Query 003069
Match_columns 851
No_of_seqs 386 out of 1590
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 16:24:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003069.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003069hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 2.6E-75 5.6E-80 604.0 19.3 211 163-376 1-229 (229)
2 PF08670 MEKHLA: MEKHLA domain 100.0 1.9E-58 4.1E-63 450.4 17.3 148 702-851 1-148 (148)
3 PF01852 START: START domain; 99.7 8.9E-18 1.9E-22 170.9 11.3 199 168-373 1-201 (206)
4 smart00234 START in StAR and p 99.7 1.9E-16 4E-21 161.6 16.5 199 169-376 2-205 (206)
5 KOG0483 Transcription factor H 99.7 1.5E-16 3.3E-21 162.8 9.3 104 16-127 49-152 (198)
6 KOG0843 Transcription factor E 99.5 3.1E-14 6.7E-19 141.5 6.0 63 17-83 102-164 (197)
7 KOG0489 Transcription factor z 99.5 2.3E-14 5.1E-19 153.5 5.0 62 16-81 158-219 (261)
8 KOG0488 Transcription factor B 99.4 7.3E-14 1.6E-18 152.6 5.9 64 15-82 170-233 (309)
9 KOG0487 Transcription factor A 99.4 6.2E-14 1.3E-18 151.5 3.6 65 18-86 236-300 (308)
10 KOG0850 Transcription factor D 99.4 1.4E-13 2.9E-18 141.6 5.6 69 9-81 114-182 (245)
11 KOG0842 Transcription factor t 99.4 1E-13 2.2E-18 149.8 4.6 65 17-85 153-217 (307)
12 PF00046 Homeobox: Homeobox do 99.4 4.8E-13 1E-17 110.6 5.6 57 18-78 1-57 (57)
13 KOG0492 Transcription factor M 99.4 6.1E-13 1.3E-17 134.7 6.0 65 13-81 140-204 (246)
14 KOG0484 Transcription factor P 99.4 5.2E-13 1.1E-17 122.0 4.8 61 16-80 16-76 (125)
15 KOG0848 Transcription factor C 99.3 3.2E-13 6.9E-18 141.1 3.1 56 21-80 203-258 (317)
16 KOG0493 Transcription factor E 99.3 2.4E-12 5.2E-17 133.9 5.3 59 16-78 245-303 (342)
17 KOG0485 Transcription factor N 99.3 3.4E-12 7.4E-17 130.0 4.8 58 18-79 105-162 (268)
18 cd00177 START Lipid-binding ST 99.3 5.1E-11 1.1E-15 118.7 12.9 185 172-373 2-189 (193)
19 KOG0494 Transcription factor C 99.2 5.6E-12 1.2E-16 131.2 5.4 58 21-82 145-202 (332)
20 KOG2251 Homeobox transcription 99.2 7.3E-12 1.6E-16 128.5 5.3 63 15-81 35-97 (228)
21 COG5576 Homeodomain-containing 99.2 1.4E-11 3.1E-16 122.5 5.9 67 11-81 45-111 (156)
22 smart00389 HOX Homeodomain. DN 99.2 2.2E-11 4.7E-16 99.8 5.1 55 19-77 2-56 (56)
23 cd00086 homeodomain Homeodomai 99.2 3.2E-11 6.9E-16 99.5 6.1 56 19-78 2-57 (59)
24 KOG0847 Transcription factor, 99.1 2.7E-11 5.8E-16 123.5 3.4 67 12-82 162-228 (288)
25 KOG0491 Transcription factor B 99.1 2.7E-11 5.9E-16 119.0 1.3 62 18-83 101-162 (194)
26 cd08868 START_STARD1_3_like Ch 99.1 2.6E-09 5.7E-14 110.5 15.3 195 166-378 6-208 (208)
27 TIGR01565 homeo_ZF_HD homeobox 99.1 1.6E-10 3.4E-15 97.0 4.8 52 18-73 2-57 (58)
28 cd08871 START_STARD10-like Lip 99.0 4.2E-09 9E-14 110.1 15.3 192 170-380 8-205 (222)
29 KOG4577 Transcription factor L 99.0 1.8E-10 3.8E-15 121.6 4.8 71 4-78 146-224 (383)
30 cd08867 START_STARD4_5_6-like 99.0 7.8E-09 1.7E-13 106.8 15.5 189 166-373 3-202 (206)
31 KOG0844 Transcription factor E 99.0 2.1E-10 4.5E-15 121.8 1.9 60 18-81 182-241 (408)
32 cd08904 START_STARD6-like Lipi 98.9 1.2E-08 2.6E-13 106.1 14.7 168 167-347 4-178 (204)
33 KOG0486 Transcription factor P 98.9 4.8E-10 1E-14 120.0 4.1 63 16-82 111-173 (351)
34 KOG3802 Transcription factor O 98.9 3.6E-10 7.7E-15 124.9 3.1 59 16-78 293-351 (398)
35 cd08903 START_STARD5-like Lipi 98.8 9.4E-08 2E-12 99.4 15.1 188 167-373 4-202 (208)
36 cd08905 START_STARD1-like Chol 98.8 5.2E-08 1.1E-12 101.4 13.0 190 166-373 6-203 (209)
37 PLN00188 enhanced disease resi 98.6 1.4E-07 3.1E-12 111.6 10.6 129 213-349 227-365 (719)
38 KOG0490 Transcription factor, 98.6 2.3E-08 5E-13 104.0 3.4 61 16-80 59-119 (235)
39 cd08869 START_RhoGAP C-termina 98.6 3.4E-07 7.3E-12 94.5 11.6 166 171-351 4-173 (197)
40 cd08906 START_STARD3-like Chol 98.6 9.4E-07 2E-11 92.2 14.8 190 166-373 6-203 (209)
41 cd08909 START_STARD13-like C-t 98.6 3.4E-07 7.5E-12 95.3 10.7 128 213-351 52-181 (205)
42 KOG0849 Transcription factor P 98.3 4.3E-07 9.3E-12 101.8 5.5 59 18-80 177-235 (354)
43 KOG1168 Transcription factor A 98.3 2.8E-07 6.1E-12 97.9 2.4 61 16-80 308-368 (385)
44 cd08902 START_STARD4-like Lipi 98.2 8.6E-06 1.9E-10 84.3 10.9 177 167-361 4-186 (202)
45 cd08908 START_STARD12-like C-t 98.1 1.3E-05 2.8E-10 83.6 10.1 167 169-351 10-180 (204)
46 KOG0775 Transcription factor S 98.0 4E-06 8.8E-11 89.0 4.5 51 24-78 183-233 (304)
47 cd08874 START_STARD9-like C-te 98.0 2.5E-05 5.4E-10 81.6 10.3 126 216-350 48-181 (205)
48 cd08907 START_STARD8-like C-te 97.9 0.00014 3E-09 75.7 12.7 167 169-350 10-180 (205)
49 cd08910 START_STARD2-like Lipi 97.9 9.8E-05 2.1E-09 77.0 11.7 174 184-376 23-205 (207)
50 PF13426 PAS_9: PAS domain; PD 97.9 0.00011 2.4E-09 64.7 10.0 101 742-847 1-101 (104)
51 cd08870 START_STARD2_7-like Li 97.7 0.00074 1.6E-08 70.3 14.9 191 172-376 6-207 (209)
52 KOG0774 Transcription factor P 97.7 2.4E-05 5.1E-10 82.6 3.0 57 18-78 189-248 (334)
53 cd08872 START_STARD11-like Cer 97.7 0.00029 6.3E-09 75.1 11.3 169 169-348 7-200 (235)
54 cd08877 START_2 Uncharacterize 97.6 0.00095 2.1E-08 69.6 13.4 175 167-351 4-190 (215)
55 cd08876 START_1 Uncharacterize 97.6 0.00046 9.9E-09 70.3 10.3 147 213-373 41-191 (195)
56 PF05920 Homeobox_KN: Homeobox 97.5 5.8E-05 1.3E-09 59.1 2.6 34 38-75 7-40 (40)
57 cd08873 START_STARD14_15-like 97.5 0.00025 5.5E-09 75.6 8.2 121 214-343 78-203 (235)
58 cd08914 START_STARD15-like Lip 97.2 0.002 4.4E-08 68.8 9.8 132 213-356 78-215 (236)
59 cd08911 START_STARD7-like Lipi 97.1 0.0025 5.5E-08 66.5 9.4 148 213-373 45-201 (207)
60 cd08913 START_STARD14-like Lip 97.0 0.0049 1.1E-07 66.1 11.4 124 216-353 84-216 (240)
61 KOG2252 CCAAT displacement pro 97.0 0.001 2.3E-08 77.1 6.0 58 16-77 419-476 (558)
62 KOG0490 Transcription factor, 96.9 0.00098 2.1E-08 69.5 4.6 61 17-81 153-213 (235)
63 PF00989 PAS: PAS fold; Inter 96.8 0.017 3.7E-07 51.5 11.5 107 735-846 3-111 (113)
64 PF08448 PAS_4: PAS fold; Int 96.6 0.021 4.5E-07 50.7 10.2 104 740-849 3-106 (110)
65 PRK13557 histidine kinase; Pro 96.2 0.035 7.6E-07 63.8 12.1 113 732-846 29-142 (540)
66 cd08904 START_STARD6-like Lipi 95.5 0.86 1.9E-05 47.9 17.3 174 416-684 20-203 (204)
67 cd08871 START_STARD10-like Lip 95.0 1.5 3.3E-05 46.0 17.8 65 406-489 13-79 (222)
68 PRK13559 hypothetical protein; 94.9 0.19 4.1E-06 55.4 11.2 114 732-847 42-156 (361)
69 KOG1146 Homeobox protein [Gene 94.8 0.022 4.7E-07 72.0 3.6 62 17-82 903-964 (1406)
70 cd08869 START_RhoGAP C-termina 94.5 3.8 8.2E-05 42.6 18.8 57 416-489 17-73 (197)
71 cd08907 START_STARD8-like C-te 94.4 3.9 8.5E-05 43.2 18.7 58 415-489 24-81 (205)
72 TIGR00229 sensory_box PAS doma 94.4 0.76 1.6E-05 37.8 11.1 107 735-847 5-113 (124)
73 PRK09413 IS2 repressor TnpA; R 94.2 0.17 3.7E-06 48.6 7.6 94 19-125 8-102 (121)
74 PRK11091 aerobic respiration c 93.5 0.49 1.1E-05 58.2 11.9 109 734-847 156-265 (779)
75 PF11569 Homez: Homeodomain le 93.5 0.057 1.2E-06 45.5 2.5 42 28-73 9-50 (56)
76 KOG0773 Transcription factor M 93.3 0.041 9E-07 61.5 1.8 57 18-78 240-299 (342)
77 cd00130 PAS PAS domain; PAS mo 92.5 2.2 4.7E-05 33.0 10.4 99 742-845 2-100 (103)
78 TIGR02938 nifL_nitrog nitrogen 92.4 0.53 1.1E-05 53.1 9.2 110 733-847 4-114 (494)
79 cd08876 START_1 Uncharacterize 90.8 16 0.00035 37.1 17.2 60 412-489 10-72 (195)
80 cd08877 START_2 Uncharacterize 90.6 12 0.00025 39.2 16.3 66 404-489 10-77 (215)
81 cd08864 SRPBCC_DUF3074 DUF3074 90.6 0.35 7.5E-06 51.0 4.9 109 236-350 66-183 (208)
82 TIGR02040 PpsR-CrtJ transcript 90.4 2 4.4E-05 49.2 11.4 84 734-821 134-218 (442)
83 cd00177 START Lipid-binding ST 90.2 20 0.00043 35.5 17.0 126 418-598 15-148 (193)
84 cd08868 START_STARD1_3_like Ch 89.9 26 0.00055 36.5 18.0 56 416-489 22-80 (208)
85 PF00170 bZIP_1: bZIP transcri 89.9 1.3 2.9E-05 37.8 7.1 45 73-117 19-63 (64)
86 KOG4196 bZIP transcription fac 89.9 6.6 0.00014 38.6 12.4 85 21-125 21-105 (135)
87 PRK13558 bacterio-opsin activa 89.8 2.5 5.3E-05 51.2 11.9 106 740-847 156-261 (665)
88 PRK13560 hypothetical protein; 89.6 2.2 4.7E-05 51.9 11.3 109 735-847 206-316 (807)
89 TIGR02040 PpsR-CrtJ transcript 89.1 2.2 4.7E-05 49.0 10.2 95 735-836 254-350 (442)
90 cd08874 START_STARD9-like C-te 88.0 3.3 7.2E-05 43.6 9.9 55 415-488 19-75 (205)
91 KOG2761 START domain-containin 87.2 1.1 2.4E-05 47.5 5.7 111 222-341 63-183 (219)
92 cd08909 START_STARD13-like C-t 86.8 46 0.001 35.3 17.7 54 418-488 27-80 (205)
93 PF13188 PAS_8: PAS domain; PD 86.2 0.91 2E-05 37.6 3.7 40 734-781 2-42 (64)
94 smart00340 HALZ homeobox assoc 86.0 1.2 2.7E-05 35.4 4.0 25 91-115 9-33 (44)
95 cd08870 START_STARD2_7-like Li 85.6 48 0.001 34.6 17.0 58 417-489 21-82 (209)
96 PRK11073 glnL nitrogen regulat 84.6 3 6.5E-05 45.6 7.9 91 735-833 10-100 (348)
97 cd08875 START_ArGLABRA2_like C 84.6 6.6 0.00014 42.3 10.0 163 396-598 3-180 (229)
98 PRK11359 cyclic-di-GMP phospho 84.4 6.1 0.00013 48.5 11.2 102 741-847 145-247 (799)
99 smart00234 START in StAR and p 83.9 16 0.00035 37.4 12.4 130 417-599 18-157 (206)
100 cd08906 START_STARD3-like Chol 82.8 67 0.0015 33.8 18.1 70 399-488 8-80 (209)
101 PRK10060 RNase II stability mo 82.5 7.9 0.00017 47.3 11.1 97 735-837 113-211 (663)
102 smart00338 BRLZ basic region l 81.9 5.3 0.00011 34.2 6.6 34 92-125 31-64 (65)
103 KOG4005 Transcription factor X 81.7 4.2 9E-05 43.6 7.0 54 70-123 82-140 (292)
104 PF08447 PAS_3: PAS fold; Int 81.6 9.1 0.0002 33.2 8.3 82 759-842 2-88 (91)
105 PRK09776 putative diguanylate 81.3 6.9 0.00015 49.9 10.3 109 732-845 282-392 (1092)
106 cd08908 START_STARD12-like C-t 79.6 82 0.0018 33.4 15.9 55 418-489 27-81 (204)
107 cd08911 START_STARD7-like Lipi 78.9 87 0.0019 32.8 15.9 57 416-489 19-77 (207)
108 KOG3623 Homeobox transcription 78.7 2.5 5.3E-05 51.4 4.7 48 29-80 568-615 (1007)
109 cd08913 START_STARD14-like Lip 78.7 24 0.00053 38.2 11.9 55 415-489 56-112 (240)
110 PF01852 START: START domain; 75.2 99 0.0022 31.4 15.9 148 400-598 2-156 (206)
111 PF04218 CENP-B_N: CENP-B N-te 74.5 4.9 0.00011 33.3 4.1 47 18-73 1-47 (53)
112 cd08873 START_STARD14_15-like 74.3 4.4 9.6E-05 43.7 4.8 53 416-488 53-107 (235)
113 PRK11360 sensory histidine kin 72.1 32 0.0007 39.8 11.7 106 735-847 264-370 (607)
114 PRK09776 putative diguanylate 71.2 24 0.00052 45.1 11.1 102 740-847 544-650 (1092)
115 PF13596 PAS_10: PAS domain; P 69.9 21 0.00046 32.4 7.7 97 741-847 8-104 (106)
116 PF02183 HALZ: Homeobox associ 69.8 14 0.00031 29.9 5.6 38 88-125 6-43 (45)
117 TIGR00219 mreC rod shape-deter 69.2 7.4 0.00016 43.0 5.3 36 92-127 71-110 (283)
118 PRK11359 cyclic-di-GMP phospho 68.6 22 0.00047 43.7 9.7 102 735-842 15-120 (799)
119 cd05018 CoxG Carbon monoxide d 68.1 53 0.0011 30.8 10.3 120 217-357 5-124 (144)
120 KOG3119 Basic region leucine z 67.6 10 0.00022 41.6 5.9 25 99-123 227-251 (269)
121 cd08866 SRPBCC_11 Ligand-bindi 66.9 58 0.0013 30.9 10.4 132 216-376 2-143 (144)
122 cd07821 PYR_PYL_RCAR_like Pyra 66.9 67 0.0014 29.7 10.6 35 218-252 6-40 (140)
123 PRK00888 ftsB cell division pr 66.5 18 0.00039 34.3 6.5 47 62-108 14-62 (105)
124 cd08910 START_STARD2-like Lipi 66.4 10 0.00023 39.7 5.5 65 408-489 13-81 (207)
125 PF07716 bZIP_2: Basic region 65.4 18 0.0004 29.9 5.6 9 113-121 37-45 (54)
126 PRK13922 rod shape-determining 64.7 11 0.00025 40.9 5.6 37 91-127 73-112 (276)
127 cd08914 START_STARD15-like Lip 64.2 10 0.00022 41.0 5.0 55 415-489 53-109 (236)
128 cd08860 TcmN_ARO-CYC_like N-te 63.6 76 0.0016 31.4 10.7 108 216-345 4-113 (146)
129 PF06005 DUF904: Protein of un 63.0 17 0.00038 32.3 5.3 33 92-124 23-55 (72)
130 KOG4571 Activating transcripti 61.6 18 0.00038 40.2 6.2 34 90-123 251-284 (294)
131 cd07813 COQ10p_like Coenzyme Q 60.7 45 0.00097 31.7 8.3 134 217-377 3-137 (138)
132 smart00091 PAS PAS domain. PAS 58.4 41 0.00088 23.6 6.0 57 737-797 5-62 (67)
133 cd08903 START_STARD5-like Lipi 57.4 16 0.00034 38.4 4.9 55 416-488 20-78 (208)
134 PRK13560 hypothetical protein; 57.0 74 0.0016 38.8 11.3 107 735-847 334-461 (807)
135 KOG4343 bZIP transcription fac 56.1 15 0.00033 43.6 4.8 31 98-128 306-336 (655)
136 PF00170 bZIP_1: bZIP transcri 54.9 67 0.0014 27.4 7.5 36 89-124 28-63 (64)
137 PRK10884 SH3 domain-containing 54.4 42 0.0009 35.6 7.4 40 86-125 131-170 (206)
138 KOG4343 bZIP transcription fac 54.0 29 0.00064 41.3 6.6 40 82-121 304-343 (655)
139 TIGR03752 conj_TIGR03752 integ 53.9 56 0.0012 38.7 8.9 27 23-52 41-67 (472)
140 KOG4005 Transcription factor X 53.6 27 0.00059 37.6 5.8 47 79-125 103-149 (292)
141 KOG4196 bZIP transcription fac 53.3 30 0.00066 34.1 5.6 42 74-115 68-109 (135)
142 cd08861 OtcD1_ARO-CYC_like N-t 53.2 61 0.0013 30.7 7.8 33 217-249 3-37 (142)
143 PRK11006 phoR phosphate regulo 52.9 32 0.00069 39.2 6.9 49 733-785 98-147 (430)
144 COG1415 Uncharacterized conser 52.7 69 0.0015 36.6 9.0 126 687-827 7-161 (373)
145 COG3074 Uncharacterized protei 52.6 36 0.00078 30.2 5.3 42 84-125 22-63 (79)
146 KOG0709 CREB/ATF family transc 51.3 36 0.00077 40.1 6.7 38 92-129 277-314 (472)
147 PRK10724 hypothetical protein; 51.0 1.1E+02 0.0025 30.8 9.7 133 216-377 18-153 (158)
148 COG4026 Uncharacterized protei 50.9 54 0.0012 35.2 7.4 49 80-128 142-190 (290)
149 cd08905 START_STARD1-like Chol 50.5 3.2E+02 0.007 28.6 17.2 71 398-488 7-80 (209)
150 PF01166 TSC22: TSC-22/dip/bun 49.4 26 0.00056 30.1 3.9 33 93-125 13-45 (59)
151 TIGR02966 phoR_proteo phosphat 48.9 57 0.0012 34.6 7.6 78 735-824 8-86 (333)
152 cd08902 START_STARD4-like Lipi 48.6 3.7E+02 0.008 28.7 18.7 56 415-488 20-77 (202)
153 smart00338 BRLZ basic region l 48.3 1.1E+02 0.0024 26.0 7.8 45 73-117 19-63 (65)
154 KOG4571 Activating transcripti 48.1 49 0.0011 36.8 6.9 43 73-115 241-283 (294)
155 PRK15422 septal ring assembly 48.0 46 0.00099 30.3 5.5 42 84-125 22-63 (79)
156 PF07407 Seadorna_VP6: Seadorn 47.9 24 0.00053 39.6 4.5 30 573-602 337-376 (420)
157 cd08872 START_STARD11-like Cer 47.2 51 0.0011 35.5 6.8 62 411-488 19-83 (235)
158 PF06005 DUF904: Protein of un 47.1 68 0.0015 28.6 6.4 42 83-124 21-62 (72)
159 PF06156 DUF972: Protein of un 46.8 49 0.0011 31.7 5.9 39 91-129 19-57 (107)
160 PF02183 HALZ: Homeobox associ 46.0 31 0.00068 28.0 3.8 33 93-125 4-36 (45)
161 PRK10820 DNA-binding transcrip 45.4 1.1E+02 0.0024 36.6 10.0 100 735-847 82-184 (520)
162 KOG3119 Basic region leucine z 44.0 54 0.0012 36.1 6.6 32 97-128 218-249 (269)
163 cd07819 SRPBCC_2 Ligand-bindin 43.8 2.7E+02 0.0058 25.8 10.8 110 216-346 5-114 (140)
164 TIGR02894 DNA_bind_RsfA transc 41.6 60 0.0013 33.3 5.9 39 86-124 103-141 (161)
165 PRK13169 DNA replication intia 41.5 64 0.0014 31.1 5.8 36 92-127 20-55 (110)
166 PF08172 CASP_C: CASP C termin 40.1 67 0.0015 35.1 6.5 47 83-129 89-135 (248)
167 PF01527 HTH_Tnp_1: Transposas 39.4 9.4 0.0002 32.9 -0.1 44 19-70 2-45 (76)
168 PF07716 bZIP_2: Basic region 37.8 2E+02 0.0044 23.7 7.5 22 101-122 32-53 (54)
169 PF06637 PV-1: PV-1 protein (P 37.2 1.5E+02 0.0033 34.3 8.7 27 99-125 354-380 (442)
170 PF14197 Cep57_CLD_2: Centroso 36.4 1.2E+02 0.0026 26.8 6.3 39 87-125 26-64 (69)
171 COG1792 MreC Cell shape-determ 36.1 60 0.0013 36.0 5.4 37 92-128 71-110 (284)
172 cd07822 SRPBCC_4 Ligand-bindin 36.1 3.3E+02 0.0071 25.1 9.8 32 217-248 4-35 (141)
173 PHA03155 hypothetical protein; 35.6 38 0.00083 32.7 3.2 25 103-127 10-34 (115)
174 PRK13729 conjugal transfer pil 35.6 99 0.0021 36.8 7.2 45 82-126 78-122 (475)
175 PF15058 Speriolin_N: Sperioli 34.3 56 0.0012 34.4 4.5 37 92-129 10-46 (200)
176 PF04977 DivIC: Septum formati 33.6 63 0.0014 28.0 4.2 11 113-123 36-46 (80)
177 cd04765 HTH_MlrA-like_sg2 Heli 32.8 60 0.0013 30.3 4.1 21 47-71 3-23 (99)
178 cd08867 START_STARD4_5_6-like 32.7 99 0.0022 32.1 6.2 66 399-488 9-78 (206)
179 PF05812 Herpes_BLRF2: Herpesv 32.5 48 0.001 32.3 3.4 27 103-129 5-31 (118)
180 PHA03162 hypothetical protein; 32.4 46 0.00099 33.0 3.3 25 103-127 15-39 (135)
181 PRK00888 ftsB cell division pr 32.2 62 0.0013 30.7 4.1 31 84-114 31-61 (105)
182 PRK10884 SH3 domain-containing 31.3 1.2E+02 0.0026 32.2 6.5 36 92-127 130-165 (206)
183 PRK03975 tfx putative transcri 31.0 1.4E+02 0.003 30.0 6.5 48 21-78 4-51 (141)
184 KOG1962 B-cell receptor-associ 30.8 1.3E+02 0.0027 32.4 6.5 18 109-126 194-211 (216)
185 PF09744 Jnk-SapK_ap_N: JNK_SA 29.8 4.2E+02 0.0091 27.1 9.8 28 97-124 85-112 (158)
186 KOG2391 Vacuolar sorting prote 29.8 1.4E+02 0.0031 34.0 6.9 49 77-125 222-270 (365)
187 PF12808 Mto2_bdg: Micro-tubul 29.7 69 0.0015 27.0 3.4 24 104-127 25-48 (52)
188 cd04769 HTH_MerR2 Helix-Turn-H 29.6 3.2E+02 0.0068 26.0 8.5 81 20-122 34-114 (116)
189 PF10226 DUF2216: Uncharacteri 29.5 1.9E+02 0.0041 30.5 7.3 32 71-103 47-78 (195)
190 cd04766 HTH_HspR Helix-Turn-He 29.4 2.7E+02 0.0058 25.2 7.7 74 47-126 4-90 (91)
191 PF04967 HTH_10: HTH DNA bindi 29.3 65 0.0014 27.1 3.3 39 24-66 1-41 (53)
192 PF10224 DUF2205: Predicted co 29.1 2E+02 0.0044 26.3 6.6 44 84-127 20-63 (80)
193 cd06171 Sigma70_r4 Sigma70, re 29.0 72 0.0016 24.3 3.4 43 23-74 10-52 (55)
194 PF07407 Seadorna_VP6: Seadorn 28.9 82 0.0018 35.6 4.9 29 81-109 33-61 (420)
195 PF10604 Polyketide_cyc2: Poly 28.5 4.6E+02 0.01 24.0 13.7 36 217-252 6-41 (139)
196 cd00569 HTH_Hin_like Helix-tur 27.7 1.2E+02 0.0026 20.5 4.2 40 21-69 3-42 (42)
197 COG2202 AtoS FOG: PAS/PAC doma 27.3 4.4E+02 0.0096 23.4 9.3 78 739-820 119-198 (232)
198 TIGR02894 DNA_bind_RsfA transc 27.2 1.4E+02 0.0031 30.6 5.9 47 80-126 104-150 (161)
199 PF06785 UPF0242: Uncharacteri 27.0 1.9E+02 0.004 33.1 7.1 60 68-127 54-118 (401)
200 PF12711 Kinesin-relat_1: Kine 26.3 1.1E+02 0.0023 28.4 4.4 20 110-129 46-65 (86)
201 PRK11086 sensory histidine kin 25.9 3.1E+02 0.0068 31.8 9.4 91 740-847 229-322 (542)
202 PF15035 Rootletin: Ciliary ro 25.9 1.7E+02 0.0037 30.5 6.4 43 83-125 77-119 (182)
203 PF10481 CENP-F_N: Cenp-F N-te 25.8 1.5E+02 0.0033 32.9 6.1 23 107-129 108-130 (307)
204 KOG3335 Predicted coiled-coil 25.7 1.5E+02 0.0033 30.9 5.8 30 85-114 104-133 (181)
205 PF04880 NUDE_C: NUDE protein, 25.7 87 0.0019 32.3 4.1 21 104-124 27-47 (166)
206 PF06156 DUF972: Protein of un 25.5 1.3E+02 0.0029 28.7 5.1 37 92-128 13-49 (107)
207 PF07558 Shugoshin_N: Shugoshi 24.9 59 0.0013 26.5 2.2 37 88-124 8-44 (46)
208 TIGR02449 conserved hypothetic 24.8 2.3E+02 0.005 25.0 5.9 28 91-118 18-45 (65)
209 cd08865 SRPBCC_10 Ligand-bindi 24.3 5.5E+02 0.012 23.4 10.9 37 218-254 4-40 (140)
210 TIGR03752 conj_TIGR03752 integ 24.0 1.5E+02 0.0034 35.2 6.2 21 82-102 75-95 (472)
211 TIGR02209 ftsL_broad cell divi 24.0 1.4E+02 0.0031 26.4 4.8 18 108-125 38-55 (85)
212 PF04545 Sigma70_r4: Sigma-70, 23.7 1.3E+02 0.0028 24.0 4.0 39 23-70 4-42 (50)
213 PF13936 HTH_38: Helix-turn-he 23.6 87 0.0019 24.9 2.9 41 20-69 1-41 (44)
214 PLN00188 enhanced disease resi 23.5 3.9E+02 0.0084 33.6 9.6 96 469-599 236-341 (719)
215 PF07334 IFP_35_N: Interferon- 23.5 1.2E+02 0.0027 27.4 4.1 26 98-123 4-29 (76)
216 PF14662 CCDC155: Coiled-coil 23.4 1.8E+02 0.0039 30.7 5.9 38 88-125 82-119 (193)
217 KOG0288 WD40 repeat protein Ti 23.3 2.5E+02 0.0053 33.0 7.4 45 82-126 29-73 (459)
218 PF14197 Cep57_CLD_2: Centroso 22.5 3.1E+02 0.0067 24.3 6.4 35 91-125 23-57 (69)
219 PF05529 Bap31: B-cell recepto 22.5 2.2E+02 0.0048 29.3 6.5 34 93-126 153-186 (192)
220 PF06210 DUF1003: Protein of u 22.3 2.6E+02 0.0057 26.8 6.4 45 70-115 57-101 (108)
221 PF08961 DUF1875: Domain of un 21.8 30 0.00066 37.0 0.0 36 85-120 127-162 (243)
222 KOG4797 Transcriptional regula 21.5 1.6E+02 0.0034 28.4 4.6 31 92-122 65-95 (123)
223 PF10883 DUF2681: Protein of u 21.5 2.1E+02 0.0046 26.6 5.4 33 89-126 32-64 (87)
224 cd01109 HTH_YyaN Helix-Turn-He 21.0 6.6E+02 0.014 23.5 8.9 38 19-73 34-71 (113)
225 PF05529 Bap31: B-cell recepto 20.9 2.4E+02 0.0052 29.1 6.4 39 87-125 154-192 (192)
226 PRK14872 rod shape-determining 20.1 1.9E+02 0.0042 33.0 5.8 39 83-125 60-98 (337)
227 PRK13169 DNA replication intia 20.1 2E+02 0.0044 27.8 5.1 32 95-126 16-47 (110)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=2.6e-75 Score=604.05 Aligned_cols=211 Identities=36% Similarity=0.593 Sum_probs=195.3
Q ss_pred hhhhHHHHHHHHHHHHHhhcCCCCceEecCCCCC---CCCccceeec------cCCCcceeeeeeeEEeeChhhHHHHhc
Q 003069 163 PAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKP---GPDSIGIVAV------SRNCSGVAARACGLVSLDPTKIAEILK 233 (851)
Q Consensus 163 ~~~l~~~A~~am~Ell~la~~~~plWi~~~g~~~---g~~~~g~~~~------~~~~~~eASR~~glV~~~~~~LVe~lm 233 (851)
+++|++||++||+||++||++++|+|++++|+|+ ++|.++..++ ..||++||||+||+|+||+.+|||+||
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~lm 80 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEILM 80 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCCccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHHh
Confidence 3689999999999999999999999999999877 7788755432 235999999999999999999999999
Q ss_pred CccchhhcCCcc----eeeeeccCCC----ccHHHHHHHhhcccccccccceeeEEeecceeCCCcEEEEEeecCCCCCC
Q 003069 234 DCPSWFRDCRCL----DVLSVIPTGN----GGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGG 305 (851)
Q Consensus 234 D~~~W~~~f~~~----~~l~~~~~g~----~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~ 305 (851)
|+++|.++||++ +|+.++++|+ +|+|||||+|||+||||||+|||||||||||++||+|||||||+|+.+.
