Query 003069
Match_columns 851
No_of_seqs 386 out of 1590
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 12:10:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003069.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003069hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.8 4E-19 1.4E-23 183.2 16.7 198 163-378 21-229 (231)
2 2cue_A Paired box protein PAX6 99.6 2.6E-15 8.8E-20 131.8 9.1 64 15-82 5-68 (80)
3 3a01_A Homeodomain-containing 99.6 1.6E-15 5.5E-20 137.1 7.8 63 16-82 16-78 (93)
4 2h1k_A IPF-1, pancreatic and d 99.6 1.2E-15 3.9E-20 128.1 6.2 59 17-79 3-61 (63)
5 1ig7_A Homeotic protein MSX-1; 99.6 2E-15 7E-20 124.3 7.0 57 18-78 1-57 (58)
6 2e1o_A Homeobox protein PRH; D 99.6 2.7E-15 9.3E-20 128.4 7.5 61 16-80 6-66 (70)
7 1nk2_P Homeobox protein VND; h 99.6 3.6E-15 1.2E-19 130.0 8.4 63 16-82 8-70 (77)
8 2vi6_A Homeobox protein nanog; 99.6 7.5E-16 2.6E-20 128.8 3.7 59 17-79 3-61 (62)
9 2hdd_A Protein (engrailed home 99.6 1.9E-15 6.4E-20 125.9 5.9 58 17-78 3-60 (61)
10 2dmq_A LIM/homeobox protein LH 99.6 4E-15 1.4E-19 130.3 8.2 63 15-81 5-67 (80)
11 2dmu_A Homeobox protein goosec 99.6 3.1E-15 1E-19 128.0 7.1 62 15-80 5-66 (70)
12 1ahd_P Antennapedia protein mu 99.6 1.9E-15 6.4E-20 128.9 5.6 60 17-80 2-61 (68)
13 2cra_A Homeobox protein HOX-B1 99.6 2E-15 6.9E-20 129.2 5.7 60 16-79 6-65 (70)
14 2dmt_A Homeobox protein BARH-l 99.6 3E-15 1E-19 131.4 6.8 61 15-79 15-75 (80)
15 2dms_A Homeobox protein OTX2; 99.6 3.4E-15 1.2E-19 131.0 6.9 62 15-80 5-66 (80)
16 2da2_A Alpha-fetoprotein enhan 99.6 3.4E-15 1.2E-19 127.6 6.5 62 15-80 5-66 (70)
17 2da3_A Alpha-fetoprotein enhan 99.5 2.2E-15 7.7E-20 131.7 4.8 61 16-80 16-76 (80)
18 1puf_A HOX-1.7, homeobox prote 99.5 7E-15 2.4E-19 128.2 7.8 62 16-81 12-73 (77)
19 1zq3_P PRD-4, homeotic bicoid 99.5 6.5E-15 2.2E-19 125.4 7.4 61 17-81 2-62 (68)
20 2djn_A Homeobox protein DLX-5; 99.5 3.3E-15 1.1E-19 127.9 5.6 61 15-79 5-65 (70)
21 3a02_A Homeobox protein arista 99.5 2.8E-15 9.6E-20 124.5 5.0 58 19-80 1-58 (60)
22 1ftt_A TTF-1 HD, thyroid trans 99.5 5.1E-15 1.7E-19 126.1 6.7 60 17-80 2-61 (68)
23 1jgg_A Segmentation protein EV 99.5 4.8E-15 1.7E-19 123.0 6.3 58 18-79 2-59 (60)
24 1yz8_P Pituitary homeobox 2; D 99.5 2.7E-15 9.1E-20 127.7 4.9 61 17-81 3-63 (68)
25 1b8i_A Ultrabithorax, protein 99.5 3.3E-15 1.1E-19 131.6 5.5 62 15-80 18-79 (81)
26 2r5y_A Homeotic protein sex co 99.5 4.3E-15 1.5E-19 132.7 6.2 61 15-79 26-86 (88)
27 1uhs_A HOP, homeodomain only p 99.5 6.8E-15 2.3E-19 126.6 7.2 59 18-80 2-61 (72)
28 2da1_A Alpha-fetoprotein enhan 99.5 4.4E-15 1.5E-19 126.9 5.9 61 15-79 5-65 (70)
29 2hi3_A Homeodomain-only protei 99.5 7.9E-15 2.7E-19 126.6 7.3 59 18-80 3-62 (73)
30 1fjl_A Paired protein; DNA-bin 99.5 8.3E-15 2.9E-19 128.8 7.6 62 16-81 17-78 (81)
31 3rkq_A Homeobox protein NKX-2. 99.5 5.9E-15 2E-19 121.0 6.0 57 17-77 2-58 (58)
32 3a03_A T-cell leukemia homeobo 99.5 6E-15 2.1E-19 121.0 6.0 54 22-79 2-55 (56)
33 1wh5_A ZF-HD homeobox family p 99.5 4E-15 1.4E-19 131.0 4.7 59 16-78 16-78 (80)
34 2da4_A Hypothetical protein DK 99.5 5.4E-15 1.8E-19 129.7 5.4 62 15-80 6-71 (80)
35 2l7z_A Homeobox protein HOX-A1 99.5 7.1E-15 2.4E-19 127.0 5.9 59 17-79 7-65 (73)
36 2da5_A Zinc fingers and homeob 99.5 7.1E-15 2.4E-19 127.7 5.9 59 18-80 8-66 (75)
37 2ecc_A Homeobox and leucine zi 99.5 1.3E-14 4.3E-19 126.7 7.3 57 19-79 5-61 (76)
38 1bw5_A ISL-1HD, insulin gene e 99.5 5.7E-15 1.9E-19 124.9 4.8 59 17-79 3-61 (66)
39 2k40_A Homeobox expressed in E 99.5 1.1E-14 3.8E-19 123.5 6.5 59 18-80 2-60 (67)
40 2ecb_A Zinc fingers and homeob 99.5 8.4E-15 2.9E-19 131.6 5.8 60 18-81 12-71 (89)
41 2kt0_A Nanog, homeobox protein 99.5 9E-15 3.1E-19 129.3 5.7 61 16-80 21-81 (84)
42 1akh_A Protein (mating-type pr 99.5 6.9E-15 2.3E-19 122.3 4.7 58 16-77 4-61 (61)
43 2m0c_A Homeobox protein arista 99.5 1.7E-14 5.7E-19 124.6 6.4 62 15-80 7-68 (75)
44 1b72_A Protein (homeobox prote 99.5 2.1E-14 7.3E-19 130.5 6.8 61 16-80 33-93 (97)
45 2ly9_A Zinc fingers and homeob 99.5 1.4E-14 4.6E-19 125.2 5.1 59 18-80 7-65 (74)
46 1wh7_A ZF-HD homeobox family p 99.5 9E-15 3.1E-19 128.9 3.7 58 16-78 16-78 (80)
47 2cuf_A FLJ21616 protein; homeo 99.5 3.4E-14 1.2E-18 128.7 7.1 63 15-81 5-82 (95)
48 1k61_A Mating-type protein alp 99.5 2.8E-14 9.6E-19 118.3 5.9 55 20-78 1-58 (60)
49 2dn0_A Zinc fingers and homeob 99.5 1.8E-14 6.1E-19 125.3 4.8 59 18-80 9-67 (76)
50 3nar_A ZHX1, zinc fingers and 99.5 2.1E-14 7.3E-19 130.3 4.9 60 17-80 25-84 (96)
51 1x2n_A Homeobox protein pknox1 99.5 5.8E-14 2E-18 121.0 7.2 60 16-79 6-68 (73)
52 2cqx_A LAG1 longevity assuranc 99.5 1.9E-14 6.4E-19 124.3 3.6 58 17-78 8-66 (72)
53 1puf_B PRE-B-cell leukemia tra 99.5 6.3E-14 2.2E-18 120.7 6.9 59 18-80 2-63 (73)
54 1b72_B Protein (PBX1); homeodo 99.5 6.5E-14 2.2E-18 124.5 6.8 59 18-80 2-63 (87)
55 1du6_A PBX1, homeobox protein 99.4 2.7E-14 9.4E-19 119.9 3.8 58 17-78 3-63 (64)
56 2dmp_A Zinc fingers and homeob 99.4 1.1E-13 3.8E-18 124.1 6.8 59 18-80 14-72 (89)
57 3nau_A Zinc fingers and homeob 99.4 1E-13 3.5E-18 117.4 5.7 53 24-80 11-63 (66)
58 2l9r_A Homeobox protein NKX-3. 99.4 5.1E-14 1.8E-18 120.8 3.6 55 22-80 9-63 (69)
59 1le8_B Mating-type protein alp 99.4 1.2E-13 4.2E-18 122.1 5.6 59 18-80 3-64 (83)
60 1mnm_C Protein (MAT alpha-2 tr 99.4 1.5E-13 5.2E-18 122.4 6.1 57 17-77 27-86 (87)
61 2dmn_A Homeobox protein TGIF2L 99.4 2.8E-13 9.6E-18 119.9 7.2 62 15-80 5-69 (83)
62 1au7_A Protein PIT-1, GHF-1; c 99.4 9E-14 3.1E-18 135.5 4.0 60 16-79 86-145 (146)
63 1lfb_A Liver transcription fac 99.4 8.6E-14 2.9E-18 127.4 3.4 62 16-81 8-90 (99)
64 2e19_A Transcription factor 8; 99.4 1.7E-13 5.7E-18 115.8 4.7 54 21-78 7-60 (64)
65 1wi3_A DNA-binding protein SAT 99.4 3.8E-13 1.3E-17 114.2 6.5 59 15-77 5-64 (71)
66 1x2m_A LAG1 longevity assuranc 99.4 1.4E-13 4.7E-18 116.4 3.3 49 26-78 9-58 (64)
67 2da6_A Hepatocyte nuclear fact 99.4 5.5E-13 1.9E-17 122.3 7.5 67 16-82 5-88 (102)
68 1e3o_C Octamer-binding transcr 99.4 2.4E-13 8E-18 134.4 5.3 60 16-79 100-159 (160)
69 3d1n_I POU domain, class 6, tr 99.4 3.5E-13 1.2E-17 131.8 6.3 59 16-78 92-150 (151)
70 2pso_A STAR-related lipid tran 99.4 1.3E-12 4.5E-17 136.3 10.0 176 169-357 33-210 (237)
71 2xsd_C POU domain, class 3, tr 99.4 3.1E-13 1.1E-17 134.1 4.9 61 16-80 98-158 (164)
72 1em2_A MLN64 protein; beta bar 99.4 5.5E-12 1.9E-16 129.8 14.1 197 164-378 21-226 (229)
73 3l1p_A POU domain, class 5, tr 99.3 5.7E-13 1.9E-17 131.0 6.2 59 16-78 95-153 (155)
74 3p0l_A Steroidogenic acute reg 99.3 1.1E-11 3.9E-16 127.0 14.5 195 165-376 11-213 (221)
75 2d5v_A Hepatocyte nuclear fact 99.3 1E-12 3.5E-17 130.0 3.9 60 16-79 96-155 (164)
76 3k2a_A Homeobox protein MEIS2; 99.3 2.9E-12 9.8E-17 109.1 5.6 53 23-79 4-59 (67)
77 1ic8_A Hepatocyte nuclear fact 99.1 2.1E-11 7.2E-16 124.0 1.3 59 16-78 114-193 (194)
78 2lk2_A Homeobox protein TGIF1; 99.0 2.1E-10 7E-15 102.9 6.5 54 22-79 10-66 (89)
79 2da7_A Zinc finger homeobox pr 99.0 2.2E-10 7.6E-15 97.8 5.1 46 26-75 14-59 (71)
80 1ln1_A PC-TP, phosphatidylchol 99.0 9E-10 3.1E-14 111.5 8.9 150 213-377 52-209 (214)
81 3fo5_A Thioesterase, adipose a 98.9 7.9E-10 2.7E-14 117.1 6.9 128 214-353 89-223 (258)
82 2h8r_A Hepatocyte nuclear fact 98.9 8.1E-10 2.8E-14 113.9 4.7 56 17-76 142-218 (221)
83 1jss_A Stard4, cholesterol-reg 98.9 1.4E-08 4.6E-13 104.5 13.1 190 165-376 25-222 (224)
84 1mh3_A Maltose binding-A1 home 98.8 6.7E-10 2.3E-14 122.3 2.9 55 19-77 367-421 (421)
85 2e3n_A Lipid-transfer protein 98.4 1.1E-06 3.6E-11 91.9 12.6 198 165-376 23-245 (255)
86 3qsz_A STAR-related lipid tran 98.4 5.8E-07 2E-11 89.3 9.8 126 213-351 27-155 (189)
87 2nzz_A Penetratin conjugated G 98.3 1E-07 3.6E-12 72.0 -0.1 20 63-82 1-20 (37)
88 4eet_B Phototropin-2; LOV, blu 97.5 0.00091 3.1E-08 56.6 11.7 106 740-847 5-110 (115)
89 3t50_A Blue-light-activated hi 97.5 0.0008 2.8E-08 59.0 11.6 105 740-847 5-110 (128)
90 3lyx_A Sensory BOX/ggdef domai 97.5 0.0017 5.9E-08 54.6 12.9 111 732-847 6-117 (124)
91 3ue6_A Aureochrome1; PAS/LOV d 97.4 0.0014 4.7E-08 60.2 12.3 112 734-847 36-148 (166)
92 2gj3_A Nitrogen fixation regul 97.3 0.0019 6.5E-08 57.1 11.9 108 733-847 5-115 (120)
93 1n9l_A PHOT-LOV1, putative blu 97.3 0.0015 5.3E-08 57.3 11.2 103 742-847 3-106 (109)
94 4hia_A LOV protein; PAS, HTH, 97.3 0.0015 5.1E-08 61.4 11.0 112 734-847 8-120 (176)
95 3p7n_A Sensor histidine kinase 97.2 0.0019 6.7E-08 65.4 11.4 112 733-847 63-176 (258)
96 3sw1_A Sensory box protein; li 97.1 0.0027 9.2E-08 58.1 10.9 114 732-847 24-138 (162)
97 3luq_A Sensor protein; PAS, hi 97.1 0.0014 4.7E-08 55.6 8.3 109 733-847 3-112 (114)
98 1byw_A Protein (human ERG pota 97.1 0.0049 1.7E-07 50.6 11.4 93 754-847 12-106 (110)
99 2z6d_A Phototropin-2; PAS-fold 97.1 0.0045 1.5E-07 52.3 11.3 111 735-847 8-119 (130)
100 3f1p_A Endothelial PAS domain- 97.1 0.0048 1.6E-07 53.8 11.6 101 741-846 8-109 (117)
101 3d72_A Vivid PAS protein VVD; 97.1 0.0039 1.3E-07 56.5 11.0 106 738-846 31-148 (149)
102 3mqq_A Transcriptional regulat 96.9 0.0026 9E-08 55.9 8.4 105 735-846 5-111 (120)
103 2r78_A Sensor protein; sensory 96.9 0.0066 2.3E-07 53.8 10.5 91 731-826 9-100 (117)
104 1d06_A Nitrogen fixation regul 96.7 0.011 3.7E-07 52.9 11.2 89 735-827 18-111 (130)
105 3kx0_X Uncharacterized protein 96.7 0.0034 1.2E-07 60.5 8.1 111 731-847 35-151 (185)
106 2l0w_A Potassium voltage-gated 96.7 0.019 6.5E-07 49.4 11.9 111 735-847 22-134 (138)
107 3k3c_A Protein RV1364C/MT1410; 96.7 0.0045 1.5E-07 56.8 8.2 110 732-847 16-131 (158)
108 2pr5_A Blue-light photorecepto 96.6 0.017 5.7E-07 51.8 11.3 103 740-846 7-109 (132)
109 2v0u_A NPH1-1, LOV2; kinase, t 96.5 0.021 7.2E-07 49.4 11.3 106 740-847 10-115 (146)
110 2r55_A STAR-related lipid tran 96.5 0.21 7.2E-06 50.7 19.9 149 394-598 21-180 (231)
111 2wkq_A NPH1-1, RAS-related C3 96.4 0.017 6E-07 60.6 11.7 107 739-847 18-124 (332)
112 3f1p_B ARYL hydrocarbon recept 96.4 0.013 4.5E-07 51.4 8.9 102 740-846 10-113 (121)
113 3ewk_A Sensor protein; PAS dom 96.3 0.044 1.5E-06 54.5 13.3 105 738-847 117-227 (227)
114 2vv6_A FIXL, sensor protein FI 96.1 0.036 1.2E-06 48.5 10.4 83 741-827 2-88 (119)
115 3mxq_A Sensor protein; PSI2, M 96.1 0.028 9.7E-07 54.2 10.4 108 734-847 23-143 (152)
116 3ewk_A Sensor protein; PAS dom 96.1 0.02 6.7E-07 57.0 9.5 93 754-847 7-99 (227)
117 3eeh_A Putative light and redo 96.0 0.062 2.1E-06 45.2 11.0 109 733-847 11-123 (125)
118 3olo_A Two-component sensor hi 96.0 0.052 1.8E-06 46.2 10.5 83 735-826 15-98 (118)
119 3fc7_A HTR-like protein, senso 96.0 0.029 9.8E-07 48.5 8.9 104 733-847 19-123 (125)
120 3mjq_A Uncharacterized protein 95.9 0.029 9.9E-07 48.3 8.6 99 740-846 7-105 (126)
121 3nja_A Probable ggdef family p 95.9 0.024 8.1E-07 48.5 7.9 108 735-847 9-119 (125)
122 2kdk_A ARYL hydrocarbon recept 95.8 0.042 1.4E-06 47.7 9.3 99 740-843 11-111 (121)
123 3icy_A Sensor protein; sensory 95.6 0.042 1.4E-06 46.8 8.5 110 732-846 3-115 (118)
124 3b33_A Sensor protein; structu 95.6 0.032 1.1E-06 48.1 7.8 104 735-847 9-113 (115)
125 3bwl_A Sensor protein; structu 94.8 0.1 3.4E-06 45.6 8.6 85 733-824 17-104 (126)
126 1jss_A Stard4, cholesterol-reg 94.5 1.1 3.8E-05 45.4 16.7 128 417-598 42-175 (224)
127 2pso_A STAR-related lipid tran 94.4 1.4 4.8E-05 45.4 17.5 174 416-686 48-227 (237)
128 1v9y_A Heme PAS sensor protein 94.3 0.15 5.2E-06 45.9 8.8 98 735-838 42-144 (167)
129 3p0l_A Steroidogenic acute reg 94.2 1.7 5.8E-05 43.8 17.1 192 397-685 12-213 (221)
130 3mfx_A Sensory BOX/ggdef famil 94.1 0.07 2.4E-06 49.4 6.2 87 735-825 9-103 (129)
131 3h9w_A Diguanylate cyclase wit 94.1 0.22 7.6E-06 42.9 9.0 90 755-846 13-104 (115)
132 1ll8_A PAS kinase; PAS domain, 93.9 0.029 1E-06 48.7 3.0 82 741-825 7-92 (114)
133 4hi4_A Aerotaxis transducer AE 93.9 0.42 1.4E-05 42.3 10.6 96 737-847 10-117 (121)
134 3a0s_A Sensor protein; PAS-fol 93.7 0.69 2.4E-05 36.5 10.7 92 742-846 2-95 (96)
135 1ln1_A PC-TP, phosphatidylchol 93.4 2.1 7E-05 42.5 15.9 67 405-488 13-83 (214)
136 3fo5_A Thioesterase, adipose a 93.3 0.99 3.4E-05 47.5 13.9 149 390-598 43-200 (258)
137 3qsz_A STAR-related lipid tran 93.3 3.2 0.00011 40.5 16.8 54 418-489 3-58 (189)
138 3fg8_A Uncharacterized protein 92.2 0.26 8.9E-06 43.3 6.6 62 740-805 20-81 (118)
139 2d4r_A Hypothetical protein TT 91.5 1.3 4.3E-05 39.8 10.6 141 216-379 5-146 (147)
140 1em2_A MLN64 protein; beta bar 91.3 6.6 0.00022 39.6 16.8 128 417-598 41-177 (229)
141 3vol_A Aerotaxis transducer AE 89.5 1.8 6E-05 43.8 10.6 114 717-847 8-134 (233)
142 1hjb_A Ccaat/enhancer binding 89.3 0.71 2.4E-05 41.1 6.5 47 73-126 29-75 (87)
143 4f3l_A Mclock, circadian locom 89.2 1.5 5.1E-05 47.7 10.4 91 754-845 259-350 (361)
144 2w0n_A Sensor protein DCUS; si 88.2 0.72 2.5E-05 38.7 5.7 97 734-847 16-116 (118)
145 1gu4_A CAAT/enhancer binding p 87.6 1.1 3.8E-05 39.1 6.5 47 72-125 28-74 (78)
146 1ci6_A Transcription factor AT 86.8 1.4 4.9E-05 36.7 6.5 45 73-124 16-60 (63)
147 4eho_A Bacteriophytochrome, PA 86.6 1.1 3.9E-05 52.5 8.0 106 737-848 523-628 (635)
148 2vlg_A Sporulation kinase A; h 86.4 1.7 5.9E-05 39.0 7.4 78 740-825 7-85 (111)
149 2ys9_A Homeobox and leucine zi 86.2 0.52 1.8E-05 40.3 3.5 43 25-71 14-56 (70)
150 2wt7_A Proto-oncogene protein 83.8 2.4 8.2E-05 35.3 6.5 45 73-124 16-60 (63)
151 1t2k_D Cyclic-AMP-dependent tr 83.1 3.1 0.0001 34.3 6.8 34 91-124 26-59 (61)
152 2jhe_A Transcription regulator 83.0 1.4 4.7E-05 41.9 5.4 88 735-837 82-170 (190)
153 1t2k_D Cyclic-AMP-dependent tr 79.7 7.3 0.00025 32.0 7.9 43 73-115 15-57 (61)
154 3mr0_A Sensory box histidine k 78.9 9.3 0.00032 34.2 9.3 107 735-847 11-121 (142)
155 1jnm_A Proto-oncogene C-JUN; B 76.3 3.6 0.00012 34.0 5.1 45 73-124 15-59 (62)
156 2wt7_B Transcription factor MA 75.8 8.5 0.00029 34.5 7.6 63 59-125 17-79 (90)
157 3a0r_A Sensor protein; four he 75.4 5.4 0.00019 41.5 7.5 95 740-847 16-112 (349)
158 1gd2_E Transcription factor PA 74.0 5.3 0.00018 34.1 5.6 52 69-120 14-69 (70)
159 3rty_A Period circadian protei 73.6 14 0.00047 40.2 10.3 81 754-836 162-248 (339)
160 3s9g_A Protein hexim1; cyclin 73.0 8 0.00027 35.0 6.7 41 85-125 49-89 (104)
161 2jee_A YIIU; FTSZ, septum, coi 72.6 7 0.00024 34.3 6.1 42 84-125 24-65 (81)
162 3tfz_A Cyclase; helix-GRIP, BE 70.8 16 0.00053 35.1 9.0 122 216-358 8-130 (172)
163 2jn6_A Protein CGL2762, transp 70.2 3.3 0.00011 36.2 3.6 85 22-130 4-88 (97)
164 2dgc_A Protein (GCN4); basic d 69.8 5.8 0.0002 33.1 4.9 14 111-124 47-60 (63)
165 2qkp_A Uncharacterized protein 69.2 15 0.00051 34.7 8.3 105 733-847 19-129 (151)
166 4f3l_B BMAL1B; BHLH, PAS, circ 68.3 18 0.00061 39.6 9.9 89 755-845 287-378 (387)
167 1ci6_A Transcription factor AT 67.3 18 0.00063 29.9 7.4 31 95-125 24-54 (63)
168 2w6a_A ARF GTPase-activating p 66.3 14 0.00048 30.5 6.2 32 91-122 31-62 (63)
169 2wt7_A Proto-oncogene protein 66.0 24 0.00082 29.1 7.8 29 97-125 26-54 (63)
170 1jnm_A Proto-oncogene C-JUN; B 65.4 12 0.00039 30.9 5.8 35 94-128 22-56 (62)
171 3cax_A Uncharacterized protein 65.3 21 0.00073 38.7 9.7 105 733-848 239-344 (369)
172 2j5u_A MREC protein; bacterial 62.6 5.5 0.00019 41.8 4.1 39 85-127 24-62 (255)
173 1t17_A Conserved hypothetical 61.9 24 0.00083 32.5 8.1 137 216-377 5-144 (148)
174 3p9v_A Uncharacterized protein 61.5 33 0.0011 32.5 9.2 110 216-345 10-119 (161)
175 3m91_A Proteasome-associated A 57.8 15 0.00052 29.5 4.9 37 91-127 13-49 (51)
176 2e3n_A Lipid-transfer protein 54.9 12 0.0004 38.4 5.0 58 416-489 45-105 (255)
177 3a5t_A Transcription factor MA 54.7 4.3 0.00015 37.5 1.4 67 59-129 27-93 (107)
178 3tvq_A Multifunctional cyclase 53.8 98 0.0034 29.9 11.2 38 216-253 6-43 (169)
179 1hjb_A Ccaat/enhancer binding 52.8 58 0.002 28.8 8.4 39 90-128 32-70 (87)
180 1gu4_A CAAT/enhancer binding p 51.3 56 0.0019 28.3 7.9 36 93-128 35-70 (78)
181 1dh3_A Transcription factor CR 50.0 13 0.00043 30.2 3.4 22 105-126 26-47 (55)
182 1go4_E MAD1 (mitotic arrest de 48.3 47 0.0016 30.2 7.2 23 106-128 73-95 (100)
183 1nwz_A PYP, photoactive yellow 48.3 85 0.0029 29.3 9.3 96 739-841 24-120 (125)
184 1t6f_A Geminin; coiled-coil, c 47.3 27 0.00093 26.0 4.4 28 95-122 8-35 (37)
185 2oqq_A Transcription factor HY 47.3 37 0.0013 26.2 5.2 34 92-125 8-41 (42)
186 3he5_B Synzip2; heterodimeric 45.1 36 0.0012 26.4 4.9 33 92-124 15-47 (52)
187 1mzu_A PPR; photoactive yellow 44.9 93 0.0032 29.3 9.0 95 740-841 30-125 (129)
188 2glo_A Brinker CG9653-PA; prot 44.5 21 0.00073 28.3 4.0 46 20-70 2-47 (59)
189 3hnw_A Uncharacterized protein 43.6 60 0.002 31.0 7.6 40 85-124 94-133 (138)
190 1a93_B MAX protein, coiled coi 42.3 32 0.0011 25.5 4.1 27 99-125 5-31 (34)
191 2yy0_A C-MYC-binding protein; 42.1 37 0.0013 27.4 4.9 32 94-125 19-50 (53)
192 3m9b_A Proteasome-associated A 40.7 30 0.001 36.3 5.4 33 89-121 63-95 (251)
193 2oa5_A Hypothetical protein BQ 40.6 19 0.00064 33.3 3.3 24 103-126 10-33 (110)
194 1dip_A Delta-sleep-inducing pe 38.8 26 0.00088 30.2 3.6 33 93-125 14-46 (78)
195 3gpv_A Transcriptional regulat 37.4 1.3E+02 0.0046 28.4 9.0 37 19-72 50-86 (148)
196 3he5_B Synzip2; heterodimeric 36.9 1.1E+02 0.0039 23.6 6.6 39 89-127 5-43 (52)
197 3mq7_A Bone marrow stromal ant 36.6 73 0.0025 29.7 6.5 65 60-126 41-110 (121)
198 2wt7_B Transcription factor MA 36.0 1.2E+02 0.004 27.1 7.6 43 74-116 42-84 (90)
199 4f3l_A Mclock, circadian locom 35.7 48 0.0016 35.7 6.3 65 731-799 84-149 (361)
200 3s9g_A Protein hexim1; cyclin 35.6 2E+02 0.0069 26.1 9.0 46 79-124 50-95 (104)
201 3gdi_A Period circadian protei 35.5 44 0.0015 35.7 5.9 76 755-832 174-251 (309)
202 1hlv_A CENP-B, major centromer 35.2 48 0.0017 29.9 5.4 49 20-75 4-52 (131)
203 1jko_C HIN recombinase, DNA-in 34.4 26 0.00088 25.9 2.8 42 23-73 5-46 (52)
204 4dj3_A Period circadian protei 33.0 1.2E+02 0.0042 32.4 8.8 79 754-834 182-264 (317)
205 4dj2_A Period circadian protei 33.0 1.8E+02 0.0061 31.1 10.2 75 755-831 185-261 (320)
206 1nkp_B MAX protein, MYC proto- 32.7 50 0.0017 28.4 4.7 32 97-128 50-81 (83)
207 1s7o_A Hypothetical UPF0122 pr 32.4 1.1E+02 0.0038 27.7 7.2 48 22-78 21-68 (113)
208 1tc3_C Protein (TC3 transposas 32.1 48 0.0016 23.8 4.0 41 22-71 4-44 (51)
209 3hnw_A Uncharacterized protein 32.0 1.2E+02 0.0042 28.8 7.7 58 69-126 71-128 (138)
210 2dgc_A Protein (GCN4); basic d 31.7 1.4E+02 0.0048 24.7 7.0 32 73-104 23-54 (63)
211 1deb_A APC protein, adenomatou 30.6 38 0.0013 27.1 3.1 22 104-125 6-27 (54)
212 3tl1_A WHIE ORF VI, polyketide 30.4 3.6E+02 0.012 25.5 13.2 111 216-347 6-117 (159)
213 2jee_A YIIU; FTSZ, septum, coi 28.6 1.4E+02 0.0049 26.1 6.8 45 80-124 27-71 (81)
214 1xsv_A Hypothetical UPF0122 pr 28.3 1.7E+02 0.0058 26.3 7.7 48 22-78 24-71 (113)
215 1gd2_E Transcription factor PA 28.2 1.5E+02 0.005 25.2 6.7 19 106-124 41-59 (70)
216 1dh3_A Transcription factor CR 26.3 2.3E+02 0.0078 22.7 7.2 21 104-124 32-52 (55)
217 3m9b_A Proteasome-associated A 26.2 40 0.0014 35.4 3.4 39 91-129 58-96 (251)
218 1wlq_A Geminin; coiled-coil; 2 25.8 1.5E+02 0.005 26.2 6.3 44 79-122 23-66 (83)
219 3a5t_A Transcription factor MA 25.8 4.2 0.00015 37.5 -3.5 49 73-121 51-99 (107)
220 1nlw_A MAD protein, MAX dimeri 25.3 72 0.0025 27.6 4.4 30 97-126 50-79 (80)
221 3m91_A Proteasome-associated A 25.1 2E+02 0.0068 23.0 6.5 36 85-120 14-49 (51)
222 1uii_A Geminin; human, DNA rep 24.9 1.9E+02 0.0064 25.5 6.8 28 95-122 47-74 (83)
223 1uii_A Geminin; human, DNA rep 23.5 2.3E+02 0.0079 24.9 7.1 37 78-114 37-73 (83)
224 3he5_A Synzip1; heterodimeric 22.6 2.5E+02 0.0085 21.5 6.2 40 85-124 8-47 (49)
225 3oja_B Anopheles plasmodium-re 21.9 3.2E+02 0.011 30.9 10.3 29 98-126 548-576 (597)
226 3lph_A Protein REV; helix-loop 21.7 62 0.0021 27.7 3.1 36 30-83 19-54 (72)
227 3oja_B Anopheles plasmodium-re 21.6 1.7E+02 0.0058 33.2 7.9 40 87-126 544-583 (597)
228 2x7l_M HIV REV; nuclear export 21.6 78 0.0027 29.3 4.0 35 30-82 16-50 (115)
229 2pcs_A Conserved protein; stru 21.5 4.6E+02 0.016 23.8 11.4 118 218-357 8-127 (162)
230 2elh_A CG11849-PA, LD40883P; s 21.0 1.2E+02 0.004 25.9 4.9 43 19-70 18-60 (87)
231 3gp4_A Transcriptional regulat 20.8 5.2E+02 0.018 24.1 10.2 36 19-71 36-71 (142)
232 3f08_A Uncharacterized protein 20.5 2.8E+02 0.0095 25.7 7.9 35 217-251 6-40 (146)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.80 E-value=4e-19 Score=183.20 Aligned_cols=198 Identities=19% Similarity=0.246 Sum_probs=160.6
Q ss_pred hhhhHHHHHHHHHHHHHhhcCCCCceEecCCCCCCCCccceeec-cCCCcceeeeeeeEEeeChhhHHHHhcC-----cc
Q 003069 163 PAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAV-SRNCSGVAARACGLVSLDPTKIAEILKD-----CP 236 (851)
Q Consensus 163 ~~~l~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~g~~~~-~~~~~~eASR~~glV~~~~~~LVe~lmD-----~~ 236 (851)
++.+.++|++||+|++++++.+ ..|..... +.| +.++-. ..+..+.+-|..|+|.+.+.+|++.||+ +.
