BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003070
(850 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|147803027|emb|CAN66169.1| hypothetical protein VITISV_000145 [Vitis vinifera]
Length = 1032
Score = 1009 bits (2610), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/897 (59%), Positives = 665/897 (74%), Gaps = 61/897 (6%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHH-FINPNTFWQNH 59
MREAGFSST +KN++EDSSASSVFQCY+SSGG VFSSPCSPS +E H INP+TFWQ H
Sbjct: 150 MREAGFSSTAVKNNLEDSSASSVFQCYSSSGG-VFSSPCSPSPTETHRDIINPSTFWQTH 208
Query: 60 AL----------FSSQKPASVS--------KEDIKLVFEVFLRKKRRNTVIVGDCLSITD 101
L FS QK S + KED+KLV EV LRKKRRNTVIVGD +S T+
Sbjct: 209 ILAYSSEQNPLLFSPQKKLSSNTITDSTSVKEDLKLVLEVLLRKKRRNTVIVGDSVSTTE 268
Query: 102 ALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVG 161
LV + MGR+ERG+VP+ELK H +KF F+PVTLRFMK+EEVEMNL++LKRKVDSL S G
Sbjct: 269 GLVAELMGRIERGEVPEELKSAHFVKFQFSPVTLRFMKREEVEMNLSDLKRKVDSLASGG 328
Query: 162 GGAIIYTG-DLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVW 220
GG I DLKWTV+ S+ + F AS YNPI+HLV+E+G+L+SD + S+TRVW
Sbjct: 329 GGGAIIYAGDLKWTVEAAVSDRDGGFPSGEASAYNPIDHLVAEIGRLLSD-YTTSNTRVW 387
Query: 221 LMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQ-V 279
LMATASYQTYM+CQM+QP LEIQWALQAVS+PSGGLGLSLH+SSVH+SR SQN + V
Sbjct: 388 LMATASYQTYMRCQMKQPSLEIQWALQAVSVPSGGLGLSLHASSVHDSR---SQNQAHHV 444
Query: 280 WETKPFAIKEEEDHKLNCCAECTSNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQKDELV 339
ETKPFA KEE D KL+CCAECT+NYE+E LFKSGQ+KLLP WLQ H A QKD+LV
Sbjct: 445 LETKPFAAKEEHD-KLSCCAECTANYEKEVGLFKSGQQKLLPSWLQAHGV-EARQKDDLV 502
Query: 340 EMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSI 399
E+RRKWNR CHSLHQGR Q+ SS++++NQ+L GKS SY S+YPWWP+Q+SIF D NSI
Sbjct: 503 ELRRKWNRLCHSLHQGRSNQNHLSSSMFSNQNLLGKSYSYTSSYPWWPNQNSIFPDLNSI 562
Query: 400 SFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGKEVKIT 459
SF SA+KP+++S+ V +FRRQQSC IEF+FGN K Q VEP LD LK EGK+VKIT
Sbjct: 563 SFTNSALKPNHASSLVPRFRRQQSCH-IEFSFGNVMHKQQSVEPSLDCLKKTEGKDVKIT 621
Query: 460 LALGNSELSDSAKL---------QRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKAT 510
LALG S SDS KL + D+ K+L+ENVPWQ ++I I E L++ KS+KK T
Sbjct: 622 LALGTSVYSDSGKLPELKGEKTIRLRDICKLLEENVPWQSEAISPIAEALIDSKSSKKET 681
Query: 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLV 570
W LLQGND+IGKRRLA +IAESVFGS DL+F ++MRK ++GV+ SE+L L+ ++KLV
Sbjct: 682 WLLLQGNDSIGKRRLAHAIAESVFGSADLVFRMNMRKLDNGVTPCSEILTEALRAHQKLV 741
Query: 571 VLVEDIDLADPQFIKILADGFET----------ENFGKVIFVLTKGDSSNYEERIENQDS 620
V+VED+D A+PQF+K LADG ET +FG+ IF+LT GDSS+Y+ER N+ S
Sbjct: 742 VMVEDVDFAEPQFMKFLADGCETGEFRDSSKREGSFGQAIFILTTGDSSSYQERKGNKSS 801
Query: 621 VINMTLKVNER-----NQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKK- 674
VI+M L++N N DHKRKAEW+ +N+TKSPR DE+E + ++++ GN K
Sbjct: 802 VIHMKLQINLTIPTLGTPNMDHKRKAEWDLSNRTKSPRTDEEEGSCLISVE---PGNSKI 858
Query: 675 -DFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNR 733
+F+RQ SFNTLDLN++A DEDDE + KP ELSPISSDLTRE T+ +GFL+ I+NR
Sbjct: 859 LEFTRQLSFNTLDLNIRA-DEDDESKDKPRELSPISSDLTRETATDIQNPHGFLESIENR 917
Query: 734 FVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSLFE 793
F F R + D ++ FL+K+K SF+ + +N V+FSVE+++LEEVL G F NSLFE
Sbjct: 918 FTFKRKADQDREMREAFLSKIKGSFEVGYDSENTVSFSVEQKLLEEVLAGCDSFLNSLFE 977
Query: 794 KWLKEVFQTSLEAVKIGGKGGGIEIRLCFGCKNDKVFANYGFGDSCLPKKIQIALLD 850
KWLKEVFQTS++ VKIGGK G+E+RLC K +K + GF S LPKKIQ++ +D
Sbjct: 978 KWLKEVFQTSVKTVKIGGK-EGMEVRLCLVGKGEKGLED-GFMGSSLPKKIQVSFMD 1032
>gi|224090507|ref|XP_002309005.1| predicted protein [Populus trichocarpa]
gi|222854981|gb|EEE92528.1| predicted protein [Populus trichocarpa]
Length = 896
Score = 998 bits (2580), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/884 (60%), Positives = 661/884 (74%), Gaps = 86/884 (9%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAH-HFINPNTFWQNH 59
MREAGFSST++KN+IEDSSASSVFQCY++SGG VFSSPCSPS++E INP TFWQ H
Sbjct: 62 MREAGFSSTSVKNNIEDSSASSVFQCYSTSGG-VFSSPCSPSATETQKEVINPTTFWQTH 120
Query: 60 ----------ALFSSQKPASVS--------KEDIKLVFEVFLRKKRRNTVIVGDCLSITD 101
L S QK S + KEDIKLV EV LRK N VIVGDC+ +T+
Sbjct: 121 FLNYTSEKNPVLLSPQKKVSSNYFTDSGSVKEDIKLVLEVLLRK---NVVIVGDCVPVTE 177
Query: 102 ALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVG 161
L+ + MGR+ERG+VP ELKQT +I+F FAPV+LRFMKKE+V+MNL+ELKRKVDSL
Sbjct: 178 GLIAELMGRLERGEVPMELKQTRIIEFQFAPVSLRFMKKEDVKMNLSELKRKVDSLGE-- 235
Query: 162 GGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWL 221
GAIIYTGDLKW V++ N GE+ S Y+P++HLV+E+G+L+S+ S+S+T+VWL
Sbjct: 236 SGAIIYTGDLKWAVEETVGN------GEV-SGYSPVDHLVTEIGRLLSEY-SSSNTKVWL 287
Query: 222 MATASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWE 281
MATASYQTYMKCQMR+P +EIQWALQAVS+PSGGLGLSLH+SS+ S NPS V E
Sbjct: 288 MATASYQTYMKCQMRRPSIEIQWALQAVSVPSGGLGLSLHASSI-------SNNPSHVLE 340
Query: 282 TKPFA--IKEEEDHKLNCCAECTSNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQKDELV 339
TKPF KEE+D K CC ECTSNYE+E QL KSGQ+K L PWLQP + N+NQKDELV
Sbjct: 341 TKPFINNGKEEQD-KFTCCQECTSNYEKEVQLLKSGQQKHLLPWLQPQGT-NSNQKDELV 398
Query: 340 EMRRKWNRSCHSLH-QGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNS 398
E+RRKWNR CHSLH QGR QS +S L+NNQS+ GK+ S+AS+YPWWPSQ+S F DSNS
Sbjct: 399 ELRRKWNRLCHSLHHQGR--QSNLNSTLFNNQSMLGKNYSFASSYPWWPSQNSFFPDSNS 456
Query: 399 ISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGKEVKI 458
ISFA+SA+KP+ SS++V KFRRQQSC IEFNF N +K + EP LDSLK++EGKEVKI
Sbjct: 457 ISFADSALKPNYSSSNVPKFRRQQSCH-IEFNFVNGFQKNEPEEPNLDSLKNSEGKEVKI 515
Query: 459 TLALGNSELSDSAKLQ--RSD-LYKVLQENVPWQFDSIHSIVEVLVECKSAKKATWFLLQ 515
TLALGNS SD KL+ RSD L K+L+ENVPWQ + I SIV+ +VE +S +K TW L+Q
Sbjct: 516 TLALGNSLFSDIGKLEKGRSDHLCKLLKENVPWQSEIIPSIVDAMVESRSTEKDTWLLIQ 575
Query: 516 GNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVED 575
GNDT+GKRRLAL+I+ESV GS DLL H++MRKR++ V+S+SEML TL+N EKL V VED
Sbjct: 576 GNDTLGKRRLALAISESVLGSADLLLHLNMRKRDNEVTSYSEMLARTLRNQEKLAVFVED 635
Query: 576 IDLADPQFIKILADGFETENFG-----------KVIFVLTKGDSSNYEERIENQDSVINM 624
+DLAD QF+K LADGFETE FG +VIF+LT+GDS+ YE+R + DSVI M
Sbjct: 636 VDLADIQFLKFLADGFETERFGESSNKREGNGSQVIFILTRGDSTVYEDR-KMDDSVIQM 694
Query: 625 TLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKK-DFSRQSSFN 683
TLK+ + K+ SPR+DEKE+A +N GNKK DFSRQSSFN
Sbjct: 695 TLKI-----------------SGKSNSPRVDEKENAYWFPDEN---GNKKKDFSRQSSFN 734
Query: 684 TLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSND 743
TLDLN+KAD EDDE E KPGE SPISSDLTRE ++ G LD+I+NRFVF+RN + D
Sbjct: 735 TLDLNLKAD-EDDESEGKPGEFSPISSDLTRETSSDQLSPKGLLDMIKNRFVFDRNQAQD 793
Query: 744 GKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSLFEKWLKEVFQTS 803
++ G+ +K+K + +E+F QN V FS+EERVL EVL GSG F NS FEKWLK++FQTS
Sbjct: 794 IEMKGVLSSKIKRNVNEVFGDQNGVYFSIEERVLGEVLEGSGSFVNSQFEKWLKDIFQTS 853
Query: 804 LEAVKIGGKGGGIEIRLCFGCKNDKVFANYGFGDSCLPKKIQIA 847
L+ VK+GGK GI +RLCFG +D+VF + GF +CLPKKIQ++
Sbjct: 854 LKTVKLGGKEEGIGVRLCFGFTSDRVFED-GFMGTCLPKKIQVS 896
>gi|359485128|ref|XP_002263442.2| PREDICTED: uncharacterized protein LOC100247938 [Vitis vinifera]
Length = 1045
Score = 995 bits (2573), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/911 (58%), Positives = 667/911 (73%), Gaps = 76/911 (8%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHH-FINPNTFWQNH 59
MREAGFSST +KN++EDSSASSVFQCY+SSGG VFSSPCSPS +E H INP+TFWQ H
Sbjct: 150 MREAGFSSTAVKNNLEDSSASSVFQCYSSSGG-VFSSPCSPSPTETHRDIINPSTFWQTH 208
Query: 60 AL----------FSSQKPASVS--------KEDIKLVFEVFLRKKRRNTVIVGDCLSITD 101
L FS QK S + KED+KLV EV LRKKRRNTVIVGD +S T+
Sbjct: 209 ILAYSSEQNPLLFSPQKKLSSNPITDSTSVKEDLKLVLEVLLRKKRRNTVIVGDSVSTTE 268
Query: 102 ALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVG 161
LV + MGR+ERG+VP+ELK H +KF F+PVTLRFMK+EEVEMNL++LKRKVDSL S G
Sbjct: 269 GLVAELMGRIERGEVPEELKSAHFVKFQFSPVTLRFMKREEVEMNLSDLKRKVDSLASGG 328
Query: 162 GGAIIYTG-DLKWTVDQQESNNNNNF-NGEIASCYNPINHLVSEVGKLVSDCNSASSTRV 219
GG I DLKWTV+ S+ + F NGE AS YNPI+HLV+E+G+L+SD + S+TRV
Sbjct: 329 GGGAIIYAGDLKWTVEAAVSDRDGGFPNGE-ASAYNPIDHLVAEIGRLLSD-YTTSNTRV 386
Query: 220 WLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSS-------------VH 266
WLMATASYQTYM+CQM+QP LEIQWALQAVS+PSGGLGLSLH+SS VH
Sbjct: 387 WLMATASYQTYMRCQMKQPSLEIQWALQAVSVPSGGLGLSLHASSLINKAEDHCEKVSVH 446
Query: 267 ESRLTFSQNPSQ-VWETKPFAIKEEEDHKLNCCAECTSNYEEEAQLFKSGQKKLLPPWLQ 325
+SR SQN + V ETKPFA KEE D KL+CCAECT+NYE+E LFKSGQ+KLLP WLQ
Sbjct: 447 DSR---SQNQAHHVLETKPFAAKEEHD-KLSCCAECTANYEKEVGLFKSGQQKLLPSWLQ 502
Query: 326 PHSSSNANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPW 385
H A QKD+LVE+RRKWNR CHSLHQGR Q+ SS++++NQ+L GKS SY S+YPW
Sbjct: 503 AHGV-EARQKDDLVELRRKWNRLCHSLHQGRSNQNHLSSSMFSNQNLLGKSYSYTSSYPW 561
Query: 386 WPSQSSIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRL 445
WP+Q+SIF D NSISF SA+KP+++S+ V +FRRQQSC IEF+FGN K Q VEP L
Sbjct: 562 WPNQNSIFPDLNSISFTNSALKPNHASSLVPRFRRQQSCH-IEFSFGNGMHKQQSVEPSL 620
Query: 446 DSLKSNEGKEVKITLALGNSELSDSAKL---------QRSDLYKVLQENVPWQFDSIHSI 496
D LK EGK+VKITLALG S SDS KL + D+ K+L+ENVPWQ ++I I
Sbjct: 621 DCLKKTEGKDVKITLALGTSVYSDSGKLPELKGEKTIRLRDICKLLEENVPWQSEAISPI 680
Query: 497 VEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS 556
E L++ KS+KK TW LLQGND+IGKRRLA +IAESVFGS DL+F ++MRK ++GV+ S
Sbjct: 681 AEALIDSKSSKKETWLLLQGNDSIGKRRLAHAIAESVFGSADLVFRMNMRKLDNGVTPCS 740
Query: 557 EMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFET----------ENFGKVIFVLTKG 606
E+L L+ ++KLVV+VED+D A+PQF+K LADG ET +FG+ IF+LT G
Sbjct: 741 EILTEALRAHQKLVVMVEDVDFAEPQFMKFLADGCETGEFRDSSKREGSFGQAIFILTTG 800
Query: 607 DSSNYEERIENQDSVINMTLKVNER-----NQNFDHKRKAEWEFANKTKSPRIDEKEDAT 661
DSS+Y+ER N+ SVI+M L++N N DHKRKAEW+ +N+TKSPR DE+E +
Sbjct: 801 DSSSYQERKGNKSSVIHMKLQINLTIPTLGTPNMDHKRKAEWDLSNRTKSPRTDEEEGSC 860
Query: 662 SVTIDNVSSGNKK--DFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITN 719
++++ GN K +F+RQ SFNTLDLN++A DEDDE + KP ELSPISSDLTRE T+
Sbjct: 861 LISVE---PGNSKILEFTRQLSFNTLDLNIRA-DEDDESKDKPRELSPISSDLTRETATD 916
Query: 720 PALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEE 779
+GFL+ I+NRF F R + D ++ FL+K+K SF+ + +N V+FSVE+++LEE
Sbjct: 917 IQNPHGFLESIENRFTFKRKADQDREMREAFLSKIKGSFEVGYDSENTVSFSVEQKLLEE 976
Query: 780 VLIGSGFFHNSLFEKWLKEVFQTSLEAVKIGGKGGGIEIRLCFGCKNDKVFANYGFGDSC 839
VL G F NSLFEKWLKEVFQTS++ VKIGGK G+E+RL K +K + GF S
Sbjct: 977 VLAGCDSFLNSLFEKWLKEVFQTSVKTVKIGGK-EGMEVRLRLVGKGEKGLED-GFMGSS 1034
Query: 840 LPKKIQIALLD 850
LPKKIQ++ +D
Sbjct: 1035 LPKKIQVSFMD 1045
>gi|224144311|ref|XP_002325256.1| predicted protein [Populus trichocarpa]
gi|222866690|gb|EEF03821.1| predicted protein [Populus trichocarpa]
Length = 899
Score = 993 bits (2568), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 535/884 (60%), Positives = 655/884 (74%), Gaps = 81/884 (9%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHH-FINPNTFWQNH 59
MREAGFSST +KN+IEDSSASSVFQCY++SGG VFSSPCSPS++E INP TFWQ+H
Sbjct: 60 MREAGFSSTAVKNNIEDSSASSVFQCYSTSGG-VFSSPCSPSATETQREVINPTTFWQSH 118
Query: 60 ----------ALFSSQKPASVS--------KEDIKLVFEVFLRKKRRNTVIVGDCLSITD 101
ALFS+QK S + KEDIKLV EV LRK +N VIVGDC+S+T+
Sbjct: 119 FLTYSSEQNPALFSAQKKVSSNYFTDSGSVKEDIKLVLEVLLRKNGKNVVIVGDCVSVTE 178
Query: 102 ALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVG 161
L+ + MGR+ERG+VP +LKQT IKF FAP++L+FMKK++VEMNL+ELKRKVDSL