T Consensus 81 D~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~- 159 (229)
T cd08875 81 DVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT- 159 (229)
T ss_pred ChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc-
Confidence 999999999876 8999999996 7899999999999999999999999999999999999999999998752
Q ss_pred CCCCCCCCccceeecccceEEeecCCCceEEEEEEeeeccCCCccccchhhhhchHHHHHHHHHHHH-HHHH
Q 003069 306 PTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAM-RHIR 376 (851)
Q Consensus 306 ~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~aL-r~~e 376 (851)
.++.++|+||||+|||||||||+|||||||||||+|||++.+|.+||++++||+||||+||+++| ||||
T Consensus 160 --~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 160 --APPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred --CCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 33456789999999999999999999999999999999999999999999999999999999999 7997
No 2
>PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=100.00 E-value=1.9e-58 Score=450.41 Aligned_cols=148 Identities=41% Similarity=0.620 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHhcCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccc
Q 003069 702 PEALTLARWISRSYRIHTGGELLRADSLTGDALLKQLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIML 781 (851)
Q Consensus 702 pe~~~l~~~i~~Sy~~~~G~~L~~~~~~~~~~~~~~L~~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lps 781 (851)
||++.|+++|++||+++||++|+++...+.++.+++||+|||+||||+++ +||+|||||++||+||||||+||++|||
T Consensus 1 pe~~~~~~~l~~SY~~~~G~~L~~~~~~~~~~~~~~L~~ap~ailsh~~~--~dP~f~yaN~aaL~l~e~~w~el~~lPs 78 (148)
T PF08670_consen 1 PEALALAQLLLQSYRRWTGRDLLPSDDSSAEELAKALWHAPFAILSHGTK--ADPIFIYANQAALDLFETTWDELVGLPS 78 (148)
T ss_pred ChHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHcCCCEEEEcCCC--CCCEEEehhHHHHHHhcCCHHHHhcCcH
Confidence 79999999999999999999999987777789999999999999999999 9999999999999999999999999999
Q ss_pred cccCChhcHHHHHHHHHHHHHhCcccCCCeeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecCcccC
Q 003069 782 DKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMNWSFV 851 (851)
Q Consensus 782 r~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~W~~l 851 (851)
|+||||++|+||+++|++|++|||+++|+||||||+||||+|++|+||||+|++|+++||||||.||+||
T Consensus 79 r~sae~~~r~er~~lL~~v~~qG~~~~y~GiRiss~Grrf~ie~a~vW~l~D~~g~~~GqAa~F~~W~~l 148 (148)
T PF08670_consen 79 RLSAEEPERKERQSLLAQVMQQGYIDNYSGIRISSTGRRFRIERATVWNLIDEDGNYCGQAAMFSNWSFL 148 (148)
T ss_pred hhccChhhHHHHHHHHHHHHHhCCccCCCeEEEcCCCCeEEEeceEEEEEEcCCCCEEEEEEEEeeeEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997
No 3
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.74 E-value=8.9e-18 Score=170.91 Aligned_cols=199 Identities=29% Similarity=0.396 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHHhhcCCCCceEecCCCCCCCCccceeeccCCCcceeeeeeeEEeeChhhHHHHhcCcc-chhhcCCcce
Q 003069 168 AVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIAEILKDCP-SWFRDCRCLD 246 (851)
Q Consensus 168 ~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~g~~~~~~~~~~eASR~~glV~~~~~~LVe~lmD~~-~W~~~f~~~~ 246 (851)
++|++++.+++++++.++..|....+.+.+...+...+.+.++....-|..++|...+.++++.|+|.. +|-.++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~Wd~~~~~~~ 80 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKDKKNGDVYYKKVSPSDSCPIKMFKAEGVVPASPEQVVEDLLDDREQWDKMCVEAE 80 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEEETTTCEEEEEEECSSSTSCEEEEEEEEESSCHHHHHHHHHCGGGHHSTTEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEccCCCeEEEEEeCccccccceEEEEEEEEcCChHHHHHHHHhhHhhcccchhhhe
Confidence 589999999999999999999997633333333333332233477889999999999999999999988 9999999999
Q ss_pred eeeeccCCCccHHHHHHHhhcccccccccceeeEEeecceeCCCcEEEEEeecCCCCCCCCCCC-CCCccceeecccceE
Q 003069 247 VLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPP-PSSFVRAEMLASGFL 325 (851)
Q Consensus 247 ~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~-~~~~~r~rrlPSGcl 325 (851)
+|+.++.+ ..|..++.++..++|+.| |||.++|++++.++|.++|+.+|++... .++ ...++|+..++||++
T Consensus 81 ~le~~~~~--~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~----~~~~~~~~VR~~~~~s~~~ 153 (206)
T PF01852_consen 81 VLEQIDED--TDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQ----YPPNSKGYVRAEILISGWV 153 (206)
T ss_dssp EEEEEETT--EEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTT----SSTT-TTSEEEEEESEEEE
T ss_pred eeeecCCC--CeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeecccc----ccccccCcceeeeeeEeEE
Confidence 99999875 455556677788889999 9999999999999999999999998643 223 468999999999999
Q ss_pred EeecCCCceEEEEEEeeeccCCCccccchhhhhchHHHHHHHHHHHHH
Q 003069 326 IRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR 373 (851)
Q Consensus 326 Iq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~aLr 373 (851)
|++.++|.|+||+|-|+|..-+...-+++.++.+...-..+.+.+.|+
T Consensus 154 i~~~~~~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~ 201 (206)
T PF01852_consen 154 IRPLGDGRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALK 201 (206)
T ss_dssp EEEETTCEEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEccCCCceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999988899999999999887777777775
No 4
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.71 E-value=1.9e-16 Score=161.63 Aligned_cols=199 Identities=33% Similarity=0.488 Sum_probs=159.6
Q ss_pred HHHHHHHHHHHhhcCCCCceEecCCCCCCCCccceeeccCCCcceeeeeeeEEeeChhh-HHHHhcCc---cchhhcCCc
Q 003069 169 VAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTK-IAEILKDC---PSWFRDCRC 244 (851)
Q Consensus 169 ~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~g~~~~~~~~~~eASR~~glV~~~~~~-LVe~lmD~---~~W~~~f~~ 244 (851)
.|++++.|+++++...+..|....+.+.|..++.... ..+..+.+-|..++|...+.+ +.++|+|. .+|-..|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~ 80 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSENENGDEVRSILS-PGRSPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAK 80 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEccccCCcceEEEEcc-CCCCceEEEEEEEEEecChHHHHHHHHhcccchhhCchhccc
Confidence 3788999999999999999999875455555443321 112456899999999999997 66788787 789999999
Q ss_pred ceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeecceeCCCcEEEEEeecCCCCCCCCCCCCCCccceeecccce
Q 003069 245 LDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGF 324 (851)
Q Consensus 245 ~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGc 324 (851)
.++|+.++.+. .++|.-+..|-+++..|||.++|++++.++|.|+|+..|++.. ..|+...++|+..++||+
T Consensus 81 ~~~ie~~~~~~----~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~----~~p~~~~~VR~~~~~~~~ 152 (206)
T smart00234 81 AETLEVIDNGT----VIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHP----TSPPTSGYVRAENLPSGL 152 (206)
T ss_pred EEEEEEECCCC----eEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCC----CCCCCCCceEEEEeceEE
Confidence 99999887642 2233222233213566999999999999999999999999853 344456899999999999
Q ss_pred EEeecCCCceEEEEEEeeeccCCCccccchhhhhchHHHHHHHHHHHHH-HHH
Q 003069 325 LIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIR 376 (851)
Q Consensus 325 lIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~aLr-~~e 376 (851)
+|+++++|.|+|||+.|+|..-+..+-+.+.++.++.....+.+.++++ +|+
T Consensus 153 ~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T smart00234 153 LIEPLGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKHCA 205 (206)
T ss_pred EEEECCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999977889999999999999999999885 665
No 5
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.66 E-value=1.5e-16 Score=162.82 Aligned_cols=104 Identities=34% Similarity=0.499 Sum_probs=95.2
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHHHHHHhhhhHHHHh
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAM 95 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~~~~l~~~n~kl~~e 95 (851)
..++++.|+|.+|+..||+.|+...+..+.+|.+||++| ||.++||+|||||||+|||.++.+.. .+.|+.+
T Consensus 49 ~~~~kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~L----gL~pRQVavWFQNRRARwK~kqlE~d----~~~Lk~~ 120 (198)
T KOG0483|consen 49 KGKGKKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKEL----GLQPRQVAVWFQNRRARWKTKQLEKD----YESLKRQ 120 (198)
T ss_pred ccccccccccHHHHHHhHHhhccccccChHHHHHHHHhh----CCChhHHHHHHhhccccccchhhhhh----HHHHHHH
Confidence 356778899999999999999999999999999999999 99999999999999999999887744 4559999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003069 96 NKLLMEENDRLQKQVSHLVYENGYMRQQLHSA 127 (851)
Q Consensus 96 n~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~~ 127 (851)
.+.++.++++++.+++.|+.|...++.+.++.
T Consensus 121 ~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~~ 152 (198)
T KOG0483|consen 121 LESLRSENDRLQSEVQELVAELSSLKREMQKS 152 (198)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhhhhhhhccC
Confidence 99999999999999999999988888887774
No 6
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.48 E-value=3.1e-14 Score=141.52 Aligned_cols=63 Identities=30% Similarity=0.503 Sum_probs=59.0
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHHH
Q 003069 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS 83 (851)
Q Consensus 17 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~~~ 83 (851)
.+|.|+.||.+|+..||..|+.|+|....+|++||+.| +|++.||||||||||+|.||.+.+.
T Consensus 102 ~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L----~LsetQVkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 102 PKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSL----SLSETQVKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred CCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHc----CCChhHhhhhhhhhhHHHHHHHHHh
Confidence 36788999999999999999999999999999999999 9999999999999999999976553
No 7
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.47 E-value=2.3e-14 Score=153.48 Aligned_cols=62 Identities=27% Similarity=0.434 Sum_probs=58.3
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~ 81 (851)
..||.|+.||..|+.+||+.|+.++|.+..+|.|||..| +|+++||||||||||+||||.+.
T Consensus 158 ~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L----~LtErQIKIWFQNRRMK~Kk~~k 219 (261)
T KOG0489|consen 158 KSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHAL----NLTERQIKIWFQNRRMKWKKENK 219 (261)
T ss_pred CCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhc----chhHHHHHHHHHHHHHHHHHhhc
Confidence 458889999999999999999999999999999999999 99999999999999999998543
No 8
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.44 E-value=7.3e-14 Score=152.61 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=58.8
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHH
Q 003069 15 IMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 82 (851)
Q Consensus 15 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~~ 82 (851)
+++++.|+.||..|+..||+.|++.+|.+..+|.+||+.| ||+..|||+||||||+|||+..++
T Consensus 170 kK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~L----gLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 170 KKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASL----GLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred cccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHc----CCchhhHHHHHhhhhHHHHHHHHh
Confidence 3446678889999999999999999999999999999999 999999999999999999996554
No 9
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.42 E-value=6.2e-14 Score=151.48 Aligned_cols=65 Identities=34% Similarity=0.508 Sum_probs=59.2
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHHHHHH
Q 003069 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQ 86 (851)
Q Consensus 18 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~~~~l~ 86 (851)
+|||.-||+.|+.+||+.|-.|.|.+.+.|.+|++.| +|++|||||||||||.|+||...+.+++
T Consensus 236 RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~l----NLTeRQVKIWFQNRRMK~KK~~re~r~~ 300 (308)
T KOG0487|consen 236 RKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTL----NLTERQVKIWFQNRRMKEKKVNRENRLK 300 (308)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhc----ccchhheeeeehhhhhHHhhhhhhhhcc
Confidence 6778889999999999999999999999999999999 9999999999999999999966544433
No 10
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.42 E-value=1.4e-13 Score=141.63 Aligned_cols=69 Identities=26% Similarity=0.365 Sum_probs=61.8
Q ss_pred hccccCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003069 9 EFANKQIMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (851)
Q Consensus 9 e~~~~~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~ 81 (851)
+++.++++.|+.|+.|+.-||+.|.+.|++++|.--.+|.+||+.| ||+..||||||||||.|.||.+.
T Consensus 114 ~~Ngk~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsL----GLTQTQVKIWFQNrRSK~KKl~k 182 (245)
T KOG0850|consen 114 RPNGKGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASL----GLTQTQVKIWFQNRRSKFKKLKK 182 (245)
T ss_pred ccCCCcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHh----CCchhHhhhhhhhhHHHHHHHHh
Confidence 3445555667889999999999999999999999999999999999 99999999999999999998443
No 11
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.41 E-value=1e-13 Score=149.76 Aligned_cols=65 Identities=31% Similarity=0.546 Sum_probs=58.3
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHHHHH
Q 003069 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRL 85 (851)
Q Consensus 17 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~~~~l 85 (851)
+||+|.-||..|+.+||+.|+.++|++..+|++||..| +|++.||||||||||-|.||++....+
T Consensus 153 kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~L----rLT~TQVKIWFQNrRYK~KR~~~dk~~ 217 (307)
T KOG0842|consen 153 KRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSL----RLTPTQVKIWFQNRRYKTKRQQKDKAL 217 (307)
T ss_pred ccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhc----CCCchheeeeeecchhhhhhhhhhhhh
Confidence 35556679999999999999999999999999999999 999999999999999999996655433
No 12
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.38 E-value=4.8e-13 Score=110.56 Aligned_cols=57 Identities=42% Similarity=0.722 Sum_probs=54.9
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003069 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (851)
Q Consensus 18 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kk 78 (851)
+++|++||.+|+..||..|..++||+..++..||.++ ||++.||++||||||.++|+
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l----~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKEL----GLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHH----TSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccc----cccccccccCHHHhHHHhCc
Confidence 4788999999999999999999999999999999999 99999999999999999986
No 13
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.36 E-value=6.1e-13 Score=134.66 Aligned_cols=65 Identities=31% Similarity=0.471 Sum_probs=59.1
Q ss_pred cCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003069 13 KQIMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (851)
Q Consensus 13 ~~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~ 81 (851)
+++..++.|+.||.+|+..||+-|++.+|.+..+|.+++..| .|++.||||||||||+|.||-|+
T Consensus 140 Khk~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL----~LTeTqVKIWFQNRRAKaKRlQe 204 (246)
T KOG0492|consen 140 KHKPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSL----ELTETQVKIWFQNRRAKAKRLQE 204 (246)
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhh----hhhhhheehhhhhhhHHHHHHHH
Confidence 344456778999999999999999999999999999999999 99999999999999999998543
No 14
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.36 E-value=5.2e-13 Score=121.99 Aligned_cols=61 Identities=26% Similarity=0.555 Sum_probs=56.9
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
+++|-|+.||..|+.+||+.|.+.+||+.-.|++||.++ .|++..|+|||||||+|.+|+.
T Consensus 16 KQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~ki----dLTEARVQVWFQNRRAKfRKQE 76 (125)
T KOG0484|consen 16 KQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKI----DLTEARVQVWFQNRRAKFRKQE 76 (125)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhh----hhhHHHHHHHHHhhHHHHHHHH
Confidence 446778899999999999999999999999999999999 9999999999999999999843
No 15
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.35 E-value=3.2e-13 Score=141.05 Aligned_cols=56 Identities=30% Similarity=0.532 Sum_probs=53.1
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 21 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 21 r~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
|..||..|+.+||+.|...+|.++.++.|||..| ||++|||||||||||+|+||.+
T Consensus 203 RvVYTDhQRLELEKEfh~SryITirRKSELA~~L----gLsERQVKIWFQNRRAKERK~n 258 (317)
T KOG0848|consen 203 RVVYTDHQRLELEKEFHTSRYITIRRKSELAATL----GLSERQVKIWFQNRRAKERKDN 258 (317)
T ss_pred eEEecchhhhhhhhhhccccceeeehhHHHHHhh----CccHhhhhHhhhhhhHHHHHHH
Confidence 5569999999999999999999999999999999 9999999999999999999843
No 16
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.29 E-value=2.4e-12 Score=133.91 Aligned_cols=59 Identities=32% Similarity=0.548 Sum_probs=56.8
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kk 78 (851)
.+||.|+-||.+|++.|...|+++.|.++..|++||.+| +|.+.|||+||||+|+|.||
T Consensus 245 eeKRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~EL----gLNEsQIKIWFQNKRAKiKK 303 (342)
T KOG0493|consen 245 EEKRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQEL----GLNESQIKIWFQNKRAKIKK 303 (342)
T ss_pred hhcCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh----CcCHHHhhHHhhhhhhhhhh
Confidence 457889999999999999999999999999999999999 99999999999999999998
No 17
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.26 E-value=3.4e-12 Score=129.97 Aligned_cols=58 Identities=29% Similarity=0.400 Sum_probs=54.8
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003069 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (851)
Q Consensus 18 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkr 79 (851)
||.|+.|+..|+-.||..|+..+|.+..+|.-||++| .|++.|||+||||||.|||++
T Consensus 105 KktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sL----qLTETQVKIWFQNRRnKwKRq 162 (268)
T KOG0485|consen 105 KKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASL----QLTETQVKIWFQNRRNKWKRQ 162 (268)
T ss_pred ccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhh----hhhhhhhhhhhhhhhHHHHHH
Confidence 4557779999999999999999999999999999999 999999999999999999984
No 18
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.26 E-value=5.1e-11 Score=118.70 Aligned_cols=185 Identities=24% Similarity=0.378 Sum_probs=139.4
Q ss_pred HHHHHHHHhhcCCCCceEecCCCCCCCCccceeeccCCCcceeeeeeeEEeeChhhHHHHhcC---ccchhhcCCcceee
Q 003069 172 ETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIAEILKD---CPSWFRDCRCLDVL 248 (851)
Q Consensus 172 ~am~Ell~la~~~~plWi~~~g~~~g~~~~g~~~~~~~~~~eASR~~glV~~~~~~LVe~lmD---~~~W~~~f~~~~~l 248 (851)
++..+++.+.+.+ ..|-..... .|-..+... ..+.....-|..+.|..++.++.++|+| ..+|-..|...+++
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~-~~v~vy~~~--~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl 77 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEK-DGVKIYTKP--YEDSGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVI 77 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEEC-CcEEEEEec--CCCCCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEE
Confidence 4667888887766 679886432 121111110 1122346889999999999999999999 67788888888888
Q ss_pred eeccCCCccHHHHHHHhhcccccccccceeeEEeecceeCCCcEEEEEeecCCCCCCCCCCCCCCccceeecccceEEee
Q 003069 249 SVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRP 328 (851)
Q Consensus 249 ~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~ 328 (851)
..+..+ ..++|..+..|.| +..|||.++|++.+.++|.++|+-.|+|.. ..|....++|++.++||++|++
T Consensus 78 ~~~~~~----~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~----~~p~~~~~vR~~~~~~~~~i~~ 148 (193)
T cd00177 78 EEIDEH----TDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHD----SHPKEKGYVRAEIKLSGWIIEP 148 (193)
T ss_pred EEeCCC----eEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCC----CCCCCCCcEEEEEEccEEEEEE
Confidence 887653 5677888889999 999999999999999999999999999863 2233447899999999999999
Q ss_pred cCCCceEEEEEEeeeccCCCccccchhhhhchHHHHHHHHHHHHH
Q 003069 329 CEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR 373 (851)
Q Consensus 329 ~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~aLr 373 (851)
+++|.|+||++-|+|..-+... .++++.+.-+...++..++
T Consensus 149 ~~~~~~~vt~~~~~D~~g~iP~----~~~~~~~~~~~~~~~~~~~ 189 (193)
T cd00177 149 LDPGKTKVTYVLQVDPKGSIPK----SLVNSAAKKQLASFLKDLR 189 (193)
T ss_pred CCCCCEEEEEEEeeCCCCCccH----HHHHhhhhhccHHHHHHHH
Confidence 9999999999999998865433 5555555444444444443
No 19
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.24 E-value=5.6e-12 Score=131.15 Aligned_cols=58 Identities=29% Similarity=0.556 Sum_probs=54.7
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHH
Q 003069 21 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 82 (851)
Q Consensus 21 r~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~~ 82 (851)
|+.||..|+++||+.|++.+|||...|+-||-++ .|.+.+|+|||||||+||||++..
T Consensus 145 RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~kt----elpEDRIqVWfQNRRAKWRk~Ek~ 202 (332)
T KOG0494|consen 145 RTIFTSYQLEELEKAFKEAHYPDVYAREMLADKT----ELPEDRIQVWFQNRRAKWRKTEKR 202 (332)
T ss_pred cchhhHHHHHHHHHHHhhccCccHHHHHHHhhhc----cCchhhhhHHhhhhhHHhhhhhhh
Confidence 6779999999999999999999999999999999 999999999999999999986543
No 20
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.23 E-value=7.3e-12 Score=128.53 Aligned_cols=63 Identities=24% Similarity=0.539 Sum_probs=58.9
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003069 15 IMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (851)
Q Consensus 15 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~ 81 (851)
.+.+|.|++||..|+++||..|.+..|||...|++||.+| +|.+.+|+|||.|||+|+|+++.
T Consensus 35 RkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlkl----nLpeSrVqVWFKNRRAK~r~qq~ 97 (228)
T KOG2251|consen 35 RKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKL----NLPESRVQVWFKNRRAKCRRQQQ 97 (228)
T ss_pred hhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHh----CCchhhhhhhhccccchhhHhhh
Confidence 4557889999999999999999999999999999999999 99999999999999999998543
No 21
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.21 E-value=1.4e-11 Score=122.50 Aligned_cols=67 Identities=36% Similarity=0.578 Sum_probs=60.9
Q ss_pred cccCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003069 11 ANKQIMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (851)
Q Consensus 11 ~~~~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~ 81 (851)
.+.....+++|+|.|.+|+..|++.|..+|||+...|..|+..| ||+++-|++||||||++.|+...
T Consensus 45 ~~~s~~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~l----nm~~ksVqIWFQNkR~~~k~~~~ 111 (156)
T COG5576 45 QDGSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLL----NMPPKSVQIWFQNKRAKEKKKRS 111 (156)
T ss_pred ccCCCcCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhc----CCChhhhhhhhchHHHHHHHhcc
Confidence 34445668899999999999999999999999999999999999 99999999999999999998543
No 22
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.19 E-value=2.2e-11 Score=99.83 Aligned_cols=55 Identities=42% Similarity=0.735 Sum_probs=51.6
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHH
Q 003069 19 TKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 77 (851)
Q Consensus 19 rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~K 77 (851)
+.|++++.+|+..||..|..++||+..++.+||.++ ||+.+||+.||+|||++.|
T Consensus 2 k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~----~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 2 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKL----GLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH----CcCHHHHHHhHHHHhhccC
Confidence 456789999999999999999999999999999999 9999999999999998754
No 23
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.18 E-value=3.2e-11 Score=99.50 Aligned_cols=56 Identities=43% Similarity=0.799 Sum_probs=53.4
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003069 19 TKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (851)
Q Consensus 19 rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kk 78 (851)
+++..++.+|+..||..|..++||+..++.+||.++ ||+++||+.||+|||.+.|+
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~----~l~~~qV~~WF~nrR~~~~~ 57 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKEL----GLTERQVKIWFQNRRAKLKR 57 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHhc
Confidence 566789999999999999999999999999999999 99999999999999999876
No 24
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=99.12 E-value=2.7e-11 Score=123.52 Aligned_cols=67 Identities=31% Similarity=0.456 Sum_probs=60.4
Q ss_pred ccCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHH
Q 003069 12 NKQIMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 82 (851)
Q Consensus 12 ~~~~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~~ 82 (851)
++.+.++..|..|+-.|+..||..|+..+|+-...|.+||..+ |+.+.||||||||||+|||||...
T Consensus 162 ~kdG~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~l----gmteSqvkVWFQNRRTKWRKkhAa 228 (288)
T KOG0847|consen 162 NLNGQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQEL----NMTESQVKVWFQNRRTKWRKKHAA 228 (288)
T ss_pred CcCccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccc----cccHHHHHHHHhcchhhhhhhhcc
Confidence 3445556667789999999999999999999999999999999 999999999999999999997654
No 25
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.08 E-value=2.7e-11 Score=119.01 Aligned_cols=62 Identities=26% Similarity=0.463 Sum_probs=57.4
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHHH
Q 003069 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS 83 (851)
Q Consensus 18 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~~~ 83 (851)
++-|+.|+..|+..||+.|+..+|.+..+|.+||..| +|+++|||.||||||.|.||.+++.
T Consensus 101 ~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L----~LS~~QVKTWFQNrRMK~Kk~~r~~ 162 (194)
T KOG0491|consen 101 RKARTVFSDPQLSGLEKRFERQRYLSTPERQELANAL----SLSETQVKTWFQNRRMKHKKQQRNN 162 (194)
T ss_pred hhhcccccCccccccHHHHhhhhhcccHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 4568889999999999999999999999999999999 9999999999999999999966543
No 26
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=99.06 E-value=2.6e-09 Score=110.50 Aligned_cols=195 Identities=22% Similarity=0.284 Sum_probs=139.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCCceEecCCCCCCCCccceeeccCCCcceeeeeeeEEeeChhhHHHHh-cC---ccchhhc
Q 003069 166 LLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIAEIL-KD---CPSWFRD 241 (851)
Q Consensus 166 l~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~g~~~~~~~~~~eASR~~glV~~~~~~LVe~l-mD---~~~W~~~ 241 (851)
...++++|++|++.+.. ++-|-.....+.|--.+.. .. .+ .+-.-|..++|...+..+.+.| .| +.+|-..
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~~~~i~i~~r-~~-~~-~~~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~ 80 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNTTWGDVVYSR-NV-PG-VGKVFRLTGVLDCPAEFLYNELVLNVESLPSWNPT 80 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEecCCCCEEEEE-Ec-CC-CceEEEEEEEEcCCHHHHHHHHHcCccccceecCc
Confidence 35789999999999964 5589886432112111111 11 12 2356899999999999997654 44 5789999
Q ss_pred CCcceeeeeccCCCccHHHHHHHhhccc-ccccccceeeEEeecceeCCCcEEEEEeecCCCCCCCCCCCCCCccceeec
Q 003069 242 CRCLDVLSVIPTGNGGTIELIYMQTYAP-TTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEML 320 (851)
Q Consensus 242 f~~~~~l~~~~~g~~G~lqLm~aE~~v~-SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrl 320 (851)
|-..++|+.+... ..++|.-+.-+ .++|..|||.++|+.++.+ |.++|+..|++. +..|+...++|+..+
T Consensus 81 ~~~~~~i~~~d~~----~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h----~~~P~~~g~VR~~~~ 151 (208)
T cd08868 81 VLECKIIQVIDDN----TDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEH----PAMPPTKNYVRGENG 151 (208)
T ss_pred ccceEEEEEecCC----cEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccC----CCCCCCCCeEEEecc
Confidence 9888888887632 22333222222 2589999999999999866 779999999863 334566789999999
Q ss_pred ccceEEeecCC--CceEEEEEEeeeccCCCccccchhhhhchHHHHHHHHHHHHH-HHHhh
Q 003069 321 ASGFLIRPCEG--GGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIRQI 378 (851)
Q Consensus 321 PSGclIq~~~n--G~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~aLr-~~e~l 378 (851)
++|++|+++++ +.|+|+|+-|+|..-+ +|. -++++.+.-+.-.++..|| +|+.|
T Consensus 152 ~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 152 PGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQ---YLVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred ccEEEEEECCCCCCceEEEEEEEECCCCC-Ccc---eeeehhhHHHHHHHHHHHHHHHhhC
Confidence 99999999987 6899999999998755 443 3366666667777888886 77653
No 27
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.06 E-value=1.6e-10 Score=96.96 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=50.0
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCC----CCHHHHHHHHHhCCccCCCChhhhhhhhhhhh
Q 003069 18 STKYVRYTPEQVEALERVYSECPK----PSSLRRQQLIRECPILSNIEPKQIKVWFQNRR 73 (851)
Q Consensus 18 ~rkr~r~T~~Ql~~LE~~F~~~~~----Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRR 73 (851)
+|.|+.||++|++.||..|..++| |+...|.+||.++ ||++++|||||||-+
T Consensus 2 kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~l----gl~~~vvKVWfqN~k 57 (58)
T TIGR01565 2 KRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEI----GVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHh----CCCHHHeeeecccCC
Confidence 688999999999999999999999 9999999999999 999999999999964
No 28
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.03 E-value=4.2e-09 Score=110.06 Aligned_cols=192 Identities=19% Similarity=0.288 Sum_probs=143.7
Q ss_pred HHHHHHHHHHhhcCCCCceEecCCCCCCCCccceeec-cCCCcceeeeeeeEE-eeChhhHHHHhcC---ccchhhcCCc
Q 003069 170 AEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAV-SRNCSGVAARACGLV-SLDPTKIAEILKD---CPSWFRDCRC 244 (851)
Q Consensus 170 A~~am~Ell~la~~~~plWi~~~g~~~g~~~~g~~~~-~~~~~~eASR~~glV-~~~~~~LVe~lmD---~~~W~~~f~~ 244 (851)
-++.+++|+.++..+ .-|-.... +.| +.++-. ..+...-.-|..+.+ ...+..+.+.|+| +.+|-..|-.
T Consensus 8 ~~~~~~~~~~~~~~~-~~W~~~~~-~~g---i~iy~r~~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e 82 (222)
T cd08871 8 TDADFEEFKKLCDST-DGWKLKYN-KNN---VKVWTKNPENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIE 82 (222)
T ss_pred CHHHHHHHHHHhcCC-CCcEEEEc-CCC---eEEEEeeCCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhce
Confidence 368999999999754 47987643 222 222211 122333566887765 5788999999999 4889888888
Q ss_pred ceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeecceeCCCcEEEEEeecCCCCCCCCCCCCCCccceeecccce
Q 003069 245 LDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGF 324 (851)
Q Consensus 245 ~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGc 324 (851)
.++|..+..+ ..++|..+..|-| |..|||.++|..+..+ |..+|+..|++. +..|+...++|.....+|+
T Consensus 83 ~~~ie~~d~~----~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~----~~~P~~~g~VR~~~~~~g~ 152 (222)
T cd08871 83 SFDICQLNPN----NDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKH----KKYPPRKGFVRAISLLTGY 152 (222)
T ss_pred eEEEEEcCCC----CEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccC----CCCCCCCCeEEeEEEccEE
Confidence 8888877543 3567777888888 8999999999998776 888999999974 2345566899999999999
Q ss_pred EEeecCCCceEEEEEEeeeccCCCccccchhhhhchHHHHHHHHHHHHH-HHHhhhh
Q 003069 325 LIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIRQIAQ 380 (851)
Q Consensus 325 lIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~aLr-~~e~la~ 380 (851)
+|++.+++.|+|||+-|+|..-+ +|. -+++..+.-+.-.++..|| .|+....
T Consensus 153 ~i~p~~~~~t~vt~~~~~Dp~G~-IP~---~lvN~~~~~~~~~~l~~l~k~~~~y~~ 205 (222)
T cd08871 153 LIRPTGPKGCTLTYVTQNDPKGS-LPK---WVVNKATTKLAPKVMKKLHKAALKYPE 205 (222)
T ss_pred EEEECCCCCEEEEEEEecCCCCC-cCH---HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999998865 552 4555555556667888885 7776553
No 29
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.03 E-value=1.8e-10 Score=121.56 Aligned_cols=71 Identities=32% Similarity=0.566 Sum_probs=62.4
Q ss_pred CccchhccccCC--------CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHH
Q 003069 4 TMHNKEFANKQI--------MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCR 75 (851)
Q Consensus 4 ~~~~~e~~~~~~--------~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak 75 (851)
+..+||.++... ..||.|+.+|..|++.|...|+..++|-..-|++|+.+. ||.-+.|+|||||||+|
T Consensus 146 CK~DYE~Ak~k~~~~l~gd~~nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseT----GLDMRVVQVWFQNRRAK 221 (383)
T KOG4577|consen 146 CKDDYETAKQKHCNELEGDASNKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSET----GLDMRVVQVWFQNRRAK 221 (383)
T ss_pred hhhhHHHHHhccccccccccccCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhcc----CcceeehhhhhhhhhHH
Confidence 445666653322 347889999999999999999999999999999999999 99999999999999999
Q ss_pred HHH
Q 003069 76 EKQ 78 (851)
Q Consensus 76 ~Kk 78 (851)
+|+
T Consensus 222 EKR 224 (383)
T KOG4577|consen 222 EKR 224 (383)
T ss_pred HHh
Confidence 998
No 30
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.00 E-value=7.8e-09 Score=106.84 Aligned_cols=189 Identities=23% Similarity=0.307 Sum_probs=138.5
Q ss_pred hHHHHHHHHHHHHHhhcCCCCceEecCCCCCCCCccceeec-cCCCcceeeeeeeEEeeChhhHHHHhcC-----ccchh
Q 003069 166 LLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAV-SRNCSGVAARACGLVSLDPTKIAEILKD-----CPSWF 239 (851)
Q Consensus 166 l~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~g~~~~-~~~~~~eASR~~glV~~~~~~LVe~lmD-----~~~W~ 239 (851)
+-.++++|.+|++.... .+.-|-.... +.| +.+... ..++.+-.-|..|.+..++.++++.|+| +.+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~W~~~~~-~~~---i~v~~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd 77 (206)
T cd08867 3 FKVIAEKLANEALQYIN-DTDGWKVLKT-VKN---ITVSWKPSTEFTGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWD 77 (206)
T ss_pred HHHHHHHHHHHHHHHhc-CcCCcEEEEc-CCC---cEEEEecCCCCCCEEEEEEEEEcCCHHHHHHHHHhcCcccccccc
Confidence 35689999999999987 4477988642 122 212111 1222223469999999999999999998 57899
Q ss_pred hcCCcceeeeeccCCCccHHHHHHHhhccc---ccccccceeeEEeecceeCCCcEEEEEeecCCCCCCCCCCCCCCccc
Q 003069 240 RDCRCLDVLSVIPTGNGGTIELIYMQTYAP---TTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVR 316 (851)
Q Consensus 240 ~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~---SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r 316 (851)
..|-..++|+.+..+ + .++|. ..+ .++|.+|||..+||.++.++|.++|+-.|++. |..|+.+.++|
T Consensus 78 ~~~~~~~~le~id~~---~-~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~h----p~~p~~~~~VR 147 (206)
T cd08867 78 KSLKHYEVLEKISED---L-CVGRT--ITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDI----PERPPTPGFVR 147 (206)
T ss_pred ccccceEEEEEeCCC---e-EEEEE--EccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccC----CCCCCCCCcEE
Confidence 999888888887532 2 22332 233 34799999999999999999999999999874 23556678999
Q ss_pred eeecccceEEeecC--CCceEEEEEEeeeccCCCccccchhhhhchHHHHHHHHHHHHH
Q 003069 317 AEMLASGFLIRPCE--GGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR 373 (851)
Q Consensus 317 ~rrlPSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~aLr 373 (851)
+...++|++|++.+ ++.|+|||+-|+|..- .+| +-++++.++=+.--|+..||
T Consensus 148 ~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG-~iP---~~lvn~~~~~~~~~~~~~lr 202 (206)
T cd08867 148 GYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRG-MIP---QSLVESAMPSNLVNFYTDLV 202 (206)
T ss_pred EEeecCEEEEEECCCCCCceEEEEEEEeccCC-CCc---HHHHHhhhhhhHHHHHHHHH
Confidence 99999999999986 5789999999999874 344 35565555555555666665
No 31
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=98.95 E-value=2.1e-10 Score=121.82 Aligned_cols=60 Identities=33% Similarity=0.491 Sum_probs=55.5
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003069 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (851)
Q Consensus 18 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~ 81 (851)
+|=|+-||.+||..||+.|-+..|-+...|.+||..| ||++..|||||||||.|+|++..
T Consensus 182 RRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaL----NLPEtTIKVWFQNRRMKDKRQRl 241 (408)
T KOG0844|consen 182 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAAL----NLPETTIKVWFQNRRMKDKRQRL 241 (408)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhh----CCCcceeehhhhhchhhhhhhhh
Confidence 4557789999999999999999999999999999999 99999999999999999998543
No 32
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.95 E-value=1.2e-08 Score=106.11 Aligned_cols=168 Identities=20% Similarity=0.267 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEecCCCCCCCCccceeec-cCCCcceeeeeeeEEeeChhhHHHHhcCcc---chhhcC
Q 003069 167 LAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAV-SRNCSGVAARACGLVSLDPTKIAEILKDCP---SWFRDC 242 (851)
Q Consensus 167 ~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~g~~~~-~~~~~~eASR~~glV~~~~~~LVe~lmD~~---~W~~~f 242 (851)
..++++|++|++++-. ..-.|-.-. .+.+ +.+... .+.+.+---|..|+|..++.+|+|.+.|.+ +|-..|
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~gWk~~k---~~~~-~~v~~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~ 78 (204)
T cd08904 4 KKIAQETSQEVLGYSR-DTSGWKVVK---TSKK-ITVSWKPSRKYHGNLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSL 78 (204)
T ss_pred HHHHHHHHHHHHhhhh-cccCCeEEe---cCCc-eEEEEEEcCCCCceEEEEEEEecCCHHHHHHHHhccchhhhhcccc
Confidence 5789999999999987 557887752 2221 222222 234455677999999999999999998865 455555
Q ss_pred CcceeeeeccCCCccHHHHHHHhhc-ccccccccceeeEEeecceeCCCcEEEEEeecCCCCCCCCCCCCCCccceeecc
Q 003069 243 RCLDVLSVIPTGNGGTIELIYMQTY-APTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLA 321 (851)
Q Consensus 243 ~~~~~l~~~~~g~~G~lqLm~aE~~-v~SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlP 321 (851)
-..++|+.+.... .+.|..++ .+-++|-+|||..+||.++.++|.++|+..|++. |..|+...|+|++..|
T Consensus 79 ~~~~iie~Id~~T----~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~H----p~~Pp~~g~VRa~n~~ 150 (204)
T cd08904 79 QVYKMLQRIDSDT----FICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEY----PQCPPSSNYIRGYNHP 150 (204)
T ss_pred cceeeEEEeCCCc----EEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEeccc----CCCCCCCCcEEEeeec
Confidence 5556776665432 23332222 3457899999999999999999999999999863 4566778999999999
Q ss_pred cceEEeecCCC--ceEEEEEEeeeccCC
Q 003069 322 SGFLIRPCEGG--GSIIHIVDHVDLDAW 347 (851)
Q Consensus 322 SGclIq~~~nG--~skVtwVeH~e~d~~ 347 (851)
+||+|+|.+++ +|+++|+-++|+.-+
T Consensus 151 ~G~~i~pl~~~p~~t~l~~~~~~DlkG~ 178 (204)
T cd08904 151 CGYVCSPLPENPAYSKLVMFVQPELRGN 178 (204)
T ss_pred cEEEEEECCCCCCceEEEEEEEeCCCCC
Confidence 99999999875 899999999887744
No 33
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=98.94 E-value=4.8e-10 Score=119.99 Aligned_cols=63 Identities=22% Similarity=0.489 Sum_probs=58.5
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 82 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~~ 82 (851)
+++|.|+.||.+|+++||..|+++.||+-..|++||.-. +|++..|+|||.|||+||+|++.+
T Consensus 111 KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwt----NlTE~rvrvwfknrrakwrkrErN 173 (351)
T KOG0486|consen 111 KQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKRERN 173 (351)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhc----cccchhhhhhcccchhhhhhhhhh
Confidence 446678889999999999999999999999999999999 999999999999999999997654
No 34
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=98.94 E-value=3.6e-10 Score=124.91 Aligned_cols=59 Identities=29% Similarity=0.474 Sum_probs=56.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kk 78 (851)
.+||||+.++...+..||++|.+|++|+..++.+||.+| +|+...|+|||||||.|+||
T Consensus 293 RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L----~leKEVVRVWFCNRRQkeKR 351 (398)
T KOG3802|consen 293 RKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESL----QLEKEVVRVWFCNRRQKEKR 351 (398)
T ss_pred cccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHh----ccccceEEEEeecccccccc
Confidence 457888999999999999999999999999999999999 99999999999999999998
No 35
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.80 E-value=9.4e-08 Score=99.43 Aligned_cols=188 Identities=17% Similarity=0.245 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEecCCCCCCCCccceeec-cCCCcceeeeeeeEEeeChhhHHHHhcCc-----cchhh
Q 003069 167 LAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAV-SRNCSGVAARACGLVSLDPTKIAEILKDC-----PSWFR 240 (851)
Q Consensus 167 ~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~g~~~~-~~~~~~eASR~~glV~~~~~~LVe~lmD~-----~~W~~ 240 (851)
.+++++|+++++.+-+ .+..|-..... .| +.++.. .+.+.+-.-|.-|+|..++.+|++.|+|. .+|-.