T Consensus 21 ~~~y~~~a~~~~~~~l~~~~~~-~~W~~~~~-~~g---v~v~~~~~~~~~~~~~k~~~~v~~~~~~v~~~l~~~d~~~r~ 95 (231)
T 2r55_A 21 QSMAAQMSEAVAEKMLQYRRDT-AGWKICRE-GNG---VSVSWRPSVEFPGNLYRGEGIVYGTLEEVWDCVKPAVGGLRV 95 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-SSCEEEEC-CSS---EEEEEEECSSSSSEEEEEEEEESSCHHHHHHHHCC--CCSHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC-CCCEEEEe-CCC---EEEEEEccCCCCCcEEEEEEEECCCHHHHHHHHHhhCcchhh
Confidence 6789999999999999999754 68987643 222 222211 1234568899999999999999999977 89
Q ss_pred chhhcCCcceeeeeccCCCccHHHHHHHhhc--ccccccccceeeEEeecceeCCCcEEEEEeecCCCCCCCCCCCCCCc
Q 003069 237 SWFRDCRCLDVLSVIPTGNGGTIELIYMQTY--APTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSF 314 (851)
Q Consensus 237 ~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~--v~SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~ 314 (851)
+|-..|...++|+.+... .. ++| ++. .++++|++|||.++||+++.++|.|+|+.+|++. +..|+...+
T Consensus 96 ~Wd~~~~~~~vle~i~~~--~~--i~~-~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~----~~~P~~~~~ 166 (231)
T 2r55_A 96 KWDENVTGFEIIQSITDT--LC--VSR-TSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEH----PLCPPKPGF 166 (231)
T ss_dssp HHCTTCSEEEEEEECSSS--EE--EEE-EECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCC----TTSCCCTTC
T ss_pred hhccccceeEEEEEcCCC--EE--EEE-EEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEeccC----CCCCCCCCC
Confidence 999999999999988642 12 222 232 3456899999999999999999999999999984 345566789
Q ss_pred cceeecccceEEeecC--CCceEEEEEEeeeccCCCccccchhhhhchHHHHHHHHHHHHH-HHHhh
Q 003069 315 VRAEMLASGFLIRPCE--GGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIRQI 378 (851)
Q Consensus 315 ~r~rrlPSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~aLr-~~e~l 378 (851)
+|++.++|||+|++++ +|.|+|||+.|+|..-+ +| +.++++.+..+...+++.|| +|+.+
T Consensus 167 VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~~ 229 (231)
T 2r55_A 167 VRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRSMTRFYANLQKAVKQF 229 (231)
T ss_dssp EEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred EEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence 9999999999999998 78999999999999876 55 68889999999999999996 88764
No 2
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=2.6e-15 Score=131.84 Aligned_cols=64 Identities=27% Similarity=0.528 Sum_probs=59.3
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHH
Q 003069 15 IMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 82 (851)
Q Consensus 15 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~~ 82 (851)
+..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKI----DLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CCCHHHhhHHHHHHHHHHHHHhhh
Confidence 3457888999999999999999999999999999999999 999999999999999999986543
No 3
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.59 E-value=1.6e-15 Score=137.06 Aligned_cols=63 Identities=27% Similarity=0.410 Sum_probs=58.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 82 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~~ 82 (851)
..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|++...
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGL----KMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHh----CCChhhcccccHhhhhhhhhhhHH
Confidence 457788999999999999999999999999999999999 999999999999999999986543
No 4
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.58 E-value=1.2e-15 Score=128.11 Aligned_cols=59 Identities=32% Similarity=0.443 Sum_probs=55.5
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003069 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (851)
Q Consensus 17 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkr 79 (851)
.+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVML----NLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CcCHHHhhHHHHhhhhhhhhh
Confidence 46788999999999999999999999999999999999 999999999999999999985
No 5
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.58 E-value=2e-15 Score=124.28 Aligned_cols=57 Identities=30% Similarity=0.486 Sum_probs=54.9
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003069 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (851)
Q Consensus 18 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kk 78 (851)
+++|+.||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSL----SLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH----CcCHHHhhhhhhHhhhhhcc
Confidence 4678999999999999999999999999999999999 99999999999999999986
No 6
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=2.7e-15 Score=128.38 Aligned_cols=61 Identities=26% Similarity=0.451 Sum_probs=57.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
..+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+.+
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKML----QLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----CCCHHHhhHhhHhhHhhcCCCC
Confidence 457788999999999999999999999999999999999 9999999999999999999854
No 7
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.57 E-value=3.6e-15 Score=130.00 Aligned_cols=63 Identities=29% Similarity=0.476 Sum_probs=58.3
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 82 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~~ 82 (851)
..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+.+..
T Consensus 8 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 8 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLI----RLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhcchhhhhcc
Confidence 446778899999999999999999999999999999999 999999999999999999985543
No 8
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.57 E-value=7.5e-16 Score=128.76 Aligned_cols=59 Identities=27% Similarity=0.341 Sum_probs=52.9
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003069 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (851)
Q Consensus 17 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkr 79 (851)
.+++|+.||.+|+..||..|..++||+..++.+||..+ ||+++||++||||||+|+|++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSIL----NLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh----CCCHHHhhHHhHHhhcchhhc
Confidence 46788999999999999999999999999999999999 999999999999999999985
No 9
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.57 E-value=1.9e-15 Score=125.94 Aligned_cols=58 Identities=33% Similarity=0.566 Sum_probs=53.1
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003069 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (851)
Q Consensus 17 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kk 78 (851)
.+++|+.||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSEL----GLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CcCHHHHHHHhhhhcccccc
Confidence 36788999999999999999999999999999999999 99999999999999999986
No 10
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=4e-15 Score=130.33 Aligned_cols=63 Identities=16% Similarity=0.339 Sum_probs=58.8
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003069 15 IMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (851)
Q Consensus 15 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~ 81 (851)
+..+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKT----GLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CCCHHHhhHccHHHHHHHHHHHH
Confidence 3457889999999999999999999999999999999999 99999999999999999998643
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3.1e-15 Score=127.97 Aligned_cols=62 Identities=31% Similarity=0.549 Sum_probs=58.0
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 15 IMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 15 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
+..+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKV----HLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CCCHHHeehccccccccccccC
Confidence 3457888999999999999999999999999999999999 9999999999999999999853
No 12
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.56 E-value=1.9e-15 Score=128.87 Aligned_cols=60 Identities=28% Similarity=0.405 Sum_probs=57.3
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 17 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
.+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHH----CcCHhhhhHHhHHHHhHHhHhc
Confidence 57889999999999999999999999999999999999 9999999999999999999854
No 13
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=2e-15 Score=129.21 Aligned_cols=60 Identities=30% Similarity=0.544 Sum_probs=57.1
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkr 79 (851)
..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~ 65 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAAT----SLSERQITIWFQNRRVKEKKS 65 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CCCHHHhhHhhHhHHHHhccc
Confidence 457888999999999999999999999999999999999 999999999999999999974
No 14
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=3e-15 Score=131.40 Aligned_cols=61 Identities=25% Similarity=0.338 Sum_probs=57.3
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003069 15 IMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (851)
Q Consensus 15 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkr 79 (851)
...+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+.
T Consensus 15 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 15 KKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESL----GLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CCCHHHeeeccHHHHHHhhcc
Confidence 3457788999999999999999999999999999999999 999999999999999999984
No 15
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=3.4e-15 Score=130.98 Aligned_cols=62 Identities=23% Similarity=0.515 Sum_probs=58.2
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 15 IMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 15 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
+..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKI----NLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CcCHHHhhhhhHHHhHHhhHHH
Confidence 3457889999999999999999999999999999999999 9999999999999999999854
No 16
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.55 E-value=3.4e-15 Score=127.61 Aligned_cols=62 Identities=24% Similarity=0.378 Sum_probs=58.0
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 15 IMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 15 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
+..+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+++
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLL----NLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHh----CCCHHHhHHhhHhhhHHHhhcc
Confidence 3457888999999999999999999999999999999999 9999999999999999999843
No 17
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.55 E-value=2.2e-15 Score=131.74 Aligned_cols=61 Identities=30% Similarity=0.488 Sum_probs=57.3
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
..+++|++||.+|+..||..|..++||+..+|.+||.+| ||+++||++||||||+|+|+++
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 16 RDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEV----GLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CcCHHHhHHHhHHHHHhHhhhc
Confidence 447778899999999999999999999999999999999 9999999999999999999843
No 18
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.55 E-value=7e-15 Score=128.18 Aligned_cols=62 Identities=31% Similarity=0.420 Sum_probs=57.7
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~ 81 (851)
..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+...
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLL----NLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhhh
Confidence 346788899999999999999999999999999999999 99999999999999999998543
No 19
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.55 E-value=6.5e-15 Score=125.43 Aligned_cols=61 Identities=25% Similarity=0.428 Sum_probs=57.4
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003069 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (851)
Q Consensus 17 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~ 81 (851)
.+++|+.||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKL----ALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CcCHHHhhHhhHHHHHHHHHHhc
Confidence 36788999999999999999999999999999999999 99999999999999999998543
No 20
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=3.3e-15 Score=127.89 Aligned_cols=61 Identities=25% Similarity=0.405 Sum_probs=57.4
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003069 15 IMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (851)
Q Consensus 15 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkr 79 (851)
+..+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASL----GLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHS----SCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHh----CCCHHHHHHHHHHHhhhhccc
Confidence 3457889999999999999999999999999999999999 999999999999999999874
No 21
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.54 E-value=2.8e-15 Score=124.48 Aligned_cols=58 Identities=29% Similarity=0.569 Sum_probs=50.6
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 19 TKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 19 rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
+.|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 1 g~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 1 GSHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKI----GLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ----CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHC---
T ss_pred CCCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----CcCHHHHHHHhhhhhhhhHhhc
Confidence 357899999999999999999999999999999999 9999999999999999999853
No 22
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.54 E-value=5.1e-15 Score=126.07 Aligned_cols=60 Identities=30% Similarity=0.517 Sum_probs=57.2
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 17 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
.+++|++||.+|+..||..|..++||+...+.+||..+ ||+++||++||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMI----HLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh----CCCHHHhHHHhHHHhhhhhhhh
Confidence 56888999999999999999999999999999999999 9999999999999999999854
No 23
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.54 E-value=4.8e-15 Score=123.04 Aligned_cols=58 Identities=33% Similarity=0.506 Sum_probs=55.0
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003069 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (851)
Q Consensus 18 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkr 79 (851)
+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQL----NLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----CcCHHHHHHhhHHHHhHhhcc
Confidence 4678999999999999999999999999999999999 999999999999999999973
No 24
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.54 E-value=2.7e-15 Score=127.74 Aligned_cols=61 Identities=25% Similarity=0.530 Sum_probs=57.7
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003069 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (851)
Q Consensus 17 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~ 81 (851)
.+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+++.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHT----TSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhHHHHHHhh
Confidence 46888999999999999999999999999999999999 99999999999999999998654
No 25
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.54 E-value=3.3e-15 Score=131.62 Aligned_cols=62 Identities=27% Similarity=0.393 Sum_probs=54.2
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 15 IMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 15 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
+..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+.+
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHAL----SLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhhhhhhhc
Confidence 4457889999999999999999999999999999999999 9999999999999999999843
No 26
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.54 E-value=4.3e-15 Score=132.72 Aligned_cols=61 Identities=28% Similarity=0.382 Sum_probs=54.6
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003069 15 IMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (851)
Q Consensus 15 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkr 79 (851)
+..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|++
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CcCHHHhhHHhHHHHHHhHhh
Confidence 3457888999999999999999999999999999999999 999999999999999999984
No 27
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.54 E-value=6.8e-15 Score=126.56 Aligned_cols=59 Identities=22% Similarity=0.345 Sum_probs=55.9
Q ss_pred CCCcccCCHHHHHHHHHhHhc-CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 18 STKYVRYTPEQVEALERVYSE-CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 18 ~rkr~r~T~~Ql~~LE~~F~~-~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
.++|++||.+|+..||..|.. ++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH----CcCHHHhhHHhHHHHHHHhhhc
Confidence 467889999999999999996 9999999999999999 9999999999999999999855
No 28
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.54 E-value=4.4e-15 Score=126.90 Aligned_cols=61 Identities=23% Similarity=0.382 Sum_probs=57.6
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003069 15 IMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (851)
Q Consensus 15 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkr 79 (851)
...+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|++
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKS----GLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHh----CCCHHHHHHHhhhhhHHHhhh
Confidence 3457889999999999999999999999999999999999 999999999999999999984
No 29
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.54 E-value=7.9e-15 Score=126.59 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=55.9
Q ss_pred CCCcccCCHHHHHHHHHhHh-cCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 18 STKYVRYTPEQVEALERVYS-ECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 18 ~rkr~r~T~~Ql~~LE~~F~-~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
.++|++||.+|+..||..|. .++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~----~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhc
Confidence 57789999999999999999 49999999999999999 9999999999999999999855
No 30
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.54 E-value=8.3e-15 Score=128.80 Aligned_cols=62 Identities=27% Similarity=0.578 Sum_probs=58.0
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~ 81 (851)
..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++.
T Consensus 17 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 17 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRT----NLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhhhhhhhcc
Confidence 446788899999999999999999999999999999999 99999999999999999998643
No 31
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.53 E-value=5.9e-15 Score=121.03 Aligned_cols=57 Identities=33% Similarity=0.503 Sum_probs=54.2
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHH
Q 003069 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 77 (851)
Q Consensus 17 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~K 77 (851)
.+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVL----KLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CcCHHHHHHhhHHhhccCC
Confidence 35778999999999999999999999999999999999 9999999999999999975
No 32
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.53 E-value=6e-15 Score=121.00 Aligned_cols=54 Identities=30% Similarity=0.481 Sum_probs=50.9
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003069 22 VRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (851)
Q Consensus 22 ~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkr 79 (851)
+.||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKAL----RMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHh----CcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999 999999999999999999984
No 33
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.53 E-value=4e-15 Score=131.02 Aligned_cols=59 Identities=17% Similarity=0.320 Sum_probs=55.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhc----CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSE----CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~----~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kk 78 (851)
..+|+|+.||.+|+..||..|+. ++||+..+|.+||.+| ||+++||+|||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~l----gL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQET----GVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHS----CCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHh----CCCcccccCCccccCcCCCC
Confidence 45778899999999999999999 9999999999999999 99999999999999999874
No 34
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=5.4e-15 Score=129.73 Aligned_cols=62 Identities=11% Similarity=0.249 Sum_probs=57.9
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcC----CCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 15 IMDSTKYVRYTPEQVEALERVYSEC----PKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 15 ~~~~rkr~r~T~~Ql~~LE~~F~~~----~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
+..+++|+.||.+|+..||..|..+ +||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~l----gL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATEL----NVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHh----CCCHHHhhHhHHHHHHHHhhcc
Confidence 3457888999999999999999999 999999999999999 9999999999999999999854
No 35
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.52 E-value=7.1e-15 Score=126.96 Aligned_cols=59 Identities=34% Similarity=0.567 Sum_probs=56.5
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003069 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (851)
Q Consensus 17 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkr 79 (851)
.+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATT----NLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHH----TSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHH----CCCHHHHHHHHHHHhHHHHHH
Confidence 46888999999999999999999999999999999999 999999999999999999984
No 36
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=7.1e-15 Score=127.66 Aligned_cols=59 Identities=31% Similarity=0.556 Sum_probs=55.9
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 18 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
.++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 8 ~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 8 PTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSET----KMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CCCHHHhhHhhHHHHHHHHHhh
Confidence 4677889999999999999999999999999999999 9999999999999999999854
No 37
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=1.3e-14 Score=126.67 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=54.2
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003069 19 TKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (851)
Q Consensus 19 rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkr 79 (851)
.++.+||.+|+..||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~t----gLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQIT----GLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH----CcCHHHhhHHhHhhHHHHHHH
Confidence 556789999999999999999999999999999999 999999999999999999974
No 38
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.52 E-value=5.7e-15 Score=124.91 Aligned_cols=59 Identities=32% Similarity=0.742 Sum_probs=56.3
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003069 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (851)
Q Consensus 17 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkr 79 (851)
.+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMT----GLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH----CcCHHHHHHHhHHHHHHHhHH
Confidence 46788999999999999999999999999999999999 999999999999999999874
No 39
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=123.48 Aligned_cols=59 Identities=31% Similarity=0.495 Sum_probs=56.3
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 18 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
+++|++||++|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|++.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKL----NLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CcCHHHhhHhhHhHHHHHhHhc
Confidence 5788999999999999999999999999999999999 9999999999999999999854
No 40
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.51 E-value=8.4e-15 Score=131.58 Aligned_cols=60 Identities=17% Similarity=0.367 Sum_probs=55.6
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHH
Q 003069 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 81 (851)
Q Consensus 18 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~ 81 (851)
.+++.+||.+|+..||..|..++||+..+|.+||..+ ||+++||+|||||||+|+|++++
T Consensus 12 p~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----gLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 12 PQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQT----KLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHSCCS
T ss_pred chhhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CcChHHCeecccccchHHHHHHH
Confidence 3456699999999999999999999999999999999 99999999999999999998543
No 41
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.51 E-value=9e-15 Score=129.27 Aligned_cols=61 Identities=25% Similarity=0.343 Sum_probs=57.1
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
..+++|+.||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 21 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 21 KKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNIL----NLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHh
Confidence 346778899999999999999999999999999999999 9999999999999999999843
No 42
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.51 E-value=6.9e-15 Score=122.32 Aligned_cols=58 Identities=28% Similarity=0.550 Sum_probs=48.4
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 77 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~K 77 (851)
..+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhccC
Confidence 346788999999999999999999999999999999999 9999999999999999875
No 43
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.50 E-value=1.7e-14 Score=124.60 Aligned_cols=62 Identities=29% Similarity=0.536 Sum_probs=57.9
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 15 IMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 15 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
+..++.|++||.+|+..||..|..++||+..++.+||..+ ||+++||++||||||+|+|+++
T Consensus 7 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRT----DLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp SCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CCCHHHHHHHhHHHHHHHHHHH
Confidence 3457788999999999999999999999999999999999 9999999999999999999854
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.49 E-value=2.1e-14 Score=130.47 Aligned_cols=61 Identities=30% Similarity=0.483 Sum_probs=55.3
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATL----ELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CCCHHHhHHHHHHHhHHHhHHh
Confidence 346788999999999999999999999999999999999 9999999999999999999864
No 45
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.49 E-value=1.4e-14 Score=125.16 Aligned_cols=59 Identities=22% Similarity=0.344 Sum_probs=56.4
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 18 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
++.|+.||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+.+
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKIT----GLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CcCHHHeeeCChhHhHHHHhhC
Confidence 6778999999999999999999999999999999999 9999999999999999999854
No 46
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.49 E-value=9e-15 Score=128.88 Aligned_cols=58 Identities=19% Similarity=0.369 Sum_probs=54.2
Q ss_pred CCCCCcccCCHHHHHHHHHhHhc-----CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSE-----CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~-----~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kk 78 (851)
..+|+|+.||.+|++.|| .|.+ ++||+...|.+||.+| ||+++||||||||||+|+|+
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~l----gL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 16 TTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAET----GVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHS----CCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHh----CcCcCcccccccccccCCCC
Confidence 457788899999999999 7999 9999999999999999 99999999999999999874
No 47
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.48 E-value=3.4e-14 Score=128.68 Aligned_cols=63 Identities=22% Similarity=0.461 Sum_probs=58.6
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCC---------------CChhhhhhhhhhhhHHHHHH
Q 003069 15 IMDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSN---------------IEPKQIKVWFQNRRCREKQR 79 (851)
Q Consensus 15 ~~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~g---------------L~~rQVkvWFQNRRak~Kkr 79 (851)
...++.|+.||++|+..||..|..++||+..+|.+||.+| | |++.||++||||||+|+|++
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l----~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~ 80 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANAC----NAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR 80 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----HHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CchhhcccccccccCcCCHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999999999999999999999999999 9 99999999999999999986
Q ss_pred HH
Q 003069 80 KE 81 (851)
Q Consensus 80 q~ 81 (851)
+.
T Consensus 81 ~~ 82 (95)
T 2cuf_A 81 AN 82 (95)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 48
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.48 E-value=2.8e-14 Score=118.35 Aligned_cols=55 Identities=31% Similarity=0.495 Sum_probs=53.0
Q ss_pred CcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003069 20 KYVRYTPEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (851)
Q Consensus 20 kr~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kk 78 (851)
++++||.+|+..||..|.. ++||+..++.+||.++ ||+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHccccc
Confidence 4679999999999999999 9999999999999999 99999999999999999986
No 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.8e-14 Score=125.28 Aligned_cols=59 Identities=20% Similarity=0.385 Sum_probs=55.7
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 18 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
++.|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVT----GLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHH----CCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CCChHHhhHHhHHHhHHHHHhc
Confidence 4568899999999999999999999999999999999 9999999999999999999843
No 50
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.47 E-value=2.1e-14 Score=130.32 Aligned_cols=60 Identities=25% Similarity=0.418 Sum_probs=55.8
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 17 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
.+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+.+
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKES----GLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CCCHHHeeecchhhhhHhhhhc
Confidence 36788999999999999999999999999999999999 9999999999999999999854
No 51
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.47 E-value=5.8e-14 Score=120.98 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=56.4
Q ss_pred CCCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkr 79 (851)
..+++|++|+.+|+..||..|.. ++||+..+|.+||.++ ||+++||++||||||+|+|+.
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~ 68 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQT----NLTLLQVNNWFINARRRILQS 68 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----CcCHHHHHHHhHHHHhhcccc
Confidence 45778889999999999999987 9999999999999999 999999999999999999984
No 52
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.46 E-value=1.9e-14 Score=124.33 Aligned_cols=58 Identities=24% Similarity=0.415 Sum_probs=54.6
Q ss_pred CCCCcccCCHHHHHHHHHhH-hcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003069 17 DSTKYVRYTPEQVEALERVY-SECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (851)
Q Consensus 17 ~~rkr~r~T~~Ql~~LE~~F-~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kk 78 (851)
..+++.+++.+|+..||..| ..++||+..+|.+||.++ ||+++||++||||||+|+|+
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l----~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQL----DWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CCChhhcchhhhhcccCCCC
Confidence 35667789999999999999 999999999999999999 99999999999999999986
No 53
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.46 E-value=6.3e-14 Score=120.75 Aligned_cols=59 Identities=27% Similarity=0.523 Sum_probs=55.9
Q ss_pred CCCcccCCHHHHHHHHHhH---hcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 18 STKYVRYTPEQVEALERVY---SECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 18 ~rkr~r~T~~Ql~~LE~~F---~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
+++|++||.+|+..||..| ..++||+..+|.+||.++ ||+++||++||||||+|+|++.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~ 63 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNI 63 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhccccc
Confidence 5788999999999999999 899999999999999999 9999999999999999999843
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.45 E-value=6.5e-14 Score=124.52 Aligned_cols=59 Identities=27% Similarity=0.523 Sum_probs=55.5
Q ss_pred CCCcccCCHHHHHHHHHhH---hcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 18 STKYVRYTPEQVEALERVY---SECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 18 ~rkr~r~T~~Ql~~LE~~F---~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
+++|++||.+|+..||..| ..++||+..+|.+||.++ ||+++||++||||||+|+|++.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~ 63 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNI 63 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhcc
Confidence 5788999999999999999 899999999999999999 9999999999999999999844
No 55
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.45 E-value=2.7e-14 Score=119.88 Aligned_cols=58 Identities=26% Similarity=0.488 Sum_probs=55.1
Q ss_pred CCCCcccCCHHHHHHHHHhH---hcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003069 17 DSTKYVRYTPEQVEALERVY---SECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (851)
Q Consensus 17 ~~rkr~r~T~~Ql~~LE~~F---~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kk 78 (851)
.+++|++||.+|+..||..| ..++||+..++.+||.++ ||+++||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhcc
Confidence 46788899999999999999 899999999999999999 99999999999999999886
No 56
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.1e-13 Score=124.09 Aligned_cols=59 Identities=24% Similarity=0.400 Sum_probs=54.8
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 18 STKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 18 ~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
..++.++|.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 14 p~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~----~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 14 PQKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVET----KLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHh----CCCHHhccHhhHhHHHHHHHHh
Confidence 3566679999999999999999999999999999999 9999999999999999998743
No 57
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.43 E-value=1e-13 Score=117.44 Aligned_cols=53 Identities=25% Similarity=0.407 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 24 YTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 24 ~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
-|.+|+..||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~t----gLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVT----GLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CcCHHHhhHhcccchhhhhccC
Confidence 4789999999999999999999999999999 9999999999999999999743
No 58
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.42 E-value=5.1e-14 Score=120.78 Aligned_cols=55 Identities=33% Similarity=0.544 Sum_probs=52.2
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 22 VRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 22 ~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
..+|..|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l----~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNL----KLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHSCCSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCChhheeecchhhhhhhhhhh
Confidence 368999999999999999999999999999999 9999999999999999999854
No 59
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.41 E-value=1.2e-13 Score=122.08 Aligned_cols=59 Identities=27% Similarity=0.430 Sum_probs=54.2
Q ss_pred CCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 18 STKYVRYTPEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 18 ~rkr~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
++++++||.+|+..||..|.. ++||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~----gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHH----CCCHHHcccccHHHHccccccc
Confidence 456678999999999999999 9999999999999999 9999999999999999999843
No 60
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.41 E-value=1.5e-13 Score=122.43 Aligned_cols=57 Identities=30% Similarity=0.472 Sum_probs=54.5
Q ss_pred CCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHH
Q 003069 17 DSTKYVRYTPEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 77 (851)
Q Consensus 17 ~~rkr~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~K 77 (851)
.+++|++||.+|+..||..|.. ++||+..+|.+||.++ ||+++||++||||||+|+|
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~----gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhcc
Confidence 4667889999999999999999 9999999999999999 9999999999999999987
No 61
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.40 E-value=2.8e-13 Score=119.92 Aligned_cols=62 Identities=24% Similarity=0.238 Sum_probs=56.7
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 15 IMDSTKYVRYTPEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 15 ~~~~rkr~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
...+++|++|+.+|+..||..|.+ ++||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~----gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKT----NLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHhhHHhhhhHhhhcHHH
Confidence 345778889999999999999988 5999999999999999 9999999999999999998743
No 62
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.40 E-value=9e-14 Score=135.47 Aligned_cols=60 Identities=35% Similarity=0.529 Sum_probs=55.1
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkr 79 (851)
..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|++
T Consensus 86 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 86 RKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEEL----NLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CCChhhchhhhHhhhhhhhcc
Confidence 346778899999999999999999999999999999999 999999999999999999974
No 63
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.39 E-value=8.6e-14 Score=127.36 Aligned_cols=62 Identities=24% Similarity=0.442 Sum_probs=53.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHh------------------CCccCC---CChhhhhhhhhhhhH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRE------------------CPILSN---IEPKQIKVWFQNRRC 74 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~------------------L~~~~g---L~~rQVkvWFQNRRa 74 (851)
..+++|+.||+.|+..||..|..++||+...|.+||.. | | |++.||++||||||+
T Consensus 8 k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~l----g~~~lse~qV~vWFqNRR~ 83 (99)
T 1lfb_A 8 KGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGL----GSNLVTEVRVYNWFANRRK 83 (99)
T ss_dssp -----CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTT----GGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcccccccccccccccccc----CccccCcceeeeccHHHHH
Confidence 45778899999999999999999999999999999999 7 8 999999999999999
Q ss_pred HHHHHHH
Q 003069 75 REKQRKE 81 (851)
Q Consensus 75 k~Kkrq~ 81 (851)
++|+++.
T Consensus 84 k~k~k~~ 90 (99)
T 1lfb_A 84 EEAFRHK 90 (99)
T ss_dssp TTSCCC-
T ss_pred HHHHhch
Confidence 9987653
No 64
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1.7e-13 Score=115.81 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=50.7
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003069 21 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (851)
Q Consensus 21 r~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kk 78 (851)
+..++.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|.|+
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSV----NLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CcChhhcCcchhcccCCCCC
Confidence 3567899999999999999999999999999999 99999999999999998765
No 65
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.39 E-value=3.8e-13 Score=114.17 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=54.7
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhc-CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHH
Q 003069 15 IMDSTKYVRYTPEQVEALERVYSE-CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 77 (851)
Q Consensus 15 ~~~~rkr~r~T~~Ql~~LE~~F~~-~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~K 77 (851)
+..+|.|+.|+.+|+..|+..|+. ++||+...|.+||.++ ||++++|++||||||--.|
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~t----GL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQL----DLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCCHHHHHHhhccceeeec
Confidence 456888999999999999999999 9999999999999999 9999999999999996433
No 66
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.38 E-value=1.4e-13 Score=116.42 Aligned_cols=49 Identities=27% Similarity=0.523 Sum_probs=46.3
Q ss_pred HHHHHHHHHhH-hcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003069 26 PEQVEALERVY-SECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (851)
Q Consensus 26 ~~Ql~~LE~~F-~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kk 78 (851)
+.|+.+||+.| ..++||+..+|.+||++| ||+++||++||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l----~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQL----DWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHH----CSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHh----CCCHHHHHHHHHHHHhccCC
Confidence 56899999999 678999999999999999 99999999999999999985
No 67
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=5.5e-13 Score=122.33 Aligned_cols=67 Identities=24% Similarity=0.451 Sum_probs=58.4
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCC-------------ccC----CCChhhhhhhhhhhhHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECP-------------ILS----NIEPKQIKVWFQNRRCREKQ 78 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~-------------~~~----gL~~rQVkvWFQNRRak~Kk 78 (851)
..+|+|+.|++.|+.+||..|..++||+..+|.+||.+|. -|+ ++++.+|++||||||+|+|+
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr 84 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAF 84 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHH
Confidence 4578889999999999999999999999999999999981 112 58899999999999999998
Q ss_pred HHHH
Q 003069 79 RKEA 82 (851)
Q Consensus 79 rq~~ 82 (851)
++..
