 VAEEEGEIVGCCALHILWEDLAEIRSLAVSEDYRGQGIGRMLVEACLEEARELGVKRVFALTY--QPEFFE-KLGFREVD 121 (152)
T ss_pred EEEECCEEEEEEEEEeccCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCeEEEEeC--cHHHHH-HCCCEEcc
Confidence 446789999999999888888999999999999999999999999999999999999876543 578999 99999998
Q ss_pred HHHHH
Q 003068 821 RERLL 825 (851)
Q Consensus 821 ~~~~~ 825 (851)
..++.
T Consensus 122 ~~~~~ 126 (152)
T PRK07757 122 KEALP 126 (152)
T ss_pred cccCC
Confidence 85543
No 15
>PRK07922 N-acetylglutamate synthase; Validated
Probab=98.80 E-value=2.1e-08 Score=100.77 Aligned_cols=79 Identities=18% Similarity=0.304 Sum_probs=71.3
Q ss_pred EEEE-eCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEE
Q 003068 740 VILT-VKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRK 818 (851)
Q Consensus 740 ~vl~-~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~ 818 (851)
+|++ .++++||.+.+.+...+.++|..++|+++|||+|+|++||+.+++.+++.|+++|.+... +..||+ |+||+.
T Consensus 48 ~va~~~~~~iiG~~~~~~~~~~~~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~~--~~~fY~-k~GF~~ 124 (169)
T PRK07922 48 WVAEHLDGEVVGCGALHVMWEDLAEIRTVAVDPAARGRGVGHAIVERLLDVARELGLSRVFVLTF--EVEFFA-RHGFVE 124 (169)
T ss_pred EEEEecCCcEEEEEEEeecCCCceEEEEEEECHHHhCCCHHHHHHHHHHHHHHHcCCCEEEEEec--cHHHHH-HCCCEE
Confidence 4556 889999999988777788999999999999999999999999999999999999987654 478999 999999
Q ss_pred cCH
Q 003068 819 MSR 821 (851)
Q Consensus 819 i~~ 821 (851)
++.
T Consensus 125 ~~~ 127 (169)
T PRK07922 125 IDG 127 (169)
T ss_pred Ccc
Confidence 875
No 16
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.78 E-value=3.3e-09 Score=125.93 Aligned_cols=147 Identities=28% Similarity=0.576 Sum_probs=99.0
Q ss_pred CCCCcccccccCCC--CCCCCCccccCCCC-CCCCCCcccccccCCccCCCCCccccccCCCCcCCCCccCCCceeecCC
Q 003068 526 GCPLAFHAACLDPL--LIPESGWRCPNCRQ-GHSSSMSRSVDLKGGLEAPGAEVGGCVICRSHDFSAATFDDRTVIYCDQ 602 (851)
Q Consensus 526 ~C~~afH~~Cl~~~--~vp~g~W~C~~C~~-~~~~ea~dpI~l~r~~~~~~~~~~~C~iC~~~~~~~~~~d~~~LL~Cdq 602 (851)
.|+|+||..|+.|. ..|+++|.|+.|.. ..+.++.+. .....+...|.+|.. .++++.|+.
T Consensus 1 ~~~r~~~~~~~~p~~~~~~~~~~k~~~~e~~~~~~~~~~~-------~~~~~~~e~c~ic~~---------~g~~l~c~t 64 (696)
T KOG0383|consen 1 TCPRAYHRVCLDPKLKEEPEMDPKCPGCESSSAQVEAKDD-------DWDDAEQEACRICAD---------GGELLWCDT 64 (696)
T ss_pred CCCcccCcCCCCcccccCCcCCccCcchhhcccccccccC-------CcchhhhhhhhhhcC---------CCcEEEecc
Confidence 48999999999973 55689999999864 223322110 012234468999984 578999999
Q ss_pred CCCcccccccCCCCCCCcccCCCCCcEECCCch--hHHHHHhhhhcCCccccCCC---ccchhhhhhhcccccccCCcch
Q 003068 603 CEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCN--RIHAALQDFVSNRAQTIPAS---SLSTINRKHIEKGILFDGTMND 677 (851)
Q Consensus 603 C~r~fHv~CL~~~g~~~L~e~P~g~WfCc~~C~--~i~~~LqkLv~~~~e~lp~~---l~~~I~rk~ee~gi~~d~~~~~ 677 (851)
|+.+||..|+.+ ++...|.++|.|+ .|. ....++++++.|+..+.+.+ ..+.+. .....++. .+++.
T Consensus 65 C~~s~h~~cl~~----pl~~~p~~~~~c~-Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~re~~ 136 (696)
T KOG0383|consen 65 CPASFHASCLGP----PLTPQPNGEFICP-RCFCPKNAGKIEKILGWRWKPTPKPREGNQGVIS-PRRSNGIV--EREFF 136 (696)
T ss_pred ccHHHHHHccCC----CCCcCCccceeee-eeccCCCcccccccceeEecCCCCccccCcCccC-Ccccccch--hhhcc
Confidence 999999999986 6788898889995 662 23346677777554333322 222221 11122332 57899
Q ss_pred hhhhhhhccccchhhhhhh
Q 003068 678 VQWQMLKKAQCFEEKEKSL 696 (851)
Q Consensus 678 vkW~lLs~~~~swe~~~~l 696 (851)
++|+.++|++|.|....++
T Consensus 137 vk~qg~s~~~c~~~~e~~~ 155 (696)
T KOG0383|consen 137 VKWQGLSYWHCSWKSELLL 155 (696)
T ss_pred cccccCCccchhHHHHHHh
Confidence 9999999999999844333
No 17
>PRK03624 putative acetyltransferase; Provisional
Probab=98.78 E-value=2.1e-08 Score=94.15 Aligned_cols=83 Identities=16% Similarity=0.222 Sum_probs=70.2
Q ss_pred EEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHHHHhcc
Q 003068 738 YSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESIWTKKF 814 (851)
Q Consensus 738 y~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~---~~A~~~w~~kf 814 (851)
+.+|+..++++||.+.+.. ....+.+..|+|+++|||||+|+.|++.+++.++.+|++++.+.+. ..++.+|. |+
T Consensus 46 ~~~v~~~~~~~vG~~~~~~-~~~~~~i~~i~v~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~-k~ 123 (140)
T PRK03624 46 LFLVAEVGGEVVGTVMGGY-DGHRGWAYYLAVHPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYE-AL 123 (140)
T ss_pred eEEEEEcCCcEEEEEEeec-cCCCceEEEEEECHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHH-Hc
Confidence 4456678899999998764 3345678899999999999999999999999999999999888765 46899998 99
Q ss_pred CcEEcCHH
Q 003068 815 GFRKMSRE 822 (851)
Q Consensus 815 GF~~i~~~ 822 (851)
||+..+..
T Consensus 124 GF~~~~~~ 131 (140)
T PRK03624 124 GYEEQDRI 131 (140)
T ss_pred CCccccEE
Confidence 99986643
No 18
>PLN02825 amino-acid N-acetyltransferase
Probab=98.78 E-value=2.2e-08 Score=116.68 Aligned_cols=88 Identities=25% Similarity=0.376 Sum_probs=77.7
Q ss_pred EEEEeCCEEEEeEEEEEEc-CceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEE
Q 003068 740 VILTVKSVVVSAGLLRIFG-REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRK 818 (851)
Q Consensus 740 ~vl~~~~~~V~aA~lri~g-~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~ 818 (851)
+|++.+|++||+|.+..+. .+.+||-.|||+|+|||+|+|++||+.+|+.++++|+++|+|.+ ..|..||. ++||..
T Consensus 410 ~V~e~Dg~IVG~aal~~~~~~~~aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Llt-t~a~~fY~-k~GF~~ 487 (515)
T PLN02825 410 VVVEREGSIIACAALFPFFEEKCGEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLT-TRTADWFV-RRGFSE 487 (515)
T ss_pred EEEEECCEEEEEEEEEeecCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEe-CcHHHHHH-HCCCEE
Confidence 3458899999999987664 46899999999999999999999999999999999999999987 56889999 999999
Q ss_pred cCHHHHHhhhc
Q 003068 819 MSRERLLKYQR 829 (851)
Q Consensus 819 i~~~~~~~~~~ 829 (851)
.+.+++..-++
T Consensus 488 ~~~~~lp~~~~ 498 (515)
T PLN02825 488 CSIESLPEARR 498 (515)
T ss_pred eChhhCCHHHH
Confidence 99987765544
No 19
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=98.76 E-value=5.7e-08 Score=91.17 Aligned_cols=79 Identities=22% Similarity=0.237 Sum_probs=66.6
Q ss_pred EEEEEEeCCEEEEeEEEEEE-----cC--ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHH
Q 003068 738 YSVILTVKSVVVSAGLLRIF-----GR--EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIW 810 (851)
Q Consensus 738 y~~vl~~~~~~V~aA~lri~-----g~--~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w 810 (851)
++++.++++++||.+.+-.. |. .++-|--|||.|+|||||+|++||+++++.+++.|+..++|-+ ...+||
T Consensus 42 ~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~--~~~~~Y 119 (127)
T PF13527_consen 42 RCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVAVDPEYRGRGLGRQLMRALLERARERGVPFIFLFP--SSPPFY 119 (127)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE---SSHHHH
T ss_pred cEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec--CChhhh
Confidence 56777889999999988554 33 4789999999999999999999999999999999999999877 447899
Q ss_pred HhccCcEEc
Q 003068 811 TKKFGFRKM 819 (851)
Q Consensus 811 ~~kfGF~~i 819 (851)
. +|||+.+
T Consensus 120 ~-~~G~~~~ 127 (127)
T PF13527_consen 120 R-RFGFEYA 127 (127)
T ss_dssp H-HTTEEEE
T ss_pred h-cCCCEEC
Confidence 9 9999864
No 20
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.72 E-value=2.3e-08 Score=111.04 Aligned_cols=82 Identities=16% Similarity=0.247 Sum_probs=73.9
Q ss_pred CeEEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccC
Q 003068 736 GMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFG 815 (851)
Q Consensus 736 Gfy~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfG 815 (851)
--|+++++.++++||+|++ .|. .|..|||+++|||+|+|+.||+.+++.+++.|+.+++|.+.+.+..||+ ++|
T Consensus 30 ~d~~vv~~~~~~lVg~g~l--~g~---~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~-klG 103 (332)
T TIGR00124 30 LEIFIAVYEDEEIIGCGGI--AGN---VIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFE-YCG 103 (332)
T ss_pred CCEEEEEEECCEEEEEEEE--ecC---EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHH-HcC
Confidence 3567778899999999997 343 4889999999999999999999999999999999999999999999999 999
Q ss_pred cEEcCHHH
Q 003068 816 FRKMSRER 823 (851)
Q Consensus 816 F~~i~~~~ 823 (851)
|..+....
T Consensus 104 F~~i~~~~ 111 (332)
T TIGR00124 104 FKTLAEAK 111 (332)
T ss_pred CEEeeeec
Confidence 99998643
No 21
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.71 E-value=3.1e-08 Score=96.58 Aligned_cols=85 Identities=20% Similarity=0.166 Sum_probs=73.5
Q ss_pred EEEEe-CCEEEEeEEEEEEcCceEE--EeEeEeeccccccChhHHHHHHHHHHHhhCC-ccEEEecchhhHHHHHHhccC
Q 003068 740 VILTV-KSVVVSAGLLRIFGREVAE--LPLVATCREYQGKGCFQALFSCIERLLCSLN-VENLVLPAAEKAESIWTKKFG 815 (851)
Q Consensus 740 ~vl~~-~~~~V~aA~lri~g~~~AE--lp~vAt~~~~RgqG~gr~L~~~iE~~l~~lg-V~~LvL~A~~~A~~~w~~kfG 815 (851)
+.++. +|++|++|||-..+....+ |-||+|.+++||+|+|+.||....+.+.... =+-+.|.||..++.||- +||
T Consensus 52 l~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fYa-~~G 130 (155)
T COG2153 52 LLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFYA-SFG 130 (155)
T ss_pred EEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHHH-HhC
Confidence 34454 9999999999887766555 9999999999999999999998888887776 56799999999999999 999
Q ss_pred cEEcCHHHHH
Q 003068 816 FRKMSRERLL 825 (851)
Q Consensus 816 F~~i~~~~~~ 825 (851)
|.+.+++-+.
T Consensus 131 Fv~~~e~yle 140 (155)
T COG2153 131 FVRVGEEYLE 140 (155)
T ss_pred cEEcCchhhc
Confidence 9999997543
No 22
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.69 E-value=5.5e-08 Score=111.47 Aligned_cols=83 Identities=19% Similarity=0.328 Sum_probs=73.3
Q ss_pred EEEeCCEEEEeEEEEEEc-CceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEc
Q 003068 741 ILTVKSVVVSAGLLRIFG-REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKM 819 (851)
Q Consensus 741 vl~~~~~~V~aA~lri~g-~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i 819 (851)
|++.++++||++.+..+. ...++|-.++|+++|||||+|++||+.+|+.|++.|+++|++.+. .+..||+ ++||+.+
T Consensus 326 V~~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~-~a~~fY~-k~GF~~~ 403 (429)
T TIGR01890 326 IIEHDGNIIGCAALYPYAEEDCGEMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTT-RTGHWFR-ERGFQTA 403 (429)
T ss_pred EEEECCEEEEEEEEEecCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeec-chHHHHH-HCCCEEC
Confidence 457899999999998764 468999999999999999999999999999999999999887654 5789999 9999999
Q ss_pred CHHHHH
Q 003068 820 SRERLL 825 (851)
Q Consensus 820 ~~~~~~ 825 (851)
+..++.
T Consensus 404 g~~~l~ 409 (429)
T TIGR01890 404 SVDELP 409 (429)
T ss_pred ChhhCC
Confidence 986544
No 23
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=98.66 E-value=9.9e-08 Score=97.20 Aligned_cols=80 Identities=15% Similarity=0.083 Sum_probs=70.9
Q ss_pred EEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHHHHhccCcE
Q 003068 741 ILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESIWTKKFGFR 817 (851)
Q Consensus 741 vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~---~~A~~~w~~kfGF~ 817 (851)
+...+|++||.+.+.......++|-.++|.++|||+|+|+.|+.++++.+..+|+.+|.+... ..|+.||+ |+||+
T Consensus 103 ~~~~~g~iiG~i~l~~~~~~~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~-klGF~ 181 (191)
T TIGR02382 103 LRDASGDPRGYVTLRELNDTDARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYI-RSGAN 181 (191)
T ss_pred EEccCCeEEEEEEEEecCCCceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHH-HcCCc
Confidence 345689999999998776667899999999999999999999999999999999999998854 56899999 99998
Q ss_pred EcCH
Q 003068 818 KMSR 821 (851)
Q Consensus 818 ~i~~ 821 (851)
..+.
T Consensus 182 ~~~~ 185 (191)
T TIGR02382 182 IEST 185 (191)
T ss_pred cccc
Confidence 7654
No 24
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=98.65 E-value=6.2e-09 Score=116.36 Aligned_cols=106 Identities=31% Similarity=0.781 Sum_probs=75.5
Q ss_pred ccccccccccCC-----CceeecCCCCCcccccccCCCCCCCCCccccCCCCCC----------CC-CC-----------
Q 003068 507 GSDDMCHVCGDG-----ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQGH----------SS-SM----------- 559 (851)
Q Consensus 507 ~~dd~C~vCgdg-----G~Ll~Cd~C~~afH~~Cl~~~~vp~g~W~C~~C~~~~----------~~-ea----------- 559 (851)
+-|+.|.+|... ..+++||+|.-+.|+.|+|++.+|+|.|+|+.|.... .. ++
T Consensus 191 ~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~peG~WlCrkCi~~~~~i~~C~fCps~dGaFkqT~dgrW~H 270 (669)
T COG5141 191 EFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPEGFWLCRKCIYGEYQIRCCSFCPSSDGAFKQTSDGRWGH 270 (669)
T ss_pred hhhhhhHhccccccCCcceEEEecCcchhhhhhcccceecCcchhhhhhhcccccceeEEEeccCCCCceeeccCCchHh
Confidence 356788888743 5799999999999999999999999999999996521 11 11
Q ss_pred -----------------cccccccCCccCCCCCccccccCCCCcCCCCccCCCceeecC--CCCCcccccccCCCCCCCc
Q 003068 560 -----------------SRSVDLKGGLEAPGAEVGGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRKNGLCDL 620 (851)
Q Consensus 560 -----------------~dpI~l~r~~~~~~~~~~~C~iC~~~~~~~~~~d~~~LL~Cd--qC~r~fHv~CL~~~g~~~L 620 (851)
+|||+-+..+..... ..+|.+|++. .++.++|. .|-++||+.|.+..|.-++
T Consensus 271 ~iCA~~~pelsF~~l~~~dpI~~i~sVs~srw-kl~C~iCk~~--------~GtcIqCs~~nC~~aYHVtCArrag~f~~ 341 (669)
T COG5141 271 VICAMFNPELSFGHLLSKDPIDNIASVSSSRW-KLGCLICKEF--------GGTCIQCSYFNCTRAYHVTCARRAGYFDL 341 (669)
T ss_pred HhHHHhcchhccccccccchhhhhcccchhhH-hheeeEEccc--------Ccceeeecccchhhhhhhhhhhhcchhhh
Confidence 222211100000001 1479999974 68999998 7999999999998877665
Q ss_pred c
Q 003068 621 K 621 (851)
Q Consensus 621 ~ 621 (851)
.
T Consensus 342 ~ 342 (669)
T COG5141 342 N 342 (669)
T ss_pred h
Confidence 4
No 25
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=98.65 E-value=1.1e-07 Score=96.96 Aligned_cols=84 Identities=15% Similarity=0.106 Sum_probs=71.9
Q ss_pred eEEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHHHHhc
Q 003068 737 MYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESIWTKK 813 (851)
Q Consensus 737 fy~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~---~~A~~~w~~k 813 (851)
++.++...++++||.+.+...+...++|-.++|.++|||||+|+.|+..+++.+++.|+.++++.+. ..|..||+ |
T Consensus 102 ~~~v~~~~~g~~vG~~~l~~~~~~~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~ye-k 180 (194)
T PRK10975 102 QCLLLRDASGQIQGFVTLRELNDTDARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYI-R 180 (194)
T ss_pred cEEEEEcCCCCEEEEEEEEecCCCceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHH-H
Confidence 3333334578999999998777777899999999999999999999999999999999999988754 57899999 9
Q ss_pred cCcEEcCH
Q 003068 814 FGFRKMSR 821 (851)
Q Consensus 814 fGF~~i~~ 821 (851)
+||+..+.
T Consensus 181 ~Gf~~~~~ 188 (194)
T PRK10975 181 SGANIEST 188 (194)
T ss_pred CCCeEeEE
Confidence 99998653
No 26
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=98.65 E-value=1.5e-07 Score=87.45 Aligned_cols=81 Identities=22% Similarity=0.320 Sum_probs=69.4
Q ss_pred EEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEec---chhhHHHHHHhccCc
Q 003068 740 VILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLP---AAEKAESIWTKKFGF 816 (851)
Q Consensus 740 ~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~---A~~~A~~~w~~kfGF 816 (851)
++.+.++++||.+.++.. .....+-.++|.++|||||+|+.|++++++.+...|+.++++. ....+..||+ ++||
T Consensus 34 ~~~~~~~~~vg~~~~~~~-~~~~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~-~~Gf 111 (131)
T TIGR01575 34 LLARIGGKVVGYAGVQIV-LDEAHILNIAVKPEYQGQGIGRALLRELIDEAKGRGVNEIFLEVRVSNIAAQALYK-KLGF 111 (131)
T ss_pred EEEecCCeEEEEEEEEec-CCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCeEEEEEecccHHHHHHHH-HcCC
Confidence 344578999999998753 3456788899999999999999999999999999999999984 4466889999 9999
Q ss_pred EEcCHH
Q 003068 817 RKMSRE 822 (851)
Q Consensus 817 ~~i~~~ 822 (851)
+.++..
T Consensus 112 ~~~~~~ 117 (131)
T TIGR01575 112 NEIAIR 117 (131)
T ss_pred Cccccc
Confidence 998764
No 27
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=98.63 E-value=2.1e-08 Score=113.74 Aligned_cols=143 Identities=17% Similarity=0.316 Sum_probs=101.1
Q ss_pred ccccccccccC-----CCceeecCCCCCcccccccCCCCCCCCCccccCCCCC--CCCCC---ccc-c------c--ccC
Q 003068 507 GSDDMCHVCGD-----GENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQG--HSSSM---SRS-V------D--LKG 567 (851)
Q Consensus 507 ~~dd~C~vCgd-----gG~Ll~Cd~C~~afH~~Cl~~~~vp~g~W~C~~C~~~--~~~ea---~dp-I------~--l~r 567 (851)
.....|.+|.. +.++..|+.|.++||+.|..+.....+.|.+..|... ...+. +.+ + . -..
T Consensus 81 ~~e~~~nv~~s~~~~p~~e~~~~~r~~~~~~q~~~i~~~~~~~~~~~~~c~~~~~~~~g~a~K~g~~a~~~l~y~~~~l~ 160 (464)
T KOG4323|consen 81 SSELNPNVLTSETVLPENEKVICGRCKSGYHQGCNIPRFPSLDIGESTECVFPIFSQEGGALKKGRLARPSLPYPEASLD 160 (464)
T ss_pred ccccCCcccccccccCchhhhhhhhhccCcccccCccCcCcCCccccccccccccccccccccccccccccccCcccccc
Confidence 44556777764 3478899999999999999998888889999998762 11111 111 1 1 111
Q ss_pred CccCCCCCccccccCCCCcCCCCccCCCceeecCCCCCcccccccCCCCCCCcccCCCCCcEECCCchhHHHHHhhhhcC
Q 003068 568 GLEAPGAEVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIHAALQDFVSN 647 (851)
Q Consensus 568 ~~~~~~~~~~~C~iC~~~~~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~e~P~g~WfCc~~C~~i~~~LqkLv~~ 647 (851)
|...+..+. .|.+|....+ + ....||+|+.|..|||..|+++...+.+...+..+||| ..|.+-...+.++-..
T Consensus 161 wD~~~~~n~-qc~vC~~g~~---~-~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C-~~C~~~~~~~~r~t~~ 234 (464)
T KOG4323|consen 161 WDSGHKVNL-QCSVCYCGGP---G-AGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFC-DVCNRGPKKVPRLTLR 234 (464)
T ss_pred cCccccccc-eeeeeecCCc---C-ccceeeeecccccHHHHHhccCCCCHhhccCccceEee-hhhccchhhccccccc
Confidence 222333333 4888875542 1 24599999999999999999987777788889999999 8998888888888766
Q ss_pred CccccCCC
Q 003068 648 RAQTIPAS 655 (851)
Q Consensus 648 ~~e~lp~~ 655 (851)
.++.+...
T Consensus 235 ~~dv~~la 242 (464)
T KOG4323|consen 235 WADVLHLA 242 (464)
T ss_pred cccccchh
Confidence 55544433
No 28
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=98.62 E-value=2.5e-07 Score=89.36 Aligned_cols=85 Identities=21% Similarity=0.250 Sum_probs=72.1
Q ss_pred CeEEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecc---hhhHHHHHHh
Q 003068 736 GMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPA---AEKAESIWTK 812 (851)
Q Consensus 736 Gfy~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A---~~~A~~~w~~ 812 (851)
+++.+++..++++||.+.++.... .+++-.|+|.++|||+|+|+.|++.+++.++..|+..+.+.+ -..|..+|+
T Consensus 39 ~~~~~~~~~~~~~vG~~~~~~~~~-~~~~~~i~v~~~~rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~- 116 (146)
T PRK09491 39 RYLNLKLTVNGQMAAFAITQVVLD-EATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYE- 116 (146)
T ss_pred CceEEEEEECCeEEEEEEEEeecC-ceEEEEEEECHHHccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHH-
Confidence 555556678899999999876554 466788999999999999999999999999999999988854 467899999
Q ss_pred ccCcEEcCHH
Q 003068 813 KFGFRKMSRE 822 (851)
Q Consensus 813 kfGF~~i~~~ 822 (851)
|+||+..+..
T Consensus 117 k~Gf~~~~~~ 126 (146)
T PRK09491 117 SLGFNEVTIR 126 (146)
T ss_pred HcCCEEeeee
Confidence 9999987753
No 29
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.61 E-value=1.4e-07 Score=108.41 Aligned_cols=84 Identities=18% Similarity=0.335 Sum_probs=73.2
Q ss_pred EEEEeCCEEEEeEEEEEEc-CceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEE
Q 003068 740 VILTVKSVVVSAGLLRIFG-REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRK 818 (851)
Q Consensus 740 ~vl~~~~~~V~aA~lri~g-~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~ 818 (851)
++++.++++||++.+..+. ...++|-.++|+|+|||||+|++||+.+++.+++.|+.++.+.+ ..|..||+ ++||+.
T Consensus 337 ~va~~dg~iVG~~~~~~~~~~~~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~-~~a~~fY~-k~GF~~ 414 (441)
T PRK05279 337 TVIERDGLIIGCAALYPFPEEKMGEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLT-TRTAHWFL-ERGFVP 414 (441)
T ss_pred EEEEECCEEEEEEEEEEcCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEec-chHHHHHH-HCcCEE
Confidence 3557899999999887654 36799999999999999999999999999999999999998765 46899999 999999
Q ss_pred cCHHHHH
Q 003068 819 MSRERLL 825 (851)
Q Consensus 819 i~~~~~~ 825 (851)
++.+++.
T Consensus 415 ~g~~~~~ 421 (441)
T PRK05279 415 VDVDDLP 421 (441)
T ss_pred CChhhCc
Confidence 9985443
No 30
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.60 E-value=1.3e-07 Score=113.25 Aligned_cols=83 Identities=17% Similarity=0.219 Sum_probs=74.5
Q ss_pred EEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEc
Q 003068 740 VILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKM 819 (851)
Q Consensus 740 ~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i 819 (851)
+|++.+|++||.+.+...+.+.++|..++|+|+|||||+|+.||+.+++.+++.|+++|+|.+. +..||+ |+||+..
T Consensus 506 ~Va~~~g~IVG~~~l~~~~~~~~~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak~~g~~~i~l~~~--a~~FYe-k~GF~~~ 582 (614)
T PRK12308 506 AVAEHHGEVTGCASLYIYDSGLAEIRSLGVEAGWQVQGQGSALVQYLVEKARQMAIKKVFVLTR--VPEFFM-KQGFSPT 582 (614)
T ss_pred EEEEECCEEEEEEEEEEcCCCeEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEeeC--cHHHHH-HCCCEEC
Confidence 4567899999999998877778999999999999999999999999999999999999988753 679999 9999999
Q ss_pred CHHHHH
Q 003068 820 SRERLL 825 (851)
Q Consensus 820 ~~~~~~ 825 (851)
+...+.
T Consensus 583 ~~~~~~ 588 (614)
T PRK12308 583 SKSLLP 588 (614)
T ss_pred CcccCC
Confidence 986543
No 31
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=98.58 E-value=1.8e-07 Score=100.54 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=72.8
Q ss_pred CeEEEEEEeCCEEEEeEEEEE-EcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhh---HHHHHH
Q 003068 736 GMYSVILTVKSVVVSAGLLRI-FGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEK---AESIWT 811 (851)
Q Consensus 736 Gfy~~vl~~~~~~V~aA~lri-~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~---A~~~w~ 811 (851)
+.+.++++.+|++||.+.+.+ .+...++|-.++|+|+|||||+|+.||+.+++.++..|++++++.+... |..+|.