Sbjct: 179 GLIGELMGRLERGEVPMQLKQTQFIKFQFAPISLKFMKKQDVEMNLSELKRKVDSLGE-- 236
Query: 162 GGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWL 221
GAIIYTGDLKWTV++ NGE+ S Y+P++HLV E+G+L+S+ S+S+ +VWL
Sbjct: 237 SGAIIYTGDLKWTVEE------TFVNGEV-SVYSPVDHLVREIGRLLSEY-SSSNRKVWL 288
Query: 222 MATASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWE 281
MATASYQTYMKCQMRQP LE QWALQAVS+PSGGLGLSLH S R+ FS NPS V E
Sbjct: 289 MATASYQTYMKCQMRQPSLETQWALQAVSVPSGGLGLSLHPS-----RIKFSHNPSLVLE 343
Query: 282 TKPFA--IKEEEDHKLNCCAECTSNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQKDELV 339
TKPF KEEED + CC EC SNYE+E KSGQ+K LPPWLQP + N+ QKDE V
Sbjct: 344 TKPFINDGKEEED-RFTCCPECNSNYEKEVHSLKSGQQKHLPPWLQPQGT-NSIQKDEFV 401
Query: 340 EMRRKWNRSCHSLH-QGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNS 398
E+RRKWNR CHSLH QGR QS +S LY+NQSL GK+ S+AS+YPWWPSQ+S F DSNS
Sbjct: 402 ELRRKWNRLCHSLHHQGR--QSNLNSTLYSNQSLLGKNFSFASSYPWWPSQNSFFPDSNS 459
Query: 399 ISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGKEVKI 458
ISF +SA+KP+ SS+ V KFRRQQSC +EFNF N T+K + EP LDSLK+ EGKEVKI
Sbjct: 460 ISFGDSALKPNYSSSCVPKFRRQQSCH-VEFNFVNGTQKNEPGEPNLDSLKNTEGKEVKI 518
Query: 459 TLALGNSELSDSAKLQRS---DLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATWFLLQ 515
TLALGNS SD KL++ L K+L+ENVPWQ ++I SIV+ LVE KS +K TW L+Q
Sbjct: 519 TLALGNSLFSDIGKLEKGRSGHLCKLLKENVPWQSETIPSIVDALVESKSNEKDTWLLIQ 578
Query: 516 GNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVED 575
GNDT+GKRRLAL+IAESV GS DLL H++MRKR++ V+S+SEML L+N EKLVV VED
Sbjct: 579 GNDTLGKRRLALAIAESVLGSADLLLHLNMRKRDNEVTSYSEMLARALRNQEKLVVFVED 638
Query: 576 IDLADPQFIKILADGFETENFG-----------KVIFVLTKGDSSNYEERIENQDSVINM 624
+DLA+ +F+K LADGFE+ FG +VIF+LT+GDS YE+R + DSVI M
Sbjct: 639 VDLAETRFLKFLADGFESGKFGESSNRREGNASQVIFILTRGDSIIYEDR-KMDDSVIQM 697
Query: 625 TLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKK-DFSRQSSFN 683
TLK+ + K+KSPR+DEKE+A+ +N GNKK DFSRQSSFN
Sbjct: 698 TLKI-----------------SGKSKSPRVDEKENASWFPDEN---GNKKKDFSRQSSFN 737
Query: 684 TLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSND 743
TLDLN+KAD EDDE E KPGE SPISSDLTRE ++ G LD+I+NRFVF+RN + D
Sbjct: 738 TLDLNLKAD-EDDESEGKPGEFSPISSDLTRETSSDQLSPKGLLDMIKNRFVFDRNQAQD 796
Query: 744 GKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSLFEKWLKEVFQTS 803
++T + +K+K + +E+F QN V FS+EERVL EVL GSG F NS FEKWLK +FQTS
Sbjct: 797 IEMTEVLSSKIKRNVNEVFGDQNGVYFSIEERVLGEVLEGSGSFVNSQFEKWLKGIFQTS 856
Query: 804 LEAVKIGGKGGGIEIRLCFGCKNDKVFANYGFGDSCLPKKIQIA 847
L+ VK+GGK GI +RLCFG +D+VF + GF +CLPKKIQ++
Sbjct: 857 LKTVKLGGKEEGIGVRLCFGFTSDRVFED-GFMGTCLPKKIQVS 899
>gi|255556741|ref|XP_002519404.1| conserved hypothetical protein [Ricinus communis]
gi|223541471|gb|EEF43021.1| conserved hypothetical protein [Ricinus communis]
Length = 1008
Score = 920 bits (2377), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/894 (57%), Positives = 635/894 (71%), Gaps = 79/894 (8%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHH-FINPNTFWQNH 59
MREAGFSST++K++IEDSSASSVFQCYT+SGG VFSSP SP E H INP +FWQ H
Sbjct: 150 MREAGFSSTSVKSNIEDSSASSVFQCYTTSGG-VFSSPSSPG--ETHREIINPTSFWQTH 206
Query: 60 ----------ALFSSQKPASVS---------KEDIKLVFEVFLRKKRRNTVIVGDCLSIT 100
LFS QK S + KEDIKLVFEVFLRKK++NTVIVGD +SIT
Sbjct: 207 FLSYSAEKNPLLFSPQKKLSTNYFTDSSASVKEDIKLVFEVFLRKKKKNTVIVGDRVSIT 266
Query: 101 DALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSV 160
+ LV + MGRVERG+VP ELKQ +KF FAPV+LRFMKKE+VEMN+T+LKRKVDS+
Sbjct: 267 EGLVGELMGRVERGEVPAELKQIQFVKFQFAPVSLRFMKKEDVEMNITQLKRKVDSIGD- 325
Query: 161 GGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVW 220
G IIYTGDLKWTV++ + NGE Y+P++HLV+E G+L+SD S S+ RVW
Sbjct: 326 -SGVIIYTGDLKWTVEE------SAINGE----YSPVDHLVAETGRLLSDY-SCSNARVW 373
Query: 221 LMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQVW 280
LMATA+YQTYM+CQMRQP LEI+WALQAVS+PSGGLGLSLH SS+HESR+TF+QNPSQV
Sbjct: 374 LMATANYQTYMRCQMRQPSLEIEWALQAVSVPSGGLGLSLHGSSIHESRMTFNQNPSQVL 433
Query: 281 ETKPFAI--KEEEDHKLNCCAECTSNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQKDEL 338
ETKP K+E+D KL CC EC S+YE+EAQ+ KS Q+K LPPWL P ++ N +E
Sbjct: 434 ETKPLISNSKDEQD-KLTCCPECISSYEKEAQVLKSVQQKNLPPWLNPRGTT-TNDMNEE 491
Query: 339 VEMRRKWNRSCHSLH-QGRHTQSQFSSNLYNN--QSLTGKSCSYASTYPWWPSQSSIFLD 395
E+RRKWN C LH QGR+TQ+ +S NN Q LTGKS S YP WPSQ++IF D
Sbjct: 492 AELRRKWNGLCQGLHHQGRNTQNNLASTFCNNNNQGLTGKSYSL---YPRWPSQNNIFQD 548
Query: 396 SNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGKE 455
SNSISF +SA+KP +S+ V KFRRQQSC I+F FG+ T+K Q P LDSLK+ +GKE
Sbjct: 549 SNSISFTDSALKPDFTSSFVPKFRRQQSCK-IDFKFGDVTQKQQ---PNLDSLKNTQGKE 604
Query: 456 VKITLALGNSELS---DSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATWF 512
VKITLALGNS S +SAK ++DL ++LQ+NVPWQ + IHSI E L E KS +K TW
Sbjct: 605 VKITLALGNSFFSATGESAK-GKNDLCRLLQDNVPWQSEIIHSIAEALFESKSNRKGTWL 663
Query: 513 LLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVL 572
L+QGND +GKR LAL+IAESV GS D L +I+M++R++ +SEM+ ++ E+LV L
Sbjct: 664 LIQGNDIVGKRILALTIAESVLGSADSLLYINMKRRDNEAVPYSEMITRAFRSQERLVAL 723
Query: 573 VEDIDLADPQFIKILADGF------ETENFGKVIFVLTKG-DSSNYEERIENQDSVINMT 625
VEDID +D +K LADGF E+ N G+ IF+LT+G D YE NQ+SVI MT
Sbjct: 724 VEDIDFSDTHLLKFLADGFESGKFGESGNLGQAIFILTRGSDFMGYEHGKTNQNSVIRMT 783
Query: 626 LKVNER------NQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKD-FSR 678
L+V + N D KRKAE + + + K+PR +EKEDA +N SS KKD FSR
Sbjct: 784 LEVKQTKLDSFGTPNTDRKRKAERDISGRRKAPRSEEKEDA-----ENGSS--KKDCFSR 836
Query: 679 QSSFNTLDLNMKADDEDDE-GEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFN 737
Q+SFNTLDLN+KA++EDDE GE+K E SPISSDLTRE ++P + FLDLI+NRFV N
Sbjct: 837 QTSFNTLDLNIKANEEDDEHGEEKHVEFSPISSDLTREAASDPVAPSRFLDLIKNRFVLN 896
Query: 738 RNSSNDGKITG-LFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSLFEKWL 796
RN KI F KM + +E F QN + FS+EERV EE++ G+ NS+ E+WL
Sbjct: 897 RNDGQGRKIMREEFSTKMNKCVEEAFGDQNSIGFSIEERVSEEIVDKFGYIVNSVIERWL 956
Query: 797 KEVFQTSLEAVKIGGKGGGIEIRLCFGCKNDKVFANYGFGDSCLPKKIQIALLD 850
K++FQT+L +KIGGK G + IRLCF NDKV + GF +CLPKKIQ++ +D
Sbjct: 957 KDIFQTTLHTIKIGGKEGTV-IRLCFEGTNDKVLGD-GFMGTCLPKKIQVSFMD 1008
>gi|297735465|emb|CBI17905.3| unnamed protein product [Vitis vinifera]
Length = 974
Score = 904 bits (2336), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/897 (55%), Positives = 620/897 (69%), Gaps = 119/897 (13%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSST +KN++EDSSASSVFQCY + INP+TFWQ H
Sbjct: 150 MREAGFSSTAVKNNLEDSSASSVFQCY--------------------NIINPSTFWQTHI 189
Query: 61 L----------FSSQKPASVS--------KEDIKLVFEVFLRKKRRNTVIVGDCLSITDA 102
L FS QK S + KED+KLV EV LRKKRRNTVIVGD +S T+
Sbjct: 190 LAYSSEQNPLLFSPQKKLSSNPITDSTSVKEDLKLVLEVLLRKKRRNTVIVGDSVSTTEG 249
Query: 103 LVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGG 162
LV + MGR+ERG+VP+ELK H +KF F+PVTLRFMK+EEVEMNL++LKRKVDSL S GG
Sbjct: 250 LVAELMGRIERGEVPEELKSAHFVKFQFSPVTLRFMKREEVEMNLSDLKRKVDSLASGGG 309
Query: 163 GAIIYTG-DLKWTVDQQESNNNNNF-NGEIASCYNPINHLVSEVGKLVSDCNSASSTRVW 220
G I DLKWTV+ S+ + F NGE AS YNPI+HLV+E+G+L+SD + S+TRVW
Sbjct: 310 GGAIIYAGDLKWTVEAAVSDRDGGFPNGE-ASAYNPIDHLVAEIGRLLSD-YTTSNTRVW 367
Query: 221 LMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQ-V 279
LMATASYQTYM+CQM+QP LEIQWALQAVS+PSGGLGLSLH+SSVH+SR SQN + V
Sbjct: 368 LMATASYQTYMRCQMKQPSLEIQWALQAVSVPSGGLGLSLHASSVHDSR---SQNQAHHV 424
Query: 280 WETKPFAIKEEEDHKLNCCAECTSNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQKDELV 339
ETKPFA KEE D KL+CCAECT+NYE+E LFKSGQ+KLLP WLQ H A QKD+LV
Sbjct: 425 LETKPFAAKEEHD-KLSCCAECTANYEKEVGLFKSGQQKLLPSWLQAHGV-EARQKDDLV 482
Query: 340 EMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSI 399
E+RRKWNR CHSLHQG S SY S+YPWWP+Q+SIF D NSI
Sbjct: 483 ELRRKWNRLCHSLHQG--------------------SYSYTSSYPWWPNQNSIFPDLNSI 522
Query: 400 SFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGKEVKIT 459
SF SA+KP+++S+ V +FRRQQSC IEF+FGN K Q VEP LD LK EGK+VKIT
Sbjct: 523 SFTNSALKPNHASSLVPRFRRQQSCH-IEFSFGNGMHKQQSVEPSLDCLKKTEGKDVKIT 581
Query: 460 LALGNSELSDSAKL---------QRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKAT 510
LALG S SDS KL + D+ K+L+ENVPWQ ++I I E L++ KS+KK T
Sbjct: 582 LALGTSVYSDSGKLPELKGEKTIRLRDICKLLEENVPWQSEAISPIAEALIDSKSSKKET 641
Query: 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLV 570
W LLQGND+IGKRRLA +IAESVFGS DL+F ++MRK ++GV+ SE+L L+ ++KLV
Sbjct: 642 WLLLQGNDSIGKRRLAHAIAESVFGSADLVFRMNMRKLDNGVTPCSEILTEALRAHQKLV 701
Query: 571 VLVEDIDLADPQFIKILADGFET----------ENFGKVIFVLTKGDSSNYEERIENQDS 620
V+VED+D A+PQF+K LADG ET +FG+ IF+LT GDSS+Y+ER N+ S
Sbjct: 702 VMVEDVDFAEPQFMKFLADGCETGEFRDSSKREGSFGQAIFILTTGDSSSYQERKGNKSS 761
Query: 621 VINMTLKVNER-----NQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKK- 674
VI+M L++N N DHKRKA+ + +V GN K
Sbjct: 762 VIHMKLQINLTIPTLGTPNMDHKRKAD---------------------CLISVEPGNSKI 800
Query: 675 -DFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNR 733
+F+RQ SFNTLDLN++A DEDDE + KP ELSPISSDLTRE T+ +GFL+ I+NR
Sbjct: 801 LEFTRQLSFNTLDLNIRA-DEDDESKDKPRELSPISSDLTRETATDIQNPHGFLESIENR 859
Query: 734 FVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSLFE 793
F F R + D ++ FL+K+K SF+ + +N V+FSVE+++LEEVL G F NSLFE
Sbjct: 860 FTFKRKADQDREMREAFLSKIKGSFEVGYDSENTVSFSVEQKLLEEVLAGCDSFLNSLFE 919
Query: 794 KWLKEVFQTSLEAVKIGGKGGGIEIRLCFGCKNDKVFANYGFGDSCLPKKIQIALLD 850
KWLKEVFQTS++ VKIGGK G+E+RL K +K + GF S LPKKIQ++ +D
Sbjct: 920 KWLKEVFQTSVKTVKIGGK-EGMEVRLRLVGKGEKGLED-GFMGSSLPKKIQVSFMD 974
>gi|356532692|ref|XP_003534905.1| PREDICTED: uncharacterized protein LOC100785754 [Glycine max]
Length = 1051
Score = 825 bits (2132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/929 (51%), Positives = 622/929 (66%), Gaps = 121/929 (13%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSST +K++IED+S+S+ Y SSGGGVFSSP SPS SE + N F QNH
Sbjct: 156 MREAGFSSTVVKSNIEDTSSSAPSVFYNSSGGGVFSSPGSPSPSEKN-----NVFRQNHF 210
Query: 61 L-------FSSQKP--------ASV-----------SKEDIKLVFEVFLRKKRRNTVIVG 94
L FSS P ASV SKEDIK+VF+V LRKK+RNTVIVG
Sbjct: 211 LAAYTSNEFSSTSPNSSLLLKKASVFPIIESPPPSSSKEDIKVVFDVLLRKKKRNTVIVG 270
Query: 95 DCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFA-PVTLRFMKKEEVEMNLTELKRK 153
D L++T+ LV + MG++ERG+VP ELK TH IKF A PV+LRFMK++EVEM+L+ LKRK
Sbjct: 271 DSLALTEGLVGELMGKLERGEVPDELKSTHFIKFQLASPVSLRFMKRDEVEMSLSALKRK 330
Query: 154 VDSLT-SVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASC---YNPINHLVSEVGKLVS 209
VDS+ S GGGAI Y GDLKWTV+ S G++ YNP++HLV+E+GKL
Sbjct: 331 VDSVVVSGGGGAIFYVGDLKWTVELGTSEKEEG--GDVCGYNYYYNPVDHLVAEIGKLF- 387
Query: 210 DCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESR 269
C+S ++T+VWL+ATASYQTYM+CQMRQPPLE QW+LQAV +PSGGLGLSLH+SSVH+S+
Sbjct: 388 -CDSNNTTKVWLLATASYQTYMRCQMRQPPLETQWSLQAVPVPSGGLGLSLHASSVHDSK 446
Query: 270 LTFSQNPSQVWETKPFAIKEEEDHKLNCCAECTSNYEEEAQLFKSGQKKLLPPWLQPHSS 329
+T SQNPS + ETK F+ K+EE KLNCC EC S+YE+EAQLFK GQKKLLP WLQ H +
Sbjct: 447 MTISQNPSNMMETKLFSSKKEEQDKLNCCEECASSYEKEAQLFKPGQKKLLPSWLQSH-T 505
Query: 330 SNANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNN--QSLTGKSCSYASTYPWWP 387
+ A+QKDEL +++RKWNR CH LHQ + Q+ +S+ L+ N S K Y S+YPWWP
Sbjct: 506 TEAHQKDELAQLKRKWNRLCHCLHQSKQPQNHWSNTLHGNYHSSNGNKIYHYNSSYPWWP 565
Query: 388 SQ-SSIFLDSNSISFAESAMKPHNSSNS--VAKFRRQQSCSTIEFNFGNCTRKPQGVEPR 444
+Q +S+F DS+SISFA+S KP SSN+ V +FRRQQSC TIEFNF + T+K