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~~W~~~~~~-~~---i~v~~~~~~~~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~ 78 (208)
T cd08903 4 AELAESVADKMLLYRR-DESGWKTCRRT-NE---VAVSWRPSAEFAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQ 78 (208)
T ss_pred HHHHHHHHHHHHhhhc-cccCCEEEEcC-CC---EEEEeeecCCCCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhh
Confidence 5789999999999875 66789875321 12 222211 11222223689999999999999999965 69999
Q ss_pred cCCcceeeeeccCCCccHHHHHHHhhccccc---ccccceeeEEeecceeCCCcEEEEEeecCCCCCCCCCCCCCCccce
Q 003069 241 DCRCLDVLSVIPTGNGGTIELIYMQTYAPTT---LAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRA 317 (851)
Q Consensus 241 ~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SP---Lvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~ 317 (851)
.|-..++|+.+.... .+.|. ..|.| +|.+|||..+|+.++.++|..+|.-.|+.. +..|+.+.|+|+
T Consensus 79 ~~~~~~vle~id~~~----~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h----~~~P~~~~~VR~ 148 (208)
T cd08903 79 NVKDFEVVEAISDDV----SVCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEH----PLCPPQAGFVRG 148 (208)
T ss_pred ccccEEEEEEecCCE----EEEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccC----CCCCCCCCeEEE
Confidence 999999998887431 11221 34555 699999999999999999998877777653 345667799999
Q ss_pred eecccceEEeecC--CCceEEEEEEeeeccCCCccccchhhhhchHHHHHHHHHHHHH
Q 003069 318 EMLASGFLIRPCE--GGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR 373 (851)
Q Consensus 318 rrlPSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~aLr 373 (851)
+..|+|++|.+.+ ++.|+|+|+-|+|.. ..+| +.++++.++=+..-++..||
T Consensus 149 ~~~~~g~~~~~~~~~~~~t~v~~~~~~Dpk-G~iP---~~lvn~~~~~~~~~~~~~Lr 202 (208)
T cd08903 149 FNHPCGCFCEPVPGEPDKTQLVSFFQTDLS-GYLP---QTVVDSFFPASMAEFYNNLT 202 (208)
T ss_pred eeeccEEEEEECCCCCCceEEEEEEEeccC-CCcC---HHHHHHHhhHHHHHHHHHHH
Confidence 9999999999996 458999999888875 3465 35554443334444555554
No 36
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.79 E-value=5.2e-08 Score=101.41 Aligned_cols=190 Identities=19% Similarity=0.236 Sum_probs=135.2
Q ss_pred hHHHHHHHHHHHHHhhcCCCCceEecCCCCCCCCccceeeccCCCcceeeeeeeEEeeChhhHHHHhc-C---ccchhhc
Q 003069 166 LLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIAEILK-D---CPSWFRD 241 (851)
Q Consensus 166 l~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~g~~~~~~~~~~eASR~~glV~~~~~~LVe~lm-D---~~~W~~~ 241 (851)
-..++++|++|++++.+ .+..|-.....+.| +.++.......+-+-|.-++|..++.+|++.|. | ..+|...
T Consensus 6 y~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~g---i~v~s~~~~~~~k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~ 81 (209)
T cd08905 6 YIKQGEEALQKSLSILQ-DQEGWKTEIVAENG---DKVLSKVVPDIGKVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPN 81 (209)
T ss_pred HHHHHHHHHHHHHHHhc-cccCCEEEEecCCC---CEEEEEEcCCCCcEEEEEEEecCCHHHHHHHHHhchhhhceeccc
Confidence 35789999999999986 56689875211222 222211111112677889999999999995555 4 3789988
Q ss_pred CCcceeeeeccCCCccHHHHHHHhhccccc--ccccceeeEEeecceeCCCcEEEEEeecCCCCCCCCCCCCCCccceee
Q 003069 242 CRCLDVLSVIPTGNGGTIELIYMQTYAPTT--LAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEM 319 (851)
Q Consensus 242 f~~~~~l~~~~~g~~G~lqLm~aE~~v~SP--Lvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rr 319 (851)
|-.+++|+.+... + -++|. ..+|.| +|..|||-.+|+.++.+++. +++..|.+. +..|+...++|++.
T Consensus 82 ~~~~~vl~~id~~---~-~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s~~~----~~~P~~~~~VR~~~ 151 (209)
T cd08905 82 VKEVKILQRIGKD---T-LITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMATHF----GLMPEQKGFIRAEN 151 (209)
T ss_pred chHHHHHhhcCCC---c-eEEEE-EeccCCCCccCccceEEEEEEEEcCCcE-EEEEEeecC----CCCCCCCCeEEEEe
Confidence 8887777776642 1 23443 456655 79999999999999886554 566677653 33556678999999
Q ss_pred cccceEEeecCC--CceEEEEEEeeeccCCCccccchhhhhchHHHHHHHHHHHHH
Q 003069 320 LASGFLIRPCEG--GGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR 373 (851)
Q Consensus 320 lPSGclIq~~~n--G~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~aLr 373 (851)
.++|++|+++++ |.|+|+|+-|+|..-+ +| ..|+++.++=+.--++..||
T Consensus 152 ~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP---~~lvN~~~~~~~~~~~~~Lr 203 (209)
T cd08905 152 GPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLR 203 (209)
T ss_pred eccEEEEEECCCCCCceEEEEEEeecCCCC-CC---HHHHHHHhHHhHHHHHHHHH
Confidence 999999999988 9999999999998766 55 35565555555556666665
No 37
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.60 E-value=1.4e-07 Score=111.55 Aligned_cols=129 Identities=25% Similarity=0.377 Sum_probs=105.6
Q ss_pred eeeeeeeEEeeChhhHHHHhcCcc----chhhcCCcceeeeeccCCCccHHHHHHHhhc--ccccccccceeeEEeecce
Q 003069 213 VAARACGLVSLDPTKIAEILKDCP----SWFRDCRCLDVLSVIPTGNGGTIELIYMQTY--APTTLAAARDFWLLRYSTS 286 (851)
Q Consensus 213 eASR~~glV~~~~~~LVe~lmD~~----~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~--v~SPLvp~Re~~fLRyckq 286 (851)
-+=|+.|+|...+.+|.|.+|+.+ +|=..|-..++|+.+.. ...++|.-++ .....+-+|||+++||-+.
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~----htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr 302 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDG----HTAILYHRLQLDWFPMFVWPRDLCYVRYWRR 302 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEecC----CeEEEEEEeccccccCccCcceeEEEEEEEE
Confidence 567889999999999999999776 88888888888887743 3334443332 3345677799999999999
Q ss_pred eCCCcEEEEEeecCCCCCCCCCCCCCCccceeecccceEEeecC--C--CceEEEEEEeeeccCCCc
Q 003069 287 LEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCE--G--GGSIIHIVDHVDLDAWSV 349 (851)
Q Consensus 287 ~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~--n--G~skVtwVeH~e~d~~~v 349 (851)
.+||+++|+=+|+.. +.-|+...|+|++..|+||+|.|++ + -.|.|+|+-|+|+.-|..
T Consensus 303 ~eDGsYvil~~Sv~H----p~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~ 365 (719)
T PLN00188 303 NDDGSYVVLFRSREH----ENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV 365 (719)
T ss_pred cCCCcEEEeeeeeec----CCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccc
Confidence 999999999999874 4456778999999999999999964 3 389999999999999975
No 38
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.60 E-value=2.3e-08 Score=104.03 Aligned_cols=61 Identities=25% Similarity=0.451 Sum_probs=57.0
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
..++.|+.|+..|+++||+.|++.+||+...|+.||..+ ++++..|++||||||+|+++++
T Consensus 59 ~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~----~~~e~rVqvwFqnrrak~r~~~ 119 (235)
T KOG0490|consen 59 SKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLL----TGDEFRVQVWFQNRRAKDRKEE 119 (235)
T ss_pred cccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcC----CCCeeeeehhhhhhcHhhhhhh
Confidence 346778899999999999999999999999999999999 9999999999999999999854
No 39
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.59 E-value=3.4e-07 Score=94.51 Aligned_cols=166 Identities=25% Similarity=0.351 Sum_probs=124.6
Q ss_pred HHHHHHHHHhhcCCCCceEecCCCCCCCCcccee--eccCCCcceeeeeeeEEeeChhhHHHHhcC-ccchhhcCCccee
Q 003069 171 EETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIV--AVSRNCSGVAARACGLVSLDPTKIAEILKD-CPSWFRDCRCLDV 247 (851)
Q Consensus 171 ~~am~Ell~la~~~~plWi~~~g~~~g~~~~g~~--~~~~~~~~eASR~~glV~~~~~~LVe~lmD-~~~W~~~f~~~~~ 247 (851)
+.+.++||+-+...+.-|.-... +.| +.+. +...++...+=|..+.|...+.++++.++| +.+|-..|-..++
T Consensus 4 ~~~~~~ll~~~~~~~~~W~~~~~-~~g---i~I~~k~~~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~Wd~~~~~~~v 79 (197)
T cd08869 4 ERCVQDLLREARDKSKGWVSVSS-SDH---VELAFKKVDDGHPLRLWRASTEVEAPPEEVLQRILRERHLWDDDLLQWKV 79 (197)
T ss_pred HHHHHHHHHHHhhccCCceEEec-CCc---EEEEEEeCCCCCcEEEEEEEEEeCCCHHHHHHHHHHHHhccchhhheEEE
Confidence 56788999999988999987543 122 2222 222344456779999999999999886665 5678888888888
Q ss_pred eeeccCCCccHHHHHHHhhcccccccccceeeEEeecce-eCCCcEEEEEeecCCCCCCCCCCCCCCccceeecccceEE
Q 003069 248 LSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTS-LEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLI 326 (851)
Q Consensus 248 l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq-~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclI 326 (851)
|+.+... ..+.|..+..|-| +++|||..+|+++. .++|..+|.=.|++... ..|+ +++|++.+++|++|
T Consensus 80 ie~id~~----~~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~---~~p~--g~VR~~~~~~g~~i 149 (197)
T cd08869 80 VETLDED----TEVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTE---PVPL--GGVRAVVLASRYLI 149 (197)
T ss_pred EEEecCC----cEEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCC---CCCC--CCEEEEEEeeeEEE
Confidence 8888643 2345555566766 59999999999874 78889999999986421 1222 89999999999999
Q ss_pred eecCCCceEEEEEEeeeccCCCccc
Q 003069 327 RPCEGGGSIIHIVDHVDLDAWSVPE 351 (851)
Q Consensus 327 q~~~nG~skVtwVeH~e~d~~~v~~ 351 (851)
+|.++|.|+||++-|+|..- .+|.
T Consensus 150 ~p~~~~~t~vty~~~~Dp~G-~iP~ 173 (197)
T cd08869 150 EPCGSGKSRVTHICRVDLRG-RSPE 173 (197)
T ss_pred EECCCCCeEEEEEEEECCCC-CCCc
Confidence 99999999999999998753 4553
No 40
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.58 E-value=9.4e-07 Score=92.20 Aligned_cols=190 Identities=18% Similarity=0.204 Sum_probs=130.2
Q ss_pred hHHHHHHHHHHHHHhhcCCCCceEecCCCCCCCCccceeeccCCCcceeeeeeeEEeeChhhHH-HHhcCc---cchhhc
Q 003069 166 LLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIA-EILKDC---PSWFRD 241 (851)
Q Consensus 166 l~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~g~~~~~~~~~~eASR~~glV~~~~~~LV-e~lmD~---~~W~~~ 241 (851)
....+++||+++.++... +..|.-....+.| +.++-......+-+=|.-++|...+..|. +.|.|. .+|-..
T Consensus 6 ~~~~~~~~~~~~~~~l~~-~~~W~l~~~~~~g---i~V~s~~~~~~~~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~ 81 (209)
T cd08906 6 YVRQGKEALAVVEQILAQ-EENWKFEKNNDNG---DTVYTLEVPFHGKTFILKAFMQCPAELVYQEVILQPEKMVLWNKT 81 (209)
T ss_pred HHHHHHHHHHHHHHHhhc-ccCCEEEEecCCC---CEEEEeccCCCCcEEEEEEEEcCCHHHHHHHHHhChhhccccCcc
Confidence 356789999999999764 4579853211223 22221111111233488888888998885 677776 567777
Q ss_pred CCcceeeeeccCCCccHHHHHHHhhccccc--ccccceeeEEeecceeCCCcEEEEEeecCCCCCCCCCCCCCCccceee
Q 003069 242 CRCLDVLSVIPTGNGGTIELIYMQTYAPTT--LAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEM 319 (851)
Q Consensus 242 f~~~~~l~~~~~g~~G~lqLm~aE~~v~SP--Lvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rr 319 (851)
+-..++|..+.... -+.| +.-.|.+ .|..|||-.+|+.++.++| ++++..|++. +..|+...|+|.+.
T Consensus 82 ~~~~~vi~~~~~~~----~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~----~~~P~~~~~VR~~~ 151 (209)
T cd08906 82 VSACQVLQRVDDNT----LVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTH----SHKPPLSKYVRGEN 151 (209)
T ss_pred chhhhheeeccCCc----EEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEec----CCCCCCCCeEEEee
Confidence 77777877766421 2234 4444443 6899999999999998888 6778888864 24566779999999
Q ss_pred cccceEEeec--CCCceEEEEEEeeeccCCCccccchhhhhchHHHHHHHHHHHHH
Q 003069 320 LASGFLIRPC--EGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR 373 (851)
Q Consensus 320 lPSGclIq~~--~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~aLr 373 (851)
.++|++|++. .+|.|+|||+-|+|..- .+| +.++++.++=+.--++..||
T Consensus 152 ~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G-~lP---~~lvN~~~~~~~~~~~~~LR 203 (209)
T cd08906 152 GPGGFVVLKSASNPSVCTFIWILNTDLKG-RLP---RYLIHQSLAATMFEFASHLR 203 (209)
T ss_pred eccEEEEEECCCCCCceEEEEEEecCCCC-CCC---HHHHHHHHHHHHHHHHHHHH
Confidence 9999999985 57799999999998775 455 35666555545555556664
No 41
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.56 E-value=3.4e-07 Score=95.29 Aligned_cols=128 Identities=25% Similarity=0.339 Sum_probs=98.0
Q ss_pred eeeeeeeEEeeChhhH-HHHhcCccchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeecce-eCCC
Q 003069 213 VAARACGLVSLDPTKI-AEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTS-LEDG 290 (851)
Q Consensus 213 eASR~~glV~~~~~~L-Ve~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq-~~~G 290 (851)
-.-|....|.-.+..+ -.++.++.+|-..|-...+|+.+... ..+.|--+.-|-|+ |.|||+.+|+-++ +++|
T Consensus 52 k~~r~~~ei~~~p~~VL~~vl~~R~~WD~~~~~~~~ie~ld~~----tdi~~y~~~~~~P~-~~RD~v~~R~w~~~~~~G 126 (205)
T cd08909 52 RLWKVSVEVEAPPSVVLNRVLRERHLWDEDFLQWKVVETLDKQ----TEVYQYVLNCMAPH-PSRDFVVLRSWRTDLPKG 126 (205)
T ss_pred EEEEEEEEeCCCHHHHHHHHHhhHhhHHhhcceeEEEEEeCCC----cEEEEEEeecCCCC-CCCEEEEEEEEEEeCCCC
Confidence 4667777777777776 44677889999999888888877642 22233333345565 9999999999765 5799
Q ss_pred cEEEEEeecCCCCCCCCCCCCCCccceeecccceEEeecCCCceEEEEEEeeeccCCCccc
Q 003069 291 SLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPE 351 (851)
Q Consensus 291 ~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~ 351 (851)
..+|+..|++... .|+ .+++|+..+-+|++|+|+++|.|+||++-|+|..-+ +|.
T Consensus 127 ~~vi~~~Sv~H~~----~p~-~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~-~P~ 181 (205)
T cd08909 127 ACSLVSVSVEHEE----APL-LGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGH-SPE 181 (205)
T ss_pred cEEEEEecCCCCc----CCC-CCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCC-ChH
Confidence 9999999998643 233 378999999999999999999999999999987543 453
No 42
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.34 E-value=4.3e-07 Score=101.77 Aligned_cols=59 Identities=31% Similarity=0.666 Sum_probs=55.7
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 18 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
+|+|+.|++.|++.||+.|+.++||+...|++||.+. ++++..|++||+|||+|++|..
T Consensus 177 rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i----~l~e~riqvwf~nrra~~rr~~ 235 (354)
T KOG0849|consen 177 RRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKET----GLPEPRVQVWFQNRRAKWRRQH 235 (354)
T ss_pred cccccccccchHHHHHHHhcCCCCCchhhHHHHhhhc----cCCchHHHHHHhhhhhhhhhcc
Confidence 5667899999999999999999999999999999999 9999999999999999999843
No 43
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.29 E-value=2.8e-07 Score=97.86 Aligned_cols=61 Identities=21% Similarity=0.435 Sum_probs=57.4
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
.+||||+.+.......||.+|..+|.|+.+....+|.+| .|....|+|||+|.|.|.||.+
T Consensus 308 ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekL----DLKKNVVRVWFCNQRQKQKRm~ 368 (385)
T KOG1168|consen 308 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKL----DLKKNVVRVWFCNQRQKQKRMK 368 (385)
T ss_pred ccccccccccCcccccHHHHhccCCCCchhHHHHHHHhh----hhhhceEEEEeeccHHHHHHhh
Confidence 458899999999999999999999999999999999999 9999999999999999999854
No 44
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.21 E-value=8.6e-06 Score=84.35 Aligned_cols=177 Identities=16% Similarity=0.250 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEecCCCCCCCCccceeeccCCCcceeeeeeeEEeeChhhHHHHhcC---ccchhhcCC
Q 003069 167 LAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIAEILKD---CPSWFRDCR 243 (851)
Q Consensus 167 ~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~g~~~~~~~~~~eASR~~glV~~~~~~LVe~lmD---~~~W~~~f~ 243 (851)
..+|.+.-+++++--+-++-.|-.-... +.-++-..| +.-+.+---|.-|+|.-.+..|++.+-+ +.+|=+.+-
T Consensus 4 ~~~~~~~~~~~~~y~~~~~~~Wkl~k~~--~~~~v~~k~-~~ef~gkl~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~ 80 (202)
T cd08902 4 ASKTTKLQNTLIQYHSILEEEWRVAKKS--KDVTVWRKP-SEEFGGYLYKAQGVVEDVYNRIVDHIRPGPYRLDWDSLMT 80 (202)
T ss_pred HHHHHHHHHHHHHhccccccCcEEEEeC--CCEEEEEec-CCcCCCceEEEEEEecCCHHHHHHHHhcccchhcccchhh
Confidence 4677777788888766689999775321 111111111 2234455678889999999999999999 559999888
Q ss_pred cceeeeeccCCCccHHHHH-HHhhcccccccccceeeEEeecceeCCCcEEEEEeecCCCCCCCCCCCCCCccceeeccc
Q 003069 244 CLDVLSVIPTGNGGTIELI-YMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLAS 322 (851)
Q Consensus 244 ~~~~l~~~~~g~~G~lqLm-~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPS 322 (851)
..++|+.|..+ + .++ |.=.-.+-++|-+|||.-+||+++-++|. ..|=||++.- .+|+ .|+|++..|+
T Consensus 81 ~~~Iie~Id~d---t-~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~----~~pp--g~VRgen~p~ 149 (202)
T cd08902 81 SMDIIEEFEEN---C-CVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYE----EARP--NFVRGFNHPC 149 (202)
T ss_pred heeHhhhhcCC---c-EEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCC----CCCC--CeEeeccccc
Confidence 77777665543 1 111 22223566789999999999999999998 7778887742 2232 8999999999
Q ss_pred ceEEeecCCC--ceEEEEEEeeeccCCCccccchhhhhchH
Q 003069 323 GFLIRPCEGG--GSIIHIVDHVDLDAWSVPEVLRPLYESSK 361 (851)
Q Consensus 323 GclIq~~~nG--~skVtwVeH~e~d~~~v~~l~rpl~~Sg~ 361 (851)
||++.|.+|| .|+.||+-++|+.-+ +| +-++++.+
T Consensus 150 g~i~~Pl~~~p~k~~~t~~lq~DLkG~-LP---qsiIdq~~ 186 (202)
T cd08902 150 GWFCVPLKDNPSHSLLTGYIQTDLRGM-LP---QSAVDTAM 186 (202)
T ss_pred EEEEEECCCCCCceEEEEEEEecCCCC-cc---HHHHHHHh
Confidence 9999999998 677889999888754 33 34554433
No 45
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=98.11 E-value=1.3e-05 Score=83.58 Aligned_cols=167 Identities=21% Similarity=0.297 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHhhcCCCCceEecCCCCCCCCccceeec--cCCCcceeeeeeeEEeeChhhHHHHhc-CccchhhcCCcc
Q 003069 169 VAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAV--SRNCSGVAARACGLVSLDPTKIAEILK-DCPSWFRDCRCL 245 (851)
Q Consensus 169 ~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~g~~~~--~~~~~~eASR~~glV~~~~~~LVe~lm-D~~~W~~~f~~~ 245 (851)
.-++.+++|++.|..--=-|+.... .+...+..+ +.|..--.-|....+.-.+.+++..|+ ++.+|-..|-..
T Consensus 10 ~~~~~~~~l~~e~~~k~k~w~~~~~----~~~~el~~~k~~~gs~l~~~r~~~~i~a~~~~vl~~lld~~~~Wd~~~~e~ 85 (204)
T cd08908 10 FLQDCVDGLFKEVKEKFKGWVSYST----SEQAELSYKKVSEGPPLRLWRTTIEVPAAPEEILKRLLKEQHLWDVDLLDS 85 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccCC----CCcEEEEEeccCCCCCcEEEEEEEEeCCCHHHHHHHHHhhHHHHHHHhhhe
Confidence 3467777888877754445655321 121212111 223333466777888888888885444 567899999988
Q ss_pred eeeeeccCCCccHHHHHHHhhcccccccccceeeEEeecc-eeCCCcEEEEEeecCCCCCCCCCCCCCCccceeecccce
Q 003069 246 DVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYST-SLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGF 324 (851)
Q Consensus 246 ~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyck-q~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGc 324 (851)
++|+-++... .+.|..+..|-| +|.|||.++|-.+ +.++|..+|+-.|++.. ..| . .++|++.+-+|+
T Consensus 86 ~vIe~ld~~~----~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~----~~P-~-~~VR~~~~~~~w 154 (204)
T cd08908 86 KVIEILDSQT----EIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHD----RAP-V-AGVRVNVLLSRY 154 (204)
T ss_pred EeeEecCCCc----eEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCcc----cCC-c-CceEEEEEeeEE
Confidence 9998887532 345666678888 7999999997765 58999999999999853 223 2 268999999999
Q ss_pred EEeecCCCceEEEEEEeeeccCCCccc
Q 003069 325 LIRPCEGGGSIIHIVDHVDLDAWSVPE 351 (851)
Q Consensus 325 lIq~~~nG~skVtwVeH~e~d~~~v~~ 351 (851)
+|+|+++|.|+||.+-|+|-.- .+|.
T Consensus 155 ~i~P~g~g~t~vtyi~~~DPgG-~iP~ 180 (204)
T cd08908 155 LIEPCGSGKSKLTYMCRIDLRG-HMPE 180 (204)
T ss_pred EEEECCCCcEEEEEEEEeCCCC-CCcH
Confidence 9999999999999999998643 4553
No 46
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.03 E-value=4e-06 Score=89.04 Aligned_cols=51 Identities=25% Similarity=0.533 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003069 24 YTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (851)
Q Consensus 24 ~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kk 78 (851)
|-..-+..|..+|..++||++.++.+||+.. ||+..||-.||.|||.|+|-
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aT----gLt~tQVsNWFKNRRQRDRa 233 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEAT----GLTITQVSNWFKNRRQRDRA 233 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHh----CCchhhhhhhhhhhhhhhhh
Confidence 4555678999999999999999999999999 99999999999999999883
No 47
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=98.03 E-value=2.5e-05 Score=81.59 Aligned_cols=126 Identities=22% Similarity=0.299 Sum_probs=93.2
Q ss_pred eeeeEEeeChhhHHHHhcCc---cchhhcCCcceeeeeccCCCccHHHHHHHhhcccccc-cccceeeEEeecceeCCCc
Q 003069 216 RACGLVSLDPTKIAEILKDC---PSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTL-AAARDFWLLRYSTSLEDGS 291 (851)
Q Consensus 216 R~~glV~~~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPL-vp~Re~~fLRyckq~~~G~ 291 (851)
|.-+.|...+.+|.+.|.|. .+|-.++...++|+.+.... .++|.....|=|+ ++.|||..+|-....+++.
T Consensus 48 ~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~----~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~ 123 (205)
T cd08874 48 LGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDI----CLVYLVHETPLCLLKQPRDFCCLQVEAKEGELS 123 (205)
T ss_pred EEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCe----EEEEEEecCCCCCCCCCCeEEEEEEEEECCCcE
Confidence 44568899999999999885 57888999999998766432 2333333333333 3999999999554544444
Q ss_pred EEEEEeecCCCCCCCCCCCCC-CccceeecccceEEeec---CCCceEEEEEEeeeccCCCcc
Q 003069 292 LVVCERSLTSSTGGPTGPPPS-SFVRAEMLASGFLIRPC---EGGGSIIHIVDHVDLDAWSVP 350 (851)
Q Consensus 292 waVvDvSld~~~~~~~~~~~~-~~~r~rrlPSGclIq~~---~nG~skVtwVeH~e~d~~~v~ 350 (851)
+|.=.|++. +..|+.. .++|.+.+++|++|+++ ++|.|+||.+-|+|.--..+|
T Consensus 124 -vi~~~SV~~----~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP 181 (205)
T cd08874 124 -VVACQSVYD----KSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVP 181 (205)
T ss_pred -EEEEEeccc----ccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCC
Confidence 466677764 3344454 79999999999999999 999999999999998755566
No 48
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.90 E-value=0.00014 Score=75.74 Aligned_cols=167 Identities=20% Similarity=0.293 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHhhcCCCCceEecCCCCCCCCccceeeccCCCcceeeeeeeEE-eeChhhHHHHhcCccchhhcCCccee
Q 003069 169 VAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLV-SLDPTKIAEILKDCPSWFRDCRCLDV 247 (851)
Q Consensus 169 ~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~g~~~~~~~~~~eASR~~glV-~~~~~~LVe~lmD~~~W~~~f~~~~~ 247 (851)
.-++.+++|++.++...--|+...+ +.+-+.. ....+.|..---=|.+.-| ...+.-|-++|.|+..|=+.+-...+
T Consensus 10 ~l~~~~~~~lre~~ek~kgW~~~~~-~~~vev~-~kk~~d~~~l~lwk~s~ei~~~p~~vl~rvL~dR~~WD~~m~e~~~ 87 (205)
T cd08907 10 YLEDNVQCLLREASERFKGWHSAPG-PDNTELA-CKKVGDGHPLRLWKVSTEVEAPPSVVLQRVLRERHLWDEDLLHSQV 87 (205)
T ss_pred HHHHHHHHHHHHhhhccCCceeecC-CCCcEEE-EEeCCCCCceEEEEEEEEecCCCHHHHHHHhhchhhhhHHHHhhhh
Confidence 4578889999999987888988533 1222211 0001111111111222222 23556678999999999998866556
Q ss_pred eeeccCCCccHHHHHHHhhccc--ccccccceeeEEeecc-eeCCCcEEEEEeecCCCCCCCCCCCCCCccceeecccce
Q 003069 248 LSVIPTGNGGTIELIYMQTYAP--TTLAAARDFWLLRYST-SLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGF 324 (851)
Q Consensus 248 l~~~~~g~~G~lqLm~aE~~v~--SPLvp~Re~~fLRyck-q~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGc 324 (851)
|+.+...+. -. -|+. .+.+|+|||.+||.-+ .+..|.-+|+.+|++... .++... +|+--+-|||
T Consensus 88 Ie~Ld~n~d-I~------yY~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~----~pp~~g-VRa~~l~sgY 155 (205)
T cd08907 88 IEALENNTE-VY------HYVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDN----PQLEAG-VRAVLLTSQY 155 (205)
T ss_pred heeecCCCE-EE------EEEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCc----CCCCCC-eEEEEEeccE
Confidence 655543211 00 0222 2568999999999865 477889999999998643 333334 9999999999
Q ss_pred EEeecCCCceEEEEEEeeeccCCCcc
Q 003069 325 LIRPCEGGGSIIHIVDHVDLDAWSVP 350 (851)
Q Consensus 325 lIq~~~nG~skVtwVeH~e~d~~~v~ 350 (851)
||++++.|.|+||-+-|++..-+ .|
T Consensus 156 lIep~g~g~s~ltyi~rvD~rG~-~P 180 (205)
T cd08907 156 LIEPCGMGRSRLTHICRADLRGR-SP 180 (205)
T ss_pred EEEECCCCCeEEEEEEEeCCCCC-Cc
Confidence 99999999999999999987544 44
No 49
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=97.89 E-value=9.8e-05 Score=77.01 Aligned_cols=174 Identities=17% Similarity=0.241 Sum_probs=119.0
Q ss_pred CCCceEecCCCCCCCCccceee-ccCCCcceeeeeeeEEe-eChhhHHHHhcCc---cchhhcCCcceeeeeccCCCccH
Q 003069 184 TAVDWVQMIGMKPGPDSIGIVA-VSRNCSGVAARACGLVS-LDPTKIAEILKDC---PSWFRDCRCLDVLSVIPTGNGGT 258 (851)
Q Consensus 184 ~~plWi~~~g~~~g~~~~g~~~-~~~~~~~eASR~~glV~-~~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~G~ 258 (851)
+.+.|-...+. .| +.++- ...+...-.=|+.+.+. ..+..|.++|+|. .+|...+-. ++...+.+
T Consensus 23 ~~~~W~l~~~~-~~---i~Vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~--~~~~~~~~---- 92 (207)
T cd08910 23 DGAAWELLVES-SG---ISIYRLLDEQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKE--LYEKECDG---- 92 (207)
T ss_pred CCCCeEEEEec-CC---eEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh--heeecCCC----
Confidence 45779886432 22 21111 01233334678888888 7999999999995 567766543 44433332
Q ss_pred HHHHHHhhcccccccccceeeEEeecc-eeCCC--cEEEEEeecCCCCCCCCCCCCCCccceeecccceEEeecCCCceE
Q 003069 259 IELIYMQTYAPTTLAAARDFWLLRYST-SLEDG--SLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSI 335 (851)
Q Consensus 259 lqLm~aE~~v~SPLvp~Re~~fLRyck-q~~~G--~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~sk 335 (851)
-.++|..+..|-| +..||+.++|-.. ...+| .|+|+..|++. |..|....++|....-+|++|++..++.|+
T Consensus 93 ~~i~y~~~k~PwP-vs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~----p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~ 167 (207)
T cd08910 93 ETVIYWEVKYPFP-LSNRDYVYIRQRRDLDVEGRKIWVILARSTSL----PQLPEKPGVIRVKQYKQSLAIESDGKKGSK 167 (207)
T ss_pred CEEEEEEEEcCCC-CCCceEEEEEEeccccCCCCeEEEEEecCCCC----CCCCCCCCCEEEEEEEEEEEEEeCCCCceE
Confidence 2456778888999 9999999986443 33344 68888888763 344556689999999999999999999999
Q ss_pred EEEEEeeeccCCCccccchhhhhchHHHHHHHHHHHHH-HHH
Q 003069 336 IHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIR 376 (851)
Q Consensus 336 VtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~aLr-~~e 376 (851)
|+++-|.|-. ..+|. -+++.....+.-.++..|| .|.