T Consensus 157 ~~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~ 236 (266)
T TIGR03827 157 NVVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPEYRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFA 236 (266)
T ss_pred CcEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHH
Confidence 344456678999999999854 3446799999999999999999999999999999999999999887744 567898
Q ss_pred hccCcEEcCHH
Q 003068 812 KKFGFRKMSRE 822 (851)
Q Consensus 812 ~kfGF~~i~~~ 822 (851)
|+||+..+.-
T Consensus 237 -k~GF~~~G~l 246 (266)
T TIGR03827 237 -RLGYAYGGTL 246 (266)
T ss_pred -HcCCccccEE
Confidence 9999987763
No 32
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.58 E-value=2.5e-08 Score=122.52 Aligned_cols=107 Identities=31% Similarity=0.689 Sum_probs=77.5
Q ss_pred CCccccccccccCC-----CceeecCCCCCcccccccCCCCCCCCCccccCCCCCCCCCC--------------------
Q 003068 505 TGGSDDMCHVCGDG-----ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQGHSSSM-------------------- 559 (851)
Q Consensus 505 ~~~~dd~C~vCgdg-----G~Ll~Cd~C~~afH~~Cl~~~~vp~g~W~C~~C~~~~~~ea-------------------- 559 (851)
..+.|..|.||.++ ..+++||+|..++|+.|+|.+-+|+|.|+|+.|....++.+
T Consensus 215 ~~~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~~~v~c~~cp~~~gAFkqt~dgrw 294 (1051)
T KOG0955|consen 215 LLEEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPEGQWLCRRCLQSPQRPVRCLLCPSKGGAFKQTDDGRW 294 (1051)
T ss_pred ccCCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCCCcEeehhhccCcCcccceEeccCCCCcceeccCCce
Confidence 34677899999876 47999999999999999999999999999999977433321
Q ss_pred -------------------cccccccCCccCCCCCccccccCCCCcCCCCccCCCceeecC--CCCCcccccccCCCCCC
Q 003068 560 -------------------SRSVDLKGGLEAPGAEVGGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRKNGLC 618 (851)
Q Consensus 560 -------------------~dpI~l~r~~~~~~~~~~~C~iC~~~~~~~~~~d~~~LL~Cd--qC~r~fHv~CL~~~g~~ 618 (851)
.+||..++....--. ...|++|+..+ .+..++|. .|-.+||+.|.+..|+.
T Consensus 295 ~Hv~caiwipev~F~nt~~~E~I~~i~~i~~aRw-kL~cy~cK~~~-------~gaciqcs~~~c~~a~hvtca~~agl~ 366 (1051)
T KOG0955|consen 295 AHVVCAIWIPEVSFANTVFLEPIDSIENIPPARW-KLTCYICKQKG-------LGACIQCSKANCYTAFHVTCARRAGLY 366 (1051)
T ss_pred eeeehhhcccccccccchhhccccchhcCcHhhh-hceeeeeccCC-------CCcceecchhhhhhhhhhhhHhhcCce
Confidence 112211111100001 14799999753 47888897 78899999999887764
Q ss_pred C
Q 003068 619 D 619 (851)
Q Consensus 619 ~ 619 (851)
+
T Consensus 367 m 367 (1051)
T KOG0955|consen 367 M 367 (1051)
T ss_pred E
Confidence 4
No 33
>PRK13688 hypothetical protein; Provisional
Probab=98.56 E-value=2.4e-07 Score=92.59 Aligned_cols=76 Identities=18% Similarity=0.243 Sum_probs=61.0
Q ss_pred EEEeCCEEEEeEEEEEE----------cCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHH
Q 003068 741 ILTVKSVVVSAGLLRIF----------GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIW 810 (851)
Q Consensus 741 vl~~~~~~V~aA~lri~----------g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w 810 (851)
+++.++++||++.+... ..+.++|-.|||+++|||||+|++||+.+++ .++. +.+.+...|..||
T Consensus 49 ~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~~----~~~~-~~~~~~~~a~~FY 123 (156)
T PRK13688 49 GIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAKS----FQLP-IKTIARNKSKDFW 123 (156)
T ss_pred EEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHHH----hCCe-EEEEeccchHHHH
Confidence 45788999999887542 2467899999999999999999999986554 3444 4455777899999
Q ss_pred HhccCcEEcCHH
Q 003068 811 TKKFGFRKMSRE 822 (851)
Q Consensus 811 ~~kfGF~~i~~~ 822 (851)
+ |+||+.++..
T Consensus 124 ~-k~GF~~~~~~ 134 (156)
T PRK13688 124 L-KLGFTPVEYK 134 (156)
T ss_pred H-hCCCEEeEEe
Confidence 9 9999998765
No 34
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=98.52 E-value=5.1e-07 Score=87.68 Aligned_cols=84 Identities=17% Similarity=0.288 Sum_probs=69.7
Q ss_pred eEEEEEEeCCEEEEeEEEEEEc----CceEEEeEeEeeccccccChhHHHHHHHHHHHhh-CCccEEEecch---hhHHH
Q 003068 737 MYSVILTVKSVVVSAGLLRIFG----REVAELPLVATCREYQGKGCFQALFSCIERLLCS-LNVENLVLPAA---EKAES 808 (851)
Q Consensus 737 fy~~vl~~~~~~V~aA~lri~g----~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~-lgV~~LvL~A~---~~A~~ 808 (851)
.+.+++..++++||.+.+.... ...+++. ++|.++|||||+|+.||+.+++.+.. +|+.++.+... ..|+.
T Consensus 51 ~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~-~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~ 129 (162)
T PRK10140 51 IKQLVACIDGDVVGHLTIDVQQRPRRSHVADFG-ICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIK 129 (162)
T ss_pred cEEEEEEECCEEEEEEEEecccccccceEEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHH
Confidence 4556777899999999987532 2356654 89999999999999999999999988 79888877654 68899
Q ss_pred HHHhccCcEEcCHH
Q 003068 809 IWTKKFGFRKMSRE 822 (851)
Q Consensus 809 ~w~~kfGF~~i~~~ 822 (851)
+|+ |+||+..+..
T Consensus 130 ~y~-k~GF~~~g~~ 142 (162)
T PRK10140 130 VYK-KYGFEIEGTG 142 (162)
T ss_pred HHH-HCCCEEEeec
Confidence 999 9999998874
No 35
>PRK09831 putative acyltransferase; Provisional
Probab=98.50 E-value=3.1e-07 Score=89.33 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=62.3
Q ss_pred EEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEc
Q 003068 740 VILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKM 819 (851)
Q Consensus 740 ~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i 819 (851)
+|+..+|++||.+.+.. ..+..++|.|+|||||+|++||..+++.+.. |.+.+...|..||+ |+||+.+
T Consensus 56 ~v~~~~~~iiG~~~~~~-----~~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-----l~v~~~~~a~~~Y~-k~Gf~~~ 124 (147)
T PRK09831 56 RVAVINAQPVGFITCIE-----HYIDMLFVDPEYTRRGVASALLKPLIKSESE-----LTVDASITAKPFFE-RYGFQTV 124 (147)
T ss_pred EEEEECCEEEEEEEehh-----ceeeeEEECHHHcCCCHHHHHHHHHHHHhhh-----eEeecchhhHHHHH-HCCCEEe
Confidence 34578899999988742 4678899999999999999999999999876 55566788999999 9999999
Q ss_pred CHHH
Q 003068 820 SRER 823 (851)
Q Consensus 820 ~~~~ 823 (851)
+...
T Consensus 125 g~~~ 128 (147)
T PRK09831 125 KQQR 128 (147)
T ss_pred eccc
Confidence 9865
No 36
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=98.49 E-value=6.2e-07 Score=89.06 Aligned_cols=84 Identities=19% Similarity=0.202 Sum_probs=68.6
Q ss_pred EEEEEeCCE-EEEeEEEEEE---cCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHHHH
Q 003068 739 SVILTVKSV-VVSAGLLRIF---GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESIWT 811 (851)
Q Consensus 739 ~~vl~~~~~-~V~aA~lri~---g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~---~~A~~~w~ 811 (851)
+++..+++. .|||+.-... +..-++|-.+||+++|||||+|++|+..+.+.++..|+..++|.+- ..|..+|+
T Consensus 58 ~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~ 137 (165)
T KOG3139|consen 58 CFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYE 137 (165)
T ss_pred EEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHH
Confidence 444333322 5777666542 2345899999999999999999999999999999999999999987 68999999
Q ss_pred hccCcEEcCHHH
Q 003068 812 KKFGFRKMSRER 823 (851)
Q Consensus 812 ~kfGF~~i~~~~ 823 (851)
+|||.+.....
T Consensus 138 -sLGF~r~~r~~ 148 (165)
T KOG3139|consen 138 -SLGFKRDKRLF 148 (165)
T ss_pred -hcCceEeccee
Confidence 99999987753
No 37
>PHA00673 acetyltransferase domain containing protein
Probab=98.43 E-value=1.3e-06 Score=87.07 Aligned_cols=85 Identities=15% Similarity=0.143 Sum_probs=74.0
Q ss_pred CeEEEEEEeCCEEEEeEEEEEE------cCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchh--hHH
Q 003068 736 GMYSVILTVKSVVVSAGLLRIF------GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAE--KAE 807 (851)
Q Consensus 736 Gfy~~vl~~~~~~V~aA~lri~------g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~--~A~ 807 (851)
+-..+|.+++|++||++.+.+. +...+.|.-|.|++++||||+|++||..+|+.|++.|...|.+.|.+ -.+
T Consensus 54 ~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv 133 (154)
T PHA00673 54 VAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLV 133 (154)
T ss_pred CcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccch
Confidence 3445566789999999999775 24567899999999999999999999999999999999999999996 578
Q ss_pred HHHHhccCcEEcCH
Q 003068 808 SIWTKKFGFRKMSR 821 (851)
Q Consensus 808 ~~w~~kfGF~~i~~ 821 (851)
.||. +.|++....
T Consensus 134 ~fy~-~~g~~~~~~ 146 (154)
T PHA00673 134 QLLP-AAGYRETNR 146 (154)
T ss_pred HHHH-hCCchhhch
Confidence 9999 999987654
No 38
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.39 E-value=1.1e-07 Score=110.32 Aligned_cols=88 Identities=31% Similarity=0.933 Sum_probs=73.7
Q ss_pred cccccccccCC-----CceeecCCCCCcccccccCCC---CCCCCCccccCCCCCCCCCCcccccccCCccCCCCCcccc
Q 003068 508 SDDMCHVCGDG-----ENLLLCNGCPLAFHAACLDPL---LIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAPGAEVGGC 579 (851)
Q Consensus 508 ~dd~C~vCgdg-----G~Ll~Cd~C~~afH~~Cl~~~---~vp~g~W~C~~C~~~~~~ea~dpI~l~r~~~~~~~~~~~C 579 (851)
...+|.+|+.. |.|+.|..|...||.+|+... .+-.+.|.|+.|+ .|
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~cr-------------------------vC 71 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCR-------------------------VC 71 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCce-------------------------ee
Confidence 34678888754 579999999999999999852 2234569999996 78
Q ss_pred ccCCCCcCCCCccCCCceeecCCCCCcccccccCCCCCCCcccCCCCCcEE
Q 003068 580 VICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFC 630 (851)
Q Consensus 580 ~iC~~~~~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~e~P~g~WfC 630 (851)
..|+..+ +...++.|+.|+-.||.+|..| .+..++.+.|+|
T Consensus 72 e~c~~~g------D~~kf~~Ck~cDvsyh~yc~~P----~~~~v~sg~~~c 112 (694)
T KOG4443|consen 72 EACGTTG------DPKKFLLCKRCDVSYHCYCQKP----PNDKVPSGPWLC 112 (694)
T ss_pred eeccccC------CcccccccccccccccccccCC----ccccccCccccc
Confidence 8998543 6888999999999999999987 688999999999
No 39
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=98.37 E-value=1.3e-06 Score=86.60 Aligned_cols=83 Identities=14% Similarity=0.101 Sum_probs=67.4
Q ss_pred EEEEEE-eCCEEEEeEEEEE--EcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHHHH
Q 003068 738 YSVILT-VKSVVVSAGLLRI--FGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESIWT 811 (851)
Q Consensus 738 y~~vl~-~~~~~V~aA~lri--~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~---~~A~~~w~ 811 (851)
+++|.+ .++++||.+.+.. ...+.+.+-.+||+++|||||+|++|++.+++.++..++.+|.+... ..|..+|+
T Consensus 40 ~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~ 119 (157)
T TIGR02406 40 TSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARGKGLARRLLEALLERVACERVRHLETTITPDNQASRALFK 119 (157)
T ss_pred cEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhccCcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHH
Confidence 445556 4689999876533 33457889999999999999999999999999999999988876543 68889999
Q ss_pred hccCcEEcCH
Q 003068 812 KKFGFRKMSR 821 (851)
Q Consensus 812 ~kfGF~~i~~ 821 (851)
|+||+....
T Consensus 120 -k~G~~~~~~ 128 (157)
T TIGR02406 120 -ALARRRGVH 128 (157)
T ss_pred -HhCcccCCC
Confidence 999987444
No 40
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.36 E-value=1.2e-06 Score=84.77 Aligned_cols=84 Identities=23% Similarity=0.296 Sum_probs=75.2
Q ss_pred eEEEEEEe--CCEEEEeEEEEEE-----cC-ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHH
Q 003068 737 MYSVILTV--KSVVVSAGLLRIF-----GR-EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAES 808 (851)
Q Consensus 737 fy~~vl~~--~~~~V~aA~lri~-----g~-~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~ 808 (851)
+|.+|+++ .+++||+|+|.|- +- .-.+|.=|+|+++||||++|+.|++.+-.+++++|+=.+.|.-.++..+
T Consensus 53 Y~i~Vied~~s~~vigtatL~IE~KfIh~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~ 132 (150)
T KOG3396|consen 53 YYIVVIEDKESEKVIGTATLFIERKFIHGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVK 132 (150)
T ss_pred EEEEEEEeCCcCeEEEEEEEEEehhhhhcccccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhh
Confidence 78888885 4899999999763 32 2467999999999999999999999999999999999999999999999
Q ss_pred HHHhccCcEEcCH
Q 003068 809 IWTKKFGFRKMSR 821 (851)
Q Consensus 809 ~w~~kfGF~~i~~ 821 (851)
||+ ||||+..+.
T Consensus 133 FYe-KcG~s~~~~ 144 (150)
T KOG3396|consen 133 FYE-KCGYSNAGN 144 (150)
T ss_pred HHH-HcCccccch
Confidence 999 999998773
No 41
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=98.34 E-value=3.1e-06 Score=82.00 Aligned_cols=83 Identities=22% Similarity=0.321 Sum_probs=68.7
Q ss_pred eEEEEEEe-CCEEEEeEEEEEEcC--ceEEEeEeEeeccccccChhHHHHHHHHHHH-hhCCccEEEecch---hhHHHH
Q 003068 737 MYSVILTV-KSVVVSAGLLRIFGR--EVAELPLVATCREYQGKGCFQALFSCIERLL-CSLNVENLVLPAA---EKAESI 809 (851)
Q Consensus 737 fy~~vl~~-~~~~V~aA~lri~g~--~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l-~~lgV~~LvL~A~---~~A~~~ 809 (851)
.+.+++.. +|++||.+.++.... ..+++- +.+.++||++|+|+.|+..|++.| ..+|+++|.+... ..|+.|
T Consensus 50 ~~~~~v~~~~g~iiG~~~~~~~~~~~~~~~~~-~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~ 128 (155)
T PF13420_consen 50 QRLFLVAEEDGKIIGYVSLRDIDPYNHTAELS-IYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINF 128 (155)
T ss_dssp TEEEEEEECTTEEEEEEEEEESSSGTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHH
T ss_pred CcEEEEEEcCCcEEEEEEEEeeeccCCEEEEe-eEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHH
Confidence 44445555 999999999987553 578887 555699999999999999999999 9999999876444 789999
Q ss_pred HHhccCcEEcCH
Q 003068 810 WTKKFGFRKMSR 821 (851)
Q Consensus 810 w~~kfGF~~i~~ 821 (851)
|+ ++||+..+.
T Consensus 129 ~~-~~GF~~~g~ 139 (155)
T PF13420_consen 129 YK-KLGFEEEGE 139 (155)
T ss_dssp HH-HTTEEEEEE
T ss_pred HH-hCCCEEEEE
Confidence 99 999999876
No 42
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.33 E-value=4.5e-07 Score=105.21 Aligned_cols=45 Identities=40% Similarity=1.181 Sum_probs=41.1
Q ss_pred ccccccccCCCce---eecCCCCCcccccccCCC----CCCCCCccccCCCC
Q 003068 509 DDMCHVCGDGENL---LLCNGCPLAFHAACLDPL----LIPESGWRCPNCRQ 553 (851)
Q Consensus 509 dd~C~vCgdgG~L---l~Cd~C~~afH~~Cl~~~----~vp~g~W~C~~C~~ 553 (851)
.++|..|+..|.. ++||+||++||+.||.|+ .+|.|.|+|+.|..
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~ 304 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKI 304 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCee
Confidence 5699999998866 999999999999999985 68999999999976
No 43
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.30 E-value=4.2e-07 Score=105.45 Aligned_cols=50 Identities=34% Similarity=0.932 Sum_probs=41.6
Q ss_pred ccccCCCCcCCCCccCCCceeecCCCCCcccccccCCCCCCCcccCCCCCcEECCCchh
Q 003068 578 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 636 (851)
Q Consensus 578 ~C~iC~~~~~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~e~P~g~WfCc~~C~~ 636 (851)
+|..|++.+ .| ..+|+||.|++.||+.||.|. ...+.+|.|.||| ..|..
T Consensus 255 fCsaCn~~~----~F--~~~i~CD~Cp~sFH~~CLePP--l~~eniP~g~W~C-~ec~~ 304 (613)
T KOG4299|consen 255 FCSACNGSG----LF--NDIICCDGCPRSFHQTCLEPP--LEPENIPPGSWFC-PECKI 304 (613)
T ss_pred HHHHhCCcc----cc--ccceeecCCchHHHHhhcCCC--CCcccCCCCcccc-CCCee
Confidence 799999875 34 678999999999999999973 2367899999999 78853
No 44
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=98.30 E-value=2.9e-06 Score=83.79 Aligned_cols=76 Identities=28% Similarity=0.372 Sum_probs=64.5
Q ss_pred EEEEeEEEEE-EcC----ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCc-cEEEecch---hhHHHHHHhccCcE
Q 003068 747 VVVSAGLLRI-FGR----EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNV-ENLVLPAA---EKAESIWTKKFGFR 817 (851)
Q Consensus 747 ~~V~aA~lri-~g~----~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV-~~LvL~A~---~~A~~~w~~kfGF~ 817 (851)
+++|....++ .+. ..++|-.+||+|+|||+|+|++|++.+++.+...+. +.++|... ..|+.+|+ ++||+
T Consensus 72 ~~~G~~~~~~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~-~~GF~ 150 (177)
T COG0456 72 KVVGFLLVRVVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYR-KLGFE 150 (177)
T ss_pred ceeEEEEEEEecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHH-HcCCE
Confidence 4677777653 332 278999999999999999999999999999999997 88888877 57999999 99999
Q ss_pred EcCHHH
Q 003068 818 KMSRER 823 (851)
Q Consensus 818 ~i~~~~ 823 (851)
.+....
T Consensus 151 ~~~~~~ 156 (177)
T COG0456 151 VVKIRK 156 (177)
T ss_pred EEeeeh
Confidence 988754
No 45
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.30 E-value=2.4e-06 Score=92.03 Aligned_cols=76 Identities=18% Similarity=0.173 Sum_probs=65.1
Q ss_pred CCEEEEeEEEEEEc--CceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHHHHhccCcEEc
Q 003068 745 KSVVVSAGLLRIFG--REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESIWTKKFGFRKM 819 (851)
Q Consensus 745 ~~~~V~aA~lri~g--~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~---~~A~~~w~~kfGF~~i 819 (851)
++++||.+.+++.. .++++|-.++|+++|||||+|++||..+++.++..|+..+.+... ..|..||+ |+||+..
T Consensus 208 ~~~~vG~~~~~~~~~~~~~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~-k~GF~~~ 286 (292)
T TIGR03448 208 PGELLGFHWTKVHPDEPALGEVYVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYE-KLGFTVA 286 (292)
T ss_pred CCcEEEEEEEEecCCCCceeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHH-HcCCEEc
Confidence 68999987666543 246888889999999999999999999999999999999887664 47999999 9999986
Q ss_pred CH
Q 003068 820 SR 821 (851)
Q Consensus 820 ~~ 821 (851)
+.
T Consensus 287 ~~ 288 (292)
T TIGR03448 287 EV 288 (292)
T ss_pred cc
Confidence 54
No 46
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=98.29 E-value=2.9e-06 Score=91.36 Aligned_cols=81 Identities=9% Similarity=0.005 Sum_probs=65.5
Q ss_pred EEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch-hhHHHHHHhccCc
Q 003068 738 YSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA-EKAESIWTKKFGF 816 (851)
Q Consensus 738 y~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~-~~A~~~w~~kfGF 816 (851)
+.+|.+.++++||.+.+.......+++-.++|+|+|||||+|++||+.+++.+. +.-.|.+... ..|+.||+ ++||
T Consensus 47 ~~~~~~~~~~~vG~~~~~~~~~~~~~~~~l~V~p~~rg~GiG~~Ll~~~~~~~~--~~~~~~~~~~n~~a~~fy~-~~Gf 123 (292)
T TIGR03448 47 RHLVAVDSDPIVGYANLVPARGTDPAMAELVVHPAHRRRGIGRALIRALLAKGG--GRLRVWAHGDLPAARALAS-RLGL 123 (292)
T ss_pred eEEEEEECCEEEEEEEEEcCCCCcceEEEEEECHhhcCCCHHHHHHHHHHHhcc--CceEEEEcCCCHHHHHHHH-HCCC
Confidence 455667889999999988765555788899999999999999999999999875 2234444443 67999999 9999
Q ss_pred EEcCH
Q 003068 817 RKMSR 821 (851)
Q Consensus 817 ~~i~~ 821 (851)
+.+..
T Consensus 124 ~~~~~ 128 (292)
T TIGR03448 124 VPTRE 128 (292)
T ss_pred EEccE
Confidence 98865
No 47
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=98.28 E-value=3.1e-06 Score=76.27 Aligned_cols=77 Identities=21% Similarity=0.251 Sum_probs=59.4
Q ss_pred EeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEe--cchhhHHHHHHhccCcEEcC
Q 003068 743 TVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL--PAAEKAESIWTKKFGFRKMS 820 (851)
Q Consensus 743 ~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL--~A~~~A~~~w~~kfGF~~i~ 820 (851)
..+++.++.+...+..+. ++|-.|.|.|+|||+|||+.|+.+|.+.+.+.|..-+.. ..-..|+.+|+ |+||+.+.
T Consensus 4 ~f~~~~~~l~~~~~~~~~-g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~~l~v~~~N~~s~~ly~-klGf~~~~ 81 (86)
T PF08445_consen 4 VFDGELVALVAWIIRSDD-GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTPFLYVDADNEASIRLYE-KLGFREIE 81 (86)
T ss_dssp EECTCCEEEEEEEEESCT-CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEEEEEEETT-HHHHHHHH-HCT-EEEE
T ss_pred EEECCccceeeEeeeCCC-cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHH-HcCCEEEE
Confidence 344566777776666666 999999999999999999999999999998888775332 23357899999 99999875
Q ss_pred H
Q 003068 821 R 821 (851)
Q Consensus 821 ~ 821 (851)
+
T Consensus 82 ~ 82 (86)
T PF08445_consen 82 E 82 (86)
T ss_dssp E
T ss_pred E
Confidence 3
No 48
>PHA01807 hypothetical protein
Probab=98.28 E-value=2.1e-06 Score=85.60 Aligned_cols=83 Identities=10% Similarity=0.106 Sum_probs=65.7
Q ss_pred eEEEEEEeCCEEEEeEEEEEEcC----ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch---hhHHHH
Q 003068 737 MYSVILTVKSVVVSAGLLRIFGR----EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA---EKAESI 809 (851)
Q Consensus 737 fy~~vl~~~~~~V~aA~lri~g~----~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~---~~A~~~ 809 (851)
-+.++++.++++||.+.+..... .+.+|..|.|+|+|||+|+|++||+.+++.++..|+..|.|... ..|..+
T Consensus 53 ~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~ 132 (153)
T PHA01807 53 RTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQWQYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIH 132 (153)
T ss_pred ceEEEEEECCEEEEEEEEEcCCCcceeeeccceeEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHH
Confidence 34466778999999999865432 23445668999999999999999999999999999999988777 567899
Q ss_pred HHhccCcEEcCHH
Q 003068 810 WTKKFGFRKMSRE 822 (851)
Q Consensus 810 w~~kfGF~~i~~~ 822 (851)
|+ .|++.+.+
T Consensus 133 y~---~~~~~~~~ 142 (153)
T PHA01807 133 YR---RVKPYGQE 142 (153)
T ss_pred HH---hcCccCCc
Confidence 99 44555443
No 49
>PRK10514 putative acetyltransferase; Provisional
Probab=98.28 E-value=2.7e-06 Score=81.70 Aligned_cols=86 Identities=19% Similarity=0.174 Sum_probs=64.1
Q ss_pred EeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEcCHH
Q 003068 743 TVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMSRE 822 (851)
Q Consensus 743 ~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i~~~ 822 (851)
..++++||.+.+.. .++..++|.++|||||+|++||+.+++.+.. +...+...-..|..||+ |+||+..+..
T Consensus 56 ~~~~~~iG~~~~~~-----~~~~~~~v~p~~rgkGig~~Ll~~~~~~~~~--i~~~v~~~N~~a~~~ye-k~Gf~~~~~~ 127 (145)
T PRK10514 56 DERDQPVGFMLLSG-----GHMEALFVDPDVRGCGVGRMLVEHALSLHPE--LTTDVNEQNEQAVGFYK-KMGFKVTGRS 127 (145)
T ss_pred ecCCcEEEEEEEec-----CcEeEEEECHHhccCCHHHHHHHHHHHhccc--cEEEeecCCHHHHHHHH-HCCCEEeccc
Confidence 46789999888742 3466899999999999999999999997643 34444455578999999 9999998876
Q ss_pred HHHhhhccceeeee
Q 003068 823 RLLKYQRDFQLTIF 836 (851)
Q Consensus 823 ~~~~~~~~~~l~~F 836 (851)
.....-..++++.|
T Consensus 128 ~~~~~~~~~~~~~~ 141 (145)
T PRK10514 128 EVDDQGRPYPLLHL 141 (145)
T ss_pred ccCCCCCccceEEE
Confidence 54433233444444
No 50
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.25 E-value=3.5e-06 Score=99.64 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=68.9
Q ss_pred CeEEEEEEe--CCEEEEeEEEEEE------cCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecc---hh
Q 003068 736 GMYSVILTV--KSVVVSAGLLRIF------GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPA---AE 804 (851)
Q Consensus 736 Gfy~~vl~~--~~~~V~aA~lri~------g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A---~~ 804 (851)
+.+.+|.+. +|++||.+.+..+ ....++|-.|+|+++|||||+|++||..+++.+++.|+.++.|.. -.
T Consensus 122 ~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~ 201 (547)
T TIGR03103 122 AITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNE 201 (547)
T ss_pred CceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCH
Confidence 445555554 6999999975322 122478899999999999999999999999999999999987654 47
Q ss_pred hHHHHHHhccCcEEcCH
Q 003068 805 KAESIWTKKFGFRKMSR 821 (851)
Q Consensus 805 ~A~~~w~~kfGF~~i~~ 821 (851)
.|..||+ |+||+.++.
T Consensus 202 ~Ai~fY~-klGf~~~~~ 217 (547)
T TIGR03103 202 QAIALYE-KLGFRRIPV 217 (547)
T ss_pred HHHHHHH-HCCCEEeeE
Confidence 8999999 999998754
No 51
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=98.21 E-value=9.5e-06 Score=78.89 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=71.7
Q ss_pred cCeEEEEEEeCCEEEEeEEEEE------EcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhC-CccEEEecch---h
Q 003068 735 GGMYSVILTVKSVVVSAGLLRI------FGREVAELPLVATCREYQGKGCFQALFSCIERLLCSL-NVENLVLPAA---E 804 (851)
Q Consensus 735 ~Gfy~~vl~~~~~~V~aA~lri------~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~l-gV~~LvL~A~---~ 804 (851)
.+.+.+|++.+|++||-+.+.- .....+.+-.+++.+++||||+|+.+|.++++.+... ++++|++... .