T Consensus 85 ~~~~ 88 (102)
T 2da6_A 85 RQKL 88 (102)
T ss_dssp HHHH
T ss_pred hhHh
Confidence 6543
No 68
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.37 E-value=2.4e-13 Score=134.36 Aligned_cols=60 Identities=32% Similarity=0.448 Sum_probs=54.4
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkr 79 (851)
..+|+|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+||+
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQL----NMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH----CCChHHhhHhhHHhhhhhhcc
Confidence 347788999999999999999999999999999999999 999999999999999999974
No 69
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.37 E-value=3.5e-13 Score=131.81 Aligned_cols=59 Identities=27% Similarity=0.567 Sum_probs=56.0
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kk 78 (851)
..+|+|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+||
T Consensus 92 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 92 KKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKEL----NYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CCCHHHhHHHHHHHHhccCC
Confidence 456778899999999999999999999999999999999 99999999999999999986
No 70
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.36 E-value=1.3e-12 Score=136.25 Aligned_cols=176 Identities=20% Similarity=0.233 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHhhcCCCCceEecCCCCCCCCccceeeccCCCcceeeeeeeEEeeChhhHH-HHhcCccchhhcCCccee
Q 003069 169 VAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIA-EILKDCPSWFRDCRCLDV 247 (851)
Q Consensus 169 ~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~g~~~~~~~~~~eASR~~glV~~~~~~LV-e~lmD~~~W~~~f~~~~~ 247 (851)
++++++.|+++.+.....-|-.... +.|-.++.. ....+...-.=|..++|...+.+++ ++|.|+.+|-..|...++
T Consensus 33 ~l~~~~~~ll~~~~~~~~gW~~~~~-~~gi~V~~k-~~~~~~~~~~~K~~~~v~~~~~~v~~~ll~dr~~Wd~~~~~~~v 110 (237)
T 2pso_A 33 YLNHLIQGLQKEAKEKFKGWVTCSS-TDNTDLAFK-KVGDGNPLKLWKASVEVEAPPSVVLNRVLRERHLWDEDFVQWKV 110 (237)
T ss_dssp CCCCHHHHHHHHHHHHCCSCEEECC-SSSCEEEEE-CCCSSCCCCEEEEEEEESSCHHHHHHHHHHCGGGTCTTBCCCEE
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEec-CCCeEEEEE-EcCCCCCcEEEEEEEEEcCChHHHHHHHHhhhhhHHhhhceEEE
Confidence 4567788888777644556977643 222111111 1123444456688999988887765 789999999999999999
Q ss_pred eeeccCCCccHHHHHHHhhcccccccccceeeEEeecce-eCCCcEEEEEeecCCCCCCCCCCCCCCccceeecccceEE
Q 003069 248 LSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTS-LEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLI 326 (851)
Q Consensus 248 l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq-~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclI 326 (851)
|+.+... -.++|..+..|.| +++|||.++||.++ +++|.++||-.|++. +..|+. +++|+..+++|++|
T Consensus 111 le~id~~----~~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h----~~~P~~-g~VR~~~~~~g~~i 180 (237)
T 2pso_A 111 VETLDRQ----TEIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEH----EEAQLL-GGVRAVVMDSQYLI 180 (237)
T ss_dssp EEEEETT----EEEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCC----TTCCCC-SSEECCEEEEEEEE
T ss_pred EEEcCCC----cEEEEEEecCCCC-cCCeEEEEEEEEEEECCCCEEEEEEEcccC----CCCCCC-CcEEEEEeccEEEE
Confidence 9988742 1345555665555 79999999999985 789999999999984 334555 89999999999999
Q ss_pred eecCCCceEEEEEEeeeccCCCccccchhhh
Q 003069 327 RPCEGGGSIIHIVDHVDLDAWSVPEVLRPLY 357 (851)
Q Consensus 327 q~~~nG~skVtwVeH~e~d~~~v~~l~rpl~ 357 (851)
+|+++|.|+|||+-|+|.. ..+|.-+...+
T Consensus 181 ~P~~~~~t~vt~~~~~Dp~-G~iP~~ln~~~ 210 (237)
T 2pso_A 181 EPCGSGKSRLTHICRIDLK-GHSPEWYSKGF 210 (237)
T ss_dssp EECSTTCEEEEEEEEECCS-SSCTTTTTTHH
T ss_pred EECCCCCEEEEEEEEeCCC-CCchHHHHHHH
Confidence 9999999999999999988 56786654444
No 71
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.35 E-value=3.1e-13 Score=134.12 Aligned_cols=61 Identities=31% Similarity=0.486 Sum_probs=51.5
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 80 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq 80 (851)
..+|+|++||..|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+.+
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSL----QLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTBSC
T ss_pred cCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CCChhhhhhhhHHhhHHHhhcc
Confidence 346788899999999999999999999999999999999 9999999999999999999854
No 72
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.35 E-value=5.5e-12 Score=129.84 Aligned_cols=197 Identities=15% Similarity=0.153 Sum_probs=144.7
Q ss_pred hhhHHHHHHHHHHHHHhhcCCCCceEecCCCCCCCCccceeeccCCCcceeeeeeeEEeeChhhHH-HHhcC---ccchh
Q 003069 164 AGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIA-EILKD---CPSWF 239 (851)
Q Consensus 164 ~~l~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~g~~~~~~~~~~eASR~~glV~~~~~~LV-e~lmD---~~~W~ 239 (851)
...+.++++|+++++.+... .--|-.....+.|-.++... . .+ .+-.-|..++|...+..+. ++|+| +.+|-
T Consensus 21 ~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~~~g~~vy~~~-~-~~-~g~~~k~~~~v~~~~~~v~~~~~~d~~~r~~Wd 96 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILAQ-EENWKFEKNNEYGDTVYTIE-V-PF-HGKTFILKTFLPCPAELVYQEVILQPERMVLWN 96 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-GGGCEEEEECTTCCEEEEEE-E-TT-TEEEEEEEEEESSCHHHHHHHTTTCHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCCCEEEEEe-c-CC-CCceEEEEEEecCCHHHHHHHHHhCccchhhcc
Confidence 35688999999999999863 34687753211222222111 0 11 1224589999999999998 66654 57888
Q ss_pred hcCCcceeeeeccCCCccHHHHHHHhhccc--ccccccceeeEEeecceeCCCcEEEEEeecCCCCCCCCCCCCCCccce
Q 003069 240 RDCRCLDVLSVIPTGNGGTIELIYMQTYAP--TTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRA 317 (851)
Q Consensus 240 ~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~--SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~ 317 (851)
..|...++|..+..+.. ++-++..+ .+++++|||.++|+++.. ++.++||-.|++. +..|+...|+|+
T Consensus 97 ~~~~~~~vle~~~~~t~-----I~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~~Sv~~----~~~P~~~~~VR~ 166 (229)
T 1em2_A 97 KTVTACQILQRVEDNTL-----ISYDVSAGAAGGVVSPRDFVNVRRIERR-RDRYLSSGIATSH----SAKPPTHKYVRG 166 (229)
T ss_dssp TTEEEEEEEEEETTTEE-----EEEEEECCBTTTTBCCEEEEEEEEEEEC-SSEEEEEEEECCC----TTSCCCTTSEEC
T ss_pred cccceEEEEEecCCCeE-----EEEEEecCcCCCCcCCCeeEEEEEEEEc-CCEEEEEEecccC----CCCCCCCCCEee
Confidence 88888899998875421 24446655 578999999999999987 5669999999974 445667789999
Q ss_pred eecccceEEeecC--CCceEEEEEEeeeccCCCccccchhhhhchHHHHHHHHHHHHH-HHHhh
Q 003069 318 EMLASGFLIRPCE--GGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIRQI 378 (851)
Q Consensus 318 rrlPSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~aLr-~~e~l 378 (851)
..++||++|++++ +|.|+|||+-|++..-+ +| +.++++.+.-+.-.++..|| +|+.+
T Consensus 167 ~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~l~n~~~~~~~~~~~~~Lr~~~~~~ 226 (229)
T 1em2_A 167 ENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LP---RYLIHQSLAATMFEFAFHLRQRISEL 226 (229)
T ss_dssp EECSEEEEEEECSSCTTCEEEEEEECEECCSS-SC---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eecccEEEEEecCCCCCcEEEEEEEEECCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988 67899999999998765 66 67777776666667788886 66654
No 73
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.35 E-value=5.7e-13 Score=131.03 Aligned_cols=59 Identities=25% Similarity=0.443 Sum_probs=56.3
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kk 78 (851)
..+|+|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQL----GLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHc----CCChhheeeccccccccccC
Confidence 356788999999999999999999999999999999999 99999999999999999997
No 74
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.32 E-value=1.1e-11 Score=126.96 Aligned_cols=195 Identities=19% Similarity=0.259 Sum_probs=143.0
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCceEecCCCCCCCCccceeeccCCCcceeeeeeeEEeeChhhHHHHhc-C---ccchhh
Q 003069 165 GLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIAEILK-D---CPSWFR 240 (851)
Q Consensus 165 ~l~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~g~~~~~~~~~~eASR~~glV~~~~~~LVe~lm-D---~~~W~~ 240 (851)
-...+|++||++++.+... +.-|-.....+.|-..+-.. . .+. +-.=|..++|...+.++.+.|+ | +.+|-.
T Consensus 11 ~y~~~~~~~~~~~l~~~~~-~~gW~~~~~~~~gv~vy~~~-~-~~~-g~~~k~~~~v~~~~~~v~~~l~~d~~~r~~Wd~ 86 (221)
T 3p0l_A 11 AYLQQGEEAMQKALGILSN-QEGWKKESQQDNGDKVMSKV-V-PDV-GKVFRLEVVVDQPMERLYEELVERMEAMGEWNP 86 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHS-CTTCEEEEECTTSCEEEEEE-C-SSS-CEEEEEEEEESSCHHHHHHHHTTTGGGTTTSCT
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCeEeeecCCCcEEEEEE-c-CCC-ceEEEEEEEEcCCHHHHHHHHHhccchhhhcCc
Confidence 3478999999999999763 45698862112232222111 1 122 3556999999999999999984 5 688999
Q ss_pred cCCcceeeeeccCCCccHHHHHHHhh-cccccccccceeeEEeecceeCCCcEEEEEeecCCCCCCCCCCCCCCccceee
Q 003069 241 DCRCLDVLSVIPTGNGGTIELIYMQT-YAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEM 319 (851)
Q Consensus 241 ~f~~~~~l~~~~~g~~G~lqLm~aE~-~v~SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rr 319 (851)
.|...++|+.+..+ + .+.|... ..+.+++++|||.++||.++. +|.++|+-.|++. +..|+..+|+|+..
T Consensus 87 ~~~~~~vle~~~~~---t-~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~~----~~~P~~~g~VR~~~ 157 (221)
T 3p0l_A 87 NVKEIKVLQKIGKD---T-FITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMATDF----GNMPEQKGVIRAEH 157 (221)
T ss_dssp TCSEEEEEEECSSS---E-EEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEECCC----TTSCCCTTSEECEE
T ss_pred chheEEEEEecCCC---e-EEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEeccC----CCCCCCCCeEEEec
Confidence 99999999988753 2 2333221 123468999999999999985 6899999999873 34556678999999
Q ss_pred cccceEEeecCCC--ceEEEEEEeeeccCCCccccchhhhhchHHHHHHHHHHHHH-HHH
Q 003069 320 LASGFLIRPCEGG--GSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIR 376 (851)
Q Consensus 320 lPSGclIq~~~nG--~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~aLr-~~e 376 (851)
+++|++|+++++| .|+|||+-|+|..-+ +| +.+++..+.-+.--++..|| +|+
T Consensus 158 ~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 158 GPTCMVLHPLAGSPSKTKLTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp CSCEEEEEEETTEEEEEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cceEEEEEECCCCCCcEEEEEEEEecCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988 999999999998866 55 45666666666667778886 555
No 75
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.28 E-value=1e-12 Score=129.96 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=54.3
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkr 79 (851)
..+|+|++||.+|+..||..|..++||+...|.+||.++ ||+++||++||||||+|+|+.
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l----~L~~~qV~~WFqNrR~r~k~~ 155 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQL----GLELSTVSNFFMNARRRSLDK 155 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTSSCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CcCHHHhhhcChhhhcccccc
Confidence 347788999999999999999999999999999999999 999999999999999999874
No 76
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.27 E-value=2.9e-12 Score=109.07 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=49.6
Q ss_pred cCCHHHHHHHHHhHh---cCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003069 23 RYTPEQVEALERVYS---ECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (851)
Q Consensus 23 r~T~~Ql~~LE~~F~---~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkr 79 (851)
+||.+|+..||..|. .+|||+..+|.+||.++ ||+++||++||||||+|+|+.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~ 59 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDT----GLTILQVNNWFINARRRIVQP 59 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHh----CcCHHHhhhhhHHHHHHHhHH
Confidence 799999999999999 99999999999999999 999999999999999999974
No 77
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.07 E-value=2.1e-11 Score=124.02 Aligned_cols=59 Identities=27% Similarity=0.521 Sum_probs=53.1
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCC---------------------CChhhhhhhhhhhhH
Q 003069 16 MDSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSN---------------------IEPKQIKVWFQNRRC 74 (851)
Q Consensus 16 ~~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~g---------------------L~~rQVkvWFQNRRa 74 (851)
..+|+|+.|++.|+..||+.|..++||+...|.+||..| | |++.||++||||||+
T Consensus 114 k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~----~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~ 189 (194)
T 1ic8_A 114 KGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEEC----NRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 189 (194)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHH----HHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHH
T ss_pred cCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CchhhccccccccccccccccccCccccchhchhhhh
Confidence 346778889999999999999999999999999999999 9 999999999999999
Q ss_pred HHHH
Q 003069 75 REKQ 78 (851)
Q Consensus 75 k~Kk 78 (851)
|+|.
T Consensus 190 ~~k~ 193 (194)
T 1ic8_A 190 EEAF 193 (194)
T ss_dssp HCC-
T ss_pred hhhc
Confidence 8775
No 78
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.04 E-value=2.1e-10 Score=102.89 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=51.0
Q ss_pred ccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHH
Q 003069 22 VRYTPEQVEALERVYSE---CPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 79 (851)
Q Consensus 22 ~r~T~~Ql~~LE~~F~~---~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkr 79 (851)
+-|+.+++..|+.+|.+ +|||+..+|.+||.++ ||+++||++||||||.|.|+.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~t----gLt~~QV~~WF~NrR~R~kk~ 66 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQT----HLSTLQVCNWFINARRRLLPD 66 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHS----SSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhH
Confidence 46899999999999988 8999999999999999 999999999999999999874
No 79
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=2.2e-10 Score=97.82 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=44.3
Q ss_pred HHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHH
Q 003069 26 PEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCR 75 (851)
Q Consensus 26 ~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak 75 (851)
.+|+..||.+|..+++|+..++.+||..+ ||+.+.||+||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~l----gL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAV----GLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHh----CCCHHHHHHHHhhcccc
Confidence 68999999999999999999999999999 99999999999999974
No 80
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=98.97 E-value=9e-10 Score=111.47 Aligned_cols=150 Identities=19% Similarity=0.260 Sum_probs=115.6
Q ss_pred eeeeeeeEEe-eChhhHHHHhcC---ccchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeecceeC
Q 003069 213 VAARACGLVS-LDPTKIAEILKD---CPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLE 288 (851)
Q Consensus 213 eASR~~glV~-~~~~~LVe~lmD---~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~ 288 (851)
-.-|..++|. ..+..+.+.|+| +.+|...+...++++. .| . .++|.++..|.|+ ..|||.++|+++.++
T Consensus 52 ~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~--~~--~--~i~~~~~~~p~p~-~~RD~v~~~~~~~~~ 124 (214)
T 1ln1_A 52 YEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQEC--NG--E--TVVYWEVKYPFPM-SNRDYVYLRQRRDLD 124 (214)
T ss_dssp EEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEE--TT--E--EEEEEEECCCTTS-CCEEEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHHhhEEEecc--CC--C--EEEEEEEEcCCCC-CCceEEEEEEEEecc
Confidence 4669999995 999999999999 7889988888888765 22 2 2578888888886 999999999999875
Q ss_pred -CC--cEEEEEeecCCCCCCCCCCCCCCccceeecccceEEeecCCCceEEEEEEeeeccCCCccccchhhhhchHHHHH
Q 003069 289 -DG--SLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQ 365 (851)
Q Consensus 289 -~G--~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afga 365 (851)
+| .|+|+-.|++. |..|+...++|++.+++|++|++.++|.|+||++-|+|.. ..+|.-+. +..+.-+.
T Consensus 125 ~~g~~~~~i~~~Sv~~----p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~-G~iP~~l~---n~~~~~~~ 196 (214)
T 1ln1_A 125 MEGRKIHVILARSTSM----PQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GQIPSWLI---NWAAKNGV 196 (214)
T ss_dssp STTCCEEEEEEEECCB----TTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCS-SCCCHHHH---HHHHHTHH
T ss_pred cCCCeEEEEEEecccC----CCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCC-CcccHHHH---HHHHHHHh
Confidence 66 49999999974 3355567899999999999999999999999999999988 56764332 22222233
Q ss_pred HHHHHHHH-HHHh
Q 003069 366 KMTMAAMR-HIRQ 377 (851)
Q Consensus 366 r~w~~aLr-~~e~ 377 (851)
-.++..|| +|+.
T Consensus 197 ~~~l~~l~k~~~~ 209 (214)
T 1ln1_A 197 PNFLKDMARACQN 209 (214)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 44555554 4543
No 81
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.93 E-value=7.9e-10 Score=117.10 Aligned_cols=128 Identities=21% Similarity=0.335 Sum_probs=104.6
Q ss_pred eeeeeeEEeeChhhHHHHhcCc---cchhhcCCcceeeeeccCCCccHHHHHHHhhccccc--ccccceeeEEeecce-e
Q 003069 214 AARACGLVSLDPTKIAEILKDC---PSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTT--LAAARDFWLLRYSTS-L 287 (851)
Q Consensus 214 ASR~~glV~~~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SP--Lvp~Re~~fLRyckq-~ 287 (851)
.=|..++|...+..|.+.|+|. .+|-..+...++|+.+... .++| ++..|+| ++++|||..|||.+. .
T Consensus 89 ~~k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~~~~~vle~id~~-----~ivY-~~~~p~~~~~v~~RDFV~lr~~r~~~ 162 (258)
T 3fo5_A 89 SFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQVDED-----DAIY-HVTSPALGGHTKPQDFVILASRRKPC 162 (258)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGGGGTCTTCCEEEEEEEEETT-----EEEE-EEEECCCTTCSSCEEEEEEEEEECCS
T ss_pred EEEEEEEEeCCHHHHHHHHhCchhHhHhhhhccEEEEEEEcCCC-----eEEE-EEecCCccCCCCCCEEEEEEEEEecc
Confidence 3488999999999999999886 5777788888888887754 2456 6667775 799999999999987 4
Q ss_pred CCCc-EEEEEeecCCCCCCCCCCCCCCccceeecccceEEeecCCCceEEEEEEeeeccCCCccccc
Q 003069 288 EDGS-LVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVL 353 (851)
Q Consensus 288 ~~G~-waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~ 353 (851)
.+|. .+|+-+|++. +..|+...|+|++.+|+||+|+++++|.|+||++-|++- ..+|..-
T Consensus 163 ~~G~~yvi~~~SV~h----p~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dp--G~lP~~~ 223 (258)
T 3fo5_A 163 DNGDPYVIALRSVTL----PTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATP--GVLNYVT 223 (258)
T ss_dssp STTCCEEEEEEEEEC----TTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCG--GGHHHHH
T ss_pred CCCCEEEEEEEeccC----CCCCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCC--CCCCceE
Confidence 5775 9999999984 446677789999999999999999999999999988873 4455433
No 82
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.88 E-value=8.1e-10 Score=113.91 Aligned_cols=56 Identities=29% Similarity=0.564 Sum_probs=51.4
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCC---------------------CChhhhhhhhhhhhHH
Q 003069 17 DSTKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSN---------------------IEPKQIKVWFQNRRCR 75 (851)
Q Consensus 17 ~~rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~g---------------------L~~rQVkvWFQNRRak 75 (851)
.+|.|+.|++.|+..||..|..++||+..+|.+||..| | |++.||++||||||++
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~----n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEEC----NRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----HHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----ChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 46777889999999999999999999999999999998 6 8999999999999975
Q ss_pred H
Q 003069 76 E 76 (851)
Q Consensus 76 ~ 76 (851)
.
T Consensus 218 ~ 218 (221)
T 2h8r_A 218 E 218 (221)
T ss_dssp C
T ss_pred h
Confidence 3
No 83
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=98.86 E-value=1.4e-08 Score=104.51 Aligned_cols=190 Identities=19% Similarity=0.291 Sum_probs=133.0
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCceEecCCCCCCCCccceeec-cCCCcceeeeeeeEEeeChhhHHHHhcCcc---chhh
Q 003069 165 GLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAV-SRNCSGVAARACGLVSLDPTKIAEILKDCP---SWFR 240 (851)
Q Consensus 165 ~l~~~A~~am~Ell~la~~~~plWi~~~g~~~g~~~~g~~~~-~~~~~~eASR~~glV~~~~~~LVe~lmD~~---~W~~ 240 (851)
-+.+.+.++|..+..+ .+.-|-.... +.| +.++-. ..+..+-.-|..++|...+..|.+.|+|.. +|-.
T Consensus 25 ~~~~~~~e~l~~~~~~---~~~~W~~~~~-~~g---v~vy~~~~~~~~~~~~k~~~~v~~~~~~v~~~l~d~~~r~~Wd~ 97 (224)
T 1jss_A 25 SISTKLQNTLIQYHSI---EEDEWRVAKK-AKD---VTVWRKPSEEFNGYLYKAQGVMDDVVNNVIDHIRPGPWRLDWDR 97 (224)
T ss_dssp THHHHHHHHHHHHTTS---CGGGCEEEEE-ETT---EEEEEEECSSSSSEEEEEEEEESSCHHHHHHHHSSSTTHHHHCS
T ss_pred HHHHHHHHHHHHHhhh---CCCCCEEEEE-CCC---EEEEEEeccCCCceEEEEEEEEeCCHHHHHHHHhCccccccccc
Confidence 3555666666555443 2556876532 112 222211 223344566999999999999999999966 8988
Q ss_pred cCCcceeeeeccCCCccHHHHHHHhhcc-cccccccceeeEEeecceeCCCcEEEEEeecCCCCCCCCCCCCCCccceee
Q 003069 241 DCRCLDVLSVIPTGNGGTIELIYMQTYA-PTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEM 319 (851)
Q Consensus 241 ~f~~~~~l~~~~~g~~G~lqLm~aE~~v-~SPLvp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rr 319 (851)
.|-..++|+.+.... .+.|.-+.. +-|++..|||.++|+.+..++| ++|+-+|++.. ..+ ++++|++.
T Consensus 98 ~~~~~~vle~id~~~----~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv~hp----~~~--~g~VR~~~ 166 (224)
T 1jss_A 98 LMTSLDVLEHFEENC----CVMRYTTAGQLLNIISPREFVDFSYTVGYEEG-LLSCGVSVEWS----ETR--PEFVRGYN 166 (224)
T ss_dssp SEEEEEEEEECSTTE----EEEEEEECCBTTTTBCCEEEEEEEEEEEETTE-EEEEEEECCCC----CCC--TTSEECEE
T ss_pred ceeeEEEEEEcCCCe----EEEEEEcccccCCCCCCCeEEEEEEEEEcCCe-EEEEEeeeecC----CCC--CCCEEEEe
Confidence 888888888775431 223333332 2356999999999999999877 78899999742 222 48999999
Q ss_pred cccceEEeecCCC--ceEEEEEEeeeccCCCccccchhhhhchHHHHHHHHHHHHH-HHH
Q 003069 320 LASGFLIRPCEGG--GSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIR 376 (851)
Q Consensus 320 lPSGclIq~~~nG--~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~aLr-~~e 376 (851)
+++|++|+++++| .|+|||+-|+|..-+ +| +.+++..+.-+...++..|| +|+
T Consensus 167 ~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 167 HPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IP---QSAVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp CSEEEEEEEETTEEEEEEEEEEECEECCSC-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccEEEEEEcCCCCCceEEEEEEEeCCCCC-cc---HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 9999999999875 899999999998765 45 46676666667777788886 443
No 84
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.85 E-value=6.7e-10 Score=122.25 Aligned_cols=55 Identities=29% Similarity=0.600 Sum_probs=51.7
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHH
Q 003069 19 TKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 77 (851)
Q Consensus 19 rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~K 77 (851)
+.+..++.+|+..||+.|+.++||+..+|.+||+++ ||+++||++||||||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~----~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHH----CcCHHHhhHhhhhcccccC
Confidence 446679999999999999999999999999999999 9999999999999998865
No 85
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=98.44 E-value=1.1e-06 Score=91.89 Aligned_cols=198 Identities=14% Similarity=0.195 Sum_probs=128.8
Q ss_pred hhHHHHHHHHHHHHHhhcC---CCCceEecCCCCCCCCccceeeccCCCcceeeeeeeEEe-eChhhHHHHhcC---ccc
Q 003069 165 GLLAVAEETLAEFLSKATG---TAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVS-LDPTKIAEILKD---CPS 237 (851)
Q Consensus 165 ~l~~~A~~am~Ell~la~~---~~plWi~~~g~~~g~~~~g~~~~~~~~~~eASR~~glV~-~~~~~LVe~lmD---~~~ 237 (851)
.+.++++..+.|.+..+.. +..-|-.... +.|-..+.......|...-.=|..+.|. ..+..+.+.|+| +.+
T Consensus 23 ~~~~~~~~~~~e~l~~~~~~~~~~~~W~~~~~-~~gv~vy~~~~~~~g~~~~~~K~~~~~~~~~~~~v~~~l~d~~~r~~ 101 (255)
T 2e3n_A 23 RFVQKVEEMVQNHMTYSLQDVGGDANWQLVVE-EGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRND 101 (255)
T ss_dssp TTHHHHHHHHHHHHHHTTSCCTTCTTEEEEEE-ETTEEEEEECCEETTEECCCEEEEEEEETCCHHHHHHHHHCGGGHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEe-CCCEEEEEEEcCCCCceeeeEEEEEEEcCCCHHHHHHHHhCcchHhh
Confidence 4677788888888888764 3457877532 1221111100001111111246666665 789999999999 567
Q ss_pred hhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeeccee----CC--CcEEEEEeecCCCCCCCCCCCC
Q 003069 238 WFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSL----ED--GSLVVCERSLTSSTGGPTGPPP 311 (851)
Q Consensus 238 W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~----~~--G~waVvDvSld~~~~~~~~~~~ 311 (851)
|-..+...++|+.+..+ + .++|..+..|.|+ ..|||.++|++++. ++ +.|+|+..|++. +..|+.
T Consensus 102 Wd~~~~~~~vle~i~~~--~--~i~y~~~~~p~p~-s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~----~~~P~~ 172 (255)
T 2e3n_A 102 WETTIENFHVVETLADN--A--IIIYQTHKRVWPA-SQRDVLYLSVIRKIPALTENDPETWIVCNFSVDH----DSAPLN 172 (255)
T ss_dssp HCCSEEEEEEEEEEETT--E--EEEEEEECCCTTS-CCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCC----TTSCCC
T ss_pred hhhhcceeEEEEEcCCC--C--EEEEEEeecCCCc-CCceeEEEEEEEeccccccCCCCEEEEEEeccCC----CCCCCC
Confidence 88888888888887542 2 4566777788885 89999999999987 33 599999999984 234556
Q ss_pred CCccceee---cccceEEeecCC--------CceEEEEEEeeeccCCCccccchhhhhchHHHHHHHHHHHHH-HHH
Q 003069 312 SSFVRAEM---LASGFLIRPCEG--------GGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIR 376 (851)
Q Consensus 312 ~~~~r~rr---lPSGclIq~~~n--------G~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~aLr-~~e 376 (851)
..++|... +.+|++|++..+ +.|+||++-|+|..- .+|.- +++.....+.-.++..|| +++
T Consensus 173 ~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G-~iP~~---lvn~~~~~~~~~~l~~L~k~v~ 245 (255)
T 2e3n_A 173 NRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGG-WAPAS---VLRAVAKREYPKFLKRFTSYVQ 245 (255)
T ss_dssp SSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSS-CCCHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCC-ccCHH---HHHHHHhccccHHHHHHHHHHH
Confidence 68899995 679999998733 579999999999874 46632 333333334444555554 444
No 86
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.43 E-value=5.8e-07 Score=89.30 Aligned_cols=126 Identities=17% Similarity=0.236 Sum_probs=94.5
Q ss_pred eeeeeeeEEeeChhhHHHHhcCc---cchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeecceeCC
Q 003069 213 VAARACGLVSLDPTKIAEILKDC---PSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLED 289 (851)
Q Consensus 213 eASR~~glV~~~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~ 289 (851)
-.=|..++|...+.++.+.|+|. ++|...|...++|+. . ++. .++|.++..|-| +..|||.++|+.+..++
T Consensus 27 ~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~~~~~vle~-~---~~~-~i~y~~~~~p~p-~~~RD~v~~~~~~~~~~ 100 (189)
T 3qsz_A 27 REFRGEVRLKAAADDVVKVLRDANAFRQWMPDVAASELLKA-T---DTE-QYHYLDNSAPWP-VSNRDGVYHFTYEKAGD 100 (189)
T ss_dssp CEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEEEEE-C---SSE-EEEEEEECCSSS-CCCEEEEEEEEEEECTT
T ss_pred EEEEEEEEEECCHHHHHHHHHhHHHhhhHHHhcCEEEEEee-c---CCc-eEEEEEeecCCC-cCCcceEEEEEEEECCC
Confidence 45688999999999999999995 555555555667766 2 222 234656665555 79999999999999888
Q ss_pred CcEEEEEeecCCCCCCCCCCCCCCccceeecccceEEeecCCCceEEEEEEeeeccCCCccc
Q 003069 290 GSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPE 351 (851)
Q Consensus 290 G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~ 351 (851)
|...|+=.+ + .+..|+...++|++.+++|++|++ ++|.|+||++-|+|..- .+|.
T Consensus 101 g~~~i~~~~-~----~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G-~iP~ 155 (189)
T 3qsz_A 101 GAITVRVEA-V----PDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGG-SIPS 155 (189)
T ss_dssp SCEEEEEEE-C----TTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCS-SSCH
T ss_pred CeEEEEEEc-C----CCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCC-CCCH
Confidence 876554333 2 233455668999999999999999 99999999999999874 4553
No 87
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.26 E-value=1e-07 Score=71.96 Aligned_cols=20 Identities=55% Similarity=0.896 Sum_probs=17.6
Q ss_pred hhhhhhhhhhhHHHHHHHHH
Q 003069 63 KQIKVWFQNRRCREKQRKEA 82 (851)
Q Consensus 63 rQVkvWFQNRRak~Kkrq~~ 82 (851)
+||+|||||||+|+|+++.+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 59999999999999996654
No 88
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=97.52 E-value=0.00091 Score=56.64 Aligned_cols=106 Identities=7% Similarity=-0.027 Sum_probs=76.9
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeEEcCCCC
Q 003069 740 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGR 819 (851)
Q Consensus 740 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Gr 819 (851)
+.|.+|+..+.. .++-.++|+|+++.++|+++.+++.+.+...-..+..+......+.++.+.|-.....-....+.|+
T Consensus 5 ~~~~~i~~~d~~-~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 83 (115)
T 4eet_B 5 FIEKNFVITDPR-LPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKSGK 83 (115)
T ss_dssp CCCCSEEEECTT-STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCC
T ss_pred cCCCcEEEEcCC-CCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEecCCCC
Confidence 467777777663 1367999999999999999999999998766555555555555556666655433333344678899
Q ss_pred eEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 820 AVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 820 rf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
.++++ ..+-.+.|++|...|...++.+
T Consensus 84 ~~~~~-~~~~~~~~~~g~~~~~~~~~~D 110 (115)
T 4eet_B 84 KFWNL-LHLQPVRDQKGELQYFIGVQLD 110 (115)
T ss_dssp EEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEE-EEEEEEECCCCCEEEEEEEEEe
Confidence 88874 5666788999999888777754
No 89
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=97.51 E-value=0.0008 Score=58.99 Aligned_cols=105 Identities=8% Similarity=-0.067 Sum_probs=78.7
Q ss_pred cCCCeEeecCCCCCC-CCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeEEcCCC
Q 003069 740 HHSDAIMCCSLKTNA-SPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMG 818 (851)
Q Consensus 740 ~~~~avl~h~~~~~~-dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~G 818 (851)
+.|.+|+..+.+ . +=.++|+|.++.++|+++.+++.+.+...-..+..+......+.++...|-.....-....+.|
T Consensus 5 ~~~~~i~~~d~~--~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g 82 (128)
T 3t50_A 5 FTLMPMLITNPH--LPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKSG 82 (128)
T ss_dssp CCSSCEEEECTT--STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTC
T ss_pred cCcccEEEecCC--CCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEEcCCC
Confidence 367788877764 3 5689999999999999999999999877666555555555556666666654444445567889
Q ss_pred CeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 819 RAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 819 rrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
+.++++ ..+--+.|++|...|...++.+
T Consensus 83 ~~~~~~-~~~~~i~~~~g~~~~~~~~~~D 110 (128)
T 3t50_A 83 EAFWNR-LHISPVHNANGRLQHFVSSQLD 110 (128)
T ss_dssp CEEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred CEEEEE-EEEEEEECCCCCEEEEEEEEEE
Confidence 998885 4566678999999888777754
No 90
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=97.48 E-value=0.0017 Score=54.62 Aligned_cols=111 Identities=7% Similarity=-0.050 Sum_probs=84.1
Q ss_pred HHHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCC
Q 003069 732 DALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPG 810 (851)
Q Consensus 732 ~~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~ 810 (851)
++.++.++. .|.+|+..+.+ -.+.|+|.++.++|+++-+++.+.+...-..+..+......+.++.+.|-...+.
T Consensus 6 ~~~~~~~~~~~~~~i~~~d~~----~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (124)
T 3lyx_A 6 LKQRAKAFDYVFDAIVVTDLQ----GFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGE 81 (124)
T ss_dssp HHHHHHGGGTCSSEEEEEETT----CBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHHhhcCceEEEECCC----CcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccce
Confidence 455667766 77777777644 5899999999999999999999999885556666666666677777777655444
Q ss_pred eeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 811 GMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 811 GvRiss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
-....+.|+.++++ ..+-.+.|++|...|...++.+
T Consensus 82 ~~~~~~~g~~~~~~-~~~~~~~~~~g~~~~~~~~~~D 117 (124)
T 3lyx_A 82 IRMLHKDGHIGWIE-SMCVPIYGENYQMVGALGINRD 117 (124)
T ss_dssp EEEECTTSCEEEEE-EEEEEEECSTTCEEEEEEEEEE
T ss_pred EEEEccCCCEEEEE-EEEEEEECCCCCEEEEEEEEec
Confidence 44567888888774 4666778999999988777754
No 91
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=97.41 E-value=0.0014 Score=60.21 Aligned_cols=112 Identities=6% Similarity=-0.073 Sum_probs=82.3
Q ss_pred HHHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCee
Q 003069 734 LLKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGM 812 (851)
Q Consensus 734 ~~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 812 (851)
.++.++ +.|.+|+..+.+ .+|-.++|+|.++.++|+++.+++.+.+...-..+..+......+.++...|-...+.-.