Sbjct: 566 NQGTSVFTDSSSISFADSPPKPAYSSNNNIVPRFRRQQSC-TIEFNFSDVTQKKPSTTA- 623
Query: 445 LDSLKSNEG---KEVKITLALGNSELSDSA-------------KLQRSDLYKVLQENVPW 488
LDSLK EG EVKITLALGNS + L+R+ + K+LQENVPW
Sbjct: 624 LDSLKGMEGNNSSEVKITLALGNSTFGGGSGQTVENIITTTDRTLRRAHICKLLQENVPW 683
Query: 489 QFDSIHSIVEVLVECKSAKKA--TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546
Q ++I SI E LV+ KSAK++ TW LLQG D+IGK RLA +IAESVFGS D L H+DM
Sbjct: 684 QSETIPSIAEALVDSKSAKQSSTTWLLLQGTDSIGKTRLARAIAESVFGSVDFLLHLDML 743
Query: 547 KRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENF---------- 596
K N+ +S ++++ G LK++EK+VVL+E +D AD QF K LADGFET F
Sbjct: 744 KNNNKENS-ADIVAGALKSHEKVVVLIESLDFADAQFRKFLADGFETAKFGNLSMNEKSS 802
Query: 597 GKVIFVLTKGDSSNYEERIENQDSVINMTLKVNERN-------QNFDHKRKAE-WEFANK 648
G+ IF+LT GD+ + EE+ N +SV+ + L+++E + KR+AE +
Sbjct: 803 GQAIFILTNGDTRSNEEKKTN-NSVMKLVLQISETKPSLESSSPSLGQKRRAEVLDLFTN 861
Query: 649 TKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKAD-DEDDEGEQKPGELSP 707
KSPR++EKE+ KK FSR SSFN LDLNMKAD +EDD+G SP
Sbjct: 862 VKSPRVEEKEEG------------KKVFSRHSSFNNLDLNMKADEEEDDDGS------SP 903
Query: 708 ISSDLTRENITNPALSNGFLDLIQNRFVFNRN--SSNDGKITGLFLAKMKESFDEIFKRQ 765
ISSDLTRE + + L+LI+NRF FN + ++T +FL+++KESF+E++
Sbjct: 904 ISSDLTRETVVDQ------LELIENRFEFNEGPEREREREVTQMFLSRIKESFEEVYDDD 957
Query: 766 NK----VNFSVEERVLEEVLIGSGFFHNSLFEKWLKEVFQTSLEAVKI----GGKGGGIE 817
N VNF+VEERV+EE+ +G G F NS+FEKWLK++FQ+SL + GGK GI
Sbjct: 958 NGDGVVVNFTVEERVIEEIGVGFGNFTNSMFEKWLKDIFQSSLLQTVVNFGDGGKERGIG 1017
Query: 818 IRLCFGCKNDKVFANYGFGDSCLPKKIQI 846
LC+G K D+ + GF SCLPK +Q+
Sbjct: 1018 FTLCWGGKGDRKSDSDGFMGSCLPKNVQV 1046
>gi|356564815|ref|XP_003550643.1| PREDICTED: chaperone protein ClpB1-like [Glycine max]
Length = 1010
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/915 (50%), Positives = 587/915 (64%), Gaps = 127/915 (13%)
Query: 1 MREAGFSSTTIKNHIEDSSAS--SVFQCYTSSGGGVFSSPCSPSSSEAHHFI------NP 52
MREAGFSST +KNHIEDS++ SVFQCY SSGG VFSSPCSPS+SE ++ NP
Sbjct: 149 MREAGFSSTAVKNHIEDSNSPQYSVFQCYNSSGG-VFSSPCSPSASENNNHRETATNNNP 207
Query: 53 NTF--------------WQNHALFSSQKPASVSK-----------EDIKLVFEVFLRKKR 87
F + +FS K A V +D++LV ++ LRKK+
Sbjct: 208 TNFRHTTRHFLTSYASEFHPSLVFSPPKNAPVCSITGAASSSSKDDDVRLVLDILLRKKK 267
Query: 88 RNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNL 147
+NTVIVGD LS+T+ LV + MGR+ER +VP ELK H IKF + V+L MK++EVEM L
Sbjct: 268 KNTVIVGDSLSLTEGLVGEIMGRLERSEVPDELKSIHFIKFQISHVSLSCMKRDEVEMKL 327
Query: 148 TELKRKVDSLTSVGGGAIIYTGDLKWTVDQQE--SNNNNNFNGEIASCYNPINHLVSEVG 205
EL+RKV+S+ S GGG I Y GDLKWTV++ + NGE+ S YNP++HLVSE+G
Sbjct: 328 LELERKVNSIASGGGGGIFYIGDLKWTVEEASLSEKEEGSPNGEV-SGYNPVDHLVSEIG 386
Query: 206 KLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSV 265
KL DC ++++ +VWLMATASYQTYM+CQMRQPPLE QWALQAV +PSGGLGLSLH+ SV
Sbjct: 387 KLFCDCGTSNNAKVWLMATASYQTYMRCQMRQPPLEKQWALQAVPVPSGGLGLSLHAPSV 446
Query: 266 HESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCAECTSNYEEEAQLFKSGQKKLLPPWLQ 325
+S++T S N SQV ETKPF E+ED KLNCC EC SNYE+EAQ + QKK LP WLQ
Sbjct: 447 LDSKMTISHNQSQVLETKPFGNMEQED-KLNCCEECASNYEKEAQFIRPDQKKRLPFWLQ 505
Query: 326 PHSSSNANQKDELVEMRRKWNRSCHSLHQGRHTQSQ--FSSNLYNNQSLTGKSCSYASTY 383
H + + ++KDELV+++RKWNR CH LHQ + Q+Q ++ N YN+ S
Sbjct: 506 SHITED-HKKDELVQLKRKWNRLCHCLHQSKQPQNQWNWNHNSYNSPS------------ 552
Query: 384 PWWPSQSSIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEP 443
SISFA +A ++S V +FRRQQSC IEFNFG +K + EP
Sbjct: 553 --------------SISFASNATH-GSTSKLVPRFRRQQSC-IIEFNFG---KKREATEP 593
Query: 444 RLDSLKSNEGKEVKITLALGNSELSDSA-------KLQRSDLYKVLQENVPWQFDSIHSI 496
LDSL+S EGKEVK TLALGN +SA LQR+ + K+LQENVPWQ ++ SI
Sbjct: 594 VLDSLESMEGKEVKTTLALGNGGSGESAVGDITDTTLQRAHICKLLQENVPWQSETFPSI 653
Query: 497 VEVLVECKSAKKA---TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVS 553
E L++ KSAK++ TW L+QGNDTIGKRRLAL+IAESVFGST+LL DM KR ++
Sbjct: 654 AEALIDSKSAKESNNITWLLMQGNDTIGKRRLALAIAESVFGSTNLLLQFDMLKRETSIA 713
Query: 554 SHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG--------KVIFVLTK 605
SEML G LK + +LV+L+E++D AD QF K L DGFET NFG +VIF+LT
Sbjct: 714 PFSEMLEGALKTHHQLVMLIENVDFADAQFKKFLCDGFETGNFGNFTEENSSQVIFILTN 773
Query: 606 GDSSNYEERIENQDSVINMTLKVNERNQN--------------FDHKRKAEWEFANKTKS 651
G S + +N+DSV+ + +V+E N F HKR+AE + + T S
Sbjct: 774 GGSGSTNIEQQNEDSVMRLLWQVSETKPNLETPSVTTTIAEPCFGHKRRAELDMFSNTNS 833
Query: 652 PRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSD 711
KK+FSRQ+SFNTLDLNMKAD+ D K GE SPISSD
Sbjct: 834 ----------------FQGSKKKEFSRQTSFNTLDLNMKADEGD-----KAGESSPISSD 872
Query: 712 LTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFS 771
T E I +P NGFLD I NRF FN N D ++ LFL K KESF+E++ ++ N S
Sbjct: 873 QTGETIADPLNQNGFLDSIVNRFEFNTNPVKDREMAELFLCKFKESFEEVYGKKCLENLS 932
Query: 772 VEERVLEEVLIGSGFFHNSLFEKWLKEVFQTSLEAVKIGGKGGGIEIRLCFGCKNDKVFA 831
V+ERV+E+V +G G+F NSLFEKWLK+VFQ+SLE V GGK GI RL +G K D+ +
Sbjct: 933 VDERVIEDVGVGCGYFTNSLFEKWLKDVFQSSLETVNFGGK-EGILFRLSWGGKGDRK-S 990
Query: 832 NYGFGDSCLPKKIQI 846
+ GF S LPK IQ+
Sbjct: 991 DSGFMSSSLPKSIQV 1005
>gi|356550720|ref|XP_003543732.1| PREDICTED: uncharacterized protein LOC100814376 [Glycine max]
Length = 1008
Score = 785 bits (2028), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/902 (50%), Positives = 581/902 (64%), Gaps = 105/902 (11%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHF----INPNTFW 56
MREAGFSST +KN+IEDSS SVFQCY SSGG VFSSPCSPS+SE ++ NP F
Sbjct: 151 MREAGFSSTAVKNNIEDSSPHSVFQCYNSSGG-VFSSPCSPSASENNNHRETATNPTNFR 209
Query: 57 QNH--------------ALFSSQK----------PASVSKEDIKLVFEVFLRKKRRNTVI 92
H LFS K AS SK+D++LV ++ LRKK++NTVI
Sbjct: 210 HPHHYLTSYASSEFHPSLLFSPPKNNSPVCSITGAASSSKDDVRLVLDILLRKKKKNTVI 269
Query: 93 VGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKR 152
VGD LS+T+ LV + MGR+ER +VP ELK TH IKF + +L MK++EVEM L ELKR
Sbjct: 270 VGDSLSLTEGLVAELMGRLERSEVPDELKSTHFIKFQISHDSLSCMKRDEVEMKLLELKR 329
Query: 153 KVDSLTSVGGGA-IIYTGDLKWTVDQQE--SNNNNNFNGEIASCYNPINHLVSEVGKLVS 209
KV+S+ S GGG I Y GDLKWTV + + NGE+ S YNP++HLVSE+GKL S
Sbjct: 330 KVESIASGGGGGGIFYIGDLKWTVKEASFSEKEEGSPNGEV-SGYNPVDHLVSEIGKLFS 388
Query: 210 DCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESR 269
DC ++++ +VWLMATASYQTYM+CQMRQPPLE QWALQAV IPSGGLGLSLH+ SV S+
Sbjct: 389 DCGTSNNAKVWLMATASYQTYMRCQMRQPPLEKQWALQAVPIPSGGLGLSLHAPSVLHSK 448
Query: 270 LTFSQNPSQVWETKPFAIKEEEDHKLNCCAECTSNYEEEAQLFKSGQKKLLPPWLQPHSS 329
+ S N S V ET PF E+E+ KLNCC EC SNYE+EAQ + QKK+LP WLQ HS+
Sbjct: 449 MIVSHNQSHVPETNPFGNMEQEN-KLNCCEECASNYEKEAQFLRPDQKKMLPLWLQSHST 507
Query: 330 SNANQKDELVEMRRKWNRSCHSLHQGRHTQSQFS--SNLYNNQSLTGKSCSYASTYPWWP 387
++ +KDELV+++RKWNR CH LHQ + Q+Q+S N YN+ S
Sbjct: 508 EDS-KKDELVQLKRKWNRLCHCLHQSKQPQNQWSWNHNSYNSPS---------------- 550
Query: 388 SQSSIFLDSNSISFAESAMKPHNSSNS-VAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLD 446
SISFA +A H S++ V +F+RQQ C IEFNFGN K + EP LD
Sbjct: 551 ----------SISFANNAT--HGSTSKLVPRFQRQQLC-IIEFNFGN---KREATEPVLD 594
Query: 447 SLKSNEGKEVKITLALGN--------SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVE 498
SL+S +GK+VK LALGN +++D+ LQ++ + K+LQENVPWQ +++ SI E
Sbjct: 595 SLESMDGKKVKTILALGNGGSGESTVGDITDTT-LQQAHICKLLQENVPWQSETVPSIAE 653
Query: 499 VLVECKSAKK---ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSH 555
L++ KSAK+ TW L+QGNDTIGKRRLAL+IAESVFGSTD+L H DM KR ++
Sbjct: 654 ALIDSKSAKQNNNITWLLVQGNDTIGKRRLALAIAESVFGSTDVLLHFDMLKRETSIAPF 713
Query: 556 SEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG--------KVIFVLTKGD 607
SEML G LK + +LV+L+E++D AD QF K L+DGFE FG +VIF+LT G
Sbjct: 714 SEMLEGALKTHHQLVILIENVDFADAQFKKFLSDGFEKGKFGNFTEENSSQVIFILTNGG 773
Query: 608 SSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDN 667
+ +N + V+ + +V+E N + A + P + K A N
Sbjct: 774 CGSTSNEEQNDNLVMRLLWQVSETKPNSETP-----SVATRIAEPCLGHKRRAELDLFSN 828
Query: 668 VSSGN---KKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSN 724
+S KK FSRQ+SFNTLDLNMKAD+ED K GE SPISSDLT E I +P N
Sbjct: 829 TNSSQGSKKKQFSRQTSFNTLDLNMKADEED-----KAGESSPISSDLTGETIADPLNQN 883
Query: 725 GFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGS 784
GFLD NRF FN N D ++ LFL K K SF+E+ +Q N SV+ERV+E+V +G
Sbjct: 884 GFLDSNVNRFEFNTNPVKDREMAELFLCKFKGSFEEVCGKQCWENLSVDERVIEDVSVGC 943
Query: 785 GFFHNSLFEKWLKEVFQTSLEAVKIGGKGGGIEIRLCFGCKNDKVFANYGFGDSCLPKKI 844
G+F NSLFEKWLK+VFQ+SLE V GGK GI +RL + K D+ ++ GF S LPK I
Sbjct: 944 GYFTNSLFEKWLKDVFQSSLETVNFGGK-EGILLRLSWEGKGDRK-SDSGFMSSSLPKSI 1001
Query: 845 QI 846
Q+
Sbjct: 1002 QV 1003
>gi|357449635|ref|XP_003595094.1| hypothetical protein MTR_2g038200 [Medicago truncatula]
gi|124359320|gb|ABD28470.2| ATP binding , related [Medicago truncatula]
gi|355484142|gb|AES65345.1| hypothetical protein MTR_2g038200 [Medicago truncatula]
Length = 1020
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/913 (47%), Positives = 579/913 (63%), Gaps = 110/913 (12%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSS ++KN++E+SS +SS SP S +HF++ ++
Sbjct: 155 MREAGFSSPSVKNNLENSST----LINSSSVFHSSPSPLS-----HNHFLS--SYGYGSV 203
Query: 61 LFSSQKPASV-----------SKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMG 109
LFSSQK V +KEDI LVF+V LRKK++NTVIVGD +S+T+ LV + M
Sbjct: 204 LFSSQKKEQVVYHPFLKSSESNKEDINLVFDVLLRKKKKNTVIVGDTVSLTEGLVSEIMK 263
Query: 110 RVERGDVPQELKQTHVIKFH-FAPVTLRFMKKEEVEMNLTE-LKRKVDSLTSVGGGAIIY 167
R ERG+VP E+K TH +KFH + V+L++MKKEEVEMN+ LKRKV ++G GAI Y
Sbjct: 264 RFERGEVPDEMKTTHFVKFHGLSSVSLKYMKKEEVEMNVIRVLKRKVSDYVALGVGAIFY 323
Query: 168 TGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASY 227
GDLKW VD +N+ + N + ++++V E+GKL + + ++WL+ATASY
Sbjct: 324 VGDLKWIVD----DNDGSLNEK-----EVVDYVVEEIGKLFGE-EGNKNGKIWLVATASY 373
Query: 228 QTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSS-----------SVHESRLTFSQNP 276
Q+YM+CQMR P E QW LQAV +PSGGLGLSLHSS SVH+S+++ SQNP
Sbjct: 374 QSYMRCQMRVPTFENQWCLQAVPVPSGGLGLSLHSSRRHCEKHCWLVSVHDSKMSISQNP 433
Query: 277 SQVWETKPFAIKEEEDHKLNCCAECTSNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQKD 336
S + E+K F+ KEE + KLNCC EC SNYE+EAQLFK QK LLP WLQ HS+ A QKD
Sbjct: 434 SPMLESKFFSNKEEHE-KLNCCEECVSNYEKEAQLFKPDQKNLLPSWLQSHSTE-ARQKD 491
Query: 337 ELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQ-SSIFLD 395
EL ++ +KWNR C LHQ + Q+ +S NN S K Y S+YP+WP+Q SSI D
Sbjct: 492 ELTQLNKKWNRLCQCLHQNKQPQNHWS----NNHSSNAKIYPYNSSYPYWPNQGSSILPD 547
Query: 396 -SNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEP--RLDSLKSNE 452
S+SISFA+SA KP SSN + +FRR Q TIEFNF + + V LDSLK E
Sbjct: 548 TSSSISFADSATKPAYSSNLIPRFRRGQQSCTIEFNFNDEKAQKNQVTATLELDSLKGME 607
Query: 453 G-KEVKITLALGNSELSDSAK-------LQRSDLYKVLQENVPWQFDSIHSIVEVLVECK 504
G KEVK TLALGNS S S + LQR +YKVLQEN+PW +++ SI E LV+ K
Sbjct: 608 GTKEVKTTLALGNSTFSVSDQKRMENLTLQRDHIYKVLQENIPWHCETVSSIAEALVDSK 667
Query: 505 SAKK-ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTL 563
S+K+ ATW LQGND++GK+RLAL+IAESVFGS ++ H+DM KR + + SE ++G L
Sbjct: 668 SSKECATWLFLQGNDSVGKKRLALAIAESVFGSVEMFSHVDMMKRENSETPFSEKVVGPL 727
Query: 564 KNYEKLVVLVEDIDLADPQFIKILADGFETENFGKV---IFVLTKGDSSNYEERIENQDS 620
KN EK VVLVE+ D D K+LAD FE FG + IF+L+ G S E+ + +DS
Sbjct: 728 KNNEKFVVLVENADFGDTLIRKMLADEFEIAKFGTLGQKIFILSNGGSMVSED--QKKDS 785
Query: 621 VINMTLKVNERNQN-----------------FDHKRKAEWEFANKTKSPRIDEKEDATSV 663
V+ + LK++E + +KR AE + +K K PRI+E E