T Consensus 168 i~~~~~~DPg-G~IP~---wlvN~~~~~~~~~~l~~l~ka~~ 205 (207)
T cd08910 168 VFMYYFDNPG-GMIPS---WLINWAAKNGVPNFLKDMQKACQ 205 (207)
T ss_pred EEEEEEeCCC-CcchH---HHHHHHHHHhhHHHHHHHHHHHh
Confidence 9999999853 34552 3555555556667777776 554
No 50
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=97.87 E-value=0.00011 Score=64.66 Aligned_cols=101 Identities=13% Similarity=0.113 Sum_probs=81.7
Q ss_pred CCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeEEcCCCCeE
Q 003069 742 SDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRAV 821 (851)
Q Consensus 742 ~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf 821 (851)
|.+|++++.+ =.++|+|.+++++|+++-+++.+.+...-..+..+.+..+.+.++.++|-...+.-.-..+.|+.+
T Consensus 1 p~~i~i~d~~----g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~ 76 (104)
T PF13426_consen 1 PDGIFILDPD----GRILYVNPAFERLFGYSREELIGKSISDFFPEEDRPEFEEQIERALEEGGSWSGEVRLRRKDGETF 76 (104)
T ss_dssp -SEEEEEETT----SBEEEE-HHHHHHHTS-HHHHTTSBGGGGCSTTSCHHHHHHHHHHHHHTSSEEEEEEEEETTSEEE
T ss_pred CEEEEEECCc----CcEEehhHHHHHHHCcCHHHHcCCCcccccCcccchhhHHHHHHHHhcCCceeEEEEEEcCCCCEE
Confidence 5666666654 689999999999999999999999998888777777777888888887766777777778999999
Q ss_pred EEcceEEeEeecCCCCeeEEEEeecC
Q 003069 822 SYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 822 ~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
++ ...+-.+.|++|+..|..+++.|
T Consensus 77 ~~-~~~~~~i~~~~g~~~~~i~~~~D 101 (104)
T PF13426_consen 77 WV-EVSASPIRDEDGEITGIIGIFRD 101 (104)
T ss_dssp EE-EEEEEEEEETTSSEEEEEEEEEE
T ss_pred EE-EEEEEEEECCCCCEEEEEEEEEE
Confidence 88 56888999999999998888765
No 51
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.71 E-value=0.00074 Score=70.32 Aligned_cols=191 Identities=18% Similarity=0.247 Sum_probs=137.1
Q ss_pred HHHHHHHHhhcCC--CCceEecCCCCCCCCc-cceeec-cCCCcceeeeeeeEE-eeChhhHHHHhcCc---cchhhcCC
Q 003069 172 ETLAEFLSKATGT--AVDWVQMIGMKPGPDS-IGIVAV-SRNCSGVAARACGLV-SLDPTKIAEILKDC---PSWFRDCR 243 (851)
Q Consensus 172 ~am~Ell~la~~~--~plWi~~~g~~~g~~~-~g~~~~-~~~~~~eASR~~glV-~~~~~~LVe~lmD~---~~W~~~f~ 243 (851)
+=++||+...+.. ...|-.... |.|+.. +.+.-. ..+...-.=|..+++ .+.+..|.+.|+|. .+|-..|-
T Consensus 6 ~d~~~~~~~~~~~~~~~~W~~~~~-k~~~~~~i~vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~ 84 (209)
T cd08870 6 EDLRDLVQELQEGAEGQAWQQVMD-KSTPDMSYQAWRRKPKGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVI 84 (209)
T ss_pred HHHHHHHHHhcCcCCCCcceEhhh-ccCCCceEEEEecccCCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhhee
Confidence 3345666665543 257988754 234322 322211 122333467888888 57999999999995 57888888
Q ss_pred cceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeecceeCCCcEEEEEeecCCCCCCCCCCCCCCccceeecccc
Q 003069 244 CLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASG 323 (851)
Q Consensus 244 ~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSG 323 (851)
..++|+.... .| ..++|..+..|-|+ -.||+-..|-..+..+|..+|+=.|++. +..|.. .++|.+..=||
T Consensus 85 ~~~~le~~~~--~~-~~i~y~~~~~P~P~-s~RD~V~~r~~~~~~~~~~~i~~~sv~~----~~~P~~-~~vRv~~~~~~ 155 (209)
T cd08870 85 EHETLEEDEK--SG-TEIVRWVKKFPFPL-SDREYVIARRLWESDDRSYVCVTKGVPY----PSVPRS-GRKRVDDYESS 155 (209)
T ss_pred eEEEEEecCC--CC-cEEEEEEEECCCcC-CCceEEEEEEEEEcCCCEEEEEEeCCcC----CCCCCC-CcEEEEEEEeE
Confidence 8888876442 12 35678888899888 9999999987777778999888888774 233444 78999999999
Q ss_pred eEEeec--CCCceEEEEEEeeeccCCCccccchhhhhchHHHHHHHHHHHHH-HHH
Q 003069 324 FLIRPC--EGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIR 376 (851)
Q Consensus 324 clIq~~--~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~aLr-~~e 376 (851)
++|++. .+|.++|+++-|.+- ...+| .-|++.....|.-.++..|| .|+
T Consensus 156 ~~i~p~~~~~~~t~~~~~~~~dp-~G~IP---~wlvN~~~~~~~~~~l~~l~~a~~ 207 (209)
T cd08870 156 LVIRAVKGDGQGSACEVTYFHNP-DGGIP---RELAKLAVKRGMPGFLKKLENALR 207 (209)
T ss_pred EEEEEecCCCCceEEEEEEEECC-CCCCC---HHHHHHHHHhhhHHHHHHHHHHHh
Confidence 999999 789999999999973 33566 35677777778888888886 664
No 52
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.67 E-value=2.4e-05 Score=82.62 Aligned_cols=57 Identities=30% Similarity=0.582 Sum_probs=53.6
Q ss_pred CCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003069 18 STKYVRYTPEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (851)
Q Consensus 18 ~rkr~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kk 78 (851)
+|||..|+..-.++|..+|.. +|||+...+++||+++ ||+..||-.||.|+|-+.||
T Consensus 189 rRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqC----nItvsQvsnwfgnkrIrykK 248 (334)
T KOG0774|consen 189 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQC----NITVSQVSNWFGNKRIRYKK 248 (334)
T ss_pred HHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHc----Cceehhhccccccceeehhh
Confidence 578889999999999999975 5999999999999999 99999999999999999887
No 53
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.67 E-value=0.00029 Score=75.06 Aligned_cols=169 Identities=17% Similarity=0.210 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHhhcC--CCCceEecCCCCCCCCccceeec-cCCCcceeeeeeeEEe-eChhhHHHHhcCcc---chhhc
Q 003069 169 VAEETLAEFLSKATG--TAVDWVQMIGMKPGPDSIGIVAV-SRNCSGVAARACGLVS-LDPTKIAEILKDCP---SWFRD 241 (851)
Q Consensus 169 ~A~~am~Ell~la~~--~~plWi~~~g~~~g~~~~g~~~~-~~~~~~eASR~~glV~-~~~~~LVe~lmD~~---~W~~~ 241 (851)
.-++-.+|.+++|.. ++..|--... +.|--++.. +. ..|.....=|+.++|. ..+..+.+.|.|.+ +|-..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~W~l~~~-~~gikVy~r-~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~ 84 (235)
T cd08872 7 EVDEKVQEQLTYALEDVGADGWQLFAE-EGEMKVYRR-EVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETT 84 (235)
T ss_pred HHHHHHHHHHHHHHccCCCCCCEEEEe-CCceEEEEE-ECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhh
Confidence 446778899999984 4667877532 112111111 11 0122223568888888 88999999999975 67667
Q ss_pred CCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeecceeCC-------CcEEEEEeecCCCCCCCCCCCCCCc
Q 003069 242 CRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLED-------GSLVVCERSLTSSTGGPTGPPPSSF 314 (851)
Q Consensus 242 f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~-------G~waVvDvSld~~~~~~~~~~~~~~ 314 (851)
|-..++|+.++.+. .+.|..+-.|=| +..|||.++|+.++.++ +.|+||..|++. +..|+...+
T Consensus 85 ~~~~~vie~l~~~~----~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h----~~~P~~~g~ 155 (235)
T cd08872 85 LENFHVVETLSQDT----LIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDH----DSAPLNNKC 155 (235)
T ss_pred hheeEEEEecCCCC----EEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEecccC----ccCCCCCCe
Confidence 77778888777532 234666667888 69999999999998876 789999999874 334556688
Q ss_pred cceee---cccceEEeec--------CCCceEEEEEEeeeccCCC
Q 003069 315 VRAEM---LASGFLIRPC--------EGGGSIIHIVDHVDLDAWS 348 (851)
Q Consensus 315 ~r~rr---lPSGclIq~~--------~nG~skVtwVeH~e~d~~~ 348 (851)
+|++. +=.|.+|.+= .||.|+||++-|++-.-+.
T Consensus 156 VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG~i 200 (235)
T cd08872 156 VRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGGWA 200 (235)
T ss_pred EEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCCCc
Confidence 88875 2334344331 5889999999999755443
No 54
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.58 E-value=0.00095 Score=69.64 Aligned_cols=175 Identities=18% Similarity=0.224 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCceEecCCCCCCCCccceeec-cCCCcceeeeeeeEEeeChhhHHHHhcCccc---hhhcC
Q 003069 167 LAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAV-SRNCSGVAARACGLVSLDPTKIAEILKDCPS---WFRDC 242 (851)
Q Consensus 167 ~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~g~~~~-~~~~~~eASR~~glV~~~~~~LVe~lmD~~~---W~~~f 242 (851)
+.-+...|.|+++.-+. +.-|...... .| +.++-. .++....+-|.-|++..++..+.++|.|.+. |...|
T Consensus 4 ~~~~~~~~~~~~~~l~~-~~~W~~~~~~-~~---i~v~~r~~~~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~ 78 (215)
T cd08877 4 IRQEATIMQENLKDLDE-SDGWTLQKES-EG---IRVYYKFEPDGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFC 78 (215)
T ss_pred HHHHHHHHHHHHhcccC-CCCcEEeccC-CC---eEEEEEeCCCCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccc
Confidence 44456778888887765 5679886431 22 222211 1222246779999999999999999999864 55555
Q ss_pred CcceeeeeccCCCccHHHHHHHhhcccccccccceeeEE-eeccee-CCCcEEEEEeecCCCCC-----CCCCCCCC-Cc
Q 003069 243 RCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLL-RYSTSL-EDGSLVVCERSLTSSTG-----GPTGPPPS-SF 314 (851)
Q Consensus 243 ~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fL-Ryckq~-~~G~waVvDvSld~~~~-----~~~~~~~~-~~ 314 (851)
-..++|..+... -++.|..+-.|-| +..||+.+. +.+..+ ++|..+|+=.|++.... ....|+.. .+
T Consensus 79 ~~~~~l~~~~~~----~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~ 153 (215)
T cd08877 79 IRSKKVKQLGRA----DKVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKG 153 (215)
T ss_pred eeeEEEeecCCc----eEEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCc
Confidence 445566555432 1345555566777 888999985 556667 99999999999985321 11134455 88
Q ss_pred cceeecccceEEeecCCCceEEEEEEeeeccCCCccc
Q 003069 315 VRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPE 351 (851)
Q Consensus 315 ~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~ 351 (851)
+|.+...+|++|+++++|.|+|+++-|+|-.-+-||.
T Consensus 154 vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~ 190 (215)
T cd08877 154 VRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPK 190 (215)
T ss_pred eEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCH
Confidence 9999999999999999999999999997643333773
No 55
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.55 E-value=0.00046 Score=70.30 Aligned_cols=147 Identities=17% Similarity=0.211 Sum_probs=98.9
Q ss_pred eeeeeeeEEeeChhhHHHHhcCccchh---hcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeeccee-C
Q 003069 213 VAARACGLVSLDPTKIAEILKDCPSWF---RDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSL-E 288 (851)
Q Consensus 213 eASR~~glV~~~~~~LVe~lmD~~~W~---~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~-~ 288 (851)
-.-|.+++|..++.++.+++.|.+.+. ..|...++|+-+..+ . .++|..+..|=| |..|||.+.|..... +
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~---~-~i~~~~~~~p~p-vs~Rdfv~~~~~~~~~~ 115 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDN---E-RSVYTVIDLPWP-VKDRDMVLRSTTEQDAD 115 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCC---c-EEEEEEEecccc-cCCceEEEEEEEEEcCC
Confidence 455899999999999999999976654 445555666654332 1 224444444444 789999987654433 3
Q ss_pred CCcEEEEEeecCCCCCCCCCCCCCCccceeecccceEEeecCCCceEEEEEEeeeccCCCccccchhhhhchHHHHHHHH
Q 003069 289 DGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMT 368 (851)
Q Consensus 289 ~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w 368 (851)
+|..+|.=.|.+.. .|....++|.+.+.+|+.|++.++|.|+|+++-|++..-+...-+.+.+... +...+
T Consensus 116 ~~~~~i~~~s~~~~-----~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~iP~~lv~~~~~~----~~~~~ 186 (195)
T cd08876 116 DGSVTITLEAAPEA-----LPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSIPGWLANAFAKD----APYNT 186 (195)
T ss_pred CCEEEEEeecCCcc-----CCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCCCHHHHHHHHHH----HHHHH
Confidence 67777766666532 2233478899999999999999999999999999998754333333433322 34456
Q ss_pred HHHHH
Q 003069 369 MAAMR 373 (851)
Q Consensus 369 ~~aLr 373 (851)
+.+|+
T Consensus 187 l~~l~ 191 (195)
T cd08876 187 LENLR 191 (195)
T ss_pred HHHHH
Confidence 66664
No 56
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.53 E-value=5.8e-05 Score=59.10 Aligned_cols=34 Identities=35% Similarity=0.636 Sum_probs=28.7
Q ss_pred cCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHH
Q 003069 38 ECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCR 75 (851)
Q Consensus 38 ~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak 75 (851)
.+|||+..++.+|+++. |++.+||..||-|.|.|
T Consensus 7 ~nPYPs~~ek~~L~~~t----gls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQT----GLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHH----TS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHhHcc
Confidence 36999999999999999 99999999999999864
No 57
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.52 E-value=0.00025 Score=75.56 Aligned_cols=121 Identities=20% Similarity=0.218 Sum_probs=92.4
Q ss_pred eeeeeeEEeeChhhHHHHhcCcc---chhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeeccee-CC
Q 003069 214 AARACGLVSLDPTKIAEILKDCP---SWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSL-ED 289 (851)
Q Consensus 214 ASR~~glV~~~~~~LVe~lmD~~---~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~-~~ 289 (851)
+=|.-+.|...+.+|++.|.|.+ +|-..+...++|+.+.... .++|..+..|. -+.+|||-++|+.++. ++
T Consensus 78 ~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~----~iyy~~~p~Pw-Pvk~RDfV~~~s~~~~~~~ 152 (235)
T cd08873 78 SFCVELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDD----GIYHTTMPSLT-SEKPNDFVLLVSRRKPATD 152 (235)
T ss_pred EEEEEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCc----EEEEEEcCCCC-CCCCceEEEEEEEEeccCC
Confidence 34566668999999999999974 6777777888888776421 23443333333 4889999999999984 44
Q ss_pred -CcEEEEEeecCCCCCCCCCCCCCCccceeecccceEEeecCCCceEEEEEEeee
Q 003069 290 -GSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVD 343 (851)
Q Consensus 290 -G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e 343 (851)
+..+|.=.|+.. +..|+.+.|+|++.+=+|++|++.++|.|+||.+-|+|
T Consensus 153 ~~~~~I~~~SV~h----~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 153 GDPYKVAFRSVTL----PRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETN 203 (235)
T ss_pred CCeEEEEEeeeec----ccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcC
Confidence 337787777652 23556779999999999999999999999999999986
No 58
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=97.15 E-value=0.002 Score=68.77 Aligned_cols=132 Identities=21% Similarity=0.362 Sum_probs=100.5
Q ss_pred eeeeeeeEEeeChhhHHHHhcCc---cchhhcCCcceeeeeccCCCccHHHHHHHhhcccc-cccccceeeEEeecceeC
Q 003069 213 VAARACGLVSLDPTKIAEILKDC---PSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPT-TLAAARDFWLLRYSTSLE 288 (851)
Q Consensus 213 eASR~~glV~~~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~S-PLvp~Re~~fLRyckq~~ 288 (851)
-+=|.-..|...+..|.+.|.|. .+|...|...++|+-++.... +|...-.|- | +..|||-++|=..+..
T Consensus 78 l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~-----vY~~~~pPw~P-vk~RD~V~~~s~~~~~ 151 (236)
T cd08914 78 LSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQ-----IYHITCPIVNN-DKPKDLVVLVSRRKPL 151 (236)
T ss_pred EEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcC-----EEEEecCCCCC-CCCceEEEEEEEEecC
Confidence 35566678899999999999996 567778888889888775432 344332332 3 4899999987766555
Q ss_pred -CCc-EEEEEeecCCCCCCCCCCCCCCccceeecccceEEeecCCCceEEEEEEeeeccCCCccccchhh
Q 003069 289 -DGS-LVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPL 356 (851)
Q Consensus 289 -~G~-waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl 356 (851)
+|. ++|.=.|+.. +..|+...|+|.+.+=+|++|++.++|.|+||.+-|+| +..+|...-.+
T Consensus 152 ~dg~~~~I~~~SVp~----~~~Pp~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~d--Pg~lp~~~~n~ 215 (236)
T cd08914 152 KDGNTYVVAVKSVIL----PSVPPSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQIS--ASILPYFAGNL 215 (236)
T ss_pred CCCCEEEEEEeeccc----ccCCCCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcC--CccchheEEec
Confidence 886 8888888764 34566779999999999999999999999999999995 46666544443
No 59
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.06 E-value=0.0025 Score=66.45 Aligned_cols=148 Identities=20% Similarity=0.273 Sum_probs=106.5
Q ss_pred eeeeeeeEE-eeChhhHHHHhcCc---cchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeeccee-
Q 003069 213 VAARACGLV-SLDPTKIAEILKDC---PSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSL- 287 (851)
Q Consensus 213 eASR~~glV-~~~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~- 287 (851)
..=|+.+++ ...+..+++.|+|. .+|...+-..++|+....- +. .++|..+..|-|+ -.||+.+.|-..+.
T Consensus 45 ~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~--~~-~i~y~~~~~P~P~-s~RD~V~~r~~~~~~ 120 (207)
T cd08911 45 YEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPET--GS-EIIYWEMQWPKPF-ANRDYVYVRRYIIDE 120 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCC--CC-EEEEEEEECCCCC-CCccEEEEEEEEEcC
Confidence 356776655 78999999999997 5788888878888764331 22 4577788899886 99999998876665
Q ss_pred CCCcEEEEEeecCCCCCCCCCCCCCCccceeecccceEEeecC---CCceEEEEEEeeeccCC-CccccchhhhhchHHH
Q 003069 288 EDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCE---GGGSIIHIVDHVDLDAW-SVPEVLRPLYESSKIL 363 (851)
Q Consensus 288 ~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~---nG~skVtwVeH~e~d~~-~v~~l~rpl~~Sg~af 363 (851)
++|.++|+-.|++. +..|....++|.....||++|++.. +++|+|+++-|. |+. .+|. -+++.-..-
T Consensus 121 ~~~~~~i~~~sv~h----p~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~--dPgG~IP~---~lvN~~~~~ 191 (207)
T cd08911 121 ENKLIVIVSKAVQH----PSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD--NPGVNIPS---YITSWVAMS 191 (207)
T ss_pred CCCEEEEEEecCCC----CCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe--CCCCccCH---HHHHHHHHh
Confidence 45677888888874 2344556899999999999999994 678999988885 665 4763 233333333
Q ss_pred HHHHHHHHHH
Q 003069 364 AQKMTMAAMR 373 (851)
Q Consensus 364 gar~w~~aLr 373 (851)
+.-.|+.-|+
T Consensus 192 ~~~~~l~~l~ 201 (207)
T cd08911 192 GMPDFLERLR 201 (207)
T ss_pred hccHHHHHHH
Confidence 4445555553
No 60
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=97.04 E-value=0.0049 Score=66.12 Aligned_cols=124 Identities=22% Similarity=0.367 Sum_probs=93.8
Q ss_pred eeeeEEeeChhhHHHHhcCcc---chhhcCCcceeeeeccCCCccHHHHHHHhhcccc-c---ccccceeeEEeeccee-
Q 003069 216 RACGLVSLDPTKIAEILKDCP---SWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPT-T---LAAARDFWLLRYSTSL- 287 (851)
Q Consensus 216 R~~glV~~~~~~LVe~lmD~~---~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~S-P---Lvp~Re~~fLRyckq~- 287 (851)
|.-++|...+..|.+.|.|.+ +|-..|-..++|+.+..... + .++.+ | -+..|||-.++...+.
T Consensus 84 K~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~~-----v---Y~v~~~p~~~pvs~RDfV~~~s~~~~~ 155 (240)
T cd08913 84 KVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDDA-----I---YHVTSPSLSGHGKPQDFVILASRRKPC 155 (240)
T ss_pred EEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCcE-----E---EEEecCCCCCCCCCCeEEEEEEEEecc
Confidence 556799999999999999974 67777778888888775311 1 22322 2 5889999999888664
Q ss_pred CCC-cEEEEEeecCCCCCCCCCCCCCCccceeecccceEEeecCCCceEEEEEEeeeccCCCccccc
Q 003069 288 EDG-SLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVL 353 (851)
Q Consensus 288 ~~G-~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~ 353 (851)
++| .++|+=.|+.. |..|+...|+|.+.+..|++|++.++|.|+||++-|++ +..+|...
T Consensus 156 ~~g~~yii~~~sv~~----P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~d--PG~LP~~~ 216 (240)
T cd08913 156 DNGDPYVIALRSVTL----PTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQAT--PGVLPYIS 216 (240)
T ss_pred CCCccEEEEEEEeec----CCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeC--CccccHHH
Confidence 344 56676666653 33566779999999999999999999999999999998 34666443
No 61
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=96.96 E-value=0.001 Score=77.05 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=53.7
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 77 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~K 77 (851)
..||.|..||..|...|..+|+++++|+.+..+.|+.+| ||+..-|..||-|-|.|.+
T Consensus 419 ~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL----~L~~sTV~NfFmNaRRRsl 476 (558)
T KOG2252|consen 419 QTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQL----NLELSTVINFFMNARRRSL 476 (558)
T ss_pred cCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCcHHHHHHHHHhhhhhcc
Confidence 346778899999999999999999999999999999999 9999999999999887754
No 62
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=96.89 E-value=0.00098 Score=69.46 Aligned_cols=61 Identities=36% Similarity=0.646 Sum_probs=56.0
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003069 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (851)
Q Consensus 17 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~ 81 (851)
.++.++.++..|+..++..|...++|+...+.+|+..+ |++++.+++||||+|++.|+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~----~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 153 PRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEET----GLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred cCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhc----CCChhhhhhhcccHHHHHHhhcc
Confidence 35667789999999999999999999999999999999 99999999999999999998543
No 63
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=96.81 E-value=0.017 Score=51.54 Aligned_cols=107 Identities=19% Similarity=0.161 Sum_probs=78.5
Q ss_pred HHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeE
Q 003069 735 LKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC 813 (851)
Q Consensus 735 ~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 813 (851)
++.+.+ .|.+|+..+. +=.++|.|+++.++|+++-+++.+-+.---..+.++.+....+.+...++--..-.-++
T Consensus 3 ~~~i~~~~~~~i~~~d~----~g~I~~~N~a~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (113)
T PF00989_consen 3 YRAILENSPDGIFVIDE----DGRILYVNQAAEELLGYSREELIGKSLFDLIHPEDRRELRERLRQALSQGESGESFEVR 78 (113)
T ss_dssp HHHHHHCSSSEEEEEET----TSBEEEECHHHHHHHSS-HHHHTTSBGGGGCSGGGHHHHHHHHHHHHHHCCHECEEEEE
T ss_pred HHHHHhcCCceEEEEeC----cCeEEEECHHHHHHHccCHHHHcCCcHHHhcCchhhHHHHHHHHHHHHcCCCceeEEEE
Confidence 455554 7888887773 47899999999999999999999988877776766667777777777776655544455
Q ss_pred EcC-CCCeEEEcceEEeEeecCCCCeeEEEEeec
Q 003069 814 VSS-MGRAVSYEQAVAWKVLDDDDSNHCLAFMFM 846 (851)
Q Consensus 814 iss-~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~ 846 (851)
+.. .|+.++++ ..+=.+.|.+|+..|.-.+|.
T Consensus 79 ~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 111 (113)
T PF00989_consen 79 FRLRDGRPRWVE-VRASPVRDEDGQIIGILVIFR 111 (113)
T ss_dssp EEETTSCEEEEE-EEEEEEEETTEEEEEEEEEEE
T ss_pred EEecCCcEEEEE-EEEEEEEeCCCCEEEEEEEEE
Confidence 555 88888874 344455778888877776664
No 64
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=96.58 E-value=0.021 Score=50.73 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=81.1
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeEEcCCCC
Q 003069 740 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGR 819 (851)
Q Consensus 740 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Gr 819 (851)
+.|.+|+..+. |=.++|+|+++.++|+++-+++++.+...-..+..+++....+.++.+.|-.....-+... .|+
T Consensus 3 ~~p~~i~v~D~----~~~i~~~N~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 77 (110)
T PF08448_consen 3 SSPDGIFVIDP----DGRIVYANQAAAELFGVSPEELIGRSLFDLLPPEDREEFQAALRRALAGGEPVFFEEILLR-DGE 77 (110)
T ss_dssp HCSSEEEEEET----TSBEEEE-HHHHHHHTSTHHHHTTSBHHHHSCCGCHHHHHHHHHHHHHHTSEEEEEEEECT-TSC
T ss_pred CCCceeEEECC----CCEEEEEHHHHHHHhCCCHHHHhhccchhccccchhhhhHHHHHHhhccCceEEEEEEEee-cCC
Confidence 46777776643 5789999999999999999999999999877777999999999999999876554433333 666
Q ss_pred eEEEcceEEeEeecCCCCeeEEEEeecCcc
Q 003069 820 AVSYEQAVAWKVLDDDDSNHCLAFMFMNWS 849 (851)
Q Consensus 820 rf~i~~a~vW~l~D~~g~~~GqAa~F~~W~ 849 (851)
..++ +..+=-+.|++|...|..+++.+-+
T Consensus 78 ~~~~-~~~~~Pi~~~~g~~~g~~~~~~DiT 106 (110)
T PF08448_consen 78 ERWF-EVSISPIFDEDGEVVGVLVIIRDIT 106 (110)
T ss_dssp EEEE-EEEEEEEECTTTCEEEEEEEEEEEC
T ss_pred cEEE-EEEEEEeEcCCCCEEEEEEEEEECc
Confidence 6665 4466667799999999988876643
No 65
>PRK13557 histidine kinase; Provisional
Probab=96.24 E-value=0.035 Score=63.83 Aligned_cols=113 Identities=9% Similarity=-0.013 Sum_probs=79.5
Q ss_pred HHHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCC
Q 003069 732 DALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPG 810 (851)
Q Consensus 732 ~~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~ 810 (851)
...+..+.+ .+.+|+..+.. ..|-.+.|+|+++.++|+|+.+|+.+.+...-..+...++....+.++...|-.....
T Consensus 29 ~~~~~~~~~~~~~~i~v~d~~-~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (540)
T PRK13557 29 SDIFFAAVETTRMPMIVTDPN-QPDNPIVFANRAFLEMTGYAAEEIIGNNCRFLQGPETDRATVAEVRDAIAERREIATE 107 (540)
T ss_pred hHHHHHHHHhCcCcEEEEcCC-CCCCCEEEEcHHHHHHhCCCHHHhcCCChHhhcCCCCCHHHHHHHHHHHHcCCCceEE
Confidence 344555544 77787777653 2477899999999999999999999999876665544445455555555555433333
Q ss_pred eeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeec
Q 003069 811 GMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFM 846 (851)
Q Consensus 811 GvRiss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~ 846 (851)
-.+..+.|+.+++. ..+--+.|.+|...|...+..
T Consensus 108 ~~~~~~~G~~~~~~-~~~~~i~~~~g~~~~~~~~~~ 142 (540)
T PRK13557 108 ILNYRKDGSSFWNA-LFVSPVYNDAGDLVYFFGSQL 142 (540)
T ss_pred EEEEeCCCCEEEEE-EEEEEeECCCCCEEEEEEEec
Confidence 34567899999885 456668899999888766554
No 66
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=95.45 E-value=0.86 Score=47.95 Aligned_cols=174 Identities=16% Similarity=0.261 Sum_probs=102.5
Q ss_pred CCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHHHhh--hccccccccccc
Q 003069 416 LDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADYGVDA 493 (851)
Q Consensus 416 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~FLrd--~R~eWd~~~~~~ 493 (851)
..++|.... .++++.|..+++.+. .+. + .++..-+ |.+|+.||+||.+ +|.+||.. +.
T Consensus 20 ~~~gWk~~k--~~~~~~v~~k~~~~~--~gk-----------l--~k~egvi-~~~~e~v~~~l~~~e~r~~Wd~~-~~- 79 (204)
T cd08904 20 DTSGWKVVK--TSKKITVSWKPSRKY--HGN-----------L--YRVEGII-PESPAKLIQFMYQPEHRIKWDKS-LQ- 79 (204)
T ss_pred cccCCeEEe--cCCceEEEEEEcCCC--Cce-----------E--EEEEEEe-cCCHHHHHHHHhccchhhhhccc-cc-
Confidence 348998873 348899999887531 212 1 2344556 8999999999997 99999962 11
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCcceEecccccCCCCceEEEEEecCCCCCccccccccceEEEeeccCcCCCCCCceeE
Q 003069 494 YSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDVALARDMYLLQLCSGIDENTVGACAQ 573 (851)
Q Consensus 494 ~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~~~~De~~~Gs~s~ 573 (851)
+ .+.+-+| +...+|...+..+.. -.-+-+||.+.+|-.-..+ |. .+
T Consensus 80 -------~---------------~~iie~I----d~~T~I~~~~~~~~~---~~~vspRDfV~vr~~~r~~----~~-~~ 125 (204)
T cd08904 80 -------V---------------YKMLQRI----DSDTFICHTITQSFA---MGSISPRDFVDLVHIKRYE----GN-MN 125 (204)
T ss_pred -------c---------------eeeEEEe----CCCcEEEEEeccccc---CCcccCceEEEEEEEEEeC----CC-EE
Confidence 1 3344443 555577766654311 1125568888888742223 22 23
Q ss_pred EE-EeeccCC----CCCCC--CcccCceEEecCCcccccccCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCceE
Q 003069 574 LV-FAPIDES----FADDA--PLLASGFRVIPLDSKAAMQQDGPAASRTLDLASALEVGSGGARPAGGTELSNYNSRSVL 646 (851)
Q Consensus 574 vV-yAPvD~~----ds~~v--~LLPSGF~I~P~~~~~~~~~Dg~~~~~tldlas~le~~~~~~~~~~~~~~~~~~~gSlL 646 (851)
++ +.-|+-+ .+..| -..|+||.|.|+.. ..++|.|
T Consensus 126 ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~--------------------------------------~p~~t~l 167 (204)
T cd08904 126 IVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPE--------------------------------------NPAYSKL 167 (204)
T ss_pred EEEEEecccCCCCCCCCcEEEeeeccEEEEEECCC--------------------------------------CCCceEE
Confidence 33 3334332 24444 37899999999310 0246889
Q ss_pred EEEeeeccccc-ccchHHHHHhhhHhHHHHHHHHHHHHh
Q 003069 647 TIAFQFTFENH-MRDNVAAMARQYVRSVVGSVQRVAMAI 684 (851)
Q Consensus 647 TvaFQ~l~~~~-~~~sVa~~~~~~v~~v~~tvqri~~AL 684 (851)
|.-+|+=...- |..-|..+.. .++++.....+.||
T Consensus 168 ~~~~~~DlkG~lP~~vv~~~~~---~~~~~f~~~~~~~~ 203 (204)
T cd08904 168 VMFVQPELRGNLSRSVIEKTMP---TNLVNLILDAKDGI 203 (204)
T ss_pred EEEEEeCCCCCCCHHHHHHHhH---HHHHHHHHHHHHhc
Confidence 99999666653 4444443222 33455666665565
No 67
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=95.03 E-value=1.5 Score=46.03 Aligned_cols=65 Identities=23% Similarity=0.408 Sum_probs=44.3
Q ss_pred HHHhhhccCCCCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHHHhh--hc
Q 003069 406 RGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HR 483 (851)
Q Consensus 406 ~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~FLrd--~R 483 (851)
..|..-+ ...++|..... .++|+|..++.. + +.+...++...++.+||+.+|++|.| .|
T Consensus 13 ~~~~~~~--~~~~~W~~~~~--~~gi~iy~r~~~----~-----------~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r 73 (222)
T cd08871 13 EEFKKLC--DSTDGWKLKYN--KNNVKVWTKNPE----N-----------SSIKMIKVSAIFPDVPAETLYDVLHDPEYR 73 (222)
T ss_pred HHHHHHh--cCCCCcEEEEc--CCCeEEEEeeCC----C-----------CceEEEEEEEEeCCCCHHHHHHHHHChhhh
Confidence 3444333 23568997642 467999887764 2 12344455565657999999999998 89
Q ss_pred cccccc
Q 003069 484 SEWADY 489 (851)
Q Consensus 484 ~eWd~~ 489 (851)
.+||..
T Consensus 74 ~~Wd~~ 79 (222)
T cd08871 74 KTWDSN 79 (222)
T ss_pred hhhhhh
Confidence 999973
No 68
>PRK13559 hypothetical protein; Provisional
Probab=94.89 E-value=0.19 Score=55.40 Aligned_cols=114 Identities=12% Similarity=-0.017 Sum_probs=77.5
Q ss_pred HHHHHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCC
Q 003069 732 DALLKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPG 810 (851)
Q Consensus 732 ~~~~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~ 810 (851)
...++.++ +.+.+|+..+.. ..+-.+.|.|.++.++|+|+.+++.+.+.+.-..+....+....+..+.+.|-.....
T Consensus 42 ~~~~~~~~e~~~~~i~i~D~~-~~~g~i~~~N~a~~~l~G~~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 120 (361)
T PRK13559 42 GRLFEQAMEQTRMAMCITDPH-QPDLPIVLANQAFLDLTGYAAEEVVGRNCRFLQGAATDPIAVAKIRAAIAAEREIVVE 120 (361)
T ss_pred hhHHHHHHHhCCCcEEEecCC-CCCCcEEEEchHHHHHhCCCHHHHcCCChhhhcCCCCCHHHHHHHHHHhccCCceEEE
Confidence 44455555 478888888764 2366899999999999999999999988765444444444455556666666544444
Q ss_pred eeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 811 GMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 811 GvRiss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
-.+..+.|+.|+++- .+=-+.|++|.+.|...++.+
T Consensus 121 ~~~~~~dG~~~~~~~-~~~~i~d~~G~~~~~v~~~~D 156 (361)
T PRK13559 121 LLNYRKDGEPFWNAL-HLGPVYGEDGRLLYFFGSQWD 156 (361)
T ss_pred EEEEcCCCCEEEEEE-EEEEEEcCCCCEEEeeeeeee
Confidence 455678898887743 222356888888776666544
No 69
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=94.76 E-value=0.022 Score=71.97 Aligned_cols=62 Identities=21% Similarity=0.336 Sum_probs=57.0
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHH
Q 003069 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 82 (851)
Q Consensus 17 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~~ 82 (851)
++++|++++..|+..+...|....+|...+.+.|...+ +++++.|.+||||-|.|.|+.+++
T Consensus 903 r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~----~~~~~~i~vw~qna~~~s~k~~~n 964 (1406)
T KOG1146|consen 903 RRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPI----GLPKRVIQVWFQNARAKSKKAKLN 964 (1406)
T ss_pred hhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccc----cCCcchhHHhhhhhhhhhhhhhhc
Confidence 35678899999999999999999999999999999999 999999999999999999986654
No 70
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=94.46 E-value=3.8 Score=42.56 Aligned_cols=57 Identities=21% Similarity=0.391 Sum_probs=42.6
Q ss_pred CCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHHHhhhccccccc
Q 003069 416 LDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADY 489 (851)
Q Consensus 416 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~FLrd~R~eWd~~ 489 (851)
..++|.... ..++|+|.+++.. ++. .+..-++.+-+ +.+|+.||+.|.|.|.+||..
T Consensus 17 ~~~~W~~~~--~~~gi~I~~k~~~----~~~----------~l~~~K~~~~v-~a~~~~v~~~l~d~r~~Wd~~ 73 (197)
T cd08869 17 KSKGWVSVS--SSDHVELAFKKVD----DGH----------PLRLWRASTEV-EAPPEEVLQRILRERHLWDDD 73 (197)
T ss_pred ccCCceEEe--cCCcEEEEEEeCC----CCC----------cEEEEEEEEEe-CCCHHHHHHHHHHHHhccchh
Confidence 468998654 3569999998874 211 13344777888 799999999999999999963
No 71
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=94.43 E-value=3.9 Score=43.21 Aligned_cols=58 Identities=22% Similarity=0.375 Sum_probs=43.2
Q ss_pred CCCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHHHhhhccccccc
Q 003069 415 FLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADY 489 (851)
Q Consensus 415 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~FLrd~R~eWd~~ 489 (851)
-...||.... ..++|.|.+++..+ | . |...+.|. +=++.+|.+.|+|.|+| |..||..
T Consensus 24 ek~kgW~~~~--~~~~vev~~kk~~d---~-~-------~l~lwk~s---~ei~~~p~~vl~rvL~d-R~~WD~~ 81 (205)
T cd08907 24 ERFKGWHSAP--GPDNTELACKKVGD---G-H-------PLRLWKVS---TEVEAPPSVVLQRVLRE-RHLWDED 81 (205)
T ss_pred hccCCceeec--CCCCcEEEEEeCCC---C-C-------ceEEEEEE---EEecCCCHHHHHHHhhc-hhhhhHH
Confidence 5567998764 35789999998753 3 2 33445444 55678999999999999 9999973
No 72
>TIGR00229 sensory_box PAS domain S-box. The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator.