T Consensus 36 ~~~~~~~~~~~~i~~~d~~-~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 114 (166)
T 3ue6_A 36 SLVKALQMAQQNFVITDAS-LPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDTSVCLL 114 (166)
T ss_dssp HHHHHHHHTTSCEEEEETT-STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHhcCCceEEEEEcc-CCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCceEEEEE
Confidence 345554 488888887762 136789999999999999999999999976666555555555556666666654444445
Q ss_pred EEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 813 CVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 813 Riss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
...+.|+.++++ ..+--+.|++|...|...++.+
T Consensus 115 ~~~~~g~~~~~~-~~~~~i~~~~g~~~~~~~~~~D 148 (166)
T 3ue6_A 115 NYRQDGTTFWNL-FFVAGLRDSKGNIVNYVGVQSK 148 (166)
T ss_dssp EECTTSCEEEEE-EEEEEEECTTSCEEEEEEECCB
T ss_pred EEcCCCCEEEEE-EEEEeeeCCCCCEEEEEEEEEe
Confidence 567899999885 4566678899999998887765
No 92
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=97.34 E-value=0.0019 Score=57.09 Aligned_cols=108 Identities=13% Similarity=0.011 Sum_probs=73.2
Q ss_pred HHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCe
Q 003069 733 ALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGG 811 (851)
Q Consensus 733 ~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 811 (851)
..++.++. .|++|+..+.. =.+.|.|+++.++|+|+-+|+++.+...-..+..+......+.++.++|-. +.|
T Consensus 5 ~~~~~~~~~~~~~i~~~d~~----g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~ 78 (120)
T 2gj3_A 5 EIFRQTVEHAPIAISITDLK----ANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKP--WSG 78 (120)
T ss_dssp HHHHHHHHHCSSEEEEECTT----CBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCC--EEE
T ss_pred HHHHHHHHhCCCeEEEECCC----CCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCC--EEE
Confidence 45566654 88888877654 689999999999999999999997655433333333333344444554432 223
Q ss_pred --eEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 812 --MCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 812 --vRiss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
....+.|+.|+++- .+=.+.|++|...|...++.+
T Consensus 79 e~~~~~~dG~~~~~~~-~~~pi~~~~g~~~~~v~~~~D 115 (120)
T 2gj3_A 79 VLVNRRKDKTLYLAEL-TVAPVLNEAGETIYYLGMHRD 115 (120)
T ss_dssp EEEEECTTSCEEEEEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEE-EEEEEECCCCCEEEEEEEecc
Confidence 34578999988754 455577999998887776654
No 93
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=97.34 E-value=0.0015 Score=57.34 Aligned_cols=103 Identities=8% Similarity=-0.066 Sum_probs=69.2
Q ss_pred CCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhc-HHHHHHHHHHHHHhCcccCCCeeEEcCCCCe
Q 003069 742 SDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAG-RKILCTEFAKIMQQGFAYLPGGMCVSSMGRA 820 (851)
Q Consensus 742 ~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~-r~er~~lL~~v~~qG~~~~y~GvRiss~Grr 820 (851)
+.+|+..+.. .+|-.++|+|.++.+|++|+-+|+++-+.+.-..+.. +.....+ .++.+.|-.....-....+.|+.
T Consensus 3 ~~~i~i~d~~-~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~~kdG~~ 80 (109)
T 1n9l_A 3 RHTFVVADAT-LPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKI-RDAIKKGEACSVRLLNYRKDGTP 80 (109)
T ss_dssp SCEEEEEETT-STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHH-HHHHHHTCCEEEEEEEECTTSCE
T ss_pred ccEEEEEcCC-CCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHH-HHHHHcCCcEEEEEEEEcCCCCE
Confidence 4556655542 1467899999999999999999999987655443333 3333344 44444443322233456799999
Q ss_pred EEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 821 VSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 821 f~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
|+++- .+=-+.|++|...+...++.+
T Consensus 81 ~~~~~-~~~pi~d~~G~~~~~v~~~~D 106 (109)
T 1n9l_A 81 FWNLL-TVTPIKTPDGRVSKFVGVQVD 106 (109)
T ss_dssp EEEEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEE-EEEEEECCCCCEEEEEEEEEe
Confidence 99865 455678999998887776654
No 94
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=97.28 E-value=0.0015 Score=61.38 Aligned_cols=112 Identities=8% Similarity=-0.047 Sum_probs=81.2
Q ss_pred HHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCee
Q 003069 734 LLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGM 812 (851)
Q Consensus 734 ~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 812 (851)
.++.++. .|.+|+..+.. .+|=.++|.|.++.++|+++-+++.+.+...-..+..+......+.++.+.|-.....-.
T Consensus 8 ~~~~~~~~~~~~i~~~d~~-~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 86 (176)
T 4hia_A 8 KIRAVFDRSGVALTLVDMS-LPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVVLR 86 (176)
T ss_dssp HHHHHHHHCSSCCEEEETT-STTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHhcCCCcEEEEecC-CCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEEEE
Confidence 3455554 78888777654 135789999999999999999999999977666665555555666666666654443444
Q ss_pred EEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 813 CVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 813 Riss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
...+.|+.++++ ..+--+.|++|...|...++.+
T Consensus 87 ~~~~dG~~~~~~-~~~~pi~~~~g~~~~~~~~~~D 120 (176)
T 4hia_A 87 NYRANDEPFDNL-LFLHPVGGRPDAPDYFLGSQFE 120 (176)
T ss_dssp EECTTCCEEEEE-EEEEEESSBTTBCSEEEEEEEE
T ss_pred EEcCCCCEEEEE-EEEEEeeCCCCCeEEEEEEEEE
Confidence 567899999885 3455677899998887777654
No 95
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=97.17 E-value=0.0019 Score=65.43 Aligned_cols=112 Identities=12% Similarity=-0.016 Sum_probs=83.8
Q ss_pred HHHHHHhc-CCCeEeecCCCCCC-CCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCC
Q 003069 733 ALLKQLWH-HSDAIMCCSLKTNA-SPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPG 810 (851)
Q Consensus 733 ~~~~~L~~-~~~avl~h~~~~~~-dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~ 810 (851)
..++.++. .|.+|+..+.. . |=.++|.|+++.++|+|+-+|+.+.+...-..+.........+.++.+.|-.....
T Consensus 63 ~~~~~i~~~~~~~i~~~d~~--~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e 140 (258)
T 3p7n_A 63 QWVLDLIEASPIASVVSDPR--LADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVLVE 140 (258)
T ss_dssp HHHHHHHHTCSSEEEEECTT--STTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHhcCCccEEEEcCC--CCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCCeEEE
Confidence 44566654 88888888774 2 56899999999999999999999999876666665555555566666666544444
Q ss_pred eeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 811 GMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 811 GvRiss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
-....+.|..|+++- .+--+.|++|...|...++.+
T Consensus 141 ~~~~~~dG~~~~~~~-~~~pi~d~~g~~~~~v~~~~D 176 (258)
T 3p7n_A 141 ILNYKKDGTPFRNAV-LVAPIYDDDDELLYFLGSQVE 176 (258)
T ss_dssp EEEECTTSCEEEEEE-EEEEEECTTSCSEEEEEEEEE
T ss_pred EEEEcCCCCEEEEee-EEEEEEcCCCCEEEEEEEeee
Confidence 455789999998853 556678999999988777754
No 96
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=97.13 E-value=0.0027 Score=58.13 Aligned_cols=114 Identities=13% Similarity=0.028 Sum_probs=81.8
Q ss_pred HHHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCC
Q 003069 732 DALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPG 810 (851)
Q Consensus 732 ~~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~ 810 (851)
+..++.++. .|.+|+..+.. ..+..++|+|.++.++|+++-+++.+.+...-..+..+......+.++...|-.....
T Consensus 24 ~~~~~~i~~~~~~~i~~~d~~-~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (162)
T 3sw1_A 24 AQLLQSMVDASNDGIVVAEKE-GDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPCREV 102 (162)
T ss_dssp HHHHHHHHHTCSSEEEEEEEE-TTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHhhccCcEEEEeCC-CCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCCcce
Confidence 455666655 78888777665 1122999999999999999999999998876665555555555666666666544433
Q ss_pred eeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 811 GMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 811 GvRiss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
-..+.+.|+.++++ ..+-.+.|++|...|...++.+
T Consensus 103 ~~~~~~~g~~~~~~-~~~~~i~~~~g~~~~~~~~~~D 138 (162)
T 3sw1_A 103 LRNYRKDGSAFWNE-LSITPVKSDFDQRTYFIGIQKD 138 (162)
T ss_dssp EEEECTTCCEEEEE-EEEEEEECSSSSCEEEEEEEEE
T ss_pred EEEECCCCCEEEEE-EEEEEeecCCCCEEEEEEEEEe
Confidence 44457889888874 4566677899998888777754
No 97
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=97.13 E-value=0.0014 Score=55.60 Aligned_cols=109 Identities=6% Similarity=-0.081 Sum_probs=74.4
Q ss_pred HHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCe
Q 003069 733 ALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGG 811 (851)
Q Consensus 733 ~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 811 (851)
+.++.++. .|.+|+..+. +=.+.|+|+++.++|+++-+++.+.+..--. |..++.....+.++.+.+-.....-
T Consensus 3 ~~~~~~~~~~~~~i~~~d~----~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFDR----EMRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLAGEVIRVEED 77 (114)
T ss_dssp HHHHHHHHTCSSEEEEEET----TCBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHhcCCceEEEEcC----CcEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhcCCcceeeee
Confidence 44566655 7788777654 4789999999999999999999998876555 4444555566667766443332222
Q ss_pred eEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 812 MCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 812 vRiss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
....+.|+.++++ ..+--+.|++|...|...++.+
T Consensus 78 ~~~~~~g~~~~~~-~~~~p~~~~~g~~~~~~~~~~D 112 (114)
T 3luq_A 78 CFVRADGRTQWLR-WEVRPWYEGEGRVGGVVIFTED 112 (114)
T ss_dssp EEEC--CCEEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEcCCCcEEEEE-EEEEEeECCCCCEEEEEEEEee
Confidence 3456788887774 3455678999999888777654
No 98
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=97.12 E-value=0.0049 Score=50.59 Aligned_cols=93 Identities=8% Similarity=-0.023 Sum_probs=63.5
Q ss_pred CCCeeEcccHHHHHhhccCHHHHhccc--ccccCChhcHHHHHHHHHHHHHhCcccCCCeeEEcCCCCeEEEcceEEeEe
Q 003069 754 ASPVFTFANQAGLDMLETTLVALQDIM--LDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRAVSYEQAVAWKV 831 (851)
Q Consensus 754 ~dP~F~YaN~aAL~l~e~~w~el~~lp--sr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i~~a~vW~l 831 (851)
+|-.+.|+|+++.++|+++-+++.+.+ ...-..+.........+.++...|-.....-....+.|+.++++ ..+--+
T Consensus 12 ~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~ 90 (110)
T 1byw_A 12 ENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCL-VDVVPV 90 (110)
T ss_dssp SSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEE-EEEEEE
T ss_pred CCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEEEEE-EEEEEe
Confidence 467899999999999999999999988 55554444333333444455555543332333457788888774 345567
Q ss_pred ecCCCCeeEEEEeecC
Q 003069 832 LDDDDSNHCLAFMFMN 847 (851)
Q Consensus 832 ~D~~g~~~GqAa~F~~ 847 (851)
.|++|...|...++.+
T Consensus 91 ~~~~g~~~~~~~~~~D 106 (110)
T 1byw_A 91 KNEDGAVIMFILNFEV 106 (110)
T ss_dssp ECTTCCEEEEEEEEEE
T ss_pred ecCCCCEEEEEEEEEe
Confidence 7889998887776654
No 99
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=97.10 E-value=0.0045 Score=52.32 Aligned_cols=111 Identities=10% Similarity=0.020 Sum_probs=77.2
Q ss_pred HHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeE
Q 003069 735 LKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC 813 (851)
Q Consensus 735 ~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 813 (851)
++.++. .|.+|+..+.. +.+-.+.|.|+++.++|+++-+++.+.+...-..+.........+..+...|-.....-..
T Consensus 8 ~~~~~~~~~~~i~~~d~~-d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (130)
T 2z6d_A 8 LKTALSTLQQTFVVSDAT-QPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSYCGRLLN 86 (130)
T ss_dssp HHHHHHHTTCEEEEEETT-STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHhcccceeeeecc-CCCCcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCcceeEEEE
Confidence 445544 78888777731 1356899999999999999999999988766555554444445555555555433323334
Q ss_pred EcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 814 VSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 814 iss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
+.+.|+.+++ ...+..+.|++|...|...++.+
T Consensus 87 ~~~~g~~~~~-~~~~~~~~~~~g~~~~~~~~~~D 119 (130)
T 2z6d_A 87 YKKDGTPFWN-LLTVTPIKDDQGNTIKFIGMQVE 119 (130)
T ss_dssp ECTTSCEEEE-EEEEEEEECTTSCEEEEEEEEEE
T ss_pred EcCCCcEEEE-EEEEEEEECCCCCeeEEEEEEec
Confidence 5677888877 45667788999999888777754
No 100
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=97.09 E-value=0.0048 Score=53.80 Aligned_cols=101 Identities=9% Similarity=0.064 Sum_probs=75.9
Q ss_pred CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeEEcCCCCe
Q 003069 741 HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRA 820 (851)
Q Consensus 741 ~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grr 820 (851)
++++|+.++. |=.|+|.|.++.++|+|+-+|+.+.+..--..|.+++.-.+.+.++.+.|-.....=--+.+.|+.
T Consensus 8 ~~~~i~~~d~----~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~ 83 (117)
T 3f1p_A 8 SKTFLSEHSM----DMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGY 83 (117)
T ss_dssp GGEEEEEECT----TCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSE
T ss_pred CccEEEEECC----CceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCE
Confidence 4566665544 468999999999999999999999887777778888888888888888776654432234788999
Q ss_pred EEEcceEEeEeecC-CCCeeEEEEeec
Q 003069 821 VSYEQAVAWKVLDD-DDSNHCLAFMFM 846 (851)
Q Consensus 821 f~i~~a~vW~l~D~-~g~~~GqAa~F~ 846 (851)
++++- .+--+.|+ +|...+...++.
T Consensus 84 ~w~~~-~~~~~~d~~~g~~~~iv~~~~ 109 (117)
T 3f1p_A 84 VWLET-QGTVIYNPRNLQPQCIMCVNY 109 (117)
T ss_dssp EEEEE-EEEEEEETTTTEEEEEEEEEE
T ss_pred EEEEE-eeEEEECCCCCCceEEEEEee
Confidence 88864 44456777 788777665553
No 101
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=97.05 E-value=0.0039 Score=56.53 Aligned_cols=106 Identities=13% Similarity=0.042 Sum_probs=71.7
Q ss_pred HhcCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChh------------cHHHHHHHHHHHHHhCc
Q 003069 738 LWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEA------------GRKILCTEFAKIMQQGF 805 (851)
Q Consensus 738 L~~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~------------~r~er~~lL~~v~~qG~ 805 (851)
++.++.+|+..+.. +.+=.++|+|+++.++|+++-+|+.+.+...-..+. .+..... +.++.++|-
T Consensus 31 ~~~~~~~i~~~d~~-d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 108 (149)
T 3d72_A 31 PVDTSVALILCDLK-QKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINT-MRKAIDRNA 108 (149)
T ss_dssp SCCTTSCEEEEETT-STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHH-HHHHHHHTC
T ss_pred hhcCCccEEEEecc-CCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHH-HHHHHHCCC
Confidence 45566777776642 135689999999999999999999998876544443 3333333 444445444
Q ss_pred ccCCCeeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeec
Q 003069 806 AYLPGGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFM 846 (851)
Q Consensus 806 ~~~y~GvRiss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~ 846 (851)
.....-....+.|+.++++- .+--+.|++|...|...++.
T Consensus 109 ~~~~e~~~~~~dG~~~~~~~-~~~~i~~~~g~~~~~v~~~~ 148 (149)
T 3d72_A 109 EVQVEVVNFKKNGQRFVNFL-TMIPVRDETGEYRYSMGFQC 148 (149)
T ss_dssp CEEEEEEEECTTCCEEEEEE-EEEEEECTTSSEEEEEEECC
T ss_pred ceEEEEEEECCCCCEEEEEE-EEEEEEcCCCCEEEEEEEEe
Confidence 33323334578999998853 45567799999988777664
No 102
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=96.92 E-value=0.0026 Score=55.86 Aligned_cols=105 Identities=10% Similarity=0.082 Sum_probs=66.6
Q ss_pred HHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChh-cHHHHHHHHHHHHHhCcccCCCee
Q 003069 735 LKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEA-GRKILCTEFAKIMQQGFAYLPGGM 812 (851)
Q Consensus 735 ~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~-~r~er~~lL~~v~~qG~~~~y~Gv 812 (851)
++.++. +|.+|+. . .+=.+.|+|+++.+||+|+-+++.+.+...-..+. ........+.++.++|-.....-.
T Consensus 5 ~~~~~~~~~~~i~~---~--~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 79 (120)
T 3mqq_A 5 YKTAFHLAPIGLVL---S--RDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRI 79 (120)
T ss_dssp HHHHHHHCSSEEEE---E--ETTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred HHHHHhcCCceEEE---e--cCCEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEE
Confidence 556665 7888753 2 25689999999999999999999999876544332 222333333343444332222233
Q ss_pred EEcCCCCeEEEcceEEeEeecCCCCeeEEEEeec
Q 003069 813 CVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFM 846 (851)
Q Consensus 813 Riss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~ 846 (851)
...+.|+.|+++- ....++.+|...|...+|.
T Consensus 80 ~~~~dG~~~~~~~--~~~~~~~~~~~~~~v~~~~ 111 (120)
T 3mqq_A 80 MKRAGGELFWCHV--TGRALDRTAPLAAGVWTFE 111 (120)
T ss_dssp EECTTSCEEEEEE--EEEESSTTSTTSSEEEEEE
T ss_pred EEeCCCCEEEEEE--EEEECCCCCCceeEEEEEE
Confidence 4678999998863 3455677776556555554
No 103
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=96.85 E-value=0.0066 Score=53.80 Aligned_cols=91 Identities=11% Similarity=0.045 Sum_probs=60.9
Q ss_pred hHHHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCC
Q 003069 731 GDALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLP 809 (851)
Q Consensus 731 ~~~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y 809 (851)
.++.++.+++ +|++|+..+.. =.|.|.|+++.+||+|+-+|+.+.+...-.++..+......+..+...+. ..+
T Consensus 9 se~~~~~l~e~~~d~i~~~d~~----g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 83 (117)
T 2r78_A 9 QSNAYRALFEHAIDGIFIMDAE----GHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGEP-LRE 83 (117)
T ss_dssp HHHHHHHHHHHCSSEEEEECTT----SBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTSHHHHHHHHHHTTCC-EEE
T ss_pred hHHHHHHHHhcCCceEEEECCC----CCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchhHHHHHHHHHHcCCc-EEE
Confidence 3566777776 88888877654 57999999999999999999999876543332222222334444443332 223
Q ss_pred CeeEEcCCCCeEEEcce
Q 003069 810 GGMCVSSMGRAVSYEQA 826 (851)
Q Consensus 810 ~GvRiss~Grrf~i~~a 826 (851)
.-..+.+.|+.|+++-.
T Consensus 84 e~~~~~kdG~~~~v~~~ 100 (117)
T 2r78_A 84 ERTVWTRNGDQLTVELS 100 (117)
T ss_dssp EEEEECTTSCEEEEEEE
T ss_pred EEEEEecCCCEEEEEEE
Confidence 34456899999888643
No 104
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=96.75 E-value=0.011 Score=52.90 Aligned_cols=89 Identities=15% Similarity=0.056 Sum_probs=63.9
Q ss_pred HHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCC-C--
Q 003069 735 LKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLP-G-- 810 (851)
Q Consensus 735 ~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y-~-- 810 (851)
++.++. .|++|+..+.+ =.+.|.|+||.+||+|+-+|+++.+...-..+..+......+.+....|-.... .
T Consensus 18 ~~~l~~~~~d~i~~~d~~----g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (130)
T 1d06_A 18 LRSILDTVPDATVVSATD----GTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMATGEKRIIGIDR 93 (130)
T ss_dssp HHHHHTTCSSEEEEEETT----SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTSCE
T ss_pred HHHHHhhCcCeEEEECCC----CeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHHHHhcCCccccCCee
Confidence 455555 88888887654 579999999999999999999999876655555555555667776666543211 1
Q ss_pred -eeEEcCCCCeEEEcceE
Q 003069 811 -GMCVSSMGRAVSYEQAV 827 (851)
Q Consensus 811 -GvRiss~Grrf~i~~a~ 827 (851)
-..+.+.|+.|+++-.+
T Consensus 94 e~~~~~kdG~~~~~~~~~ 111 (130)
T 1d06_A 94 VVSGQRKDGSTFPMKLAV 111 (130)
T ss_dssp EEEEECTTSCEEEEEEEE
T ss_pred EEEEEeCCCCEEEEEEEE
Confidence 13468999999987543
No 105
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=96.72 E-value=0.0034 Score=60.48 Aligned_cols=111 Identities=8% Similarity=0.008 Sum_probs=79.4
Q ss_pred hHHHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCC
Q 003069 731 GDALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLP 809 (851)
Q Consensus 731 ~~~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y 809 (851)
.++.++.++. .|.+|+..+.. |-.+.|+|.++.++|+++ ++++.+..--..+..+......+.++.+.|-...+
T Consensus 35 ~~~~l~~l~~~~~~~i~~~d~~---~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 109 (185)
T 3kx0_X 35 AAEDVRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSG 109 (185)
T ss_dssp CHHHHHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEEE
T ss_pred hHHHHHHHHhcCCceEEEEECC---CcEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCcccc
Confidence 3456777765 88888887743 679999999999999999 88888876666555555566778888888866554
Q ss_pred CeeEEcCC-----CCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 810 GGMCVSSM-----GRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 810 ~GvRiss~-----Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
..+++... |+..+++ ..+--+.|++|...|...++.+
T Consensus 110 ~~~~~~~~~~~~gg~~~~~~-~~~~pi~~~~g~~~g~~~~~~D 151 (185)
T 3kx0_X 110 SEWRLQTDYDGSGVEERYFD-FVVTPRRRADGSIEGVQLIVDD 151 (185)
T ss_dssp EEEEEC--------CCEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred cceeEEeeccCCCCccEEEE-EEEEEEECCCCCEEEEEEEEEe
Confidence 44554221 5656653 4555678999999998887754
No 106
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=96.68 E-value=0.019 Score=49.39 Aligned_cols=111 Identities=7% Similarity=0.000 Sum_probs=71.8
Q ss_pred HHHHhcCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhccc--ccccCChhcHHHHHHHHHHHHHhCcccCCCee
Q 003069 735 LKQLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIM--LDKILDEAGRKILCTEFAKIMQQGFAYLPGGM 812 (851)
Q Consensus 735 ~~~L~~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lp--sr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 812 (851)
.+.+-+.|.+|+..+.. .++=.+.|+|+++.++|+++-+++.+.+ ...-..+.........+.++...|-.....=.
T Consensus 22 ~~~~~~~~~~i~~~d~~-~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (138)
T 2l0w_A 22 IRKFEGQSRKFIIANAR-VENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVEIA 100 (138)
T ss_dssp HHHHTTTTSEEEEEESS-STTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEEEE
T ss_pred HHHHhcCCCCEEEEecC-CCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeEEE
Confidence 33334478888887762 0146899999999999999999999988 55544444433333444444444432222222
Q ss_pred EEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 813 CVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 813 Riss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
...+.|+.++++- .+--+.|++|...|...+|.+
T Consensus 101 ~~~~~g~~~~~~~-~~~~~~~~~g~~~~~~~~~~D 134 (138)
T 2l0w_A 101 FYRKDGSCFLCLV-DVVPVKNEDGAVIMFILNFEV 134 (138)
T ss_dssp EECTTSCEEEEEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred EECCCCCEEEEEE-EEEEEeCCCCCEEEEEEEEEe
Confidence 3467888887743 444567888998887766654
No 107
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=96.67 E-value=0.0045 Score=56.83 Aligned_cols=110 Identities=8% Similarity=-0.009 Sum_probs=77.8
Q ss_pred HHHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCC
Q 003069 732 DALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPG 810 (851)
Q Consensus 732 ~~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~ 810 (851)
++.++.++. .|.+|+..+.. |=.++|.|.++.++|+++ ++.+.+..--..+..+......+.++.+.|-...+.
T Consensus 16 ~~~~~~~~~~~~~~i~~~d~~---~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 90 (158)
T 3k3c_A 16 AEDVRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGS 90 (158)
T ss_dssp HHHHHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEEEE
T ss_pred HHHHHHHHhcCCceEEEEECC---CcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCccccc
Confidence 445666665 88888877633 578999999999999999 888888766565656666677888888877654433
Q ss_pred eeEE--cCC---CCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 811 GMCV--SSM---GRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 811 GvRi--ss~---Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
..++ ... |+..++ ...+--+.|++|...|...++.+
T Consensus 91 ~~~~~~~~~~~~g~~~~~-~~~~~pi~~~~g~~~g~~~~~~D 131 (158)
T 3k3c_A 91 EWRLQTDYDGSGVEERYF-DFVVTPRRRADGSIEGVQLIVDD 131 (158)
T ss_dssp EEEEEEESSSSCEEEEEE-EEEEEEEECTTSCEEEEEEEEEE
T ss_pred ceeEEeccCCCCcceEEE-EEEEEEeECCCCCEEEEEEEEEe
Confidence 3433 322 444444 33555677999999998887754
No 108
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=96.59 E-value=0.017 Score=51.78 Aligned_cols=103 Identities=8% Similarity=-0.076 Sum_probs=63.6
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeEEcCCCC
Q 003069 740 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGR 819 (851)
Q Consensus 740 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Gr 819 (851)
+.|++|+..+.. ..|=.++|.|+++.++|+|+-+|+++.+...-..+.........+.+..++|-...+.-....+.|+
T Consensus 7 ~~~~~i~~~d~~-g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~ 85 (132)
T 2pr5_A 7 HVRVGVVITDPA-LEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDGT 85 (132)
T ss_dssp CCCCEEEEECTT-STTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSC
T ss_pred cCCCcEEEEeCC-CCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEecCCC
Confidence 478888877654 1145899999999999999999999987654433332222233344445554332222334678999
Q ss_pred eEEEcceEEeEeecCCCCeeEEEEeec
Q 003069 820 AVSYEQAVAWKVLDDDDSNHCLAFMFM 846 (851)
Q Consensus 820 rf~i~~a~vW~l~D~~g~~~GqAa~F~ 846 (851)
.|+++-.+ =.+.|++ ..+...++.
T Consensus 86 ~~~~~~~~-~~~~~~~--~~~~~~~~~ 109 (132)
T 2pr5_A 86 MFWNELNI-DPMEIED--KTYFVGIQN 109 (132)
T ss_dssp EEEEEEEE-EEEEETT--EEEEEEEEE
T ss_pred eeeeEEEE-EeccCCC--eeEEEEEEE
Confidence 99886433 2344554 445444443
No 109
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=96.54 E-value=0.021 Score=49.42 Aligned_cols=106 Identities=6% Similarity=-0.029 Sum_probs=74.3
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeEEcCCCC
Q 003069 740 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGR 819 (851)
Q Consensus 740 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Gr 819 (851)
..|.+|+..+.. +++-.+.|+|.++.++|+++-+++.+.+...-..+..+......+.++...|-.....-....+.|+
T Consensus 10 ~~~~~i~~~d~~-~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 88 (146)
T 2v0u_A 10 RIEKNFVITDPR-LPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGK 88 (146)
T ss_dssp GSSSCEEEECTT-STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCC
T ss_pred cCCCcEEEEcCC-CCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEEEEEecCCc
Confidence 367777776652 1256899999999999999999999988776655555555455555666655443333445577888
Q ss_pred eEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 820 AVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 820 rf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
.+++. ..+-.+.|++|...|...++.+
T Consensus 89 ~~~~~-~~~~~~~~~~g~~~~~~~~~~D 115 (146)
T 2v0u_A 89 KFWNL-FHLQPMRDQKGDVQYFIGVQLD 115 (146)
T ss_dssp EEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEE-EEEEEeECCCCCEEEEEEEEee
Confidence 87774 4555677899998887776644
No 110
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=96.46 E-value=0.21 Score=50.75 Aligned_cols=149 Identities=14% Similarity=0.160 Sum_probs=89.1
Q ss_pred chHHHHHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChH
Q 003069 394 PAVLRTFSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPA 473 (851)
Q Consensus 394 ~~sl~~LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~ 473 (851)
.+...++|+..+..|-.-+.. ..+|.... ..++|+|..+...+ . ++.+ .++...+ ++||+
T Consensus 21 ~~~y~~~a~~~~~~~l~~~~~--~~~W~~~~--~~~gv~v~~~~~~~-----~--------~~~~--~k~~~~v-~~~~~ 80 (231)
T 2r55_A 21 QSMAAQMSEAVAEKMLQYRRD--TAGWKICR--EGNGVSVSWRPSVE-----F--------PGNL--YRGEGIV-YGTLE 80 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CSSCEEEE--CCSSEEEEEEECSS-----S--------SSEE--EEEEEEE-SSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC--CCCCEEEE--eCCCEEEEEEccCC-----C--------CCcE--EEEEEEE-CCCHH
Confidence 347999999999988876643 47898775 35689998876531 1 1223 3555566 89999
Q ss_pred HHHHHH--hh--hccccccccccchhhhhhccCCCCCCCCCCCCCCCcceEecccccCCCCceEEEEEecCCCCCccccc
Q 003069 474 LLVRFL--RE--HRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDVA 549 (851)
Q Consensus 474 ~vf~FL--rd--~R~eWd~~~~~~~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~ 549 (851)
.||++| .| .|.+||.. +. ....+..|. .... |++.... +.-...+
T Consensus 81 ~v~~~l~~~d~~~r~~Wd~~----~~--------------------~~~vle~i~----~~~~--i~~~~~~-~~~~~~v 129 (231)
T 2r55_A 81 EVWDCVKPAVGGLRVKWDEN----VT--------------------GFEIIQSIT----DTLC--VSRTSTP-SAAMKLI 129 (231)
T ss_dssp HHHHHHCC--CCSHHHHCTT----CS--------------------EEEEEEECS----SSEE--EEEEECC-CBTTTTB
T ss_pred HHHHHHHhhCcchhhhhccc----cc--------------------eeEEEEEcC----CCEE--EEEEEec-cccCCcc
Confidence 999999 76 89999973 11 123343332 1122 2332110 1001135
Q ss_pred cccceEEEeeccCcCCCCCCceeE-EEEeeccCCC----CCC--CCcccCceEEec
Q 003069 550 LARDMYLLQLCSGIDENTVGACAQ-LVFAPIDESF----ADD--APLLASGFRVIP 598 (851)
Q Consensus 550 ~~~~~liLQe~~~~De~~~Gs~s~-vVyAPvD~~d----s~~--v~LLPSGF~I~P 598 (851)
-+||..+|.-+ ..+++ | ++ ++.-.||-+. +.+ +.++|+||.|-|
T Consensus 130 ~~RDfv~~r~~-~~~~~--g--~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p 180 (231)
T 2r55_A 130 SPRDFVDLVLV-KRYED--G--TISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEP 180 (231)
T ss_dssp CCEEEEEEEEE-EECTT--S--CEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEE
T ss_pred CCCeEEEEEEE-EEcCC--C--EEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEE
Confidence 56888888875 34422 5 34 4566677542 233 347888998888
No 111
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=96.39 E-value=0.017 Score=60.62 Aligned_cols=107 Identities=6% Similarity=-0.041 Sum_probs=79.0
Q ss_pred hcCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeEEcCCC
Q 003069 739 WHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMG 818 (851)
Q Consensus 739 ~~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~G 818 (851)
-+.|++|+..+.. .+|=.++|+|+++.++|+|+-+|+.+.+...-..+..+.+....+.++.+.|-.....-....+.|
T Consensus 18 ~~~~~~i~~~D~~-~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG 96 (332)
T 2wkq_A 18 ERIEKNFVITDPR-LPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSG 96 (332)
T ss_dssp GGCCSEEEEECTT-STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTC
T ss_pred hcCCCcEEEecCC-CCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEEcCCC
Confidence 4578888887762 125789999999999999999999999877655555555555555566666543333334567899
Q ss_pred CeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 819 RAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 819 rrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
+.++++ ..+--+.|++|...|...++.+
T Consensus 97 ~~~~~~-~~~~pi~d~~g~~~~~v~~~~D 124 (332)
T 2wkq_A 97 KKFWNL-FHLQPMRDQKGDVQYFIGVQLD 124 (332)
T ss_dssp CEEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred CEEEEe-eEEEEeEcCCCCEEEEEEEecc
Confidence 999885 4667788999999998887754
No 112
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=96.35 E-value=0.013 Score=51.40 Aligned_cols=102 Identities=10% Similarity=0.082 Sum_probs=70.0
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHH-hCcccCCCeeEEcCCC
Q 003069 740 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQ-QGFAYLPGGMCVSSMG 818 (851)
Q Consensus 740 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~-qG~~~~y~GvRiss~G 818 (851)
+++++|+.++. |=.|+|.|.++.++|+|+-+|+.+.+..--..|.+++.-...+.++.+ .|-...+.=--..+.|
T Consensus 10 ~~~d~i~~~d~----~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~~dG 85 (121)
T 3f1p_B 10 QPTRFISRHNI----EGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRFRSKNQ 85 (121)
T ss_dssp CCCEEEEEECT----TSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEEECTTS
T ss_pred CCCceEEEECC----CceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEEEEecCC
Confidence 36666666654 468999999999999999999999887666667777766666666653 3322222112247889
Q ss_pred CeEEEcceEEeEeecC-CCCeeEEEEeec
Q 003069 819 RAVSYEQAVAWKVLDD-DDSNHCLAFMFM 846 (851)
Q Consensus 819 rrf~i~~a~vW~l~D~-~g~~~GqAa~F~ 846 (851)
+.++++- .+--+.|+ +|...+...++.