T Consensus 46 ~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~ 125 (152)
T PF13523_consen 46 PGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNT 125 (152)
T ss_dssp TTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEEEEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-H
T ss_pred CCceEEEEEECCEEEEEEEEecccccccCCCCEEEEeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCH
Confidence 5678888999999999987732 1455778999999999999999999999999998876 8999999887 4
Q ss_pred hHHHHHHhccCcEEcCHHH
Q 003068 805 KAESIWTKKFGFRKMSRER 823 (851)
Q Consensus 805 ~A~~~w~~kfGF~~i~~~~ 823 (851)
-|+.+|+ |+||+.+++-+
T Consensus 126 ~~~~~~~-k~GF~~~g~~~ 143 (152)
T PF13523_consen 126 RAIRLYE-KAGFRKVGEFE 143 (152)
T ss_dssp HHHHHHH-HTT-EEEEEEE
T ss_pred HHHHHHH-HcCCEEeeEEE
Confidence 8899999 99999988653
No 52
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=98.19 E-value=3.7e-07 Score=106.62 Aligned_cols=123 Identities=28% Similarity=0.616 Sum_probs=82.6
Q ss_pred ccccccccccCC-----CceeecCCCCCcccccccCCCCCCCCCccccCCCCCCC-----C----CCcccc---------
Q 003068 507 GSDDMCHVCGDG-----ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQGHS-----S----SMSRSV--------- 563 (851)
Q Consensus 507 ~~dd~C~vCgdg-----G~Ll~Cd~C~~afH~~Cl~~~~vp~g~W~C~~C~~~~~-----~----ea~dpI--------- 563 (851)
+++-.|.+|..+ .+|++||.|.-..|+.|+|+..+|+|.|.|..|..+.. + +++.|.
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT~wAHv 348 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGTKWAHV 348 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccCCCCeeeccccCCcccccCCCCeeeEe
Confidence 577889999854 59999999999999999999999999999999976321 1 122221
Q ss_pred ------------------cccCCccCCCCCc-cccccCCCCcCCCCccCCCceeecC--CCCCcccccccCCCCCCC---
Q 003068 564 ------------------DLKGGLEAPGAEV-GGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRKNGLCD--- 619 (851)
Q Consensus 564 ------------------~l~r~~~~~~~~~-~~C~iC~~~~~~~~~~d~~~LL~Cd--qC~r~fHv~CL~~~g~~~--- 619 (851)
+.+.....++... ..|.+|+.. .+..|+|. .|.-.||+.|...+|+..
T Consensus 349 sCALwIPEVsie~~ekmePItkfs~IpesRwslvC~LCk~k--------~GACIqCs~k~C~t~fHv~CA~~aG~~~~~~ 420 (893)
T KOG0954|consen 349 SCALWIPEVSIECPEKMEPITKFSHIPESRWSLVCNLCKVK--------SGACIQCSNKTCRTAFHVTCAFEAGLEMKTI 420 (893)
T ss_pred eeeeccceeeccCHhhcCcccccCCCcHHHHHHHHHHhccc--------CcceEEecccchhhhccchhhhhcCCeeeee
Confidence 0000111111111 369999853 57788887 899999999999888743
Q ss_pred cccCC--CCCcEECCCchhHH
Q 003068 620 LKEIP--KDKWFCCDDCNRIH 638 (851)
Q Consensus 620 L~e~P--~g~WfCc~~C~~i~ 638 (851)
+.+.. +..-|| ..|..+.
T Consensus 421 ~~~~D~v~~~s~c-~khs~~~ 440 (893)
T KOG0954|consen 421 LKENDEVKFKSYC-SKHSDHR 440 (893)
T ss_pred eccCCchhheeec-ccccccc
Confidence 11111 123477 5555554
No 53
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.17 E-value=4.9e-07 Score=107.78 Aligned_cols=49 Identities=39% Similarity=1.002 Sum_probs=42.5
Q ss_pred CccccccccccCCCceeecCCCCCcccccccCCC--CCCCCCccccCCCCC
Q 003068 506 GGSDDMCHVCGDGENLLLCNGCPLAFHAACLDPL--LIPESGWRCPNCRQG 554 (851)
Q Consensus 506 ~~~dd~C~vCgdgG~Ll~Cd~C~~afH~~Cl~~~--~vp~g~W~C~~C~~~ 554 (851)
..+...|.+|+++|++++|+.|+.+||..|++++ ..|.+.|.|++|...
T Consensus 44 ~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p 94 (696)
T KOG0383|consen 44 DAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCP 94 (696)
T ss_pred hhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccC
Confidence 3466889999999999999999999999999975 566778999999543
No 54
>PRK10562 putative acetyltransferase; Provisional
Probab=98.16 E-value=6.5e-06 Score=79.65 Aligned_cols=77 Identities=12% Similarity=0.093 Sum_probs=59.8
Q ss_pred EEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEE
Q 003068 739 SVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRK 818 (851)
Q Consensus 739 ~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~ 818 (851)
.+|+..++++||.+.+... ..+-.++|.++|||+|||++||+.+++.+..+.+ .+...-..|..||+ |+||+.
T Consensus 50 ~~v~~~~~~~iG~~~~~~~----~~i~~~~v~~~~rg~G~g~~ll~~~~~~~~~~~~--~v~~~N~~s~~~y~-k~Gf~~ 122 (145)
T PRK10562 50 TWVWEEDGKLLGFVSVLEG----RFVGALFVAPKAVRRGIGKALMQHVQQRYPHLSL--EVYQKNQRAVNFYH-AQGFRI 122 (145)
T ss_pred EEEEEECCEEEEEEEEeec----cEEEEEEECHHHcCCCHHHHHHHHHHhhCCeEEE--EEEcCChHHHHHHH-HCCCEE
Confidence 3455678999999987432 3577899999999999999999999997654322 23344568899999 999999
Q ss_pred cCHH
Q 003068 819 MSRE 822 (851)
Q Consensus 819 i~~~ 822 (851)
++..
T Consensus 123 ~~~~ 126 (145)
T PRK10562 123 VDSA 126 (145)
T ss_pred cccc
Confidence 9864
No 55
>PRK01346 hypothetical protein; Provisional
Probab=98.16 E-value=6.7e-06 Score=93.38 Aligned_cols=81 Identities=19% Similarity=0.166 Sum_probs=69.4
Q ss_pred EEEEEeCCEEEEeEEEEEE------cC--ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHH
Q 003068 739 SVILTVKSVVVSAGLLRIF------GR--EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIW 810 (851)
Q Consensus 739 ~~vl~~~~~~V~aA~lri~------g~--~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w 810 (851)
.+++++++++||.+.+..+ +. ..+.|-.|||.|+|||||+|++||..+++.+++.|+..++|.+.. ..||
T Consensus 49 ~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~~~--~~~Y 126 (411)
T PRK01346 49 TLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTASE--GGIY 126 (411)
T ss_pred eEEEEECCEEEEEEEEeccccccCCCCccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEECCc--hhhH
Confidence 4566789999999997543 22 468899999999999999999999999999999999998888765 4799
Q ss_pred HhccCcEEcCHH
Q 003068 811 TKKFGFRKMSRE 822 (851)
Q Consensus 811 ~~kfGF~~i~~~ 822 (851)
. +|||......
T Consensus 127 ~-r~Gf~~~~~~ 137 (411)
T PRK01346 127 G-RFGYGPATYS 137 (411)
T ss_pred h-hCCCeeccce
Confidence 9 9999988764
No 56
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=98.13 E-value=1.3e-05 Score=80.55 Aligned_cols=83 Identities=24% Similarity=0.210 Sum_probs=68.6
Q ss_pred EEEEEEeCCEEEEeEEEEEEc--CceEEEeEeEeeccccccChhHHHHHHHHHHHh-hCCccEEEecch---hhHHHHHH
Q 003068 738 YSVILTVKSVVVSAGLLRIFG--REVAELPLVATCREYQGKGCFQALFSCIERLLC-SLNVENLVLPAA---EKAESIWT 811 (851)
Q Consensus 738 y~~vl~~~~~~V~aA~lri~g--~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~-~lgV~~LvL~A~---~~A~~~w~ 811 (851)
+.++++.+|++||.+.+.... ...+++ .+++.++|||+|+|+.|+..+.+.+. .+|+++|++... ..|..+|+
T Consensus 58 ~~~~i~~~g~~iG~~~~~~~~~~~~~~~~-~~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~ye 136 (186)
T PRK15130 58 RRFVVECDGEKAGLVELVEINHVHRRAEF-QIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYR 136 (186)
T ss_pred cEEEEEECCEEEEEEEEEeecCCCCeEEE-EEEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHH
Confidence 345667899999999986653 345777 48999999999999999999999876 689999988754 57899999
Q ss_pred hccCcEEcCHH
Q 003068 812 KKFGFRKMSRE 822 (851)
Q Consensus 812 ~kfGF~~i~~~ 822 (851)
|+||+..+.-
T Consensus 137 -k~GF~~~~~~ 146 (186)
T PRK15130 137 -KLGFEVEGEL 146 (186)
T ss_pred -HCCCEEEEEE
Confidence 9999998763
No 57
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.12 E-value=1.2e-05 Score=63.63 Aligned_cols=61 Identities=25% Similarity=0.230 Sum_probs=55.0
Q ss_pred EEEEeCCEEEEeEEEEEEc--CceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEe
Q 003068 740 VILTVKSVVVSAGLLRIFG--REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 800 (851)
Q Consensus 740 ~vl~~~~~~V~aA~lri~g--~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL 800 (851)
++++.++++||.+.+.... ...+++-.++|+++|||+|+|+.|+..+.+.+...|++++.+
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 3556789999999998765 478999999999999999999999999999999999999886
No 58
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.10 E-value=9e-06 Score=95.43 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=64.9
Q ss_pred CCEEEEeEEEEEEcCceE-----------EEeEeEe--------eccccccChhHHHHHHHHHHHhhCCccEEEecchhh
Q 003068 745 KSVVVSAGLLRIFGREVA-----------ELPLVAT--------CREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEK 805 (851)
Q Consensus 745 ~~~~V~aA~lri~g~~~A-----------Elp~vAt--------~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~ 805 (851)
++.+||-.+||...++.. ||-..++ .++|||+|+|++||+++|+.|++.|++.|.|.+...
T Consensus 422 ~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~~~ 501 (522)
T TIGR01211 422 NDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISGIG 501 (522)
T ss_pred CCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeCch
Confidence 678999999987654322 5554444 589999999999999999999999999999999999
Q ss_pred HHHHHHhccCcEEcCH
Q 003068 806 AESIWTKKFGFRKMSR 821 (851)
Q Consensus 806 A~~~w~~kfGF~~i~~ 821 (851)
|..||. |+||...++
T Consensus 502 A~~FY~-klGf~~~g~ 516 (522)
T TIGR01211 502 VREYYR-KLGYELDGP 516 (522)
T ss_pred HHHHHH-HCCCEEEcc
Confidence 999999 999998765
No 59
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=98.06 E-value=2.7e-05 Score=75.35 Aligned_cols=81 Identities=19% Similarity=0.140 Sum_probs=67.1
Q ss_pred EEEEeCCEEEEeEEEEEEc--CceEEEeEeEeeccccccChhHHHHHHHHHHHh-hCCccEEEec---chhhHHHHHHhc
Q 003068 740 VILTVKSVVVSAGLLRIFG--REVAELPLVATCREYQGKGCFQALFSCIERLLC-SLNVENLVLP---AAEKAESIWTKK 813 (851)
Q Consensus 740 ~vl~~~~~~V~aA~lri~g--~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~-~lgV~~LvL~---A~~~A~~~w~~k 813 (851)
++++.+|++||.+.+.... ...+++-.. +.+++| +|||+.++.++++.+. .+++.+|.+. .-..|+.+|+ |
T Consensus 54 ~~~~~~g~~vG~~~~~~~~~~~~~~~~g~~-~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~-k 130 (156)
T TIGR03585 54 WIVCQESRPIGVISFTDINLVHKSAFWGIY-ANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYE-K 130 (156)
T ss_pred EEEEECCEEEEEEEEEecChhhCeEEEEEE-eChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHH-H
Confidence 3446799999999997655 456777655 889999 9999999999999987 5899999875 4478999999 9
Q ss_pred cCcEEcCHHH
Q 003068 814 FGFRKMSRER 823 (851)
Q Consensus 814 fGF~~i~~~~ 823 (851)
+||+..+...
T Consensus 131 ~Gf~~~g~~~ 140 (156)
T TIGR03585 131 FGFEREGVFR 140 (156)
T ss_pred cCCeEeeeeh
Confidence 9999988643
No 60
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.03 E-value=1.9e-05 Score=87.40 Aligned_cols=82 Identities=12% Similarity=0.079 Sum_probs=69.2
Q ss_pred CeEEEEEEe---CCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch-----hhHH
Q 003068 736 GMYSVILTV---KSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA-----EKAE 807 (851)
Q Consensus 736 Gfy~~vl~~---~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~-----~~A~ 807 (851)
..|++.+.+ ++.+||.+.++. ..+.++|..+++++.+||+|+|++||..+++.|++.|+.+|+|... ..|+
T Consensus 230 ~~~~~~~~d~~gd~givG~~~~~~-~~~~~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~ 308 (320)
T TIGR01686 230 EIVTVSMSDRFGDSGIIGIFVFEK-KEGNLFIDDLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFL 308 (320)
T ss_pred CEEEEEEEecCCCCceEEEEEEEe-cCCcEEEEEEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHH
Confidence 355555443 578999998875 4567899999999999999999999999999999999999988643 5799
Q ss_pred HHHHhccCcEEc
Q 003068 808 SIWTKKFGFRKM 819 (851)
Q Consensus 808 ~~w~~kfGF~~i 819 (851)
.||+ ++||...
T Consensus 309 ~fY~-~~GF~~~ 319 (320)
T TIGR01686 309 SFYE-QIGFEDE 319 (320)
T ss_pred HHHH-HcCCccC
Confidence 9999 9999854
No 61
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=97.98 E-value=2e-05 Score=84.21 Aligned_cols=84 Identities=23% Similarity=0.296 Sum_probs=70.0
Q ss_pred eEEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCC-ccEEEecch-hhHHHHHHhcc
Q 003068 737 MYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLN-VENLVLPAA-EKAESIWTKKF 814 (851)
Q Consensus 737 fy~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lg-V~~LvL~A~-~~A~~~w~~kf 814 (851)
+.++.+..+|+||+.|...-.+...|+|-.|+|.|+|||+||+.+|+.++-..+-+-| ..-|+..+. +.|..+|. ++
T Consensus 177 ~~~~f~~~d~~iVa~A~t~a~~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~-ri 255 (268)
T COG3393 177 SRTYFLEGDGKIVAKAETAAENPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQ-RI 255 (268)
T ss_pred eeEEEEccCCcEEEeeeccccCCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHH-Hh
Confidence 5555566777999999999999999999999999999999999999999866555544 555666544 78899999 99
Q ss_pred CcEEcCH
Q 003068 815 GFRKMSR 821 (851)
Q Consensus 815 GF~~i~~ 821 (851)
||+.+++
T Consensus 256 GF~~~g~ 262 (268)
T COG3393 256 GFREIGE 262 (268)
T ss_pred CCeecce
Confidence 9999874
No 62
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=97.97 E-value=1.9e-06 Score=91.03 Aligned_cols=46 Identities=35% Similarity=0.930 Sum_probs=39.5
Q ss_pred ccccccccccC---CCceeecCCCCCcccccccCCC--CCCCCCccccCCC
Q 003068 507 GSDDMCHVCGD---GENLLLCNGCPLAFHAACLDPL--LIPESGWRCPNCR 552 (851)
Q Consensus 507 ~~dd~C~vCgd---gG~Ll~Cd~C~~afH~~Cl~~~--~vp~g~W~C~~C~ 552 (851)
.....|.+||. ..+|++||.|+|+||.+||.|+ ..|+|.|.|.-|.
T Consensus 279 ieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG 329 (336)
T KOG1244|consen 279 IECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCL 329 (336)
T ss_pred eecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHH
Confidence 34568999984 3689999999999999999986 6789999999884
No 63
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.87 E-value=5.3e-06 Score=97.52 Aligned_cols=53 Identities=40% Similarity=0.993 Sum_probs=45.9
Q ss_pred CCccccccCCCCcCCCCccCCCceeecCCCCCc-ccccccCCCCCCCcccCCCCCcEECCCchhH
Q 003068 574 AEVGGCVICRSHDFSAATFDDRTVIYCDQCEKE-FHVGCLRKNGLCDLKEIPKDKWFCCDDCNRI 637 (851)
Q Consensus 574 ~~~~~C~iC~~~~~~~~~~d~~~LL~CdqC~r~-fHv~CL~~~g~~~L~e~P~g~WfCc~~C~~i 637 (851)
.+...|.||..++ .+..||+||.|... ||++||.| +|.++|-+.|+| ..|.-+
T Consensus 213 ~E~~~C~IC~~~D------pEdVLLLCDsCN~~~YH~YCLDP----dl~eiP~~eWYC-~NC~dL 266 (1134)
T KOG0825|consen 213 QEEVKCDICTVHD------PEDVLLLCDSCNKVYYHVYCLDP----DLSESPVNEWYC-TNCSLL 266 (1134)
T ss_pred cccccceeeccCC------hHHhheeecccccceeeccccCc----ccccccccceec-Ccchhh
Confidence 4456799999876 36789999999998 99999997 799999999999 899754
No 64
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.84 E-value=4.8e-06 Score=67.45 Aligned_cols=49 Identities=35% Similarity=0.953 Sum_probs=36.4
Q ss_pred ccccCCCCcCCCCccCCCceeecCCCCCcccccccCCCCCCCcccCCCCCcEECCCch
Q 003068 578 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCN 635 (851)
Q Consensus 578 ~C~iC~~~~~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~e~P~g~WfCc~~C~ 635 (851)
.|.+|++.+ +++.||+|+.|+++||..|+.+... ....+...|+| ..|.
T Consensus 1 ~C~vC~~~~------~~~~~i~C~~C~~~~H~~C~~~~~~--~~~~~~~~w~C-~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSD------DDGDMIQCDSCNRWYHQECVGPPEK--AEEIPSGDWYC-PNCR 49 (51)
T ss_dssp EBTTTTSSC------TTSSEEEBSTTSCEEETTTSTSSHS--HHSHHSSSBSS-HHHH
T ss_pred eCcCCCCcC------CCCCeEEcCCCChhhCcccCCCChh--hccCCCCcEEC-cCCc
Confidence 378888743 5789999999999999999986421 12334559999 6664
No 65
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=97.84 E-value=7.6e-05 Score=75.72 Aligned_cols=84 Identities=11% Similarity=0.228 Sum_probs=67.4
Q ss_pred eEEEEEEeCCEEEEeEEEEEEcC---ceEEEeEeEeeccccccChhHHHHHHHHHHHhh-CCccEEEecch---hhHHHH
Q 003068 737 MYSVILTVKSVVVSAGLLRIFGR---EVAELPLVATCREYQGKGCFQALFSCIERLLCS-LNVENLVLPAA---EKAESI 809 (851)
Q Consensus 737 fy~~vl~~~~~~V~aA~lri~g~---~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~-lgV~~LvL~A~---~~A~~~ 809 (851)
.|.++...++++||.+.+..+.. ..+||- +.+.++|||||||+.++.++.+.+.. +|+++|.+.+. .-|..+
T Consensus 77 ~~~i~~~~~~~~iG~i~l~~~~~~~~~~~eig-~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l 155 (194)
T PRK10809 77 YFALLDPDEKEIIGVANFSNVVRGSFHACYLG-YSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDL 155 (194)
T ss_pred EEEEEECCCCeEEEEEEEEeecCCCeeeEEEE-EEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHH
Confidence 44444445789999999976543 345544 56899999999999999999999876 89999998886 578899
Q ss_pred HHhccCcEEcCHH
Q 003068 810 WTKKFGFRKMSRE 822 (851)
Q Consensus 810 w~~kfGF~~i~~~ 822 (851)
|+ |+||+..+..
T Consensus 156 ~e-k~Gf~~~g~~ 167 (194)
T PRK10809 156 LA-RLGFEKEGYA 167 (194)
T ss_pred HH-HCCCcEEeee
Confidence 99 9999987753
No 66
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=97.84 E-value=6.3e-05 Score=76.40 Aligned_cols=82 Identities=24% Similarity=0.276 Sum_probs=68.4
Q ss_pred EEEEEeCCEEEEeEEEEE--Ec-C--ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhc
Q 003068 739 SVILTVKSVVVSAGLLRI--FG-R--EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKK 813 (851)
Q Consensus 739 ~~vl~~~~~~V~aA~lri--~g-~--~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~k 813 (851)
.+|..++|++|+..++-- ++ + .+.=|--+||++++||||+|++||...++.|+.+|...+++--. ..+|. +
T Consensus 48 slVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlGd---p~YY~-r 123 (171)
T COG3153 48 SLVAEDDGEVVGHILFSPVTVGGEELGWLGLAPLAVDPEYQGQGIGSALVREGLEALRLAGASAVVVLGD---PTYYS-R 123 (171)
T ss_pred eEEEeeCCEEEEEEEEeEEEecCcccceEEEEeEEEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEecC---ccccc-c
Confidence 345578899999998843 23 2 34557789999999999999999999999999999999998877 56786 9
Q ss_pred cCcEEcCHHHH
Q 003068 814 FGFRKMSRERL 824 (851)
Q Consensus 814 fGF~~i~~~~~ 824 (851)
|||+......+
T Consensus 124 fGF~~~~~~~l 134 (171)
T COG3153 124 FGFEPAAGAKL 134 (171)
T ss_pred cCcEEcccccc
Confidence 99999988754
No 67
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=97.80 E-value=0.00015 Score=72.62 Aligned_cols=81 Identities=10% Similarity=0.094 Sum_probs=66.2
Q ss_pred EEEEeCCEEEEeEEEEEEcC--ceEEEeEeEeeccccccChhHHHHHHHHHHHh-hCCccEEEecch---hhHHHHHHhc
Q 003068 740 VILTVKSVVVSAGLLRIFGR--EVAELPLVATCREYQGKGCFQALFSCIERLLC-SLNVENLVLPAA---EKAESIWTKK 813 (851)
Q Consensus 740 ~vl~~~~~~V~aA~lri~g~--~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~-~lgV~~LvL~A~---~~A~~~w~~k 813 (851)
++++.++++||.+.++.... ..+++-. .+.++|||||||+.++.++.+.+. .+|+++|.+.+. ..+..+|+ |
T Consensus 70 ~~i~~~~~~iG~~~l~~~~~~~~~~~ig~-~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~e-k 147 (179)
T PRK10151 70 FMIFKEDELIGVLSFNRIEPLNKTAYIGY-WLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVAL-R 147 (179)
T ss_pred EEEEECCEEEEEEEEEeeccCCCceEEEE-EEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHH-H
Confidence 34456899999999876543 5688865 689999999999999999999876 578999887655 56889999 9
Q ss_pred cCcEEcCHH
Q 003068 814 FGFRKMSRE 822 (851)
Q Consensus 814 fGF~~i~~~ 822 (851)
+||+..+..
T Consensus 148 ~Gf~~~g~~ 156 (179)
T PRK10151 148 NGFTLEGCL 156 (179)
T ss_pred CCCEEEeEe
Confidence 999987764
No 68
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=97.76 E-value=0.00024 Score=67.24 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=65.5
Q ss_pred CeEEEEEEe--CCEEEEeEEEEEE--cCceEEEeEeEeeccccccChhHHHHHHHHHHH-hhCCccEEEecch---hhHH
Q 003068 736 GMYSVILTV--KSVVVSAGLLRIF--GREVAELPLVATCREYQGKGCFQALFSCIERLL-CSLNVENLVLPAA---EKAE 807 (851)
Q Consensus 736 Gfy~~vl~~--~~~~V~aA~lri~--g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l-~~lgV~~LvL~A~---~~A~ 807 (851)
|++.+++.. ++++||...++.. ....+||. +.+.++|||+|||+.++..+.+.+ ..+|+.+|..... ..+.
T Consensus 55 ~~~~~~i~~~~~~~~iG~i~~~~~~~~~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~ 133 (142)
T PF13302_consen 55 GYYYFAIEDKDDGEIIGFIGLYNIDKNNNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASR 133 (142)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEEEETTTTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHH
T ss_pred cceEEEEEeccCCceEEEeeeeecccCCCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHH
Confidence 466666664 3589999999554 46889999 669999999999999999999999 7999999987776 4677
Q ss_pred HHHHhccCcE
Q 003068 808 SIWTKKFGFR 817 (851)
Q Consensus 808 ~~w~~kfGF~ 817 (851)
.+++ |+||+
T Consensus 134 ~~~~-k~GF~ 142 (142)
T PF13302_consen 134 RLLE-KLGFE 142 (142)
T ss_dssp HHHH-HTT-E
T ss_pred HHHH-HcCCC
Confidence 8888 99996
No 70
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=97.75 E-value=8.6e-06 Score=98.96 Aligned_cols=123 Identities=21% Similarity=0.349 Sum_probs=85.4
Q ss_pred ccccccccccCCCceeecCCCCCcccccccCCC--CCCCCCccccCCCCCCCCCCc----------ccccccCCccC---
Q 003068 507 GSDDMCHVCGDGENLLLCNGCPLAFHAACLDPL--LIPESGWRCPNCRQGHSSSMS----------RSVDLKGGLEA--- 571 (851)
Q Consensus 507 ~~dd~C~vCgdgG~Ll~Cd~C~~afH~~Cl~~~--~vp~g~W~C~~C~~~~~~ea~----------dpI~l~r~~~~--- 571 (851)
.-+|.|.+|.+.|.++||..||+.||..|..++ .+|+..|.|.-|..+.-.++. +.||..-+--+
T Consensus 342 ~~ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~K~~~~iR~~~iG~dr~g 421 (1414)
T KOG1473|consen 342 EYDDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPSKNVDSIRHTPIGRDRYG 421 (1414)
T ss_pred eecccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChhhcccceeccCCCcCccc
Confidence 346899999999999999999999999999975 688999999999753222221 11222111111
Q ss_pred --CCCCccccccCCCCcCCCCccCCCceeecCC-CCCcccc-cccCCCCCCCcccCCCCCcEECCCchhHHHHH
Q 003068 572 --PGAEVGGCVICRSHDFSAATFDDRTVIYCDQ-CEKEFHV-GCLRKNGLCDLKEIPKDKWFCCDDCNRIHAAL 641 (851)
Q Consensus 572 --~~~~~~~C~iC~~~~~~~~~~d~~~LL~Cdq-C~r~fHv-~CL~~~g~~~L~e~P~g~WfCc~~C~~i~~~L 641 (851)
-......|.||+. +++++.|+. |++.||. .||...- --..++.+-|+| .+|-.-+.+|
T Consensus 422 r~ywfi~rrl~Ie~~---------det~l~yysT~pqly~ll~cLd~~~--~e~~L~d~i~~~-~ee~~rqM~l 483 (1414)
T KOG1473|consen 422 RKYWFISRRLRIEGM---------DETLLWYYSTCPQLYHLLRCLDRTY--VEMYLCDGIWER-REEIIRQMGL 483 (1414)
T ss_pred cchhceeeeeEEecC---------CCcEEEEecCcHHHHHHHHHhchHH--HHHhhccchhhh-HHHHHHhccc
Confidence 1112246889984 578899997 9999998 9997321 123577889999 7775544433
No 71
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.75 E-value=6.8e-06 Score=87.41 Aligned_cols=82 Identities=21% Similarity=0.487 Sum_probs=58.4
Q ss_pred EecCceecCCCCCccCccccccccCCcccCCCCceeEccCCcchHHHHHHhhccCcccCCccccccccccCC---Cceee
Q 003068 447 KQGNGIVCDCCNKEISPSQFEAHAGMAARRQPYRHIYTSNGMTLHDIAISLAMGQRRTTGGSDDMCHVCGDG---ENLLL 523 (851)
Q Consensus 447 ~qg~gI~C~cC~~~~Sps~FE~hAG~~~rr~Py~~I~~~~G~sL~~l~~~l~~~~~~~~~~~dd~C~vCgdg---G~Ll~ 523 (851)
+..+.|.|..|....+|+..+..-...+ .-.+..+.+ -....|.+|+.. .++++
T Consensus 275 r~~S~I~C~~C~~~~HP~Ci~M~~elv~--------------------~~KTY~W~C---~~C~lC~IC~~P~~E~E~~F 331 (381)
T KOG1512|consen 275 RRNSWIVCKPCATRPHPYCVAMIPELVG--------------------QYKTYFWKC---SSCELCRICLGPVIESEHLF 331 (381)
T ss_pred hhccceeecccccCCCCcchhcCHHHHh--------------------HHhhcchhh---cccHhhhccCCcccchheec
Confidence 3456799999988888876553221110 000111222 345789999864 69999
Q ss_pred cCCCCCcccccccCCCCCCCCCcccc-CC
Q 003068 524 CNGCPLAFHAACLDPLLIPESGWRCP-NC 551 (851)
Q Consensus 524 Cd~C~~afH~~Cl~~~~vp~g~W~C~-~C 551 (851)
||.|+|+||++|+|+..+|.|.|.|. +|
T Consensus 332 CD~CDRG~HT~CVGL~~lP~G~WICD~~C 360 (381)
T KOG1512|consen 332 CDVCDRGPHTLCVGLQDLPRGEWICDMRC 360 (381)
T ss_pred cccccCCCCccccccccccCccchhhhHH
Confidence 99999999999999999999999998 45
No 72
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=97.74 E-value=5.5e-05 Score=75.98 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=66.0
Q ss_pred eCCEEEEeEEE-EEEcC-ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEcCH
Q 003068 744 VKSVVVSAGLL-RIFGR-EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMSR 821 (851)
Q Consensus 744 ~~~~~V~aA~l-ri~g~-~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i~~ 821 (851)
.+.+|||-++| ||... +.--|..|.|.+++||||+|+.||+..|..++..|++.+.|.+..| ..||+ ++||+.-+.