Sbjct: 786 VMKLVLKISETEKKPTFELSPSSSSSSKSPCLGNKRSAELDLFSKIKIPRIEENE----- 840
Query: 664 TIDNVSSGNKK---DFSRQSSF-NTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITN 719
GNKK FSRQSSF NTLDLNMKAD+ED+E + SPISSDLTRE +
Sbjct: 841 -------GNKKREFSFSRQSSFNNTLDLNMKADEEDNEDYDEGEN-SPISSDLTRETLGE 892
Query: 720 PALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEE 779
+SN LD I+N F FN++ + + ++T +F++++KESF+E+ V FSV+++V+EE
Sbjct: 893 HLISNESLDSIENLFEFNQSPAKNKEMTQMFMSRVKESFEEVL---GNVKFSVQDKVIEE 949
Query: 780 VLIGSGFFHNSLFEKWLKEVFQTSLEAVKIGGKGGGIEIRLCFGCKNDKVFANYGFGDSC 839
+ +G G F N++FEKWLK +FQTSLE V GG GI LC+G K D+ + + GF SC
Sbjct: 950 IGVGCGSFTNNMFEKWLKGIFQTSLERVN-GGDKNGIVYTLCWGGKEDRKW-DSGFMGSC 1007
Query: 840 LPKKIQIA--LLD 850
LPK IQI L+D
Sbjct: 1008 LPKNIQIVNYLMD 1020
>gi|449503003|ref|XP_004161803.1| PREDICTED: uncharacterized protein LOC101225921 [Cucumis sativus]
Length = 1020
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/913 (44%), Positives = 541/913 (59%), Gaps = 112/913 (12%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHH------FINPNT 54
MREAGFSST +K+++EDSS SSVF CY SSGG +FSSP SPS ++ H NP
Sbjct: 157 MREAGFSSTLVKSNLEDSSVSSVFHCYGSSGG-IFSSPSSPSRTDHHSDQRDNLIFNPGD 215
Query: 55 FWQNHAL----------FSSQK----------PASVSKEDIKLVFEVFLRKKRRNTVIVG 94
FWQ L FS QK AS K DIKLVFE L +KR+NTVI+G
Sbjct: 216 FWQTQFLTRSSEQNPLPFSPQKRVPNTNVIAESASSLKLDIKLVFEAMLGRKRKNTVIIG 275
Query: 95 DCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKV 154
D +++ + L+ + MGRV RG+VP ELK T I+F +P +L MK+E++EM + EL+R +
Sbjct: 276 DSITMIEGLISELMGRVARGEVPNELKSTKFIEFLLSPDSLSSMKREDIEMKVAELRRNI 335
Query: 155 DSLTSVGGGAIIYTGDLKWTV--DQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCN 212
DS+TS G GAIIYTGDLKW V D +E + + + AS Y+ I+H++ E+ +L+S +
Sbjct: 336 DSITSRGWGAIIYTGDLKWMVETDVREREETSFSSSKEASSYSQIDHMIEEISRLIS-FH 394
Query: 213 SASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPS-GGLGLSLHSSSVHESRLT 271
S S T++WL+ TASYQTYM+CQMR P LE +W LQAV +PS G LGLSLHS S+H SR T
Sbjct: 395 SISCTKLWLVGTASYQTYMRCQMRHPTLETRWDLQAVPVPSDGSLGLSLHSFSLHGSRTT 454
Query: 272 -FSQNPSQVWETKPFAIKEEEDHKLNCCAECTSNYEEEAQLFKSGQKKLLPPWLQPHSSS 330
NPSQVWETKPF I +E KL+CC +C+SN+++E KS Q+K LP WLQP S+
Sbjct: 455 ALGHNPSQVWETKPFGIGKEGQEKLSCC-DCSSNHDKEVHPLKSSQQKELPSWLQPFST- 512
Query: 331 NANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQS 390
Q H +SQ S + +N+S +G + + P + +++
Sbjct: 513 -----------------------QLSHLKSQEKSTMQSNESSSGSNFLNTWSNP-FSTKN 548
Query: 391 SIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKS 450
++F DSN+I F E ++K SSN + KFRRQQSC T EFNF K Q P LD+LK+
Sbjct: 549 TMFQDSNTICFTEPSLKMSRSSNQMLKFRRQQSCIT-EFNFD----KYQDATPSLDNLKN 603
Query: 451 NE--GKEVKITLALGNSELSD--------SAKLQRSDLYKVLQENVPWQFDSIHSIVEVL 500
E KEV I+L+LG+S D A +QR L K L ENVPWQ D+I SI + L
Sbjct: 604 MEEDNKEVDISLSLGDSLFKDPKDLTKKSEATIQRDHLCKSLAENVPWQSDTIPSIAKAL 663
Query: 501 VECKSAKKAT-WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEML 559
+ KS + W L++GND IGKRRLA +IAES+FGS + L I+ R N+ + S+++
Sbjct: 664 MSFKSKNEELFWILIEGNDKIGKRRLARAIAESIFGSVEQLCKINARGNNEE-NPPSKIV 722
Query: 560 MGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTKGDSS 609
+K EKLVVLVEDID DPQF+K LADGF++ FG + IF+LT G
Sbjct: 723 ENAMKTQEKLVVLVEDIDQGDPQFMKFLADGFQSGKFGGMDEKDRDTRQFIFILTSGGEG 782
Query: 610 NYEERIENQDSVINMTLKVNERNQNF-----DHKRKAEWEFANKTKSPRI--DEKEDA-- 660
+E DS+I MT+ + N F D KR+AEWE TK R +E+EDA
Sbjct: 783 GDKE----TDSIIPMTMNI-AINTGFGALSLDQKRRAEWESPINTKHQRTIKEEEEDANP 837
Query: 661 TSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNP 720
+ TID V SRQSSFN LDLN+KA +ED+E ++K + D +T+P
Sbjct: 838 NTNTIDAVKINGSGSLSRQSSFNKLDLNLKA-EEDEEAQEK-------TEDDNIHLVTDP 889
Query: 721 ALSNG---FLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVL 777
F LI NRFVFN + + F +K+ SF+ +F + + NFSVEERVL
Sbjct: 890 ESPPKKLQFQQLIHNRFVFNETPLSKREQREWFKSKIVRSFEGVFGLKKQANFSVEERVL 949
Query: 778 EEVLIGSGFFHNSLFEKWLKEVFQTSLEAVKIGGKGGGIEIRLCFGCKNDKVFANYGFGD 837
E + S F N +F KWL E+F+TSL V GG+ G ++RLC K D N GF
Sbjct: 950 ESISSRSDCFGNGVFNKWLTEIFETSLRGVGFGGQEGA-DVRLCLSGKEDGAIEN-GFKG 1007
Query: 838 SCLPKKIQIALLD 850
+ LP+ I+++ +D
Sbjct: 1008 TALPQIIRLSFMD 1020
>gi|449457275|ref|XP_004146374.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101213124
[Cucumis sativus]
Length = 1009
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/913 (44%), Positives = 541/913 (59%), Gaps = 112/913 (12%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHH------FINPNT 54
MREAGFSST +K+++EDSS SSVF CY SSGG +FSSP SPS ++ H NP
Sbjct: 146 MREAGFSSTLVKSNLEDSSVSSVFHCYGSSGG-IFSSPSSPSRTDHHSDQRDNLIFNPGD 204
Query: 55 FWQNHAL----------FSSQK----------PASVSKEDIKLVFEVFLRKKRRNTVIVG 94
FWQ L FS QK AS K DIKLVFE L +KR+NTVI+G
Sbjct: 205 FWQTQFLTRSSEQNPLPFSPQKRVPNTNVIAESASSLKLDIKLVFEAMLGRKRKNTVIIG 264
Query: 95 DCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKV 154
D +++ + L+ + MGRV RG+VP ELK T I+F +P +L MK+E++EM + EL+R +
Sbjct: 265 DSITMIEGLISELMGRVARGEVPNELKSTKFIEFLLSPDSLSSMKREDIEMKVAELRRNI 324
Query: 155 DSLTSVGGGAIIYTGDLKWTV--DQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCN 212
DS+TS G GAIIYTGDLKW V D +E + + + AS Y+ I+H++ E+ +L+S +
Sbjct: 325 DSITSRGWGAIIYTGDLKWMVETDVREREETSFSSSKEASSYSQIDHMIEEISRLIS-FH 383
Query: 213 SASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPS-GGLGLSLHSSSVHESRLT 271
S S T++WL+ TASYQTYM+CQMR P LE +W LQAV +PS G LGLSLHS S+H SR T
Sbjct: 384 SISCTKLWLVGTASYQTYMRCQMRHPTLETRWDLQAVPVPSDGSLGLSLHSFSLHGSRTT 443
Query: 272 -FSQNPSQVWETKPFAIKEEEDHKLNCCAECTSNYEEEAQLFKSGQKKLLPPWLQPHSSS 330
NPSQVWETKPF I +E KL+CC +C+SN+++E KS Q+K LP WLQP S+
Sbjct: 444 ALGHNPSQVWETKPFGIGKEGQEKLSCC-DCSSNHDKEVHPLKSSQQKELPSWLQPFST- 501
Query: 331 NANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQS 390
Q H +SQ S + +N+S +G + + P + +++
Sbjct: 502 -----------------------QLSHLKSQEKSTMQSNESSSGSNFLNTWSNP-FSTKN 537
Query: 391 SIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKS 450
++F DSN+I F E ++K SSN + KFRRQQSC T EFNF K Q P LD+LK+
Sbjct: 538 TMFQDSNTICFTEPSLKMSRSSNQMLKFRRQQSCIT-EFNFD----KYQDATPSLDNLKN 592
Query: 451 NE--GKEVKITLALGNSELSD--------SAKLQRSDLYKVLQENVPWQFDSIHSIVEVL 500
E KEV I+L+LG+S D A +QR L K L ENVPWQ D+I SI + L
Sbjct: 593 MEEDNKEVDISLSLGDSLFKDPKDLTKKSEATIQRDHLCKSLAENVPWQSDTIPSIAKAL 652
Query: 501 VECKSAKKAT-WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEML 559
+ KS + W L++GND IGKRRLA +IAES+FGS + L I+ R N+ + S+++
Sbjct: 653 MSFKSKNEELFWILIEGNDKIGKRRLARAIAESIFGSVEQLCKINARGNNEE-NPPSKIV 711
Query: 560 MGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTKGDSS 609
+K EKLVVLVEDID DPQF+K LADGF++ FG + IF+LT G
Sbjct: 712 ENAMKTQEKLVVLVEDIDQGDPQFMKFLADGFQSGKFGGMDEKDRDTRQFIFILTSGGEG 771
Query: 610 NYEERIENQDSVINMTLKVNERNQNF-----DHKRKAEWEFANKTKSPRI--DEKEDA-- 660
+E DS+I MT+ + N F D KR+AEWE TK R +E+EDA
Sbjct: 772 GDKE----TDSIIPMTMNI-AINTGFGALSLDQKRRAEWESPINTKHQRTIKEEEEDANP 826
Query: 661 TSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNP 720
+ TID V SRQSSFN LDLN+KA +ED+E ++K + D +T+P
Sbjct: 827 NTNTIDAVKINGSGSLSRQSSFNKLDLNLKA-EEDEEAQEK-------TEDDNIHLVTDP 878
Query: 721 ALSNG---FLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVL 777
F LI NRFVFN + + F +K+ SF+ +F + + NFSVEERVL
Sbjct: 879 ESPPKKLQFQQLIHNRFVFNETPLSKREQREWFKSKIVRSFEGVFGLKKQANFSVEERVL 938
Query: 778 EEVLIGSGFFHNSLFEKWLKEVFQTSLEAVKIGGKGGGIEIRLCFGCKNDKVFANYGFGD 837
E + S F N +F KWL E+F+TSL V GG+ G ++RLC K D N GF
Sbjct: 939 ESISSRSDCFGNGVFNKWLTEIFETSLRGVGFGGQEGA-DVRLCLSGKEDGAIEN-GFKG 996
Query: 838 SCLPKKIQIALLD 850
+ LP+ I+++ +D
Sbjct: 997 TALPQIIRLSFMD 1009
>gi|79538220|ref|NP_568849.2| Clp amino terminal domain-containing protein [Arabidopsis thaliana]
gi|8843815|dbj|BAA97363.1| unnamed protein product [Arabidopsis thaliana]
gi|332009468|gb|AED96851.1| Clp amino terminal domain-containing protein [Arabidopsis thaliana]
Length = 1028
Score = 586 bits (1511), Expect = e-164, Method: Compositional matrix adjust.
Identities = 388/889 (43%), Positives = 530/889 (59%), Gaps = 133/889 (14%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHH------------ 48
MREAGF+ST +K+ +ED S SSVF Y S GVFSSP SP + HH
Sbjct: 177 MREAGFNSTAVKSCVEDCSVSSVF--YGGSAVGVFSSPNSPDQQQQHHNSINRLHHYQNP 234
Query: 49 ----FINPN-TFWQNHALFSS--QKPASVSKE-------------DIKLVFEVFLRKK-- 86
FINPN WQ H L S Q P +S D+KLV +V +RKK
Sbjct: 235 KDFNFINPNFPLWQTHFLNQSPDQNPLLLSSSASHHHQQQRLREIDLKLVVDVLMRKKTK 294
Query: 87 RRNTVIVGDCLSITDALVFDFMGRVERGDVPQ--ELKQTHVIKFHFAPVTLRFMKKEEVE 144
++N VIVGD +S T+ V + M ++ERG++ Q ELKQTH +KFHF+P+ +FM++E+VE
Sbjct: 295 KKNPVIVGDSISFTEGFVSELMAKLERGEIDQTGELKQTHFVKFHFSPMASKFMRREDVE 354
Query: 145 MNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEV 204
+N+ EL++KV SLT+ G AII+TGDLKWTV + +NN+ N EI+S Y+P++HLV E+
Sbjct: 355 LNIKELRKKVLSLTTSGKNAIIFTGDLKWTVKEITNNNSGGIN-EISSSYSPLDHLVEEI 413
Query: 205 GKLVSDCN------SASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGG-LG 257
GKL+++CN + +VW+M TAS+QTYM+CQMRQP LE WAL VS+PS LG
Sbjct: 414 GKLITECNDDGDDDDCKTRKVWVMGTASFQTYMRCQMRQPSLETLWALHPVSVPSSANLG 473
Query: 258 LSLHSSSVHESRLTFSQNPSQVWETKPFA----IKEEE--DHKLNCCAECTSNYEEEAQL 311
LSLH++S HE+R N S V TK + +EEE H L+CC EC ++++ EA+
Sbjct: 474 LSLHATSGHEAR-----NMSTVNATKSLSGYDKAEEEETISHVLSCCPECVTSFDREAKS 528
Query: 312 FKSGQKKLLPPWLQPHSSSNANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQS 371
K+ Q KLLP WLQ H + +++QKDEL+ ++RKWNR C +LH NQ
Sbjct: 529 LKANQDKLLPSWLQSHDADSSSQKDELMGLKRKWNRFCETLH---------------NQ- 572
Query: 372 LTGKSCSYASTYPWWPSQSSIFLDSNSISFAES-AMKP-HNSSNSVAKFRRQQSCSTIEF 429
TG+ S YP+ S S S S +S +KP ++NS+AKFRRQ SC TIEF
Sbjct: 573 -TGQ-LSMMGNYPYGLPYGSSHESSKSTSLIDSLGLKPNQRATNSIAKFRRQNSC-TIEF 629
Query: 430 NF-GNCTRKPQGVEPRLDSLKSNEGKEVKITLALGNSEL-SDSA---KLQRSDLYKVLQE 484
+ GN K + + D K NE +TL LG S SDS +L+ S L K L+E
Sbjct: 630 DLGGNEHEKGESINEAEDD-KGNE----TVTLDLGRSLFRSDSVTDTRLKLSALVKALEE 684
Query: 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID 544
++P Q ++ I E L++C S KK +W +++G DT KRR+A +++ESVFGS + L HID
Sbjct: 685 SIPRQTVTMRLIAESLMDCVSKKKDSWIIIEGRDTTAKRRVARTVSESVFGSFESLVHID 744
Query: 545 MRKR-NDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETE-------NF 596
++K+ N+ +S + +L LKN EK+V L+EDIDLAD +F+K+LAD FE + +
Sbjct: 745 LKKKGNESKASPATLLAYELKNPEKVVFLIEDIDLADSRFLKLLADRFEDKRRIKTGIDH 804
Query: 597 GKVIFVLTKGDSSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDE 656
+ IF+LTK DS N + N+DSV+ + L++ Q+ KRK E
Sbjct: 805 RQAIFILTKEDSRN----VRNRDSVLQIGLEITA--QSPGKKRKPE-------------- 844
Query: 657 KEDATSVTIDNVSSGNKKDFSRQSSFNT--LDLNMKADDEDDEGEQKPGELSPISSDLTR 714
+ ++I+N K+ SRQSSFN+ LDLN+KA+DE+ E GE+SPISSDLT
Sbjct: 845 ----SDLSIENGFWMKKEVCSRQSSFNSSYLDLNIKAEDEEVE-----GEISPISSDLTG 895
Query: 715 ENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEE 774
E T + S+ FL+ IQNRFV NR S G G+ A +E F E + V FSVE+
Sbjct: 896 EEETEFSSSSNFLNRIQNRFVLNR-SCEPGIEKGMITAAFREIFPE-REEGGGVRFSVED 953
Query: 775 RVLEEVLIGSGFFHNSLFEKWLKEVFQTSLEAVKIGGKGGGIEIRLCFG 823
+++EE L G N FE+WLKEVFQT L VK GGK IR+ FG
Sbjct: 954 KLVEE-LYG---IQNGAFERWLKEVFQTGLLTVKKGGKKDTGVIRMVFG 998
>gi|16604653|gb|AAL24119.1| unknown protein [Arabidopsis thaliana]
gi|28393849|gb|AAO42332.1| unknown protein [Arabidopsis thaliana]
Length = 920
Score = 586 bits (1510), Expect = e-164, Method: Compositional matrix adjust.