Probab=94.37 E-value=0.76 Score=37.79 Aligned_cols=107 Identities=11% Similarity=0.126 Sum_probs=65.3
Q ss_pred HHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeE
Q 003069 735 LKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC 813 (851)
Q Consensus 735 ~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 813 (851)
++.++. .|.+++..+. +-.+.|.|.++.++|+++..++.+.+......+.........+.++.+.+......-++
T Consensus 5 ~~~~~~~~~~~~~~~d~----~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (124)
T TIGR00229 5 YRAIFESSPDAIIVIDL----EGNILYVNPAFEEIFGYSAEELIGRNVLELIPEEDREEVRERIERLLEGEREPVSEERR 80 (124)
T ss_pred HHHHHhhCCceEEEEcC----CCcEEEEchHHHHHhCCChHHhcCcchhhhcChhhhHHHHHHHHHHHcCCCCCcceEee
Confidence 455554 5556666544 46799999999999999999998877766555555454455556665533222222334
Q ss_pred E-cCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 814 V-SSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 814 i-ss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
+ ...|+.+++.- .+-.+. ++|...|...++.+
T Consensus 81 ~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~d 113 (124)
T TIGR00229 81 VRRKDGSEIWVEV-SVSPIR-TNGGELGVVGIVRD 113 (124)
T ss_pred eEcCCCCEEEEEE-EEeehh-hCCCeeEEEEEeee
Confidence 3 56676665532 222233 56777776665543
No 73
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=94.18 E-value=0.17 Score=48.57 Aligned_cols=94 Identities=13% Similarity=0.179 Sum_probs=57.2
Q ss_pred CCcccCCHHHHHH-HHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHHHHHHhhhhHHHHhhH
Q 003069 19 TKYVRYTPEQVEA-LERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNK 97 (851)
Q Consensus 19 rkr~r~T~~Ql~~-LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~~~~l~~~n~kl~~en~ 97 (851)
+++.+||.++... +...+... ....++|+++ |+++.++..|.+- .+....................
T Consensus 8 ~~rr~ys~EfK~~aV~~~~~~g-----~sv~evA~e~----gIs~~tl~~W~r~----y~~~~~~~~~~~~~~~~~~~~~ 74 (121)
T PRK09413 8 EKRRRRTTQEKIAIVQQSFEPG-----MTVSLVARQH----GVAASQLFLWRKQ----YQEGSLTAVAAGEQVVPASELA 74 (121)
T ss_pred CCCCCCCHHHHHHHHHHHHcCC-----CCHHHHHHHH----CcCHHHHHHHHHH----HhhcccccccccccCCchhHHH
Confidence 4456788887554 44444432 2466789999 9999999999543 2211110000000111112233
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 98 LLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 98 ~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
.+.+++.+|++++.+|+.||.-||+-..
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788899999999999999998763
No 74
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=93.53 E-value=0.49 Score=58.21 Aligned_cols=109 Identities=13% Similarity=0.065 Sum_probs=80.3
Q ss_pred HHHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCee
Q 003069 734 LLKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGM 812 (851)
Q Consensus 734 ~~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 812 (851)
.++.++ +.|.+|+..+.. =.++|.|+++.++|+++.+++.+.+..--..+.....-.....++.++|-...+.-.
T Consensus 156 ~l~~il~~~~~~i~~~D~~----g~i~~~N~a~~~l~G~~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 231 (779)
T PRK11091 156 LLRSFLDASPDLVYYRNED----GEFSGCNRAMELLTGKSEKQLIGLTPKDVYSPEAAEKVIETDEKVFRHNVSLTYEQW 231 (779)
T ss_pred HHHHHHhcCcceEEEECCC----CcEEeEcHHHHHHhCcCHHHHcCCChHHhCCHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 344554 478888877654 689999999999999999999998766555554444445555667777766666555
Q ss_pred EEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 813 CVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 813 Riss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
...+.|+.++++ ..+..+.|++|...|..+++.+
T Consensus 232 ~~~~~G~~~~~~-~~~~pi~~~~g~~~g~v~~~~D 265 (779)
T PRK11091 232 LDYPDGRKACFE-LRKVPFYDRVGKRHGLMGFGRD 265 (779)
T ss_pred EEcCCCCEEEEE-EEeeeEEcCCCCEEEEEEEEee
Confidence 667789888874 4566778999999998877754
No 75
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=93.48 E-value=0.057 Score=45.46 Aligned_cols=42 Identities=19% Similarity=0.397 Sum_probs=31.3
Q ss_pred HHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhh
Q 003069 28 QVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRR 73 (851)
Q Consensus 28 Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRR 73 (851)
-++.|+++|...+++....-..|..+. +|+..||+.||--|+
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS----~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKS----RMSYQQVRDWFAERM 50 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHT----T--HHHHHHHHHHHS
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHH----CCCHHHHHHHHHHhc
Confidence 356799999999999999999999999 999999999997554
No 76
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=93.25 E-value=0.041 Score=61.55 Aligned_cols=57 Identities=25% Similarity=0.292 Sum_probs=49.0
Q ss_pred CCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003069 18 STKYVRYTPEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (851)
Q Consensus 18 ~rkr~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kk 78 (851)
.|++..+......+|+.+..+ .|||+...+..|++++ ||+..||..||-|.|-|..+
T Consensus 240 ~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~T----GLs~~Qv~NWFINaR~R~w~ 299 (342)
T KOG0773|consen 240 WRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQT----GLSRPQVSNWFINARVRLWK 299 (342)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhc----CCCcccCCchhhhcccccCC
Confidence 455567999999999988555 4899999999999999 99999999999999976665
No 77
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=92.53 E-value=2.2 Score=32.96 Aligned_cols=99 Identities=14% Similarity=0.089 Sum_probs=56.1
Q ss_pred CCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeEEcCCCCeE
Q 003069 742 SDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRAV 821 (851)
Q Consensus 742 ~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf 821 (851)
|.+++..+. +-.+.|.|.++.++|+++..++.+.+...-..+..+......+.++.+.+-...+.=.-....|...
T Consensus 2 ~~~i~~~d~----~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (103)
T cd00130 2 PDGVIVLDL----DGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRERLENLLSGGEPVTLEVRLRRKDGSVI 77 (103)
T ss_pred CceEEEECC----CCcEEEECHHHHHHhCCCHHHHcCccHHHhcCCccchHHHHHHHHHHhcCcCeEEEEEEEccCCCEE
Confidence 344444443 3568899999999999999999887765555555544445555555543222211111223335555
Q ss_pred EEcceEEeEeecCCCCeeEEEEee
Q 003069 822 SYEQAVAWKVLDDDDSNHCLAFMF 845 (851)
Q Consensus 822 ~i~~a~vW~l~D~~g~~~GqAa~F 845 (851)
++. ..+-.+.+.+|...+...++
T Consensus 78 ~~~-~~~~~~~~~~~~~~~~~~~~ 100 (103)
T cd00130 78 WVL-VSLTPIRDEGGEVIGLLGVV 100 (103)
T ss_pred EEE-EEEEEEecCCCCEEEEEEEE
Confidence 543 23333455666666655544
No 78
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=92.38 E-value=0.53 Score=53.14 Aligned_cols=110 Identities=13% Similarity=0.003 Sum_probs=69.4
Q ss_pred HHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCe
Q 003069 733 ALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGG 811 (851)
Q Consensus 733 ~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 811 (851)
+.++.+.. .|.+|+..+.+ ..+.|.|.++.++|+++-+++++.+...-..+....+....+.+....|-.....-
T Consensus 4 ~~~~~i~~~~~~~i~~~d~~----g~~~~~N~~~~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (494)
T TIGR02938 4 EAYRQTVDQAPLAISITDLK----ANILYANDAFTRITGYTKEEIIGKNESVLSNHTTPPEVYQALWGSLAEQKPWAGKL 79 (494)
T ss_pred HHHHHHHHhCCceEEEECCC----CcEEEEchhheeecCCCHHHHhCCCchhhcCCCCCHHHHHHHHHHHHhCCccccee
Confidence 34555554 67777776654 78999999999999999999998764433333222222223333333332222333
Q ss_pred eEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 812 MCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 812 vRiss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
.+..+.|+.++.+ ..+-.+.|++|...|.-.++.+
T Consensus 80 ~~~~~~g~~~~~~-~~~~~~~~~~g~~~~~~~~~~D 114 (494)
T TIGR02938 80 LNRRKDGELYLAE-LTVAPVLNEAGETTHFLGMHRD 114 (494)
T ss_pred eccCCCccchhhh-eeeEEEECCCCCEEEEEEehhh
Confidence 4566789888864 3445677889998877666543
No 79
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=90.77 E-value=16 Score=37.06 Aligned_cols=60 Identities=17% Similarity=0.285 Sum_probs=43.3
Q ss_pred ccC-CCCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHHHhh--hcccccc
Q 003069 412 ING-FLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWAD 488 (851)
Q Consensus 412 v~~-s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~FLrd--~R~eWd~ 488 (851)
.++ |++-+|..... .++|+|..++.. + . .+..-+++..+ +.||+.+++++.| +|.+||.
T Consensus 10 ~~~~~~~~~W~~~~~--~~~v~v~~~~~~----~-~----------~~~~~k~~~~i-~~s~e~v~~vi~d~e~~~~w~~ 71 (195)
T cd08876 10 GAALAPDGDWQLVKD--KDGIKVYTRDVE----G-S----------PLKEFKAVAEV-DASIEAFLALLRDTESYPQWMP 71 (195)
T ss_pred ccccCCCCCCEEEec--CCCeEEEEEECC----C-C----------CeEEEEEEEEE-eCCHHHHHHHHhhhHhHHHHHh
Confidence 344 44555987753 479999988763 1 1 23445666778 7999999999998 8999997
Q ss_pred c
Q 003069 489 Y 489 (851)
Q Consensus 489 ~ 489 (851)
.
T Consensus 72 ~ 72 (195)
T cd08876 72 N 72 (195)
T ss_pred h
Confidence 3
No 80
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=90.60 E-value=12 Score=39.24 Aligned_cols=66 Identities=21% Similarity=0.428 Sum_probs=51.5
Q ss_pred HHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHHHhh--
Q 003069 404 LSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE-- 481 (851)
Q Consensus 404 M~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~FLrd-- 481 (851)
++..|...+.. .++|.... ..++|+|..|...+ +.+++-++-..+ +.|+..+++.|+|
T Consensus 10 ~~~~~~~~l~~--~~~W~~~~--~~~~i~v~~r~~~~---------------~~~~~~k~e~~i-~~~~~~~~~vl~d~~ 69 (215)
T cd08877 10 IMQENLKDLDE--SDGWTLQK--ESEGIRVYYKFEPD---------------GSLLSLRMEGEI-DGPLFNLLALLNEVE 69 (215)
T ss_pred HHHHHHhcccC--CCCcEEec--cCCCeEEEEEeCCC---------------CCEEEEEEEEEe-cCChhHeEEEEehhh
Confidence 34556666655 77899874 34799999988642 237889999999 7899999999998
Q ss_pred hccccccc
Q 003069 482 HRSEWADY 489 (851)
Q Consensus 482 ~R~eWd~~ 489 (851)
.+.+|+.+
T Consensus 70 ~~~~W~p~ 77 (215)
T cd08877 70 LYKTWVPF 77 (215)
T ss_pred hHhhhccc
Confidence 89999974
No 81
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=90.56 E-value=0.35 Score=50.99 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=80.3
Q ss_pred cchhhcCC--cceeeeeccCCCccHHHHHHHhhcccccccccceeeEEee-cceeCC-CcEEEEEeecCCCCCCCCCC-C
Q 003069 236 PSWFRDCR--CLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRY-STSLED-GSLVVCERSLTSSTGGPTGP-P 310 (851)
Q Consensus 236 ~~W~~~f~--~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRy-ckq~~~-G~waVvDvSld~~~~~~~~~-~ 310 (851)
.+|...+- .+++++....+.++..++.|.+..+|-| +..|||..+.. +...+. ..++|+..+++.. ..| .
T Consensus 66 ~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~----~~p~~ 140 (208)
T cd08864 66 KEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYKFPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPP----LVESL 140 (208)
T ss_pred hhchhhhccceeEEeeecCCCccceEEEEEEEEECCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCC----cCCcc
Confidence 47777777 6888888776655555667777788888 89999999999 666652 5779999998743 222 3
Q ss_pred CCCccceeecccceEEeecCC---CceEEEEEEeeeccCC-Ccc
Q 003069 311 PSSFVRAEMLASGFLIRPCEG---GGSIIHIVDHVDLDAW-SVP 350 (851)
Q Consensus 311 ~~~~~r~rrlPSGclIq~~~n---G~skVtwVeH~e~d~~-~v~ 350 (851)
...++|.+ -=||..|+..+. +-..|+|+==...|+. .||
T Consensus 141 ~~~~Vr~~-y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP 183 (208)
T cd08864 141 YENAVLGR-YASVEKISYLPDADGKSNKVEWIMATRSDAGGNIP 183 (208)
T ss_pred CCCcEEEE-EEEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCc
Confidence 35789988 679999998875 4789999983344554 466
No 82
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=90.45 E-value=2 Score=49.24 Aligned_cols=84 Identities=14% Similarity=0.134 Sum_probs=62.6
Q ss_pred HHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCee
Q 003069 734 LLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGM 812 (851)
Q Consensus 734 ~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 812 (851)
.++.++. .|++|+..+.. +-.+.|.|.++.+||+|+.+++++.+...-..+..+......+.+...+|....+ =+
T Consensus 134 r~~~l~e~~~~~i~~~d~~---~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~-~~ 209 (442)
T TIGR02040 134 RYRVVLEVSSDAVLLVDMS---TGRIVEANSAAAALLGGVGQSLVGRAFPQEFEGRRREELMLTLRNVRATGSAAPV-RI 209 (442)
T ss_pred HHHHHHhhCCceEEEEECC---CCEEEEEcHHHHHHhCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCCcce-EE
Confidence 4555554 67888877664 5689999999999999999999998877666777788788888888888875433 24
Q ss_pred EEcCCCCeE
Q 003069 813 CVSSMGRAV 821 (851)
Q Consensus 813 Riss~Grrf 821 (851)
+....|.++
T Consensus 210 ~~~~~~~~~ 218 (442)
T TIGR02040 210 LLRRSQKRL 218 (442)
T ss_pred EEcCCCeEE
Confidence 444455444
No 83
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=90.22 E-value=20 Score=35.55 Aligned_cols=126 Identities=18% Similarity=0.289 Sum_probs=72.3
Q ss_pred CCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHHHhh--hccccccccccchh
Q 003069 418 DGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADYGVDAYS 495 (851)
Q Consensus 418 ~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~FLrd--~R~eWd~~~~~~~s 495 (851)
++|..+... ++|+|..++..+ . .+...++..-+ +.|+..|+++|.| .|.+||.. +.
T Consensus 15 ~~W~~~~~~--~~v~vy~~~~~~-----~----------~~~~~k~~~~i-~~~~~~v~~~l~d~~~~~~w~~~----~~ 72 (193)
T cd00177 15 EGWKLVKEK--DGVKIYTKPYED-----S----------GLKLLKAEGVI-PASPEQVFELLMDIDLRKKWDKN----FE 72 (193)
T ss_pred CCeEEEEEC--CcEEEEEecCCC-----C----------CceeEEEEEEE-CCCHHHHHHHHhCCchhhchhhc----ce
Confidence 589987533 488988777642 1 12344556667 6899999999996 89999963 11
Q ss_pred hhhhccCCCCCCCCCCCCCCCcceEecccccCCCCceEEEEEecCCCCCccccccccceEEEeeccCcCCCCCCceeEEE
Q 003069 496 AACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDVALARDMYLLQLCSGIDENTVGACAQLV 575 (851)
Q Consensus 496 ~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~~~~De~~~Gs~s~vV 575 (851)
...++..+.. +..|--.+....-+ +-.|+++++..+ ..++ .|. -+++
T Consensus 73 --------------------~~~vl~~~~~----~~~i~~~~~~~p~p-----~~~Rdfv~~~~~-~~~~--~~~-~~~~ 119 (193)
T cd00177 73 --------------------EFEVIEEIDE----HTDIIYYKTKPPWP-----VSPRDFVYLRRR-RKLD--DGT-YVIV 119 (193)
T ss_pred --------------------EEEEEEEeCC----CeEEEEEEeeCCCc-----cCCccEEEEEEE-EEcC--CCe-EEEE
Confidence 0223333321 12333333333211 456889998875 3453 342 4667
Q ss_pred EeeccCCC-C---CC--CCcccCceEEec
Q 003069 576 FAPIDESF-A---DD--APLLASGFRVIP 598 (851)
Q Consensus 576 yAPvD~~d-s---~~--v~LLPSGF~I~P 598 (851)
..+||... | +. ..++++||.|-|
T Consensus 120 ~~Si~~~~~p~~~~~vR~~~~~~~~~i~~ 148 (193)
T cd00177 120 SKSVDHDSHPKEKGYVRAEIKLSGWIIEP 148 (193)
T ss_pred EeecCCCCCCCCCCcEEEEEEccEEEEEE
Confidence 77776641 1 22 224466666666
No 84
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=89.90 E-value=26 Score=36.48 Aligned_cols=56 Identities=25% Similarity=0.393 Sum_probs=38.6
Q ss_pred CCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHHHh-h--hccccccc
Q 003069 416 LDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLR-E--HRSEWADY 489 (851)
Q Consensus 416 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~FLr-d--~R~eWd~~ 489 (851)
...+|.... +..++|.|.++... + . +-+ .++...+ ++||..||++|- | .|.+||..
T Consensus 22 ~~~~W~l~~-~~~~~i~i~~r~~~----~-~---------~~~--~k~~~~i-~~~~~~v~~~l~~d~~~~~~Wd~~ 80 (208)
T cd08868 22 TDPGWKLEK-NTTWGDVVYSRNVP----G-V---------GKV--FRLTGVL-DCPAEFLYNELVLNVESLPSWNPT 80 (208)
T ss_pred cCCCceEEE-ecCCCCEEEEEEcC----C-C---------ceE--EEEEEEE-cCCHHHHHHHHHcCccccceecCc
Confidence 345998764 33348999998864 2 1 223 4445567 899999998765 4 89999973
No 85
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=89.89 E-value=1.3 Score=37.77 Aligned_cols=45 Identities=27% Similarity=0.412 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 003069 73 RCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYEN 117 (851)
Q Consensus 73 Rak~Kkrq~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN 117 (851)
+++.|++..-..++.....|..+|..|++++..+..+.+.|..+|
T Consensus 19 ~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 19 RSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 666777777777777777777777777777777777777666665
No 86
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=89.89 E-value=6.6 Score=38.56 Aligned_cols=85 Identities=22% Similarity=0.261 Sum_probs=46.2
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHHHHHHhhhhHHHHhhHHHH
Q 003069 21 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLM 100 (851)
Q Consensus 21 r~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~~~~l~~~n~kl~~en~~l~ 100 (851)
-.+||.+++..+ .-.+|-++| -|++...|--|=|-||+-.-+- -...|+. |--.....|.
T Consensus 21 ~d~lsDd~Lvsm-------------SVReLNr~L---rG~~reEVvrlKQrRRTLKNRG-YA~sCR~---KRv~Qk~eLE 80 (135)
T KOG4196|consen 21 GDRLSDDELVSM-------------SVRELNRHL---RGLSREEVVRLKQRRRTLKNRG-YAQSCRV---KRVQQKHELE 80 (135)
T ss_pred CCCcCHHHHHHh-------------hHHHHHHHh---cCCCHHHHHHHHHHHHHHhhhh-HHHHHHH---HHHHHHHHHH
Confidence 367888887766 234455555 2999999999999888643321 1111111 0011123334
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 101 EENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 101 ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
.++..+..|+++|+.||.+++.|++
T Consensus 81 ~~k~~L~qqv~~L~~e~s~~~~E~d 105 (135)
T KOG4196|consen 81 KEKAELQQQVEKLKEENSRLRRELD 105 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555554
No 87
>PRK13558 bacterio-opsin activator; Provisional
Probab=89.76 E-value=2.5 Score=51.16 Aligned_cols=106 Identities=8% Similarity=-0.076 Sum_probs=75.4
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeEEcCCCC
Q 003069 740 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGR 819 (851)
Q Consensus 740 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Gr 819 (851)
+.|..|...+.. ..+..+.|.|.+..++|+++-+++.+.+...-..+..+.++...+.+..+.|-.....-....+.|.
T Consensus 156 ~~~~gi~~~d~~-~~dg~i~~~N~~~~~l~G~~~eel~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~ 234 (665)
T PRK13558 156 EAPVGITIADAT-LPDEPLIYINDAFERITGYSPDEVLGRNCRFLQGEDTNEERVAELREAIDEERPTSVELRNYRKDGS 234 (665)
T ss_pred cCCccEEEEcCC-CCCCcEEEEcHHHHHHhCcCHHHHcCCCHHHhcCCCccHHHHHHHHHHHhcCCCeEEEEEEECCCCC
Confidence 467777776643 2578899999999999999999999988776666665666666666666666443333334568888
Q ss_pred eEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 820 AVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 820 rf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
.++++- .+=.+.|++|...|...++.+
T Consensus 235 ~~~~~~-~~~pi~d~~G~~~~~vgi~~D 261 (665)
T PRK13558 235 TFWNQV-DIAPIRDEDGTVTHYVGFQTD 261 (665)
T ss_pred EEEEEE-EEEEEECCCCCEEEEEEEEEe
Confidence 887642 333567889998887776654
No 88
>PRK13560 hypothetical protein; Provisional
Probab=89.56 E-value=2.2 Score=51.92 Aligned_cols=109 Identities=10% Similarity=-0.043 Sum_probs=70.8
Q ss_pred HHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeE
Q 003069 735 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC 813 (851)
Q Consensus 735 ~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 813 (851)
++.++ +.|.+|+..+. |=.++|.|+++.++|+|+-+|+.+.+..--..+...+..+.........|-...+.-..
T Consensus 206 l~~l~e~~~~~i~~~d~----~g~i~~~N~~~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 281 (807)
T PRK13560 206 LQQLLDNIADPAFWKDE----DAKVFGCNDAACLACGFRREEIIGMSIHDFAPAQPADDYQEADAAKFDADGSQIIEAEF 281 (807)
T ss_pred HHHHHhhCCCeEEEEcC----CCCEEEEhHHHHHHhCCCHHHHcCCcchhcCCcchhHHHHHHHHHHhccCCceEEEEEE
Confidence 44444 36777776654 46899999999999999999999988766554443344434444444444333444556
Q ss_pred EcCCCCeEEEcce-EEeEeecCCCCeeEEEEeecC
Q 003069 814 VSSMGRAVSYEQA-VAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 814 iss~Grrf~i~~a-~vW~l~D~~g~~~GqAa~F~~ 847 (851)
..+.|+.++++-. ..-.+.|++|...|...++.+
T Consensus 282 ~~~dG~~~~~~~~~~~~~~~~~~g~~~g~~~~~~D 316 (807)
T PRK13560 282 QNKDGRTRPVDVIFNHAEFDDKENHCAGLVGAITD 316 (807)
T ss_pred EcCCCCEEEEEEEecceEEEcCCCCEEEEEEEEEe
Confidence 6788988865321 122345888888887766643
No 89
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=89.05 E-value=2.2 Score=49.01 Aligned_cols=95 Identities=22% Similarity=0.285 Sum_probs=68.6
Q ss_pred HHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccC-HHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCee
Q 003069 735 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETT-LVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGM 812 (851)
Q Consensus 735 ~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~-w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 812 (851)
++.++ ..|++|+..+.+ =.++|+|.++.+||+|+ -+++++.+...-.. ....+...++..+.+.|....|...
T Consensus 254 ~~~l~e~~~d~I~v~D~~----G~I~~~N~a~~~l~G~~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~ 328 (442)
T TIGR02040 254 LARLYHEAPDAIVFSDAD----GTIRGANEAFLELTDSSSLEAVRGRTLDRWLG-RGGVDLRVLLSNVRRTGQVRLYATT 328 (442)
T ss_pred HHHHHHhCCceEEEEcCC----CcEEehhHHHHHHhCCCChHHHcCCCHHHHhC-CCcccHHHHHHHHhhcCceEEEEEE
Confidence 44444 488898887765 47899999999999997 57899987542221 2233457778888889988888877
Q ss_pred EEcCCCCeEEEcceEEeEeecCCC
Q 003069 813 CVSSMGRAVSYEQAVAWKVLDDDD 836 (851)
Q Consensus 813 Riss~Grrf~i~~a~vW~l~D~~g 836 (851)
-..+.|+.++++ +-...+.+++
T Consensus 329 ~~~~~G~~~~ve--~s~~~i~~~~ 350 (442)
T TIGR02040 329 LTGEFGAQTEVE--ISAAWVDQGE 350 (442)
T ss_pred EEcCCCCEEEEE--EEEEEeccCC
Confidence 789999999996 3334444433
No 90
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=87.99 E-value=3.3 Score=43.61 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=39.3
Q ss_pred CCCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHHHhh--hcccccc
Q 003069 415 FLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWAD 488 (851)
Q Consensus 415 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~FLrd--~R~eWd~ 488 (851)
-..++|. +. ...++|+|.++... + . .-++++. +-+ ++||+.|+++|.| .|.+||.
T Consensus 19 ~~~~gW~-l~-~~~~gI~Vy~k~~~----~-~--------~~~~~ge---~~v-~as~~~v~~ll~D~~~r~~Wd~ 75 (205)
T cd08874 19 QATAGWS-YQ-CLEKDVVIYYKVFN----G-T--------YHGFLGA---GVI-KAPLATVWKAVKDPRTRFLYDT 75 (205)
T ss_pred hccCCcE-EE-ecCCCEEEEEecCC----C-C--------cceEEEE---EEE-cCCHHHHHHHHhCcchhhhhHH
Confidence 4677994 43 33589999987643 2 2 1245543 245 8999999999998 8999997
No 91
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=87.20 E-value=1.1 Score=47.55 Aligned_cols=111 Identities=24% Similarity=0.379 Sum_probs=83.9
Q ss_pred eeChhhHHHHhcCc---cchhhcCCcceeeeecc-CCCccHHHHHHHhhcccccccccceeeEEeecceeCCCcEEEEEe
Q 003069 222 SLDPTKIAEILKDC---PSWFRDCRCLDVLSVIP-TGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCER 297 (851)
Q Consensus 222 ~~~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~-~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVvDv 297 (851)
.+.|..+-++|+|. .+|=.+--.+++|+..+ +| + +++|-+++.|.|+- .||+-++|---..++-.-+||-.
T Consensus 63 Dvtp~~~~Dv~~D~eYRkkWD~~vi~~e~ie~d~~tg---~-~vv~w~~kfP~p~~-~RdYV~~Rr~~~~~~k~~~i~s~ 137 (219)
T KOG2761|consen 63 DVTPEIVRDVQWDDEYRKKWDDMVIELETIEEDPVTG---T-EVVYWVKKFPFPMS-NRDYVYVRRWWESDEKDYYIVSK 137 (219)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhhhheeeeecCCCC---c-eEEEEEEeCCcccC-CccEEEEEEEEecCCceEEEEEe
Confidence 45788999999995 68888888889998877 43 2 56778888998875 59999998877777777788888
Q ss_pred ecCCCCCCCCCCCCCCccceeecccceEEe-----ecCCC-ceEEEEEEe
Q 003069 298 SLTSSTGGPTGPPPSSFVRAEMLASGFLIR-----PCEGG-GSIIHIVDH 341 (851)
Q Consensus 298 Sld~~~~~~~~~~~~~~~r~rrlPSGclIq-----~~~nG-~skVtwVeH 341 (851)
|+.. +..|+...++|..-.=||.+|| +=++| .|.++|++|
T Consensus 138 ~v~h----~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~ 183 (219)
T KOG2761|consen 138 SVQH----PSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHN 183 (219)
T ss_pred cccC----CCcCCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEEC
Confidence 7763 4455556678999999999999 44554 345555554
No 92
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=86.83 E-value=46 Score=35.29 Aligned_cols=54 Identities=22% Similarity=0.471 Sum_probs=34.7
Q ss_pred CCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHHHhhhcccccc
Q 003069 418 DGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLREHRSEWAD 488 (851)
Q Consensus 418 ~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~FLrd~R~eWd~ 488 (851)
.+|..+.+ .+++.+..+|..+ + . | +=--++++=+ +.||..|+..+-+.|.+||.
T Consensus 27 k~w~~~~~--~~~~e~~ykK~~d---~-~-------~---lk~~r~~~ei-~~~p~~VL~~vl~~R~~WD~ 80 (205)
T cd08909 27 KGWISCSS--SDNTELAYKKVGD---G-N-------P---LRLWKVSVEV-EAPPSVVLNRVLRERHLWDE 80 (205)
T ss_pred cCCcccCC--cCCeEEEEecCCC---C-C-------c---eEEEEEEEEe-CCCHHHHHHHHHhhHhhHHh
Confidence 47777743 4788888888642 2 2 1 2233457778 66666665555447999996
No 93
>PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A.
Probab=86.18 E-value=0.91 Score=37.62 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=30.1
Q ss_pred HHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccc
Q 003069 734 LLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIML 781 (851)
Q Consensus 734 ~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lps 781 (851)
.++.+++ .|.+|+..+ . . +++|+|+++.+||+++ ..+.+.
T Consensus 2 ~~~~l~~~~~~~i~i~d-~--~--~i~~~N~~~~~l~g~~---~~~~~~ 42 (64)
T PF13188_consen 2 RYRSLFDNSPDGILIID-G--G--RIIYVNPAFEELFGYS---LEGEDI 42 (64)
T ss_dssp HHHHHHCCSSSEEEEEE-T--S--BEEEE-HHHHHHHCS----HTCCCH
T ss_pred HHHHHHHcCccceEEEE-C--C--ChHHhhHHHHHHhCCC---CCCCCH
Confidence 4667765 899999988 7 3 9999999999999999 444444
No 94
>smart00340 HALZ homeobox associated leucin zipper.
Probab=86.05 E-value=1.2 Score=35.38 Aligned_cols=25 Identities=44% Similarity=0.428 Sum_probs=22.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Q 003069 91 KLSAMNKLLMEENDRLQKQVSHLVY 115 (851)
Q Consensus 91 kl~~en~~l~ee~~~l~~e~~~L~~ 115 (851)
-|+..++.+.+||++|++|+++||.
T Consensus 9 ~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 9 LLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3888999999999999999998885
No 95
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=85.60 E-value=48 Score=34.62 Aligned_cols=58 Identities=16% Similarity=0.346 Sum_probs=39.2
Q ss_pred CCCccccccCCCc--ceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHHHhh--hccccccc
Q 003069 417 DDGWSLLSSDGGE--DVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADY 489 (851)
Q Consensus 417 ~~~W~~l~~~g~~--dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~FLrd--~R~eWd~~ 489 (851)
+++|.......++ +|+|-.|+.. + . ++.--++...+.++||+.|+++|.| .|.+||..
T Consensus 21 ~~~W~~~~~k~~~~~~i~vy~r~~~----~-s----------~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~ 82 (209)
T cd08870 21 GQAWQQVMDKSTPDMSYQAWRRKPK----G-T----------GLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDET 82 (209)
T ss_pred CCcceEhhhccCCCceEEEEecccC----C-C----------CceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhh
Confidence 3789987643322 2666555542 2 1 2234555667767899999999998 89999973
No 96
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=84.60 E-value=3 Score=45.60 Aligned_cols=91 Identities=15% Similarity=0.111 Sum_probs=62.8
Q ss_pred HHHHhcCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeEE
Q 003069 735 LKQLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCV 814 (851)
Q Consensus 735 ~~~L~~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 814 (851)
.+.|-..|.+|+..+.+ -.++|.|++|.++|+++.+++.+.|..--..+.. .+.. .+.++.+.|-...+..+++
T Consensus 10 ~~il~~~~~gi~~~d~~----~~i~~~N~a~~~~~g~~~~~~~g~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~ 83 (348)
T PRK11073 10 GQILNSLINSILLLDDD----LAIHYANPAAQQLLAQSSRKLFGTPLPELLSYFS-LNIE-LMRESLQAGQGFTDNEVTL 83 (348)
T ss_pred HHHHhcCcCeEEEECCC----CeEeeEcHHHHHHhCCCHHHHcCCCHHHHcCcch-hhHH-HHHHHHHcCCcccccceEE
Confidence 34445688888887754 6999999999999999999999988765554322 2222 3345555554445567888
Q ss_pred cCCCCeEEEcceEEeEeec
Q 003069 815 SSMGRAVSYEQAVAWKVLD 833 (851)
Q Consensus 815 ss~Grrf~i~~a~vW~l~D 833 (851)
.+.|+.++++ +.+..+.
T Consensus 84 ~~~g~~~~~~--~~~~~~~ 100 (348)
T PRK11073 84 VIDGRSHILS--LTAQRLP 100 (348)
T ss_pred EECCceEEEE--EEEEEcc
Confidence 8899888763 4444444
No 97
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=84.56 E-value=6.6 Score=42.26 Aligned_cols=163 Identities=17% Similarity=0.181 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCccccccCCC-----cceEEEEecCCCCCCCCCCccCcCCCCc-eEEEEeeeccccc
Q 003069 396 VLRTFSQRLSRGFNDAINGFLDDGWSLLSSDGG-----EDVTVAINSSPNKFLGSQYNWSMLPAFG-GVLCAKASMLLQN 469 (851)
Q Consensus 396 sl~~LaqRM~~~F~~~v~~s~~~~W~~l~~~g~-----~dVrv~~r~~~~~~~~~~~~~~g~~~~g-~Vl~A~tS~~L~p 469 (851)
-++.||..-+..|- .+.-...--|.+..+.+. |....+..+.. +.. |+| .+..+-++-+. +
T Consensus 3 ~~~~lA~~am~Ell-~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~----~~~-------~~~~~~eASR~~glV-~ 69 (229)
T cd08875 3 GLLELAEEAMDELL-KLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHG----GSK-------PGGFTTEASRACGLV-M 69 (229)
T ss_pred HHHHHHHHHHHHHH-HHhccCCCCceecCCCCccccCHHHHhhcccCcC----CCC-------CCCCeEEEEeeeEEE-e
Confidence 68899999999998 455555778988765432 22211111111 111 234 67888888888 7
Q ss_pred CChHHHHHHHhhhcccccc-ccccchhhhhhccCCCCCCCCCCCCCCCcceEecccccCCCCceEEEEEecCCCCCcccc
Q 003069 470 VPPALLVRFLREHRSEWAD-YGVDAYSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDV 548 (851)
Q Consensus 470 vpp~~vf~FLrd~R~eWd~-~~~~~~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~ 548 (851)
+.|..|.+.|.|. .+|.. |..++-.+..++....+..| ..+..+.|+..+-+-++ --
T Consensus 70 m~~~~lVe~lmD~-~kW~~~Fp~iv~~a~tl~vistg~~g-------------------~~~G~lqlmyael~~pS--pL 127 (229)
T cd08875 70 MNAIKLVEILMDV-NKWSELFPGIVSKAKTLQVISTGNGG-------------------NRNGTLQLMYAELQVPS--PL 127 (229)
T ss_pred cCHHHHHHHHhCh-hhhhhhhhhhcceeeEEEEeeCCCCC-------------------CCCceehhhhhhcccCc--cc
Confidence 9999999999993 23443 22222222222222222222 22336666666543332 34
Q ss_pred ccccceEEEeeccCcCCCCCCceeEEEE-eeccCC----CCCC---CCcccCceEEec
Q 003069 549 ALARDMYLLQLCSGIDENTVGACAQLVF-APIDES----FADD---APLLASGFRVIP 598 (851)
Q Consensus 549 ~~~~~~liLQe~~~~De~~~Gs~s~vVy-APvD~~----ds~~---v~LLPSGF~I~P 598 (851)
+..|+...|.-|.-.+ .| +.+|. =.+|.. .+.. --.+||||-|-|
T Consensus 128 Vp~Re~~fLRyc~~l~---dG--~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~ 180 (229)
T cd08875 128 VPTREFYFLRYCKQLE---DG--LWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQD 180 (229)
T ss_pred ccCCeEEEEEEEEEeC---CC--eEEEEEEeecccccCCCCCCccEEEEecCcEEEEE
Confidence 6678999999886444 35 34332 244432 1121 237999999998
No 98
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=84.44 E-value=6.1 Score=48.47 Aligned_cols=102 Identities=10% Similarity=0.007 Sum_probs=69.4
Q ss_pred CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhccccccc-CChhcHHHHHHHHHHHHHhCcccCCCeeEEcCCCC
Q 003069 741 HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKI-LDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGR 819 (851)
Q Consensus 741 ~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~s-ae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Gr 819 (851)
.|.+|+..+ .+-.++|.|+++.++|+++.+++.+.+...- ..+....+....+.+....+-.....-....+.|+
T Consensus 145 ~~~~i~~~d----~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~ 220 (799)
T PRK11359 145 LDRPVIVLD----PERRIVQCNRAFTEMFGYCISEASGMQPDTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLTRTGE 220 (799)
T ss_pred CCCcEEEEc----CCCcEEEEChhhHhhhCCCHHHHCCCChHHhcCCCCCcHHHHHHHHHhhccCCCCcceeEEeCCCCC
Confidence 556665544 3578999999999999999999998865432 22333344444555555555444334455678899
Q ss_pred eEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 820 AVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 820 rf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
.+++. ..+-.+.|++|...|...++.+
T Consensus 221 ~~~~~-~~~~~v~d~~g~~~~~~~~~~D 247 (799)
T PRK11359 221 KIWIK-ASISPVYDVLAHLQNLVMTFSD 247 (799)
T ss_pred EEEEE-eeeeeeecCCCceeEEEEEeeh
Confidence 88874 4556678889998887777654
No 99
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=83.93 E-value=16 Score=37.35 Aligned_cols=130 Identities=18% Similarity=0.199 Sum_probs=71.3
Q ss_pred CCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHH-HHHHHhh--hccccccccccc
Q 003069 417 DDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPAL-LVRFLRE--HRSEWADYGVDA 493 (851)
Q Consensus 417 ~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~-vf~FLrd--~R~eWd~~~~~~ 493 (851)
.++|..... +.+++.+..+... ++ ..+-..++...+ +.+++. +.++|.| .|.+||..