T Consensus 86 ~~~w~~~-~~~~~~~~~~g~~~~iv~~~~ 113 (121)
T 3f1p_B 86 EWLWMRT-SSFTFQNPYSDEIEYIICTNT 113 (121)
T ss_dssp CEEEEEE-EEEEECCTTCCCCCEEEEEEE
T ss_pred CEEEEEE-EEEEEECCCCCceeEEEEEeE
Confidence 9998863 34445676 687777665554
No 113
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=96.27 E-value=0.044 Score=54.47 Aligned_cols=105 Identities=10% Similarity=-0.019 Sum_probs=72.4
Q ss_pred HhcCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeEEcCC
Q 003069 738 LWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSM 817 (851)
Q Consensus 738 L~~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~ 817 (851)
+-+.+.+|+..+. +-.++|.|.++.++++|+-+|+++.+.+.-..+....+-...+.+..+.|-.....=....+.
T Consensus 117 ~~~~~~~i~~~d~----~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~ 192 (227)
T 3ewk_A 117 MDANSEMILLTDR----AGRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLLNRRRT 192 (227)
T ss_dssp HHTCCSEEEEECT----TSCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEEC
T ss_pred HhcCcCeEEEEcC----CCcEEEEchHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCC
Confidence 3457777777653 568999999999999999999999877665544444444444555555544333344456677
Q ss_pred CC------eEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 818 GR------AVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 818 Gr------rf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
|+ .|+++- .+=-+.|++|...|-..++.+
T Consensus 193 G~~~~dg~~~~~~~-~~~pi~d~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 193 GPAPHDAEDYWAEI-STTPIHTDGNGLVGYVQIQHD 227 (227)
T ss_dssp CSSSSCEEEEEEEE-EEEEEECSSSCEEEEEEEEEC
T ss_pred CCcCcccceEEEEE-EEEEEECCCCCEEEEEEEecC
Confidence 76 677643 455678999999988777653
No 114
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=96.10 E-value=0.036 Score=48.48 Aligned_cols=83 Identities=8% Similarity=0.043 Sum_probs=59.6
Q ss_pred CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCC-Ce---eEEcC
Q 003069 741 HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLP-GG---MCVSS 816 (851)
Q Consensus 741 ~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y-~G---vRiss 816 (851)
+|++|+..+. +=.+.|.|.++.+||+|+-+|+++.+...-..+..+......+......|-.... .+ ....+
T Consensus 2 ~~d~i~~~d~----~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (119)
T 2vv6_A 2 IPDAMIVIDG----HGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRR 77 (119)
T ss_dssp CCCEEEEEET----TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECT
T ss_pred CcceEEEECC----CCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeC
Confidence 5677777654 4689999999999999999999999876655555555555667777666653211 12 23579
Q ss_pred CCCeEEEcceE
Q 003069 817 MGRAVSYEQAV 827 (851)
Q Consensus 817 ~Grrf~i~~a~ 827 (851)
.|+.|+++-.+
T Consensus 78 dG~~~~~~~~~ 88 (119)
T 2vv6_A 78 DGTTFPMHLSI 88 (119)
T ss_dssp TSCEEEEEEEE
T ss_pred CCCEEEEEEEE
Confidence 99999987543
No 115
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=96.08 E-value=0.028 Score=54.19 Aligned_cols=108 Identities=13% Similarity=0.060 Sum_probs=75.4
Q ss_pred HHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCccc-----
Q 003069 734 LLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAY----- 807 (851)
Q Consensus 734 ~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~----- 807 (851)
+++.++. .|++|+.-+. |=.++|.|+++.++++++-+|+++-+..--.++ .++.-.+.+.+|.+.|--.
T Consensus 23 ~l~~il~~~~~gi~v~D~----~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~~~~~ 97 (152)
T 3mxq_A 23 LLSELLDQLSFALCIVRN----DYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFSSWE 97 (152)
T ss_dssp HHHHHHHHHCCEEEEEET----TSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEEEECC
T ss_pred HHHHHHhcCCCCEEEEcC----CCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCceeeecc
Confidence 3455544 6888887664 478999999999999999999999887766655 5555666788888877421
Q ss_pred -------CCCeeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 808 -------LPGGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 808 -------~y~GvRiss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
...+-.+++.|+.+ +-+.+++-|.|++|.+.|.++++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~-~~~~ti~Pl~d~~G~v~gv~~ii~D 143 (152)
T 3mxq_A 98 QKPHLLPFKSSRPVSGEEEQM-YQNLEVIPIHSEDGTIEHVCLCVYD 143 (152)
T ss_dssp SSSCSSCC----------CCE-EEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred cccccccccccCCCCCCCcEE-EEEEEEEEEECCCCCEEEEEEEEEE
Confidence 11122345566554 4478999999999999999988755
No 116
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=96.07 E-value=0.02 Score=57.05 Aligned_cols=93 Identities=8% Similarity=-0.057 Sum_probs=67.1
Q ss_pred CCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeEEcCCCCeEEEcceEEeEeec
Q 003069 754 ASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRAVSYEQAVAWKVLD 833 (851)
Q Consensus 754 ~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i~~a~vW~l~D 833 (851)
.+=.++|+|.++.+||+|+.+|+.+.+.+.-..+...++....+.+....|-...+.-....+.|+.|+++- .+=-+.|
T Consensus 7 ~~g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~-~~~p~~d 85 (227)
T 3ewk_A 7 LQGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDS-TIVPLMD 85 (227)
T ss_dssp TTCBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEE-EEEEEEC
T ss_pred CCCcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeee-EEEEEEc
Confidence 456799999999999999999999998776554433333444444555566554444556789999999854 5556789
Q ss_pred CCCCeeEEEEeecC
Q 003069 834 DDDSNHCLAFMFMN 847 (851)
Q Consensus 834 ~~g~~~GqAa~F~~ 847 (851)
++|...|..+++.+
T Consensus 86 ~~g~~~~~~~~~~D 99 (227)
T 3ewk_A 86 NAGKPRQYISIRRD 99 (227)
T ss_dssp SSSCEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEe
Confidence 99999887766643
No 117
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=95.98 E-value=0.062 Score=45.18 Aligned_cols=109 Identities=10% Similarity=-0.010 Sum_probs=70.5
Q ss_pred HHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccc--cccCChhcHHHHHHHHHHHHHhCcccCC
Q 003069 733 ALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIML--DKILDEAGRKILCTEFAKIMQQGFAYLP 809 (851)
Q Consensus 733 ~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lps--r~sae~~~r~er~~lL~~v~~qG~~~~y 809 (851)
..++.++. .|.+|+..+.+ +=.+.|.|.++.++|+++-+++.+.+. .....+.++..-...+.++. .|-...
T Consensus 11 ~~~~~~~~~~~~~i~~~d~~---~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~- 85 (125)
T 3eeh_A 11 RRVRELTEATNDILWEFTAD---LSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQSLM-DGESAD- 85 (125)
T ss_dssp HHHHHHHSCCCCEEEEEETT---SSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHHHH-TTCCEE-
T ss_pred HHHHHHHhcCCceEEEEEcC---CCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHHHH-cCCCcc-
Confidence 44566655 67776666543 258999999999999999999998873 33345555555555555533 332221
Q ss_pred CeeE-EcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 810 GGMC-VSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 810 ~GvR-iss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
.-+| ..+.|+.++++- .+--+.|++|...|...++.+
T Consensus 86 ~e~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~~~~~~~D 123 (125)
T 3eeh_A 86 VECRVNATEEYQRWVWI-QGEPITNDAGETVRVAGFARD 123 (125)
T ss_dssp EEEEECGGGTTCEEEEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEE-ecEEEECCCCCEEEEEEEEEe
Confidence 1233 346687777753 455577889998887766643
No 118
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=95.97 E-value=0.052 Score=46.20 Aligned_cols=83 Identities=22% Similarity=0.163 Sum_probs=56.8
Q ss_pred HHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeE
Q 003069 735 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC 813 (851)
Q Consensus 735 ~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 813 (851)
++.++ +.|++|+..+.+ =.++|.|.++.++|+|+-+++.+++...-.++..... +..+.+.+. ..+.-..
T Consensus 15 ~~~~~~~~~~~i~~~d~~----g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~----~~~~~~~~~-~~~e~~~ 85 (118)
T 3olo_A 15 AHYLINNAVEASFCLGDN----WQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD----WEEIRQKNN-YTFKTRY 85 (118)
T ss_dssp HHHHHHHCSSEEEEECTT----SBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC----HHHHHHHSE-EEEEEEE
T ss_pred HHHHHhcCCceEEEECCC----CcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH----HHHHHhcCc-EEEEEEE
Confidence 34454 488888887654 5899999999999999999999998765443332222 334444443 2344455
Q ss_pred EcCCCCeEEEcce
Q 003069 814 VSSMGRAVSYEQA 826 (851)
Q Consensus 814 iss~Grrf~i~~a 826 (851)
..+.|+.++++-.
T Consensus 86 ~~~~g~~~~~~~~ 98 (118)
T 3olo_A 86 RSQSGRIFLVEMS 98 (118)
T ss_dssp ECTTCCEEEEEEE
T ss_pred EccCCCEEEEEEE
Confidence 6789999888643
No 119
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=95.95 E-value=0.029 Score=48.50 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=62.4
Q ss_pred HHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCe
Q 003069 733 ALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGG 811 (851)
Q Consensus 733 ~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 811 (851)
..++.++. .|++|+..+.+ =.++|.|+++.++|+++-+++.+.+..--.++...+.......++...|-..
T Consensus 19 ~~~~~i~~~~~~~i~~~d~~----g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 90 (125)
T 3fc7_A 19 KKFESLVSDSPDGIVHLTTN----GTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT---- 90 (125)
T ss_dssp -------CCSCCEEEEEETT----SBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE----
T ss_pred HHHHHHHhcCCCeEEEEcCC----CeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE----
Confidence 34556655 78888887654 6899999999999999999999999877775544555555556666666422
Q ss_pred eEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 812 MCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 812 vRiss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
......| ..+++ ..+-.+ .++|...|...+|.+
T Consensus 91 ~~~~~~~-~~~~~-~~~~p~-~~~~~~~~~~~~~~D 123 (125)
T 3fc7_A 91 RSEDAVG-GRHYH-NQYIPV-DSHRKSDTFQLVSRD 123 (125)
T ss_dssp EEEEEET-TEEEE-EEEEES-STTTTTTEEEEEEEE
T ss_pred EeEcCCC-cEEEE-EEEEeE-ecCCCeEEEEEEEec
Confidence 2222331 33333 222234 344665666666543
No 120
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=95.88 E-value=0.029 Score=48.27 Aligned_cols=99 Identities=14% Similarity=0.059 Sum_probs=69.2
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeEEcCCCC
Q 003069 740 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGR 819 (851)
Q Consensus 740 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Gr 819 (851)
+.|++|+..+.+ =.++|+|.++.++|+++-+++.+.+..--..+..+......+.++...+.. .+.-....+.|+
T Consensus 7 ~~~~~i~~~d~~----g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~ 81 (126)
T 3mjq_A 7 TIEDMILIINRE----GRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEKKEGT 81 (126)
T ss_dssp GCSSEEEEEETT----SBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEECTTSC
T ss_pred hCCceEEEEeCC----CcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEccCCC
Confidence 367888777654 689999999999999999999999877666677777777888888776655 223233467898
Q ss_pred eEEEcceEEeEeecCCCCeeEEEEeec
Q 003069 820 AVSYEQAVAWKVLDDDDSNHCLAFMFM 846 (851)
Q Consensus 820 rf~i~~a~vW~l~D~~g~~~GqAa~F~ 846 (851)
.++++- .+..+.+ ++ ..|...++.
T Consensus 82 ~~~~~~-~~~~~~~-~~-~~~~~~~~~ 105 (126)
T 3mjq_A 82 SIPAKA-RIWQGKW-HN-EPCLFAIIK 105 (126)
T ss_dssp EEEEEE-EEEEEES-SS-SEEEEEEEE
T ss_pred EEEEEE-EEEeeeE-CC-ceEEEEEEE
Confidence 888753 3333333 22 345444443
No 121
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=95.87 E-value=0.024 Score=48.47 Aligned_cols=108 Identities=9% Similarity=-0.069 Sum_probs=70.3
Q ss_pred HHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcc--cccccCChhcHHHHHHHHHHHHHhCcccCCCe
Q 003069 735 LKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDI--MLDKILDEAGRKILCTEFAKIMQQGFAYLPGG 811 (851)
Q Consensus 735 ~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~l--psr~sae~~~r~er~~lL~~v~~qG~~~~y~G 811 (851)
++.+.. +|.+|...+.+ -.++|.|.++.++|+++-+++.+. .......|.+++.-...+.++.+.|-.....-
T Consensus 9 l~~~~~~~~~~i~~~d~~----~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~ 84 (125)
T 3nja_A 9 LHTAESDAGIGSWVLHME----SGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDVEY 84 (125)
T ss_dssp --------CCEEEEEETT----TTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHhCCeeEEEEEcC----CCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCceEEE
Confidence 444443 67777666544 568899999999999999998872 22233456677777777888888775433222
Q ss_pred eEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 812 MCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 812 vRiss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
--..+.|+.++++-... -+.|++|...|...++.+
T Consensus 85 ~~~~~~g~~~~~~~~~~-~~~~~~g~~~~~~g~~~D 119 (125)
T 3nja_A 85 RIVRPDGQVRELLERNH-IQRQASGQVDHLWGTVID 119 (125)
T ss_dssp EEECTTSCEEEEEEEEE-EEECTTSCEEEEEEEEEE
T ss_pred EEECCCCCEEEEEEeeE-EEECCCCCEEEEEEEEEe
Confidence 22467888888765433 567889998887776654
No 122
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=95.78 E-value=0.042 Score=47.69 Aligned_cols=99 Identities=10% Similarity=0.078 Sum_probs=64.7
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhC-cccCCCeeEEcCCC
Q 003069 740 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQG-FAYLPGGMCVSSMG 818 (851)
Q Consensus 740 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG-~~~~y~GvRiss~G 818 (851)
+.+++|+.++.+ =.+.|.|+++.++|+|+-+|+.+.+..--..|.+++.....+.++.+.+ -...+.---+.+.|
T Consensus 11 ~~~~~i~~~d~~----g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~~dG 86 (121)
T 2kdk_A 11 KPTEFITRFAVN----GKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRAKDG 86 (121)
T ss_dssp CSSEEEEEECTT----SBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEECSSS
T ss_pred CCccEEEEECCC----eeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEcCC
Confidence 467777776654 5899999999999999999999987654445666666666667666643 21111111257899
Q ss_pred CeEEEcceEEeEeecCCC-CeeEEEE
Q 003069 819 RAVSYEQAVAWKVLDDDD-SNHCLAF 843 (851)
Q Consensus 819 rrf~i~~a~vW~l~D~~g-~~~GqAa 843 (851)
+.++++- .+--+.|++| ...+...
T Consensus 87 ~~~~~~~-~~~~~~d~~~~~~~~~v~ 111 (121)
T 2kdk_A 87 SFVTLKS-QWFSFTNPDTKELEYIVS 111 (121)
T ss_dssp CEEEEEE-EEEEEECCSSSCEEEEEE
T ss_pred CEEEEEE-EEEEEECCCCCeeeEEEE
Confidence 9988853 3334567664 4443333
No 123
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=95.63 E-value=0.042 Score=46.80 Aligned_cols=110 Identities=14% Similarity=0.068 Sum_probs=74.8
Q ss_pred HHHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhccccc--ccCChhcHHHHHHHHHHHHHhCcccC
Q 003069 732 DALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLD--KILDEAGRKILCTEFAKIMQQGFAYL 808 (851)
Q Consensus 732 ~~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr--~sae~~~r~er~~lL~~v~~qG~~~~ 808 (851)
++.++.+.. .|.+|...+. +-.++|.|.++.++|+++-+++.+.+.. .-..|.+++.-.+.+.++.+.|-...
T Consensus 3 ~~~~~~l~~~~~~~i~~~d~----~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~ 78 (118)
T 3icy_A 3 AEELQALVDNIPAAIYHLDV----SGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLT 78 (118)
T ss_dssp HHHHHHHHTTCCCCCEEECT----TSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEE
T ss_pred HHHHHHHHhcCCceEEEEEc----CCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCce
Confidence 455666765 6666655544 4678999999999999999998776542 23457777777777777777665433
Q ss_pred CCeeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeec
Q 003069 809 PGGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFM 846 (851)
Q Consensus 809 y~GvRiss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~ 846 (851)
..---+.+.|+..+++. ..=-+.|++|...|...++.
T Consensus 79 ~e~r~~~~~g~~~w~~~-~~~~~~~~~g~~~~~~g~~~ 115 (118)
T 3icy_A 79 LVYRIVTPEGKLHWIED-HMRSSFSDDGLFSGIDGILC 115 (118)
T ss_dssp EEEEEECTTCCEEEEEE-EEEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEE-EEEEEECCCCCEEEEEEEEE
Confidence 33223467888877754 33356789999887655553
No 124
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.63 E-value=0.032 Score=48.14 Aligned_cols=104 Identities=12% Similarity=0.085 Sum_probs=65.5
Q ss_pred HHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeE
Q 003069 735 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC 813 (851)
Q Consensus 735 ~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 813 (851)
...++ +.|.+|+..+.+ =.+.|.|++|.++|+++.+++.+.+...-..+... ....+.++.+.|-.....-++
T Consensus 9 ~~~il~~~~~~i~~~D~~----g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 82 (115)
T 3b33_A 9 PSAILNNMVTATLILDDG----LAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVT 82 (115)
T ss_dssp HHHHHHHCSSEEEEECTT----CBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEE
T ss_pred HHHHHhhcCceEEEECCC----CcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceE
Confidence 33344 489999888765 47999999999999999999999876543332221 123455566555321111223
Q ss_pred EcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 814 VSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 814 iss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
+.+.|+.++++ ..+-.+.| +|. .|.-++|.+
T Consensus 83 ~~~~g~~~~~~-~~~~pi~~-~g~-~~~l~~~~D 113 (115)
T 3b33_A 83 FVVDGRPLMLE-VTVSPITW-QRQ-LMLLVEMRK 113 (115)
T ss_dssp EEETTEEEEEE-EEEEEEEE-TTE-EEEEEEEEE
T ss_pred EecCCCEEEEE-EEEEEeec-CCc-eEEEEEEEe
Confidence 32578877663 45556677 776 566666643
No 125
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=94.84 E-value=0.1 Score=45.59 Aligned_cols=85 Identities=15% Similarity=0.047 Sum_probs=50.3
Q ss_pred HHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHh--cccccccCChhcHHHHHHHHHHHHHhCcccCC
Q 003069 733 ALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQ--DIMLDKILDEAGRKILCTEFAKIMQQGFAYLP 809 (851)
Q Consensus 733 ~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~--~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y 809 (851)
+.++.++. .|++|+..+.. =.+.|.|+++.++|+|+-+|+. +.+..--.. ++......+.+....+ ...+
T Consensus 17 ~~~~~l~e~~~~~i~~~d~~----g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~ 89 (126)
T 3bwl_A 17 SRLEALFENSPDMIDVLDAD----GTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQLSGFSVDE-RRKF 89 (126)
T ss_dssp HHHHHHHHHCSSEEEEECTT----CBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHHHTCCTTC-EEEE
T ss_pred HHHHHHHhhCCcEEEEEcCC----CCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHHHHHhcCC-Ccce
Confidence 34566665 88888876544 5799999999999999999994 443321122 2222222221111111 1112
Q ss_pred CeeEEcCCCCeEEEc
Q 003069 810 GGMCVSSMGRAVSYE 824 (851)
Q Consensus 810 ~GvRiss~Grrf~i~ 824 (851)
......+.|+.|+++
T Consensus 90 e~~~~~~dG~~~~~~ 104 (126)
T 3bwl_A 90 EGLYERRDGSTMSVE 104 (126)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEEEeCCCCEEEEE
Confidence 233458899999886
No 126
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=94.52 E-value=1.1 Score=45.38 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=73.0
Q ss_pred CCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHHHhh--hccccccccccch
Q 003069 417 DDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADYGVDAY 494 (851)
Q Consensus 417 ~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~FLrd--~R~eWd~~~~~~~ 494 (851)
..+|..... .++|+|..+... + . .+-+. ++..-+ ++||+.||++|.| .|.+||.. +
T Consensus 42 ~~~W~~~~~--~~gv~vy~~~~~----~-~--------~~~~~--k~~~~v-~~~~~~v~~~l~d~~~r~~Wd~~----~ 99 (224)
T 1jss_A 42 EDEWRVAKK--AKDVTVWRKPSE----E-F--------NGYLY--KAQGVM-DDVVNNVIDHIRPGPWRLDWDRL----M 99 (224)
T ss_dssp GGGCEEEEE--ETTEEEEEEECS----S-S--------SSEEE--EEEEEE-SSCHHHHHHHHSSSTTHHHHCSS----E
T ss_pred CCCCEEEEE--CCCEEEEEEecc----C-C--------CceEE--EEEEEE-eCCHHHHHHHHhCcccccccccc----e
Confidence 568986643 378999988543 1 1 23333 445556 8999999999998 89999973 1
Q ss_pred hhhhhccCCCCCCCCCCCCCCCcceEecccccCCCCceEEEEEecCCCCCccccccccceEEEeeccCcCCCCCCceeEE
Q 003069 495 SAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDVALARDMYLLQLCSGIDENTVGACAQL 574 (851)
Q Consensus 495 s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~~~~De~~~Gs~s~v 574 (851)
. + .+.+-+| +....|--........ ..+-+||..++...- .+ ..| .++
T Consensus 100 ~-----~---------------~~vle~i----d~~~~I~y~~~~~~~~---~~v~~RDfv~~r~~~-~~--~~~--~vi 147 (224)
T 1jss_A 100 T-----S---------------LDVLEHF----EENCCVMRYTTAGQLL---NIISPREFVDFSYTV-GY--EEG--LLS 147 (224)
T ss_dssp E-----E---------------EEEEEEC----STTEEEEEEEECCBTT---TTBCCEEEEEEEEEE-EE--TTE--EEE
T ss_pred e-----e---------------EEEEEEc----CCCeEEEEEEcccccC---CCCCCCeEEEEEEEE-Ec--CCe--EEE
Confidence 1 1 2344333 2222332222221100 114567888887632 23 122 455
Q ss_pred EEeeccCCC--CCC--CCcccCceEEec
Q 003069 575 VFAPIDESF--ADD--APLLASGFRVIP 598 (851)
Q Consensus 575 VyAPvD~~d--s~~--v~LLPSGF~I~P 598 (851)
+.-.||-++ +.+ +.++++||.|.|
T Consensus 148 ~~~Sv~hp~~~~g~VR~~~~~~g~~i~p 175 (224)
T 1jss_A 148 CGVSVEWSETRPEFVRGYNHPCGWFCVP 175 (224)
T ss_dssp EEEECCCCCCCTTSEECEECSEEEEEEE
T ss_pred EEeeeecCCCCCCCEEEEecccEEEEEE
Confidence 666676443 233 347788888888
No 127
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=94.43 E-value=1.4 Score=45.40 Aligned_cols=174 Identities=22% Similarity=0.324 Sum_probs=96.8
Q ss_pred CCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHH-HHHHhhhccccccccccch
Q 003069 416 LDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALL-VRFLREHRSEWADYGVDAY 494 (851)
Q Consensus 416 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~v-f~FLrd~R~eWd~~~~~~~ 494 (851)
...+|..... .++|+|..++..+ +. .+-.-++..-+ +.+|+.+ +++|.| |.+||.. +
T Consensus 48 ~~~gW~~~~~--~~gi~V~~k~~~~---~~-----------~~~~~K~~~~v-~~~~~~v~~~ll~d-r~~Wd~~----~ 105 (237)
T 2pso_A 48 KFKGWVTCSS--TDNTDLAFKKVGD---GN-----------PLKLWKASVEV-EAPPSVVLNRVLRE-RHLWDED----F 105 (237)
T ss_dssp HCCSCEEECC--SSSCEEEEECCCS---SC-----------CCCEEEEEEEE-SSCHHHHHHHHHHC-GGGTCTT----B
T ss_pred CCCCCEEEec--CCCeEEEEEEcCC---CC-----------CcEEEEEEEEE-cCChHHHHHHHHhh-hhhHHhh----h
Confidence 4568987743 5789999988531 21 12233556667 5666555 578888 9999973 1
Q ss_pred hhhhhccCCCCCCCCCCCCCCCcceEecccccCCCCceEEEEEecCCCCCccccccccceEEEeeccCcCCCCCCceeEE
Q 003069 495 SAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDVALARDMYLLQLCSGIDENTVGACAQL 574 (851)
Q Consensus 495 s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~~~~De~~~Gs~s~v 574 (851)
. + .+++-.|. ..+.|--....... .+-+||..++.-. ..|. ..|+ -.+
T Consensus 106 ~-----~---------------~~vle~id----~~~~I~y~~~~~p~-----p~~~RDfv~~r~~-r~~~-~~g~-~vi 153 (237)
T 2pso_A 106 V-----Q---------------WKVVETLD----RQTEIYQYVLNSMA-----PHPSRDFVVLRTW-KTDL-PKGM-CTL 153 (237)
T ss_dssp C-----C---------------CEEEEEEE----TTEEEEEEEECCSS-----SCCCEEEEEEEEE-ESCC-GGGC-EEE
T ss_pred c-----e---------------EEEEEEcC----CCcEEEEEEecCCC-----CcCCeEEEEEEEE-EEEC-CCCE-EEE
Confidence 1 1 34444442 22223222332221 2456788887763 2331 2253 223
Q ss_pred EEeeccCCC-C--CC--CCcccCceEEecCCcccccccCCCCcccccccccccccCCCCCCCCCCCCCCCCCCCceEEEE
Q 003069 575 VFAPIDESF-A--DD--APLLASGFRVIPLDSKAAMQQDGPAASRTLDLASALEVGSGGARPAGGTELSNYNSRSVLTIA 649 (851)
Q Consensus 575 VyAPvD~~d-s--~~--v~LLPSGF~I~P~~~~~~~~~Dg~~~~~tldlas~le~~~~~~~~~~~~~~~~~~~gSlLTva 649 (851)
+...|+-++ | .+ +..+++||.|-|++ .++|.+|.-
T Consensus 154 ~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~----------------------------------------~~~t~vt~~ 193 (237)
T 2pso_A 154 VSLSVEHEEAQLLGGVRAVVMDSQYLIEPCG----------------------------------------SGKSRLTHI 193 (237)
T ss_dssp EEEECCCTTCCCCSSEECCEEEEEEEEEECS----------------------------------------TTCEEEEEE
T ss_pred EEEcccCCCCCCCCcEEEEEeccEEEEEECC----------------------------------------CCCEEEEEE
Confidence 344555431 1 12 45677888888720 145778877
Q ss_pred eeecccccccchHHHHHhhhHhHHHHHHHHHHHHhCC
Q 003069 650 FQFTFENHMRDNVAAMARQYVRSVVGSVQRVAMAISP 686 (851)
Q Consensus 650 FQ~l~~~~~~~sVa~~~~~~v~~v~~tvqri~~AL~~ 686 (851)
+|+=........+ +.-+......++.+++.++..
T Consensus 194 ~~~Dp~G~iP~~l---n~~~~~~~~~~l~~LR~~~~~ 227 (237)
T 2pso_A 194 CRIDLKGHSPEWY---SKGFGHLCAAEVARIRNSFQP 227 (237)
T ss_dssp EEECCSSSCTTTT---TTHHHHHHHHHHHHHHHTTSC
T ss_pred EEeCCCCCchHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 7776665433433 344455566789999999853
No 128
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=94.31 E-value=0.15 Score=45.95 Aligned_cols=98 Identities=11% Similarity=-0.044 Sum_probs=64.0
Q ss_pred HHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCccc----CC
Q 003069 735 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAY----LP 809 (851)
Q Consensus 735 ~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~----~y 809 (851)
++.++ +.|.+|+..+.. =.++|.|.++.++|+++.+++.+.+...-..+..+......+..+...+... ..
T Consensus 42 ~~~~l~~~~~~i~~~d~~----g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (167)
T 1v9y_A 42 FFPALEQNMMGAVLINEN----DEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSR 117 (167)
T ss_dssp HHHHHHTCSSEEEEECTT----SBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC----------C
T ss_pred HHHHHHhCCCCEEEECCC----CcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCcccccce
Confidence 45554 478888776644 5899999999999999999999998877776666555556666666655331 22
Q ss_pred CeeEEcCCCCeEEEcceEEeEeecCCCCe
Q 003069 810 GGMCVSSMGRAVSYEQAVAWKVLDDDDSN 838 (851)
Q Consensus 810 ~GvRiss~Grrf~i~~a~vW~l~D~~g~~ 838 (851)
.-....+.|+.++++-.. -.+ +++|..