Identities = 388/889 (43%), Positives = 530/889 (59%), Gaps = 133/889 (14%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHH------------ 48
MREAGF+ST +K+ +ED S SSVF Y S GVFSSP SP + HH
Sbjct: 69 MREAGFNSTAVKSCVEDCSVSSVF--YGGSAVGVFSSPNSPDQQQQHHNSINRLHHYQNP 126
Query: 49 ----FINPN-TFWQNHALFSS--QKPASVSKE-------------DIKLVFEVFLRKK-- 86
FINPN WQ H L S Q P +S D+KLV +V +RKK
Sbjct: 127 KDFNFINPNFPLWQTHFLNQSPDQNPLLLSSSASHHHQQQRLREIDLKLVVDVLMRKKTK 186
Query: 87 RRNTVIVGDCLSITDALVFDFMGRVERGDVPQ--ELKQTHVIKFHFAPVTLRFMKKEEVE 144
++N VIVGD +S T+ V + M ++ERG++ Q ELKQTH +KFHF+P+ +FM++E+VE
Sbjct: 187 KKNPVIVGDSISFTEGFVSELMAKLERGEIDQTGELKQTHFVKFHFSPMASKFMRREDVE 246
Query: 145 MNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEV 204
+N+ EL++KV SLT+ G AII+TGDLKWTV + +NN+ N EI+S Y+P++HLV E+
Sbjct: 247 LNIKELRKKVLSLTTSGKNAIIFTGDLKWTVKEITNNNSGGIN-EISSSYSPLDHLVEEI 305
Query: 205 GKLVSDCN------SASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGG-LG 257
GKL+++CN + +VW+M TAS+QTYM+CQMRQP LE WAL VS+PS LG
Sbjct: 306 GKLITECNDDGDDDDCKTRKVWVMGTASFQTYMRCQMRQPSLETLWALHPVSVPSSANLG 365
Query: 258 LSLHSSSVHESRLTFSQNPSQVWETKPFA----IKEEE--DHKLNCCAECTSNYEEEAQL 311
LSLH++S HE+R N S V TK + +EEE H L+CC EC ++++ EA+
Sbjct: 366 LSLHATSGHEAR-----NMSTVNATKSLSGYDKAEEEETISHVLSCCPECVTSFDREAKS 420
Query: 312 FKSGQKKLLPPWLQPHSSSNANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQS 371
K+ Q KLLP WLQ H + +++QKDEL+ ++RKWNR C +LH NQ
Sbjct: 421 LKANQDKLLPSWLQSHDADSSSQKDELMGLKRKWNRFCETLH---------------NQ- 464
Query: 372 LTGKSCSYASTYPWWPSQSSIFLDSNSISFAES-AMKP-HNSSNSVAKFRRQQSCSTIEF 429
TG+ S YP+ S S S S +S +KP ++NS+AKFRRQ SC TIEF
Sbjct: 465 -TGQ-LSMMGNYPYGLPYGSSHESSKSTSLIDSLGLKPNQRATNSIAKFRRQNSC-TIEF 521
Query: 430 NF-GNCTRKPQGVEPRLDSLKSNEGKEVKITLALGNSEL-SDSA---KLQRSDLYKVLQE 484
+ GN K + + D K NE +TL LG S SDS +L+ S L K L+E
Sbjct: 522 DLGGNEHEKGESINEAEDD-KGNE----TVTLDLGRSLFRSDSVTDTRLKLSALVKALEE 576
Query: 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID 544
++P Q ++ I E L++C S KK +W +++G DT KRR+A +++ESVFGS + L HID
Sbjct: 577 SIPRQTVTMRLIAESLMDCVSKKKDSWIIIEGRDTTAKRRVARTVSESVFGSFESLVHID 636
Query: 545 MRKR-NDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETE-------NF 596
++K+ N+ +S + +L LKN EK+V L+EDIDLAD +F+K+LAD FE + +
Sbjct: 637 LKKKGNESKASPATLLAYELKNPEKVVFLIEDIDLADSRFLKLLADRFEDKRRIKTGIDH 696
Query: 597 GKVIFVLTKGDSSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDE 656
+ IF+LTK DS N + N+DSV+ + L++ Q+ KRK E
Sbjct: 697 RQAIFILTKEDSRN----VRNRDSVLQIGLEITA--QSPGKKRKPE-------------- 736
Query: 657 KEDATSVTIDNVSSGNKKDFSRQSSFNT--LDLNMKADDEDDEGEQKPGELSPISSDLTR 714
+ ++I+N K+ SRQSSFN+ LDLN+KA+DE+ E GE+SPISSDLT
Sbjct: 737 ----SDLSIENGFWMKKEVCSRQSSFNSSYLDLNIKAEDEEVE-----GEISPISSDLTG 787
Query: 715 ENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEE 774
E T + S+ FL+ IQNRFV NR S G G+ A +E F E + V FSVE+
Sbjct: 788 EEETEFSSSSNFLNRIQNRFVLNR-SCEPGIEKGMITAAFREIFPE-REEGGGVRFSVED 845
Query: 775 RVLEEVLIGSGFFHNSLFEKWLKEVFQTSLEAVKIGGKGGGIEIRLCFG 823
+++EE L G N FE+WLKEVFQT L VK GGK IR+ FG
Sbjct: 846 KLVEE-LYG---IQNGAFERWLKEVFQTGLLTVKKGGKKDTGVIRMVFG 890
>gi|193870826|gb|ACF23000.1| heat shock-like protein [Arabidopsis thaliana]
Length = 1017
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 388/931 (41%), Positives = 526/931 (56%), Gaps = 154/931 (16%)
Query: 1 MREAGFSSTTIKNHIEDSSA--SSVFQCYT-----------------SSGGGVFSSPCSP 41
MREAG SS ++K++IED S+ S VF + + GGG S +P
Sbjct: 160 MREAGLSSVSVKSNIEDDSSVVSPVFYGSSSSVGVFSSPCSPSSSENNQGGGTLSP--NP 217
Query: 42 SSSEAHHFINPNTFWQNHALFSSQKPASVS-------KEDIKLVFEVFLRKK---RRNTV 91
S H N ++F QN F K + + +ED V EV L KK +RNTV
Sbjct: 218 SKIWHAHLTNHHSFEQN-PFFHFPKGKTFTPDQAFPVREDANPVIEVLLGKKNNKKRNTV 276
Query: 92 IVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELK 151
IVGD +S+T+ +V MGR+ERG+VP +LKQTH IKF F+ V L FMKKE++E + ELK
Sbjct: 277 IVGDSVSLTEGVVAKLMGRIERGEVPDDLKQTHFIKFQFSQVGLNFMKKEDIEGQVRELK 336
Query: 152 RKVDSLTSVGG-GAIIYTGDLKWTVDQQESNNNNNFNG---EIASCYNPINHLVSEVGKL 207
RK+DS TS GG G I+ GDL W V + G +S Y+ +HLV E+G+L
Sbjct: 337 RKIDSFTSWGGKGVIVCLGDLDWAV----------WGGGNSASSSNYSAADHLVEEIGRL 386
Query: 208 VSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHE 267
V D S + +VWL+ TASYQTYM+CQM+QPPL++ WALQAVSIPSGGL L+LH+SS
Sbjct: 387 VYDY-SNTGAKVWLLGTASYQTYMRCQMKQPPLDVHWALQAVSIPSGGLSLTLHASS--- 442
Query: 268 SRLTFSQNPSQVWETKPFAIKEE--------EDHKLNCCAECTSNYEEEAQLFKSGQKKL 319
S+ SQV E KPF +K+E E+ KLN C EC NYE+EA+ F S Q K+
Sbjct: 443 -----SEMASQVMEMKPFRVKKEKKGAREEKEEDKLNFCGECAFNYEKEAKAFISAQHKI 497
Query: 320 LPPWLQPHS-SSNANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCS 378
LPPWLQPH ++N NQKDEL +R+KWNR C +LH +
Sbjct: 498 LPPWLQPHGDNNNINQKDELSGLRKKWNRFCQALHHKK---------------------- 535
Query: 379 YASTYPWWPSQSSIFLDSNSISFAESAMKPHN-SSNSVAKFRRQQSCSTIEFNFGNCTRK 437
S W QSS L S +S++K ++ +S+SVAKFRRQ SC TIEF+FG + +
Sbjct: 536 -PSMTAWRAEQSSSVLPG---SLMDSSLKQNSRASSSVAKFRRQNSC-TIEFSFG--SNR 588
Query: 438 PQGV----EPRLDSLKSN--EGKEVKITLALGNSELSDSAK----------LQRSDLYKV 481
+G+ E LD KSN EG + KITLALG+S ++ ++ S L +
Sbjct: 589 QEGLKKTDELSLDGFKSNNDEGVKTKITLALGHSPFPSDSENSEEEEPEKAIKMSKLLEK 648
Query: 482 LQENVPWQFDSIHSIVEVLVEC--KSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDL 539
L EN+PWQ D + SIVE + E +S +K W L+ GND KRRLA+++ S+FGS +
Sbjct: 649 LHENIPWQKDVLPSIVEAMEESVKRSKRKDAWMLVSGNDVTAKRRLAITLTTSLFGSHEN 708
Query: 540 LFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENF--- 596
+ I++ R S E L LK E++V+L+E +DLAD QF+ IL D FE +
Sbjct: 709 MLKINL--RTSKASEACEELKNALKKKEEVVILIERVDLADAQFMNILVDRFEAGDLDGF 766
Query: 597 ----GKVIFVLTKGDSSNYEERIENQDSVINMTLKVNERNQNF-DHKRKAEWEFAN---K 648
++IF+LT+ D +E +EN+ VI M L N+ ++KRK E++ A K
Sbjct: 767 QGKKSQIIFLLTRED----DECVENEHFVIPMVLNCNKSGSGLVNNKRKPEYDAAPTMIK 822
Query: 649 TKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSF--NTLDLNMKA-DDEDDEGEQKPGEL 705
K+PRI+E +D ++V D S KK+FSRQ F N LDLN++ DED+E E KP
Sbjct: 823 KKNPRIEEDDDESNVACD--ISNIKKEFSRQLKFESNALDLNLRVDADEDEEEEAKPA-- 878
Query: 706 SPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIF-KR 764
+ ISS FLD IQNRF F S D IT F+ K+K+S +EI +R
Sbjct: 879 TEISS----------GFEERFLDSIQNRFDFTVLSDED--ITKFFVTKIKDSCEEILGQR 926
Query: 765 QNKVNFSVEERVLEEVLIGSGFFHNSLFEKWLKEVFQTSLEAVKIGGKGGGIEIRLCFG- 823
+ + F+V+ ++E+ G GFF N LFE+W+KEVFQ L VK GGK G I LC G
Sbjct: 927 EERFGFTVDAELIEKFYKGCGFFANGLFEEWVKEVFQRGLVTVKNGGKEGISVINLCLGG 986
Query: 824 ---CKNDKVF-ANYGFGDSCLPKKIQIALLD 850
+V+ GF +CLP +I ++ +D
Sbjct: 987 IDMIDQGEVYEEEEGFMGTCLPNRIHVSFVD 1017
>gi|15233760|ref|NP_194721.1| heat shock protein-relatedlike protein [Arabidopsis thaliana]
gi|4914416|emb|CAB43667.1| putative protein [Arabidopsis thaliana]
gi|7269891|emb|CAB79750.1| putative protein [Arabidopsis thaliana]
gi|332660293|gb|AEE85693.1| heat shock protein-relatedlike protein [Arabidopsis thaliana]
Length = 1017
Score = 553 bits (1426), Expect = e-154, Method: Compositional matrix adjust.
Identities = 389/931 (41%), Positives = 526/931 (56%), Gaps = 154/931 (16%)
Query: 1 MREAGFSSTTIKNHIEDSSA--SSVFQCYT-----------------SSGGGVFSSPCSP 41
MREAG SS ++K++IED S+ S VF + + GGG S +P
Sbjct: 160 MREAGLSSVSVKSNIEDDSSVVSPVFYGSSSSVGVFSSPCSPSSSENNQGGGTLSP--NP 217
Query: 42 SSSEAHHFINPNTFWQNHALFSSQKPASVS-------KEDIKLVFEVFLRKK---RRNTV 91
S H N ++F QN F K + + +ED V EV L KK +RNTV
Sbjct: 218 SKIWHAHLTNHHSFEQN-PFFHFPKGKTFTPDQAFPVREDANPVIEVLLGKKNNKKRNTV 276
Query: 92 IVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELK 151
IVGD +S+T+ +V MGR+ERG+VP +LKQTH IKF F+ V L FMKKE++E + ELK
Sbjct: 277 IVGDSVSLTEGVVAKLMGRIERGEVPDDLKQTHFIKFQFSQVGLNFMKKEDIEGQVRELK 336
Query: 152 RKVDSLTSVGG-GAIIYTGDLKWTVDQQESNNNNNFNG---EIASCYNPINHLVSEVGKL 207
RK+DS TS GG G I+ GDL W V + G +S Y+ +HLV E+G+L
Sbjct: 337 RKIDSFTSWGGKGVIVCLGDLDWAV----------WGGGNSASSSNYSAADHLVEEIGRL 386
Query: 208 VSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHE 267
V D S + +VWL+ TASYQTYM+CQM+QPPL++ WALQAVSIPSGGL L+LH+SS
Sbjct: 387 VYDY-SNTGAKVWLLGTASYQTYMRCQMKQPPLDVHWALQAVSIPSGGLSLTLHASS--- 442
Query: 268 SRLTFSQNPSQVWETKPFAIKEEEDH--------KLNCCAECTSNYEEEAQLFKSGQKKL 319
S+ SQV E KPF +KEEE+ KLN C EC NYE+EA+ F S Q K+
Sbjct: 443 -----SEMASQVMEMKPFRVKEEEEGAREEEEEDKLNFCGECAFNYEKEAKAFISAQHKI 497
Query: 320 LPPWLQPHS-SSNANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCS 378
LPPWLQPH ++N NQKDEL +R+KWNR C +LH +
Sbjct: 498 LPPWLQPHGDNNNINQKDELSGLRKKWNRFCQALHHKK---------------------- 535
Query: 379 YASTYPWWPSQSSIFLDSNSISFAESAMKPHN-SSNSVAKFRRQQSCSTIEFNFGNCTRK 437
S W QSS L S +S++K ++ +S+SVAKFRRQ SC TIEF+FG + +
Sbjct: 536 -PSMTAWRAEQSSSVLPG---SLMDSSLKQNSRASSSVAKFRRQNSC-TIEFSFG--SNR 588
Query: 438 PQGV----EPRLDSLKSN--EGKEVKITLALGNSELSDSAK----------LQRSDLYKV 481
+G+ E LD KSN EG + KITLALG+S ++ ++ S L +
Sbjct: 589 QEGLKKTDELSLDGFKSNNDEGVKTKITLALGHSPFPSDSENSEEEEPEKAIKMSKLLEK 648
Query: 482 LQENVPWQFDSIHSIVEVLVEC--KSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDL 539
L EN+PWQ D + SIVE + E +S +K W L+ GND KRRLA+++ S+FGS +
Sbjct: 649 LHENIPWQKDVLPSIVEAMEESVKRSKRKDAWMLVSGNDVTAKRRLAITLTTSLFGSHEN 708
Query: 540 LFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENF--- 596
+ I++ R S E L LK E++V+L+E +DLAD QF+ IL D FE +
Sbjct: 709 MLKINL--RTSKASEACEELKNALKKKEEVVILIERVDLADAQFMNILVDRFEAGDLDGF 766
Query: 597 ----GKVIFVLTKGDSSNYEERIENQDSVINMTLKVNERNQNF-DHKRKAEWEFAN---K 648
++IF+LT+ D +E +EN+ VI M L N+ ++KRK E++ A K
Sbjct: 767 QGKKSQIIFLLTRED----DECVENEHFVIPMVLNCNKSGSGLVNNKRKPEYDAAPTMIK 822
Query: 649 TKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSF--NTLDLNMKA-DDEDDEGEQKPGEL 705
K+PRI+E +D ++V D S KK+FSRQ F N LDLN++ DED+E E KP
Sbjct: 823 KKNPRIEEDDDESNVACD--ISNIKKEFSRQLKFESNALDLNLRVDADEDEEEEAKPA-- 878
Query: 706 SPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIF-KR 764
+ ISS FLD IQNRF F S D IT F+ K+K+S +EI +R
Sbjct: 879 TEISS----------GFEERFLDSIQNRFDFTVLSDED--ITKFFVTKIKDSCEEILGQR 926
Query: 765 QNKVNFSVEERVLEEVLIGSGFFHNSLFEKWLKEVFQTSLEAVKIGGKGGGIEIRLCFG- 823
+ + F+V+ ++E+ G GFF N LFE+W+KEVFQ L VK GGK G I LC G
Sbjct: 927 EERFGFTVDAELIEKFYKGCGFFANGLFEEWVKEVFQRGLVTVKNGGKEGISVINLCLGG 986
Query: 824 ---CKNDKVF-ANYGFGDSCLPKKIQIALLD 850
+V+ GF +CLP +I ++ +D
Sbjct: 987 IDMIDQGEVYEEEEGFMGTCLPNRIHVSFVD 1017
>gi|341605679|gb|AEK84225.1| heat shock protein-related protein [Cucurbita maxima]
Length = 782
Score = 493 bits (1270), Expect = e-136, Method: Compositional matrix adjust.