T Consensus 64 ~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ-~~FYe-~lGYe~c~P 141 (225)
T KOG3397|consen 64 ENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQ-CRFYE-SLGYEKCDP 141 (225)
T ss_pred cccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccc-hhhhh-hhcccccCc
Confidence 34678888777 44444 4456899999999999999999999999999999999999988755 68999 999998777
Q ss_pred HHH
Q 003068 822 ERL 824 (851)
Q Consensus 822 ~~~ 824 (851)
-+.
T Consensus 142 i~~ 144 (225)
T KOG3397|consen 142 IVH 144 (225)
T ss_pred eec
Confidence 543
No 73
>smart00258 SAND SAND domain.
Probab=97.72 E-value=1.5e-05 Score=69.94 Aligned_cols=62 Identities=26% Similarity=0.347 Sum_probs=54.6
Q ss_pred eEE-EECCEEeeeeEEecCceecCCC-CCccCccccccccCCcccCCCCceeEccCCcchHHHHH
Q 003068 433 LTY-IVKGQRLRFGCKQGNGIVCDCC-NKEISPSQFEAHAGMAARRQPYRHIYTSNGMTLHDIAI 495 (851)
Q Consensus 433 v~Y-~~kGq~~l~G~~qg~gI~C~cC-~~~~Sps~FE~hAG~~~rr~Py~~I~~~~G~sL~~l~~ 495 (851)
|++ .++|.++++.+++|...+|+.+ ++|+||++||.+||+...++|..+|+ .+|.+|..++.
T Consensus 5 V~CG~~~g~L~~~kf~~G~~~kCI~~~~~~~TP~eFe~~~g~~~~K~WK~sIR-~~g~~Lr~L~~ 68 (73)
T smart00258 5 VTCGTVKGILYKKKFKCGISVKCIQYEDKWFTPKEFEIEGGKGKSKDWKRSIR-CGGSSLRTLME 68 (73)
T ss_pred eeeCCeeeeeeHhhhhcCcccCCccCCCEEEChHHHHhhcCCcccCCcchhee-ECCccHHHHHH
Confidence 555 4678899999999888899976 78999999999999998999999998 89999998875
No 74
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=97.70 E-value=0.00021 Score=74.10 Aligned_cols=86 Identities=17% Similarity=0.177 Sum_probs=61.3
Q ss_pred cCeEEEEEEeCC--EEEEeEEEEEEc-------------------------------------CceEEEeEeEeeccccc
Q 003068 735 GGMYSVILTVKS--VVVSAGLLRIFG-------------------------------------REVAELPLVATCREYQG 775 (851)
Q Consensus 735 ~Gfy~~vl~~~~--~~V~aA~lri~g-------------------------------------~~~AElp~vAt~~~~Rg 775 (851)
-+...++|..++ ++++|+-+-.-| -..+.|-||||.|++|+
T Consensus 25 P~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIAvhP~~q~ 104 (196)
T PF13718_consen 25 PNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIAVHPDLQR 104 (196)
T ss_dssp TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEEE-CCC-S
T ss_pred CcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEEEChhhhc
Confidence 345667778777 888888875553 23688999999999999
Q ss_pred cChhHHHHHHHHHHH-------------------------hhCCccEEE--ecchhhHHHHHHhccCcEEcCH
Q 003068 776 KGCFQALFSCIERLL-------------------------CSLNVENLV--LPAAEKAESIWTKKFGFRKMSR 821 (851)
Q Consensus 776 qG~gr~L~~~iE~~l-------------------------~~lgV~~Lv--L~A~~~A~~~w~~kfGF~~i~~ 821 (851)
+|||++|++.+++.+ +.-+|..|= -.+.++...||. |.||.++-=
T Consensus 105 ~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~-k~gf~pv~l 176 (196)
T PF13718_consen 105 MGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQ-KNGFVPVYL 176 (196)
T ss_dssp SSHHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHH-CTT-EEEEE
T ss_pred CCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHH-HCCcEEEEE
Confidence 999999999999999 467777654 345688999999 999998754
No 75
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.63 E-value=0.00032 Score=71.23 Aligned_cols=109 Identities=16% Similarity=0.154 Sum_probs=77.9
Q ss_pred ceecCeEEEEEEeC-CEEEEeEEEEEEcC-----ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEec--ch
Q 003068 732 QEFGGMYSVILTVK-SVVVSAGLLRIFGR-----EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLP--AA 803 (851)
Q Consensus 732 ~~~~Gfy~~vl~~~-~~~V~aA~lri~g~-----~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~--A~ 803 (851)
..=.||+.+|+..+ |+++|=|.+..+.. .++|. .|.+++++||+|+|++|++++.+.+..+|+..++.- +.
T Consensus 47 ~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~tve~-SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~ 125 (169)
T COG1247 47 RTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRHTVEL-SIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESD 125 (169)
T ss_pred cccCCceEEEEEcCCCeEEEEEEeeeccCccccceEEEE-EEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCC
Confidence 33357999999865 99999999877643 45554 578999999999999999999999999999887632 22
Q ss_pred -hhHHHHHHhccCcEEcCHHHHHhhhccceeeeecCcceecccc
Q 003068 804 -EKAESIWTKKFGFRKMSRERLLKYQRDFQLTIFKGTSMLEKKV 846 (851)
Q Consensus 804 -~~A~~~w~~kfGF~~i~~~~~~~~~~~~~l~~F~gt~ml~K~l 846 (851)
..-..+.+ +|||+..+....-.+. .-.+=.+.++|+.|
T Consensus 126 n~aSi~lh~-~~GF~~~G~~~~vg~k----~g~wld~~~~~~~l 164 (169)
T COG1247 126 NLASIALHE-KLGFEEVGTFPEVGDK----FGRWLDLVLMQLLL 164 (169)
T ss_pred CcHhHHHHH-HCCCEEeccccccccc----cceEEeeeeeehhh
Confidence 33345666 9999999984332221 12333445555554
No 76
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=97.58 E-value=2.2e-05 Score=63.61 Aligned_cols=42 Identities=40% Similarity=1.170 Sum_probs=35.3
Q ss_pred ccccccC---CCceeecCCCCCcccccccCCC----CCCCCCccccCCC
Q 003068 511 MCHVCGD---GENLLLCNGCPLAFHAACLDPL----LIPESGWRCPNCR 552 (851)
Q Consensus 511 ~C~vCgd---gG~Ll~Cd~C~~afH~~Cl~~~----~vp~g~W~C~~C~ 552 (851)
+|.+|+. .++++.|+.|.+.||..|++++ ..+.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 4778875 6799999999999999999985 3345699999985
No 78
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=97.45 E-value=4.9e-05 Score=88.89 Aligned_cols=102 Identities=25% Similarity=0.568 Sum_probs=69.8
Q ss_pred ccccccc---CCCceeecCCCCCcccccccCC--CCCCCCCccccCCCCCCCCCCcccccccCC-----ccCCCCCcccc
Q 003068 510 DMCHVCG---DGENLLLCNGCPLAFHAACLDP--LLIPESGWRCPNCRQGHSSSMSRSVDLKGG-----LEAPGAEVGGC 579 (851)
Q Consensus 510 d~C~vCg---dgG~Ll~Cd~C~~afH~~Cl~~--~~vp~g~W~C~~C~~~~~~ea~dpI~l~r~-----~~~~~~~~~~C 579 (851)
-.|..|+ |...+++|+.|+-+||-+|..| ..++.|.|+|+.|..+.+++..-|-...++ .+.+......|
T Consensus 69 rvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~qc~~~lpg~s~~~~~~~~~~~~c~s~~~c 148 (694)
T KOG4443|consen 69 RVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCRQCDSTLPGLSLDLQEGYLQCAPCASLSYC 148 (694)
T ss_pred eeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHHhhhhccccccccchhhhccCcccccccccccC
Confidence 4566665 5568999999999999999998 479999999999977666654222211122 22333334567
Q ss_pred ccCCCCcCCCCccCCCceeecCCCCCcccccccCC
Q 003068 580 VICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRK 614 (851)
Q Consensus 580 ~iC~~~~~~~~~~d~~~LL~CdqC~r~fHv~CL~~ 614 (851)
.+|...... -+.-.+++|++|.+|-|-.|-.-
T Consensus 149 Pvc~~~Y~~---~e~~~~~~c~~c~rwsh~~c~~~ 180 (694)
T KOG4443|consen 149 PVCLIVYQD---SESLPMVCCSICQRWSHGGCDGI 180 (694)
T ss_pred chHHHhhhh---ccchhhHHHHHhcccccCCCCcc
Confidence 777654321 12335699999999999999753
No 79
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00097 Score=66.20 Aligned_cols=88 Identities=19% Similarity=0.217 Sum_probs=71.8
Q ss_pred eecCeEEEEEEe-CCEEEEeEEEEEE-----cCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEE---Eecch
Q 003068 733 EFGGMYSVILTV-KSVVVSAGLLRIF-----GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENL---VLPAA 803 (851)
Q Consensus 733 ~~~Gfy~~vl~~-~~~~V~aA~lri~-----g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~L---vL~A~ 803 (851)
.|.=.+.+.++. +++|+|-|.+... +.+.--|.=+.|+++|||+|+|+.|++.+-+.|..+|..++ ++.--
T Consensus 50 ~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN 129 (163)
T KOG3216|consen 50 PFKHWLVAAIETSGEVVAGFALYFNNYSTWLGKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWN 129 (163)
T ss_pred CccEEEEEEEecCCCceeEEeeeecccccccccceEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence 344455555554 8899999987653 44666788999999999999999999999999999999875 55666
Q ss_pred hhHHHHHHhccCcEEcCH
Q 003068 804 EKAESIWTKKFGFRKMSR 821 (851)
Q Consensus 804 ~~A~~~w~~kfGF~~i~~ 821 (851)
.-|+.+|+ +.|++..+.
T Consensus 130 ~rAi~lY~-k~gaq~l~~ 146 (163)
T KOG3216|consen 130 HRAILLYE-KVGAQDLKE 146 (163)
T ss_pred hhHHHHHH-HhCccccce
Confidence 89999999 999988766
No 80
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.34 E-value=0.00011 Score=86.77 Aligned_cols=108 Identities=23% Similarity=0.460 Sum_probs=65.0
Q ss_pred eeeeEEecCceecCCCCCccCccccccccCCcccCCCCceeEccCCcc----hHHHHHH-----hhc--c----CcccCC
Q 003068 442 LRFGCKQGNGIVCDCCNKEISPSQFEAHAGMAARRQPYRHIYTSNGMT----LHDIAIS-----LAM--G----QRRTTG 506 (851)
Q Consensus 442 ~l~G~~qg~gI~C~cC~~~~Sps~FE~hAG~~~rr~Py~~I~~~~G~s----L~~l~~~-----l~~--~----~~~~~~ 506 (851)
+..-.+...+++|..|-..|+- ..-.|...|.-|..|-+-+... +..+-.+ +.+ + +-....
T Consensus 137 L~~~~k~c~H~FC~~Ci~sWsR----~aqTCPiDR~EF~~v~V~eS~~~~~~vR~lP~EEs~~~~e~~~d~~~d~~~~~~ 212 (1134)
T KOG0825|consen 137 LEESEKHTAHYFCEECVGSWSR----CAQTCPVDRGEFGEVKVLESTGIEANVRCLPSEESENILEKGGDEKQDQISGLS 212 (1134)
T ss_pred hhccccccccccHHHHhhhhhh----hcccCchhhhhhheeeeeccccccceeEecchhhhhhhhhhccccccccccCcc
Confidence 3344467778888888655553 2233455555555554322111 1111111 111 0 011112
Q ss_pred ccccccccccCC---CceeecCCCCCc-ccccccCCC--CCCCCCccccCCCC
Q 003068 507 GSDDMCHVCGDG---ENLLLCNGCPLA-FHAACLDPL--LIPESGWRCPNCRQ 553 (851)
Q Consensus 507 ~~dd~C~vCgdg---G~Ll~Cd~C~~a-fH~~Cl~~~--~vp~g~W~C~~C~~ 553 (851)
....-|.+|+-. .-||+||.|..+ ||.+||+|+ ++|-+.|||..|.-
T Consensus 213 ~E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 213 QEEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred cccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 334569999853 579999999999 999999985 59999999999964
No 81
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.17 E-value=0.00015 Score=79.05 Aligned_cols=42 Identities=29% Similarity=0.831 Sum_probs=37.9
Q ss_pred ccccccCCCceeecCC--CC-CcccccccCCCCCCCCCccccCCCC
Q 003068 511 MCHVCGDGENLLLCNG--CP-LAFHAACLDPLLIPESGWRCPNCRQ 553 (851)
Q Consensus 511 ~C~vCgdgG~Ll~Cd~--C~-~afH~~Cl~~~~vp~g~W~C~~C~~ 553 (851)
+|. |...|+|+-||. |+ ..||..|+|+...|.|.|||+.|..
T Consensus 223 ~Cn-qvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 223 ICN-QVSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKA 267 (274)
T ss_pred Eec-ccccccccccCCCCCCcceEEEeccccccCCCCcccchhhhh
Confidence 355 667899999999 99 9999999999999999999999964
No 82
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=97.10 E-value=2.6e-05 Score=70.13 Aligned_cols=63 Identities=30% Similarity=0.382 Sum_probs=48.9
Q ss_pred eeEE-EECCEEeeeeE-EecCceecCCC-CCccCccccccccCCcccCCCCceeEccCCcchHHHHH
Q 003068 432 RLTY-IVKGQRLRFGC-KQGNGIVCDCC-NKEISPSQFEAHAGMAARRQPYRHIYTSNGMTLHDIAI 495 (851)
Q Consensus 432 ~v~Y-~~kGq~~l~G~-~qg~gI~C~cC-~~~~Sps~FE~hAG~~~rr~Py~~I~~~~G~sL~~l~~ 495 (851)
+|++ .++|.++++.+ .+|...+|+.+ ++|+||++||.++|+...++|+.+|+. +|.+|..++.
T Consensus 12 pVtCG~~~G~L~~~k~~~~g~~~kCI~~~g~~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~li~ 77 (82)
T PF01342_consen 12 PVTCGDVKGTLYKKKFVKQGICGKCIQCEGRWFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGKLIE 77 (82)
T ss_dssp EEEETTEEEEEEHHHH-TTGTTSS-EEETTEEE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHHHHH
T ss_pred eeEeCCeEEEEEHHHhhcccccCceEeeCCcEECHHHHHhhcCcccCCCCCccEEE-CCEEHHHHHh
Confidence 3565 35788887777 67667677753 899999999999999999999999994 9999998764
No 83
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.98 E-value=0.00033 Score=74.20 Aligned_cols=44 Identities=39% Similarity=1.084 Sum_probs=36.8
Q ss_pred ccccCCCCcCCCCccCCCceeecC--CCCC-cccccccCCCCCCCcccCCCCCcEECCCchh
Q 003068 578 GCVICRSHDFSAATFDDRTVIYCD--QCEK-EFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 636 (851)
Q Consensus 578 ~C~iC~~~~~~~~~~d~~~LL~Cd--qC~r-~fHv~CL~~~g~~~L~e~P~g~WfCc~~C~~ 636 (851)
+| +|.+.- .+.|+-|| .|++ |||..|+. |++.|+|.|+| ++|+.
T Consensus 223 YC-fCqqvS-------yGqMVaCDn~nCkrEWFH~~CVG------Lk~pPKG~WYC-~eCk~ 269 (271)
T COG5034 223 YC-FCQQVS-------YGQMVACDNANCKREWFHLECVG------LKEPPKGKWYC-PECKK 269 (271)
T ss_pred EE-Eecccc-------cccceecCCCCCchhheeccccc------cCCCCCCcEeC-HHhHh
Confidence 55 577653 68899999 7985 99999996 88999999999 89975
No 84
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.95 E-value=0.0027 Score=68.89 Aligned_cols=78 Identities=18% Similarity=0.312 Sum_probs=69.9
Q ss_pred EEEEEE-eCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCc
Q 003068 738 YSVILT-VKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGF 816 (851)
Q Consensus 738 y~~vl~-~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF 816 (851)
|+++.+ +|+++|+|+.+ .|. -|.-|||++.+||-|+.-+|+..+..++-++|..+|++-+-++...++. .+||
T Consensus 37 ~~v~~~~~~~~iiacGsi--aGn---vikcvAvs~s~qGeGl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk-~~GF 110 (352)
T COG3053 37 YFVAIYRDNEEIIACGSI--AGN---VIKCVAVSESLQGEGLALKLVTELINLAYERGRTHLFIYTKPEYAALFK-QCGF 110 (352)
T ss_pred EEEEEEcCCCcEEEeccc--ccc---eeEEEEechhcccccHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHH-hCCc
Confidence 444556 55999999996 465 3899999999999999999999999999999999999999999999999 9999
Q ss_pred EEcCH
Q 003068 817 RKMSR 821 (851)
Q Consensus 817 ~~i~~ 821 (851)
..+..
T Consensus 111 ~~i~~ 115 (352)
T COG3053 111 SEIAS 115 (352)
T ss_pred eEeec
Confidence 99876
No 85
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=96.90 E-value=0.00036 Score=76.04 Aligned_cols=36 Identities=42% Similarity=0.973 Sum_probs=31.3
Q ss_pred CCceeecCC--CC-CcccccccCCCCCCCcccCCCCCcEECCCchh
Q 003068 594 DRTVIYCDQ--CE-KEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 636 (851)
Q Consensus 594 ~~~LL~Cdq--C~-r~fHv~CL~~~g~~~L~e~P~g~WfCc~~C~~ 636 (851)
.+.|+-||. |+ .|||..|+. |...|.|.|||+ .|..
T Consensus 229 yg~Mi~CDn~~C~~eWFH~~CVG------L~~~PkgkWyC~-~C~~ 267 (274)
T KOG1973|consen 229 YGKMIGCDNPGCPIEWFHFTCVG------LKTKPKGKWYCP-RCKA 267 (274)
T ss_pred cccccccCCCCCCcceEEEeccc------cccCCCCcccch-hhhh
Confidence 688999997 99 999999996 778899999995 6654
No 86
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=96.86 E-value=0.0063 Score=66.16 Aligned_cols=78 Identities=17% Similarity=0.051 Sum_probs=57.6
Q ss_pred EEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEcCH
Q 003068 742 LTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMSR 821 (851)
Q Consensus 742 l~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i~~ 821 (851)
+..+|++||.|.-....++.+||. |+|+++|||||+++++-.++...+.+.|+--.+=-+-..-..+=+ ||||+...+
T Consensus 170 i~~~~~iVs~~~s~~~~~~~~EI~-I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~N~~S~~lA~-kLGf~~~~~ 247 (265)
T PF12746_consen 170 ILHDGEIVSGCSSYFVYENGIEID-IETHPEYRGKGLATAVAAAFILECLENGLYPSWDCHNLASIALAE-KLGFHFDFE 247 (265)
T ss_dssp EEETTEEEEEEEEEEEETTEEEEE-EEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EESSHHHHHHHH-HCT--EEEE
T ss_pred EEECCEEEEEEEEEEEECCEEEEE-EEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCCCHHHHHHHH-HcCCcccce
Confidence 356899999888777788888986 789999999999999999999999999988776543333344444 999987543
No 87
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=96.72 E-value=0.011 Score=57.38 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=56.5
Q ss_pred eEEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch------hhHHHHH
Q 003068 737 MYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA------EKAESIW 810 (851)
Q Consensus 737 fy~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~------~~A~~~w 810 (851)
+|++ .-|+.++||+.+.+.|. .++|.-+.|++.-||+|.|+.|++.+.+.+. +|....|.+. ..+..-+
T Consensus 40 l~aA--rFNdRlLgAv~v~~~~~-~~~L~~l~VRevTRrRGVG~yLlee~~rq~p--~i~~w~l~~~~~~~~~~~~~~~F 114 (128)
T PF12568_consen 40 LFAA--RFNDRLLGAVKVTISGQ-QAELSDLCVREVTRRRGVGLYLLEEVLRQLP--DIKHWWLADEGVEPQDRAVMAAF 114 (128)
T ss_dssp EEEE--EETTEEEEEEEEEEETT-EEEEEEEEE-TT-SSSSHHHHHHHHHHHHS---S--EEEE--TT-S--THHHHHHH
T ss_pred EEEE--EechheeeeEEEEEcCc-ceEEeeEEEeeccccccHHHHHHHHHHHHCC--CCcEEEEecCCCcccchHHHHHH
Confidence 4554 78999999999998655 7999999999999999999999999999994 4555554443 2344445
Q ss_pred HhccCcEEcCH
Q 003068 811 TKKFGFRKMSR 821 (851)
Q Consensus 811 ~~kfGF~~i~~ 821 (851)
...+||...++
T Consensus 115 m~a~GF~~~~~ 125 (128)
T PF12568_consen 115 MQACGFSAQSD 125 (128)
T ss_dssp HHHHT-EE-SS
T ss_pred HHHcCccccCC
Confidence 55999987654
No 88
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=96.69 E-value=0.0059 Score=56.96 Aligned_cols=73 Identities=16% Similarity=0.171 Sum_probs=61.7
Q ss_pred cCeEEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHH
Q 003068 735 GGMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWT 811 (851)
Q Consensus 735 ~Gfy~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~ 811 (851)
+++|++ ..+|+.++.++.-..|.++.-|.--.|..++||||++++|+....+.+++.|.+ +.|..+-|...|.
T Consensus 15 ~~~y~~--~~~G~~~~e~~y~~~~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~k--iiP~Csf~~a~~~ 87 (99)
T COG2388 15 NGRYVL--TDEGEVIGEATYYDRGENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLK--IIPLCSFAVATYF 87 (99)
T ss_pred ceEEEE--ecCCcEEEEEEEecCCCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCe--EcccchHHHHHHH
Confidence 577876 888999999998888989999999999999999999999999999999999985 4566654444343
No 89
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=96.63 E-value=0.0078 Score=53.57 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=55.7
Q ss_pred EEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHH
Q 003068 740 VILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWT 811 (851)
Q Consensus 740 ~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~ 811 (851)
+.+..+|+.+|....+. ++++..|--.-|.+++||||+|+.|++++.+.+++.|.+-+ |..+-|..+..
T Consensus 2 F~~~~~g~~~a~l~Y~~-~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~kv~--p~C~y~~~~~~ 70 (78)
T PF14542_consen 2 FELKDDGEEIAELTYRE-DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLKVV--PTCSYVAKYFR 70 (78)
T ss_dssp EEEESSTTEEEEEEEEE-SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-EEE--ETSHHHHHHHH
T ss_pred EEEEECCEEEEEEEEEe-CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCEEE--EECHHHHHHHH
Confidence 34577789999999976 88899999999999999999999999999999999998744 55555554443
No 90
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.013 Score=57.45 Aligned_cols=89 Identities=20% Similarity=0.291 Sum_probs=70.6
Q ss_pred cCeEEEEEEeCC--EEEEeEEEEEEc----CceEEEeEeEeeccccccChhHHHHHHHHHHHhh-CCccEEEecch---h
Q 003068 735 GGMYSVILTVKS--VVVSAGLLRIFG----REVAELPLVATCREYQGKGCFQALFSCIERLLCS-LNVENLVLPAA---E 804 (851)
Q Consensus 735 ~Gfy~~vl~~~~--~~V~aA~lri~g----~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~-lgV~~LvL~A~---~ 804 (851)
.+.|.+++..++ ++||...+..+. .+.+++-..- .++|+||||+...+.++.+.+-. +++.+|++-.. .
T Consensus 64 ~~~~~~~~~~~~~~~~iG~~~~~~~~~~~~~~~~~ig~~l-~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~ 142 (187)
T COG1670 64 GGAFAIELKATGDGELIGVIGLSDIDRAANGDLAEIGYWL-DPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENE 142 (187)
T ss_pred CceEEEEEEeCCCCeEEEEEEEEEeccccccceEEEEEEE-ChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCH
Confidence 455666666544 999999998665 5677777665 99999999999999999988766 99999988766 4
Q ss_pred hHHHHHHhccCcEEcCHHHHH
Q 003068 805 KAESIWTKKFGFRKMSRERLL 825 (851)
Q Consensus 805 ~A~~~w~~kfGF~~i~~~~~~ 825 (851)
-+...++ |+||+..+.....
T Consensus 143 ~S~rv~e-k~Gf~~eg~~~~~ 162 (187)
T COG1670 143 ASIRVYE-KLGFRLEGELRQH 162 (187)
T ss_pred HHHHHHH-HcCChhhhhhhhc
Confidence 6678888 9999998875443
No 91
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=96.53 E-value=0.0022 Score=66.11 Aligned_cols=61 Identities=20% Similarity=0.281 Sum_probs=55.6
Q ss_pred eEEEeEeEeeccccccChhHHHHHHHHHHHhhCC-ccEEEecch---hhHHHHHHhccCcEEcCHH
Q 003068 761 VAELPLVATCREYQGKGCFQALFSCIERLLCSLN-VENLVLPAA---EKAESIWTKKFGFRKMSRE 822 (851)
Q Consensus 761 ~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lg-V~~LvL~A~---~~A~~~w~~kfGF~~i~~~ 822 (851)
+.-+..++|.+.||.+|+|+.|++.+.+.+...+ .+++.|+++ ..|..||+ ++||+.+..-
T Consensus 89 ~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~-~~gF~~~~~~ 153 (187)
T KOG3138|consen 89 VIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYE-KRGFEIVERL 153 (187)
T ss_pred eeEEEeecccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHH-hcCceEeecc
Confidence 5668999999999999999999999999999999 888888887 68999999 9999998874
No 92
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=96.47 E-value=0.0035 Score=52.98 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=40.4
Q ss_pred eEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCc
Q 003068 767 VATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGF 816 (851)
Q Consensus 767 vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF 816 (851)
++|+++|||+|+|+.|++.+++.++..|+. ....+..+|. ++||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~-----~~~~~~~~~~-~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS-----LNRLALEVYE-KNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce-----ehHHHHHHHH-hcCC
Confidence 999999999999999999999999998887 5567788898 8998
No 93
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=96.41 E-value=0.0027 Score=63.19 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=53.1
Q ss_pred CceEEEeEeEeeccccccChhHHHHHH-HHHHHhhCCccEEEecchhhHHHHHHhccCcEEcCH
Q 003068 759 REVAELPLVATCREYQGKGCFQALFSC-IERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMSR 821 (851)
Q Consensus 759 ~~~AElp~vAt~~~~RgqG~gr~L~~~-iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i~~ 821 (851)
...+.|-.+|+.++||.||++..|+.. |..+...-=+++.+|=+-.-.++||+ +|||+.+++
T Consensus 99 g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYE-r~gFk~vgp 161 (190)
T KOG4144|consen 99 GHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYE-RFGFKAVGP 161 (190)
T ss_pred CcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhH-hcCceeecc
Confidence 344788899999999999999999987 55555555677899989999999999 999999998
No 94
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=96.39 E-value=0.0058 Score=55.93 Aligned_cols=74 Identities=23% Similarity=0.266 Sum_probs=58.6
Q ss_pred EEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccE--EEecchhhHHHHHHhccCcEEc
Q 003068 742 LTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVEN--LVLPAAEKAESIWTKKFGFRKM 819 (851)
Q Consensus 742 l~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~--LvL~A~~~A~~~w~~kfGF~~i 819 (851)
|--+|.|||=.. -+..+||+.-+|.|+|||||+.+.++....+.|.++|+.- -|..+-...+.+-. ++||..+
T Consensus 4 lgpeG~PVSW~l----mdqtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~-~lg~~~~ 78 (89)
T PF08444_consen 4 LGPEGNPVSWSL----MDQTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFPFYGHVDEDNEASQRLSK-SLGFIFM 78 (89)
T ss_pred cCCCCCEeEEEE----ecccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCCeEeehHhccHHHHHHHH-HCCCeec
Confidence 345688888655 4578999999999999999999999999999999999984 23333355566666 8888877
Q ss_pred C
Q 003068 820 S 820 (851)
Q Consensus 820 ~ 820 (851)
+
T Consensus 79 p 79 (89)
T PF08444_consen 79 P 79 (89)
T ss_pred C
Confidence 5
No 95
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.38 E-value=0.0037 Score=75.97 Aligned_cols=59 Identities=17% Similarity=0.161 Sum_probs=49.6
Q ss_pred EEEeEeEeeccccccChhHHHHHHHHHHHh-hCCccEEEecchhhHHHHHHhccCcEEcCH
Q 003068 762 AELPLVATCREYQGKGCFQALFSCIERLLC-SLNVENLVLPAAEKAESIWTKKFGFRKMSR 821 (851)
Q Consensus 762 AElp~vAt~~~~RgqG~gr~L~~~iE~~l~-~lgV~~LvL~A~~~A~~~w~~kfGF~~i~~ 821 (851)
+.|-||||+|++|++|||++|++.|++.++ .+..=-.--.+.++...||. |.||.++-=
T Consensus 532 ~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~~~~DwlgvsFG~t~~L~rFW~-rnGF~pVhl 591 (758)
T COG1444 532 WRIVRIAVHPELQRMGIGSRLLALLIEEARKGLDWLGVSFGYTEELLRFWL-RNGFVPVHL 591 (758)
T ss_pred eeEEEEEeCHHHHhcCHHHHHHHHHHHHHhcCCCEEeeccCCCHHHHHHHH-HcCeEEEEe
Confidence 678899999999999999999999999996 33333344567799999999 999998754
No 96
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=96.38 E-value=0.0086 Score=61.58 Aligned_cols=83 Identities=24% Similarity=0.323 Sum_probs=62.2
Q ss_pred EEEEEEeCCEEEEeEEEEEE---cCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEe---cchhhHHHHHH
Q 003068 738 YSVILTVKSVVVSAGLLRIF---GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL---PAAEKAESIWT 811 (851)
Q Consensus 738 y~~vl~~~~~~V~aA~lri~---g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL---~A~~~A~~~w~ 811 (851)
|.+.....+++||-+.+|.- |..++=.=-|=+.++|||+|+|+.||+.+|.++.....+.++| ..-.-|.+||.