T Consensus 118 ~~~~~~~~g~~~~~~~~~-~~~-~~~g~~ 144 (167)
T 1v9y_A 118 ELQLEKKDGSKIWTRFAL-SKV-SAEGKV 144 (167)
T ss_dssp EEEEECTTSCEEEEEEEE-EEE-EETTEE
T ss_pred EEEEEcCCCcEEEEEEEE-EEE-ecCCCE
Confidence 223356778887775332 233 555654
No 129
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=94.16 E-value=1.7 Score=43.81 Aligned_cols=192 Identities=13% Similarity=0.158 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHH
Q 003069 397 LRTFSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLV 476 (851)
Q Consensus 397 l~~LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf 476 (851)
-.++++.-...+..-+. ..++|.... ...++|.|..++.. + .|.++ ++...+ ++||+.||
T Consensus 12 y~~~~~~~~~~~l~~~~--~~~gW~~~~-~~~~gv~vy~~~~~----~----------~g~~~--k~~~~v-~~~~~~v~ 71 (221)
T 3p0l_A 12 YLQQGEEAMQKALGILS--NQEGWKKES-QQDNGDKVMSKVVP----D----------VGKVF--RLEVVV-DQPMERLY 71 (221)
T ss_dssp HHHHHHHHHHHHHHHHH--SCTTCEEEE-ECTTSCEEEEEECS----S----------SCEEE--EEEEEE-SSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCCCeEee-ecCCCcEEEEEEcC----C----------CceEE--EEEEEE-cCCHHHHH
Confidence 34455555555544443 357898773 12467788888742 1 13233 555667 89999999
Q ss_pred HHHh-h--hccccccccccchhhhhhccCCCCCCCCCCCCCCCcceEecccccCCCCceEEEEEecCCCCCccccccccc
Q 003069 477 RFLR-E--HRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDVALARD 553 (851)
Q Consensus 477 ~FLr-d--~R~eWd~~~~~~~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~ 553 (851)
++|. | .|.+||.. +. ..+++-.+.. +.. |+..... ..--..+-+||
T Consensus 72 ~~l~~d~~~r~~Wd~~----~~--------------------~~~vle~~~~----~t~--I~y~~~~-~~~~~~v~~RD 120 (221)
T 3p0l_A 72 EELVERMEAMGEWNPN----VK--------------------EIKVLQKIGK----DTF--ITHELAA-EAAGNLVGPRD 120 (221)
T ss_dssp HHHTTTGGGTTTSCTT----CS--------------------EEEEEEECSS----SEE--EEEEEEC-C---CCSCCEE
T ss_pred HHHHhccchhhhcCcc----hh--------------------eEEEEEecCC----CeE--EEEEeec-cccCCccCCce
Confidence 9995 4 89999973 11 1344444422 222 3332100 00001244678
Q ss_pred eEEEeeccCcCCCCCCceeEEEE-eeccCC----CCCC--CCcccCceEEecCCcccccccCCCCcccccccccccccCC
Q 003069 554 MYLLQLCSGIDENTVGACAQLVF-APIDES----FADD--APLLASGFRVIPLDSKAAMQQDGPAASRTLDLASALEVGS 626 (851)
Q Consensus 554 ~liLQe~~~~De~~~Gs~s~vVy-APvD~~----ds~~--v~LLPSGF~I~P~~~~~~~~~Dg~~~~~tldlas~le~~~ 626 (851)
..+|.... .+ .| .+++. -.|+-+ .+.+ +.++++||.|-|++.+
T Consensus 121 fv~~r~~~-~~---~~--~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~------------------------ 170 (221)
T 3p0l_A 121 FVSVRCAK-RR---GS--TCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAGS------------------------ 170 (221)
T ss_dssp EEEEEEEE-EC---SS--CEEECCEECCCTTSCCCTTSEECEECSCEEEEEEETTE------------------------
T ss_pred EEEEEEEE-Ec---CC--eEEEEEEeccCCCCCCCCCeEEEeccceEEEEEECCCC------------------------
Confidence 88877642 33 13 24443 445533 1333 3578899999882100
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEeeecccccccchHHHHHhhhHhHHHHHHHHHHHHhC
Q 003069 627 GGARPAGGTELSNYNSRSVLTIAFQFTFENHMRDNVAAMARQYVRSVVGSVQRVAMAIS 685 (851)
Q Consensus 627 ~~~~~~~~~~~~~~~~gSlLTvaFQ~l~~~~~~~sVa~~~~~~v~~v~~tvqri~~AL~ 685 (851)
..+|.+|.-+|+=.......++... -...++..+++.++.++.
T Consensus 171 --------------~~~t~vt~~~~~Dp~G~iP~~lvn~--~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 171 --------------PSKTKLTWLLSIDLKGWLPKSIINQ--VLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp --------------EEEEEEEEEECEECCSSCCHHHHHH--HHHHHHHHHHHHHHHHTC
T ss_pred --------------CCcEEEEEEEEecCCCCCCHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 1257888877776665433333221 113556678888888886
No 130
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=94.15 E-value=0.07 Score=49.41 Aligned_cols=87 Identities=16% Similarity=0.180 Sum_probs=55.4
Q ss_pred HHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCc------cc
Q 003069 735 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGF------AY 807 (851)
Q Consensus 735 ~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~------~~ 807 (851)
++.++ ..+++|+..+.+ =.++|+|.||.+||+|+-+++++.+...-..+..++.-..++.+..+.|- ..
T Consensus 9 l~~i~~~~~d~i~~~D~~----g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (129)
T 3mfx_A 9 IELFIQHLTEAMILVNAN----GFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQH 84 (129)
T ss_dssp HHHHHTTCSSEEEEEETT----SBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSCE
T ss_pred HHHHHhcCCceEEEECCC----CEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccCC
Confidence 44444 488999887765 58999999999999999999999987655555554433333333322211 00
Q ss_pred C-CCeeEEcCCCCeEEEcc
Q 003069 808 L-PGGMCVSSMGRAVSYEQ 825 (851)
Q Consensus 808 ~-y~GvRiss~Grrf~i~~ 825 (851)
. ..-....+.|+.|+++-
T Consensus 85 ~~~E~~~~rkdG~~~~vel 103 (129)
T 3mfx_A 85 PAQETTLICASGKAKDVEL 103 (129)
T ss_dssp EEEEEEEECTTSCEEEEEE
T ss_pred CceEEEEEcCCCCEEEEEE
Confidence 0 11123477999999964
No 131
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=94.07 E-value=0.22 Score=42.93 Aligned_cols=90 Identities=12% Similarity=0.059 Sum_probs=62.6
Q ss_pred CCeeEcccHHHHHhhccCHHHHhcccc-cccCChhcHHHHHHHHHHHHHhCcccCCCeeE-EcCCCCeEEEcceEEeEee
Q 003069 755 SPVFTFANQAGLDMLETTLVALQDIML-DKILDEAGRKILCTEFAKIMQQGFAYLPGGMC-VSSMGRAVSYEQAVAWKVL 832 (851)
Q Consensus 755 dP~F~YaN~aAL~l~e~~w~el~~lps-r~sae~~~r~er~~lL~~v~~qG~~~~y~GvR-iss~Grrf~i~~a~vW~l~ 832 (851)
+-.|.|.|.+..++|+|+-+++.+... ..-..|.+|+.-.+.+.++.+.|-..... .| +.+.|+..+++. ..--+.
T Consensus 13 ~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e-~r~~~~dG~~~w~~~-~~~~~~ 90 (115)
T 3h9w_A 13 TMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEAD-YRALHRDGHYVWIRD-VVHVVR 90 (115)
T ss_dssp TTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEE-EEEECTTSCEEEEEE-EEEEEE
T ss_pred CCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEE-EEEEcCCCCEEEEEE-EEEEEE
Confidence 457999999999999999999988211 22346777777777777887777522211 23 367898888854 444457
Q ss_pred cCCCCeeEEEEeec
Q 003069 833 DDDDSNHCLAFMFM 846 (851)
Q Consensus 833 D~~g~~~GqAa~F~ 846 (851)
|++|...+...+..
T Consensus 91 d~~G~~~~~~G~~~ 104 (115)
T 3h9w_A 91 DDSGEVEALIGFMF 104 (115)
T ss_dssp CTTSCEEEEEEEEE
T ss_pred CCCCCEEEEEEEEe
Confidence 99999877665543
No 132
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=93.93 E-value=0.029 Score=48.70 Aligned_cols=82 Identities=16% Similarity=0.114 Sum_probs=50.5
Q ss_pred CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHH-HhCccc---CCCeeEEcC
Q 003069 741 HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIM-QQGFAY---LPGGMCVSS 816 (851)
Q Consensus 741 ~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~-~qG~~~---~y~GvRiss 816 (851)
.+++|+..+.+ +=.+.|+|+||.+||+|+-+|+.+.+...-..+..++....+..+.. ..|... .+.-....+
T Consensus 7 ~~~~i~~~d~~---~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (114)
T 1ll8_A 7 FNKAIFTVDAK---TTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIISR 83 (114)
T ss_dssp TTCEEEEEETT---TCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEECCT
T ss_pred CCceEEEEECC---CCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHHHHHHHHHhhccCCcceeccCcEEEEEec
Confidence 34577765532 25799999999999999999999998765554444333333222111 122211 111123578
Q ss_pred CCCeEEEcc
Q 003069 817 MGRAVSYEQ 825 (851)
Q Consensus 817 ~Grrf~i~~ 825 (851)
.|+.|+++-
T Consensus 84 dG~~~~v~~ 92 (114)
T 1ll8_A 84 SGEKIPVSV 92 (114)
T ss_dssp TCCCEEEEC
T ss_pred CCCEEEEEE
Confidence 999998864
No 133
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=93.86 E-value=0.42 Score=42.30 Aligned_cols=96 Identities=16% Similarity=0.042 Sum_probs=62.6
Q ss_pred HHhcCCCeEeecCCCCCCCCeeEcccHHHHHhhc------------cCHHHHhcccccccCChhcHHHHHHHHHHHHHhC
Q 003069 737 QLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLE------------TTLVALQDIMLDKILDEAGRKILCTEFAKIMQQG 804 (851)
Q Consensus 737 ~L~~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e------------~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG 804 (851)
.|-+.|++|+..+.+ =..+|.|+||.+||+ ++-+++++.+...-..... ....+++. .
T Consensus 10 il~~~~~gviv~D~~----g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~~~--~~~~~~~~----~ 79 (121)
T 4hi4_A 10 ALDNVSANVMIADND----LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNPA--HQRHLLAN----L 79 (121)
T ss_dssp HHTTSSSEEEEEETT----CBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSSHH--HHHHHHHH----C
T ss_pred HHhcCCccEEEEcCC----CeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCCHH--HHHHHHhC----c
Confidence 445579999998865 589999999999997 6777888877554432221 11222222 2
Q ss_pred cccCCCeeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 805 FAYLPGGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 805 ~~~~y~GvRiss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
- .+....+...|+.|. ..+--+.|++|...|.-++|.+
T Consensus 80 ~--~~~~~~~~~~~~~~~---~~~~pi~~~~g~~~g~v~~~~D 117 (121)
T 4hi4_A 80 T--GVHKAELNLGGRRFS---LDVVPVFNDANARLGSAVQWTD 117 (121)
T ss_dssp S--SCEEEEEEETTEEEE---EEEEEEECTTSCEEEEEEEEEE
T ss_pred C--CCcEEEEEECCEEEE---EEEEEEECCCCCEEEEEEEEEE
Confidence 1 122234444666654 3555677899999999888865
No 134
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=93.68 E-value=0.69 Score=36.53 Aligned_cols=92 Identities=8% Similarity=-0.063 Sum_probs=54.5
Q ss_pred CCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeEE-cCCCCe
Q 003069 742 SDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCV-SSMGRA 820 (851)
Q Consensus 742 ~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi-ss~Grr 820 (851)
|.+|+..+.+ =.++|.|+++.++|+++-+++.+.+...- +.. .+....+.++.+.|... . ++. ...++
T Consensus 2 ~~~i~~~d~~----g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~~-~~~~~~~~~~~~~~~~~--~-~~~~~~~~~- 70 (96)
T 3a0s_A 2 ETAIITLSKD----GRITEWNKKAEQLFGLKKENVLGRRLKDL--PDF-EEIGSVAESVFENKEPV--F-LNFYKFGER- 70 (96)
T ss_dssp CCEEEEEETT----SBEEEECHHHHHHHCCCHHHHTTSBGGGS--TTC-HHHHHHHHHHHHHTCCE--E-EEEEEETTE-
T ss_pred CceEEEEcCC----CCEeehhHHHHHHhCCCHHHhcCCCHHHC--cch-HHHHHHHHHHhccCCeE--E-EEEEcCCcE-
Confidence 4556655543 47899999999999999999999876544 222 22333445555544322 1 222 22333
Q ss_pred EEEcceEEeEeecCCCC-eeEEEEeec
Q 003069 821 VSYEQAVAWKVLDDDDS-NHCLAFMFM 846 (851)
Q Consensus 821 f~i~~a~vW~l~D~~g~-~~GqAa~F~ 846 (851)
++ ...+--+.|++|. ..|...+|.
T Consensus 71 -~~-~~~~~p~~~~~~~~~~g~v~~~~ 95 (96)
T 3a0s_A 71 -YF-NIRFSPFRNAKTQLLEGVIITID 95 (96)
T ss_dssp -EE-EEEEEEEECTTTCCEEEEEEEEE
T ss_pred -EE-EEEEEEeEcCCCCeeeEEEEEec
Confidence 33 2344556677654 567766664
No 135
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=93.40 E-value=2.1 Score=42.54 Aligned_cols=67 Identities=16% Similarity=0.293 Sum_probs=45.5
Q ss_pred HHHHhhhccC--CCCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHHHhh-
Q 003069 405 SRGFNDAING--FLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE- 481 (851)
Q Consensus 405 ~~~F~~~v~~--s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~FLrd- 481 (851)
.+.+|..+.. ....+|..... .++|+|..+... + . ++..-++...++++||+.||++|.|
T Consensus 13 f~~~~~~l~~~~~~~~~W~~~~~--~~~v~v~~~~~~----~-~----------~~~~~k~~~~i~~~~~~~v~~~l~d~ 75 (214)
T 1ln1_A 13 FWEACAELQQPALAGADWQLLVE--TSGISIYRLLDK----K-T----------GLYEYKVFGVLEDCSPTLLADIYMDS 75 (214)
T ss_dssp HHHTTHHHHSCCCTTTTCEEEEE--ETTEEEEEEEET----T-T----------TEEEEEEEEEETTSCHHHHHHHHHCH
T ss_pred HHHHHHHhccCCCCCCCcEEEEE--CCCeEEEEeccC----C-C----------CcEEEEEEEEECCCCHHHHHHHHcCH
Confidence 3444444433 24568987754 357999887643 1 1 2345566677844999999999997
Q ss_pred -hcccccc
Q 003069 482 -HRSEWAD 488 (851)
Q Consensus 482 -~R~eWd~ 488 (851)
.|.+||.
T Consensus 76 ~~r~~Wd~ 83 (214)
T 1ln1_A 76 DYRKQWDQ 83 (214)
T ss_dssp HHHHHHCT
T ss_pred HHHHHHHH
Confidence 7999996
No 136
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=93.28 E-value=0.99 Score=47.51 Aligned_cols=149 Identities=15% Similarity=0.218 Sum_probs=88.4
Q ss_pred CCCCchHHHHHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeeccccc
Q 003069 390 GGRQPAVLRTFSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQN 469 (851)
Q Consensus 390 ~Gr~~~sl~~LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~p 469 (851)
+-+. +=+.|+.-.+.+...-. ..++|..... .++|+|..+.. + +.++-++.+-+ +
T Consensus 43 w~~~--~~~~l~~~n~~al~~l~---~~~gW~~~~~--~~gv~Vy~~~~-----~------------~~l~~k~~~~v-~ 97 (258)
T 3fo5_A 43 WDPS--NQVYLSYNNVSSLKMLV---AKDNWVLSSE--ISQVRLYTLED-----D------------KFLSFHMEMVV-H 97 (258)
T ss_dssp CCGG--GHHHHHHHHHHHHHHHH---TCSCCEEEEE--ETTEEEEEEEC-----S------------SCEEEEEEEEE-S
T ss_pred cCcc--cceecccCCHHHHHhhh---ccCCCEEEec--CCCeEEEEEEC-----C------------CceEEEEEEEE-e
Confidence 5444 77778876665554332 5689987653 46899987532 1 13555777778 7
Q ss_pred CChHHHHHHHhh--hccccccccccchhhhhhccCCCCCCCCCCCCCCCcceEecccccCCCCceEEEEEecCCCCCccc
Q 003069 470 VPPALLVRFLRE--HRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPED 547 (851)
Q Consensus 470 vpp~~vf~FLrd--~R~eWd~~~~~~~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~ 547 (851)
+||+.||++|.| .|.+||.. + ++ .+++..|. ..++|- ++..... ..
T Consensus 98 ~~~~~v~~~L~D~~~R~~WD~~----~-----~~---------------~~vle~id----~~~ivY--~~~~p~~--~~ 145 (258)
T 3fo5_A 98 VDAAQAFLLLSDLRQRPEWDKH----Y-----RS---------------VELVQQVD----EDDAIY--HVTSPAL--GG 145 (258)
T ss_dssp SCHHHHHHHHHCGGGGGGTCTT----C-----CE---------------EEEEEEEE----TTEEEE--EEEECCC--TT
T ss_pred CCHHHHHHHHhCchhHhHhhhh----c-----cE---------------EEEEEEcC----CCeEEE--EEecCCc--cC
Confidence 999999999998 79999973 1 11 34444442 223444 3322111 12
Q ss_pred cccccceEEEeeccCcCCCCCCceeEEE-EeeccCC----CCCC--CCcccCceEEec
Q 003069 548 VALARDMYLLQLCSGIDENTVGACAQLV-FAPIDES----FADD--APLLASGFRVIP 598 (851)
Q Consensus 548 ~~~~~~~liLQe~~~~De~~~Gs~s~vV-yAPvD~~----ds~~--v~LLPSGF~I~P 598 (851)
.+-+||..+|... ..+ ...|. .+|| .-.|+-+ -+.+ +..+|+||.|-|
T Consensus 146 ~v~~RDFV~lr~~-r~~-~~~G~-~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P 200 (258)
T 3fo5_A 146 HTKPQDFVILASR-RKP-CDNGD-PYVIALRSVTLPTHRETPEYRRGETLCSGFCLWR 200 (258)
T ss_dssp CSSCEEEEEEEEE-ECC-SSTTC-CEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEE
T ss_pred CCCCCEEEEEEEE-Eec-cCCCC-EEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEE
Confidence 2456777777753 222 13453 2443 3344432 2333 368999999999
No 137
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=93.26 E-value=3.2 Score=40.48 Aligned_cols=54 Identities=24% Similarity=0.451 Sum_probs=40.1
Q ss_pred CCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHHHHHhh--hccccccc
Q 003069 418 DGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADY 489 (851)
Q Consensus 418 ~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf~FLrd--~R~eWd~~ 489 (851)
++|..... .++|+|..+... + . ++..-+++..+ +.||+.||++|.| .|.+||..
T Consensus 3 ~~W~~~~~--~~gv~v~~~~~~----~-~----------~~~~~k~~~~v-~~s~~~v~~~l~D~~~~~~W~~~ 58 (189)
T 3qsz_A 3 DGWSLAKD--AEGIKVYVRNVE----G-S----------PLREFRGEVRL-KAAADDVVKVLRDANAFRQWMPD 58 (189)
T ss_dssp CCCEEEEE--ETTEEEEEECCT----T-C----------SSCEEEEEEEE-SSCHHHHHHHHHCGGGGGGTSTT
T ss_pred CCCEEEEc--CCCEEEEEEeCC----C-C----------CeEEEEEEEEE-ECCHHHHHHHHHhHHHhhhHHHh
Confidence 58987643 468999988763 2 1 22345566777 7999999999997 89999963
No 138
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=92.20 E-value=0.26 Score=43.33 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=48.3
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCc
Q 003069 740 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGF 805 (851)
Q Consensus 740 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~ 805 (851)
..|++|+..+. +=.++|.|+++.++|+++.+++.+.+..--.++..+......+.++.+.|-
T Consensus 20 ~~~~~i~~~D~----~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (118)
T 3fg8_A 20 QGGLGFMALDE----DLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGR 81 (118)
T ss_dssp CTTCEEEEECT----TCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCC
T ss_pred hCCceEEEECC----CCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCC
Confidence 36888887664 468999999999999999999999987665555555556667778877764
No 139
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=91.55 E-value=1.3 Score=39.81 Aligned_cols=141 Identities=13% Similarity=0.101 Sum_probs=75.5
Q ss_pred eeeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeecceeCCCcEEEE
Q 003069 216 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVC 295 (851)
Q Consensus 216 R~~glV~~~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVv 295 (851)
+.+..|...+.++-+.|.|.+.|.+-+|.+.-+.+...+.+|. ...+.+-.+ +.+.-+..++... +++.-++.
T Consensus 5 ~~~~~i~ap~~~V~~~l~d~~~~~~w~p~~~~~~~~~~~~~g~----~~~~~~~~~--g~~~~~~~~~~~~-~~~~~i~~ 77 (147)
T 2d4r_A 5 RAERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGART----RSRWVAVAM--GKKVRWLEEEEWD-DENLRNRF 77 (147)
T ss_dssp EEEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEE----EEEEEEEET--TEEEEEEEEEEEE-TTTTEEEE
T ss_pred EEEEEeCCCHHHHHHHHhChhhhhhhcccccEEEEEEeCCCcc----EEEEEEEeC--CceEEEEEEEEEc-CCCcEEEE
Confidence 3455677889999999999999988888765444444332331 011111111 2223344455432 33332221
Q ss_pred EeecCCCCCCCCCCCCCCccceeecccceEEeecCCCceEEEEEEeeeccCCCccccchhhhhchHHHHHHHHHHHHH-H
Q 003069 296 ERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-H 374 (851)
Q Consensus 296 DvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~aLr-~ 374 (851)
. .+++ + ...+. .-.-+.+.++| |+|+|..+.+.....+..++.+++..-+-=+.+..+.+|+ .
T Consensus 78 ~-~~~g----~----~~~~~------~~~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~ 141 (147)
T 2d4r_A 78 F-SPEG----D----FDRYE------GTWVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEER 141 (147)
T ss_dssp E-EEEE----S----CSEEE------EEEEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred E-eccC----C----hhheE------EEEEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1221 1 00111 12345777787 9999998888764444455565554333335666667773 6
Q ss_pred HHhhh
Q 003069 375 IRQIA 379 (851)
Q Consensus 375 ~e~la 379 (851)
+|+.+
T Consensus 142 ~e~~~ 146 (147)
T 2d4r_A 142 VLAAS 146 (147)
T ss_dssp HHHTT
T ss_pred HHhhc
Confidence 66543
No 140
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=91.33 E-value=6.6 Score=39.58 Aligned_cols=128 Identities=13% Similarity=0.150 Sum_probs=71.3
Q ss_pred CCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEEEEeeecccccCChHHHH-HHHhh--hccccccccccc
Q 003069 417 DDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLV-RFLRE--HRSEWADYGVDA 493 (851)
Q Consensus 417 ~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl~A~tS~~L~pvpp~~vf-~FLrd--~R~eWd~~~~~~ 493 (851)
.++|.... ...++++|..+... + .|.+. ++...+ ++||+.|| ++|.| .|.+||..
T Consensus 41 ~~~W~~~~-~~~~g~~vy~~~~~----~----------~g~~~--k~~~~v-~~~~~~v~~~~~~d~~~r~~Wd~~---- 98 (229)
T 1em2_A 41 EENWKFEK-NNEYGDTVYTIEVP----F----------HGKTF--ILKTFL-PCPAELVYQEVILQPERMVLWNKT---- 98 (229)
T ss_dssp GGGCEEEE-ECTTCCEEEEEEET----T----------TEEEE--EEEEEE-SSCHHHHHHHTTTCHHHHTTTCTT----
T ss_pred CCCCEEEE-ecCCCCEEEEEecC----C----------CCceE--EEEEEe-cCCHHHHHHHHHhCccchhhcccc----
Confidence 46898764 22357888776543 1 12333 444556 89999999 88876 89999973
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCcceEecccccCCCCceEEEEEecCCCCCccccccccceEEEeeccCcCCCCCCceeE
Q 003069 494 YSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDVALARDMYLLQLCSGIDENTVGACAQ 573 (851)
Q Consensus 494 ~s~~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~~~~De~~~Gs~s~ 573 (851)
+. + .+++-.|. .+..| +..+..... ...+-+||..++.-. ..++ +. -+
T Consensus 99 ~~-----~---------------~~vle~~~----~~t~I-~~~~~~p~~--~~~~~~RDfv~~r~~-~~~~---~~-~v 146 (229)
T 1em2_A 99 VT-----A---------------CQILQRVE----DNTLI-SYDVSAGAA--GGVVSPRDFVNVRRI-ERRR---DR-YL 146 (229)
T ss_dssp EE-----E---------------EEEEEEET----TTEEE-EEEEECCBT--TTTBCCEEEEEEEEE-EECS---SE-EE
T ss_pred cc-----e---------------EEEEEecC----CCeEE-EEEEecCcC--CCCcCCCeeEEEEEE-EEcC---CE-EE
Confidence 11 1 34444442 12222 111211100 112456788887764 2332 22 35
Q ss_pred EEEeeccCCC----CCC--CCcccCceEEec
Q 003069 574 LVFAPIDESF----ADD--APLLASGFRVIP 598 (851)
Q Consensus 574 vVyAPvD~~d----s~~--v~LLPSGF~I~P 598 (851)
++...|+-+. +.+ +.++++||.|-|
T Consensus 147 i~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p 177 (229)
T 1em2_A 147 SSGIATSHSAKPPTHKYVRGENGPGGMIVLK 177 (229)
T ss_dssp EEEEECCCTTSCCCTTSEECEECSEEEEEEE
T ss_pred EEEecccCCCCCCCCCCEeeeecccEEEEEe
Confidence 6666776542 222 457889999988
No 141
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=89.49 E-value=1.8 Score=43.85 Aligned_cols=114 Identities=16% Similarity=0.133 Sum_probs=64.7
Q ss_pred HhhCCCCCCCCCCChHHHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhh------------ccCHHHHhcccccc
Q 003069 717 IHTGGELLRADSLTGDALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDML------------ETTLVALQDIMLDK 783 (851)
Q Consensus 717 ~~~G~~L~~~~~~~~~~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~------------e~~w~el~~lpsr~ 783 (851)
++....|++-. .....++.++. .+.+|+..+.+ =..+|+|+++.+|| +|+-+++++-+...
T Consensus 8 ~~~~~~~~~~~--~e~~~l~~iLd~~~~~vii~D~~----g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~ 81 (233)
T 3vol_A 8 HHHSSGLVPRG--SHMARIKSALDNVSANVMIADND----LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDV 81 (233)
T ss_dssp ----------C--THHHHHHHHHTTSSSEEEEEETT----SBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGG
T ss_pred ccccccCCchH--HHHHHHHHHHhcCCCcEEEECCC----CcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHH
Confidence 34445666632 23334444444 68999887755 68999999999999 57777777777654
Q ss_pred cCChhcHHHHHHHHHHHHHhCcccCCCeeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 784 ILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 784 sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
-...+. ....+++.. + + .+ ...+...|+.| ..++=-+.|++|.+.|.-..|.+
T Consensus 82 ~~~~~~--~~~~~~~~~-~-~---~~-~~~~~~~g~~~---~~~~~Pi~d~~G~~~g~v~~~~D 134 (233)
T 3vol_A 82 FHKNPA--HQRHLLANL-T-G---VH-KAELNLGGRRF---SLDVVPVFNDANERLGSAVQWTD 134 (233)
T ss_dssp GSSSHH--HHHHHHHTC-C-S---CE-EEEEEETTEEE---EEEEEEEECTTCCEEEEEEEEEE
T ss_pred HcCCHH--HHHHHHHhc-c-c---ce-eEEEEECCEEE---EEEEEEEECCCCCEEEEEEEEeh
Confidence 443221 111222221 1 1 12 23344456544 56677788999999998888865
No 142
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=89.32 E-value=0.71 Score=41.13 Aligned_cols=47 Identities=30% Similarity=0.350 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003069 73 RCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHS 126 (851)
Q Consensus 73 Rak~Kkrq~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~ 126 (851)
|+|.|+++.+...+.... .|..+|..|..++++|..|+..|++-+..
T Consensus 29 rSR~krk~r~~e~~~r~~-------~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 29 KSRDKAKMRNLETQHKVL-------ELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666555555554444 44555555555555666666666665544
No 143
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=89.19 E-value=1.5 Score=47.67 Aligned_cols=91 Identities=7% Similarity=-0.053 Sum_probs=67.8
Q ss_pred CCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeEEcCCCCeEEEcceEEeEeec
Q 003069 754 ASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRAVSYEQAVAWKVLD 833 (851)
Q Consensus 754 ~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i~~a~vW~l~D 833 (851)
.|=.|+|.|.++.++++|+-+||++.+..--.-|.++..-...+.++.+.|-.....==.+.+.|.-+|++- ..--+.|
T Consensus 259 ~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vWv~~-~~~~v~~ 337 (361)
T 4f3l_A 259 LEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQT-HYYITYH 337 (361)
T ss_dssp TTSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEEEEE-EEEEEEC
T ss_pred CCceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEEEEE-EEEEEEc
Confidence 357899999999999999999999988876667888877777788888888653322224578898888853 3334456
Q ss_pred C-CCCeeEEEEee
Q 003069 834 D-DDSNHCLAFMF 845 (851)
Q Consensus 834 ~-~g~~~GqAa~F 845 (851)
+ +|...+.-.+.
T Consensus 338 ~~~g~~~~iv~~~ 350 (361)
T 4f3l_A 338 QWNSRPEFIVCTH 350 (361)
T ss_dssp TTTCCEEEEEEEE
T ss_pred CCCCCeeEEEEEE
Confidence 5 68877665544
No 144
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=88.19 E-value=0.72 Score=38.75 Aligned_cols=97 Identities=8% Similarity=0.050 Sum_probs=59.5
Q ss_pred HHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhcc---CHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCC
Q 003069 734 LLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLET---TLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLP 809 (851)
Q Consensus 734 ~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~---~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y 809 (851)
.++.++. .|.+|+..+.+ =.++|.|++|.++|++ +-+++.+.+...-..+.. +.++.+.|-...
T Consensus 16 ~~~~il~~~~~~i~~~d~~----g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~- 83 (118)
T 2w0n_A 16 QRQAMLQSIKEGVVAVDDR----GEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDGTPRR- 83 (118)
T ss_dssp HHHHHHHCCCCCCEEEBTT----TBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTTCCCC-
T ss_pred HHHHHHhhccccEEEECCC----CcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccCceec-
Confidence 3455554 78888777654 5789999999999997 788888877655443322 444555554321
Q ss_pred CeeEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 810 GGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 810 ~GvRiss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
...+...|+.|.+. +-.+.| +|...|...+|.+
T Consensus 84 -~~~~~~~~~~~~~~---~~p~~~-~g~~~g~v~~~~D 116 (118)
T 2w0n_A 84 -DEEITIKDRLLLIN---TVPVRS-NGVIIGAISTFRD 116 (118)
T ss_dssp -CCCEESSSCEECCC---EECCCC-SSCCCCEEECCCC
T ss_pred -cEEEEECCEEEEEe---eceeee-CCEEEEEEEEEEe
Confidence 22234456544332 223345 7777777666654
No 145
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=87.60 E-value=1.1 Score=39.08 Aligned_cols=47 Identities=32% Similarity=0.385 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 72 RRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 72 RRak~Kkrq~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
||++.|+++....++. ....|..+|..|..++++|..|+..|++-+-
T Consensus 28 krSR~krk~r~~e~~~-------r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 28 RKSRDKAKMRNLETQH-------KVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666555544444 3445555555666666667777777776543
No 146
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=86.82 E-value=1.4 Score=36.72 Aligned_cols=45 Identities=29% Similarity=0.432 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003069 73 RCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (851)
Q Consensus 73 Rak~Kkrq~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el 124 (851)
|++.|++.....+.. +.+.+..+|..|..+++.|+.|++.|++-+
T Consensus 16 R~R~KKk~~~~~le~-------~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 16 RYRQKKRAEQEALTG-------ECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555555 445555555555666666667777776644
No 147
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=86.63 E-value=1.1 Score=52.54 Aligned_cols=106 Identities=11% Similarity=0.035 Sum_probs=74.7
Q ss_pred HHhcCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeEEcC
Q 003069 737 QLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSS 816 (851)
Q Consensus 737 ~L~~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss 816 (851)
.+-.++..|+..+. +-.++|.|+++.+|++|+-+|..+.+......+..++....+++.+ .+|-.....=.-..+
T Consensus 523 lle~a~~~i~~~D~----~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~~~~i~~~l-~~g~~~~~E~~~~~~ 597 (635)
T 4eho_A 523 QVHASMQPVLITDA----EGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDFLRNVAELI-DHGRGWRGEVLLRGA 597 (635)
T ss_dssp HHHHCSSCCEEEET----TCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHHHHHHHHHH-HHCCCBCCCCEECCS
T ss_pred HHHhCCCcEEEECC----CCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHHHHHHHHHH-HcCCcEEEEEEEEcc
Confidence 34457777777654 4789999999999999999999999877666555555445555544 444332222223458
Q ss_pred CCCeEEEcceEEeEeecCCCCeeEEEEeecCc
Q 003069 817 MGRAVSYEQAVAWKVLDDDDSNHCLAFMFMNW 848 (851)
Q Consensus 817 ~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~W 848 (851)
.|+.|++.--. =-+.|++|++.|..++|.+=
T Consensus 598 dG~~~~~~~~~-~pv~d~~G~v~g~v~i~~DI 628 (635)
T 4eho_A 598 GNRPLPLAVRA-DPVTRTEDQSLGFVLIFSDA 628 (635)
T ss_dssp SSSCEECCCCE-EEECSTTSSCCEEEECCCCC
T ss_pred CCcEEEEEEEE-EEEECCCCCEEEEEEEEEeC
Confidence 88888876432 35789999999999988663
No 148
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=86.38 E-value=1.7 Score=38.96 Aligned_cols=78 Identities=12% Similarity=0.055 Sum_probs=51.0
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeE-EcCCC
Q 003069 740 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC-VSSMG 818 (851)
Q Consensus 740 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR-iss~G 818 (851)
+.+++|+..+. |=.|.|.|.++.++|+|+-+|+++.+..--..|.+++.-.+.+. +++-.. ..-.| +.+.|
T Consensus 7 ~~~d~i~v~d~----~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~---~~~~~~-~~e~r~~~kdG 78 (111)
T 2vlg_A 7 TKTDIHAVLAS----NGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY---NEHHLM-PCTFRFIKKDH 78 (111)
T ss_dssp --CCEEEEECT----TSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH---CSCCSS-CEEEEEECTTS
T ss_pred cCCCEEEEEcC----CCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh---ccCCCc-cEEEEEEcCCC
Confidence 45777777664 35899999999999999999999987644445666655444432 222111 11233 36889
Q ss_pred CeEEEcc
Q 003069 819 RAVSYEQ 825 (851)
Q Consensus 819 rrf~i~~ 825 (851)
+.++++-
T Consensus 79 ~~~wve~ 85 (111)
T 2vlg_A 79 TIVWVEA 85 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9888864
No 149
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.21 E-value=0.52 Score=40.29 Aligned_cols=43 Identities=21% Similarity=0.453 Sum_probs=38.6
Q ss_pred CHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhh
Q 003069 25 TPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQN 71 (851)
Q Consensus 25 T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQN 71 (851)
++.-.+.|+.+|...+.+....-..|+.+. +|+..|||-||-.