T Consensus 18 ~~~W~~~~~-~~~~~~~~~~~~~----~~----------~~~~~~k~~~~v-~~~~~~~~~~~~~d~~~r~~Wd~~---- 77 (206)
T smart00234 18 EPGWVLSSE-NENGDEVRSILSP----GR----------SPGEASRAVGVV-PMVCADLVEELMDDLRYRPEWDKN---- 77 (206)
T ss_pred CCccEEccc-cCCcceEEEEccC----CC----------CceEEEEEEEEE-ecChHHHHHHHHhcccchhhCchh----
Confidence 468988753 2344444444332 21 135677778888 678875 6678887 79999973
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCcceEecccccCCCCceEEEEEecCCCCCccccccccceEEEeeccCcCCCCCCceeE
Q 003069 494 YSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDVALARDMYLLQLCSGIDENTVGACAQ 573 (851)
Q Consensus 494 ~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~~~~De~~~Gs~s~ 573 (851)
.. ..+.+-.+. .++.|........- ..+-.||..++.-+. .+ ..|+ +
T Consensus 78 ~~--------------------~~~~ie~~~----~~~~i~~~~~~~~~----~p~~~RDfv~~r~~~-~~--~~~~--~ 124 (206)
T smart00234 78 VA--------------------KAETLEVID----NGTVIYHYVSKFVA----GPVSPRDFVFVRYWR-EL--VDGS--Y 124 (206)
T ss_pred cc--------------------cEEEEEEEC----CCCeEEEEEEeccc----CcCCCCeEEEEEEEE-Ec--CCCc--E
Confidence 10 123333332 22333333322211 134468888887753 34 3353 3
Q ss_pred EE-EeeccCC----CCCC--CCcccCceEEecC
Q 003069 574 LV-FAPIDES----FADD--APLLASGFRVIPL 599 (851)
Q Consensus 574 vV-yAPvD~~----ds~~--v~LLPSGF~I~P~ 599 (851)
+| ..-++-. .+.. +.++++||.|-|+
T Consensus 125 vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~ 157 (206)
T smart00234 125 AVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPL 157 (206)
T ss_pred EEEEEECCCCCCCCCCCceEEEEeceEEEEEEC
Confidence 33 3345443 2222 2589999999994
No 100
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=82.78 E-value=67 Score=33.80 Aligned_cols=70 Identities=11% Similarity=0.227 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHH-
Q 003069 399 TFSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVR- 477 (851)
Q Consensus 399 ~LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~- 477 (851)
+.++-=...|..-+.. .++|..-. +..++|+|.+++.. + . | .+-+.-+-+ ++||+.||+
T Consensus 8 ~~~~~~~~~~~~~l~~--~~~W~l~~-~~~~gi~V~s~~~~----~-~---------~--~~fk~~~~v-~~~~~~l~~~ 67 (209)
T cd08906 8 RQGKEALAVVEQILAQ--EENWKFEK-NNDNGDTVYTLEVP----F-H---------G--KTFILKAFM-QCPAELVYQE 67 (209)
T ss_pred HHHHHHHHHHHHHhhc--ccCCEEEE-ecCCCCEEEEeccC----C-C---------C--cEEEEEEEE-cCCHHHHHHH
Confidence 3344444455544433 45898542 33578999986653 1 1 2 333666777 799999985
Q ss_pred HHhh--hcccccc
Q 003069 478 FLRE--HRSEWAD 488 (851)
Q Consensus 478 FLrd--~R~eWd~ 488 (851)
.|.| .|.+||.
T Consensus 68 ll~D~~~~~~W~~ 80 (209)
T cd08906 68 VILQPEKMVLWNK 80 (209)
T ss_pred HHhChhhccccCc
Confidence 5777 8999996
No 101
>PRK10060 RNase II stability modulator; Provisional
Probab=82.54 E-value=7.9 Score=47.33 Aligned_cols=97 Identities=8% Similarity=-0.011 Sum_probs=66.0
Q ss_pred HHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccc-cccCChhcHHHHHHHHHHHHHhCcccCCCee
Q 003069 735 LKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIML-DKILDEAGRKILCTEFAKIMQQGFAYLPGGM 812 (851)
Q Consensus 735 ~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lps-r~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 812 (851)
++.++. ++.+|+..+.. =.++|+|+++.++++|+-+|+.+.+. .+-..+.+.+...+.+..+.+.|-.......
T Consensus 113 ~~~v~~~~~~gI~i~D~~----g~I~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 188 (663)
T PRK10060 113 AEQVVSEANSVIVILDSR----GNIQRFNRLCEEYTGLKEHDVIGQSVFKLFMSRREAAASRRNIRGFFRSGNAYEVERW 188 (663)
T ss_pred HHHHHhhCCceEEEEeCC----CCEEEEcHHHHHHHCcCHHHHcCCCHHHHhCChhhHHHHHHHHHHHHhcCCceEEEEE
Confidence 444554 67777777655 46999999999999999999999886 4444555555556667777777754433444
Q ss_pred EEcCCCCeEEEcceEEeEeecCCCC
Q 003069 813 CVSSMGRAVSYEQAVAWKVLDDDDS 837 (851)
Q Consensus 813 Riss~Grrf~i~~a~vW~l~D~~g~ 837 (851)
-..+.|+++++..... +.+.+|.
T Consensus 189 ~~~~~G~~~~~~~~~~--~~~~~g~ 211 (663)
T PRK10060 189 IKTRKGQRLFLFRNKF--VHSGSGK 211 (663)
T ss_pred EEeCCCCEEEEEeeeE--EEcCCCC
Confidence 5678898887643321 3445554
No 102
>smart00338 BRLZ basic region leucin zipper.
Probab=81.92 E-value=5.3 Score=34.18 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=23.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 92 LSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 92 l~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
|..+...+..++..|..++.+|..|+..|++++.
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455566666777777777777778888777653
No 103
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=81.68 E-value=4.2 Score=43.57 Aligned_cols=54 Identities=31% Similarity=0.282 Sum_probs=25.9
Q ss_pred hhhhHHHHHHHH-----HHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 003069 70 QNRRCREKQRKE-----ASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQ 123 (851)
Q Consensus 70 QNRRak~Kkrq~-----~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~e 123 (851)
||-|-|.|.|-+ -..+..+|.+|..+|+.|++.++.|-.+-++|+.+.+.++++
T Consensus 82 QtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~ 140 (292)
T KOG4005|consen 82 QTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQE 140 (292)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 555655554322 223444555666666666555555444434444444433333
No 104
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=81.65 E-value=9.1 Score=33.16 Aligned_cols=82 Identities=7% Similarity=0.017 Sum_probs=56.3
Q ss_pred EcccHHHHHhhccCHHHHhccc----ccccCChhcHHHHHHHHHH-HHHhCcccCCCeeEEcCCCCeEEEcceEEeEeec
Q 003069 759 TFANQAGLDMLETTLVALQDIM----LDKILDEAGRKILCTEFAK-IMQQGFAYLPGGMCVSSMGRAVSYEQAVAWKVLD 833 (851)
Q Consensus 759 ~YaN~aAL~l~e~~w~el~~lp----sr~sae~~~r~er~~lL~~-v~~qG~~~~y~GvRiss~Grrf~i~~a~vW~l~D 833 (851)
+|.|+...++|+|+-+++ +.+ +..-.-|.+|+.-.+.+.+ ..+.|-.....==.+.+.|+..|++. ..=-+.|
T Consensus 2 i~~s~~~~~i~G~~~~~~-~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~~e~R~~~~~G~~~wi~~-~~~~~~d 79 (91)
T PF08447_consen 2 IYWSDNFYEIFGYSPEEI-GKPDFEEWLERIHPDDRERVRQAIQQAALQNGEPFEIEYRIRRKDGEYRWIEV-RGRPIFD 79 (91)
T ss_dssp EEE-THHHHHHTS-HHHH-TCBEHHHHHHHB-TTTHHHHHHHHHHHHHHTT-EEEEEEEEEGTTSTEEEEEE-EEEEEET
T ss_pred EEEeHHHHHHhCCCHHHh-ccCCHHHHHhhcCHHHHHHHHHHHHHHhhccCcceEEEEEEECCCCCEEEEEE-EEEEEEC
Confidence 699999999999999999 766 5555567888888888888 56666444433334558898888854 4445568
Q ss_pred CCCCeeEEE
Q 003069 834 DDDSNHCLA 842 (851)
Q Consensus 834 ~~g~~~GqA 842 (851)
++|+..+..
T Consensus 80 ~~g~~~~~~ 88 (91)
T PF08447_consen 80 ENGKPIRII 88 (91)
T ss_dssp TTS-EEEEE
T ss_pred CCCCEEEEE
Confidence 999887654
No 105
>PRK09776 putative diguanylate cyclase; Provisional
Probab=81.30 E-value=6.9 Score=49.89 Aligned_cols=109 Identities=11% Similarity=0.037 Sum_probs=73.8
Q ss_pred HHHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccC-C
Q 003069 732 DALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYL-P 809 (851)
Q Consensus 732 ~~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~-y 809 (851)
++.++.+++ .|.+|+..+. |-.+.|.|+++.++++|+-+|+.+.+...-..|.+++.....+.++...+.... .
T Consensus 282 e~r~~~l~e~~~~~i~~~d~----dG~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 357 (1092)
T PRK09776 282 ETRFRNAMEYSAIGMALVGT----EGQWLQVNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLLSGEINSYSM 357 (1092)
T ss_pred HHHHHHHHHhCCceEEEEcC----CCcEEehhHHHHHHhCCCHHHHccCCceeccCcchhHhHHHHHHHHHcCCccceee
Confidence 444566655 7777776554 579999999999999999999999988766666666666666666665443221 1
Q ss_pred CeeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEee
Q 003069 810 GGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMF 845 (851)
Q Consensus 810 ~GvRiss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F 845 (851)
.-....+.|+.++++-... -+.|++|...|...++
T Consensus 358 e~~~~~~dG~~~~~~~~~~-~~~~~~g~~~~~i~~~ 392 (1092)
T PRK09776 358 EKRYYRRDGEVVWALLAVS-LVRDTDGTPLYFIAQI 392 (1092)
T ss_pred eeEEEcCCCCEEEEEEEEE-EEECCCCCEeeehhhH
Confidence 2234567888877754333 3457788877754433
No 106
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=79.61 E-value=82 Score=33.36 Aligned_cols=55 Identities=15% Similarity=0.293 Sum_probs=37.0
Q ss_pred CCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHHHhhhccccccc
Q 003069 418 DGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADY 489 (851)
Q Consensus 418 ~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~FLrd~R~eWd~~ 489 (851)
.+|..++ ..+.|.++.+|.. +| . .+.--++++-+ |.+|..|...|-|-|.+||..
T Consensus 27 k~w~~~~--~~~~~el~~~k~~---~g-s----------~l~~~r~~~~i-~a~~~~vl~~lld~~~~Wd~~ 81 (204)
T cd08908 27 KGWVSYS--TSEQAELSYKKVS---EG-P----------PLRLWRTTIEV-PAAPEEILKRLLKEQHLWDVD 81 (204)
T ss_pred cCCcccC--CCCcEEEEEeccC---CC-C----------CcEEEEEEEEe-CCCHHHHHHHHHhhHHHHHHH
Confidence 3777774 3577899998863 13 1 24556667778 677777775555559999973
No 107
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=78.94 E-value=87 Score=32.76 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=40.1
Q ss_pred CCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHHHhh--hccccccc
Q 003069 416 LDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADY 489 (851)
Q Consensus 416 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~FLrd--~R~eWd~~ 489 (851)
-..+|..... .++|+|-.|... + . ++.--++...+.++|++.+|++|.| .|.+||..
T Consensus 19 ~~~~W~l~~~--~~~i~Vy~r~~~----~-s----------~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~ 77 (207)
T cd08911 19 EPDGWEPFIE--KKDMLVWRREHP----G-T----------GLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDAT 77 (207)
T ss_pred cCCCcEEEEE--cCceEEEEeccC----C-C----------CcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhh
Confidence 4456987753 467998887764 2 1 1223455454558999999999998 89999973
No 108
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=78.71 E-value=2.5 Score=51.42 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=44.5
Q ss_pred HHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 29 VEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 29 l~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
+..|..+|..|..|+...-..++.+. |+..+.||.||+++++....-+
T Consensus 568 ~sllkayyaln~~ps~eelskia~qv----glp~~vvk~wfE~~~a~e~sv~ 615 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQV----GLPFAVVKAWFEDEEAEEMSVE 615 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHh----cccHHHHHHHHHhhhhhhhhhc
Confidence 78899999999999999999999999 9999999999999998887643
No 109
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=78.70 E-value=24 Score=38.18 Aligned_cols=55 Identities=25% Similarity=0.414 Sum_probs=39.4
Q ss_pred CCCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHHHhh--hccccccc
Q 003069 415 FLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADY 489 (851)
Q Consensus 415 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~FLrd--~R~eWd~~ 489 (851)
...++|..-.. .++|+|.++... . +++-++-+-+ ++|++.||++|.| .|.+||..
T Consensus 56 ~~~~~W~l~~~--~~gI~Vyt~~~s------~-----------~~~fK~e~~v-d~s~e~v~~lL~D~~~r~~Wd~~ 112 (240)
T cd08913 56 VAKDNWVLSSE--KNQVRLYTLEED------K-----------FLSFKVEMVV-HVDAAQAFLLLSDLRRRPEWDKH 112 (240)
T ss_pred cccCCCEEEEc--cCCEEEEEEeCC------C-----------ccEEEEEEEE-cCCHHHHHHHHhChhhhhhhHhh
Confidence 45678976532 489999985431 1 1233455667 8999999999998 89999973
No 110
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=75.20 E-value=99 Score=31.39 Aligned_cols=148 Identities=18% Similarity=0.247 Sum_probs=82.7
Q ss_pred HHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHHH
Q 003069 400 FSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFL 479 (851)
Q Consensus 400 LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~FL 479 (851)
|+++....|.. ......++|.........++. +++... + . ...+...++..-+ +.++..+|..|
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~W~~~~~~~~~~~~--~~~~~~---~-~--------~~~~~~~k~~~~v-~~~~~~~~~~~ 65 (206)
T PF01852_consen 2 LAEELMQEELA-LAQEDEDGWKLYKDKKNGDVY--YKKVSP---S-D--------SCPIKMFKAEGVV-PASPEQVVEDL 65 (206)
T ss_dssp HHHHHHHHHHH-HHHHTCTTCEEEEEETTTCEE--EEEEEC---S-S--------STSCEEEEEEEEE-SSCHHHHHHHH
T ss_pred HHHHHHHHHHH-HhhcCCCCCeEeEccCCCeEE--EEEeCc---c-c--------cccceEEEEEEEE-cCChHHHHHHH
Confidence 45555556653 335677899988633334443 444321 1 1 1134566777777 78888777777
Q ss_pred hhhccccccccccchhhhhhccCCCCCCCCCCCCCCCcceEecccccCCCCceEEEEEecCCCCCccccccccceEEEee
Q 003069 480 REHRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDVALARDMYLLQL 559 (851)
Q Consensus 480 rd~R~eWd~~~~~~~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe 559 (851)
.+.+.+||.. +. + .+.+-.+ ++++.|.....+..-. ..+.+||..+++-
T Consensus 66 ~~~~~~Wd~~----~~-----~---------------~~~le~~----~~~~~i~~~~~~~~~~---~p~~~RDfv~~~~ 114 (206)
T PF01852_consen 66 LDDREQWDKM----CV-----E---------------AEVLEQI----DEDTDIVYFVMKSPWP---GPVSPRDFVFLRS 114 (206)
T ss_dssp HCGGGHHSTT----EE-----E---------------EEEEEEE----ETTEEEEEEEEE-CTT---TTSSEEEEEEEEE
T ss_pred HhhHhhcccc----hh-----h---------------heeeeec----CCCCeEEEEEecccCC---CCCCCcEEEEEEE
Confidence 7643399974 11 0 2333333 2334555554443221 1356788988887
Q ss_pred ccCcCCCCCCceeEEEEeeccCCC-----CCCC--CcccCceEEec
Q 003069 560 CSGIDENTVGACAQLVFAPIDESF-----ADDA--PLLASGFRVIP 598 (851)
Q Consensus 560 ~~~~De~~~Gs~s~vVyAPvD~~d-----s~~v--~LLPSGF~I~P 598 (851)
.. .+ ..|+ -.+++..||-+. +..| -+++|||.|-|
T Consensus 115 ~~-~~--~~~~-~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~ 156 (206)
T PF01852_consen 115 WR-KD--EDGT-YVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRP 156 (206)
T ss_dssp EE-EC--TTSE-EEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEE
T ss_pred EE-Ee--ccce-EEEEEeeeccccccccccCcceeeeeeEeEEEEE
Confidence 53 33 3343 355666777652 2333 48899999999
No 111
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=74.49 E-value=4.9 Score=33.34 Aligned_cols=47 Identities=15% Similarity=0.221 Sum_probs=36.5
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhh
Q 003069 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRR 73 (851)
Q Consensus 18 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRR 73 (851)
+++|..+|-++-..+-..++..+ ...++|+++ |+...+|.-|..||.
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~f----gv~~sTv~~I~K~k~ 47 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREF----GVSRSTVSTILKNKD 47 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHH----T--CCHHHHHHHCHH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHh----CCCHHHHHHHHHhHH
Confidence 46788999999988888888876 588899999 999999999998853
No 112
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=74.26 E-value=4.4 Score=43.68 Aligned_cols=53 Identities=21% Similarity=0.354 Sum_probs=38.6
Q ss_pred CCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHHHhh--hcccccc
Q 003069 416 LDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWAD 488 (851)
Q Consensus 416 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~FLrd--~R~eWd~ 488 (851)
..++|.... ..++|+|.++... ++++-+.=+-+ ++|++.||++|.| .|.+||.
T Consensus 53 ~~~~W~l~~--~k~gIkVytr~~s-----------------~~l~fk~e~~v-d~s~~~v~dlL~D~~~R~~WD~ 107 (235)
T cd08873 53 AKSDWTVAS--STTSVTLYTLEQD-----------------GVLSFCVELKV-QTCASDAFDLLSDPFKRPEWDP 107 (235)
T ss_pred ccCCCEEEE--cCCCEEEEEecCC-----------------CceEEEEEEEe-cCCHHHHHHHHhCcchhhhhhh
Confidence 467897653 3579999998731 12333333336 8999999999998 8999996
No 113
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=72.14 E-value=32 Score=39.82 Aligned_cols=106 Identities=8% Similarity=0.063 Sum_probs=67.9
Q ss_pred HHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeE
Q 003069 735 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC 813 (851)
Q Consensus 735 ~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 813 (851)
.+.++ +.+.+|+..+.+ -.++|.|+++.++|+++.+++.+.+...-.++.. . ....+.++.+.|-.....-++
T Consensus 264 ~~~i~~~~~~~i~~~d~~----g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 337 (607)
T PRK11360 264 NELILESIADGVIAIDRQ----GKITTMNPAAEVITGLQRHELVGKPYSELFPPNT-P-FASPLLDTLEHGTEHVDLEIS 337 (607)
T ss_pred HHHHHHhccCeEEEEcCC----CCEEEECHHHHHHhCCChHHhcCCcHHHHcCCch-h-HHHHHHHHHhcCCCccceEEE
Confidence 44444 478888888765 5789999999999999999999988766665432 2 233444555554433333344
Q ss_pred EcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 814 VSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 814 iss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
+...+....+ ...+=.+.|++|...|...+|.+
T Consensus 338 ~~~~~~~~~~-~~~~~~i~~~~g~~~~~i~~~~D 370 (607)
T PRK11360 338 FPGRDRTIEL-SVSTSLLHNTHGEMIGALVIFSD 370 (607)
T ss_pred EEcCCCcEEE-EEEEeeEEcCCCCEEEEEEEEee
Confidence 4433333323 23333567889999888877754
No 114
>PRK09776 putative diguanylate cyclase; Provisional
Probab=71.18 E-value=24 Score=45.10 Aligned_cols=102 Identities=14% Similarity=0.101 Sum_probs=66.5
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCCh---hcHHHHHHHHHHHHHhCcc-c-CCCeeEE
Q 003069 740 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDE---AGRKILCTEFAKIMQQGFA-Y-LPGGMCV 814 (851)
Q Consensus 740 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~---~~r~er~~lL~~v~~qG~~-~-~y~GvRi 814 (851)
..+++|+..+.+ =.++|.|+++.++++++-+|+.+.|...-... ........ +.+....+-. . ...-...
T Consensus 544 ~~~~~i~~~D~~----g~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 618 (1092)
T PRK09776 544 SIGEAVVCTDMA----MKVTFMNPVAEKMTGWTQEEALGVPLLTVLHITFGDNGPLMEN-IYSCLTSRSAAYLEQDVVLH 618 (1092)
T ss_pred ccccEEEEECCC----CeEEEEcHHHHHHhCCCHHHHcCCCHHHHcccccCCcchhhHH-HHHHHhcCCCccccceEEEE
Confidence 367788877655 57999999999999999999999876543321 11122222 2332222211 1 1122346
Q ss_pred cCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 815 SSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 815 ss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
.+.|++++++- .+-.+.|++|...|.-.++.+
T Consensus 619 ~~~G~~~~~~~-~~~pi~~~~g~~~g~v~~~~D 650 (1092)
T PRK09776 619 CRSGGSYDVHY-SITPLSTLDGENIGSVLVIQD 650 (1092)
T ss_pred eCCCcEEEEEE-EeeeeecCCCCEEEEEEEEEe
Confidence 78999998864 566788999999988777654
No 115
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=69.92 E-value=21 Score=32.41 Aligned_cols=97 Identities=11% Similarity=-0.016 Sum_probs=63.1
Q ss_pred CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeEEcCCCCe
Q 003069 741 HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRA 820 (851)
Q Consensus 741 ~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grr 820 (851)
.|.+++..+.. =.+.|-|++|.++|... ...++-|-.--..+...+.-...+.++...+- ...-+.+...||.
T Consensus 8 ~~~~i~~vD~~----~~I~~~n~~a~~~f~~~-~~~iGr~l~~~~~~~~~~~l~~~i~~~~~~~~--~~~~~~~~~~~~~ 80 (106)
T PF13596_consen 8 MPIGIIFVDRN----LRIRYFNPAAARLFNLS-PSDIGRPLFDIHPPLSYPNLKKIIEQVRSGKE--EEFEIVIPNGGRW 80 (106)
T ss_dssp SSSEEEEEETT----SBEEEE-SCGC-SS----GGGTTSBCCCSS-HHHHHHHHHHHHHHHTTSB--SEEEEEEEETTEE
T ss_pred CCCCEEEEcCC----CeEEEeChhHhhhcCCC-hHHCCCCHHHcCCccchHHHHHHHHHHHcCCC--ceEEEEecCCCEE
Confidence 67788777765 68999999999999966 45567777666566666777777777765442 1123345566777
Q ss_pred EEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 821 VSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 821 f~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
|.+ .+=-+.|++|++.|...+|.+
T Consensus 81 ~~~---~~~P~~~~~g~~~G~v~~~~D 104 (106)
T PF13596_consen 81 YLV---RYRPYRDEDGEYAGAVITFQD 104 (106)
T ss_dssp EEE---EEEEEE-TTS-EEEEEEEEEE
T ss_pred EEE---EEEEEECCCCCEEEEEEEEEe
Confidence 766 556677999999999999965
No 116
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.81 E-value=14 Score=29.93 Aligned_cols=38 Identities=26% Similarity=0.237 Sum_probs=26.3
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 88 VNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 88 ~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
.-+.|++..+.++.+++++.+|.+.|+.|...|+..++
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34457777777777777777777777777777766554
No 117
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=69.21 E-value=7.4 Score=42.97 Aligned_cols=36 Identities=28% Similarity=0.172 Sum_probs=22.0
Q ss_pred HHHhhHHHHHHHHHH----HHHHHHHHHHhHHHHHhhccC
Q 003069 92 LSAMNKLLMEENDRL----QKQVSHLVYENGYMRQQLHSA 127 (851)
Q Consensus 92 l~~en~~l~ee~~~l----~~e~~~L~~EN~~Lk~el~~~ 127 (851)
+.+||+.|++++.++ +...+.++.||++||+.|+-.
T Consensus 71 l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 444555555554433 222334889999999988743
No 118
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=68.58 E-value=22 Score=43.72 Aligned_cols=102 Identities=12% Similarity=-0.020 Sum_probs=66.4
Q ss_pred HHHHhcCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccC--C--C
Q 003069 735 LKQLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYL--P--G 810 (851)
Q Consensus 735 ~~~L~~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~--y--~ 810 (851)
..++-+.|.+++..+.+ -.++|.|+++.++|+++-+|+.+-|...-..+..+......+.++...|-... + .
T Consensus 15 ~~~le~~~~~i~~~d~~----g~i~~~N~~~~~l~G~s~eeliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 90 (799)
T PRK11359 15 FPALEQNMMGAVLINEN----DEVLFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRE 90 (799)
T ss_pred HHHHHhhcCcEEEEcCC----CeEEEEcHHHHHHhCCCHHHHcCCCHHHhcCccccccchHHHhhhhccCCcccccccee
Confidence 34555688888877654 68999999999999999999999777665555544444444555544443211 1 1
Q ss_pred eeEEcCCCCeEEEcceEEeEeecCCCCeeEEE
Q 003069 811 GMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLA 842 (851)
Q Consensus 811 GvRiss~Grrf~i~~a~vW~l~D~~g~~~GqA 842 (851)
-....+.|++++++-.. ..++.+|...+.+
T Consensus 91 ~~~~~~dG~~~~v~~~~--~~~~~~g~~~~~~ 120 (799)
T PRK11359 91 LQLEKKDGSKIWTRFAL--SKVSAEGKVYYLA 120 (799)
T ss_pred eEEecCCcCEEEEEEEe--eeeccCCceEEEE
Confidence 12356789888886433 4556777765543
No 119
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=68.06 E-value=53 Score=30.80 Aligned_cols=120 Identities=13% Similarity=0.073 Sum_probs=63.6
Q ss_pred eeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeecceeCCCcEEEEE
Q 003069 217 ACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCE 296 (851)
Q Consensus 217 ~~glV~~~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVvD 296 (851)
.+-.+...+.++.+.|.|.+.|.+-+|.++-+..++.|. ..+ +....+ .|+ ..|--...+|...-++..+++.-
T Consensus 5 ~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~~---~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd05018 5 GEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPNE---YEA-TVKLKV-GPV-KGTFKGKVELSDLDPPESYTITG 78 (144)
T ss_pred eEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCCCe---EEE-EEEEEE-ccE-EEEEEEEEEEEecCCCcEEEEEE
Confidence 344577788999999999999999999876555544221 110 111111 222 12322234554433344444432
Q ss_pred eecCCCCCCCCCCCCCCccceeecccceEEeecCCCceEEEEEEeeeccCCCccccchhhh
Q 003069 297 RSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLY 357 (851)
Q Consensus 297 vSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~ 357 (851)
..-.. ..+ ...=--+-+.+. +|+|+|+|.-+++..- .+..+..+++
T Consensus 79 ~~~~~----------~~~---~~~~~~~~l~~~-~~gT~v~~~~~~~~~g-~l~~l~~~~~ 124 (144)
T cd05018 79 EGKGG----------AGF---VKGTARVTLEPD-GGGTRLTYTADAQVGG-KLAQLGSRLI 124 (144)
T ss_pred EEcCC----------Cce---EEEEEEEEEEec-CCcEEEEEEEEEEEcc-ChhhhCHHHH
Confidence 21110 011 111123457787 6779999999999653 3333344443
No 120
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=67.63 E-value=10 Score=41.61 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHh
Q 003069 99 LMEENDRLQKQVSHLVYENGYMRQQ 123 (851)
Q Consensus 99 l~ee~~~l~~e~~~L~~EN~~Lk~e 123 (851)
|..||+.+..++.+|+.|+..|++-
T Consensus 227 leken~~lr~~v~~l~~el~~~~~~ 251 (269)
T KOG3119|consen 227 LEKENEALRTQVEQLKKELATLRRL 251 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444433
No 121
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=66.90 E-value=58 Score=30.87 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=70.7
Q ss_pred eeeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccce-eeEEeecceeCCCcEEE
Q 003069 216 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARD-FWLLRYSTSLEDGSLVV 294 (851)
Q Consensus 216 R~~glV~~~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re-~~fLRyckq~~~G~waV 294 (851)
|++-.|...+..+-+++.|.+.|.+-+|.++-..++..+.++.. + +. ..|. +.+++|+.. ++
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~--~--~~-------~~~~~~~~~~~~~~------v~ 64 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVV--L--EQ-------TGKQGILFFKFEAR------VV 64 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEE--E--EE-------eeeEEEEeeeeeEE------EE
Confidence 45667788999999999999999999998866665544333310 0 00 0111 222333322 12
Q ss_pred EEeecCCCCCCCCCCCCCCccceeec----c--cce-EEeecCC-CceEEEEEEeeeccCCCccccchhhhhchHHHHHH
Q 003069 295 CERSLTSSTGGPTGPPPSSFVRAEML----A--SGF-LIRPCEG-GGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQK 366 (851)
Q Consensus 295 vDvSld~~~~~~~~~~~~~~~r~rrl----P--SGc-lIq~~~n-G~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar 366 (851)
.++.... + + ....+.+.. + .|+ -+++.++ |+|.|+|--|++... .+| -++++.-+-=+.+
T Consensus 65 ~~~~~~~--~-~-----~~~i~~~~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~-~~p---~~l~~~~~~~~~~ 132 (144)
T cd08866 65 LELRERE--E-F-----PRELDFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDF-FAP---VFLVEFVLRQDLP 132 (144)
T ss_pred EEEEEec--C-C-----CceEEEEEcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCC-CCC---HHHHHHHHHHHHH
Confidence 2211100 0 0 000111110 1 232 3678887 789999988877653 333 3565444434666
Q ss_pred HHHHHHH-HHH
Q 003069 367 MTMAAMR-HIR 376 (851)
Q Consensus 367 ~w~~aLr-~~e 376 (851)
..+.+|| +||
T Consensus 133 ~~l~~lr~~ae 143 (144)
T cd08866 133 TNLLAIRAEAE 143 (144)
T ss_pred HHHHHHHHHHh
Confidence 7777775 555
No 122
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=66.89 E-value=67 Score=29.72 Aligned_cols=35 Identities=9% Similarity=0.017 Sum_probs=27.7
Q ss_pred eeEEeeChhhHHHHhcCccchhhcCCcceeeeecc
Q 003069 218 CGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIP 252 (851)
Q Consensus 218 ~glV~~~~~~LVe~lmD~~~W~~~f~~~~~l~~~~ 252 (851)
+..|...+.++-+.|.|.+.|.+-+|.+..+....
T Consensus 6 ~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~ 40 (140)
T cd07821 6 SVTIDAPADKVWALLSDFGGLHKWHPAVASCELEG 40 (140)
T ss_pred EEEECCCHHHHHHHHhCcCchhhhccCcceEEeec
Confidence 44577789999999999999998888776555544
No 123
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=66.47 E-value=18 Score=34.31 Aligned_cols=47 Identities=28% Similarity=0.293 Sum_probs=30.0
Q ss_pred hhhhhhhhhhh--hHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHH
Q 003069 62 PKQIKVWFQNR--RCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQK 108 (851)
Q Consensus 62 ~rQVkvWFQNR--Rak~Kkrq~~~~l~~~n~kl~~en~~l~ee~~~l~~ 108 (851)
.-+...||++. +.-.+.+++...+++++.+++++|..|+++..+++.
T Consensus 14 ~l~y~l~~g~~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 14 WLQYSLWFGKNGILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34667899765 344444555556666677777777777777666654
No 124
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=66.45 E-value=10 Score=39.69 Aligned_cols=65 Identities=18% Similarity=0.372 Sum_probs=45.4
Q ss_pred Hhhhcc--CCCCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHHHhh--hc
Q 003069 408 FNDAIN--GFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HR 483 (851)
Q Consensus 408 F~~~v~--~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~FLrd--~R 483 (851)
||.=|+ .-.+.+|..... .++|+|-.|... + . ++..-++...++.++|+.++++|.| .|
T Consensus 13 ~~~~~~~~~~~~~~W~l~~~--~~~i~Vy~r~~~----~-s----------~~~~~k~~~~~~~~s~~~~~~~l~D~~~r 75 (207)
T cd08910 13 ACAELQQPALDGAAWELLVE--SSGISIYRLLDE----Q-S----------GLYEYKVFGVLEDCSPSLLADVYMDLEYR 75 (207)
T ss_pred HHHHhcCCCCCCCCeEEEEe--cCCeEEEEeccC----C-C----------CcEEEEEEEEEcCCCHHHHHHHHhCHHHH
Confidence 443444 334467987753 468999887653 2 1 3345666777856999999999998 89
Q ss_pred cccccc
Q 003069 484 SEWADY 489 (851)
Q Consensus 484 ~eWd~~ 489 (851)
.+||..
T Consensus 76 ~~Wd~~ 81 (207)
T cd08910 76 KQWDQY 81 (207)
T ss_pred HHHHHH
Confidence 999973
No 125
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=65.35 E-value=18 Score=29.93 Aligned_cols=9 Identities=44% Similarity=0.438 Sum_probs=3.2
Q ss_pred HHHHhHHHH
Q 003069 113 LVYENGYMR 121 (851)
Q Consensus 113 L~~EN~~Lk 121 (851)
|..+|..|+
T Consensus 37 L~~en~~L~ 45 (54)
T PF07716_consen 37 LEEENEQLR 45 (54)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 126
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=64.66 E-value=11 Score=40.94 Aligned_cols=37 Identities=27% Similarity=0.291 Sum_probs=24.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHH---HHHHHhHHHHHhhccC
Q 003069 91 KLSAMNKLLMEENDRLQKQVS---HLVYENGYMRQQLHSA 127 (851)
Q Consensus 91 kl~~en~~l~ee~~~l~~e~~---~L~~EN~~Lk~el~~~ 127 (851)
++.++|+.|++|+.+++.+.. +++.||++||+.|+-.