T Consensus 94 Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy~ 173 (202)
T KOG2488|consen 94 YICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFYH 173 (202)
T ss_pred EEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHHH
Confidence 44333334589999999873 3334444444556799999999999999999999988886654 34478899999
Q ss_pred hccCcEEcCH
Q 003068 812 KKFGFRKMSR 821 (851)
Q Consensus 812 ~kfGF~~i~~ 821 (851)
++||-+...
T Consensus 174 -~~gf~~~~~ 182 (202)
T KOG2488|consen 174 -RLGFVVDEE 182 (202)
T ss_pred -HcCcccCCC
Confidence 999988765
No 97
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=96.30 E-value=0.0017 Score=68.88 Aligned_cols=45 Identities=29% Similarity=0.864 Sum_probs=37.2
Q ss_pred ccccccccccC--CCceeecCC--CCC-cccccccCCCCCCCCCccccCCC
Q 003068 507 GSDDMCHVCGD--GENLLLCNG--CPL-AFHAACLDPLLIPESGWRCPNCR 552 (851)
Q Consensus 507 ~~dd~C~vCgd--gG~Ll~Cd~--C~~-afH~~Cl~~~~vp~g~W~C~~C~ 552 (851)
++.-+|. |.. -|+|+-||+ |.+ .||..|+|+...|.|.|||+.|+
T Consensus 219 ~e~lYCf-CqqvSyGqMVaCDn~nCkrEWFH~~CVGLk~pPKG~WYC~eCk 268 (271)
T COG5034 219 GEELYCF-CQQVSYGQMVACDNANCKREWFHLECVGLKEPPKGKWYCPECK 268 (271)
T ss_pred CceeEEE-ecccccccceecCCCCCchhheeccccccCCCCCCcEeCHHhH
Confidence 3444565 554 589999999 876 58999999999999999999996
No 98
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.18 E-value=0.0017 Score=73.92 Aligned_cols=47 Identities=36% Similarity=1.008 Sum_probs=40.2
Q ss_pred cccccCCCCcCCCCccCCCceeecCCCCCcccccccCCCCCCCcccCCCC----CcEECCCc
Q 003068 577 GGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKD----KWFCCDDC 634 (851)
Q Consensus 577 ~~C~iC~~~~~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~e~P~g----~WfCc~~C 634 (851)
..|.||++.. +..-+++||.|...||.+||.| +|..+|+. -|.| ..|
T Consensus 545 ysCgiCkks~------dQHll~~CDtC~lhYHlGCL~P----PLTR~Pkk~kn~gWqC-sEC 595 (707)
T KOG0957|consen 545 YSCGICKKST------DQHLLTQCDTCHLHYHLGCLSP----PLTRLPKKNKNFGWQC-SEC 595 (707)
T ss_pred eeeeeeccch------hhHHHhhcchhhceeeccccCC----ccccCcccccCcceee-ccc
Confidence 4799999863 5778899999999999999997 78888854 5999 889
No 99
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=96.15 E-value=0.0026 Score=72.58 Aligned_cols=108 Identities=31% Similarity=0.655 Sum_probs=71.8
Q ss_pred Ccccccccccc-----CCCceeecCCCCCcccccccCCC---CCCC-------CCccccCCCCCCC---CCC---cccc-
Q 003068 506 GGSDDMCHVCG-----DGENLLLCNGCPLAFHAACLDPL---LIPE-------SGWRCPNCRQGHS---SSM---SRSV- 563 (851)
Q Consensus 506 ~~~dd~C~vCg-----dgG~Ll~Cd~C~~afH~~Cl~~~---~vp~-------g~W~C~~C~~~~~---~ea---~dpI- 563 (851)
.....+|.||- +.|+++-||.|+-..|..|+|.. ++|. ..|||.-|..+.. ++. .+-|
T Consensus 116 pkk~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~P~CElCPn~~Gif 195 (707)
T KOG0957|consen 116 PKKAVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSLPHCELCPNRFGIF 195 (707)
T ss_pred cccceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCCCccccCCCcCCcc
Confidence 33445899995 46899999999999999999963 3332 4799999977433 221 0111
Q ss_pred ---cccCCc------------------------cCCC---CCccccccCCCCcCCCCccCCCceeecC--CCCCcccccc
Q 003068 564 ---DLKGGL------------------------EAPG---AEVGGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGC 611 (851)
Q Consensus 564 ---~l~r~~------------------------~~~~---~~~~~C~iC~~~~~~~~~~d~~~LL~Cd--qC~r~fHv~C 611 (851)
..-||+ .... ..-..|..|...-|++ -+..+.|| .|..+||+.|
T Consensus 196 KetDigrWvH~iCALYvpGVafg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced~~fAR----tGvci~CdaGMCk~YfHVTC 271 (707)
T KOG0957|consen 196 KETDIGRWVHAICALYVPGVAFGQTHTLCGVTLEEMDYSKFGAKTCSACEDKIFAR----TGVCIRCDAGMCKEYFHVTC 271 (707)
T ss_pred cccchhhHHHHHHHhhcCccccccccccccccHHHhhhhhhccchhccccchhhhh----cceeeeccchhhhhhhhhhH
Confidence 000110 0111 1124699999877654 45678898 8999999999
Q ss_pred cCCCCC
Q 003068 612 LRKNGL 617 (851)
Q Consensus 612 L~~~g~ 617 (851)
.+..|+
T Consensus 272 AQk~Gl 277 (707)
T KOG0957|consen 272 AQKLGL 277 (707)
T ss_pred Hhhhcc
Confidence 987765
No 100
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=96.12 E-value=0.0071 Score=67.30 Aligned_cols=87 Identities=21% Similarity=0.261 Sum_probs=69.2
Q ss_pred CCceecCeEEEEEEeCCEEEEeEEEEE----EcC---ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecc
Q 003068 730 SGQEFGGMYSVILTVKSVVVSAGLLRI----FGR---EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPA 802 (851)
Q Consensus 730 ~~~~~~Gfy~~vl~~~~~~V~aA~lri----~g~---~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A 802 (851)
+.+++.++|++ |.|.++++-..+-. +|. ..|-|-.||+.|+|||+|+-|+|+....+.-++.|+.-.+|.+
T Consensus 34 kil~~~n~~vi--~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~P 111 (389)
T COG4552 34 KILAEPNSYVI--YMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALHP 111 (389)
T ss_pred hhccCCcceEE--eehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEecc
Confidence 45677788865 88888865443321 143 2466788999999999999999999999999999999999877
Q ss_pred hhhHHHHHHhccCcEEcCH
Q 003068 803 AEKAESIWTKKFGFRKMSR 821 (851)
Q Consensus 803 ~~~A~~~w~~kfGF~~i~~ 821 (851)
. -.+||. ||||...+.
T Consensus 112 ~--s~~iYr-KfGye~asn 127 (389)
T COG4552 112 F--SGGIYR-KFGYEYASN 127 (389)
T ss_pred C--chhhHh-hccccccce
Confidence 6 367999 999988766
No 101
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.08 E-value=0.0011 Score=50.66 Aligned_cols=34 Identities=32% Similarity=0.977 Sum_probs=20.7
Q ss_pred CceeecCCCCCcccccccCCCCCCCC-CccccCCC
Q 003068 519 ENLLLCNGCPLAFHAACLDPLLIPES-GWRCPNCR 552 (851)
Q Consensus 519 G~Ll~Cd~C~~afH~~Cl~~~~vp~g-~W~C~~C~ 552 (851)
..|+.|+.|.-+.|+.|+|...++.+ .|+|..|+
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 46899999999999999999888877 89999883
No 102
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=95.83 E-value=0.027 Score=56.53 Aligned_cols=82 Identities=17% Similarity=0.217 Sum_probs=65.4
Q ss_pred EEE-eCCEEEEeEEEEEEc-----CceEEEeEeEeeccccccChhHHHHHHHHH-HHhhCCccEEEecch---hhHHHHH
Q 003068 741 ILT-VKSVVVSAGLLRIFG-----REVAELPLVATCREYQGKGCFQALFSCIER-LLCSLNVENLVLPAA---EKAESIW 810 (851)
Q Consensus 741 vl~-~~~~~V~aA~lri~g-----~~~AElp~vAt~~~~RgqG~gr~L~~~iE~-~l~~lgV~~LvL~A~---~~A~~~w 810 (851)
|.+ .+|++||-.....+. ..-.+|-.+||...||+.|++++||..-.+ +....+.+.+-|+.. ..|..+|
T Consensus 45 VA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY 124 (193)
T KOG3235|consen 45 VAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLY 124 (193)
T ss_pred EEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhh
Confidence 445 578999988877654 225789999999999999999999976444 455667788888876 5799999
Q ss_pred HhccCcEEcCHH
Q 003068 811 TKKFGFRKMSRE 822 (851)
Q Consensus 811 ~~kfGF~~i~~~ 822 (851)
++.+||.+.+-+
T Consensus 125 ~~tl~F~v~eve 136 (193)
T KOG3235|consen 125 KNTLGFVVCEVE 136 (193)
T ss_pred hhccceEEeecc
Confidence 999999988753
No 103
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.27 E-value=0.0087 Score=59.50 Aligned_cols=26 Identities=46% Similarity=1.103 Sum_probs=23.0
Q ss_pred cccccccCCCCCCCcccCCCCCcEECCCchh
Q 003068 606 EFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 636 (851)
Q Consensus 606 ~fHv~CL~~~g~~~L~e~P~g~WfCc~~C~~ 636 (851)
.||+.||+| +|.++|+|+|+| +.|..
T Consensus 1 g~H~~CL~P----pl~~~P~g~W~C-p~C~~ 26 (148)
T cd04718 1 GFHLCCLRP----PLKEVPEGDWIC-PFCEV 26 (148)
T ss_pred CcccccCCC----CCCCCCCCCcCC-CCCcC
Confidence 499999997 799999999999 77854
No 104
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.17 E-value=0.011 Score=58.91 Aligned_cols=24 Identities=46% Similarity=1.158 Sum_probs=21.7
Q ss_pred cccccccCCC--CCCCCCccccCCCC
Q 003068 530 AFHAACLDPL--LIPESGWRCPNCRQ 553 (851)
Q Consensus 530 afH~~Cl~~~--~vp~g~W~C~~C~~ 553 (851)
+||..||.|+ .+|+|+|+|+.|..
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~ 26 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEV 26 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcC
Confidence 5999999985 79999999999975
No 105
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=95.15 E-value=0.013 Score=73.45 Aligned_cols=56 Identities=25% Similarity=0.710 Sum_probs=44.2
Q ss_pred CccccccCCCCcCCCCccCCCceeecCCCCCcccccccCCCCCCCcccCCCCCcEECCCchhHHHHH
Q 003068 575 EVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIHAAL 641 (851)
Q Consensus 575 ~~~~C~iC~~~~~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~e~P~g~WfCc~~C~~i~~~L 641 (851)
.+..|.||.+++ ......++.||.|..++|..|.. ..-+|+|.|+| ..|-.-....
T Consensus 218 ~D~~C~iC~~~~----~~n~n~ivfCD~Cnl~VHq~Cyg------i~~ipeg~WlC-r~Cl~s~~~~ 273 (1051)
T KOG0955|consen 218 EDAVCCICLDGE----CQNSNVIVFCDGCNLAVHQECYG------IPFIPEGQWLC-RRCLQSPQRP 273 (1051)
T ss_pred CCccceeecccc----cCCCceEEEcCCCcchhhhhccC------CCCCCCCcEee-hhhccCcCcc
Confidence 346899999875 34568899999999999999996 34578999999 8886544433
No 106
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=95.10 E-value=0.06 Score=54.08 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=48.9
Q ss_pred eEEEeEeEeeccccccChhHHHHHHHHHHHhhCCcc---EEEecchhhHHHHHHhccCcEEc
Q 003068 761 VAELPLVATCREYQGKGCFQALFSCIERLLCSLNVE---NLVLPAAEKAESIWTKKFGFRKM 819 (851)
Q Consensus 761 ~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~---~LvL~A~~~A~~~w~~kfGF~~i 819 (851)
-+++--++|.|+||++|+|..||+.||+.....+.- .+|.-.-.-|+.+|+ +|||.+.
T Consensus 69 h~HvTAltVap~~Rrl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYk-kLGY~~Y 129 (173)
T KOG3234|consen 69 HGHVTALTVAPDYRRLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYK-KLGYSVY 129 (173)
T ss_pred eeEEEEEEechhHHHHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHH-hcCceEE
Confidence 477888999999999999999999999998877544 445555578999999 9999864
No 107
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=95.00 E-value=0.01 Score=70.12 Aligned_cols=51 Identities=31% Similarity=1.042 Sum_probs=42.1
Q ss_pred ccccccCCCCcCCCCccCCCceeecC--CCCCcccccccCCCCCCCcccCCCCCcEECCCchhH
Q 003068 576 VGGCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRI 637 (851)
Q Consensus 576 ~~~C~iC~~~~~~~~~~d~~~LL~Cd--qC~r~fHv~CL~~~g~~~L~e~P~g~WfCc~~C~~i 637 (851)
+++|.+|-+. .+..+..|+.|| .|.-+.|..|.. +.++|.|.||| +.|..-
T Consensus 5 VGGCCVCSDE----rGWaeNPLVYCDG~nCsVAVHQaCYG------IvqVPtGpWfC-rKCesq 57 (900)
T KOG0956|consen 5 VGGCCVCSDE----RGWAENPLVYCDGHNCSVAVHQACYG------IVQVPTGPWFC-RKCESQ 57 (900)
T ss_pred ccceeeecCc----CCCccCceeeecCCCceeeeehhcce------eEecCCCchhh-hhhhhh
Confidence 4789999753 344588999999 899999999996 67899999999 888553
No 108
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=94.91 E-value=0.22 Score=53.52 Aligned_cols=95 Identities=14% Similarity=0.223 Sum_probs=73.6
Q ss_pred ccCCCCceecCeEEEEEEe-CCEEEEeEEEEEE------------------------------cCceEEEeEeEeecccc
Q 003068 726 GRNISGQEFGGMYSVILTV-KSVVVSAGLLRIF------------------------------GREVAELPLVATCREYQ 774 (851)
Q Consensus 726 gr~~~~~~~~Gfy~~vl~~-~~~~V~aA~lri~------------------------------g~~~AElp~vAt~~~~R 774 (851)
+.++...|-..-|.++... +|++||++||... ...++|+=|+||.++||
T Consensus 45 ~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r 124 (241)
T TIGR03694 45 GLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFR 124 (241)
T ss_pred CCcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccHHHHhccccchhhcCccccCCCceEEeehheECHhHh
Confidence 4455556655566655543 5899999999752 13699999999999999
Q ss_pred cc--------C--------------------hhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCc--EEcCH
Q 003068 775 GK--------G--------------------CFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGF--RKMSR 821 (851)
Q Consensus 775 gq--------G--------------------~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF--~~i~~ 821 (851)
++ | +...|+.++-+.+...|+++++.-+-+....++. ++|+ +.+++
T Consensus 125 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~l~r~l~-r~G~~~~~lG~ 200 (241)
T TIGR03694 125 RRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALSSANGITHWYAIMEPRLARLLS-RFGIQFRQVGP 200 (241)
T ss_pred CCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHH-HhCCceEEcCC
Confidence 74 2 4567999999999999999999988888888887 9996 45554
No 109
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=94.71 E-value=0.25 Score=46.50 Aligned_cols=67 Identities=10% Similarity=-0.139 Sum_probs=58.6
Q ss_pred CeEEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch
Q 003068 736 GMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA 803 (851)
Q Consensus 736 Gfy~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~ 803 (851)
....++++.+|++||++..-. ..+.+.....+++++++..+.|..|+..+.+.+.+.|++.+-+...
T Consensus 70 ~~~l~~~~~~g~~va~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~g 136 (142)
T PF13480_consen 70 RLRLFVLYDGGEPVAFALGFR-HGGTLYYWYGGYDPEYRKYSPGRLLLWEAIRWAIERGLRYFDFGGG 136 (142)
T ss_pred CEEEEEEEECCEEEEEEEEEE-ECCEEEEEEEEECHhhHhCCHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 356667788999999997654 5568889999999999999999999999999999999999988765
No 110
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=94.50 E-value=0.0098 Score=77.11 Aligned_cols=52 Identities=35% Similarity=0.965 Sum_probs=45.4
Q ss_pred cccccCCCCcCCCCccCCCceeecCCCCCcccccccCCCCCCCcccCCCCCcEECCCchhHHH
Q 003068 577 GGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIHA 639 (851)
Q Consensus 577 ~~C~iC~~~~~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~e~P~g~WfCc~~C~~i~~ 639 (851)
..|.+|+..+ +...|+.|+.|.++||..|+++ .+..+|.++|+| +.|..-+.
T Consensus 1109 ~~c~~cr~k~------~~~~m~lc~~c~~~~h~~C~rp----~~~~~~~~dW~C-~~c~~e~~ 1160 (1404)
T KOG1245|consen 1109 ALCKVCRRKK------QDEKMLLCDECLSGFHLFCLRP----ALSSVPPGDWMC-PSCRKEHR 1160 (1404)
T ss_pred hhhhhhhhcc------cchhhhhhHhhhhhHHHHhhhh----hhccCCcCCccC-Cccchhhh
Confidence 5799998653 5678999999999999999997 688999999999 89987765
No 111
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=94.36 E-value=0.031 Score=64.28 Aligned_cols=51 Identities=16% Similarity=0.250 Sum_probs=47.1
Q ss_pred eccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEcCH
Q 003068 770 CREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMSR 821 (851)
Q Consensus 770 ~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i~~ 821 (851)
..++|+||||+.||+..|++|++-+.++|.+-+...+...|. ||||...+.
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~-k~GY~~~gp 509 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYR-KLGYELDGP 509 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHH-HhCccccCC
Confidence 478999999999999999999999999999888889999999 999998765
No 112
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=94.19 E-value=0.017 Score=66.70 Aligned_cols=43 Identities=37% Similarity=0.853 Sum_probs=36.4
Q ss_pred ccccccCC-----CceeecCCCCCcccccccCCC------CCCCCCccccCCCC
Q 003068 511 MCHVCGDG-----ENLLLCNGCPLAFHAACLDPL------LIPESGWRCPNCRQ 553 (851)
Q Consensus 511 ~C~vCgdg-----G~Ll~Cd~C~~afH~~Cl~~~------~vp~g~W~C~~C~~ 553 (851)
.|.+|..| ..||.|++|..-||+.|+.+. ..+...|||..|..
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~ 223 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNR 223 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhcc
Confidence 39999744 489999999999999999973 34678999999976
No 113
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=93.49 E-value=0.42 Score=49.30 Aligned_cols=92 Identities=18% Similarity=0.152 Sum_probs=68.4
Q ss_pred ccCCCCce-ecCeEEEEEEeCCEEEEeEEEEEE---------------------cCceEEEeEeEeecccccc------C
Q 003068 726 GRNISGQE-FGGMYSVILTVKSVVVSAGLLRIF---------------------GREVAELPLVATCREYQGK------G 777 (851)
Q Consensus 726 gr~~~~~~-~~Gfy~~vl~~~~~~V~aA~lri~---------------------g~~~AElp~vAt~~~~Rgq------G 777 (851)
|.++..+| ..-.|.+++. +|+++|++||... +.+++|+=|+|+.++.++. -
T Consensus 34 g~E~DqyD~~~~~ylv~~~-~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~ 112 (182)
T PF00765_consen 34 GMEIDQYDDPDAVYLVALD-DGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSP 112 (182)
T ss_dssp SEE--TTGCTT-EEEEEEE-TTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-T
T ss_pred CcEeeecCCCCCeEEEEEE-CCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccH
Confidence 44444443 3456777654 5999999999764 2689999999999885432 3
Q ss_pred hhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEc
Q 003068 778 CFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKM 819 (851)
Q Consensus 778 ~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i 819 (851)
+...|+.++-+.+.+.|++.++.-+..-.+.++. ++||...
T Consensus 113 ~~~~L~~~~~e~a~~~gi~~~v~V~~~~~~r~l~-r~G~~~~ 153 (182)
T PF00765_consen 113 VTMELLLGMVEFALSNGIRHIVGVVDPAMERILR-RAGWPVR 153 (182)
T ss_dssp HHHHHHHHHHHHHHCTT-SEEEEEEEHHHHHHHH-HCT-EEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEChHHHHHHH-HcCCceE
Confidence 6789999999999999999999888888899998 9999754
No 114
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=93.25 E-value=0.46 Score=49.13 Aligned_cols=82 Identities=26% Similarity=0.293 Sum_probs=60.0
Q ss_pred EEEEEEeCCEEEEeEEEEEEc-------CceEEEeEeEeeccccccChhHHHHHHHH-HHHhhCCccEEEecchhhHHHH
Q 003068 738 YSVILTVKSVVVSAGLLRIFG-------REVAELPLVATCREYQGKGCFQALFSCIE-RLLCSLNVENLVLPAAEKAESI 809 (851)
Q Consensus 738 y~~vl~~~~~~V~aA~lri~g-------~~~AElp~vAt~~~~RgqG~gr~L~~~iE-~~l~~lgV~~LvL~A~~~A~~~ 809 (851)
|.+++..-.++|+++.+-.+. ..+--+-+.-+.|+|||+|+++ |+..+. +.+.. +=...++.+...+..+
T Consensus 48 ~~~~~KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~k-l~~~~~~~~~~~-~~~N~~~~~~~~~~~~ 125 (181)
T PF06852_consen 48 VLTCLKGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMK-LQDDICMDELDS-VDDNSVAQGNVKMSNF 125 (181)
T ss_pred EEEEEcCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHH-HHHHHHHHHhcc-CCCceeeecCHHHHHH
Confidence 444444456788888774432 2377888888999999999996 555554 44555 3445677788899999
Q ss_pred HHhccCcEEcCH
Q 003068 810 WTKKFGFRKMSR 821 (851)
Q Consensus 810 w~~kfGF~~i~~ 821 (851)
|..-|||..++.
T Consensus 126 w~k~~G~~~~~h 137 (181)
T PF06852_consen 126 WHKMFGFDDYGH 137 (181)
T ss_pred HHHHhCCCCCcc
Confidence 999999998888
No 115
>smart00258 SAND SAND domain.
Probab=93.17 E-value=0.076 Score=46.98 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=41.4
Q ss_pred eCCeEEEcCCCCCCCccccchhhhhhhccc-cCCCCCCcccccCCCcHHHHHHH
Q 003068 245 NGGGYLCGCPLCNFSKQVVSAHEFEQHAGA-KTRHPNNHIYLENGKPIYSIIQE 297 (851)
Q Consensus 245 ~~~gi~C~C~~C~~~~~v~s~~~FE~HAGs-~~~~p~~~I~lenG~sL~~v~~~ 297 (851)
..+|+.+-|..+++ + -+||++||.|||. ++|.=-..|.. ||.+|+.+|+.
T Consensus 19 f~~G~~~kCI~~~~-~-~~TP~eFe~~~g~~~~K~WK~sIR~-~g~~Lr~L~~~ 69 (73)
T smart00258 19 FKCGISVKCIQYED-K-WFTPKEFEIEGGKGKSKDWKRSIRC-GGSSLRTLMEN 69 (73)
T ss_pred hhcCcccCCccCCC-E-EEChHHHHhhcCCcccCCcchheeE-CCccHHHHHHc
Confidence 34699999999987 5 8999999999995 57777777854 68999998865
No 116
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=92.63 E-value=0.056 Score=64.74 Aligned_cols=52 Identities=31% Similarity=0.800 Sum_probs=42.5
Q ss_pred CccccccCCCCcCCCCccCCCceeecCCCCCcccccccCCCCCCCcccCCCCCcEECCCchhH
Q 003068 575 EVGGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRI 637 (851)
Q Consensus 575 ~~~~C~iC~~~~~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~e~P~g~WfCc~~C~~i 637 (851)
+.-.|.+|+.+| ......|+.||.|.--.|..|.. +.++|++.|.| ..|...
T Consensus 270 edviCDvCrspD----~e~~neMVfCd~Cn~cVHqaCyG------Ile~p~gpWlC-r~Calg 321 (893)
T KOG0954|consen 270 EDVICDVCRSPD----SEEANEMVFCDKCNICVHQACYG------ILEVPEGPWLC-RTCALG 321 (893)
T ss_pred ccceeceecCCC----ccccceeEEeccchhHHHHhhhc------eeecCCCCeee-hhcccc
Confidence 345799999875 33478899999999999999986 66889999999 777543
No 117
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=92.51 E-value=0.05 Score=62.46 Aligned_cols=47 Identities=28% Similarity=0.844 Sum_probs=37.3
Q ss_pred cccccCCCCcCCCCccCCCceeecCCCCCcccccccCCCCCCCcccCCCCCcEECCCc
Q 003068 577 GGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDC 634 (851)
Q Consensus 577 ~~C~iC~~~~~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~e~P~g~WfCc~~C 634 (851)
+.|.+|...+ ..+..+++.||.|+-..|..|.. +.-+|+|.|+| +.|
T Consensus 194 ~~C~~c~~t~----~eN~naiVfCdgC~i~VHq~CYG------I~f~peG~WlC-rkC 240 (669)
T COG5141 194 DICTKCTSTH----NENSNAIVFCDGCEICVHQSCYG------IQFLPEGFWLC-RKC 240 (669)
T ss_pred hhhHhccccc----cCCcceEEEecCcchhhhhhccc------ceecCcchhhh-hhh
Confidence 4788888654 23467899999999999999986 44578999998 555
No 118
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=92.37 E-value=0.033 Score=72.45 Aligned_cols=48 Identities=40% Similarity=1.068 Sum_probs=41.4
Q ss_pred CccccccccccCC---CceeecCCCCCcccccccCC--CCCCCCCccccCCCC
Q 003068 506 GGSDDMCHVCGDG---ENLLLCNGCPLAFHAACLDP--LLIPESGWRCPNCRQ 553 (851)
Q Consensus 506 ~~~dd~C~vCgdg---G~Ll~Cd~C~~afH~~Cl~~--~~vp~g~W~C~~C~~ 553 (851)
......|.+|... ..++.|+.|.+.||..|+.| ..+|.|+|+|+.|+.