Identities = 297/674 (44%), Positives = 399/674 (59%), Gaps = 77/674 (11%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSST +K +IE+ + ++ +F SP SP SS H F +
Sbjct: 159 MREAGFSSTAVKTNIEE------YNDNNNNNNTIFISPPSPISS--HFFSAQTNSYTPFF 210
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKK----RRNTVIVGDCLSITDALVFDFMGRVERGDV 116
SS P + + KLVFE FL K R N V+VGD + +T+ +VF+ M +V+ G+V
Sbjct: 211 FSSSSPPPPPTTDATKLVFEAFLGKNNNNLRTNVVVVGDSVGLTEGVVFEVMRKVKMGEV 270
Query: 117 PQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVD 176
P+ +K ++F L MK + L E + + GG ++Y GDLKW V+
Sbjct: 271 PEAMKGVKFVEF------LPLMKGSS-SLKLGEYVKD-----NGDGGVLVYVGDLKWIVE 318
Query: 177 QQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMR 236
S+ GEI G ++ N+ S ++W+M ASYQ YM+CQMR
Sbjct: 319 GGNSDEIERLVGEIERLLK---------GDFLNANNNGSKAKIWVMGMASYQIYMRCQMR 369
Query: 237 QPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLN 296
QP LE QW+L AV +PS GLGL+LH+SSV++SR +F SQ ETK F KEE + KL
Sbjct: 370 QPALETQWSLHAVPVPSSGLGLTLHTSSVYDSRPSFF---SQTMETKQFIAKEEHE-KLT 425
Query: 297 CCAECTSNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQKDELVEMRRKWNRSCHSLHQGR 356
CCAECTSN+E E Q KS Q K +P WLQ ++ + ++ KDE VE+R+KWNR C SL R
Sbjct: 426 CCAECTSNFENEVQHLKSFQSKQVPSWLQQYNVNQSHSKDEFVELRKKWNRFCSSLSLHR 485
Query: 357 HTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSISFAESAM-KPHNSSNSV 415
+ QSL GKS SY S+YPWWP +SNSISF ++ KP SSN V
Sbjct: 486 DXSA---------QSLMGKSFSYCSSYPWWPKID----ESNSISFTDNQTPKPLQSSNFV 532
Query: 416 AKFRRQQSCSTIEFNFGNCTRKP---QGVEPRLDSLKSNEGKEVKITLALGNSELSDSA- 471
FRRQQSC+TIEF+FGN T K + P L+SLK GKEVKITLALGN DS+
Sbjct: 533 PPFRRQQSCTTIEFDFGNATTKQSQDRESSPSLNSLKHMVGKEVKITLALGNPLFYDSSA 592
Query: 472 ---------KLQRSDLYKVLQENVPWQFDSIHSIVEVLVEC-KSAKKATWFLLQGNDTIG 521
K +R ++ KVLQENVPW +S+ SI E ++ K+ K+ W L++GND IG
Sbjct: 593 ESMEMESERKTERGEILKVLQENVPWLSESLPSIAETVISAKKNEKRIQWILMEGNDFIG 652
Query: 522 KRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADP 581
KR++AL+IAESVFGS + +++ + G+ S SEM+ LK+ KLV+LVED+++AD
Sbjct: 653 KRKMALAIAESVFGSIEFFLNLNSKSEEMGI-SRSEMVEKALKSTRKLVILVEDVEMADS 711
Query: 582 QFIKILADGFETENFG--------KVIFVLTKGDSSNYEERIENQDSVINMTLKVNERNQ 633
QF+K L DGFE+ FG K+IFVLTK DSS+ ++ ++ SVI M L+++ R +
Sbjct: 712 QFMKFLEDGFESGKFGEVKEERIEKLIFVLTKDDSSDKKKNRDSSSSVIEMALEIDAREK 771
Query: 634 NFDHKRKAEWEFAN 647
HKRKAEWEF N
Sbjct: 772 ---HKRKAEWEFEN 782
>gi|357479513|ref|XP_003610042.1| Heat shock protein-related-like protein [Medicago truncatula]
gi|355511097|gb|AES92239.1| Heat shock protein-related-like protein [Medicago truncatula]
Length = 820
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 294/620 (47%), Positives = 394/620 (63%), Gaps = 77/620 (12%)
Query: 253 SGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCAECTSNYEEEAQLF 312
SGGLGL+LHSSSV +S+++ SQN S + ETKPF+ + + KLNCC EC SNYE+EAQ
Sbjct: 247 SGGLGLTLHSSSVLDSKMSISQNLSHMLETKPFSSNKVHEDKLNCCEECASNYEKEAQFL 306
Query: 313 K-SGQKKLLPPWLQPHSSSNANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQS 371
+ +GQKK LP WLQ H + N KD L E++RKWNR CH LHQ + Q+ ++ + N+ S
Sbjct: 307 RPAGQKKTLPFWLQSHGTEEQN-KDALTELKRKWNRLCHCLHQNKQHQNHWNRSNNNHSS 365
Query: 372 LTGKSCSYASTYPWWPSQSSIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNF 431
S S S ++SN +FRRQQSCSTIEFNF
Sbjct: 366 NLNNSSSIIS----------------------------HTSNLTPRFRRQQSCSTIEFNF 397
Query: 432 GNCTRKPQGVEPRLDSLKSNEGKEVKITLALGNSE-------LSDSAKLQRSDLYKVLQE 484
+ K + +P DS+ S EGKEVKI+LALGN + ++D+A LQ++ + K+LQE
Sbjct: 398 ND---KRETTKPVFDSIASMEGKEVKISLALGNDDSSEKVGNITDTA-LQQAHVCKLLQE 453
Query: 485 NVPWQFDSIHSIVEVLVECKSAK----KATWFLLQGNDTIGKRRLALSIAESVFGSTDLL 540
NVPWQ ++I SI + L + KS K W LQGND I KRRLAL IAESVFGS DL+
Sbjct: 454 NVPWQSETIPSISKALFDTKSTKLNEISFRWLFLQGNDFISKRRLALGIAESVFGSADLV 513
Query: 541 FHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETE------ 594
+DM K+ ++ SEML+G L+ +++LVVL+E++D AD QF+K L+DG+E
Sbjct: 514 LQLDMLKKETLIAPFSEMLLGALRKHQQLVVLIENVDSADTQFMKFLSDGYEKGKFETLS 573
Query: 595 ----NFGKVIFVLTKGDSSNYEERIENQDSVINMTLKVNERNQNF-DHKRKAEWEFANKT 649
N G+VIF+LTKG S + EE+ NQ +VIN+ +++E NF KRKAE++ +K
Sbjct: 574 NKEGNLGQVIFILTKGGSKSIEEK--NQKTVINLLWQISETKPNFLSPKRKAEFDLFSKI 631
Query: 650 KSPRIDEKEDATSVTIDNVSSGNKKD-FSRQSSFN--TLDLNMKADDEDDEGEQKPGELS 706
K+PRI+E E ++ G+KK+ F RQSSFN TLDLNMKAD+E+D GE K E S
Sbjct: 632 KNPRIEENEKGLLIS----EQGSKKEEFLRQSSFNSNTLDLNMKADEEED-GENKAIESS 686
Query: 707 PISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQN 766
ISSD NP SN FLD I+N+F FN +S D + T FL K+K SF+++ ++N
Sbjct: 687 SISSD-------NPLNSNVFLDSIENKFEFNTSSDKDREKTEFFLFKIKGSFEDVCGKKN 739
Query: 767 KVNFSVEERVLEEVLIGSGFFHNSLFEKWLKEVFQTSLEAVKIGGKGGGIEIRLCFGCKN 826
VNFSV+E+V+E++ +G FF N +FEKWLK++FQ+SLE V +GGK GI RLC G
Sbjct: 740 VVNFSVDEKVIEDMCMGCCFFTNKMFEKWLKDIFQSSLETVNLGGK-EGIHFRLCLG--- 795
Query: 827 DKVFANYGFGDSCLPKKIQI 846
D + GF DS LPK IQ+
Sbjct: 796 DNRNWDSGFMDSSLPKSIQV 815
Score = 80.1 bits (196), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/75 (57%), Positives = 57/75 (76%), Gaps = 3/75 (4%)
Query: 1 MREAGFSSTTIKNHIEDS--SASSVFQCYTSSGGGVFSSPCSPSSSEAHH-FINPNTFWQ 57
MREAGFSST +KN++EDS ++SVF+CY SSGGGVFSSPCSPS+SE H IN ++F Q
Sbjct: 155 MREAGFSSTLVKNNLEDSFSPSNSVFKCYNSSGGGVFSSPCSPSTSENHRENINLSSFRQ 214
Query: 58 NHALFSSQKPASVSK 72
N+ + ++ S S+
Sbjct: 215 NNFMAATSAKHSSSE 229
>gi|449463567|ref|XP_004149505.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101222907 [Cucumis sativus]
Length = 774
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 277/692 (40%), Positives = 385/692 (55%), Gaps = 117/692 (16%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSST +KN+IE+ S++ + ++ P F+
Sbjct: 155 MREAGFSSTAVKNNIEEYSSNIITTSTATTQTTT----------------TPLFFFPGSG 198
Query: 61 LFSSQKPASVSKEDIKLVFEVFL-RKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQE 119
S + AS K VFEVFL +KR+N V+VGD ++ +V + M + + G+VP+E
Sbjct: 199 SSSGSENAS------KFVFEVFLGMRKRKNVVLVGDS---SEGVVLEVMRKFKMGEVPEE 249
Query: 120 LKQTHVIKFHFAPVTLRFMKKEEV-EMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQ 178
+K ++F V V E +L+ D + GG ++Y GDLKW V++
Sbjct: 250 MKGVKFVEF----VPYNNNNNSNVSEFLRRKLEENYDHTENNEGGVVVYVGDLKWIVER- 304
Query: 179 ESNNNNNFNGEIASCYN-PINHLVSEVGKLV---------SDCNSASSTRVWLMATASYQ 228
SC N ++ LV E+ +L+ ++ N ++W+ ASYQ
Sbjct: 305 ------------GSCSNFGVDGLVGEIERLLLEGFHYNDRNNLNIKKKIKIWVXGVASYQ 352
Query: 229 TYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIK 288
YM+CQMR P LE QW L A+ +PS GL L+LHSSSV++SRL+F SQ ETKPF I
Sbjct: 353 IYMRCQMRLPSLETQWDLHALPLPSSGLALALHSSSVYDSRLSFF---SQSMETKPFIIG 409
Query: 289 EEEDHKLNCCAECTSNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQKDELVEMRRKWNRS 348
+EE L CC ECTSN++ E KS K LP WLQ + K+ELVE++RKWN+
Sbjct: 410 KEEHQNLTCCEECTSNFQNELLHLKSFHSKQLPSWLQ------SPPKEELVELKRKWNKL 463
Query: 349 CHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSISFAESAMKP 408
C++LH+ QSL GKS SY+S+YPWWP + F D + KP
Sbjct: 464 CNTLHRDNSV-----------QSLIGKSFSYSSSYPWWPKSNISFTDHHH----HQTSKP 508
Query: 409 HNSSNSVAKFRRQQSCSTIEFNFGNC-TRKPQGVEPRLDSLKSNEGKEVKITLALGNSEL 467
+SN V +FRRQQSC+TIEF+FGN T++ Q E L+SLK+ +GKEVKITLALGNS
Sbjct: 509 LQTSNFVPRFRRQQSCTTIEFDFGNAKTKQEQSGELSLNSLKNMDGKEVKITLALGNSLF 568
Query: 468 SDSA----------KLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKAT-WFLLQG 516
SDS+ K +R ++ KVL+ENVPW+ + I I E ++ K K W L++G
Sbjct: 569 SDSSAESMEMESERKSERGEILKVLEENVPWRSELIPCIAEAVISMKKDDKLIQWVLMEG 628
Query: 517 NDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDI 576
ND IGKR++ + IAE +FGS D L ++ + G+S EML LK ++LVVLVED+
Sbjct: 629 NDFIGKRKMGIVIAELLFGSVDFLLDLNAKSEEMGISK-CEMLEKALKLNKELVVLVEDV 687
Query: 577 DLADPQFIKILADGF--------ETENFGKVIFVLTKGDSSNYEERIENQD--------- 619
++AD Q +K+L + F + E KVIF+LTK +SS+ +++N+D
Sbjct: 688 EMADSQLMKLLENAFHNGKFEDMKEETVQKVIFILTKDNSSD---KMKNRDLWPPQSSSS 744
Query: 620 ----SVINMTLKVNERNQNFDHKRKAEWEFAN 647
SVINM LK+ E N DHKRKAEWEF N
Sbjct: 745 SSSSSVINMILKIEEPNS--DHKRKAEWEFEN 774
>gi|449531621|ref|XP_004172784.1| PREDICTED: uncharacterized protein LOC101230769 [Cucumis sativus]
Length = 466
Score = 347 bits (889), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 227/515 (44%), Positives = 307/515 (59%), Gaps = 91/515 (17%)
Query: 264 SVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCAECTSNYEEEAQLFKSGQKKLLPPW 323
SV++SRL+F SQ ETKPF I +EE L CC ECTSN++ E KS K LP W
Sbjct: 6 SVYDSRLSFF---SQSMETKPFIIGKEEHQNLTCCEECTSNFQNELLHLKSFHSKQLPSW 62
Query: 324 LQPHSSSNANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTY 383
LQ + K+ELVE++RKWN+ C++LH+ QSL GKS SY+S+Y
Sbjct: 63 LQ------SPPKEELVELKRKWNKLCNTLHRDNSV-----------QSLIGKSFSYSSSY 105
Query: 384 PWWPSQSSIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNC-TRKPQGVE 442
PWWP + F D + KP +SN V +FRRQQSC+TIEF+FGN T++ Q E
Sbjct: 106 PWWPKSNISFTDHHH----HQTSKPLQTSNFVPRFRRQQSCTTIEFDFGNAKTKQEQSGE 161
Query: 443 PRLDSLKSNEGKEVKITLALGNSELSDSA----------KLQRSDLYKVLQENVPWQFDS 492
L+SLK+ +GKEVKITLALGNS SDS+ K +R ++ KVL+ENVPW+ +
Sbjct: 162 LSLNSLKNMDGKEVKITLALGNSLFSDSSAESMEMESERKSERGEILKVLEENVPWRSEL 221
Query: 493 IHSIVEVLVECKSAKKAT-WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG 551
I I E ++ K K W L++GND IGKR++ + IAE +FGS D L ++ + G
Sbjct: 222 IPCIAEAVISMKKDDKLIQWVLMEGNDFIGKRKMGIVIAELLFGSVDFLLDLNAKSEEMG 281
Query: 552 VSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGF--------ETENFGKVIFVL 603
+S EML LK ++LVVLVED+++AD Q +K+L + F + E KVIF+L
Sbjct: 282 ISK-CEMLEKALKLNKELVVLVEDVEMADSQLMKLLENAFHNGKFEDMKEETVQKVIFIL 340
Query: 604 TKGDSSNYEERIENQD-------------SVINMTLKVNERNQNFDHKRKAEWEFANKTK 650
TK +SS ++++N+D SVINM LK+ E N DHKRKAEWEF NK+K
Sbjct: 341 TKDNSS---DKMKNRDLWPPQSSSSSSSSSVINMILKIEEPNS--DHKRKAEWEFENKSK 395
Query: 651 SPRIDEKEDATSVTIDNVSSGNKKDFSRQSSF-NTLDLNMKADDEDDEGEQKPGELS-PI 708
+ RI+ +QSS NTLDLN+KA+DE++E E++ GE+S PI
Sbjct: 396 NQRIN----------------------KQSSMNNTLDLNIKAEDEEEEEEEENGEISTPI 433
Query: 709 SSDLTRENITNPALSNGFLDLIQNRFVFNRNSSND 743
+SDLT E L NGF++ I+NRFV N+ S +
Sbjct: 434 TSDLTGET----TLPNGFMESIRNRFVMNKKQSKN 464
>gi|21741941|emb|CAD40432.1| OSJNBa0035B13.5 [Oryza sativa Japonica Group]