T Consensus 14 ~p~~~e~L~~Yy~~hk~L~EeDl~~L~~ks----kms~qqvkdwFa~ 56 (70)
T 2ys9_A 14 PPPDIQPLERYWAAHQQLRETDIPQLSQAS----RLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCHHHHHHHHHTCCCCTTHHHHHHHHT----TCCHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHhcccchhhHHHHHHHh----CCCHHHHHHHHHh
Confidence 344458999999999999999999999999 9999999999954
No 150
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=83.84 E-value=2.4 Score=35.25 Aligned_cols=45 Identities=27% Similarity=0.489 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003069 73 RCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (851)
Q Consensus 73 Rak~Kkrq~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el 124 (851)
|++.|++.....++.+...| ..+|..|..+++.|+.|...|++.+
T Consensus 16 rcR~rKk~~~~~Le~~v~~L-------~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 16 KCRNRRRELTDTLQAETDQL-------EDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555544444 4444455555555666666665544
No 151
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=83.09 E-value=3.1 Score=34.27 Aligned_cols=34 Identities=29% Similarity=0.273 Sum_probs=24.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003069 91 KLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (851)
Q Consensus 91 kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el 124 (851)
.|..+.+.+..+|..|..+++.|+.|+..|++.+
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556666777777777788888888888765
No 152
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=82.98 E-value=1.4 Score=41.93 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=55.0
Q ss_pred HHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeE
Q 003069 735 LKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC 813 (851)
Q Consensus 735 ~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 813 (851)
++.++. .|.+|+..+.+ =.+.|+|++|.++|+++-+++.+.|..--..+.. +.++.+.|-. ...+..
T Consensus 82 l~~il~~~~~gvi~~D~~----g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~ 149 (190)
T 2jhe_A 82 LSALLEALPEPVLSVDMK----SKVDMANPASCQLFGQKLDRLRNHTAAQLINGFN-------FLRWLESEPQ-DSHNEH 149 (190)
T ss_dssp HHHHHHHCSSCEEEECTT----CBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCC-------HHHHHHTCCC-SCEEEE
T ss_pred HHHHHHhCCCcEEEEcCC----CCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCC-------HHHHHhcCCC-CCcceE
Confidence 445544 78888888765 6899999999999999999999988765554332 2234444421 112233
Q ss_pred EcCCCCeEEEcceEEeEeecCCCC
Q 003069 814 VSSMGRAVSYEQAVAWKVLDDDDS 837 (851)
Q Consensus 814 iss~Grrf~i~~a~vW~l~D~~g~ 837 (851)
+...|+.|.+. +-.+.+++|.
T Consensus 150 ~~~~g~~~~~~---~~pi~~~~~~ 170 (190)
T 2jhe_A 150 VVINGQNFLME---ITPVYLQDEN 170 (190)
T ss_dssp EEETTEEEEEE---EEEETTTTEE
T ss_pred EEECCeEEEEE---EEEEEecCCC
Confidence 34467766543 3334454554
No 153
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=79.67 E-value=7.3 Score=31.97 Aligned_cols=43 Identities=28% Similarity=0.353 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003069 73 RCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVY 115 (851)
Q Consensus 73 Rak~Kkrq~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~ 115 (851)
|++.|++.....++.....+..+|..|..+...|..++.+|+.
T Consensus 15 k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 15 RSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777778888888888999999999999999888888774
No 154
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=78.92 E-value=9.3 Score=34.17 Aligned_cols=107 Identities=7% Similarity=-0.027 Sum_probs=67.1
Q ss_pred HHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhccc--ccccCChhcHHHHHHHHHHHHHhCcccCCCe
Q 003069 735 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIM--LDKILDEAGRKILCTEFAKIMQQGFAYLPGG 811 (851)
Q Consensus 735 ~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lp--sr~sae~~~r~er~~lL~~v~~qG~~~~y~G 811 (851)
++.+. .++..+.-.+.. -..+|.|.+..++|+++-+++.+.. +....-|.+|+.-...+.++.+.|-.....
T Consensus 11 l~~~~~~~~~g~w~~d~~----~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~e- 85 (142)
T 3mr0_A 11 FQLAVSGASAGLWDWNPK----TGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDVE- 85 (142)
T ss_dssp HHHHHHHTTCEEEEECTT----TCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCEEEE-
T ss_pred HHHHHHhCCcEEEEEEcC----CCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCceEEE-
Confidence 44343 366666554444 3467999999999999998876532 223345777777777777777766332211
Q ss_pred eE-EcCCCCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 812 MC-VSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 812 vR-iss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
.| +.+.|...|++. ..--+.|++|...+...++.+
T Consensus 86 ~r~~~~~G~~~w~~~-~~~~~~d~~g~~~~~~G~~~D 121 (142)
T 3mr0_A 86 YRVRTRSGDFRWIQS-RGQALWNSAGEPYRMVGWIMD 121 (142)
T ss_dssp EEEECTTSCEEEEEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred EEEECCCCCEEEEEE-EEEEEECCCCCEEEEEEEEEc
Confidence 23 367788777743 333467999998776655543
No 155
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=76.31 E-value=3.6 Score=33.98 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003069 73 RCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (851)
Q Consensus 73 Rak~Kkrq~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el 124 (851)
|++.|++..... |..+-..+..+|..|..++..|+.|+..|++.+
T Consensus 15 k~R~rKk~~~~~-------Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 15 KSRKRKLERIAR-------LEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555444433 344445555666666666667777777776654
No 156
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=75.82 E-value=8.5 Score=34.46 Aligned_cols=63 Identities=21% Similarity=0.162 Sum_probs=34.0
Q ss_pred CCChhhhhhhhhhhhHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 59 NIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 59 gL~~rQVkvWFQNRRak~Kkrq~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
|++..+|.-+=|-||+ -|.+--+..|+.. -..+...|..++..+..++++|+.||.+++.|++
T Consensus 17 gls~eev~~lKq~RRt-lKNRgyAq~CR~K---r~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d 79 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRT-LKNRGYAQSCRYK---RVQQKHHLENEKTQLIQQVEQLKQEVSRLARERD 79 (90)
T ss_dssp TCCHHHHHHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh-hhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999888776664 3332222222221 1123344555555555555556666655555544
No 157
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=75.42 E-value=5.4 Score=41.48 Aligned_cols=95 Identities=8% Similarity=-0.059 Sum_probs=57.6
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeEEcC-CC
Q 003069 740 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSS-MG 818 (851)
Q Consensus 740 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss-~G 818 (851)
..|++|+..+.+ =.++|+|++|.++|+|+.+++.+.+...-.++ ++....+.++.+.|-.. -++.-. .+
T Consensus 16 ~~~~~i~~~d~~----g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~ 85 (349)
T 3a0r_A 16 SLETAIITLSKD----GRITEWNKKAEQLFGLKKENVLGRRLKDLPDF---EEIGSVAESVFENKEPV---FLNFYKFGE 85 (349)
T ss_dssp GSSSEEEEEESS----SBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTT---THHHHHHHHHHHHCCCC---EEECCCBTT
T ss_pred hhcCeEEEECCC----CCEEeeHHHHHHHhCCCHHHHcCcCHHHCcCh---hHHHHHHHHHHhcCCce---eecccccCc
Confidence 378888887654 58999999999999999999999876654322 22334455555544211 111111 23
Q ss_pred CeEEEcceEEeEeecCCCCe-eEEEEeecC
Q 003069 819 RAVSYEQAVAWKVLDDDDSN-HCLAFMFMN 847 (851)
Q Consensus 819 rrf~i~~a~vW~l~D~~g~~-~GqAa~F~~ 847 (851)
+.|.+ .+-.+.|++|.. .|...++.+
T Consensus 86 ~~~~~---~~~~~~~~~~~~~~g~~~~~~D 112 (349)
T 3a0r_A 86 RYFNI---RFSPFRNAKTQLLEGVIITIDD 112 (349)
T ss_dssp BCCEE---EEEEECCTTTTSSCEEEEEEEC
T ss_pred eEEEE---EEEEEEcCCCceeeEEEEEEEe
Confidence 33333 344456666654 577666654
No 158
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=73.99 E-value=5.3 Score=34.14 Aligned_cols=52 Identities=27% Similarity=0.323 Sum_probs=29.2
Q ss_pred hhhhhH----HHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 003069 69 FQNRRC----REKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYM 120 (851)
Q Consensus 69 FQNRRa----k~Kkrq~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~L 120 (851)
.|||-+ +.+|.+.-..++..-..+...+..+..++..|..++..|..||..|
T Consensus 14 ~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 14 AQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456533 3444444445555555566666666666666666666666665544
No 159
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=73.65 E-value=14 Score=40.19 Aligned_cols=81 Identities=12% Similarity=0.169 Sum_probs=61.3
Q ss_pred CCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCC---C-eeE-EcCCCCeEEEcceEE
Q 003069 754 ASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLP---G-GMC-VSSMGRAVSYEQAVA 828 (851)
Q Consensus 754 ~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y---~-GvR-iss~Grrf~i~~a~v 828 (851)
.|=.|+|.|.++.++++|+-+||++.+..--.-|.++..-.+.+.++.+.|-..+. + =.| +.+.|.-.|++ +-
T Consensus 162 ~dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kdG~~vWle--t~ 239 (339)
T 3rty_A 162 ATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLE--TE 239 (339)
T ss_dssp TTCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTTSCEEEEE--EE
T ss_pred CCCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccCCCEEEEE--EE
Confidence 35789999999999999999999999877667788888878888888888765321 1 133 57889888885 34
Q ss_pred eE-eecCCC
Q 003069 829 WK-VLDDDD 836 (851)
Q Consensus 829 W~-l~D~~g 836 (851)
|+ +.|..+
T Consensus 240 ~~~~~np~s 248 (339)
T 3rty_A 240 WTSFVNPWS 248 (339)
T ss_dssp EEEEECTTT
T ss_pred EEEEECCCC
Confidence 55 456553
No 160
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=73.05 E-value=8 Score=35.01 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=27.2
Q ss_pred HHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 85 LQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 85 l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
++.+|..++...+......+.|+.++.+|+.||.+|++|.+
T Consensus 49 le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 49 MEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455667778888888888888888754
No 161
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=72.60 E-value=7 Score=34.34 Aligned_cols=42 Identities=29% Similarity=0.253 Sum_probs=30.3
Q ss_pred HHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 84 RLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 84 ~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
.++.+.+.|+.+|..+.+++..+......|+.||++||+|..
T Consensus 24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 455566667777777777777766666678888888888764
No 162
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=70.80 E-value=16 Score=35.13 Aligned_cols=122 Identities=11% Similarity=0.077 Sum_probs=70.6
Q ss_pred eeeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeecceeCCCcEEEE
Q 003069 216 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVC 295 (851)
Q Consensus 216 R~~glV~~~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVv 295 (851)
..+-+|.-.+..+-+.+-|.+.|-+.+|-+.-+.++..+.++ +.+++.+.- -..++-|.-|+...-+ +.-+..
T Consensus 8 ~~si~I~ap~~~V~~~v~D~~~~p~~~P~~~~~~v~~~~~~~----~~~~~~~~~--~G~~~~~~s~~~~~~~-~~~i~~ 80 (172)
T 3tfz_A 8 EHTVTVAAPADLVWEVLADVLGYADIFPPTEKVEILEEGQGY----QVVRLHVDV--AGEINTWTSRRDLDPA-RRVIAY 80 (172)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGHHHHCSSEEEEEEEEEETTE----EEEEEEEEE--TTEEEEEEEEEEEETT-TTEEEE
T ss_pred EEEEEeCCCHHHHHHHHHhHHHHHhhCcccceEEEEecCCCE----EEEEEEEec--CCEEEEEEEEEEEeCC-CCEEEE
Confidence 456678889999999999999999999987655555443222 122333211 1223333333333222 221111
Q ss_pred EeecCCCCCCCCCCCCCCccceeecccceE-EeecCCCceEEEEEEeeeccCCCccccchhhhh
Q 003069 296 ERSLTSSTGGPTGPPPSSFVRAEMLASGFL-IRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYE 358 (851)
Q Consensus 296 DvSld~~~~~~~~~~~~~~~r~rrlPSGcl-Iq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~ 358 (851)
.+++. +++ |. .+ .|.. +.+.++|+|+|+|.-+.++....+..++.++..
T Consensus 81 -~~~~~--~gp-------f~---~~-~g~w~f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~ 130 (172)
T 3tfz_A 81 -RQLET--API-------VG---HM-SGEWRAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLT 130 (172)
T ss_dssp -EEEEC--CTT-------EE---EE-EEEEEEEEEETTEEEEEEEEEEEECCCCTTSSBTTTBC
T ss_pred -EEeeC--CCC-------hh---hc-EEEEEEEECCCCcEEEEEEEEEEEcChhHHHhhccccC
Confidence 12211 011 10 01 2333 567777899999999999988888888877653
No 163
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=70.21 E-value=3.3 Score=36.23 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=50.3
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHHHHHHhhhhHHHHhhHHHHH
Q 003069 22 VRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLME 101 (851)
Q Consensus 22 ~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~~~~l~~~n~kl~~en~~l~e 101 (851)
.+||+++....-..+.... .....++|+++ |+++..|..|...-+.. ...... ... .
T Consensus 4 ~~ys~e~k~~~v~~~~~~~---g~s~~~ia~~~----gIs~~tl~rW~~~~~~~-----g~~~~~--~~~------~--- 60 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSD---GASLQQIANDL----GINRVTLKNWIIKYGSN-----HNVQGT--TPS------A--- 60 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGG---GSCHHHHHHHH----TSCHHHHHHHHHHHCCC-----STTCSC--CCC------H---
T ss_pred CCCCHHHHHHHHHHHHHcC---CChHHHHHHHH----CcCHHHHHHHHHHHhhc-----CcccCC--CCC------C---
Confidence 4789988876666664320 12367889999 99999999997432210 000000 000 0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhccCCCc
Q 003069 102 ENDRLQKQVSHLVYENGYMRQQLHSAPAT 130 (851)
Q Consensus 102 e~~~l~~e~~~L~~EN~~Lk~el~~~~~~ 130 (851)
......++.+|+.||++|+.|++-+...
T Consensus 61 -~~~~~~ei~~L~~e~~~L~~e~~~Lkk~ 88 (97)
T 2jn6_A 61 -AVSEAEQIRQLKKENALQRARTRHPAES 88 (97)
T ss_dssp -HHHTHHHHHHHHHCGGGGGGTTSCCCGG
T ss_pred -CCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112345677888888888888766544
No 164
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=69.84 E-value=5.8 Score=33.06 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=5.7
Q ss_pred HHHHHHhHHHHHhh
Q 003069 111 SHLVYENGYMRQQL 124 (851)
Q Consensus 111 ~~L~~EN~~Lk~el 124 (851)
..|..|.+.|++++
T Consensus 47 ~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 47 YHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 165
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=69.22 E-value=15 Score=34.74 Aligned_cols=105 Identities=11% Similarity=0.035 Sum_probs=65.4
Q ss_pred HHHHHHh-cCCCeEeecCCCCCCCCeeEcccHH---HHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccC
Q 003069 733 ALLKQLW-HHSDAIMCCSLKTNASPVFTFANQA---GLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYL 808 (851)
Q Consensus 733 ~~~~~L~-~~~~avl~h~~~~~~dP~F~YaN~a---AL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~ 808 (851)
+.+++++ +-|+.|+..+.. =.++|.|++ |-++|+.+ ++.++-+-.--.+ ....+...-+-++.+.|-..-
T Consensus 19 ~~l~~IL~~~~~gI~~vD~~----g~I~~~N~a~~~~~~i~g~~-~~~iGr~v~~~~~-~~~~~~v~~i~~~l~~g~~~~ 92 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNKD----DIFQYYNDSVPAAEMVFKRT-PSQVGRNVELCHP-PKVLDKVKKVFELLRNGQRDK 92 (151)
T ss_dssp HHHHHHHHHSSSEEEEEETT----SBEEEECCCSCGGGCSSCCC-GGGTTSBGGGSSC-HHHHHHHHHHHHHHHTTSBSE
T ss_pred HHHHHHHHhCCCceEEEcCC----CeEEEEeCCCchhhhhcCCC-HHHcCCCHHHhCC-HHHHHHHHHHHHHHHcCCccE
Confidence 3455555 488888877655 689999999 99999944 7888876543333 333333333444555565332
Q ss_pred CCeeEEcCC--CCeEEEcceEEeEeecCCCCeeEEEEeecC
Q 003069 809 PGGMCVSSM--GRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 847 (851)
Q Consensus 809 y~GvRiss~--Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~ 847 (851)
.=+.+... |+.+.+ ...-|.|++|.+.|.-.+|.+
T Consensus 93 -~~~~~~~~~~~~~v~v---~~~Pi~d~~G~~~G~vev~~D 129 (151)
T 2qkp_A 93 -VNMWFQSERLGKFVYV---TYAAVRDQAGDFQGVLEYVQD 129 (151)
T ss_dssp -EEEEEEETTTTEEEEE---EEEEEECTTCCEEEEEEEEEE
T ss_pred -EEEEEecCCCCeEEEE---EEEEEECCCCCEEEEEEEEEE
Confidence 22333323 555544 334556999999998888865
No 166
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=68.31 E-value=18 Score=39.60 Aligned_cols=89 Identities=10% Similarity=0.074 Sum_probs=61.7
Q ss_pred CCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCeeE-EcCCCCeEEEcceEEeEe-e
Q 003069 755 SPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC-VSSMGRAVSYEQAVAWKV-L 832 (851)
Q Consensus 755 dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR-iss~Grrf~i~~a~vW~l-~ 832 (851)
|=.|+|.|.++.++++|+-+||++.++---.-|.++..-...+.++.+.|--....=.| ..+.|.-.|++- -|++ .
T Consensus 287 dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~vWv~~--~~~~~~ 364 (387)
T 4f3l_B 287 DGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRS--RWFSFM 364 (387)
T ss_dssp TSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEEEEEE--EEEEEE
T ss_pred CCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEEEEEE--EEEEEE
Confidence 57899999999999999999999987766567777777777777776544211111123 478899999863 3444 4
Q ss_pred cC-CCCeeEEEEee
Q 003069 833 DD-DDSNHCLAFMF 845 (851)
Q Consensus 833 D~-~g~~~GqAa~F 845 (851)
|. +|...+.-++.
T Consensus 365 ~~~~g~~~~ivg~~ 378 (387)
T 4f3l_B 365 NPWTKEVEYIVSTN 378 (387)
T ss_dssp ETTTTEEEEEEEEE
T ss_pred CCCCCCEEEEEEEE
Confidence 55 57766655443
No 167
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=67.31 E-value=18 Score=29.94 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 95 MNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 95 en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
....+..+.+.++.+...|+.+...|+.|+.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555543
No 168
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=66.34 E-value=14 Score=30.50 Aligned_cols=32 Identities=34% Similarity=0.437 Sum_probs=28.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003069 91 KLSAMNKLLMEENDRLQKQVSHLVYENGYMRQ 122 (851)
Q Consensus 91 kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~ 122 (851)
.|..-|..+.+|.+.++++++.|..||..||.
T Consensus 31 QLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 31 QLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 46677888999999999999999999999985
No 169
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=65.97 E-value=24 Score=29.15 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 97 KLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 97 ~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
..|..+...++.+-..|+.+...|++|+.
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 170
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=65.39 E-value=12 Score=30.92 Aligned_cols=35 Identities=23% Similarity=0.186 Sum_probs=22.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 003069 94 AMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAP 128 (851)
Q Consensus 94 ~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~~~ 128 (851)
.....+..+...++.+-..|..+...|++|+..+.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666677777777777766543
No 171
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=65.25 E-value=21 Score=38.72 Aligned_cols=105 Identities=9% Similarity=0.023 Sum_probs=70.4
Q ss_pred HHHHHHh-cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcccCCCe
Q 003069 733 ALLKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGG 811 (851)
Q Consensus 733 ~~~~~L~-~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 811 (851)
+.++.++ +.|+.|+..+.. =.++|.|++ .++| ++-+++++-+-.--..+.... ....+.++.+.|-.. ..-
T Consensus 239 ~~l~~IL~~l~dgIivvD~~----g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~~~~-~~~~l~~~l~~g~~~-~~~ 310 (369)
T 3cax_A 239 EELKAIFEALPVDVTFIDKD----DRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPKSVY-VVNKILKAFKEGRKK-EAT 310 (369)
T ss_dssp HHHHHHHHHSSSEEEEECTT----SBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGGGHH-HHHHHHHHHHHTSCS-CEE
T ss_pred HHHHHHHHhCCCcEEEECCC----CcEEEEcCH-HHcc-CChHHHcCCcHHHHCChhhHH-HHHHHHHHHHcCCce-EEE
Confidence 3455554 488999888765 589999999 9999 999999998776554433222 233344555666432 223
Q ss_pred eEEcCCCCeEEEcceEEeEeecCCCCeeEEEEeecCc
Q 003069 812 MCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMNW 848 (851)
Q Consensus 812 vRiss~Grrf~i~~a~vW~l~D~~g~~~GqAa~F~~W 848 (851)
+.+...|+.+.+. +--|.|++|.+.|...+|.+-
T Consensus 311 ~~~~~~g~~v~v~---~~PI~d~~G~~~G~v~v~~DI 344 (369)
T 3cax_A 311 FWLRLREKYVYIK---YVPLFNEKGEYIGTLEMTMDI 344 (369)
T ss_dssp EEEEETTEEEEEE---EEEEECTTSCEEEEEEEEEEC
T ss_pred EEEeeCCEEEEEE---EEEEECCCCCEEEEEEEEEcC
Confidence 4455567655553 335679999999988888653
No 172
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=62.56 E-value=5.5 Score=41.78 Aligned_cols=39 Identities=23% Similarity=0.211 Sum_probs=25.2
Q ss_pred HHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003069 85 LQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSA 127 (851)
Q Consensus 85 l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~~ 127 (851)
++.+|+.|++++..+++++.+ .++|+.||++||+.|+-.
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~----~~~l~~En~rLr~lL~~~ 62 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESE----VADLKKENKDLKESLDIT 62 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCc
Confidence 445566666666666555433 455889999999988743
No 173
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=61.86 E-value=24 Score=32.51 Aligned_cols=137 Identities=9% Similarity=0.088 Sum_probs=74.5
Q ss_pred eeeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCCC--ccHHHHHHHhhcccccccccceeeEEeecceeCCCcEE
Q 003069 216 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGN--GGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLV 293 (851)
Q Consensus 216 R~~glV~~~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~--~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~wa 293 (851)
+.+..|...+..+-+.+.|.+.|-+.+|..+-+.++..+. +|.- +.+++.+ -.-+.++-|..|++..-.+ ..
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~~~~v~~~~~~~g~~~--~~~~~~~--~~~~~~~~~~~~v~~~~~~--~~ 78 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVST--VDAEAQV--GFSFLREKFATRVRRDKDA--RS 78 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEE--EEEEEEC--STTSSCCEEEEEEEEETTT--CE
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCCCcCeeEEEEecCCCCCce--EEEEEEE--EecceeEEEEEEEEEcCCC--cE
Confidence 4566788899999999999999999888664333333211 1110 2233333 2234566677787753333 22
Q ss_pred EEEeecCCCCCCCCCCCCCCccceeecccceEEeecCCCceEEEEEEeeeccCCCccccchhhhhchHHHHHHHHHHHH-
Q 003069 294 VCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAM- 372 (851)
Q Consensus 294 VvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~Sg~afgar~w~~aL- 372 (851)
|.-.++++ + ...+...+ -+++.++| |+|++.-+.|+.. .++..+...-+.-.+++.+.++
T Consensus 79 i~~~~~~G----~----f~~~~g~w------~f~~~~~g-t~v~~~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~f~ 139 (148)
T 1t17_A 79 IDVSLLYG----P----FKRLNNGW------RFMPEGDA-TRVEFVIEFAFKS----ALLDAMLAANVDRAAGKLIACFE 139 (148)
T ss_dssp EEEEESST----T----SSCEEEEE------EEEEETTE-EEEEEEEEECCSC----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCC----C----hhccEEEE------EEEECCCC-eEEEEEEEEEECc----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334442 1 11112222 24567777 9999988888752 2334444222222556666666
Q ss_pred HHHHh
Q 003069 373 RHIRQ 377 (851)
Q Consensus 373 r~~e~ 377 (851)
+.++.
T Consensus 140 ~r~~~ 144 (148)
T 1t17_A 140 ARAQQ 144 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 35554
No 174
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=61.52 E-value=33 Score=32.51 Aligned_cols=110 Identities=8% Similarity=0.087 Sum_probs=66.1
Q ss_pred eeeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeEEeecceeCCCcEEEE
Q 003069 216 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVC 295 (851)
Q Consensus 216 R~~glV~~~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~fLRyckq~~~G~waVv 295 (851)
..+.+|.-.+..+-+.+.|.++|...+|..........| ....+.+++.+- -...|+-|..||...-+ +.-+..
T Consensus 10 ~~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~~~~~~~---~~~~~~a~l~vg--~~~~~~~~~s~~~~~~~-~~~I~~ 83 (161)
T 3p9v_A 10 NRDLEIPASYDEVFDLLADVPKSASHFPKVDKLVDLGNN---AYRWEMEKVGVD--KHAIQSVYACTYHADKE-AGKITW 83 (161)
T ss_dssp EEEEEESSCHHHHHHHHTCHHHHHTTSTTEEEEEEEETT---EEEEEECCBSSG--GGCBCCEEEEEEEEETT-TTEEEE
T ss_pred EEEEEEcCCHHHHHHHHhChhhhHhhCCCeEEEEEcCCC---ceEEEEEEEeee--eEEEEEEEEEEEEEcCC-CCEEEE
Confidence 456778889999999999999999999987665433322 101111222221 22347788888876543 333222
Q ss_pred EeecCCCCCCCCCCCCCCccceeecccceEEeecCCCceEEEEEEeeecc
Q 003069 296 ERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLD 345 (851)
Q Consensus 296 DvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d 345 (851)
. ++++ + |. +.+-.-.-+.+.++|.|+|+|.-+.|..
T Consensus 84 ~-~~~g----~-------~~--~~l~g~w~f~p~~~g~t~V~~~~~~e~~ 119 (161)
T 3p9v_A 84 S-PIKG----E-------GN--GVVSGSWTLSAKGDNATAVKFQTSAELT 119 (161)
T ss_dssp E-ECTT----S-------TT--EEEEEEEEEEESSSSCEEEEEEEEEEEE
T ss_pred E-EecC----c-------cc--eeEEEEEEEEECCCCeEEEEEEEEEEEc
Confidence 2 2222 1 10 1111234457788888999999888876
No 175
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=57.75 E-value=15 Score=29.49 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=25.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003069 91 KLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSA 127 (851)
Q Consensus 91 kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~~ 127 (851)
.++..+..+.+.|.+|...+++-+.|...|+++++++
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555666667777777777777777777788777764
No 176
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=54.90 E-value=12 Score=38.41 Aligned_cols=58 Identities=21% Similarity=0.350 Sum_probs=39.2
Q ss_pred CCCCccccccCCCcceEEEEecCCCCCCCCCCccCcCCCCceEE-EEeeecccccCChHHHHHHHhh--hccccccc
Q 003069 416 LDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVL-CAKASMLLQNVPPALLVRFLRE--HRSEWADY 489 (851)
Q Consensus 416 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~g~~~~g~Vl-~A~tS~~L~pvpp~~vf~FLrd--~R~eWd~~ 489 (851)
.+.+|..... .++|+|..+...+ . |.++ .-++..-+.+++|+.||++|.| .|.+||..
T Consensus 45 ~~~~W~~~~~--~~gv~vy~~~~~~---~-----------g~~~~~~K~~~~~~~~~~~~v~~~l~d~~~r~~Wd~~ 105 (255)
T 2e3n_A 45 GDANWQLVVE--EGEMKVYRREVEE---N-----------GIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETT 105 (255)
T ss_dssp TCTTEEEEEE--ETTEEEEEECCEE---T-----------TEECCCEEEEEEEETCCHHHHHHHHHCGGGHHHHCCS
T ss_pred CCCCcEEEEe--CCCEEEEEEEcCC---C-----------CceeeeEEEEEEEcCCCHHHHHHHHhCcchHhhhhhh
Confidence 3468987753 4679999887541 1 1111 1233344546999999999997 89999973
No 177
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=54.68 E-value=4.3 Score=37.47 Aligned_cols=67 Identities=25% Similarity=0.291 Sum_probs=45.2
Q ss_pred CCChhhhhhhhhhhhHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCC
Q 003069 59 NIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAPA 129 (851)
Q Consensus 59 gL~~rQVkvWFQNRRak~Kkrq~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~~~~ 129 (851)
||++.|+.-.=|-|| +-|.+.-+..++. +-..+.+.|..++..++.++++|..||+.|+.|++.+..
T Consensus 27 ~Ls~~e~~~lK~~RR-~lKNR~yAq~CR~---rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~ 93 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRR-TLKNRGYAASCRV---KRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRS 93 (107)
T ss_dssp TCCHHHHHHHHHHHH-HHHHHHHHHHHHH---HHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSS
T ss_pred CCCHHHHHHHHHHHH-hhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888777655444 3333333333332 223456777777788888888999999999999987654
No 178
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=53.79 E-value=98 Score=29.88 Aligned_cols=38 Identities=8% Similarity=0.062 Sum_probs=30.7
Q ss_pred eeeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccC
Q 003069 216 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPT 253 (851)
Q Consensus 216 R~~glV~~~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~ 253 (851)
..+.+|.-.+..+-+.+.|.++|-+.+|.+.-..+...
T Consensus 6 ~~si~I~a~~~~v~~lv~Dv~~~p~w~p~~~~~~~~~~ 43 (169)
T 3tvq_A 6 DNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQ 43 (169)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCTTEEEEEEEEE
T ss_pred EEEEEecCCHHHHHHHHHhhhHHHHHHhheeEEEEEec
Confidence 45667778899999999999999999997765555554
No 179
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=52.78 E-value=58 Score=28.84 Aligned_cols=39 Identities=13% Similarity=0.016 Sum_probs=25.4
Q ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 003069 90 RKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAP 128 (851)
Q Consensus 90 ~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~~~ 128 (851)
.+-+.....+..+...|+.+-.+|+.+.+.|+.|+..+.
T Consensus 32 ~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr 70 (87)
T 1hjb_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666666777777777777777777776654
No 180
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=51.32 E-value=56 Score=28.35 Aligned_cols=36 Identities=11% Similarity=0.002 Sum_probs=22.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 003069 93 SAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAP 128 (851)
Q Consensus 93 ~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~~~ 128 (851)
+.....+......|+.+-.+|+.+...|+.|+..+.
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555556666666667777777777766543
No 181
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=50.02 E-value=13 Score=30.20 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhHHHHHhhcc
Q 003069 105 RLQKQVSHLVYENGYMRQQLHS 126 (851)
Q Consensus 105 ~l~~e~~~L~~EN~~Lk~el~~ 126 (851)
.|+.++.+|..||..|++++..