T Consensus 1105 s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~ 1157 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRK 1157 (1404)
T ss_pred ccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccch
Confidence 3455779999743 47999999999999999998 689999999999976
No 119
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=91.71 E-value=0.94 Score=47.67 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=70.4
Q ss_pred ccCCCCcee-cCeEEEEEEeCCEEEEeEEEEEE---------------------cCceEEEeEeEeecccc---ccC---
Q 003068 726 GRNISGQEF-GGMYSVILTVKSVVVSAGLLRIF---------------------GREVAELPLVATCREYQ---GKG--- 777 (851)
Q Consensus 726 gr~~~~~~~-~Gfy~~vl~~~~~~V~aA~lri~---------------------g~~~AElp~vAt~~~~R---gqG--- 777 (851)
|.+...+|- .-.|.+....+|++||+++|-.. ..+++|+=|+|++++++ +.+
T Consensus 42 g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~ 121 (207)
T PRK13834 42 GEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNAHPAMIESSRFCVDTALAEGRGGGQLH 121 (207)
T ss_pred CcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCCCCCCCEEEEeeeEEcccccccccccccC
Confidence 444454543 34566666678899999998322 25799999999999853 222
Q ss_pred -hhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcE--EcCH
Q 003068 778 -CFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFR--KMSR 821 (851)
Q Consensus 778 -~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~--~i~~ 821 (851)
+...|+.++-+.+...|+++++.-..+..+.++. ++||. .+++
T Consensus 122 ~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~-r~G~~~~~lG~ 167 (207)
T PRK13834 122 EATLTMFAGIIEWSMANGYTEIVTATDLRFERILA-RAGWPMQRLGE 167 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHH-HcCCCeEECCC
Confidence 5578999999999999999999877777778887 99964 4444
No 120
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=91.68 E-value=0.29 Score=49.96 Aligned_cols=66 Identities=12% Similarity=0.056 Sum_probs=52.0
Q ss_pred eEEEEEEeCCEEEEeEEEEEEcCceEEEe-----EeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchh
Q 003068 737 MYSVILTVKSVVVSAGLLRIFGREVAELP-----LVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAE 804 (851)
Q Consensus 737 fy~~vl~~~~~~V~aA~lri~g~~~AElp-----~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~ 804 (851)
.|-+|-. ++++||...||-.=++ ..++ --+|+|+.||+||++.++.-..+.++.||++.+.+-+..
T Consensus 70 ~y~~v~~-d~~ivG~i~lRh~Ln~-~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~ 140 (174)
T COG3981 70 TYWAVDE-DGQIVGFINLRHQLND-FLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDK 140 (174)
T ss_pred eEEEEec-CCcEEEEEEeeeecch-HHHhcCCcccceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4555545 8999999999964221 1122 246899999999999999999999999999999887763
No 121
>PF01342 SAND: SAND domain; InterPro: IPR000770 The SAND domain (named after Sp100, AIRE-1, NucP41/75, DEAF-1) is a conserved ~80 residue region found in a number of nuclear proteins, many of which function in chromatin-dependent transcriptional control. These include proteins linked to various human diseases, such as the Sp100 (Speckled protein 100 kDa), NUDR (Nuclear DEAF-1 related), GMEB (Glucocorticoid Modulatory Element Binding) proteins and AIRE-1 (Autoimmune regulator 1) proteins. Proteins containing the SAND domain have a modular structure; the SAND domain can be associated with a number of other modules, including the bromodomain, the PHD finger and the MYND finger. Because no SAND domain has been found in yeast, it is thought that the SAND domain could be restricted to animal phyla. Many SAND domain-containing proteins, including NUDR, DEAF-1 (Deformed epidermal autoregulatory factor-1) and GMEB, have been shown to bind DNA sequences specifically. The SAND domain has been proposed to mediate the DNA binding activity of these proteins [, ]. The resolution of the 3D structure of the SAND domain from Sp100b has revealed that it consists of a novel alpha/beta fold. The SAND domain adopts a compact fold consisting of a strongly twisted, five-stranded antiparallel beta-sheet with four alpha-helices packing against one side of the beta-sheet. The opposite side of the beta-sheet is solvent exposed. The beta-sheet and alpha-helical parts of the structure form two distinct regions. Multiple hydrophobic residues pack between these regions to form a structural core. A conserved KDWK sequence motif is found within the alpha-helical, positively charged surface patch. The DNA binding surface has been mapped to the alpha-helical region encompassing the KDWK motif [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1OQJ_B 1UFN_A 1H5P_A.
Probab=90.25 E-value=0.081 Score=47.82 Aligned_cols=55 Identities=24% Similarity=0.468 Sum_probs=38.4
Q ss_pred eeEEEe-----CCeEEEcCCCCCCCccccchhhhhhhcccc-CCCCCCcccccCCCcHHHHHHH
Q 003068 240 LDGIVN-----GGGYLCGCPLCNFSKQVVSAHEFEQHAGAK-TRHPNNHIYLENGKPIYSIIQE 297 (851)
Q Consensus 240 l~G~i~-----~~gi~C~C~~C~~~~~v~s~~~FE~HAGs~-~~~p~~~I~lenG~sL~~v~~~ 297 (851)
++|++- ..|+...|-.+++ + -+||.+||.|||.. +|+=-..|.. +|.+|..+|++
T Consensus 18 ~~G~L~~~k~~~~g~~~kCI~~~g-~-~~TP~eFE~~~G~~~sK~WK~SIr~-~g~~L~~li~~ 78 (82)
T PF01342_consen 18 VKGTLYKKKFVKQGICGKCIQCEG-R-WFTPSEFERHGGKGSSKDWKRSIRC-GGEPLGKLIEK 78 (82)
T ss_dssp EEEEEEHHHH-TTGTTSS-EEETT-E-EE-HHHHHHHHTTCTCS-HHHHSEE-TTEEHHHHHHT
T ss_pred eEEEEEHHHhhcccccCceEeeCC-c-EECHHHHHhhcCcccCCCCCccEEE-CCEEHHHHHhh
Confidence 466665 3455566666674 4 69999999999987 4445667887 89999988864
No 122
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=88.98 E-value=0.37 Score=45.11 Aligned_cols=33 Identities=39% Similarity=0.854 Sum_probs=28.1
Q ss_pred cccccCCCCcCCCCccCCCceeecCC--CCCcccccccCCCCC
Q 003068 577 GGCVICRSHDFSAATFDDRTVIYCDQ--CEKEFHVGCLRKNGL 617 (851)
Q Consensus 577 ~~C~iC~~~~~~~~~~d~~~LL~Cdq--C~r~fHv~CL~~~g~ 617 (851)
..|.+|++. .+..++|.. |.++||+.|....|.
T Consensus 56 ~~C~iC~~~--------~G~~i~C~~~~C~~~fH~~CA~~~g~ 90 (110)
T PF13832_consen 56 LKCSICGKS--------GGACIKCSHPGCSTAFHPTCARKAGL 90 (110)
T ss_pred CcCcCCCCC--------CceeEEcCCCCCCcCCCHHHHHHCCC
Confidence 489999975 578999998 999999999876654
No 123
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=88.85 E-value=0.079 Score=40.62 Aligned_cols=33 Identities=33% Similarity=1.116 Sum_probs=17.3
Q ss_pred CceeecCCCCCcccccccCCCCCCCcccCCCC-CcEECCCc
Q 003068 595 RTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKD-KWFCCDDC 634 (851)
Q Consensus 595 ~~LL~CdqC~r~fHv~CL~~~g~~~L~e~P~g-~WfCc~~C 634 (851)
+.||.|+.|.-..|..|..- ...|.+ .|+| .-|
T Consensus 2 n~ll~C~~C~v~VH~~CYGv------~~~~~~~~W~C-~~C 35 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGV------SEVPDGDDWLC-DRC 35 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-------SS--SS------HHH
T ss_pred CceEEeCCCCCcCChhhCCc------ccCCCCCcEEC-CcC
Confidence 46899999999999999863 334444 6999 544
No 124
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=88.50 E-value=1.1 Score=43.87 Aligned_cols=62 Identities=15% Similarity=0.223 Sum_probs=47.1
Q ss_pred eEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecch----hhHHHHHHhccCcEEcCHHHHHh
Q 003068 765 PLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAA----EKAESIWTKKFGFRKMSRERLLK 826 (851)
Q Consensus 765 p~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~----~~A~~~w~~kfGF~~i~~~~~~~ 826 (851)
-+|.|-...||.|.+|+|..-+-+.+...|..+|++..- ..|...+-..|||..+++.++..
T Consensus 88 DRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ihg 153 (167)
T COG3818 88 DRVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATIHG 153 (167)
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEEec
Confidence 344445567999999999999999999999999987543 23444444499999999865443
No 125
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=88.04 E-value=1 Score=42.16 Aligned_cols=48 Identities=23% Similarity=0.240 Sum_probs=41.3
Q ss_pred EeCCEEEEeEEEEEEc--CceEEEeEeEeeccccccChhHHHHHHHHHHH
Q 003068 743 TVKSVVVSAGLLRIFG--REVAELPLVATCREYQGKGCFQALFSCIERLL 790 (851)
Q Consensus 743 ~~~~~~V~aA~lri~g--~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l 790 (851)
|.++...++|.+..-+ .+++-|-.+||.+..||+|+++.|+.+|-+..
T Consensus 14 y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d~ 63 (99)
T cd04264 14 YLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRDF 63 (99)
T ss_pred EEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 6667788888886544 58999999999999999999999999998764
No 126
>KOG2752 consensus Uncharacterized conserved protein, contains N-recognin-type Zn-finger [General function prediction only]
Probab=83.15 E-value=1.1 Score=49.52 Aligned_cols=101 Identities=20% Similarity=0.365 Sum_probs=63.7
Q ss_pred cccccc-CCCceeecCCCCCcccccccCCCCCCCCCccccCCCCCCCCCCcccccccCCccCC-C---CCc----ccccc
Q 003068 511 MCHVCG-DGENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQGHSSSMSRSVDLKGGLEAP-G---AEV----GGCVI 581 (851)
Q Consensus 511 ~C~vCg-dgG~Ll~Cd~C~~afH~~Cl~~~~vp~g~W~C~~C~~~~~~ea~dpI~l~r~~~~~-~---~~~----~~C~i 581 (851)
.|-.|. +++....|-.|.-.+|-.-........+++.|--|..+.++-+-++ .+....+ . +++ ..| .
T Consensus 57 sClTC~P~~~~agvC~~C~~~CH~~H~lveL~tKR~FrCDCg~sk~g~~sc~l---~~~~~~~n~~N~YNhNfqG~~C-~ 132 (345)
T KOG2752|consen 57 SCLTCTPAPEMAGVCYACSLSCHDGHELVELYTKRNFRCDCGNSKFGRCSCNL---LEDKDAENSENLYNHNFQGLFC-K 132 (345)
T ss_pred EeecccCChhhceeEEEeeeeecCCceeeeccccCCccccccccccccccccc---ccccccccchhhhhhhhcceeE-E
Confidence 377776 4558888999988888776666666678898888766444322111 1111111 1 111 133 5
Q ss_pred CCCCcCCCCccCCCceeecCCCCCccc-ccccCCC
Q 003068 582 CRSHDFSAATFDDRTVIYCDQCEKEFH-VGCLRKN 615 (851)
Q Consensus 582 C~~~~~~~~~~d~~~LL~CdqC~r~fH-v~CL~~~ 615 (851)
|..++.......++.|++|--|+-||| .+|++..
T Consensus 133 Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~~~ 167 (345)
T KOG2752|consen 133 CDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQAK 167 (345)
T ss_pred ecCCCCCccccccceeeeEEeccchhcccccCccc
Confidence 666554333334789999999999999 8998753
No 127
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=82.45 E-value=2.5 Score=42.45 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=43.5
Q ss_pred eEEEeEeEeeccccccChhHHHHHHHHHHHhh-CCccEEEecc--h-hhHHHHHHhccCcEEcCH
Q 003068 761 VAELPLVATCREYQGKGCFQALFSCIERLLCS-LNVENLVLPA--A-EKAESIWTKKFGFRKMSR 821 (851)
Q Consensus 761 ~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~-lgV~~LvL~A--~-~~A~~~w~~kfGF~~i~~ 821 (851)
++|+..+--.|..||+|||+..+.++...+.. +++.+...-. + .-.+.++. ||+|..+--
T Consensus 107 ~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFk-k~~f~q~~~ 170 (185)
T KOG4135|consen 107 TGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFK-KFLFTQVFY 170 (185)
T ss_pred eeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHH-Hhhheeeee
Confidence 57788888899999999999999988887654 4555444433 2 34456777 999986543
No 128
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=80.72 E-value=8.3 Score=40.79 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=68.2
Q ss_pred ecCeEEEEEEeCCEEEEeEEEEEE---------------------cCceEEEeEeEeec--cccccC----hhHHHHHHH
Q 003068 734 FGGMYSVILTVKSVVVSAGLLRIF---------------------GREVAELPLVATCR--EYQGKG----CFQALFSCI 786 (851)
Q Consensus 734 ~~Gfy~~vl~~~~~~V~aA~lri~---------------------g~~~AElp~vAt~~--~~RgqG----~gr~L~~~i 786 (851)
..--|.+.+..+|+++|++||-.. ..+++|.-|+|+.+ .-|++| ....||..+
T Consensus 50 ~~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ 129 (209)
T COG3916 50 LDTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGM 129 (209)
T ss_pred CCceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHH
Confidence 345688877889999999998653 25899999999998 666666 467899999
Q ss_pred HHHHhhCCccEEEecchhhHHHHHHhccCcE
Q 003068 787 ERLLCSLNVENLVLPAAEKAESIWTKKFGFR 817 (851)
Q Consensus 787 E~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~ 817 (851)
.+.+...|+.+|+.=+..-.+.+.. +.||.
T Consensus 130 ie~a~~~G~~~IvtVt~~~meril~-r~Gw~ 159 (209)
T COG3916 130 IEYALARGITGIVTVTDTGMERILR-RAGWP 159 (209)
T ss_pred HHHHHHcCCceEEEEEchHHHHHHH-HcCCC
Confidence 9999999999999888877777777 77774
No 129
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=80.71 E-value=4.6 Score=44.88 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=63.3
Q ss_pred EEEEE-eCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHH--HHHhccC
Q 003068 739 SVILT-VKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAES--IWTKKFG 815 (851)
Q Consensus 739 ~~vl~-~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~--~w~~kfG 815 (851)
.++++ .+|++||++.+...++ .+.....++.+++|..+-+-.|+-.+.+.+.+.|++++-+.....-.+ -|+.+||
T Consensus 197 l~~a~~~~g~~va~~l~~~~~~-~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~G 275 (330)
T TIGR03019 197 VLTVRLGDGVVASAVLSFYFRD-EVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNWG 275 (330)
T ss_pred EEEEEeCCCCEEEEEEEEEeCC-EEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcCC
Confidence 34456 6899999888765544 455558889999999999999999999999999999999987532223 3666889
Q ss_pred cEEcCH
Q 003068 816 FRKMSR 821 (851)
Q Consensus 816 F~~i~~ 821 (851)
|+.+.-
T Consensus 276 ~~~~~l 281 (330)
T TIGR03019 276 FEPQPL 281 (330)
T ss_pred Ceeccc
Confidence 987653
No 130
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=80.43 E-value=3.2 Score=38.93 Aligned_cols=48 Identities=21% Similarity=0.159 Sum_probs=38.1
Q ss_pred EeCCEEEEeEEEEEEc-CceEEEeEeEeeccccccChhHHHHHHHHHHH
Q 003068 743 TVKSVVVSAGLLRIFG-REVAELPLVATCREYQGKGCFQALFSCIERLL 790 (851)
Q Consensus 743 ~~~~~~V~aA~lri~g-~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l 790 (851)
|.++..=++|.+..-. .+++-|-.+||.+..||+|+++.|+.+|-+..
T Consensus 15 y~~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~ 63 (99)
T cd04265 15 YLSEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF 63 (99)
T ss_pred EEeCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 4455555666665433 47999999999999999999999999998765
No 131
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=79.16 E-value=3.1 Score=42.74 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=46.2
Q ss_pred eEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccC
Q 003068 761 VAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFG 815 (851)
Q Consensus 761 ~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfG 815 (851)
+||+-+.||+++.+|.|+++.+ ..+--.|++|||+--+.--.......++ +|+
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~-R~~ 137 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVE-RLC 137 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHH-HHh
Confidence 7999999999999999999976 6999999999999888777766677777 776
No 132
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=78.53 E-value=12 Score=36.54 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=58.4
Q ss_pred EEEEeCCEEEEeEEEEE--E-----cCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHh
Q 003068 740 VILTVKSVVVSAGLLRI--F-----GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTK 812 (851)
Q Consensus 740 ~vl~~~~~~V~aA~lri--~-----g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~ 812 (851)
++...+|.+||-|.+.- + +-.++|+=. ..-|||+|+||+..+.|-.....+ ..-.+++--.-|..||+
T Consensus 40 ~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFI---i~k~~~~GvGR~aaK~If~~~~g~-w~Va~i~EN~PA~~fwK- 114 (143)
T COG5628 40 WLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFI---VRKHRRRGVGRAAAKAIFGSAWGV-WQVATVRENTPARAFWK- 114 (143)
T ss_pred eEEEECCceeeeeeeecccCCCCcccccchheEe---eehhhccchhHHHHHHHHHHhhce-EEEEEeccCChhHHHHH-
Confidence 34466889999888732 2 234555444 458999999999999998877543 45678888899999999
Q ss_pred ccCcEE-cCHHHHHhhh
Q 003068 813 KFGFRK-MSRERLLKYQ 828 (851)
Q Consensus 813 kfGF~~-i~~~~~~~~~ 828 (851)
++-+.- +..++.+..+
T Consensus 115 ~~~~t~~i~~E~r~d~~ 131 (143)
T COG5628 115 RVAETYPVVEEDRQDAR 131 (143)
T ss_pred hhhcccccchhhhhccc
Confidence 766653 3334444443
No 133
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=75.42 E-value=1.8 Score=36.34 Aligned_cols=30 Identities=30% Similarity=0.974 Sum_probs=26.2
Q ss_pred ccccccccC----CCceeecCCCCCcccccccCC
Q 003068 509 DDMCHVCGD----GENLLLCNGCPLAFHAACLDP 538 (851)
Q Consensus 509 dd~C~vCgd----gG~Ll~Cd~C~~afH~~Cl~~ 538 (851)
...|.+|++ +++++.|..|...||..|...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 457999984 789999999999999999854
No 134
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=74.55 E-value=1.8 Score=54.76 Aligned_cols=45 Identities=24% Similarity=0.760 Sum_probs=39.1
Q ss_pred cccccCCCCcCCCCccCCCceeecCCCCCcccccccCCCCCCCcccCCCCCcEECCCch
Q 003068 577 GGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCN 635 (851)
Q Consensus 577 ~~C~iC~~~~~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~e~P~g~WfCc~~C~ 635 (851)
+.|.+|.+ .+.+++|..|++.||..|..+ ++.+.|...|-| ..|.
T Consensus 345 dhcrf~~d---------~~~~lc~Et~prvvhlEcv~h----P~~~~~s~~~e~-evc~ 389 (1414)
T KOG1473|consen 345 DHCRFCHD---------LGDLLCCETCPRVVHLECVFH----PRFAVPSAFWEC-EVCN 389 (1414)
T ss_pred ccccccCc---------ccceeecccCCceEEeeecCC----ccccCCCccchh-hhhh
Confidence 47999984 568999999999999999986 788899999999 6665
No 135
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=74.04 E-value=3.6 Score=46.22 Aligned_cols=50 Identities=14% Similarity=0.207 Sum_probs=42.7
Q ss_pred cccccChhHHHHHHHHHHHhh-CCccEEEecchhhHHHHHHhccCcEEcCHH
Q 003068 772 EYQGKGCFQALFSCIERLLCS-LNVENLVLPAAEKAESIWTKKFGFRKMSRE 822 (851)
Q Consensus 772 ~~RgqG~gr~L~~~iE~~l~~-lgV~~LvL~A~~~A~~~w~~kfGF~~i~~~ 822 (851)
.||.||||..||+..|+.|++ .|-.++-+-+.......|. ||||..-++-
T Consensus 498 KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~-klGY~LdGPY 548 (554)
T KOG2535|consen 498 KFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYR-KLGYELDGPY 548 (554)
T ss_pred hhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHH-hhCeeecChh
Confidence 689999999999999999985 6777787777778888888 9999987653
No 136
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=69.63 E-value=2.1 Score=38.43 Aligned_cols=33 Identities=39% Similarity=0.900 Sum_probs=26.9
Q ss_pred cccccCCCCcCCCCccCCCceeecCC--CCCcccccccCCCCC
Q 003068 577 GGCVICRSHDFSAATFDDRTVIYCDQ--CEKEFHVGCLRKNGL 617 (851)
Q Consensus 577 ~~C~iC~~~~~~~~~~d~~~LL~Cdq--C~r~fHv~CL~~~g~ 617 (851)
..|.+|++. .+..+.|.. |.+.||+.|....+.
T Consensus 37 ~~C~~C~~~--------~Ga~i~C~~~~C~~~fH~~CA~~~~~ 71 (90)
T PF13771_consen 37 LKCSICKKK--------GGACIGCSHPGCSRSFHVPCARKAGC 71 (90)
T ss_pred CCCcCCCCC--------CCeEEEEeCCCCCcEEChHHHccCCe
Confidence 379999964 367899985 999999999886654
No 137
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=69.31 E-value=5 Score=46.68 Aligned_cols=64 Identities=22% Similarity=0.504 Sum_probs=39.4
Q ss_pred ccccCCCCcCCCCccCCCceeecCCCCCcccccccCCCCCCC----ccc---CCCCCcEECCCchhHH---HHHhhhh
Q 003068 578 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCD----LKE---IPKDKWFCCDDCNRIH---AALQDFV 645 (851)
Q Consensus 578 ~C~iC~~~~~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~----L~e---~P~g~WfCc~~C~~i~---~~LqkLv 645 (851)
.|.+|.+-|++. ++-.-|.||-|.-|-|..|.-.+++.- ... ..+..++| .-|.+.. .-+.+.+
T Consensus 130 ~C~iC~kfD~~~---n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C-~~C~~~seLlG~vk~vf 203 (446)
T PF07227_consen 130 MCCICSKFDDNK---NTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHC-RACGKTSELLGFVKKVF 203 (446)
T ss_pred CccccCCcccCC---CCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEc-cCCCChhhHHHHHHHHH
Confidence 899999876543 445678999999999999964333211 111 11234444 9997643 4444443
No 138
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=67.63 E-value=23 Score=34.74 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=51.9
Q ss_pred CeEEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEe
Q 003068 736 GMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 800 (851)
Q Consensus 736 Gfy~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL 800 (851)
|-+-+-.+.+|++||+|.+-+..+.+.-|=.+- +|++...++|...+-.-.++++++|.+.+-|
T Consensus 38 ~t~~~~~~~~~kLiav~v~D~l~~glSaVY~fy-DPd~~~~SlG~~~iL~eI~~a~~~~l~y~YL 101 (128)
T PF04377_consen 38 GTYHLEYRLDGKLIAVAVVDILPDGLSAVYTFY-DPDYSKRSLGTYSILREIELARELGLPYYYL 101 (128)
T ss_pred CCEEEEEEeCCeEEEEEEeecccchhhheeeee-CCCccccCcHHHHHHHHHHHHHHcCCCEEee
Confidence 333444468999999999998877765555554 8999999999999999999999999999884
No 139
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=66.65 E-value=4.6 Score=35.71 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=23.9
Q ss_pred EEeEeEeeccccccChhHHHHHHHHHH
Q 003068 763 ELPLVATCREYQGKGCFQALFSCIERL 789 (851)
Q Consensus 763 Elp~vAt~~~~RgqG~gr~L~~~iE~~ 789 (851)
-|.+|=|.+.+|++|++++||+++-+.
T Consensus 7 GI~RIWV~~~~RR~GIAt~Lld~ar~~ 33 (70)
T PF13880_consen 7 GISRIWVSPSHRRKGIATRLLDAAREN 33 (70)
T ss_pred EeEEEEeChhhhhhhHHHHHHHHHHHh
Confidence 377888999999999999999998765
No 140
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=65.74 E-value=6 Score=46.67 Aligned_cols=48 Identities=27% Similarity=0.540 Sum_probs=39.6
Q ss_pred CCccccccccccCCCceeecCCCCCcccccccCCCCCCCCCccccCCCC
Q 003068 505 TGGSDDMCHVCGDGENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQ 553 (851)
Q Consensus 505 ~~~~dd~C~vCgdgG~Ll~Cd~C~~afH~~Cl~~~~vp~g~W~C~~C~~ 553 (851)
...+.+.|.+|.++|.+++|+.+..++|..|... ..+...|.|..|..
T Consensus 85 ~~~~~~~c~vc~~ggs~v~~~s~~~~~~r~c~~~-~~~~c~~~~~d~~~ 132 (463)
T KOG1081|consen 85 PKIEPSECFVCFKGGSLVTCKSRIQAPHRKCKPA-QLEKCSKRCTDCRA 132 (463)
T ss_pred cCCCcchhccccCCCccceeccccccccccCcCc-cCcccccCCcceee
Confidence 3566789999999999999999999999999865 35667788777754
No 141
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=65.37 E-value=7.9 Score=42.85 Aligned_cols=65 Identities=23% Similarity=0.349 Sum_probs=39.4
Q ss_pred hhHHhhccCCCCCceEEEeecC--CcceeeEEEeC------CeEEEcCCCCCCCccccchhhhhhhcccc-CCCCCCcc
Q 003068 214 NVKKLLSTGILDGACVKYISTS--RERQLDGIVNG------GGYLCGCPLCNFSKQVVSAHEFEQHAGAK-TRHPNNHI 283 (851)
Q Consensus 214 ~~~~ll~tg~l~g~~V~y~~~~--~~~~l~G~i~~------~gi~C~C~~C~~~~~v~s~~~FE~HAGs~-~~~p~~~I 283 (851)
+...-..+.+++.+|-.+-... ......|++-. --|.|-|. |+ -+||.+|=.|||.. .-||-.||
T Consensus 210 ~~~~~~~~~~~~~mp~v~t~g~gpng~~i~g~ly~y~~~~~v~i~c~ch---g~--~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 210 NSGGDGSRNMMEDMPCVSTTGDGPNGKRIEGFLYKYGKGEEVRIVCVCH---GS--FLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred cccccccccccccCCceeeccCCCCCceeeEEEEEecCCCeEEEEEEec---CC--CCCHHHHHHhcCCCCcCCchhcc
Confidence 3333344445555554333221 12334554432 24788886 34 59999999999987 78998888
No 142
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=63.28 E-value=29 Score=36.39 Aligned_cols=33 Identities=24% Similarity=0.159 Sum_probs=26.2
Q ss_pred EEEeEeEeeccccccChhHHHHHHHHHHHhhCC
Q 003068 762 AELPLVATCREYQGKGCFQALFSCIERLLCSLN 794 (851)
Q Consensus 762 AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lg 794 (851)
--|--|-|.|.||++|||+.|++.-=.+++.-|
T Consensus 81 ~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e~ 113 (188)
T PF01853_consen 81 NNLSCILTLPPYQRKGYGRFLIDFSYELSRREG 113 (188)
T ss_dssp EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHTT
T ss_pred eeEeehhhcchhhhcchhhhhhhhHHHHhhccC
Confidence 467779999999999999999998766666544
No 143
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=61.28 E-value=4.9 Score=33.79 Aligned_cols=38 Identities=26% Similarity=0.686 Sum_probs=29.9
Q ss_pred cccccCCCCcCCCCccCCCceeecCCCCCcccccccCCCCCCC
Q 003068 577 GGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCD 619 (851)
Q Consensus 577 ~~C~iC~~~~~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~ 619 (851)
..|.+|++.- ++++.+++|..|..-||-.|....|...