gi|215769315|dbj|BAH01544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 1064
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 261/938 (27%), Positives = 417/938 (44%), Gaps = 171/938 (18%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNT------ 54
MREAGFSS+T+K+++E SA + + + H F++P+
Sbjct: 205 MREAGFSSSTVKSNLEGESALMMSTSSSPPP----------PAIPPHFFLDPSIGVGGNG 254
Query: 55 --------FWQNHALFSSQKPASVSKEDIKLVFEVFLRK--KRRNTVIVGDCLSITDALV 104
W L S KED++ V EV +RK +R N V+VGD +S+ +A+
Sbjct: 255 GGGGGGFMLWPAPFLSSPGMAVPSCKEDVRAVLEVMVRKQGRRTNPVVVGDSVSMAEAVA 314
Query: 105 FDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGA 164
+ + R+E GDVP EL H++K + V +R M + +V+ EL+R VD++ GG
Sbjct: 315 GELLRRLEGGDVPDELAGAHLLKLQLSYVHVRLMSRADVDAKAAELRRSVDAVKR--GGL 372
Query: 165 IIYTGDLKWTVDQQESNNNNNFNGE--IASCYNPINHLVSEVGKLVSDCNSASSTR--VW 220
++Y GDL+W +D+ ++++ AS Y+P+ H+V+E+G+L+ D +++ R VW
Sbjct: 373 VVYVGDLRWALDEDHHHHHHPGADHHNTASSYSPVEHMVAELGRLLGDLRASAPPRGRVW 432
Query: 221 LMATASYQTYMKCQMRQPPLEIQWALQAVSIPSG-GLGLS---LHSSSV----------- 265
L+ATASYQTYM+C+ R+P LE WALQAV +P+G G GL+ LH+ +
Sbjct: 433 LVATASYQTYMRCRRRRPSLESAWALQAVVVPTGAGTGLALNNLHAVATTTSNGEPVQQA 492
Query: 266 -----HESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCAECTSNYEEEAQLF-------K 313
H+ + +P +P A E +D L C EC+ NYE EA +
Sbjct: 493 MVATNHQQQQQQLASPFVAMAAEPAARNELDDKLLVLCTECSHNYEREASAVKAEAAADE 552
Query: 314 SGQKKL--LPPWLQPHSSSNANQKDELVEMRRKWNRSCHSLH---QGRHTQSQ-FSSNLY 367
G + LP WL P +++ L+E++RKW+R C LH G Q F + Y
Sbjct: 553 EGPRAAGNLPGWLVPEPP----KENYLIELKRKWSRLCRKLHLCGGGDPCSGQSFGAGAY 608
Query: 368 NNQSLTGKSCSYASTYPWWPSQSSIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTI 427
N +S PWW S S KP S+A F ++
Sbjct: 609 GNGP--------SSLLPWW---------SASCLLPNGGGKP-----SIAGFLGMEAL--- 643
Query: 428 EFNFGNCTRKPQGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQRS---------DL 478
+ P L SL+ E ++V LALG+ LSDSA +L
Sbjct: 644 -----RWSPPAAAALPSLSSLREPECQDVTTALALGSLPLSDSASSSGGGGGDGAAAREL 698
Query: 479 YKVLQENVPWQFDSIHSIVEVLVECKSAKKAT-----WFLLQGNDTIGKRRLALSIAESV 533
+ L++NVPWQ ++ I + + + T W LL+G+D RR+A IAE+
Sbjct: 699 ERRLRKNVPWQRAAVAEIADAVAAGARSGNGTKGAGVWLLLKGSDHAAVRRVAAVIAETH 758
Query: 534 FGSTD--LLFHIDMRK-------RNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFI 584
GS D ++ D K R+D V+ S KLV++V+D++ A +
Sbjct: 759 CGSADRVVVVSADPNKFGCADDFRSDVVARASMA---AAAGGNKLVLVVDDVERAPQHVV 815
Query: 585 KILA----DGFETENFGKVIFVLTKGDSSNYEERIENQ--DSVINMTLKVNERN-QNFDH 637
+ L G + FG L+ ++ + VI++ L +E++ + D
Sbjct: 816 ECLVAASRSGALKDKFGGQELDLSGSVVVMTTSKLADAAVSGVISLRLYTSEQSPPSGDL 875
Query: 638 KRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKA---DDE 694
KRK T SP +++ A + S+GN ++LDLN+ DD+
Sbjct: 876 KRK------TPTSSPPTSDRKRARARR----SAGNG---------HSLDLNLNLFAHDDD 916
Query: 695 DDEGEQKPGELSPISSDLTRENITNPALSNG------FLDLIQNRFVFNRNSSNDGKITG 748
D++ + + SD+T E + + +G L+ I R V + DG G
Sbjct: 917 DNDAGDVDDDDDGVPSDITHEGGGDDSGEHGHSHHRLLLESIATRVV-----TLDGDHHG 971
Query: 749 LFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSLFEKWLKEVFQTSLEAVK 808
A ++E + V+ + SG F + + E+W+ EVF+ + VK
Sbjct: 972 -AAAAVRERLSGRLDGGGR-ELRVDGEAAAALAAASGHFVDEVMERWVAEVFEPAAATVK 1029
Query: 809 IGGKGGGIEIRLCFGCKNDKVFANYGFGDSCLPKKIQI 846
GGK + L G + GF S LP ++ +
Sbjct: 1030 NGGKA----VVLGVGPSGGGAHESVGFMGSVLPSRVHV 1063
>gi|413918032|gb|AFW57964.1| hypothetical protein ZEAMMB73_132211 [Zea mays]
Length = 1030
Score = 265 bits (676), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 259/932 (27%), Positives = 399/932 (42%), Gaps = 188/932 (20%)
Query: 1 MREAGFSSTTIKNHIEDSSA---------SSVFQCYTSSGGGVFSSPCSPSSSEAHHFIN 51
MREAGFSS T+K+++E+ SA + F P PSS +A
Sbjct: 200 MREAGFSSATVKSNLEEESALMPPRSSSSPPLPLPPPPIPPHFFIDPSIPSSGKAGDRFG 259
Query: 52 PNTFWQNHALFSSQKPASVSKEDIKLVFEVFLRK--KRRNTVIVGDCLSITDALVFDFMG 109
W H L ++ P + + +D++ V EV +RK +R N V+VGD +S+ +A+ + +
Sbjct: 260 ---LWPAHFLSAAPGPGACN-DDVRAVLEVMVRKQERRSNPVVVGDSVSMAEAVADELLR 315
Query: 110 RVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLT-SVGGGAIIYT 168
R+ERGDVP+EL H++K + V +R M + +V +EL+R VD++ GGG ++Y
Sbjct: 316 RLERGDVPEELAGAHLLKLQLSYVHIRLMSRGDVNARASELRRSVDAVQLQRGGGLVVYV 375
Query: 169 GDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQ 228
GDL+W +D++ +N+ S Y+P+ H+V+E+G+L+ D AS R WL+ATASYQ
Sbjct: 376 GDLRWALDEEAHDNH------AVSSYSPVEHMVAELGRLLDDLR-ASCGRAWLVATASYQ 428
Query: 229 TYMKCQM-RQPPLEIQWALQAVSIPSG-GLG--------------LSLHSSSVHESRLT- 271
TYM+ Q R+ PLE W LQAV +P+G G G L S+ V LT
Sbjct: 429 TYMRWQQRRRRPLESAWTLQAVVVPTGSGTGLSLNSLGSSSSCSSLQSASAGVPPPMLTS 488
Query: 272 --FSQNP-SQVWETKPFAIKEEEDH--KLNCCAECTSNYEEEAQLFKS-----GQKKLLP 321
QNP +V FA ++E++ +L C ECT NYE EA L K+ G + LP
Sbjct: 489 QPLGQNPFPEVGAATAFAGRDEQEDEMQLALCTECTKNYEREATLVKAEADAEGPRASLP 548
Query: 322 PWL---QPHSSSNANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCS 378
WL +P + ++K L ++RKW+R C LH S+ + Q
Sbjct: 549 GWLVLDRPPADQTPHEK-YLTVLKRKWSRLCRKLH--------LCSDPGSPQC------- 592
Query: 379 YASTYPWWPSQSSIFLDSNSISFAESAMKPHNS-----SNSVAKFRRQQSCSTIEFNFGN 433
PWW S S S S KP + + ++S + +
Sbjct: 593 -----PWW---------SGSCSQPASKGKPSEPRFLGLDGLMGQHTSRRSPPSPSRSPRW 638
Query: 434 CTRKPQGVEPRLDSLKSNEGKEVKITLALGNSELSDSA------------KLQRSDLYKV 481
P G + + V TLAL + LSDSA +L +
Sbjct: 639 APSPPMG----------SGCQGVGTTLALASHLLSDSATSDSRAPGSGDGSAAARELEQR 688
Query: 482 LQENVPWQFDSIHS-IVEVLV---ECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGST 537
L+ N+PWQ +I + I +V E W ++G+D + RR IAE+ GS
Sbjct: 689 LRRNIPWQPRAIVAEIANAVVASRESDDGATGVWLYVKGSDHVATRRAVTVIAETRCGSA 748
Query: 538 DLLFHIDMRKRNDG------VSSHSEMLMGTLKNYEKLVVLVEDIDLADPQF-------I 584
D + D K + V S + + G + V D+AD +
Sbjct: 749 DRVICADPSKFSSAERLCSDVVSRASAMGGKMVVVVVDDVENASRDVADCLVAASKSGSL 808
Query: 585 KILADGFETENFGKVIFVL----TKGDSSNYEERIENQDSVINMTLKVNERNQNFDHKRK 640
K G + G ++ +L T G S R+ ++ + LK
Sbjct: 809 KDRQSGQALDLSGCIVILLASKWTGGSSDQISLRLWAENEASSAALK------------- 855
Query: 641 AEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGEQ 700
KT+SP + K + LDLN+ A+D+ + +
Sbjct: 856 ------RKTESPLRESKR-----------------ARHDAGLGGLDLNLCAEDDPADEDD 892
Query: 701 KPGELSPISSDLTRE----NITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKE 756
+ + SD+T E + + +G L+ + R V N DG T A++
Sbjct: 893 E-----ALPSDITDEGDSSDTSEHGQPHGLLEALAARVVTLDNDDGDGDATASIRARLAR 947
Query: 757 SFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSLFEKWLKEVFQ--TSLEAVKIGGKGG 814
+ + + R VEE ++ + SG F FE W EV + +L VK GGKG
Sbjct: 948 AIGQGWTR-------VEETAVQMLAAASGQFLEDEFESWTSEVLEPAVALATVKNGGKGK 1000
Query: 815 GIEIRLCFGCKNDKVFANYGFGDSCLPKKIQI 846
I + L C + GF S LP ++Q+
Sbjct: 1001 VIVLGL-GPCGESR--ETPGFMGSVLPSRVQV 1029
>gi|326501854|dbj|BAK06419.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1010
Score = 262 bits (670), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 246/907 (27%), Positives = 403/907 (44%), Gaps = 154/907 (16%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNT------ 54
MREAGFSS T+K+++E+ SA + +S P H F++ ++
Sbjct: 196 MREAGFSSATVKSNLEEESALMMSSSSSSP---------PPPVIPPHFFLDHSSIDGCGF 246
Query: 55 -FWQNHALFSSQKPASVSKEDIKLVFEVFLRKK--RRNTVIVGDCLSITDALVFDFMGRV 111
W L S KED++ V EV +RK+ R N V+VGD +S+ +A+ + + +
Sbjct: 247 GMWPAQFLTSPPVAVPCCKEDVRAVLEVMVRKRGRRTNPVVVGDSVSMAEAVAGELLRCL 306
Query: 112 ERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDL 171
ERG+VP+EL H++K + V +R M + +V+ +L+R VD++ GG ++Y GDL
Sbjct: 307 ERGEVPEELAGAHLLKLQLSYVHVRLMSRADVDAKAAQLRRSVDAVQR--GGLVVYVGDL 364
Query: 172 KWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYM 231
+W +D+ + + AS Y+P+ H+V+E+G+L+ D + RVWL+ATASYQTYM
Sbjct: 365 RWALDEDPAGAGADHT---ASSYSPVEHMVAELGRLLDDLR--ARCRVWLVATASYQTYM 419
Query: 232 KCQMR--QPPLEIQWALQAVSIPS-GGLGLS---LHSSS------VHESRLTFSQNPSQV 279
+CQ R QP LE WALQAV++P+ G GL+ LHSSS S ++P
Sbjct: 420 RCQHRRGQPSLESAWALQAVAVPTVSGTGLALNNLHSSSSPSMPKAKASGQQLGKSP-MA 478
Query: 280 WETKPFAIKEEEDHKLNCCAECTSNYEEEAQLFKS-----GQKKLLPPWL-----QPHSS 329
+P A+ E++ K+ C+EC +YE EA + K G + LP WL P
Sbjct: 479 MAAEPMALGSEQEDKMLLCSECNRSYEREASVVKQEAGTEGLRCSLPGWLVLDNKPPADH 538
Query: 330 SNANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQ 389
+Q L+E++ KW+R C LH R Q S L+ S WWPS
Sbjct: 539 QMPHQGKHLIELKMKWSRLCTKLHLWRSQQHDPCSPSCFVPGLSAPPNS------WWPSP 592
Query: 390 SSIFLDSNSISFA-----ESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEP- 443
+ ++ S A E M+ H+ S+S C P +EP
Sbjct: 593 CLLPSGQSTPSIAGFLGLEGLME-HSRSSSRWSPPSPLPC-------------PGLMEPE 638
Query: 444 RLDSLKSNEGKEVKITLALGN-SELSDSAKLQ-------RSDLYKVLQENVPWQ-FDSIH 494
RLD VK TLALG LSD+A + +L + L++ +P Q ++
Sbjct: 639 RLD---------VKTTLALGTLLPLSDTATSEGPAHDGLAHELERRLRKTIPCQTAGTVA 689
Query: 495 SIVEVLVECKS-AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVS 553
IVE + +S +K +G+D + R A+ IAE+ GS D + D +K +
Sbjct: 690 EIVEAVASSRSYGRKGVCLFFKGSDHAAQHRAAVVIAETCCGSADQIIAADPKKYSCAED 749
Query: 554 SHSEML-MGTLKNYEKLVVLVEDIDLADPQFIKILAD----GFETENFGK------VIFV 602
S+++ + +LV+++ D++ A + L G ++ G+ I +
Sbjct: 750 FCSDVVSRACTLSCSRLVLVIPDVEHAPRHLVDYLVAESRCGCIKDHLGRELKLSGSIII 809
Query: 603 LTKGDSSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATS 662
T + +N + ++L++ + D KRKAE E P E + A
Sbjct: 810 FTTSEFANRATDV--------ISLRLWTSSSPADVKRKAEIE-------PPTRECKRA-- 852
Query: 663 VTIDNVSSGNKKDFSRQSSFNTLDLNM---KADDEDDEGEQKPGELSPISSDLTRENITN 719
+ S S + +DLN+ +D DD+ + SD+T E+ T
Sbjct: 853 -----------RHGSGSDSGHGIDLNINPCAGNDTDDDA---------VPSDITHESDTR 892
Query: 720 PALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEE 779
+G L + + + G + + E+ +++ E
Sbjct: 893 ---EHGDLHHLLESVATGVLALDKGADA---DQRAAAAIREVLVGALGREVHLDDEAAEA 946
Query: 780 VLIGSGFFHNSLFEKWLKEVFQTSLEAVKIGGKGGGIEIRLCFGCKNDKVFANYGFGDSC 839
+ S F + + +W EVF+ + A + + GG + L G + GF S
Sbjct: 947 LTAASQHFLDKVLWRWAVEVFEPAAAAALV--ENGGKVVVLGMGPGGGAQVS--GFMGSA 1002
Query: 840 LPKKIQI 846
LP ++ +
Sbjct: 1003 LPSRVLV 1009
>gi|297793231|ref|XP_002864500.1| hypothetical protein ARALYDRAFT_918879 [Arabidopsis lyrata subsp.
lyrata]
gi|297310335|gb|EFH40759.1| hypothetical protein ARALYDRAFT_918879 [Arabidopsis lyrata subsp.