T Consensus 26 ~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 26 SLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555543
No 182
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=48.35 E-value=47 Score=30.21 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhHHHHHhhccCC
Q 003069 106 LQKQVSHLVYENGYMRQQLHSAP 128 (851)
Q Consensus 106 l~~e~~~L~~EN~~Lk~el~~~~ 128 (851)
.+.++++|+.|+++||..+..+.
T Consensus 73 ~~~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 73 LREDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566778888888887776543
No 183
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=48.30 E-value=85 Score=29.32 Aligned_cols=96 Identities=5% Similarity=-0.160 Sum_probs=69.8
Q ss_pred hcCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccc-cccCChhcHHHHHHHHHHHHHhCcccCCCeeEEcCC
Q 003069 739 WHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIML-DKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSM 817 (851)
Q Consensus 739 ~~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lps-r~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~ 817 (851)
=..|+.|+.=+. |=...|-|+++.++.+++-+++++-+- +..+.-....+=+..+.+..++|-...-.+-.++..
T Consensus 24 d~l~~Gii~lD~----~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~l~~~~~~v~~~~ 99 (125)
T 1nwz_A 24 DGLAFGAIQLDG----DGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYTFDYQ 99 (125)
T ss_dssp TTCSSEEEEEET----TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEEECTT
T ss_pred hccCceEEEECC----CCEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCceeEEEEEEEcCC
Confidence 346777776554 367999999999999999999999887 445555555554555555555999887778888999
Q ss_pred CCeEEEcceEEeEeecCCCCeeEE
Q 003069 818 GRAVSYEQAVAWKVLDDDDSNHCL 841 (851)
Q Consensus 818 Grrf~i~~a~vW~l~D~~g~~~Gq 841 (851)
|+++.++=.. +.+++|...|.
T Consensus 100 ~~p~~v~i~l---~~~~~~~~~~i 120 (125)
T 1nwz_A 100 MTPTKVKVHM---KKALSGDSYWV 120 (125)
T ss_dssp SCCEEEEEEE---EECSSSSEEEE
T ss_pred CCEEEEEEEE---EEcCCCCEEEE
Confidence 9988875433 34666665553
No 184
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=47.31 E-value=27 Score=26.02 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003069 95 MNKLLMEENDRLQKQVSHLVYENGYMRQ 122 (851)
Q Consensus 95 en~~l~ee~~~l~~e~~~L~~EN~~Lk~ 122 (851)
+|+.+..+.+.-+.++.+|+.||..|++
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 4555666666666667777777777653
No 185
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=47.25 E-value=37 Score=26.20 Aligned_cols=34 Identities=32% Similarity=0.382 Sum_probs=25.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 92 LSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 92 l~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
|...-+.+...+.+|+..+.-|..||+.|||-+.
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 4445566666777788888889999999998653
No 186
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=45.08 E-value=36 Score=26.35 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=17.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003069 92 LSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (851)
Q Consensus 92 l~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el 124 (851)
++..|-.+..+..++++-+..|+.|.++|..|.
T Consensus 15 lkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 15 LKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455555556666666666553
No 187
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=44.91 E-value=93 Score=29.32 Aligned_cols=95 Identities=6% Similarity=-0.105 Sum_probs=69.2
Q ss_pred cCCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccc-cccCChhcHHHHHHHHHHHHHhCcccCCCeeEEcCCC
Q 003069 740 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIML-DKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMG 818 (851)
Q Consensus 740 ~~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lps-r~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~G 818 (851)
..|+.|+.=+. +=...|-|+++..+.+++-+++++-.- +..+.-....+=+..+.+..++|-+..-.+-.++..|
T Consensus 30 ~l~~GiivlD~----dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~l~~~~~yv~~~~~ 105 (129)
T 1mzu_A 30 ALPVGAIQVDG----SGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFVFDFQM 105 (129)
T ss_dssp GCSSEEEEEET----TCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEEEECSS
T ss_pred ccCceEEEECC----CCeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCceeEEEEEEEcCCC
Confidence 36777776553 367999999999999999999999887 4455555555545555565669998877788889999
Q ss_pred CeEEEcceEEeEeecCCCCeeEE
Q 003069 819 RAVSYEQAVAWKVLDDDDSNHCL 841 (851)
Q Consensus 819 rrf~i~~a~vW~l~D~~g~~~Gq 841 (851)
+++.++=.. +.+++|...|.
T Consensus 106 ~p~~v~i~l---~~~~~~~~~~i 125 (129)
T 1mzu_A 106 APVRVQIRM---QNAGVPDRYWI 125 (129)
T ss_dssp CEEEEEEEE---EECSSTTEEEE
T ss_pred CEEEEEEEE---EEcCCCCEEEE
Confidence 988875333 34566665553
No 188
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=44.54 E-value=21 Score=28.29 Aligned_cols=46 Identities=22% Similarity=0.305 Sum_probs=32.8
Q ss_pred CcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhh
Q 003069 20 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQ 70 (851)
Q Consensus 20 kr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQ 70 (851)
++.+||+++.......+.... +......++|+++ |+++.+|..|..
T Consensus 2 ~r~~ys~efK~~~~~~~~~g~-s~~~~~~~vA~~~----gIs~~tl~~W~~ 47 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESYRNDN-DCKGNQRATARKY----NIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCCHHHHHHHHHHHHHCT-TTTTCHHHHHHHT----TSCHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHHHcCC-CcchHHHHHHHHH----CcCHHHHHHHHH
Confidence 355799998877755555432 2111266899999 999999999964
No 189
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=43.61 E-value=60 Score=30.98 Aligned_cols=40 Identities=10% Similarity=0.028 Sum_probs=17.6
Q ss_pred HHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003069 85 LQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (851)
Q Consensus 85 l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el 124 (851)
++.+...++..++.+..++.+++++.+.|..++.+|..++
T Consensus 94 lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 94 LKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444443
No 190
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=42.26 E-value=32 Score=25.46 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 99 LMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 99 l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
++..+...++++.+|+.+|+.|.+|+.
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 455566667777788888888887763
No 191
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.08 E-value=37 Score=27.35 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=19.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 94 AMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 94 ~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
.+.+.|+.++..++.++..|..+++.|+.++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555666666666666666666666654
No 192
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=40.73 E-value=30 Score=36.28 Aligned_cols=33 Identities=27% Similarity=0.189 Sum_probs=16.3
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003069 89 NRKLSAMNKLLMEENDRLQKQVSHLVYENGYMR 121 (851)
Q Consensus 89 n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk 121 (851)
...+.+.|+.|+++..++.+|+.+|+.|+++|+
T Consensus 63 l~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 63 IDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444555555555555555544554444443
No 193
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=40.58 E-value=19 Score=33.28 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhcc
Q 003069 103 NDRLQKQVSHLVYENGYMRQQLHS 126 (851)
Q Consensus 103 ~~~l~~e~~~L~~EN~~Lk~el~~ 126 (851)
.++|..++++|+.||..||+++.+
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466889999999999999999976
No 194
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=38.77 E-value=26 Score=30.20 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=27.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhc
Q 003069 93 SAMNKLLMEENDRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 93 ~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
+.+-+.|++.+.+|.....+|..||..||+-..
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~~as 46 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKTLAS 46 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345678899999999999999999999997643
No 195
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=37.39 E-value=1.3e+02 Score=28.40 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=27.1
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhh
Q 003069 19 TKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNR 72 (851)
Q Consensus 19 rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNR 72 (851)
..+..|+.+++..|.. ... .+.+ |++-.+|+-.+...
T Consensus 50 ~g~R~Y~~~dl~~l~~------------I~~-lr~~----G~sL~eIk~~l~~~ 86 (148)
T 3gpv_A 50 KGDRIFNEEALKYLEM------------ILC-LKNT----GMPIQKIKQFIDWS 86 (148)
T ss_dssp TCCEEBCHHHHHHHHH------------HHH-HHTT----TCCHHHHHHHHHHH
T ss_pred CCCeecCHHHHHHHHH------------HHH-HHHc----CCCHHHHHHHHHhh
Confidence 4566789999888843 233 4777 99999999988754
No 196
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=36.90 E-value=1.1e+02 Score=23.59 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=27.3
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccC
Q 003069 89 NRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSA 127 (851)
Q Consensus 89 n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~~ 127 (851)
|.-++..-..+++++-++++..|.|..-.+.|++|+.|+
T Consensus 5 naylrkkiarlkkdnlqlerdeqnlekiianlrdeiarl 43 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARL 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHH
Confidence 455666666777777777777777777777777777654
No 197
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=36.58 E-value=73 Score=29.72 Aligned_cols=65 Identities=14% Similarity=0.084 Sum_probs=36.4
Q ss_pred CChhhhhhhhhhhhHH-----HHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003069 60 IEPKQIKVWFQNRRCR-----EKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHS 126 (851)
Q Consensus 60 L~~rQVkvWFQNRRak-----~Kkrq~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~ 126 (851)
|.....+.|=+|+--. .++.+... +..-.+|+.+.+.+.+.......++++||.+|..|+..+..
T Consensus 41 l~~~eaQAaTCNqTV~tL~~SL~~ekaq~--q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 41 FQDVEAQAATANHTVMALMASLDAEKAQG--QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 4455566677776322 22211111 23344566666666666666677777777777777766654
No 198
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=36.04 E-value=1.2e+02 Score=27.12 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003069 74 CREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYE 116 (851)
Q Consensus 74 ak~Kkrq~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~E 116 (851)
|+.|+.++...++.++..+..+-+.+++|+.++.++.+.++..
T Consensus 42 CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k 84 (90)
T 2wt7_B 42 CRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVK 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556656666666666666666666666666655555544433
No 199
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=35.67 E-value=48 Score=35.70 Aligned_cols=65 Identities=8% Similarity=0.118 Sum_probs=47.3
Q ss_pred hHHHHHHHhc-CCCeEeecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHH
Q 003069 731 GDALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAK 799 (851)
Q Consensus 731 ~~~~~~~L~~-~~~avl~h~~~~~~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~ 799 (851)
.+++.+.+.. .+.+|+.-+ +|-.|.|.|.+..++++|+-+||++.+..--..|.++.+-...|..
T Consensus 84 ~~~~~~~~l~a~~~~i~v~~----~~G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~~ 149 (361)
T 4f3l_A 84 NEEFTQLMLEALDGFFLAIM----TDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILST 149 (361)
T ss_dssp HHHHHHHHHHHTTEEEEEEE----TTSBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCceEEEEc----CCccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhcc
Confidence 3555555555 344444332 3678999999999999999999999987766678887776666654
No 200
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=35.61 E-value=2e+02 Score=26.07 Aligned_cols=46 Identities=35% Similarity=0.369 Sum_probs=33.7
Q ss_pred HHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003069 79 RKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (851)
Q Consensus 79 rq~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el 124 (851)
..++.+++.......+.-..+..+.++|..+-+.|+.||+.-+++=
T Consensus 50 e~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~~~ 95 (104)
T 3s9g_A 50 EDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQQE 95 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3445555555555666677788888888888899999998887763
No 201
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=35.50 E-value=44 Score=35.67 Aligned_cols=76 Identities=14% Similarity=0.235 Sum_probs=55.1
Q ss_pred CCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCcc-cCCCeeEE-cCCCCeEEEcceEEeEee
Q 003069 755 SPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFA-YLPGGMCV-SSMGRAVSYEQAVAWKVL 832 (851)
Q Consensus 755 dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~-~~y~GvRi-ss~Grrf~i~~a~vW~l~ 832 (851)
|=.|+|.|.++..+++|+-+||++.+.---.-|.++..-.+.+.++++.|-. ....=.|+ .+.|.-.|++ +-|.++
T Consensus 174 dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwve--t~~~~~ 251 (309)
T 3gdi_A 174 NCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYITLD--TSWSSF 251 (309)
T ss_dssp TCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEEEE--EEEEEE
T ss_pred CCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEEEE--EEEEEE
Confidence 5789999999999999999999998765555677777777778888875432 11012344 7888888885 456553
No 202
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=35.22 E-value=48 Score=29.92 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=37.8
Q ss_pred CcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHH
Q 003069 20 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCR 75 (851)
Q Consensus 20 kr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak 75 (851)
+|.+||.++...+-..+.++..+. ..++|+++ |++...|.-|..+++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~----gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRF----NIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHH----TCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHh----CCCHHHHHHHHhchhhh
Confidence 567899999988877775555443 33689999 99999999998776543
No 203
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=34.41 E-value=26 Score=25.89 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=31.0
Q ss_pred cCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhh
Q 003069 23 RYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRR 73 (851)
Q Consensus 23 r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRR 73 (851)
.+++++...+...+... ....++|+.+ |++...|.-|+....
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~l----gvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIF----GIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTT----SCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHH----CCCHHHHHHHHHHcc
Confidence 56777777666666543 2356889999 999999999986543
No 204
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=33.02 E-value=1.2e+02 Score=32.39 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=56.6
Q ss_pred CCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhCccc--CCCeeE-EcCCCCeEEEcceEEeE
Q 003069 754 ASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAY--LPGGMC-VSSMGRAVSYEQAVAWK 830 (851)
Q Consensus 754 ~dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~qG~~~--~y~GvR-iss~Grrf~i~~a~vW~ 830 (851)
.|=.|+|.|.++.++++|+-+||++.+..--.-|.++..-.+.+.++++.|-.. ...=.| ..+.|.-.|++ +-|.
T Consensus 182 ~dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~vwve--t~~~ 259 (317)
T 4dj3_A 182 PGCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEYVILD--SSWS 259 (317)
T ss_dssp TTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCEEEEE--EEEE
T ss_pred CCCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCEEEEE--EEEE
Confidence 367899999999999999999999987765556777777777788888764331 111234 37788888886 3455
Q ss_pred e-ecC
Q 003069 831 V-LDD 834 (851)
Q Consensus 831 l-~D~ 834 (851)
+ +|.
T Consensus 260 ~~~np 264 (317)
T 4dj3_A 260 SFVNP 264 (317)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 4 443
No 205
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=33.00 E-value=1.8e+02 Score=31.11 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=53.6
Q ss_pred CCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHh-CcccCCCeeE-EcCCCCeEEEcceEEeEe
Q 003069 755 SPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQ-GFAYLPGGMC-VSSMGRAVSYEQAVAWKV 831 (851)
Q Consensus 755 dP~F~YaN~aAL~l~e~~w~el~~lpsr~sae~~~r~er~~lL~~v~~q-G~~~~y~GvR-iss~Grrf~i~~a~vW~l 831 (851)
|=.|+|.|.++..+++|+-+||++.+.---.-|.++..-.+.+.++++. |-.....=.| ..+.|.-.|++- -|.+
T Consensus 185 dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwvet--~~~~ 261 (320)
T 4dj2_A 185 SCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVTMDT--SWAG 261 (320)
T ss_dssp TCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEEEEEC--EEEE
T ss_pred CceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEEEEEE--EEEE
Confidence 5789999999999999999999998765555677777777777777773 4322111233 367788888753 4444
No 206
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=32.73 E-value=50 Score=28.39 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhccCC
Q 003069 97 KLLMEENDRLQKQVSHLVYENGYMRQQLHSAP 128 (851)
Q Consensus 97 ~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~~~ 128 (851)
..|.+++..++.+..+|+.+|..|++++....
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566677788888889999999999887643
No 207
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=32.37 E-value=1.1e+02 Score=27.71 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=37.2
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003069 22 VRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (851)
Q Consensus 22 ~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kk 78 (851)
..+++.|.+.+...|-... .-.++|..+ |+++..|+.+...=|.+.|+
T Consensus 21 ~~L~~~~r~vl~l~y~~g~-----s~~EIA~~l----giS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 21 ALLTDKQMNYIELYYADDY-----SLAEIADEF----GVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GGSCHHHHHHHHHHHHTCC-----CHHHHHHHH----TCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcCC-----CHHHHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 3689999999998765542 467889999 99999999998765555544
No 208
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=32.13 E-value=48 Score=23.84 Aligned_cols=41 Identities=10% Similarity=0.136 Sum_probs=30.7
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhh
Q 003069 22 VRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQN 71 (851)
Q Consensus 22 ~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQN 71 (851)
..+++++...+...+.... ...++|+.+ |++...|+.|...
T Consensus 4 ~~l~~~~~~~i~~~~~~g~-----s~~~IA~~l----gis~~Tv~~~~~~ 44 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLNV-----SLHEMSRKI----SRSRHCIRVYLKD 44 (51)
T ss_dssp CCCCHHHHHHHHHHHHTTC-----CHHHHHHHH----TCCHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHcCC-----CHHHHHHHH----CcCHHHHHHHHhh
Confidence 4678888766666665432 366889999 9999999999854
No 209
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=32.04 E-value=1.2e+02 Score=28.81 Aligned_cols=58 Identities=9% Similarity=0.059 Sum_probs=33.8
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003069 69 FQNRRCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHS 126 (851)
Q Consensus 69 FQNRRak~Kkrq~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~ 126 (851)
|+-++.-..-.+....+..+...++.+......+++.+.+++..|+.++..|+.++.+
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333333333334444455566666666666666777777777777777777654
No 210
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.68 E-value=1.4e+02 Score=24.65 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHH
Q 003069 73 RCREKQRKEASRLQTVNRKLSAMNKLLMEEND 104 (851)
Q Consensus 73 Rak~Kkrq~~~~l~~~n~kl~~en~~l~ee~~ 104 (851)
|++.||+.....++.+-..|..+|..|..+..
T Consensus 23 rsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~ 54 (63)
T 2dgc_A 23 RSRARKLQRMKQLEDKVEELLSKNYHLENEVA 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544444444444444444444443333
No 211
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=30.58 E-value=38 Score=27.13 Aligned_cols=22 Identities=50% Similarity=0.638 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHhhc
Q 003069 104 DRLQKQVSHLVYENGYMRQQLH 125 (851)
Q Consensus 104 ~~l~~e~~~L~~EN~~Lk~el~ 125 (851)
+++-+|+..|+.||..||+||+
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHH
No 212
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=30.38 E-value=3.6e+02 Score=25.54 Aligned_cols=111 Identities=9% Similarity=0.100 Sum_probs=64.3
Q ss_pred eeeeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCCCccHHHHHHHhhc-ccccccccceeeEEeecceeCCCcEEE
Q 003069 216 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTY-APTTLAAARDFWLLRYSTSLEDGSLVV 294 (851)
Q Consensus 216 R~~glV~~~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~-v~SPLvp~Re~~fLRyckq~~~G~waV 294 (851)
..+.+|.-.+..+-+.+-|.++|-+.+|-..-..+++.+.++ +.+.+. ..+.- -.++-++.|+.-. .++.-+
T Consensus 6 ~~si~I~a~~~~V~~lV~Dve~yP~~~p~~~~~~vl~~~~~~----~~~rl~~~~~~~-G~~~~~ts~~~~d-~~~~~I- 78 (159)
T 3tl1_A 6 DNEITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDK----VTFRLTMHPDAD-GKVWSWVSERVAD-PVTRTV- 78 (159)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEEECSSE----EEEEEEECCCTT-SCCCEEEEEEEEE-TTTTEE-
T ss_pred EEEEEecCCHHHHHHHHHhHHHhhhhhhCceEEEEEecCCCE----EEEEEEEEeccC-ceEEEEEEEEEEc-CCCCEE-
Confidence 457788889999999999999999999977555555543221 112221 01111 1344445566432 333332
Q ss_pred EEeecCCCCCCCCCCCCCCccceeecccceEEeecCCCceEEEEEEeeeccCC
Q 003069 295 CERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAW 347 (851)
Q Consensus 295 vDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~ 347 (851)
+..+. .++| | +.+=...-+.+.++ +|+|+|.-+.++++.
T Consensus 79 -~~~~~--~~gP-------f---~~l~g~W~f~p~~~-gt~V~~~~df~~~~~ 117 (159)
T 3tl1_A 79 -RAQRV--ETGP-------F---QYMNIVWEYAETAE-GTVMRWTQDFAMKPD 117 (159)
T ss_dssp -EEEES--SCTT-------E---EEEEEEEEEEEETT-EEEEEEEEEEEECTT
T ss_pred -EEEEc--cCCC-------h---hhccCEEEEEECCC-CEEEEEEEEEEecCC
Confidence 22211 1112 2 22334455677777 599999999999765
No 213
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=28.58 E-value=1.4e+02 Score=26.10 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=30.8
Q ss_pred HHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003069 80 KEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (851)
Q Consensus 80 q~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el 124 (851)
.+...++.+|..+..++..++...+.+..+.++|+.|...-++.+
T Consensus 27 mEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 27 MEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 355567777788888888877777777777777777755444443
No 214
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=28.27 E-value=1.7e+02 Score=26.33 Aligned_cols=48 Identities=15% Similarity=0.045 Sum_probs=36.7
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHH
Q 003069 22 VRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 78 (851)
Q Consensus 22 ~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kk 78 (851)
..+++.|.+.+...|-... .-.++|..+ |+++..|+.+...=|.+.|+
T Consensus 24 ~~L~~~~r~vl~l~~~~g~-----s~~EIA~~l----giS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 24 SLLTNKQRNYLELFYLEDY-----SLSEIADTF----NVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GGSCHHHHHHHHHHHTSCC-----CHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcCC-----CHHHHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 3588899999988765542 467889999 99999999988755555544
No 215
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.21 E-value=1.5e+02 Score=25.21 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHhHHHHHhh
Q 003069 106 LQKQVSHLVYENGYMRQQL 124 (851)
Q Consensus 106 l~~e~~~L~~EN~~Lk~el 124 (851)
++...+.|..||..|++++
T Consensus 41 le~~~~~l~~en~~Lr~~i 59 (70)
T 1gd2_E 41 LKELHSSTTLENDQLRQKV 59 (70)
T ss_dssp HHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444433
No 216
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=26.26 E-value=2.3e+02 Score=22.73 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhHHHHHhh
Q 003069 104 DRLQKQVSHLVYENGYMRQQL 124 (851)
Q Consensus 104 ~~l~~e~~~L~~EN~~Lk~el 124 (851)
..|+.+...|+.++..|++++
T Consensus 32 ~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 32 AVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555555555544
No 217
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=26.23 E-value=40 Score=35.37 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=34.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCC
Q 003069 91 KLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHSAPA 129 (851)
Q Consensus 91 kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~~~~ 129 (851)
.++.++..+.+.|+++..++++++.|..+||+|++++..
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 478888999999999999999999999999999988543
No 218
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=25.83 E-value=1.5e+02 Score=26.16 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003069 79 RKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQ 122 (851)
Q Consensus 79 rq~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~ 122 (851)
+.-...-+..-..--.+|+.|.++.+.++.++..|+.||..|+.
T Consensus 23 k~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 23 KEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 219
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=25.78 E-value=4.2 Score=37.49 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003069 73 RCREKQRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMR 121 (851)
Q Consensus 73 Rak~Kkrq~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk 121 (851)
+||.||..+...++.++..|..+.+.+.+|+..+..+++.++.+...|+
T Consensus 51 ~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~L~ 99 (107)
T 3a5t_A 51 SCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777777776666665555544444443
No 220
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=25.35 E-value=72 Score=27.58 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003069 97 KLLMEENDRLQKQVSHLVYENGYMRQQLHS 126 (851)
Q Consensus 97 ~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~ 126 (851)
..+.++..++..+.++|+.||..|+++|+.
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445666667777778888888888888764
No 221
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=25.14 E-value=2e+02 Score=23.05 Aligned_cols=36 Identities=28% Similarity=0.222 Sum_probs=22.0
Q ss_pred HHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 003069 85 LQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYM 120 (851)
Q Consensus 85 l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~L 120 (851)
++..+..+.+.|..|.+...+...++..|+.|..+|
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555666666666666666666666666665554
No 222
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=24.91 E-value=1.9e+02 Score=25.49 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003069 95 MNKLLMEENDRLQKQVSHLVYENGYMRQ 122 (851)
Q Consensus 95 en~~l~ee~~~l~~e~~~L~~EN~~Lk~ 122 (851)
+|+.|.+++..++.++..|+.||..||.
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555553
No 223
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=23.55 E-value=2.3e+02 Score=24.90 Aligned_cols=37 Identities=27% Similarity=0.196 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHH
Q 003069 78 QRKEASRLQTVNRKLSAMNKLLMEENDRLQKQVSHLV 114 (851)
Q Consensus 78 krq~~~~l~~~n~kl~~en~~l~ee~~~l~~e~~~L~ 114 (851)
||+.....-.+|.+|....+.+.+++..++++.+.|+
T Consensus 37 RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 37 RRKALYEALKENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444566666666666666666666555554
No 224
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=22.56 E-value=2.5e+02 Score=21.49 Aligned_cols=40 Identities=20% Similarity=0.219 Sum_probs=20.2
Q ss_pred HHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 003069 85 LQTVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQL 124 (851)
Q Consensus 85 l~~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el 124 (851)
+..+-..+..+|+.++..+-.-..-+.-|..|.+.||..+
T Consensus 8 lenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 8 LENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666655432222333445555555544
No 225
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.92 E-value=3.2e+02 Score=30.87 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003069 98 LLMEENDRLQKQVSHLVYENGYMRQQLHS 126 (851)
Q Consensus 98 ~l~ee~~~l~~e~~~L~~EN~~Lk~el~~ 126 (851)
.++...++.+++.++++.|++.+++|+..
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33333334444555566666666555543
No 226
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=21.72 E-value=62 Score=27.70 Aligned_cols=36 Identities=28% Similarity=0.465 Sum_probs=24.2
Q ss_pred HHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHHH
Q 003069 30 EALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS 83 (851)
Q Consensus 30 ~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~~~ 83 (851)
..+.-.|+.+|||++.--.+ |+ .|||-+|++++...
T Consensus 19 RiIkiLyQSNP~P~p~GTrq-aR-----------------RNRRRRWR~RQrQI 54 (72)
T 3lph_A 19 RLIKFLYQSNPPPNPEGTRQ-AR-----------------RNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHTCCCCCCCSCHH-HH-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCchH-HH-----------------HHHHHHHHHHHHHH
Confidence 45566699999998652222 22 48999999876543
No 227
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.59 E-value=1.7e+02 Score=33.21 Aligned_cols=40 Identities=10% Similarity=-0.019 Sum_probs=20.2
Q ss_pred hhhhHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHhhcc
Q 003069 87 TVNRKLSAMNKLLMEENDRLQKQVSHLVYENGYMRQQLHS 126 (851)
Q Consensus 87 ~~n~kl~~en~~l~ee~~~l~~e~~~L~~EN~~Lk~el~~ 126 (851)
.+...++...+..++...++++|.++++.|...|.+++++
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344444445555555555555555555555555555543
No 228
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=21.58 E-value=78 Score=29.33 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=23.4
Q ss_pred HHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhhhhHHHHHHHHH
Q 003069 30 EALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 82 (851)
Q Consensus 30 ~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kkrq~~ 82 (851)
..+.-.|+.+|||+.. |-. |- -.|||.|||+++..
T Consensus 16 RiIkiLyQSNPyP~pe-------------GTR--qa---RRNRRRRWR~RQrQ 50 (115)
T 2x7l_M 16 RLIKFLYQSNPPPNPE-------------GTR--QA---RRNRRRRWRERQRQ 50 (115)
T ss_dssp HHHHHHHHSSCCCCCC-------------CCT--TT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCC-------------Cch--hh---hHhHHHHHHHHHHH
Confidence 3455569999999875 211 11 15999999987654
No 229
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=21.47 E-value=4.6e+02 Score=23.80 Aligned_cols=118 Identities=9% Similarity=0.004 Sum_probs=62.6
Q ss_pred eeEEeeChhhHHHHhcCccchhhcCCcceeeeeccCCCccHHHHHHHhhcccccccccceeeE--EeecceeCCCcEEEE
Q 003069 218 CGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWL--LRYSTSLEDGSLVVC 295 (851)
Q Consensus 218 ~glV~~~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~G~lqLm~aE~~v~SPLvp~Re~~f--LRyckq~~~G~waVv 295 (851)
+-.|...+.++-+.|.|.+.|.+-+|.+.-+.....| .. ...|.+ +.-+.+.-+. ++|...-....+++.
T Consensus 8 ~~~i~ap~e~Vw~~l~D~e~~~~w~p~~~~~~~~~~~---~~---~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~ 79 (162)
T 2pcs_A 8 SIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGED---KY---KADLQI--GIAAVKGKYDAIIEVTDIKPPYHYKLL 79 (162)
T ss_dssp EEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEETT---EE---EEEEEE--CCGGGCEEEEEEEEEEEEETTTEEEEE
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhCCCceEeEEeCCC---eE---EEEEEE--EeeeEEEEEEEEEEEEecCCCcEEEEE
Confidence 4567788999999999999998888877555544322 10 011111 1112222222 244443444555444
Q ss_pred EeecCCCCCCCCCCCCCCccceeecccceEEeecCCCceEEEEEEeeeccCCCccccchhhh
Q 003069 296 ERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLY 357 (851)
Q Consensus 296 DvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~ 357 (851)
-..-+. + ++.+ .---+-+.+..+|+|+|+|.-.+++... +..+..+++
T Consensus 80 ~~~~~~----~------~~~~---~~~~~~l~~~~~~gT~v~~~~~~~~~g~-l~~~~~~l~ 127 (162)
T 2pcs_A 80 VNGEGG----P------GFVN---AEGVIDLTPINDECTQLTYTYSAEVGGK-VAAIGQRML 127 (162)
T ss_dssp EEEEET----T------EEEE---EEEEEEEEESSSSEEEEEEEEEEEEESG-GGGGCHHHH
T ss_pred EEecCC----C------ccEE---EEEEEEEEecCCCcEEEEEEEEEEECCC-HHHhhHHHH
Confidence 332221 0 1111 1122345666778899999877776433 344555555
No 230
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=21.03 E-value=1.2e+02 Score=25.85 Aligned_cols=43 Identities=9% Similarity=0.198 Sum_probs=31.8
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhh
Q 003069 19 TKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQ 70 (851)
Q Consensus 19 rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQ 70 (851)
+++.+|+.++....-..+... ....++|+++ |+++..|..|..
T Consensus 18 ~~~~~ys~e~k~~~v~~~~~g-----~s~~~iA~~~----gIs~sTl~rW~k 60 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIHDG-----ESKASVARDI----GVPESTLRGWCK 60 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHHHT-----CCHHHHHHHH----TCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCC-----CCHHHHHHHH----CcCHHHHHHHHH
Confidence 345689999876665666433 1356889999 999999999963
No 231
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=20.75 E-value=5.2e+02 Score=24.12 Aligned_cols=36 Identities=8% Similarity=0.176 Sum_probs=26.8
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhCCccCCCChhhhhhhhhh
Q 003069 19 TKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQN 71 (851)
Q Consensus 19 rkr~r~T~~Ql~~LE~~F~~~~~Ps~~~R~~LA~~L~~~~gL~~rQVkvWFQN 71 (851)
..+..|+.+++..|.. ... .+.+ |++-.+|+-.+..
T Consensus 36 ~g~R~Y~~~dl~~l~~------------I~~-lr~~----G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 36 SGVRKFGAEDLRWILF------------TRQ-MRRA----GLSIEALIDYLAL 71 (142)
T ss_dssp TSCBCBCHHHHHHHHH------------HHH-HHHT----TCCHHHHHHHHHH
T ss_pred CCCeeeCHHHHHHHHH------------HHH-HHHc----CCCHHHHHHHHHH
Confidence 4567899999999843 233 4677 9999998887764
No 232
>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A
Probab=20.53 E-value=2.8e+02 Score=25.74 Aligned_cols=35 Identities=3% Similarity=-0.130 Sum_probs=26.8
Q ss_pred eeeEEeeChhhHHHHhcCccchhhcCCcceeeeec
Q 003069 217 ACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVI 251 (851)
Q Consensus 217 ~~glV~~~~~~LVe~lmD~~~W~~~f~~~~~l~~~ 251 (851)
.+..|...+.++-+++.|-+.|-+-+|.+......
T Consensus 6 ~si~I~Ap~~~VW~~l~d~~~~~~w~p~v~~~~~~ 40 (146)
T 3f08_A 6 TSMEIFGSTEQVWQLIGGFNSLPDWLPYIPSSKLT 40 (146)
T ss_dssp EEEEESSCHHHHHHHHCSTTCHHHHCTTCCEEEEE
T ss_pred EEEEEeCCHHHHHHHHhccccHHHhCCCeEEEEEe
Confidence 45667778999999999999988788876544443
Done!