T Consensus 6 ~~C~~Cg~~~-----~~~dDiVvCp~CgapyHR~C~~~~g~C~ 43 (54)
T PF14446_consen 6 CKCPVCGKKF-----KDGDDIVVCPECGAPYHRDCWEKAGGCI 43 (54)
T ss_pred ccChhhCCcc-----cCCCCEEECCCCCCcccHHHHhhCCceE
Confidence 3799999752 2478899999999999999987655443
No 144
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=60.81 E-value=16 Score=33.73 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=21.3
Q ss_pred CceEEEeEeEeeccccccChhHHHH
Q 003068 759 REVAELPLVATCREYQGKGCFQALF 783 (851)
Q Consensus 759 ~~~AElp~vAt~~~~RgqG~gr~L~ 783 (851)
..++||-++||.++||+...-..|.
T Consensus 76 ~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 76 RRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CcEEEeehheECHhHCCChHHHHHh
Confidence 3689999999999999998777664
No 145
>PRK14852 hypothetical protein; Provisional
Probab=58.66 E-value=25 Score=45.08 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=54.9
Q ss_pred cCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEcCHH
Q 003068 758 GREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMSRE 822 (851)
Q Consensus 758 g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i~~~ 822 (851)
|..++|+-++|++++.|.+=+--.|+..+-..+...++..+++---+.=..||++-|||+.+++.
T Consensus 118 Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~VnPkH~~FY~r~l~f~~ig~~ 182 (989)
T PRK14852 118 GRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVNPKHVKFYTDIFLFKPFGEV 182 (989)
T ss_pred CCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEECcchHHHHHHHhCCcccccc
Confidence 45799999999988777766555777777666778899999999999999999999999999863
No 146
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=58.47 E-value=4.2 Score=37.23 Aligned_cols=45 Identities=33% Similarity=0.691 Sum_probs=27.5
Q ss_pred cccccccccC-----------CC---ceeecCCCCCcccccccCCC-CCCCCCccccCCCC
Q 003068 508 SDDMCHVCGD-----------GE---NLLLCNGCPLAFHAACLDPL-LIPESGWRCPNCRQ 553 (851)
Q Consensus 508 ~dd~C~vCgd-----------gG---~Ll~Cd~C~~afH~~Cl~~~-~vp~g~W~C~~C~~ 553 (851)
+|+.|.||.. +| .++.+ .|...||..|+.-. ......=.||.|+.
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~~~~~~CPmCR~ 79 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQSSKGQCPMCRQ 79 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeec-cCccHHHHHHHHHHHccccCCCCCCCcCC
Confidence 3677777752 22 34443 49999999998742 11123447888864
No 147
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=57.55 E-value=6.9 Score=43.32 Aligned_cols=32 Identities=44% Similarity=0.771 Sum_probs=29.4
Q ss_pred ceecCCCCCccCccccccccCCcccCCCCcee
Q 003068 451 GIVCDCCNKEISPSQFEAHAGMAARRQPYRHI 482 (851)
Q Consensus 451 gI~C~cC~~~~Sps~FE~hAG~~~rr~Py~~I 482 (851)
.|+|.|=+.-+||.+|-.|||...-.+|..||
T Consensus 252 ~i~c~chg~~~~~~efv~h~~~~~~~~p~~hi 283 (284)
T PF07897_consen 252 RIVCVCHGSFLSPAEFVKHAGGGDVANPLRHI 283 (284)
T ss_pred EEEEEecCCCCCHHHHHHhcCCCCcCCchhcc
Confidence 58999999999999999999998888998887
No 148
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=56.46 E-value=31 Score=35.26 Aligned_cols=49 Identities=14% Similarity=0.220 Sum_probs=39.9
Q ss_pred eEEEEEEcC--ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEE
Q 003068 751 AGLLRIFGR--EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLV 799 (851)
Q Consensus 751 aA~lri~g~--~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~Lv 799 (851)
.+.+||.+. .++||=++++++..|.+++.=.|+.+|=+.+...||-.-+
T Consensus 98 p~~irv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~gI~qAv 148 (162)
T PF01233_consen 98 PATIRVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQAV 148 (162)
T ss_dssp EEEEEETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EEE
T ss_pred eEEEEEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhcCceeee
Confidence 356777665 6899999999999999999999999999999988886544
No 149
>PRK00756 acyltransferase NodA; Provisional
Probab=55.78 E-value=19 Score=36.92 Aligned_cols=61 Identities=30% Similarity=0.329 Sum_probs=44.8
Q ss_pred EEEEEeC-CEEEEeEEEEEE---cC---ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEe
Q 003068 739 SVILTVK-SVVVSAGLLRIF---GR---EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 800 (851)
Q Consensus 739 ~~vl~~~-~~~V~aA~lri~---g~---~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL 800 (851)
-++.|+. |...-.+.||-| |+ =+||+-+.||+++..|+|++..+ .++--.|++|||.--+-
T Consensus 56 RaIgyD~~GVaAH~G~LRRFIkVg~vDlLVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~FG 123 (196)
T PRK00756 56 RAIAYDSHGVAAHMGLLRRFIKVGEVDLLVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAFG 123 (196)
T ss_pred EEEeecCccHhHhHHHHhhhheecccceeEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeecc
Confidence 3455643 444444444443 22 37999999999999999999876 68999999999997653
No 150
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=55.09 E-value=60 Score=35.29 Aligned_cols=57 Identities=7% Similarity=-0.017 Sum_probs=47.8
Q ss_pred EeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEe
Q 003068 743 TVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL 800 (851)
Q Consensus 743 ~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL 800 (851)
+.+|++||+|.+-+..+.+--|=.+- +|++-.+++|...+-.-.++++++|.+.+-|
T Consensus 150 ~~~g~LiaVav~D~l~d~lSAVY~Fy-DPd~~~~SLG~~~iL~qI~~ak~~gl~y~YL 206 (240)
T PRK01305 150 RGDGKLVAVAVTDVLDDGLSAVYTFY-DPDEEHRSLGTFAILWQIELAKRLGLPYVYL 206 (240)
T ss_pred EeCCeEEEEEEEeccCCceeeEEEee-CCCccccCCHHHHHHHHHHHHHHcCCCeEee
Confidence 47899999999998888876664443 8889888899888888889999999998874
No 151
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=53.77 E-value=2.9 Score=34.17 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=22.9
Q ss_pred cchhhhhhhhccccchhhhhhhHhHHHHHHh
Q 003068 675 MNDVQWQMLKKAQCFEEKEKSLLSSATAIFR 705 (851)
Q Consensus 675 ~~~vkW~lLs~~~~swe~~~~lLa~Al~If~ 705 (851)
+|+|+|+.+++.+++|++...+...+-.++.
T Consensus 20 ~ylVkW~g~~~~~~tWe~~~~l~~~~~~li~ 50 (55)
T PF00385_consen 20 EYLVKWKGYPYSENTWEPEENLKNCFPELIE 50 (55)
T ss_dssp EEEEEETTSSGGGEEEEEGGGCSSHCHHHHH
T ss_pred EEEEEECCCCCCCCeEeeHHHHhHhhHHHHH
Confidence 7999999999999999965544444344443
No 152
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=53.66 E-value=4.7 Score=46.45 Aligned_cols=35 Identities=20% Similarity=0.544 Sum_probs=22.8
Q ss_pred ccccCCCCcCCCCccCCCceeecCCCCCcccccccCC
Q 003068 578 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRK 614 (851)
Q Consensus 578 ~C~iC~~~~~~~~~~d~~~LL~CdqC~r~fHv~CL~~ 614 (851)
.|.+|+++-.-..+.++- ++=-.=+|-||+.|.+.
T Consensus 396 rCs~C~~PI~P~~G~~et--vRvvamdr~fHv~CY~C 430 (468)
T KOG1701|consen 396 RCSVCGNPILPRDGKDET--VRVVAMDRDFHVNCYKC 430 (468)
T ss_pred chhhccCCccCCCCCcce--EEEEEccccccccceeh
Confidence 699999875444333333 33334478999999864
No 153
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=52.37 E-value=9.4 Score=39.11 Aligned_cols=59 Identities=20% Similarity=0.536 Sum_probs=37.2
Q ss_pred ccccCCCCcCCCCccCCCceeecCCCCCcccccccCCCCCC--CcccCCCCCc--EECCCchhHHHH
Q 003068 578 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLC--DLKEIPKDKW--FCCDDCNRIHAA 640 (851)
Q Consensus 578 ~C~iC~~~~~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~--~L~e~P~g~W--fCc~~C~~i~~~ 640 (851)
.|..|+..+. ...-+.|+.|..|--+||..||.++..- ....+..+.+ .| +.|..++.+
T Consensus 1 ~C~~C~~~g~---~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQC-r~Cig~~~k 63 (175)
T PF15446_consen 1 TCDTCGYEGD---DRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQC-RRCIGIAHK 63 (175)
T ss_pred CcccccCCCC---CccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEec-hhhcChhhc
Confidence 3677764331 2246799999999999999999765321 1233444444 45 677666543
No 154
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=51.80 E-value=32 Score=38.26 Aligned_cols=32 Identities=28% Similarity=0.187 Sum_probs=26.3
Q ss_pred EEeEeEeeccccccChhHHHHHHHHHHHhhCC
Q 003068 763 ELPLVATCREYQGKGCFQALFSCIERLLCSLN 794 (851)
Q Consensus 763 Elp~vAt~~~~RgqG~gr~L~~~iE~~l~~lg 794 (851)
-|--|-|.|.||++|||+.||+.-=++.+.-|
T Consensus 157 NLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 157 NLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred cEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 37788999999999999999987766665554
No 155
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=51.46 E-value=5.6 Score=47.93 Aligned_cols=51 Identities=33% Similarity=0.840 Sum_probs=36.0
Q ss_pred ccccCCCCcCCCCccCCCceeecCCCCCcccccccCCCCCCCcccCCCCCcEECCCchhHHHHH
Q 003068 578 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIHAAL 641 (851)
Q Consensus 578 ~C~iC~~~~~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~e~P~g~WfCc~~C~~i~~~L 641 (851)
.|.+|...+ -.-+|..+....|+.|...||..|+.... + ||+.|.++..+-
T Consensus 513 iCe~Cq~~~-iiyPF~~~~~~rC~~C~avfH~~C~~r~s-------~-----~CPrC~R~q~r~ 563 (580)
T KOG1829|consen 513 ICELCQHND-IIYPFETRNTRRCSTCLAVFHKKCLRRKS-------P-----CCPRCERRQKRA 563 (580)
T ss_pred eeeeccCCC-cccccccccceeHHHHHHHHHHHHHhccC-------C-----CCCchHHHHHHh
Confidence 577774332 23456677889999999999999997421 1 358898876543
No 156
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.38 E-value=13 Score=42.16 Aligned_cols=43 Identities=33% Similarity=0.771 Sum_probs=30.8
Q ss_pred cccccccCC---CceeecCCCCCcccccccCCCCCCCCCccccCCCC
Q 003068 510 DMCHVCGDG---ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNCRQ 553 (851)
Q Consensus 510 d~C~vCgdg---G~Ll~Cd~C~~afH~~Cl~~~~vp~g~W~C~~C~~ 553 (851)
+.|.||-+. |+.+.=--|...||..|+++..... .=+||-|+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKR 275 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCC
Confidence 599999863 6655556799999999999854432 335777754
No 157
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=44.08 E-value=35 Score=38.88 Aligned_cols=79 Identities=18% Similarity=0.310 Sum_probs=59.1
Q ss_pred CeEEEEEEeCC--EEEE-----eEEEEEEcC--ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCcc------EEEe
Q 003068 736 GMYSVILTVKS--VVVS-----AGLLRIFGR--EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVE------NLVL 800 (851)
Q Consensus 736 Gfy~~vl~~~~--~~V~-----aA~lri~g~--~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~------~LvL 800 (851)
-=|++.+.+.+ ++|| .++|||.|. .++||-+++|++..|++++.=.|+.+|-+...--||- -++|
T Consensus 133 ~~WHiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfqA~yTaGvvL 212 (421)
T KOG2779|consen 133 KEWHIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQAAYTAGVVL 212 (421)
T ss_pred cceEEEEEEecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhhHhhhcceee
Confidence 34555555433 5555 367888887 6899999999999999999999999998877666654 3677
Q ss_pred cchhhHHHHHHhcc
Q 003068 801 PAAEKAESIWTKKF 814 (851)
Q Consensus 801 ~A~~~A~~~w~~kf 814 (851)
|+-...-.-|-+.|
T Consensus 213 p~PVstcRY~HRsL 226 (421)
T KOG2779|consen 213 PKPVSTCRYWHRSL 226 (421)
T ss_pred ccccchhhhhhccC
Confidence 77777777777644
No 158
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=43.97 E-value=20 Score=41.33 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=21.3
Q ss_pred EeEeEeeccccccChhHHHHHHHHH
Q 003068 764 LPLVATCREYQGKGCFQALFSCIER 788 (851)
Q Consensus 764 lp~vAt~~~~RgqG~gr~L~~~iE~ 788 (851)
|--|-|.|.||++|||+.||+.==+
T Consensus 263 laCILtLPpyQRkGYGklLIdFSYe 287 (396)
T KOG2747|consen 263 LACILTLPPYQRKGYGKLLIDFSYE 287 (396)
T ss_pred eeeeeecChhhhcccchhhhhhhhh
Confidence 7788999999999999999875433
No 159
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=43.09 E-value=44 Score=38.01 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=39.1
Q ss_pred cCeEEEEEEe--CCEEEEeEEEEEE-c-----------------------------------CceEEEeEeEeecccccc
Q 003068 735 GGMYSVILTV--KSVVVSAGLLRIF-G-----------------------------------REVAELPLVATCREYQGK 776 (851)
Q Consensus 735 ~Gfy~~vl~~--~~~~V~aA~lri~-g-----------------------------------~~~AElp~vAt~~~~Rgq 776 (851)
..-|.+||++ .|+|||++.|..- | ++..||--+-++++||+-
T Consensus 53 ~~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~ 132 (336)
T TIGR03244 53 EQGYLFVLEDTETGTVAGVSAIEAAVGLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKG 132 (336)
T ss_pred CccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCC
Confidence 3568999985 6899999987652 1 456788888899999999
Q ss_pred ChhHHHHH
Q 003068 777 GCFQALFS 784 (851)
Q Consensus 777 G~gr~L~~ 784 (851)
|.|+.|=.
T Consensus 133 ~~G~LLSr 140 (336)
T TIGR03244 133 GNGRLLSK 140 (336)
T ss_pred cchhhHHH
Confidence 99977643
No 160
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=42.76 E-value=22 Score=43.72 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=25.1
Q ss_pred EEEeEeEeeccccccChhHHHHHHHHHHH
Q 003068 762 AELPLVATCREYQGKGCFQALFSCIERLL 790 (851)
Q Consensus 762 AElp~vAt~~~~RgqG~gr~L~~~iE~~l 790 (851)
|.|-||||+|+|++-|||.+-++-|.+..
T Consensus 615 aRIVRIAvhP~y~~MGYGsrAvqLL~~y~ 643 (1011)
T KOG2036|consen 615 ARIVRIAVHPEYQKMGYGSRAVQLLTDYF 643 (1011)
T ss_pred ceEEEEEeccchhccCccHHHHHHHHHHH
Confidence 56789999999999999998888877764
No 161
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=41.13 E-value=13 Score=34.81 Aligned_cols=31 Identities=32% Similarity=0.831 Sum_probs=26.9
Q ss_pred cccccccccC-CCceeecCC--CCCcccccccCC
Q 003068 508 SDDMCHVCGD-GENLLLCNG--CPLAFHAACLDP 538 (851)
Q Consensus 508 ~dd~C~vCgd-gG~Ll~Cd~--C~~afH~~Cl~~ 538 (851)
....|.+|+. .|..+-|.. |..+||..|...
T Consensus 54 ~~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCCCceeEEcCCCCCCcCCCHHHHHH
Confidence 4568999997 588999999 999999999864
No 162
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=40.91 E-value=34 Score=39.01 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=48.2
Q ss_pred CeEEEEEEe--CCEEEEeEEEEEE------------------------------------cCceEEEeEeEeeccccccC
Q 003068 736 GMYSVILTV--KSVVVSAGLLRIF------------------------------------GREVAELPLVATCREYQGKG 777 (851)
Q Consensus 736 Gfy~~vl~~--~~~~V~aA~lri~------------------------------------g~~~AElp~vAt~~~~RgqG 777 (851)
-.|.+||++ .|+||||+.|..- -++-.||--+-++++||+-|
T Consensus 58 ~~YlfVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~ 137 (342)
T PF04958_consen 58 EGYLFVLEDTETGEVVGTSAIEAAVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGG 137 (342)
T ss_dssp -EEEEEEEETTT--EEEEEEEESSTTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSH
T ss_pred cceEEEEEecCCCcEEEEEeEEeccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCc
Confidence 359999995 6999999987531 14568888899999999999
Q ss_pred hhHHHHHHHHHHH---hhCCccEEEecch-----hhHHHHHHhccCcEEc
Q 003068 778 CFQALFSCIERLL---CSLNVENLVLPAA-----EKAESIWTKKFGFRKM 819 (851)
Q Consensus 778 ~gr~L~~~iE~~l---~~lgV~~LvL~A~-----~~A~~~w~~kfGF~~i 819 (851)
.|+.|-.+=-=.. ++.=-++++..=. ..--+||. .+|-+-.
T Consensus 138 ~G~lLSr~RfLFiA~~~~rF~~~viAElrG~~De~G~SPFWd-alG~~FF 186 (342)
T PF04958_consen 138 NGRLLSRSRFLFIAQHRERFADRVIAELRGVSDEDGRSPFWD-ALGRHFF 186 (342)
T ss_dssp HHHHHHHHHHHHHHH-GGGS-SEEEEE--B---TT---HHHH-HTGGGTS
T ss_pred hHHHHHHHHHHHHHhChhhcchheeeeccCCcCCCCCCchHH-Hhhcccc
Confidence 9987755422111 1111234432211 23469999 7774433
No 163
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=39.34 E-value=50 Score=37.59 Aligned_cols=50 Identities=10% Similarity=0.008 Sum_probs=39.4
Q ss_pred cCeEEEEEEe--CCEEEEeEEEEEE-c-----------------------------------CceEEEeEeEeecccccc
Q 003068 735 GGMYSVILTV--KSVVVSAGLLRIF-G-----------------------------------REVAELPLVATCREYQGK 776 (851)
Q Consensus 735 ~Gfy~~vl~~--~~~~V~aA~lri~-g-----------------------------------~~~AElp~vAt~~~~Rgq 776 (851)
..-|.+||++ .|+|||++.|..- | ++..||--+-++++||+-
T Consensus 54 ~~~YlFVLEDt~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~ 133 (336)
T TIGR03245 54 EERYLFVLEDTETGKLLGTSSIVASAGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKT 133 (336)
T ss_pred CccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCC
Confidence 4578999995 6899999987652 1 456788888899999999
Q ss_pred ChhHHHHH
Q 003068 777 GCFQALFS 784 (851)
Q Consensus 777 G~gr~L~~ 784 (851)
|.|+.|=.
T Consensus 134 ~~G~lLSr 141 (336)
T TIGR03245 134 EAAELLSR 141 (336)
T ss_pred CchhHHHH
Confidence 99977643
No 164
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=39.22 E-value=51 Score=37.47 Aligned_cols=50 Identities=18% Similarity=0.151 Sum_probs=39.5
Q ss_pred cCeEEEEEEe--CCEEEEeEEEEEE-c-----------------------------------CceEEEeEeEeecccccc
Q 003068 735 GGMYSVILTV--KSVVVSAGLLRIF-G-----------------------------------REVAELPLVATCREYQGK 776 (851)
Q Consensus 735 ~Gfy~~vl~~--~~~~V~aA~lri~-g-----------------------------------~~~AElp~vAt~~~~Rgq 776 (851)
...|.+||++ .|+|||++.|..- | ++..||--+-++++||+-
T Consensus 53 ~~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~ 132 (335)
T TIGR03243 53 EEGYLFVLEDTETGTVAGVSAIEAAVGLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKG 132 (335)
T ss_pred CccEEEEEEeCCCCeEEEEEeEEecccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCC
Confidence 4579999995 6899999987652 1 456788888899999999
Q ss_pred ChhHHHHH
Q 003068 777 GCFQALFS 784 (851)
Q Consensus 777 G~gr~L~~ 784 (851)
|.|+.|=.
T Consensus 133 ~~G~LLSr 140 (335)
T TIGR03243 133 GNGRLLSR 140 (335)
T ss_pred CchhhHHH
Confidence 99977643
No 165
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=38.97 E-value=33 Score=40.37 Aligned_cols=31 Identities=26% Similarity=0.166 Sum_probs=24.4
Q ss_pred EEeEeEeeccccccChhHHHHHHHHHHHhhC
Q 003068 763 ELPLVATCREYQGKGCFQALFSCIERLLCSL 793 (851)
Q Consensus 763 Elp~vAt~~~~RgqG~gr~L~~~iE~~l~~l 793 (851)
-|--|-|.|.||++|||+.||+.-=++.+.-
T Consensus 308 NLaCIltlP~yQrkGyG~~LI~~SYeLSr~e 338 (450)
T PLN00104 308 NLACILTLPPYQRKGYGKFLIAFSYELSKRE 338 (450)
T ss_pred ceEEEEecchhhhcchhheehhheehhhhcc
Confidence 3778899999999999999998655544433
No 166
>PLN03239 histone acetyltransferase; Provisional
Probab=38.56 E-value=60 Score=37.09 Aligned_cols=32 Identities=22% Similarity=0.082 Sum_probs=25.8
Q ss_pred EEeEeEeeccccccChhHHHHHHHHHHHhhCC
Q 003068 763 ELPLVATCREYQGKGCFQALFSCIERLLCSLN 794 (851)
Q Consensus 763 Elp~vAt~~~~RgqG~gr~L~~~iE~~l~~lg 794 (851)
-|--|-|.|.||++|||+.||+.-=++.+.-|
T Consensus 215 NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 215 NLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred ceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 37788999999999999999987666655444
No 167
>PTZ00064 histone acetyltransferase; Provisional
Probab=38.52 E-value=49 Score=39.42 Aligned_cols=32 Identities=25% Similarity=0.169 Sum_probs=26.3
Q ss_pred EEeEeEeeccccccChhHHHHHHHHHHHhhCC
Q 003068 763 ELPLVATCREYQGKGCFQALFSCIERLLCSLN 794 (851)
Q Consensus 763 Elp~vAt~~~~RgqG~gr~L~~~iE~~l~~lg 794 (851)
-|--|-|.|.||++|||+.||+.==++.+.-|
T Consensus 386 NLACILtLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 386 NLACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred ceEEEEecchhhhcchhhhhhhhhhhhhhhcC
Confidence 47788999999999999999987766655544
No 168
>PRK10456 arginine succinyltransferase; Provisional
Probab=38.28 E-value=51 Score=37.64 Aligned_cols=50 Identities=16% Similarity=0.132 Sum_probs=39.0
Q ss_pred cCeEEEEEEe--CCEEEEeEEEEEE-c-----------------------------------CceEEEeEeEeecccccc
Q 003068 735 GGMYSVILTV--KSVVVSAGLLRIF-G-----------------------------------REVAELPLVATCREYQGK 776 (851)
Q Consensus 735 ~Gfy~~vl~~--~~~~V~aA~lri~-g-----------------------------------~~~AElp~vAt~~~~Rgq 776 (851)
..-|.+||++ .|+|||++.|..- | ++..||--+-++++||+-
T Consensus 55 ~~~YlFVLED~~tg~vvGts~I~a~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~ 134 (344)
T PRK10456 55 EQGYVFVLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKE 134 (344)
T ss_pred CccEEEEEEeCCCCcEEEEEeEEecccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCC
Confidence 4578999985 6899999987642 1 456788888889999999
Q ss_pred ChhHHHHH
Q 003068 777 GCFQALFS 784 (851)
Q Consensus 777 G~gr~L~~ 784 (851)
|.|+.|=.
T Consensus 135 ~~G~LLSr 142 (344)
T PRK10456 135 GNGYLLSK 142 (344)
T ss_pred CchhHHHH
Confidence 99977643
No 169
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=38.09 E-value=16 Score=32.73 Aligned_cols=30 Identities=23% Similarity=0.663 Sum_probs=26.7
Q ss_pred ccccccccCC-CceeecCC--CCCcccccccCC
Q 003068 509 DDMCHVCGDG-ENLLLCNG--CPLAFHAACLDP 538 (851)
Q Consensus 509 dd~C~vCgdg-G~Ll~Cd~--C~~afH~~Cl~~ 538 (851)
...|.+|+.. |..+-|.. |.+.||..|.--
T Consensus 36 ~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 36 KLKCSICKKKGGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCCcCCCCCCCeEEEEeCCCCCcEEChHHHcc
Confidence 4689999988 99999987 999999999865
No 170
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=37.81 E-value=18 Score=31.67 Aligned_cols=34 Identities=32% Similarity=0.695 Sum_probs=12.8
Q ss_pred ccccCCCCcCCCCccCCCceeecC--CCCCcccccccCC
Q 003068 578 GCVICRSHDFSAATFDDRTVIYCD--QCEKEFHVGCLRK 614 (851)
Q Consensus 578 ~C~iC~~~~~~~~~~d~~~LL~Cd--qC~r~fHv~CL~~ 614 (851)
.|.||...-. ..+....+.|+ +|.+.||..||..
T Consensus 4 ~C~IC~~~~~---~~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 4 ECGICYSYRL---DDGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp S-SSS--SS----TT-----B--S-TT----B-SGGGHH
T ss_pred CCCcCCcEec---CCCCcCceEcCCcccCCHHHHHHHHH
Confidence 6889986421 11234568998 9999999999853
No 171
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=37.28 E-value=7.1 Score=50.67 Aligned_cols=49 Identities=27% Similarity=0.512 Sum_probs=32.5
Q ss_pred CccccccccccCCC-ceeec--CCCCCcccccccCC--------CCCCCCCccccCCCCC
Q 003068 506 GGSDDMCHVCGDGE-NLLLC--NGCPLAFHAACLDP--------LLIPESGWRCPNCRQG 554 (851)
Q Consensus 506 ~~~dd~C~vCgdgG-~Ll~C--d~C~~afH~~Cl~~--------~~vp~g~W~C~~C~~~ 554 (851)
.+.||+|.+|-... ...-| -+|..-||..|..- +.+..|-..||-|.+.
T Consensus 3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~ 3542 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNK 3542 (3738)
T ss_pred cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccch
Confidence 46788899986431 11111 25899999999752 3344567799999873
No 172
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=36.68 E-value=28 Score=36.61 Aligned_cols=35 Identities=37% Similarity=0.801 Sum_probs=28.1
Q ss_pred ccccCCCCcCCCCccCCCceeecCCCCCcccccccC
Q 003068 578 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLR 613 (851)
Q Consensus 578 ~C~iC~~~~~~~~~~d~~~LL~CdqC~r~fHv~CL~ 613 (851)
.|.+|...+ -.-+|+.....+|..|...||..|..
T Consensus 154 iCe~C~~~~-~IfPF~~~~~~~C~~C~~v~H~~C~~ 188 (202)
T PF13901_consen 154 ICEICNSDD-IIFPFQIDTTVRCPKCKSVFHKSCFR 188 (202)
T ss_pred CCccCCCCC-CCCCCCCCCeeeCCcCccccchhhcC
Confidence 677887653 23466777899999999999999997
No 173
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=35.43 E-value=21 Score=40.71 Aligned_cols=47 Identities=23% Similarity=0.568 Sum_probs=35.9
Q ss_pred ceeecCCCCCcccccccCCCCCCCcccCCCCCcEECCCchhHHHHHhhh
Q 003068 596 TVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRIHAALQDF 644 (851)
Q Consensus 596 ~LL~CdqC~r~fHv~CL~~~g~~~L~e~P~g~WfCc~~C~~i~~~LqkL 644 (851)
-++.|+.|..|||..|. +.+++..+..+...|+| ..|+.....++..