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 455556666666655554443 6789999999987643
No 127
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=64.25 E-value=10 Score=41.01 Aligned_cols=55 Identities=22% Similarity=0.363 Sum_probs=43.1
Q ss_pred CCCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHHHhh--hccccccc
Q 003069 415 FLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADY 489 (851)
Q Consensus 415 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~FLrd--~R~eWd~~ 489 (851)
...++|..-. ..++|+|.++. + . .+++-++-+-+ ++|++.+|++|.| .|.+||..
T Consensus 53 a~~~~W~l~~--dkdgIkVytr~------~-s----------~~l~fk~e~~v-dvs~~~l~~LL~D~~~r~~Wd~~ 109 (236)
T cd08914 53 AAKSGWEVTS--TVEKIKIYTLE------E-H----------DVLSVWVEKHV-KRPAHLAYRLLSDFTKRPLWDPH 109 (236)
T ss_pred cccCCCEEEE--ccCCEEEEEec------C-C----------CcEEEEEEEEE-cCCHHHHHHHHhChhhhchhHHh
Confidence 4578998653 35789999874 1 1 24777788888 8999999999999 89999973
No 128
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=63.64 E-value=76 Score=31.38 Aligned_cols=108 Identities=11% Similarity=0.180 Sum_probs=61.3
Q ss_pred eeeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCCCccHHHHHHHhh--cccccccccceeeEEeecceeCCCcEE
Q 003069 216 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQT--YAPTTLAAARDFWLLRYSTSLEDGSLV 293 (851)
Q Consensus 216 R~~glV~~~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~--~v~SPLvp~Re~~fLRyckq~~~G~wa 293 (851)
..+-+|.-.+..+-+++-|..+|-+.||.+.-+.++..|..|.. +.+ ....+ ..+.-|.=|.+ +....|-
T Consensus 4 ~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~----~r~~i~~~~~--g~~~~w~s~~~--~~~~~~~ 75 (146)
T cd08860 4 DNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVR----FRLTMHPDAN--GTVWSWVSERT--LDPVNRT 75 (146)
T ss_pred eeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEE----EEEEEEeccC--CEEEEEEEEEE--ecCCCcE
Confidence 34567777999999999999999999998765555555443311 223 22221 11222222333 3334443
Q ss_pred EEEeecCCCCCCCCCCCCCCccceeecccceEEeecCCCceEEEEEEeeecc
Q 003069 294 VCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLD 345 (851)
Q Consensus 294 VvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d 345 (851)
|.=..... +| | ..+=-...+++.++| |+|++.-+++..
T Consensus 76 i~~~~~~~---~p-------~---~~m~~~W~f~~~~~g-T~V~~~~~~~~~ 113 (146)
T cd08860 76 VRARRVET---GP-------F---AYMNIRWEYTEVPEG-TRMRWVQDFEMK 113 (146)
T ss_pred EEEEEecC---CC-------c---ceeeeeEEEEECCCC-EEEEEEEEEEEC
Confidence 33112211 11 1 112233456888877 999999998865
No 129
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=63.03 E-value=17 Score=32.29 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=17.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003069 92 LSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (851)
Q Consensus 92 l~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el 124 (851)
|+.+++.+++++..+..+...|+.||.+|+++.
T Consensus 23 Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 23 LQMENEELKEKNNELKEENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555543
No 130
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=61.60 E-value=18 Score=40.18 Aligned_cols=34 Identities=29% Similarity=0.302 Sum_probs=20.5
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q 003069 90 RKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQ 123 (851)
Q Consensus 90 ~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~e 123 (851)
+.+..+++.+..+|++|+.++++|..|..+|||=
T Consensus 251 E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 251 EALLGELEGLEKRNEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555666666666666666666666666653
No 131
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=60.66 E-value=45 Score=31.67 Aligned_cols=134 Identities=11% Similarity=0.109 Sum_probs=73.0
Q ss_pred eeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeecceeCCCcEEEEE
Q 003069 217 ACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCE 296 (851)
Q Consensus 217 ~~glV~~~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVvD 296 (851)
.+-.|...+..+.+++-|.+.|.+.+|.++-..++..+.++ +.+++.+..|. -.|++. .|++- ..+..+ -=
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~----~~~~~~~~~~~-~~~~~~-~~~~~--~~~~~i-~~ 73 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDE----LEAELTVGFGG-IRESFT-SRVTL--VPPESI-EA 73 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCE----EEEEEEEeecc-ccEEEE-EEEEe--cCCCEE-EE
Confidence 45567778889999999999999999877554444433322 11122232232 133333 33331 123222 11
Q ss_pred eecCCCCCCCCCCCCCCccceeecccceEEeecCCCceEEEEEEeeeccCCCccccchhhhhchHHHHHHHHHHHH-HHH
Q 003069 297 RSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAM-RHI 375 (851)
Q Consensus 297 vSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~aL-r~~ 375 (851)
.++++ + | +.+=--..+++.++|.|.|++.-|++..- .++.++++.-+.=..+..+.++ +.|
T Consensus 74 ~~~~g----~-------~---~~~~g~w~~~p~~~~~T~v~~~~~~~~~~----~l~~~l~~~~~~~~~~~~l~~f~~~~ 135 (138)
T cd07813 74 ELVDG----P-------F---KHLEGEWRFKPLGENACKVEFDLEFEFKS----RLLEALAGLVFDEVAKKMVDAFEKRA 135 (138)
T ss_pred EecCC----C-------h---hhceeEEEEEECCCCCEEEEEEEEEEECC----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 0 1 11113456789999999999999999863 2344444333333456666666 355
Q ss_pred Hh
Q 003069 376 RQ 377 (851)
Q Consensus 376 e~ 377 (851)
++
T Consensus 136 ~~ 137 (138)
T cd07813 136 KQ 137 (138)
T ss_pred hh
Confidence 54
No 132
>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).
Probab=58.35 E-value=41 Score=23.56 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=37.0
Q ss_pred HHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHH
Q 003069 737 QLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEF 797 (851)
Q Consensus 737 ~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL 797 (851)
.++. .+..++..+.+ -.+.|.|..+.++++++..++.+.+...-..+..++.-...+
T Consensus 5 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (67)
T smart00091 5 AILESLPDGIFVLDLD----GRILYANPAAEELLGYSPEELIGKSLLELIHPEDREEVQEAL 62 (67)
T ss_pred HHHhhCCceEEEEcCC----CeEEEECHHHHHHhCCCHHHHcCCcHHHhcCcccHHHHHHHH
Confidence 3443 45555555543 467899999999999999998877655555555543333333
No 133
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=57.40 E-value=16 Score=38.37 Aligned_cols=55 Identities=18% Similarity=0.372 Sum_probs=39.9
Q ss_pred CCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHHHhh----hcccccc
Q 003069 416 LDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE----HRSEWAD 488 (851)
Q Consensus 416 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~FLrd----~R~eWd~ 488 (851)
..++|.... + .++|+|.++++.. .. |-+ -++-.-+ |++|+.||++|.| .|.+||.
T Consensus 20 ~~~~W~~~~-~-~~~i~v~~~~~~~--~~-----------~~~--~k~e~~i-~~s~~~~~~~l~d~~~~~r~~W~~ 78 (208)
T cd08903 20 DESGWKTCR-R-TNEVAVSWRPSAE--FA-----------GNL--YKGEGIV-YATLEQVWDCLKPAAGGLRVKWDQ 78 (208)
T ss_pred cccCCEEEE-c-CCCEEEEeeecCC--CC-----------CcE--EEEEEEe-cCCHHHHHHHHHhccchhhhhhhh
Confidence 567898775 3 3799999998752 01 222 3444556 8999999999985 6899996
No 134
>PRK13560 hypothetical protein; Provisional
Probab=56.96 E-value=74 Score=38.80 Aligned_cols=107 Identities=14% Similarity=0.066 Sum_probs=61.4
Q ss_pred HHHHhc-CCCeEeecCCCCCCCCeeEcc-cHHHHHhhccCHHHHhcccccccCChhcHHHH------------------H
Q 003069 735 LKQLWH-HSDAIMCCSLKTNASPVFTFA-NQAGLDMLETTLVALQDIMLDKILDEAGRKIL------------------C 794 (851)
Q Consensus 735 ~~~L~~-~~~avl~h~~~~~~dP~F~Ya-N~aAL~l~e~~w~el~~lpsr~sae~~~r~er------------------~ 794 (851)
++.++. .|.+|+..+.. -.++|. |.++.++|+++.+++.+.+..... +..+++. .
T Consensus 334 l~~l~~~~~~~i~~~d~~----g~i~~~nn~~~~~~~G~~~~e~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (807)
T PRK13560 334 LRAIIEAAPIAAIGLDAD----GNICFVNNNAAERMLGWSAAEVMGKPLPGMD-PELNEEFWCGDFQEWYPDGRPMAFDA 408 (807)
T ss_pred HHHHHHhCcccEEEEcCC----CCEEEecCHHHHHHhCCCHHHHcCCCccccC-hhhhhhhhhchhhhcCCcCCcchhhh
Confidence 344443 67777766554 456665 678888999999999997753322 2111111 0
Q ss_pred HHHHHHHHhCcccCCCee-EEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 795 TEFAKIMQQGFAYLPGGM-CVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 795 ~lL~~v~~qG~~~~y~Gv-Riss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
..+.+..++|-.....-+ ...+.|..+++. ..+-.+.|++|...|.-.++.+
T Consensus 409 ~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~-~~~~p~~d~~g~~~~~~~~~~D 461 (807)
T PRK13560 409 CPMAKTIKGGKIFDGQEVLIEREDDGPADCS-AYAEPLHDADGNIIGAIALLVD 461 (807)
T ss_pred hhHHHHHhcCCcccCceEEEEcCCCCeEEEE-EEEeeeECCCCCEEEEEEEeeh
Confidence 112233444443222222 344567766663 3555678999999887666543
No 135
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=56.13 E-value=15 Score=43.55 Aligned_cols=31 Identities=23% Similarity=0.176 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 003069 98 LLMEENDRLQKQVSHLVYENGYMRQQLHSAP 128 (851)
Q Consensus 98 ~l~ee~~~l~~e~~~L~~EN~~Lk~el~~~~ 128 (851)
-|+..+..+.+|-++|+.||+-||++|..+-
T Consensus 306 ~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~ 336 (655)
T KOG4343|consen 306 GLEARLQALLSENEQLKKENATLKRQLDELV 336 (655)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 3445556677777889999999999987543
No 136
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=54.86 E-value=67 Score=27.36 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=25.1
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003069 89 NRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (851)
Q Consensus 89 n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el 124 (851)
-..|......+..++..|..++..|..++..|+.++
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345666667777777777777777777777777664
No 137
>PRK10884 SH3 domain-containing protein; Provisional
Probab=54.44 E-value=42 Score=35.64 Aligned_cols=40 Identities=18% Similarity=0.069 Sum_probs=30.4
Q ss_pred HhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 86 QTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 86 ~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
.+....|+.+|+.+++++..++.+.+.|+.||..++++..
T Consensus 131 ~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 131 DSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344557888888888888888888888888888887654
No 138
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=54.00 E-value=29 Score=41.31 Aligned_cols=40 Identities=30% Similarity=0.359 Sum_probs=29.5
Q ss_pred HHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003069 82 ASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMR 121 (851)
Q Consensus 82 ~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk 121 (851)
-..++..-.++.+||+.|+.||..|..++..|..||.++|
T Consensus 304 ~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 304 MLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
Confidence 3345555566788888888888888888888888887653
No 139
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=53.88 E-value=56 Score=38.74 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=14.9
Q ss_pred cCCHHHHHHHHHhHhcCCCCCHHHHHHHHH
Q 003069 23 RYTPEQVEALERVYSECPKPSSLRRQQLIR 52 (851)
Q Consensus 23 r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~ 52 (851)
.++++++..|.- +.-.|...-|.-.++
T Consensus 41 ~ltpee~kalGi---egDTP~DTlrTlva~ 67 (472)
T TIGR03752 41 ELSPEELKALGI---EGDTPADTLRTLVAE 67 (472)
T ss_pred cCCcchhHhcCC---CCCCccchHHHHHHH
Confidence 577777666643 234555555554443
No 140
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=53.58 E-value=27 Score=37.64 Aligned_cols=47 Identities=30% Similarity=0.364 Sum_probs=38.8
Q ss_pred HHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 79 RKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 79 rq~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
-.++..++.+|..|++.|+.|..++.++..++..++.|.+.++++.+
T Consensus 103 ~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~ 149 (292)
T KOG4005|consen 103 TEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQ 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHH
Confidence 45677888889999999999999999888888888888888877653
No 141
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=53.30 E-value=30 Score=34.13 Aligned_cols=42 Identities=26% Similarity=0.412 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003069 74 CREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVY 115 (851)
Q Consensus 74 ak~Kkrq~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~ 115 (851)
||.|+-+....++.++..|..+-+.|++|+.++..|++-++.
T Consensus 68 CR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 68 CRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKS 109 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555665555556665656655555555555555554444443
No 142
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=53.22 E-value=61 Score=30.67 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=26.2
Q ss_pred eeeEEeeChhhHHHHhcCccchhhcCCc--ceeee
Q 003069 217 ACGLVSLDPTKIAEILKDCPSWFRDCRC--LDVLS 249 (851)
Q Consensus 217 ~~glV~~~~~~LVe~lmD~~~W~~~f~~--~~~l~ 249 (851)
.+.+|...+..+-+++.|.++|-+..|. ++++.
T Consensus 3 ~s~~i~ap~~~V~~~l~D~~~~p~~~p~~~~~~~~ 37 (142)
T cd08861 3 HSVTVAAPAEDVYDLLADAERWPEFLPTVHVERLE 37 (142)
T ss_pred EEEEEcCCHHHHHHHHHhHHhhhccCCCceEEEEE
Confidence 3556777899999999999999997784 44443
No 143
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=52.89 E-value=32 Score=39.24 Aligned_cols=49 Identities=10% Similarity=0.027 Sum_probs=39.1
Q ss_pred HHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccC
Q 003069 733 ALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKIL 785 (851)
Q Consensus 733 ~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sa 785 (851)
..++.+++ .|++|+..+.+ -.+.|.|++|.++|+++|++..+.+...-.
T Consensus 98 ~~~~~~~~~~~~~i~~~d~~----g~i~~~N~~a~~l~g~~~~~~~g~~~~~~~ 147 (430)
T PRK11006 98 KRFRSGAESLPDAVVLTTEE----GNIFWCNGLAQQLLGFRWPEDNGQNILNLL 147 (430)
T ss_pred HHHHHHHHhCCCeEEEEcCC----CceeHHHHHHHHHhCCCChHhCCCcHHHHh
Confidence 44566664 88888888754 689999999999999999999888765444
No 144
>COG1415 Uncharacterized conserved protein [Function unknown]
Probab=52.69 E-value=69 Score=36.59 Aligned_cols=126 Identities=25% Similarity=0.147 Sum_probs=86.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHH----------------------HHHHHhhCCCCCCCCCCC--hHHHHHHHhcCC
Q 003069 687 SRLGPHAGPKALPGSPEALTLARWIS----------------------RSYRIHTGGELLRADSLT--GDALLKQLWHHS 742 (851)
Q Consensus 687 s~~~~~~~~~~~~~~pe~~~l~~~i~----------------------~Sy~~~~G~~L~~~~~~~--~~~~~~~L~~~~ 742 (851)
+.|..|.|-.+||.-+.+..|+..|+ |||-..+|.+--.+.+.+ .-.+-+.|+.-.
T Consensus 7 AdLPLH~GhvP~wL~~rM~kLs~~i~elive~yG~~e~l~RlAdP~WFQsf~nviGmDW~SSGsTTv~~gaLK~~l~~~d 86 (373)
T COG1415 7 ADLPLHTGHVPPWLLPRMKKLSGAILELIVEEYGTDELLRRLADPFWFQSFNNVIGMDWDSSGSTTVTTGALKEALNPED 86 (373)
T ss_pred ccccccCCCCChHHHHHHHHHHHHHHHHHHHHhCcHHHHHHhcCcHHHHHHhhhhcccccCCCCeeeeHHHHHHhcCccc
Confidence 35678888899999999999888665 466666777764432221 123334667778
Q ss_pred CeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHH----HHHhCcccCC-CeeEEcCC
Q 003069 743 DAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAK----IMQQGFAYLP-GGMCVSSM 817 (851)
Q Consensus 743 ~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~----v~~qG~~~~y-~GvRiss~ 817 (851)
.-|..|++| |-.+.+| -+|+..+--+.-+++.+=.+-.++.++ +.|+|| ++| .++=+|.+
T Consensus 87 lgi~V~GGK-------------G~~~~~t-p~El~~~ae~~~ld~~~l~~~SRlvAKvDn~~lQDGy-dLYhH~~vvse~ 151 (373)
T COG1415 87 LGIKVAGGK-------------GRNARKT-PDELESIAERFGLDAEKLVEASRLVAKVDNVLLQDGY-DLYHHTFVVSED 151 (373)
T ss_pred CceEEecCc-------------chhhccC-hHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHhcch-hheeEEEEEcCC
Confidence 888888888 2223333 356666666666666666666666666 578999 666 49999999
Q ss_pred CCeEEEcceE
Q 003069 818 GRAVSYEQAV 827 (851)
Q Consensus 818 Grrf~i~~a~ 827 (851)
|+-.-|.++.
T Consensus 152 G~w~VIQQGM 161 (373)
T COG1415 152 GRWAVIQQGM 161 (373)
T ss_pred CCEEEEEcCc
Confidence 9998888765
No 145
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.58 E-value=36 Score=30.25 Aligned_cols=42 Identities=26% Similarity=0.230 Sum_probs=29.4
Q ss_pred HHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 84 RLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 84 ~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
.++.+-+.|+.+|..+..+....+.....|..||..||+|..
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~ 63 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQN 63 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556667777777777766666666778888888887753
No 146
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=51.34 E-value=36 Score=40.05 Aligned_cols=38 Identities=29% Similarity=0.317 Sum_probs=30.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCC
Q 003069 92 LSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAPA 129 (851)
Q Consensus 92 l~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~~~~ 129 (851)
|........++|.+|++++++|..+|..|-++|.+.-+
T Consensus 277 LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt 314 (472)
T KOG0709|consen 277 LESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQT 314 (472)
T ss_pred HhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 44455666778889999999999999999999987654
No 147
>PRK10724 hypothetical protein; Provisional
Probab=51.04 E-value=1.1e+02 Score=30.75 Aligned_cols=133 Identities=11% Similarity=0.192 Sum_probs=73.6
Q ss_pred eeeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeecceeCCCcEEEE
Q 003069 216 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVC 295 (851)
Q Consensus 216 R~~glV~~~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVv 295 (851)
+.+.+|.-.+..+.+.+.|.++|-+..|-..-..++....++ +.+++.+--.- -.+-+.-|+... .++ .+.+
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~----~~a~l~v~~~g--~~~~f~srv~~~-~~~-~I~~ 89 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQ----MTAAVDVSKAG--ISKTFTTRNQLT-SNQ-SILM 89 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCE----EEEEEEEeeCC--ccEEEEEEEEec-CCC-EEEE
Confidence 556888999999999999999999988855333333333233 23444332222 233333333332 233 3322
Q ss_pred EeecCCCCCCCCCCCCCCccceeecccceEEeecCCCceEEEEEEeeeccCCCccccchhhhhchHHH--HHHHHHHHHH
Q 003069 296 ERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKIL--AQKMTMAAMR 373 (851)
Q Consensus 296 DvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~af--gar~w~~aLr 373 (851)
..+++ | | +.+=.-.-++|.++|.|+|+.--+.|+.. .++.+++ +..| .++..+.|.+
T Consensus 90 -~~~~G----p-------F---~~l~g~W~f~p~~~~~t~V~~~l~fef~s----~l~~~~~--~~~~~~~~~~mv~AF~ 148 (158)
T PRK10724 90 -QLVDG----P-------F---KKLIGGWKFTPLSQEACRIEFHLDFEFTN----KLIELAF--GRVFKELASNMVQAFT 148 (158)
T ss_pred -EecCC----C-------h---hhccceEEEEECCCCCEEEEEEEEEEEch----HHHHHHH--HHHHHHHHHHHHHHHH
Confidence 22232 2 1 22333344678888889999988888653 3444444 3333 5566665553
Q ss_pred -HHHh
Q 003069 374 -HIRQ 377 (851)
Q Consensus 374 -~~e~ 377 (851)
.++.
T Consensus 149 ~Ra~~ 153 (158)
T PRK10724 149 VRAKE 153 (158)
T ss_pred HHHHH
Confidence 3444
No 148
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=50.95 E-value=54 Score=35.22 Aligned_cols=49 Identities=22% Similarity=0.294 Sum_probs=35.1
Q ss_pred HHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 003069 80 KEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAP 128 (851)
Q Consensus 80 q~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~~~ 128 (851)
.+...++.++..|..++..+..+.+..+..+..|+.||.+|.+++.+..
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 3344455666667777777777777777778888899999988887654
No 149
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=50.55 E-value=3.2e+02 Score=28.64 Aligned_cols=71 Identities=14% Similarity=0.178 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHH
Q 003069 398 RTFSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVR 477 (851)
Q Consensus 398 ~~LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~ 477 (851)
.++++.....|-.-. ...++|.... .+.++++|.++...+ . | ---++-.-+ |+|++.||+
T Consensus 7 ~~~~~~~~~~~~~~~--~~~~~W~~~~-~~~~gi~v~s~~~~~-----~---------~--k~~k~e~~i-~~~~~~l~~ 66 (209)
T cd08905 7 IKQGEEALQKSLSIL--QDQEGWKTEI-VAENGDKVLSKVVPD-----I---------G--KVFRLEVVV-DQPLDNLYS 66 (209)
T ss_pred HHHHHHHHHHHHHHh--ccccCCEEEE-ecCCCCEEEEEEcCC-----C---------C--cEEEEEEEe-cCCHHHHHH
Confidence 345555555554444 2456898763 335677888765531 1 1 223445567 899999997
Q ss_pred HHhh---hcccccc
Q 003069 478 FLRE---HRSEWAD 488 (851)
Q Consensus 478 FLrd---~R~eWd~ 488 (851)
+|.+ .+.+|+.
T Consensus 67 ~l~~d~e~~~~W~~ 80 (209)
T cd08905 67 ELVDRMEQMGEWNP 80 (209)
T ss_pred HHHhchhhhceecc
Confidence 7774 8999997
No 150
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=49.36 E-value=26 Score=30.07 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=27.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 93 SAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 93 ~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
+.|-+.+++.+.+|+.+..+|..||..||+...
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~ 45 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLKQNAS 45 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445678889999999999999999999998753
No 151
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=48.88 E-value=57 Score=34.60 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=49.4
Q ss_pred HHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeE
Q 003069 735 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC 813 (851)
Q Consensus 735 ~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 813 (851)
++.++ +.|..|+..+.+ -..+|+|++|.++|++++++..+.|...-..+. .+.++..++.....-- .
T Consensus 8 l~~~~~~~~~~i~~~d~~----g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~-------~~~~~l~~~~~~~~~~-~ 75 (333)
T TIGR02966 8 FRAAAQALPDAVVVLDEE----GQIEWCNPAAERLLGLRWPDDLGQRITNLIRHP-------EFVEYLAAGRFSEPLE-L 75 (333)
T ss_pred HHHHHHhCcCcEEEECCC----CcEEEEcHHHHHHhCCChHHHcCCcHHHHccCH-------HHHHHHHhcccCCCeE-e
Confidence 44444 478888887765 459999999999999999999987765544332 2344444444422222 2
Q ss_pred EcCCCCeEEEc
Q 003069 814 VSSMGRAVSYE 824 (851)
Q Consensus 814 iss~Grrf~i~ 824 (851)
..+.|..+++.
T Consensus 76 ~~~~~~~~~~~ 86 (333)
T TIGR02966 76 PSPINSERVLE 86 (333)
T ss_pred ecCCCCceEEE
Confidence 22455555543
No 152
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=48.56 E-value=3.7e+02 Score=28.73 Aligned_cols=56 Identities=25% Similarity=0.443 Sum_probs=38.3
Q ss_pred CCCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHHHhh--hcccccc
Q 003069 415 FLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWAD 488 (851)
Q Consensus 415 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~FLrd--~R~eWd~ 488 (851)
...++|..-.. .+||.|..++++. .++... -++ +|+ +.-|+.|++|+.+ +|.+||.
T Consensus 20 ~~~~~Wkl~k~--~~~~~v~~k~~~e--f~gkl~-R~E----gvv---------~~~~~ev~d~v~~~~~r~~Wd~ 77 (202)
T cd08902 20 ILEEEWRVAKK--SKDVTVWRKPSEE--FGGYLY-KAQ----GVV---------EDVYNRIVDHIRPGPYRLDWDS 77 (202)
T ss_pred ccccCcEEEEe--CCCEEEEEecCCc--CCCceE-EEE----EEe---------cCCHHHHHHHHhcccchhcccc
Confidence 36789986643 3899999997752 232210 011 343 5778999999998 8999997
No 153
>smart00338 BRLZ basic region leucin zipper.
Probab=48.33 E-value=1.1e+02 Score=26.03 Aligned_cols=45 Identities=31% Similarity=0.441 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 003069 73 RCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYEN 117 (851)
Q Consensus 73 Rak~Kkrq~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN 117 (851)
+++.|++.....++.+...|..+|..|..+...+..++..|+.++
T Consensus 19 ~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 19 RSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777777777777788888888888888888888888887765
No 154
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=48.09 E-value=49 Score=36.82 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003069 73 RCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVY 115 (851)
Q Consensus 73 Rak~Kkrq~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~ 115 (851)
|-|.|||.+...+..+-..|.++|+.|++...++++|++.|+.
T Consensus 241 RYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 241 RYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666667777778889999999999999998887774
No 155
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=48.04 E-value=46 Score=30.27 Aligned_cols=42 Identities=29% Similarity=0.253 Sum_probs=27.1
Q ss_pred HHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 84 RLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 84 ~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
.++.+-+.++.+|..+.+++..+......|..||..||+|..
T Consensus 22 LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 22 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 455555566666666666666555555567788888887754
No 156
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=47.90 E-value=24 Score=39.62 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=21.0
Q ss_pred EEEEeeccCC----------CCCCCCcccCceEEecCCcc
Q 003069 573 QLVFAPIDES----------FADDAPLLASGFRVIPLDSK 602 (851)
Q Consensus 573 ~vVyAPvD~~----------ds~~v~LLPSGF~I~P~~~~ 602 (851)
++|.-||-.+ .+=+|-.=|-|.-|-|.+++
T Consensus 337 ~~isg~v~~sit~l~~~~~l~~~~i~f~~~g~~v~~~g~~ 376 (420)
T PF07407_consen 337 YFISGPVGPSITCLMKTYALYSVEIVFGEKGLYVRPTGSK 376 (420)
T ss_pred ceEeccccchHHHHHHHhhhheeEEEEcCCceEEeccCCc
Confidence 5777777765 35567777888888885543
No 157
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=47.17 E-value=51 Score=35.47 Aligned_cols=62 Identities=23% Similarity=0.416 Sum_probs=44.5
Q ss_pred hccCCCCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEE-EEeeecccccCChHHHHHHHhh--hccccc
Q 003069 411 AINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVL-CAKASMLLQNVPPALLVRFLRE--HRSEWA 487 (851)
Q Consensus 411 ~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl-~A~tS~~L~pvpp~~vf~FLrd--~R~eWd 487 (851)
+.-+-..++|..... .++|+|-.|...+ . |.++ .-++..-++.++++.++++|.| .|.+||
T Consensus 19 ~~~~~~~~~W~l~~~--~~gikVy~r~~~~-----s---------g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd 82 (235)
T cd08872 19 ALEDVGADGWQLFAE--EGEMKVYRREVEE-----D---------GVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWE 82 (235)
T ss_pred HHccCCCCCCEEEEe--CCceEEEEEECCC-----C---------CceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHH
Confidence 444556668987653 4689998877642 1 1222 3677777866999999999998 899999
Q ss_pred c
Q 003069 488 D 488 (851)
Q Consensus 488 ~ 488 (851)
.
T Consensus 83 ~ 83 (235)
T cd08872 83 T 83 (235)
T ss_pred h
Confidence 6
No 158
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=47.11 E-value=68 Score=28.59 Aligned_cols=42 Identities=31% Similarity=0.380 Sum_probs=26.5
Q ss_pred HHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003069 83 SRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (851)
Q Consensus 83 ~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el 124 (851)
..++.++..|+.+|..+.+++..+..+.++|+.|-...+..+
T Consensus 21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 21 ALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666667777777777777777776666666654444433
No 159
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=46.82 E-value=49 Score=31.68 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=27.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCC
Q 003069 91 KLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAPA 129 (851)
Q Consensus 91 kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~~~~ 129 (851)
.+-.+-..|+.....+-.|-..|++||+.||+.|.....
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555666677777777778888888888888876543
No 160
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.98 E-value=31 Score=27.99 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=14.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 93 SAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 93 ~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
..+++.|+..-+.+..+-..|..||+.|+.|+.
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443
No 161
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=45.44 E-value=1.1e+02 Score=36.64 Aligned_cols=100 Identities=14% Similarity=0.213 Sum_probs=66.2
Q ss_pred HHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeE
Q 003069 735 LKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC 813 (851)
Q Consensus 735 ~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 813 (851)
++.+++ -++.|++.+.+ =..+|.|++|.++|+++-+++.+.|-.--.... .+.++.++|-.. .....
T Consensus 82 L~aIL~sm~eGVi~vD~~----G~I~~iN~aA~~Llg~~~eel~Gk~i~eli~~~-------~l~~~le~~~~~-~~~~~ 149 (520)
T PRK10820 82 LSALLEALPEPVLSIDMK----GKVELANPASCQLFGQSEEKLRNHTAAQLINGF-------NFLRWLESEPQD-SHNEH 149 (520)
T ss_pred HHHHHHhCCCcEEEECCC----CeeeHhHHHHHHHHCcCHHHHCCCcHHHHcCcc-------hHHHHHHcCCCc-cceEE
Confidence 455554 69999999887 368999999999999998888887755443322 144556666542 22356
Q ss_pred EcCCCCeEEEcceEEeEeecCCCCe--eEEEEeecC
Q 003069 814 VSSMGRAVSYEQAVAWKVLDDDDSN--HCLAFMFMN 847 (851)
Q Consensus 814 iss~Grrf~i~~a~vW~l~D~~g~~--~GqAa~F~~ 847 (851)
+...|+.|.++-.-+. +.|++|.. .|.-.+|.+
T Consensus 150 v~~~g~~~~v~~~PI~-~~d~~g~~~~~GaVivlrd 184 (520)
T PRK10820 150 VVINGQDFLMEITPVY-LQDENDQHVLVGAVVMLRS 184 (520)
T ss_pred EEECCEEEEEEEEeee-ecCCCCceeEEEEEEEecc
Confidence 6677887776543332 22666664 677776643
No 162
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=44.03 E-value=54 Score=36.08 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 003069 97 KLLMEENDRLQKQVSHLVYENGYMRQQLHSAP 128 (851)
Q Consensus 97 ~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~~~ 128 (851)
..+......|++|.+.|+.+...|++|+..+.
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555666666666666666665543
No 163
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=43.77 E-value=2.7e+02 Score=25.80 Aligned_cols=110 Identities=15% Similarity=0.200 Sum_probs=62.7
Q ss_pred eeeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeecceeCCCcEEEE
Q 003069 216 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVC 295 (851)
Q Consensus 216 R~~glV~~~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVv 295 (851)
..+-.|...+.++.+.|.|.+.|.+.+|.+.-+.++..+.+|.-.. ..+.+ ...+.++-+.++|...- .... -.
T Consensus 5 ~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~-~~~i-~~ 78 (140)
T cd07819 5 SREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEM--VRIGV--GAYGIKDTYALEYTWDG-AGSV-SW 78 (140)
T ss_pred EEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEE--EEEEE--eeeeEEEEEEEEEEEcC-CCcE-EE
Confidence 3466788899999999999999999999886666555444332111 11111 22244555555665432 2221 11
Q ss_pred EeecCCCCCCCCCCCCCCccceeecccceEEeecCCCceEEEEEEeeeccC
Q 003069 296 ERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDA 346 (851)
Q Consensus 296 DvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~ 346 (851)
.. .++ . .+.... .-.-+.+.++ +|.|+|.-+++..-
T Consensus 79 ~~-~~~---~-------~~~~~~---~~~~~~~~~~-~t~vt~~~~~~~~~ 114 (140)
T cd07819 79 TL-VEG---E-------GNRSQE---GSYTLTPKGD-GTRVTFDLTVELTV 114 (140)
T ss_pred EE-ecc---c-------ceeEEE---EEEEEEECCC-CEEEEEEEEEEecC
Confidence 11 111 0 011111 2356788877 59999999998753
No 164
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=41.60 E-value=60 Score=33.26 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=17.9
Q ss_pred HhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003069 86 QTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (851)
Q Consensus 86 ~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el 124 (851)
+.+|..++.++..++++++.|+++.+.|..++..+++++
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443
No 165
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=41.50 E-value=64 Score=31.09 Aligned_cols=36 Identities=22% Similarity=0.207 Sum_probs=26.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003069 92 LSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSA 127 (851)
Q Consensus 92 l~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~~ 127 (851)
+-.+-..|+.....+-.|-..|++||..||+.+.+.
T Consensus 20 l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 20 LLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666777777788889999999888875
No 166
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=40.13 E-value=67 Score=35.05 Aligned_cols=47 Identities=15% Similarity=0.193 Sum_probs=34.6
Q ss_pred HHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCC
Q 003069 83 SRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAPA 129 (851)
Q Consensus 83 ~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~~~~ 129 (851)
.+.++.|..|..+.....+++..++.|++.|+..|-.|.+.+.=+..
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444556677777778888888888888888889888888764443
No 167
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=39.45 E-value=9.4 Score=32.89 Aligned_cols=44 Identities=32% Similarity=0.438 Sum_probs=29.3
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhh
Q 003069 19 TKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQ 70 (851)
Q Consensus 19 rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQ 70 (851)
++|.+||+++...+-..+.. ......++|+++ ||++.++..|-.
T Consensus 2 ~~r~~ys~e~K~~~v~~~~~----~g~sv~~va~~~----gi~~~~l~~W~~ 45 (76)
T PF01527_consen 2 RKRRRYSPEFKLQAVREYLE----SGESVSEVAREY----GISPSTLYNWRK 45 (76)
T ss_dssp -SS----HHHHHHHHHHHHH----HHCHHHHHHHHH----TS-HHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH----CCCceEeeeccc----ccccccccHHHH
Confidence 45678999988877666622 235788899999 999999999953
No 168
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=37.77 E-value=2e+02 Score=23.74 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 003069 101 EENDRLQKQVSHLVYENGYMRQ 122 (851)
Q Consensus 101 ee~~~l~~e~~~L~~EN~~Lk~ 122 (851)
.+...|+.+..+|+.+++.|+.