T Consensus 74 ~~~~cd~C~~~~~~ec~-~v~~~~~e~p~~~~~~c-~~c~~~~~~~~~~ 120 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECW-EVGTAEKEAPKEDPKVC-DECKEAQDGMSES 120 (345)
T ss_pred hhhcccccccccccccc-ccCchhhcCCccccccc-cccchhhhhhhhh
Confidence 67999999999999993 22344555666789999 9999887665543
No 174
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=34.65 E-value=2.3e+02 Score=30.99 Aligned_cols=69 Identities=20% Similarity=0.180 Sum_probs=45.6
Q ss_pred cCeEEEEEEe-CCEEEEeEEEEEEc-CceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchh
Q 003068 735 GGMYSVILTV-KSVVVSAGLLRIFG-REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAE 804 (851)
Q Consensus 735 ~Gfy~~vl~~-~~~~V~aA~lri~g-~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~ 804 (851)
.++..+|++. +|+++|.+.+-..+ .+.+-+-+.=.+++ -=+|+-..|+..+-+.|++-|++.|-|..++
T Consensus 178 ~~~~~~~~~~~dgki~af~~~~~~~~~~~~~~~~~k~~~~-a~~G~~e~l~~~~~~~~~~~g~~~lnLg~ap 248 (299)
T PF09924_consen 178 LGLRGFVARVADGKIVAFAIGSPLGGRDGWSIDFEKADPD-APKGIYEFLNVEFAEHLKAEGVEYLNLGFAP 248 (299)
T ss_dssp HT-EEEEEEE-TTEEEEEEEEEEEE-TTEEEEEEEEE-TT--STTHHHHHHHHHHHHS--TT--EEE-----
T ss_pred cCceEEEEEECCCcEEEEEEEEEccCCccEEEEEEecCCC-CCCcHHHHHHHHHHHhhhhCCceEEEccccc
Confidence 4666677788 99999999998766 56665555544555 3578899999999999999999999976664
No 175
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=34.55 E-value=3.9 Score=32.03 Aligned_cols=39 Identities=31% Similarity=0.774 Sum_probs=23.8
Q ss_pred cccccccCC----CceeecCCCCCcccccccCCCCCCCCCccccCC
Q 003068 510 DMCHVCGDG----ENLLLCNGCPLAFHAACLDPLLIPESGWRCPNC 551 (851)
Q Consensus 510 d~C~vCgdg----G~Ll~Cd~C~~afH~~Cl~~~~vp~g~W~C~~C 551 (851)
|.|.||.+. ..++... |...||..|+..... ....||.|
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~--~~~~CP~C 43 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLK--RNNSCPVC 43 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHH--HSSB-TTT
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHH--hCCcCCcc
Confidence 568888753 3444444 999999999875211 12267776
No 176
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=34.43 E-value=1e+02 Score=32.08 Aligned_cols=55 Identities=20% Similarity=0.413 Sum_probs=46.4
Q ss_pred ceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEc
Q 003068 760 EVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKM 819 (851)
Q Consensus 760 ~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i 819 (851)
.++||-=+|. .+.|.++.||..|-..|...|++-++.-|......+.. ++|....
T Consensus 86 ~IvEvGnLAs----~~~g~~~~l~~~l~~~L~~~g~~w~vfTaT~~lr~~~~-rlgl~~~ 140 (179)
T PF12261_consen 86 QIVEVGNLAS----FSPGAARLLFAALAQLLAQQGFEWVVFTATRQLRNLFR-RLGLPPT 140 (179)
T ss_pred heeEeechhh----cCcccHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHH-HcCCCce
Confidence 3556655553 46899999999999999999999999999999999999 9987654
No 177
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=33.39 E-value=18 Score=26.33 Aligned_cols=29 Identities=24% Similarity=0.613 Sum_probs=12.2
Q ss_pred ccccCCCCcCCCCccCCCceeecCCCCCccccccc
Q 003068 578 GCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCL 612 (851)
Q Consensus 578 ~C~iC~~~~~~~~~~d~~~LL~CdqC~r~fHv~CL 612 (851)
.|.+|+++. +......|.+|+-..|..|.
T Consensus 2 ~C~~C~~~~------~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPI------DGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----------S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcC------CCCceEECccCCCccChhcC
Confidence 478888764 22478899999999998873
No 178
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=32.89 E-value=17 Score=29.22 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=19.3
Q ss_pred CcchhhhhhhhccccchhhhhhhH
Q 003068 674 TMNDVQWQMLKKAQCFEEKEKSLL 697 (851)
Q Consensus 674 ~~~~vkW~lLs~~~~swe~~~~lL 697 (851)
.+|.|+|+.+++.+++|++...+.
T Consensus 20 ~~y~VkW~g~~~~~~tWe~~~~l~ 43 (55)
T cd00024 20 YEYLVKWKGYSYSEDTWEPEENLE 43 (55)
T ss_pred EEEEEEECCCCCccCccccHHHhC
Confidence 468999999999999999544433
No 179
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=32.83 E-value=32 Score=36.19 Aligned_cols=38 Identities=26% Similarity=0.868 Sum_probs=30.1
Q ss_pred cccccccccCCC--------ceeecCCCCCcccccccCCCCCCCCCccccCCC
Q 003068 508 SDDMCHVCGDGE--------NLLLCNGCPLAFHAACLDPLLIPESGWRCPNCR 552 (851)
Q Consensus 508 ~dd~C~vCgdgG--------~Ll~Cd~C~~afH~~Cl~~~~vp~g~W~C~~C~ 552 (851)
....|.+|.+.+ ....|..|...||..|... -.||.|.
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-------~~CpkC~ 196 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-------KSCPKCA 196 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-------CCCCCcH
Confidence 456899998643 6789999999999999974 2289885
No 180
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=31.90 E-value=62 Score=34.96 Aligned_cols=43 Identities=9% Similarity=0.213 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhccCcEEcCH
Q 003068 778 CFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKFGFRKMSR 821 (851)
Q Consensus 778 ~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kfGF~~i~~ 821 (851)
-...|+..|+++|++.|+.+|+.-+..++.+.|. +.||...+.
T Consensus 22 ~~~~~~~~~~~~a~~~~~~ki~~~~~~~~~~~~~-~~g~~~e~~ 64 (266)
T TIGR03827 22 DVEALIPDLDALAKKEGYTKIIAKVPGSDKPLFE-ERGYLEEAK 64 (266)
T ss_pred cHHHHHHHHHHHHHHcCCcEEEEEccHHHHHHHH-HCCCeEEEe
Confidence 3789999999999999999999999999999999 999999844
No 181
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=30.27 E-value=24 Score=40.05 Aligned_cols=24 Identities=25% Similarity=0.294 Sum_probs=20.2
Q ss_pred EEEeEeEeeccccccChhHHHHHH
Q 003068 762 AELPLVATCREYQGKGCFQALFSC 785 (851)
Q Consensus 762 AElp~vAt~~~~RgqG~gr~L~~~ 785 (851)
--|--|-|.|.||++|||+.||+.
T Consensus 263 yNLaCILtLP~yQRrGYG~lLIdF 286 (395)
T COG5027 263 YNLACILTLPPYQRRGYGKLLIDF 286 (395)
T ss_pred CceEEEEecChhHhcccceEeeee
Confidence 347788999999999999988764
No 182
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=29.97 E-value=32 Score=38.00 Aligned_cols=37 Identities=30% Similarity=0.734 Sum_probs=17.7
Q ss_pred CccccccccccCC------------C-ceeecCCCCCcccccccCCCCCCCCCccccCCC
Q 003068 506 GGSDDMCHVCGDG------------E-NLLLCNGCPLAFHAACLDPLLIPESGWRCPNCR 552 (851)
Q Consensus 506 ~~~dd~C~vCgdg------------G-~Ll~Cd~C~~afH~~Cl~~~~vp~g~W~C~~C~ 552 (851)
.+....|.+||.. | ..+.|..|...+|.. ...|++|-
T Consensus 169 ~w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~----------R~~Cp~Cg 218 (290)
T PF04216_consen 169 GWQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV----------RIKCPYCG 218 (290)
T ss_dssp -TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE------------TTS-TTT-
T ss_pred CccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec----------CCCCcCCC
Confidence 4455799999841 2 678888887766632 34577774
No 183
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=29.62 E-value=36 Score=43.58 Aligned_cols=46 Identities=39% Similarity=1.115 Sum_probs=37.6
Q ss_pred cccccccccCCC--ceeecCCCCCcccccccCC--CCCCCCCccccCCCC
Q 003068 508 SDDMCHVCGDGE--NLLLCNGCPLAFHAACLDP--LLIPESGWRCPNCRQ 553 (851)
Q Consensus 508 ~dd~C~vCgdgG--~Ll~Cd~C~~afH~~Cl~~--~~vp~g~W~C~~C~~ 553 (851)
....|..|..+. .++.|++|...||..|..+ +.++++.|.|+.|..
T Consensus 154 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIP 203 (904)
T ss_pred cchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCcccc
Confidence 346688888654 3449999999999999997 578899999999976
No 184
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=28.36 E-value=45 Score=39.89 Aligned_cols=47 Identities=23% Similarity=0.373 Sum_probs=39.0
Q ss_pred ccccccccccCCCceeecCCCCCcccccccCCC-CCC--CCCccccCCCC
Q 003068 507 GSDDMCHVCGDGENLLLCNGCPLAFHAACLDPL-LIP--ESGWRCPNCRQ 553 (851)
Q Consensus 507 ~~dd~C~vCgdgG~Ll~Cd~C~~afH~~Cl~~~-~vp--~g~W~C~~C~~ 553 (851)
..+-+|..|.-.|..+.|+.|-|+||..|+.+. ..+ +..|.|+.|..
T Consensus 58 N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s 107 (588)
T KOG3612|consen 58 NIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYS 107 (588)
T ss_pred CCCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCcccc
Confidence 345679999999999999999999999999983 222 45799998865
No 185
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.16 E-value=18 Score=39.62 Aligned_cols=34 Identities=29% Similarity=0.566 Sum_probs=23.6
Q ss_pred CCccccccccccCC--------C--ceeecCCCCCcccccccCC
Q 003068 505 TGGSDDMCHVCGDG--------E--NLLLCNGCPLAFHAACLDP 538 (851)
Q Consensus 505 ~~~~dd~C~vCgdg--------G--~Ll~Cd~C~~afH~~Cl~~ 538 (851)
.+-+|..|.+||.. | +-+.=-.|...||..|+.-
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrG 263 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRG 263 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhh
Confidence 45678999999953 1 1222234999999999865
No 186
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=27.40 E-value=44 Score=39.29 Aligned_cols=61 Identities=15% Similarity=0.165 Sum_probs=43.1
Q ss_pred CceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEe-------cchhhHH-HHHHhccCcEEcC
Q 003068 759 REVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVL-------PAAEKAE-SIWTKKFGFRKMS 820 (851)
Q Consensus 759 ~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL-------~A~~~A~-~~w~~kfGF~~i~ 820 (851)
...|.|-+|.|+|+||+-|+|++-|.+.-+...+--++...- -||.--- +|++ +-||.-+=
T Consensus 239 taaariarvvvhpdyr~dglg~~sv~~a~ewI~eRriPEmr~rkHlvetiaqmarynpffe-~~gfkylw 307 (593)
T COG2401 239 TAAARIARVVVHPDYRADGLGQLSVIAALEWIIERRIPEMRPRKHLVETIAQMARYNPFFE-KVGFKYLW 307 (593)
T ss_pred hhhhheeEEEeccccccCccchhHHHHHHHHHHHhhChhhhhhhhHHHHHHHHHhcCchhh-hhceeeee
Confidence 345778899999999999999999988888777766654332 2332112 4555 88987653
No 187
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=27.09 E-value=32 Score=30.14 Aligned_cols=29 Identities=28% Similarity=0.663 Sum_probs=12.0
Q ss_pred cccccccC----CC--ceeecC--CCCCcccccccCC
Q 003068 510 DMCHVCGD----GE--NLLLCN--GCPLAFHAACLDP 538 (851)
Q Consensus 510 d~C~vCgd----gG--~Ll~Cd--~C~~afH~~Cl~~ 538 (851)
..|.||-. .+ ..+.|+ .|...||..||.-
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~ 39 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSE 39 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHH
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHH
Confidence 46888863 23 358898 7999999999963
No 188
>PF13066 DUF3929: Protein of unknown function (DUF3929)
Probab=26.92 E-value=59 Score=27.45 Aligned_cols=30 Identities=33% Similarity=0.336 Sum_probs=24.7
Q ss_pred cccCCCcHHHHHHHHhcCchhHHHHHHHHh
Q 003068 284 YLENGKPIYSIIQELKTAPLGILEEVVKKV 313 (851)
Q Consensus 284 ~lenG~sL~~v~~~~k~~~l~~l~~~i~~~ 313 (851)
|||||+++.||-.-|-.+--.+|+.+-..+
T Consensus 4 ~leng~~ikdikefcyrd~~k~lervahrv 33 (65)
T PF13066_consen 4 HLENGETIKDIKEFCYRDQGKMLERVAHRV 33 (65)
T ss_pred EccCCcChHHHHHHHhhhhhHHHHHHHHHh
Confidence 799999999999888888888887655443
No 189
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=26.32 E-value=39 Score=40.38 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=27.5
Q ss_pred CCceeecCCCCCcccccccCCCCCCCcccCCCCCcEECCCchhH
Q 003068 594 DRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNRI 637 (851)
Q Consensus 594 ~~~LL~CdqC~r~fHv~CL~~~g~~~L~e~P~g~WfCc~~C~~i 637 (851)
++..+.|+-|.|.||..|+.+... .......|.| +.|..+
T Consensus 69 pg~vl~c~vc~Rs~h~~c~sp~~q---~r~~s~p~~~-p~p~s~ 108 (588)
T KOG3612|consen 69 PGAVLKCIVCHRSFHENCQSPDPQ---KRNYSVPSDK-PQPYSF 108 (588)
T ss_pred CcceeeeehhhccccccccCcchh---hccccccccC-Cccccc
Confidence 567899999999999999986321 1112446777 555443
No 190
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=25.23 E-value=2.2e+02 Score=28.65 Aligned_cols=61 Identities=25% Similarity=0.352 Sum_probs=45.8
Q ss_pred cCeEEEEEEeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHHhhCCccEEEecchhhHHHHHHhcc
Q 003068 735 GGMYSVILTVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLLCSLNVENLVLPAAEKAESIWTKKF 814 (851)
Q Consensus 735 ~Gfy~~vl~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l~~lgV~~LvL~A~~~A~~~w~~kf 814 (851)
.|+..+-+|.||.++|++.|-.+.+ |.+||++|+. |+.-.+-+=. .|
T Consensus 65 ag~V~v~v~~~g~~~~~~~ikyys~-----------------------~~el~~lL~~---------~~~PvefmCQ-a~ 111 (142)
T PF14545_consen 65 AGSVNVRVYCDGVSLGTRQIKYYSR-----------------------MRELEQLLRK---------AANPVEFMCQ-AF 111 (142)
T ss_pred CceEEEEEEECCEEEEEEeEEEEec-----------------------HHHHHHHHHh---------cCChhhhhhh-hc
Confidence 7888999999999999999987654 6688888876 2222333444 88
Q ss_pred CcEEcCHHHHHhhh
Q 003068 815 GFRKMSRERLLKYQ 828 (851)
Q Consensus 815 GF~~i~~~~~~~~~ 828 (851)
|+...+.++|-.++
T Consensus 112 ~i~p~~~E~LD~~L 125 (142)
T PF14545_consen 112 GISPNDREELDNLL 125 (142)
T ss_pred CCCCCCHHHHHHHH
Confidence 88888888877765
No 191
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=24.32 E-value=65 Score=31.50 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=19.4
Q ss_pred eEeeccccccChhHHHHHHHHHH
Q 003068 767 VATCREYQGKGCFQALFSCIERL 789 (851)
Q Consensus 767 vAt~~~~RgqG~gr~L~~~iE~~ 789 (851)
+.|....|++|+|++|++.+.+.
T Consensus 52 FyVhes~QR~G~Gk~LF~~ML~~ 74 (120)
T PF05301_consen 52 FYVHESRQRRGYGKRLFDHMLQE 74 (120)
T ss_pred EEEEeceeccCchHHHHHHHHHH
Confidence 34788999999999999987654
No 192
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=23.71 E-value=34 Score=31.48 Aligned_cols=14 Identities=29% Similarity=0.930 Sum_probs=11.4
Q ss_pred cCCCCCcccccccC
Q 003068 600 CDQCEKEFHVGCLR 613 (851)
Q Consensus 600 CdqC~r~fHv~CL~ 613 (851)
-.+|...||..|+.
T Consensus 49 ~g~C~H~FH~hCI~ 62 (85)
T PF12861_consen 49 WGKCSHNFHMHCIL 62 (85)
T ss_pred eccCccHHHHHHHH
Confidence 34599999999975
No 193
>PTZ00062 glutaredoxin; Provisional
Probab=23.46 E-value=3.4e+02 Score=28.76 Aligned_cols=63 Identities=11% Similarity=0.015 Sum_probs=42.0
Q ss_pred hhccccchhhhhhhHhHHHHHHhhccccccccCCCCcccceeeccCCCCceecCeEEEEEEeCCEEEEeEEEEEEcCce
Q 003068 683 LKKAQCFEEKEKSLLSSATAIFRECFDPIIAECGRDLIPVMVYGRNISGQEFGGMYSVILTVKSVVVSAGLLRIFGREV 761 (851)
Q Consensus 683 Ls~~~~swe~~~~lLa~Al~If~E~FdPIi~~Sg~DLIp~mVygr~~~~~~~~Gfy~~vl~~~~~~V~aA~lri~g~~~ 761 (851)
+-+.++.|.+.-..+..++..+.+.|.. +.|-+=-.++++.+..++|++++|+.|. |+.|.+.
T Consensus 21 vl~f~a~w~~~C~~m~~vl~~l~~~~~~------------~~F~~V~~d~~V~~vPtfv~~~~g~~i~----r~~G~~~ 83 (204)
T PTZ00062 21 VLYVKSSKEPEYEQLMDVCNALVEDFPS------------LEFYVVNLADANNEYGVFEFYQNSQLIN----SLEGCNT 83 (204)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHCCC------------cEEEEEccccCcccceEEEEEECCEEEe----eeeCCCH
Confidence 3456667776666677777777777732 2222100118899999999999999977 5567663
No 194
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=22.88 E-value=24 Score=33.47 Aligned_cols=51 Identities=25% Similarity=0.669 Sum_probs=29.9
Q ss_pred ccccCCCCcCCCCccCCCceeec------CCC---CCcccccccCCCCCCCc-ccCCCCCcEECCCchh
Q 003068 578 GCVICRSHDFSAATFDDRTVIYC------DQC---EKEFHVGCLRKNGLCDL-KEIPKDKWFCCDDCNR 636 (851)
Q Consensus 578 ~C~iC~~~~~~~~~~d~~~LL~C------dqC---~r~fHv~CL~~~g~~~L-~e~P~g~WfCc~~C~~ 636 (851)
.|..|++... +..+.| ..| ...|--.||..+--.++ +-+...+|.| +.|..
T Consensus 9 ~CHqCrqKt~-------~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~C-P~Crg 69 (105)
T PF10497_consen 9 TCHQCRQKTL-------DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKC-PKCRG 69 (105)
T ss_pred CchhhcCCCC-------CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceEC-CCCCC
Confidence 5777876531 223445 555 88899999864321222 2234578999 55544
No 195
>KOG1642 consensus Ribonuclease, T2 family [RNA processing and modification]
Probab=22.32 E-value=54 Score=35.81 Aligned_cols=59 Identities=24% Similarity=0.407 Sum_probs=43.2
Q ss_pred ccchhhhhhhcccc-CCCC--CCcccccCCCcHHH---HHHHHhcC---------chhHHHHHHHHhhCCCCCc
Q 003068 262 VVSAHEFEQHAGAK-TRHP--NNHIYLENGKPIYS---IIQELKTA---------PLGILEEVVKKVAGSSFNE 320 (851)
Q Consensus 262 v~s~~~FE~HAGs~-~~~p--~~~I~lenG~sL~~---v~~~~k~~---------~l~~l~~~i~~~~g~~~~~ 320 (851)
-+=.-|||.|--+. +-.| ++|=||+.+-.|++ ++..|+.+ +++.++.||.+++|..+..
T Consensus 117 ~fW~HEweKHGTCa~sv~~~~dq~~YF~~~L~l~~k~~l~~~L~~~gI~p~~~~y~l~~I~nAi~~~~G~~p~I 190 (263)
T KOG1642|consen 117 SFWKHEWEKHGTCASSVFPLCDQHKYFETTLKLKQKLDLLSILKKAGIKPDDNFYSLADIKNAIKEAIGKTPGI 190 (263)
T ss_pred hhhhhhhhccCchhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCceeHHHHHHHHHHHhCCCCce
Confidence 34556788886655 4455 89999999988864 55556543 6778999999999987643
No 196
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.94 E-value=40 Score=38.51 Aligned_cols=46 Identities=28% Similarity=0.688 Sum_probs=30.2
Q ss_pred cccccCCCCcCCCCccCCCceeecCCCCCcccccccCCCCCCCcccCCCCCcEECCCchh
Q 003068 577 GGCVICRSHDFSAATFDDRTVIYCDQCEKEFHVGCLRKNGLCDLKEIPKDKWFCCDDCNR 636 (851)
Q Consensus 577 ~~C~iC~~~~~~~~~~d~~~LL~CdqC~r~fHv~CL~~~g~~~L~e~P~g~WfCc~~C~~ 636 (851)
..|+||-+.. ..+..+.=--|...||..|.++= |.. ..=+| +.|++
T Consensus 230 ~~CaIClEdY------~~GdklRiLPC~H~FH~~CIDpW----L~~---~r~~C-PvCK~ 275 (348)
T KOG4628|consen 230 DTCAICLEDY------EKGDKLRILPCSHKFHVNCIDPW----LTQ---TRTFC-PVCKR 275 (348)
T ss_pred ceEEEeeccc------ccCCeeeEecCCCchhhccchhh----Hhh---cCccC-CCCCC
Confidence 4899998642 34444444688899999999851 111 12267 78877
No 197
>PF10187 Nefa_Nip30_N: N-terminal domain of NEFA-interacting nuclear protein NIP30; InterPro: IPR019331 This is a the N-terminal 100 amino acids of a family of proteins conserved from plants to humans. The full-length protein has putatively been called NEFA-interacting nuclear protein NIP30, however no reference could be found to confirm this.
Probab=21.93 E-value=70 Score=30.28 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=22.3
Q ss_pred cCCCcHHHHHHHHhcCchhHHHHHHH
Q 003068 286 ENGKPIYSIIQELKTAPLGILEEVVK 311 (851)
Q Consensus 286 enG~sL~~v~~~~k~~~l~~l~~~i~ 311 (851)
.+|+|||++|++=|.+....++++++
T Consensus 35 ~d~rsLye~LqenK~~Kq~efeE~~K 60 (102)
T PF10187_consen 35 YDGRSLYERLQENKAAKQEEFEEKHK 60 (102)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 36999999999988888888887766
No 198
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=21.63 E-value=2.1e+02 Score=27.54 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=37.0
Q ss_pred EeCCEEEEeEEEEEE------cCceEEEeEeEeeccccc-cChhHHHHHHHHH
Q 003068 743 TVKSVVVSAGLLRIF------GREVAELPLVATCREYQG-KGCFQALFSCIER 788 (851)
Q Consensus 743 ~~~~~~V~aA~lri~------g~~~AElp~vAt~~~~Rg-qG~gr~L~~~iE~ 788 (851)
|.++..=++|.+..- +..++-|-.+||.+..|| .|++..++.+|-+
T Consensus 15 y~~~~y~~~AIvt~e~~~~~~~~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~ 67 (108)
T cd04266 15 IIAGDYEGAAILTWEGPDGSTPEKIAYLDKFAVLPKAQGSDGIADILFNAMLD 67 (108)
T ss_pred EEeCCCcEEEEEecCCCCccCCCCceEEEEEEEccccccccchHHHHHHHHHH
Confidence 455666666766443 367899999999999997 8999999999987
No 199
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=21.04 E-value=2.3e+02 Score=26.68 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=37.7
Q ss_pred EeCCEEEEeEEEEEEcCceEEEeEeEeeccccccChhHHHHHHHHHHH
Q 003068 743 TVKSVVVSAGLLRIFGREVAELPLVATCREYQGKGCFQALFSCIERLL 790 (851)
Q Consensus 743 ~~~~~~V~aA~lri~g~~~AElp~vAt~~~~RgqG~gr~L~~~iE~~l 790 (851)
|.++..=++|.+..-+..++.|-.+|+.+..++.|++..++.+|-+..
T Consensus 15 y~de~y~~~AIvt~~~~~v~~LdkFav~~~~~~~gv~D~vf~~i~~d~ 62 (98)
T cd03173 15 YADEPLEGVAIVTYEGNSIPYLDKFAVSDHLWLNNVTDNIFNLIRKDF 62 (98)
T ss_pred EEcCCccEEEEEecCCCCCEEEEEEEEcccccccCHHHHHHHHHHhhC
Confidence 445555566666443457999999999999999999999999988763
No 200
>PF04393 DUF535: Protein of unknown function (DUF535); InterPro: IPR007488 Family member Shigella flexneri VirK (Q99QA5 from SWISSPROT) is a virulence protein required for the expression, or correct membrane localisation of IcsA (VirG) on the bacterial cell surface [, ]. This family also includes Pasteurella haemolytica lapB (P32181 from SWISSPROT), which is thought to be membrane-associated.
Probab=20.52 E-value=3.8e+02 Score=29.81 Aligned_cols=71 Identities=13% Similarity=0.150 Sum_probs=49.8
Q ss_pred CCceecCeEEEEEEeCC-EEEEeEEEEEEcCceEEEeEeEeeccccc--------------cChh--HHHHHHHHHHHhh
Q 003068 730 SGQEFGGMYSVILTVKS-VVVSAGLLRIFGREVAELPLVATCREYQG--------------KGCF--QALFSCIERLLCS 792 (851)
Q Consensus 730 ~~~~~~Gfy~~vl~~~~-~~V~aA~lri~g~~~AElp~vAt~~~~Rg--------------qG~g--r~L~~~iE~~l~~ 792 (851)
.+++-.|+.++.|..++ +++..+++-+....--..=+|+....-++ .|+. +.||+++-.+++.
T Consensus 119 ~~~~kEGel~L~L~~~~~~~ly~~tF~~~~~~~~~~l~IG~lQGp~~~~~~e~ik~~TK~~hGlrPK~ll~e~l~~la~~ 198 (288)
T PF04393_consen 119 HGFRKEGELSLSLRDEEGQRLYSLTFSFVPQNGENTLFIGGLQGPKSENAHEIIKSATKACHGLRPKRLLLEALQALARA 198 (288)
T ss_pred CCCCCceeeEEEEEcCCCceEEEEEEEEEccCCCceEEEEeeeCCCCCCChHHHHHHHHHhcCcCHHHHHHHHHHHHHHH
Confidence 46778999999999765 99999999987222122223444333333 1333 7899999999999
Q ss_pred CCccEEEe
Q 003068 793 LNVENLVL 800 (851)
Q Consensus 793 lgV~~LvL 800 (851)
+||+.|..
T Consensus 199 ~~~~~i~a 206 (288)
T PF04393_consen 199 LGIEQILA 206 (288)
T ss_pred cCCCEEEE
Confidence 99997763
No 201
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=20.21 E-value=1.4e+02 Score=33.65 Aligned_cols=13 Identities=38% Similarity=0.951 Sum_probs=9.8
Q ss_pred CccccccccccCC
Q 003068 506 GGSDDMCHVCGDG 518 (851)
Q Consensus 506 ~~~dd~C~vCgdg 518 (851)
.++...|.+||..
T Consensus 184 ~~~~~~CPvCGs~ 196 (309)
T PRK03564 184 GEQRQFCPVCGSM 196 (309)
T ss_pred ccCCCCCCCCCCc
Confidence 4567899999853
No 202
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=20.09 E-value=37 Score=27.08 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=22.1
Q ss_pred CcchhhhhhhhccccchhhhhhhHhHHHHHHh
Q 003068 674 TMNDVQWQMLKKAQCFEEKEKSLLSSATAIFR 705 (851)
Q Consensus 674 ~~~~vkW~lLs~~~~swe~~~~lLa~Al~If~ 705 (851)
..|.|+|..+++.+++|++...+.+ +...+.
T Consensus 18 ~~ylVkW~g~~~~~~tW~~~~~l~~-~~~~v~ 48 (55)
T smart00298 18 LEYLVKWKGYSYSEDTWEPEENLLN-CSKKLD 48 (55)
T ss_pred EEEEEEECCCCCccCceeeHHHHHH-HHHHHH
Confidence 4689999999999999995444432 444443
Done!