T Consensus 32 ~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 32 QEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3333344444444444444443
No 169
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=37.19 E-value=1.5e+02 Score=34.29 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 99 LMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 99 l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
++++.+.|.+++...+.|.+.|+.+++
T Consensus 354 Lrkerd~L~keLeekkreleql~~q~~ 380 (442)
T PF06637_consen 354 LRKERDSLAKELEEKKRELEQLKMQLA 380 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555666666654
No 170
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=36.43 E-value=1.2e+02 Score=26.81 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=21.3
Q ss_pred hhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 87 TVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 87 ~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
..+..|..+++.........-.+..+|+.||..|++|++
T Consensus 26 ~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 26 IENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444455667777777777664
No 171
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=36.08 E-value=60 Score=36.03 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=25.1
Q ss_pred HHHhhHHHHHHHHH---HHHHHHHHHHHhHHHHHhhccCC
Q 003069 92 LSAMNKLLMEENDR---LQKQVSHLVYENGYMRQQLHSAP 128 (851)
Q Consensus 92 l~~en~~l~ee~~~---l~~e~~~L~~EN~~Lk~el~~~~ 128 (851)
+..+|+.+++++.+ ...++++|+.||.+||+.|.-..
T Consensus 71 ~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~~ 110 (284)
T COG1792 71 LALENEELKKELAELEQLLEEVESLEEENKRLKELLDFKE 110 (284)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 44455555555533 35567789999999999987543
No 172
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=36.05 E-value=3.3e+02 Score=25.06 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=25.7
Q ss_pred eeeEEeeChhhHHHHhcCccchhhcCCcceee
Q 003069 217 ACGLVSLDPTKIAEILKDCPSWFRDCRCLDVL 248 (851)
Q Consensus 217 ~~glV~~~~~~LVe~lmD~~~W~~~f~~~~~l 248 (851)
.+.+|...+.++-+.+.|...|.+.++.+...
T Consensus 4 ~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~ 35 (141)
T cd07822 4 TEIEINAPPEKVWEVLTDFPSYPEWNPFVRSA 35 (141)
T ss_pred EEEEecCCHHHHHHHHhccccccccChhheeE
Confidence 45677788999999999999998888765433
No 173
>PHA03155 hypothetical protein; Provisional
Probab=35.56 E-value=38 Score=32.72 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhccC
Q 003069 103 NDRLQKQVSHLVYENGYMRQQLHSA 127 (851)
Q Consensus 103 ~~~l~~e~~~L~~EN~~Lk~el~~~ 127 (851)
.++|.+++++|+.||..||+++.+-
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~ 34 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQH 34 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4678899999999999999998653
No 174
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=35.55 E-value=99 Score=36.80 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=32.2
Q ss_pred HHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003069 82 ASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHS 126 (851)
Q Consensus 82 ~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~ 126 (851)
...++.+-++++.+.+.+......++..++.|..||+.|+++++.
T Consensus 78 asELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 78 AAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 334444555566666666666677788888999999999999853
No 175
>PF15058 Speriolin_N: Speriolin N terminus
Probab=34.28 E-value=56 Score=34.36 Aligned_cols=37 Identities=35% Similarity=0.394 Sum_probs=27.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCC
Q 003069 92 LSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAPA 129 (851)
Q Consensus 92 l~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~~~~ 129 (851)
++...+.+..||++|+|++. |..||.+||.-|...+.
T Consensus 10 lrhqierLv~ENeeLKKlVr-LirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 10 LRHQIERLVRENEELKKLVR-LIRENHELKSALGEACA 46 (200)
T ss_pred HHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHhhc
Confidence 45556777788888888776 66789999887665443
No 176
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=33.56 E-value=63 Score=27.98 Aligned_cols=11 Identities=27% Similarity=0.395 Sum_probs=4.0
Q ss_pred HHHHhHHHHHh
Q 003069 113 LVYENGYMRQQ 123 (851)
Q Consensus 113 L~~EN~~Lk~e 123 (851)
++.||..|+++
T Consensus 36 l~~e~~~L~~e 46 (80)
T PF04977_consen 36 LKKENEELKEE 46 (80)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 177
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=32.82 E-value=60 Score=30.26 Aligned_cols=21 Identities=10% Similarity=0.327 Sum_probs=17.2
Q ss_pred HHHHHHhCCccCCCChhhhhhhhhh
Q 003069 47 RQQLIRECPILSNIEPKQIKVWFQN 71 (851)
Q Consensus 47 R~~LA~~L~~~~gL~~rQVkvWFQN 71 (851)
..++|+.+ |++++.++.|-++
T Consensus 3 i~EvA~~~----gVs~~tLR~ye~~ 23 (99)
T cd04765 3 IGEVAEIL----GLPPHVLRYWETE 23 (99)
T ss_pred HHHHHHHH----CcCHHHHHHHHHH
Confidence 35678888 9999999999765
No 178
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=32.69 E-value=99 Score=32.05 Aligned_cols=66 Identities=21% Similarity=0.406 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHH
Q 003069 399 TFSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRF 478 (851)
Q Consensus 399 ~LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~F 478 (851)
++.|.|..-+.. .++|.... ..++|+|..++..+ . .+ -..++..-+ |.+|+.||++
T Consensus 9 ~~~~~~~~~~~~------~~~W~~~~--~~~~i~v~~~~~~~-----~--------~~--~~~k~~~~i-~~~~~~v~~~ 64 (206)
T cd08867 9 KLANEALQYIND------TDGWKVLK--TVKNITVSWKPSTE-----F--------TG--HLYRAEGIV-DALPEKVIDV 64 (206)
T ss_pred HHHHHHHHHhcC------cCCcEEEE--cCCCcEEEEecCCC-----C--------CC--EEEEEEEEE-cCCHHHHHHH
Confidence 344455544442 27898874 34789999875431 0 11 123556667 7999999999
Q ss_pred Hhh----hcccccc
Q 003069 479 LRE----HRSEWAD 488 (851)
Q Consensus 479 Lrd----~R~eWd~ 488 (851)
|.| .|.+||.
T Consensus 65 l~d~~~~~r~~Wd~ 78 (206)
T cd08867 65 IIPPCGGLRLKWDK 78 (206)
T ss_pred HHhcCccccccccc
Confidence 997 7999996
No 179
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=32.55 E-value=48 Score=32.33 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhccCCC
Q 003069 103 NDRLQKQVSHLVYENGYMRQQLHSAPA 129 (851)
Q Consensus 103 ~~~l~~e~~~L~~EN~~Lk~el~~~~~ 129 (851)
+++|..++++|++||..||+++.+...
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~~ 31 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSVG 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 467889999999999999999987543
No 180
>PHA03162 hypothetical protein; Provisional
Probab=32.45 E-value=46 Score=32.97 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhccC
Q 003069 103 NDRLQKQVSHLVYENGYMRQQLHSA 127 (851)
Q Consensus 103 ~~~l~~e~~~L~~EN~~Lk~el~~~ 127 (851)
+++|..|+++|++||..||+++.+-
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678899999999999999999653
No 181
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=32.21 E-value=62 Score=30.75 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=15.6
Q ss_pred HHHhhhhHHHHhhHHHHHHHHHHHHHHHHHH
Q 003069 84 RLQTVNRKLSAMNKLLMEENDRLQKQVSHLV 114 (851)
Q Consensus 84 ~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~ 114 (851)
.++++-..++.+++.++++|.+|+.+++.|+
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444455555555555555555555444
No 182
>PRK10884 SH3 domain-containing protein; Provisional
Probab=31.32 E-value=1.2e+02 Score=32.19 Aligned_cols=36 Identities=22% Similarity=0.152 Sum_probs=21.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003069 92 LSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSA 127 (851)
Q Consensus 92 l~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~~ 127 (851)
.......++++|.++.++++.++.|+..|+.+++..
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444466666666666666666666666665543
No 183
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=30.97 E-value=1.4e+02 Score=30.04 Aligned_cols=48 Identities=15% Similarity=0.052 Sum_probs=37.2
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003069 21 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (851)
Q Consensus 21 r~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kk 78 (851)
...+|+.|.+.|+..+ +. ....++|..+ |++...|+.|-++.+.+.|+
T Consensus 4 ~~~Lt~rqreVL~lr~-~G-----lTq~EIAe~L----GiS~~tVs~ie~ra~kkLr~ 51 (141)
T PRK03975 4 ESFLTERQIEVLRLRE-RG-----LTQQEIADIL----GTSRANVSSIEKRARENIEK 51 (141)
T ss_pred ccCCCHHHHHHHHHHH-cC-----CCHHHHHHHH----CCCHHHHHHHHHHHHHHHHH
Confidence 4578999999998843 22 3577899999 99999999998766655554
No 184
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=30.83 E-value=1.3e+02 Score=32.44 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=9.4
Q ss_pred HHHHHHHHhHHHHHhhcc
Q 003069 109 QVSHLVYENGYMRQQLHS 126 (851)
Q Consensus 109 e~~~L~~EN~~Lk~el~~ 126 (851)
|..+|..|+..|+++++.
T Consensus 194 EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 194 EYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344455555555555543
No 185
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=29.80 E-value=4.2e+02 Score=27.14 Aligned_cols=28 Identities=32% Similarity=0.332 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003069 97 KLLMEENDRLQKQVSHLVYENGYMRQQL 124 (851)
Q Consensus 97 ~~l~ee~~~l~~e~~~L~~EN~~Lk~el 124 (851)
+..+.+...+..++.+|..+|..|...+
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555666666677777776666444
No 186
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.75 E-value=1.4e+02 Score=34.01 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 77 KQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 77 Kkrq~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
|.+++-..+..+.+.+++..+.+++-..+|+.+++.|..+-..|+.+++
T Consensus 222 r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niD 270 (365)
T KOG2391|consen 222 RREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNID 270 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3344445566666666666666666666665555555555555544443
No 187
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=29.75 E-value=69 Score=27.00 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhHHHHHhhccC
Q 003069 104 DRLQKQVSHLVYENGYMRQQLHSA 127 (851)
Q Consensus 104 ~~l~~e~~~L~~EN~~Lk~el~~~ 127 (851)
....+++..|..||..|+.+|.+.
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888899998888753
No 188
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=29.61 E-value=3.2e+02 Score=25.95 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=45.0
Q ss_pred CcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHHHHHHhhhhHHHHhhHHH
Q 003069 20 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLL 99 (851)
Q Consensus 20 kr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~~~~l~~~n~kl~~en~~l 99 (851)
.+..|+..++..|.. ....+++ |++-++|+-.+........ ........-+....+.+
T Consensus 34 ~yR~Y~~~d~~~l~~-------------I~~lr~~----G~sl~eI~~~l~~~~~~~~-----~~~~~~~~~l~~~~~~l 91 (116)
T cd04769 34 NYRVYDAQHVECLRF-------------IKEARQL----GFTLAELKAIFAGHEGRAV-----LPWPHLQQALEDKKQEI 91 (116)
T ss_pred CceeeCHHHHHHHHH-------------HHHHHHc----CCCHHHHHHHHhccccCCc-----CcHHHHHHHHHHHHHHH
Confidence 566799999888843 2335777 9999999999876654320 00011112233444455
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 003069 100 MEENDRLQKQVSHLVYENGYMRQ 122 (851)
Q Consensus 100 ~ee~~~l~~e~~~L~~EN~~Lk~ 122 (851)
.++..+++...+.|..-.+.+++
T Consensus 92 ~~~i~~l~~~~~~l~~~~~~~~~ 114 (116)
T cd04769 92 RAQITELQQLLARLDAFEASLKD 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 55555555555444444444443
No 189
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=29.47 E-value=1.9e+02 Score=30.53 Aligned_cols=32 Identities=34% Similarity=0.394 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHhhhhHHHHhhHHHHHHH
Q 003069 71 NRRCREKQRKEASRLQTVNRKLSAMNKLLMEEN 103 (851)
Q Consensus 71 NRRak~Kkrq~~~~l~~~n~kl~~en~~l~ee~ 103 (851)
|||-+.-- .+-..++..|.+|+.+|+.|++..
T Consensus 47 NrrlQ~hl-~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 47 NRRLQQHL-NEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554432 333456666677777777766544
No 190
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=29.39 E-value=2.7e+02 Score=25.22 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=40.1
Q ss_pred HHHHHHhCCccCCCChhhhhhhhhhhhHHHHH---------HHHHHHHHhhhhHHHH-h---hHHHHHHHHHHHHHHHHH
Q 003069 47 RQQLIRECPILSNIEPKQIKVWFQNRRCREKQ---------RKEASRLQTVNRKLSA-M---NKLLMEENDRLQKQVSHL 113 (851)
Q Consensus 47 R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kk---------rq~~~~l~~~n~kl~~-e---n~~l~ee~~~l~~e~~~L 113 (851)
..++|+.+ |++++.++.|-+...-+-.+ ...-..++. -..++. . .+.++ +.-.+..+++.|
T Consensus 4 i~e~A~~~----gvs~~tLr~ye~~Gli~p~r~~~g~R~y~~~dv~~l~~-i~~L~~d~g~~l~~i~-~~l~l~~~~~~l 77 (91)
T cd04766 4 ISVAAELS----GMHPQTLRLYERLGLLSPSRTDGGTRRYSERDIERLRR-IQRLTQELGVNLAGVK-RILELEEELAEL 77 (91)
T ss_pred HHHHHHHH----CcCHHHHHHHHHCCCcCCCcCCCCCeeECHHHHHHHHH-HHHHHHHcCCCHHHHH-HHHHHHHHHHHH
Confidence 45778888 99999999998644322111 000001110 011111 1 11111 122467778888
Q ss_pred HHHhHHHHHhhcc
Q 003069 114 VYENGYMRQQLHS 126 (851)
Q Consensus 114 ~~EN~~Lk~el~~ 126 (851)
+.+++.|++++.+
T Consensus 78 ~~~l~~l~~~~~~ 90 (91)
T cd04766 78 RAELDELRARLRR 90 (91)
T ss_pred HHHHHHHHHHhcc
Confidence 8888888888764
No 191
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=29.29 E-value=65 Score=27.06 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHhHhcC--CCCCHHHHHHHHHhCCccCCCChhhhh
Q 003069 24 YTPEQVEALERVYSEC--PKPSSLRRQQLIRECPILSNIEPKQIK 66 (851)
Q Consensus 24 ~T~~Ql~~LE~~F~~~--~~Ps~~~R~~LA~~L~~~~gL~~rQVk 66 (851)
+|+.|.+.|...|+.. .+|-...-.+||.++ |+++.-+-
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~l----gis~st~~ 41 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEEL----GISKSTVS 41 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHh----CCCHHHHH
Confidence 5889999999999988 457788889999999 99986543
No 192
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=29.06 E-value=2e+02 Score=26.30 Aligned_cols=44 Identities=18% Similarity=0.219 Sum_probs=30.9
Q ss_pred HHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003069 84 RLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSA 127 (851)
Q Consensus 84 ~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~~ 127 (851)
.+..+-..|+.....|....+..+.+-.+|+.||..|++=+..+
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444566666677777777778888999999998877654
No 193
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=29.04 E-value=72 Score=24.32 Aligned_cols=43 Identities=9% Similarity=0.134 Sum_probs=33.1
Q ss_pred cCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhH
Q 003069 23 RYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRC 74 (851)
Q Consensus 23 r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRa 74 (851)
.+++.+...++..|... ..-.++|.++ |++...|+.|...-+.
T Consensus 10 ~l~~~~~~~~~~~~~~~-----~~~~~ia~~~----~~s~~~i~~~~~~~~~ 52 (55)
T cd06171 10 KLPEREREVILLRFGEG-----LSYEEIAEIL----GISRSTVRQRLHRALK 52 (55)
T ss_pred hCCHHHHHHHHHHHhcC-----CCHHHHHHHH----CcCHHHHHHHHHHHHH
Confidence 57888888898887543 2467789999 9999999998865443
No 194
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=28.94 E-value=82 Score=35.64 Aligned_cols=29 Identities=31% Similarity=0.307 Sum_probs=16.5
Q ss_pred HHHHHHhhhhHHHHhhHHHHHHHHHHHHH
Q 003069 81 EASRLQTVNRKLSAMNKLLMEENDRLQKQ 109 (851)
Q Consensus 81 ~~~~l~~~n~kl~~en~~l~ee~~~l~~e 109 (851)
+...+++||++|++||..|+.+.++++.+
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENE 61 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666655555443
No 195
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=28.53 E-value=4.6e+02 Score=24.01 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=28.9
Q ss_pred eeeEEeeChhhHHHHhcCccchhhcCCcceeeeecc
Q 003069 217 ACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIP 252 (851)
Q Consensus 217 ~~glV~~~~~~LVe~lmD~~~W~~~f~~~~~l~~~~ 252 (851)
.+..|...+.++-+.|.|...|.+-+|.+..+....
T Consensus 6 ~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~ 41 (139)
T PF10604_consen 6 VSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLS 41 (139)
T ss_dssp EEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEE
T ss_pred EEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEcc
Confidence 345788899999999999999999899887666555
No 196
>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a D
Probab=27.72 E-value=1.2e+02 Score=20.49 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=28.2
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhh
Q 003069 21 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWF 69 (851)
Q Consensus 21 r~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWF 69 (851)
+..++.++...+...|.... ...++++++ |++...|..|.
T Consensus 3 ~~~~~~~~~~~i~~~~~~~~-----s~~~ia~~~----~is~~tv~~~~ 42 (42)
T cd00569 3 PPKLTPEQIEEARRLLAAGE-----SVAEIARRL----GVSRSTLYRYL 42 (42)
T ss_pred CCcCCHHHHHHHHHHHHcCC-----CHHHHHHHH----CCCHHHHHHhC
Confidence 34567777777777776432 466788888 99998887773
No 197
>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms]
Probab=27.26 E-value=4.4e+02 Score=23.36 Aligned_cols=78 Identities=14% Similarity=-0.012 Sum_probs=49.4
Q ss_pred hcCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHH--HHHHHHHHHHhCcccCCCeeEEcC
Q 003069 739 WHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKI--LCTEFAKIMQQGFAYLPGGMCVSS 816 (851)
Q Consensus 739 ~~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~e--r~~lL~~v~~qG~~~~y~GvRiss 816 (851)
...+..++..+. +-.+.|.|+++.++++++-.+....+............ ...........+.........+.+
T Consensus 119 ~~~~~~~~~~d~----~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (232)
T COG2202 119 EASPDGIWVLDE----DGRILYANPAAEELLGYSPEEELGRGLSDLIHPEDEERRELELARALAEGRGGPLEIEYRVRRK 194 (232)
T ss_pred hhCCceEEEEeC----CCCEEEeCHHHHHHhCCChHHhcCCChhheEecCCCchhhHHHHHHhhccCCCCcceEEEEEec
Confidence 446666666665 46899999999999999988888666554443332221 222222333344445556667778
Q ss_pred CCCe
Q 003069 817 MGRA 820 (851)
Q Consensus 817 ~Grr 820 (851)
.|++
T Consensus 195 ~g~~ 198 (232)
T COG2202 195 DGER 198 (232)
T ss_pred CCCE
Confidence 8887
No 198
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=27.16 E-value=1.4e+02 Score=30.61 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=25.8
Q ss_pred HHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003069 80 KEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHS 126 (851)
Q Consensus 80 q~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~ 126 (851)
+++..++.++.+|+.+++.|.++++++.++.+.+..+...|-+-++|
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566666666666666655555555555544444443
No 199
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=26.96 E-value=1.9e+02 Score=33.10 Aligned_cols=60 Identities=32% Similarity=0.377 Sum_probs=35.8
Q ss_pred hhhhhhHHHHHHH--HHHHHHhhhhHHHHhhHHH---HHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003069 68 WFQNRRCREKQRK--EASRLQTVNRKLSAMNKLL---MEENDRLQKQVSHLVYENGYMRQQLHSA 127 (851)
Q Consensus 68 WFQNRRak~Kkrq--~~~~l~~~n~kl~~en~~l---~ee~~~l~~e~~~L~~EN~~Lk~el~~~ 127 (851)
||=-=|-|+|+-+ ....++.+-.|+...++-+ +|..++-+.+.++|+..|+.|+.||-++
T Consensus 54 wff~i~~re~qlk~aa~~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~ 118 (401)
T PF06785_consen 54 WFFAIGRREKQLKTAAGQLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHV 118 (401)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 7755555555422 3334555555555555443 4555556677778888888888887654
No 200
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=26.27 E-value=1.1e+02 Score=28.43 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=13.9
Q ss_pred HHHHHHHhHHHHHhhccCCC
Q 003069 110 VSHLVYENGYMRQQLHSAPA 129 (851)
Q Consensus 110 ~~~L~~EN~~Lk~el~~~~~ 129 (851)
+-+...||-+|++|+.+...
T Consensus 46 vtr~A~EN~rL~ee~rrl~~ 65 (86)
T PF12711_consen 46 VTRFAMENIRLREELRRLQS 65 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34467888888888876543
No 201
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=25.94 E-value=3.1e+02 Score=31.76 Aligned_cols=91 Identities=8% Similarity=0.060 Sum_probs=55.0
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHH---HHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeEEcC
Q 003069 740 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLV---ALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSS 816 (851)
Q Consensus 740 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~---el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss 816 (851)
..+++|+.-+.+ =..+|.|++|.++|+++-. +..+-+...- .....+.++.+.|-... ...+..
T Consensus 229 ~~~~gIi~~D~~----g~I~~~N~~a~~llg~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~~~~~ 295 (542)
T PRK11086 229 SIKEGVIAVDDR----GEVTLINDEAKRLFNYKKGLEDDPLGTDVESW-------MPVSRLKEVLRTGTPRR--DEEINI 295 (542)
T ss_pred HhcCcEEEECCC----CeEEEEhHHHHHHhCCCcCCcccccCCcHHHh-------CCchhHHHHHhcCCCcc--ceEEEE
Confidence 468888887765 5789999999999966521 2222111111 11234566666664432 234455
Q ss_pred CCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 817 MGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 817 ~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
.|+.+.+... .+.| +|...|.-.+|.+
T Consensus 296 ~g~~~~~~~~---pi~~-~g~~~g~v~~~rD 322 (542)
T PRK11086 296 NGRLLLTNTV---PVRV-NGEIIGAIATFRD 322 (542)
T ss_pred CCEEEEEEEE---EEeE-CCEEEEEEEEEEE
Confidence 6777776543 3445 7888888887754
No 202
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=25.87 E-value=1.7e+02 Score=30.52 Aligned_cols=43 Identities=23% Similarity=0.290 Sum_probs=24.4
Q ss_pred HHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 83 SRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 83 ~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
..+.+.|.-|+...+..+.+|+.|..++++|..+-.++++++.
T Consensus 77 ~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 77 EELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556555555555666666666665555555555554
No 203
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=25.77 E-value=1.5e+02 Score=32.88 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhHHHHHhhccCCC
Q 003069 107 QKQVSHLVYENGYMRQQLHSAPA 129 (851)
Q Consensus 107 ~~e~~~L~~EN~~Lk~el~~~~~ 129 (851)
.++++.|..|..++|.||+|...
T Consensus 108 Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 108 KKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677778888888887543
No 204
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=25.71 E-value=1.5e+02 Score=30.91 Aligned_cols=30 Identities=20% Similarity=0.030 Sum_probs=15.4
Q ss_pred HHhhhhHHHHhhHHHHHHHHHHHHHHHHHH
Q 003069 85 LQTVNRKLSAMNKLLMEENDRLQKQVSHLV 114 (851)
Q Consensus 85 l~~~n~kl~~en~~l~ee~~~l~~e~~~L~ 114 (851)
.+++-..|+.+.+.+..+.++++++.++|.
T Consensus 104 ~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 104 RKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555554
No 205
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=25.71 E-value=87 Score=32.33 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHhHHHHHhh
Q 003069 104 DRLQKQVSHLVYENGYMRQQL 124 (851)
Q Consensus 104 ~~l~~e~~~L~~EN~~Lk~el 124 (851)
+.|..++|+|+.|...||+|+
T Consensus 27 E~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 27 ENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555554
No 206
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=25.52 E-value=1.3e+02 Score=28.73 Aligned_cols=37 Identities=30% Similarity=0.333 Sum_probs=21.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 003069 92 LSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAP 128 (851)
Q Consensus 92 l~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~~~ 128 (851)
+...-..+-+++..++.++..|..||++|+-|.+.+.
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr 49 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHLR 49 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666666666666666666665443
No 207
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=24.88 E-value=59 Score=26.48 Aligned_cols=37 Identities=32% Similarity=0.401 Sum_probs=13.4
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003069 88 VNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (851)
Q Consensus 88 ~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el 124 (851)
.|..+...|..+.-....++++..+|..||..||++.
T Consensus 8 qn~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 8 QNRELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 4666777788888888899999999999999999874
No 208
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=24.80 E-value=2.3e+02 Score=24.96 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=12.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhH
Q 003069 91 KLSAMNKLLMEENDRLQKQVSHLVYENG 118 (851)
Q Consensus 91 kl~~en~~l~ee~~~l~~e~~~L~~EN~ 118 (851)
.|+.+|..++++...+..+-.+|...|.
T Consensus 18 ~L~~EN~~Lr~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 18 RLKSENRLLRAQEKTWREERAQLLEKNE 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 209
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=24.33 E-value=5.5e+02 Score=23.42 Aligned_cols=37 Identities=11% Similarity=-0.044 Sum_probs=29.1
Q ss_pred eeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCC
Q 003069 218 CGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTG 254 (851)
Q Consensus 218 ~glV~~~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g 254 (851)
+..|...+.++-++|.|.++|.+-.|.+..+...+.+
T Consensus 4 ~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~ 40 (140)
T cd08865 4 SIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDG 40 (140)
T ss_pred EEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCC
Confidence 4567778999999999999999988887666655443
No 210
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.02 E-value=1.5e+02 Score=35.20 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=11.8
Q ss_pred HHHHHhhhhHHHHhhHHHHHH
Q 003069 82 ASRLQTVNRKLSAMNKLLMEE 102 (851)
Q Consensus 82 ~~~l~~~n~kl~~en~~l~ee 102 (851)
...+..+|++|++||+.|++.
T Consensus 75 ~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 75 LAKLISENEALKAENERLQKR 95 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334555566666666666553
No 211
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=23.96 E-value=1.4e+02 Score=26.38 Aligned_cols=18 Identities=11% Similarity=0.110 Sum_probs=7.3
Q ss_pred HHHHHHHHHhHHHHHhhc
Q 003069 108 KQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 108 ~e~~~L~~EN~~Lk~el~ 125 (851)
.+.++++.||..|+.|+.
T Consensus 38 ~~~~~l~~en~~L~~ei~ 55 (85)
T TIGR02209 38 LEIDKLQKEWRDLQLEVA 55 (85)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444433
No 212
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=23.67 E-value=1.3e+02 Score=24.04 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=30.3
Q ss_pred cCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhh
Q 003069 23 RYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQ 70 (851)
Q Consensus 23 r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQ 70 (851)
.+++.+.+.|...|.+. ..-.++|..+ |++...|+.+..
T Consensus 4 ~L~~~er~vi~~~y~~~-----~t~~eIa~~l----g~s~~~V~~~~~ 42 (50)
T PF04545_consen 4 QLPPREREVIRLRYFEG-----LTLEEIAERL----GISRSTVRRILK 42 (50)
T ss_dssp TS-HHHHHHHHHHHTST------SHHHHHHHH----TSCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhcCC-----CCHHHHHHHH----CCcHHHHHHHHH
Confidence 57899999999999444 3577889999 999999887653
No 213
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=23.59 E-value=87 Score=24.85 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=20.7
Q ss_pred CcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhh
Q 003069 20 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWF 69 (851)
Q Consensus 20 kr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWF 69 (851)
+++.+|.+|...++..++.. ....++|+.+ |.++.-|.-+.
T Consensus 1 ~~~~Lt~~eR~~I~~l~~~G-----~s~~~IA~~l----g~s~sTV~rel 41 (44)
T PF13936_consen 1 KYKHLTPEERNQIEALLEQG-----MSIREIAKRL----GRSRSTVSREL 41 (44)
T ss_dssp -----------HHHHHHCS--------HHHHHHHT----T--HHHHHHHH
T ss_pred CccchhhhHHHHHHHHHHcC-----CCHHHHHHHH----CcCcHHHHHHH
Confidence 35689999999999998755 4677899999 99998887654
No 214
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=23.53 E-value=3.9e+02 Score=33.62 Aligned_cols=96 Identities=18% Similarity=0.280 Sum_probs=54.2
Q ss_pred cCChHHHHHHHhh---hccccccccccchhhhhhccCCCCCCCCCCCCCCCcceEecccccCCCCceEEEEEecCCCCCc
Q 003069 469 NVPPALLVRFLRE---HRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSP 545 (851)
Q Consensus 469 pvpp~~vf~FLrd---~R~eWd~~~~~~~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~ 545 (851)
+.+|+.||++|-+ .|.|||.. +. + | +.+-+| +...+|.--++...-.
T Consensus 236 ~aspE~Ifd~Vm~~~~~R~eWD~~----~~-----~----------~-----~vIE~I----D~htdI~Y~~~~~~~~-- 285 (719)
T PLN00188 236 EATCEEIFELVMSMDGTRFEWDCS----FQ-----Y----------G-----SLVEEV----DGHTAILYHRLQLDWF-- 285 (719)
T ss_pred cCCHHHHHHHHhccCcccccchhc----cc-----c----------e-----EEEEEe----cCCeEEEEEEeccccc--
Confidence 7899999999974 89999963 11 1 2 333333 3333444334321100
Q ss_pred cccccccceEEEeeccCcCCCCCCceeEEE-EeeccCCC----CCCC--CcccCceEEecC
Q 003069 546 EDVALARDMYLLQLCSGIDENTVGACAQLV-FAPIDESF----ADDA--PLLASGFRVIPL 599 (851)
Q Consensus 546 ~~~~~~~~~liLQe~~~~De~~~Gs~s~vV-yAPvD~~d----s~~v--~LLPSGF~I~P~ 599 (851)
-.-+-+||-.++.-- --+ ..| +|++ |-+|.-.. +.+| -+-|+||.|.|+
T Consensus 286 ~~~ispRDFV~~Ryw-rr~--eDG--sYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL 341 (719)
T PLN00188 286 PMFVWPRDLCYVRYW-RRN--DDG--SYVVLFRSREHENCGPQPGFVRAHLESGGFNISPL 341 (719)
T ss_pred cCccCcceeEEEEEE-EEc--CCC--cEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEEC
Confidence 012445777777652 222 335 4554 55565542 3333 378999999995
No 215
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=23.51 E-value=1.2e+02 Score=27.43 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHh
Q 003069 98 LLMEENDRLQKQVSHLVYENGYMRQQ 123 (851)
Q Consensus 98 ~l~ee~~~l~~e~~~L~~EN~~Lk~e 123 (851)
.+.++|.+|+.+++.|..|.+.++.+
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666666666666666665
No 216
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=23.38 E-value=1.8e+02 Score=30.72 Aligned_cols=38 Identities=29% Similarity=0.333 Sum_probs=17.5
Q ss_pred hhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 88 VNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 88 ~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
.+.+|.+.++.+..++..+..+++.|..||.+|..+.+
T Consensus 82 ~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~ 119 (193)
T PF14662_consen 82 ENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERD 119 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 34444444444444444444444445555555544444
No 217
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=23.35 E-value=2.5e+02 Score=33.02 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=34.7
Q ss_pred HHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003069 82 ASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHS 126 (851)
Q Consensus 82 ~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~ 126 (851)
.+.+..++..++++.+.++......+-++++|+.||..|.++.-+
T Consensus 29 ~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 29 QSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677788888888888888888888888888888887765
No 218
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=22.49 E-value=3.1e+02 Score=24.28 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=18.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 91 KLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 91 kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
.....++.+..|.+....+++....+|..|++|++
T Consensus 23 ~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e 57 (69)
T PF14197_consen 23 VHEIENKRLRRERDSAERQLGDAYEENNKLKEENE 57 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555555555666666554
No 219
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.47 E-value=2.2e+02 Score=29.34 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=21.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003069 93 SAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHS 126 (851)
Q Consensus 93 ~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~ 126 (851)
+.+++...+|.+++++++++...|...||.|.+.
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666667777776666666677766554
No 220
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=22.27 E-value=2.6e+02 Score=26.82 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=20.7
Q ss_pred hhhhHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003069 70 QNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVY 115 (851)
Q Consensus 70 QNRRak~Kkrq~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~ 115 (851)
|||-++.-+++... --+.|.+...+.+.+.++.+.+..+..+...
T Consensus 57 QNRq~~~dr~ra~~-D~~inl~ae~ei~~l~~~l~~l~~~~~~~~~ 101 (108)
T PF06210_consen 57 QNRQAARDRLRAEL-DYQINLKAEQEIERLHRKLDALREKLGELLE 101 (108)
T ss_pred hhHhHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 77754332222221 2223445555555566665555554444333
No 221
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=21.82 E-value=30 Score=36.98 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=0.0
Q ss_pred HHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 003069 85 LQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYM 120 (851)
Q Consensus 85 l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~L 120 (851)
.+.....|+.--+.+..+|++|.++.++|+.||++|
T Consensus 127 Q~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 127 QATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677777788888888888888899999888
No 222
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=21.47 E-value=1.6e+02 Score=28.43 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=22.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003069 92 LSAMNKLLMEENDRLQKQVSHLVYENGYMRQ 122 (851)
Q Consensus 92 l~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~ 122 (851)
.+.|-+.+++.+.+|.....+|+.||.-||.
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677777777777777888888887774
No 223
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=21.45 E-value=2.1e+02 Score=26.56 Aligned_cols=33 Identities=27% Similarity=0.247 Sum_probs=18.5
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003069 89 NRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHS 126 (851)
Q Consensus 89 n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~ 126 (851)
|++|.++|+.++.|..--+ -..+|...|+..+.
T Consensus 32 ~~kL~~en~qlk~Ek~~~~-----~qvkn~~vrqknee 64 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAE-----TQVKNAKVRQKNEE 64 (87)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHH
Confidence 5566666666665543333 33556666666553
No 224
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.96 E-value=6.6e+02 Score=23.54 Aligned_cols=38 Identities=29% Similarity=0.352 Sum_probs=28.0
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhh
Q 003069 19 TKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRR 73 (851)
Q Consensus 19 rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRR 73 (851)
..+..|+.+++..|.. ....+++ |++-++|+-.+....
T Consensus 34 ~gyR~Y~~~~l~~l~~-------------I~~lr~~----G~sL~eI~~~l~~~~ 71 (113)
T cd01109 34 NGIRDFTEEDLEWLEF-------------IKCLRNT----GMSIKDIKEYAELRR 71 (113)
T ss_pred CCCccCCHHHHHHHHH-------------HHHHHHc----CCCHHHHHHHHHHHc
Confidence 3456799999988843 3345678 999999999887543
No 225
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.86 E-value=2.4e+02 Score=29.08 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=24.6
Q ss_pred hhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 87 TVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 87 ~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
.++++...+.+.++++.++.+.+.+.|+.+-+.|.+|++
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~eyd 192 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEYD 192 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 345566666666666666666666666666666666653
No 226
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=20.14 E-value=1.9e+02 Score=33.05 Aligned_cols=39 Identities=21% Similarity=0.046 Sum_probs=21.9
Q ss_pred HHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 83 SRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 83 ~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
..++.+|..|+++|..+++++.++ +.++.||..|++.+.
T Consensus 60 ~~L~~EN~~Lk~Ena~L~~~l~~~----e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 60 LVLETENFLLKERIALLEERLKSY----EEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhc
Confidence 344555555665655555554432 335577887776543
No 227
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=20.09 E-value=2e+02 Score=27.78 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003069 95 MNKLLMEENDRLQKQVSHLVYENGYMRQQLHS 126 (851)
Q Consensus 95 en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~ 126 (851)
.-..+.+++..++.++..|..||+.|+-|.+.
T Consensus 16 ~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~ 47 (110)
T PRK13169 16 NLGVLLKELGALKKQLAELLEENTALRLENDK 47 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555443
Done!