lyrata]
Length = 455
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 202/489 (41%), Positives = 276/489 (56%), Gaps = 61/489 (12%)
Query: 379 YASTYPWWPSQSSIFLDSNSISFAESAMKPHNS--SNSVAKFRRQQSCSTIEFNFG-NCT 435
Y+ P+ S S S S+ +S N +NS+AKFRRQ SC TIEF+ G N
Sbjct: 5 YSYGLPYGSSNES----SRSVPLIDSLGLKQNQRVTNSIAKFRRQNSC-TIEFDLGGNEY 59
Query: 436 RKPQGVEPRLDSLKSNEGKEVKITLALGNSEL-SDS---AKLQRSDLYKVLQENVPWQFD 491
K + E +++G E ITL LG S SDS K + SDL KVL+E++PWQ
Sbjct: 60 EKGEKAE-------NDKGNET-ITLDLGRSLFRSDSLTETKKKISDLVKVLEESLPWQTV 111
Query: 492 SIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR-ND 550
++ I E L++C + KK W +++G DT+ KRR+A +++ESVFGS L HID++K+ N+
Sbjct: 112 TMRLIAESLMDCVTKKKDGWIMIEGRDTVAKRRVARTVSESVFGSIKSLVHIDLKKKGNE 171
Query: 551 GVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFGK-------VIFVL 603
+S +L LKN EK+V L+EDIDLAD +F+K+LAD FE K IF+L
Sbjct: 172 SNTSPETLLSCELKNPEKVVFLIEDIDLADSRFLKLLADRFEERRRSKTGFDHHQAIFIL 231
Query: 604 TKGDSSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSV 663
TK DSSN N+DSV+ + L++ Q+ KRK E + + + E +++ +
Sbjct: 232 TKEDSSNA----RNRDSVLQIGLEITA--QSPGKKRKPESDLS-------VREGKNSKAG 278
Query: 664 TIDNVSSGNKKDFSRQSSFNT--LDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPA 721
I+N ++ SRQSSFN+ LDLN+KA++E+ GE+SPISSDLT E T +
Sbjct: 279 EIENGFWIKREVCSRQSSFNSSYLDLNIKAEEEE-------GEISPISSDLTGEEETEFS 331
Query: 722 LSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVL 781
SN FL+ IQNRFV NR S G + A +E F E K V FSVEE++ EE L
Sbjct: 332 SSN-FLNRIQNRFVLNR-SCEPGIEKAMITAAFREVFPE--KEGGGVRFSVEEKLAEE-L 386
Query: 782 IGSGFFHNSLFEKWLKEVFQTSLEAVKIGGKGGGIEIRLCFGCKND---KVFANYGFGDS 838
G N FE WLKEVFQT L VK GGK IR+ FG D G+ +
Sbjct: 387 CG---VQNGAFESWLKEVFQTGLLTVKKGGKKDTGVIRMVFGGIVDNKGYGGGVGGYMGT 443
Query: 839 CLPKKIQIA 847
LP K+Q++
Sbjct: 444 FLPNKVQVS 452
>gi|414587732|tpg|DAA38303.1| TPA: hypothetical protein ZEAMMB73_613010 [Zea mays]
Length = 1040
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 257/935 (27%), Positives = 397/935 (42%), Gaps = 186/935 (19%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNT------ 54
MREAGFSS T+KN++E+ SA +S H FI+ +
Sbjct: 202 MREAGFSSATVKNNLEEESALMPPPSSSSPPPPP-------PPIPPHFFIDSSISSGGKS 254
Query: 55 -----FWQNHALFSSQKPASVSKEDIKLVFEVFLRK--KRRNTVIVGDCLSITDALVFDF 107
W ++ P + S D++ V EV +RK +R N V+VGD +S+ +A+ +
Sbjct: 255 GDRFGLWPAQ-FLAAPGPGACSA-DVRAVLEVMVRKEGRRSNPVVVGDSVSMAEAVAGEL 312
Query: 108 MGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSL-TSVGGGAII 166
+ +ERGDVP+ L H++K + V +R M + +V +EL+R VD++ GGG ++
Sbjct: 313 LRCLERGDVPEALAGAHLLKLQLSYVHVRLMSRADVNARASELRRSVDAVQLQRGGGLVV 372
Query: 167 YTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATAS 226
GDL+W +D +E+N+N+ S Y+P+ H+V+E+G+L+ D AS R WL+ATAS
Sbjct: 373 CVGDLRWALD-EEANDNHAV-----SSYSPVEHMVAELGRLLDDLR-ASRVRAWLVATAS 425
Query: 227 YQTYMKCQM-RQPPLEIQWALQAVSIPSG-GLGLSLH-----------------SSSVHE 267
YQTYM+ Q R+ PLE WALQAV +P+G G GLSL+
Sbjct: 426 YQTYMRWQQRRRRPLESAWALQAVVVPTGSGSGLSLNILHSTSSSTSLPSASAGVPPATA 485
Query: 268 SRLTFSQNP-SQVWETKPFAIKEEEDH-KLNCCAECTSNYEEEAQLFKS-----GQKKLL 320
+ QNP + FA ++E+D +L C ECT NYE EA L K+ G + L
Sbjct: 486 ASQQLGQNPFAMAGSATEFAGRDEQDEMQLVLCTECTRNYESEASLVKAEDDVEGPRASL 545
Query: 321 PPWL---QPHSSSNANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSC 377
WL P ++ +++ L+E++RKW+R C LH L C
Sbjct: 546 AGWLVLDGPSAAQTPHKQKYLIELKRKWSRLCGKLH------------------LCSDPC 587
Query: 378 SYASTYPWWPSQSSIFLDSNSISFA-----ESAMKPHNSSNSVAKFRRQQSCSTIEFNFG 432
S PWW + + + S A + ++ S + F S +
Sbjct: 588 S--PPCPWWSGSGLLPVSQSKPSVAGFLGLDGLIEQQRKSRTGRWFPPSPSRGPPRWCLS 645
Query: 433 NCTRKP-QGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQR-------------SDL 478
TR+ QG V TLALG+ LSDSA Q +L
Sbjct: 646 PPTREACQG---------------VGTTLALGSHLLSDSATSQSRASGGGDGSAAVVREL 690
Query: 479 YKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAESV 533
+ L+ N+PWQ ++ + + V S ++ +W ++G D RR IAE+
Sbjct: 691 GQRLRRNIPWQPGAVVAEIAKAVVASSRRERDGTLGSWLYVKGRDHSATRRAVTVIAETC 750
Query: 534 FGSTDLLFHIDMRKR-------NDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKI 586
GS + D K +D VS SEM + V D+AD
Sbjct: 751 CGSAGRVVRTDPSKYSCAEELCSDVVSRASEMGGEMVVVVVVDGVENAPCDVADCLVAAS 810
Query: 587 LADGFETENFGK--------VIFVLTK---GDSSNYEERIENQDSVINMTLKVNERNQNF 635
+ + G+ VI V +K G S R+ ++D E + +
Sbjct: 811 KSGSLKDAESGQVLRLSGCIVILVASKLPGGASDPINLRLWSED----------EASSDG 860
Query: 636 DHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDED 695
KR KT+SP+ E E G K + LDLN+ A D+D
Sbjct: 861 ALKR--------KTESPQ-GEGE------------GEGKRARHDAGLGRLDLNLCAGDDD 899
Query: 696 DEGEQKPGELSPISSDLTRENIT--NPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAK 753
+ + + SD+T E + + +G L + V + G T A+
Sbjct: 900 PGEDDE-----AVPSDITDEGGSSEHGQPPHGILGALTAARVVTLDREGGGDATTSIRAR 954
Query: 754 MKESFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSLFEKWLKEVFQ--TSLEAVKIGG 811
+ + + R VEE ++ + SG F E+W EV + ++ VK GG
Sbjct: 955 LARAIGQGGAR-------VEEAAVQALAAASGQFLEEELERWTVEVLEPAVAVATVKNGG 1007
Query: 812 KGGGIEIRLCFGCKNDKVFANYGFGDSCLPKKIQI 846
KG + + L G + + GF S LP ++Q+
Sbjct: 1008 KGKVLVLGLGPGGGSRE---TQGFMGSVLPSRVQV 1039
>gi|414869079|tpg|DAA47636.1| TPA: hypothetical protein ZEAMMB73_303998 [Zea mays]
Length = 1033
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 257/932 (27%), Positives = 394/932 (42%), Gaps = 187/932 (20%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNT------ 54
MREAGFSS T+KN++E+ SA +S P H FI+ +
Sbjct: 202 MREAGFSSATVKNNLEEESALMPPPSSSSPPP-------PPPPIPPHFFIDSSISSGGKS 254
Query: 55 -----FWQNHALFSSQKPASVSKEDIKLVFEVFLRK--KRRNTVIVGDCLSITDALVFDF 107
W ++ P + S D++ V EV +RK +R N V+VGD +S+ +A+ +
Sbjct: 255 GDRFGLWPAQ-FLAAPGPGACSA-DVRAVLEVMVRKEGRRSNPVVVGDSVSMAEAVAGEL 312
Query: 108 MGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSL-TSVGGGAII 166
+ +ERGDVP+ L H++K + V +R M + +V +EL+R VD++ GGG ++
Sbjct: 313 LRCLERGDVPEALAGAHLLKLQLSYVHVRLMSRADVNARASELRRSVDAVQLQRGGGLVV 372
Query: 167 YTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATAS 226
GDL+W +D +E+N+N+ S Y+P+ H+V+E+G+L+ D AS R WL+ATAS
Sbjct: 373 CVGDLRWALD-EEANDNHAV-----SSYSPVEHMVAELGRLLDDLR-ASRVRAWLVATAS 425
Query: 227 YQTYMKCQM-RQPPLEIQWALQAVSIPSG-GLGLSLH-----------------SSSVHE 267
YQTYM+ Q R+ PLE WALQAV +P+G G GLSL+
Sbjct: 426 YQTYMRWQQRRRRPLESAWALQAVVVPTGSGSGLSLNILHSTSSSTSLPSASAGVPPATA 485
Query: 268 SRLTFSQNP-SQVWETKPFAIKEEEDH-KLNCCAECTSNYEEEAQLFKS-----GQKKLL 320
+ QNP + FA ++E+D +L C ECT NYE EA L K+ G + L
Sbjct: 486 ASQQLGQNPFAMAGSATEFAGRDEQDEMQLVLCTECTRNYESEASLVKAEDDVEGPRASL 545
Query: 321 PPWLQPHSSSNANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYA 380
WL + + L+E++RKW+R C LH L CS
Sbjct: 546 AGWL----VLDGPSQKYLIELKRKWSRLCGKLH------------------LCSDPCS-- 581
Query: 381 STYPWWPSQSSIFLDSNSISFA-----ESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCT 435
PWW + + + S A + ++ S + F S + T
Sbjct: 582 PPCPWWSGSGLLPVSQSKPSVAGFLGLDGLIEQQRKSRTGRWFPPSPSRGPPRWCLSPPT 641
Query: 436 RKP-QGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQR-------------SDLYKV 481
R+ QG V TLALG+ LSDSA Q +L +
Sbjct: 642 REACQG---------------VGTTLALGSHLLSDSATSQSRASGGGDGSAAVVRELGQR 686
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAESVFGS 536
L+ N+PWQ ++ + + V S ++ +W ++G D RR IAE+ GS
Sbjct: 687 LRRNIPWQPGAVVAEIAKAVVASSRRERDGTLGSWLYVKGRDHSATRRAVTVIAETCCGS 746
Query: 537 TDLLFHIDMRKR-------NDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILAD 589
+ D K +D VS SEM + V D+AD +
Sbjct: 747 AGRVVRTDPSKYSCAEELCSDVVSRASEMGGEMVVVVVVDGVENAPCDVADCLVAASKSG 806
Query: 590 GFETENFGK--------VIFVLTK---GDSSNYEERIENQDSVINMTLKVNERNQNFDHK 638
+ G+ VI V +K G S R+ ++D E + + K
Sbjct: 807 SLKDAESGQVLRLSGCIVILVASKLPGGASDPINLRLWSED----------EASSDGALK 856
Query: 639 RKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEG 698
R KT+SP+ E E G K + LDLN+ A D+D
Sbjct: 857 R--------KTESPQ-GEGE------------GEGKRARHDAGLGRLDLNLCAGDDDPGE 895
Query: 699 EQKPGELSPISSDLTRENIT--NPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKE 756
+ + + SD+T E + + +G L + V + G T A++
Sbjct: 896 DDE-----AVPSDITDEGGSSEHGQPPHGILGALTAARVVTLDREGGGDATTSIRARLAR 950
Query: 757 SFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSLFEKWLKEVFQ--TSLEAVKIGGKGG 814
+ + R VEE ++ + SG F E+W EV + ++ VK GGKG
Sbjct: 951 AIGQGGAR-------VEEAAVQALAAASGQFLEEELERWTVEVLEPAVAVATVKNGGKGK 1003
Query: 815 GIEIRLCFGCKNDKVFANYGFGDSCLPKKIQI 846
+ + L G + + GF S LP ++Q+
Sbjct: 1004 VLVLGLGPGGGSRE---TQGFMGSVLPSRVQV 1032
>gi|222628569|gb|EEE60701.1| hypothetical protein OsJ_14192 [Oryza sativa Japonica Group]
Length = 1050
Score = 215 bits (547), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 133/402 (33%), Positives = 209/402 (51%), Gaps = 65/402 (16%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNT------ 54
MREAGFSS+T+K+++E SA + + + H F++P+
Sbjct: 205 MREAGFSSSTVKSNLEGESALMMSTSSSPPP----------PAIPPHFFLDPSIGVGGNG 254
Query: 55 --------FWQNHALFSSQKPASVSKEDIKLVFEVFLRK--KRRNTVIVGDCLSITDALV 104
W L S KED++ V EV +RK +R N V+VGD +S+ +A+
Sbjct: 255 GGGGGGFMLWPAPFLSSPGMAVPSCKEDVRAVLEVMVRKQGRRTNPVVVGDSVSMAEAVA 314
Query: 105 FDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGA 164
+ + R+E GDVP EL H++K + V +R M + +V+ EL+R VD++ GG
Sbjct: 315 GELLRRLEGGDVPDELAGAHLLKLQLSYVHVRLMSRADVDAKAAELRRSVDAVKR--GGL 372
Query: 165 IIYTGDLKWTVDQQESNNNNNFNGE--IASCYNPINHLVSEVGKLVSDCNSASSTR--VW 220
++Y GDL+W +D+ ++++ AS Y+P+ H+V+E+G+L+ D +++ R VW
Sbjct: 373 VVYVGDLRWALDEDHHHHHHPGADHHNTASSYSPVEHMVAELGRLLGDLRASAPPRGRVW 432
Query: 221 LMATASYQTYMKCQMRQPPLEIQWALQAVSIPSG-GLGLS---LHSSSV----------- 265
L+ATASYQTYM+C+ R+P LE WALQAV +P+G G GL+ LH+ +
Sbjct: 433 LVATASYQTYMRCRRRRPSLESAWALQAVVVPTGAGTGLALNNLHAVATTTSNGEPVQQA 492
Query: 266 -----HESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCAECTSNYEEEAQLF-------K 313
H+ + +P +P A E +D L C EC+ NYE EA +
Sbjct: 493 MVATNHQQQQQQLASPFVAMAAEPAARNELDDKLLVLCTECSHNYEREASAVKAEAAADE 552
Query: 314 SGQKKL--LPPWLQPHSSSNANQKDELVEMRRKWNRSCHSLH 353
G + LP WL P +++ L+E++RKW+R C LH
Sbjct: 553 EGPRAAGNLPGWLVPEPP----KENYLIELKRKWSRLCRKLH 590
Score = 61.6 bits (148), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 104/431 (24%), Positives = 179/431 (41%), Gaps = 66/431 (15%)
Query: 452 EGKEVKITLALGNSELSDSAKLQRS---------DLYKVLQENVPWQFDSIHSIVEVLVE 502
E ++V LALG+ LSDSA +L + L++NVPWQ ++ I + +
Sbjct: 649 ECQDVTTALALGSLPLSDSASSSGGGGGDGAAARELERRLRKNVPWQRAAVAEIADAVAA 708
Query: 503 CKSAKKAT-----WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSS--H 555
+ T W LL+G+D RR+A IAE+ GS D + + G +
Sbjct: 709 GARSGNGTKGAGVWLLLKGSDHAAVRRVAAVIAETHCGSADRVVVVSADPNKFGCADDFR 768
Query: 556 SEMLMGTLKNYE----KLVVLVEDIDLADPQFIKILA----DGFETENFGKVIFVLTKGD 607
S+++ KLV++V+D++ A ++ L G + FG L+
Sbjct: 769 SDVVARASMAAAAGGNKLVLVVDDVERAPQHVVECLVAASRSGALKDKFGGQELDLSGSV 828
Query: 608 SSNYEERIENQ--DSVINMTLKVNERNQ-NFDHKRKAEWEFANKTKSPRIDEKEDATSVT 664
++ + VI++ L +E++ + D KRK T SP +++ A +
Sbjct: 829 VVMTTSKLADAAVSGVISLRLYTSEQSPPSGDLKRK------TPTSSPPTSDRKRARARR 882
Query: 665 IDNVSSGNKKDFSRQSSFNTLDLNMKA---DDEDDEGEQKPGELSPISSDLTRENITNPA 721
S+GN ++LDLN+ DD+D++ + + SD+T E + +
Sbjct: 883 ----SAGNG---------HSLDLNLNLFAHDDDDNDAGDVDDDDDGVPSDITHEGGGDDS 929
Query: 722 LSNG------FLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEER 775
+G L+ I R V + DG G A ++E + V+
Sbjct: 930 GEHGHSHHRLLLESIATRVV-----TLDGDHHGAA-AAVRERLSGRLDGGGR-ELRVDGE 982
Query: 776 VLEEVLIGSGFFHNSLFEKWLKEVFQTSLEAVKIGGKGGGIEIRLCFGCKNDKVFANYGF 835
+ SG F + + E+W+ EVF+ + VK GGK + L G + GF
Sbjct: 983 AAAALAAASGHFVDEVMERWVAEVFEPAAATVKNGGKA----VVLGVGPSGGGAHESVGF 1038
Query: 836 GDSCLPKKIQI 846
S LP ++ +
Sbjct: 1039 MGSVLPSRVHV 1049
>gi|47496876|dbj|BAD19840.1| heat shock protein-related-like [Oryza sativa Japonica Group]
Length = 778
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 140/429 (32%), Positives = 216/429 (50%), Gaps = 59/429 (13%)
Query: 1 MREAGFSSTTIKNHIEDSSA-----SSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTF 55
MREAGFSS +K+ +E+ A CY+SS SP +AH
Sbjct: 208 MREAGFSSAAVKSTLEEGGAMLPSLGGHHVCYSSS------SPEPHIDLDAHAASGGGAP 261
Query: 56 WQNHALFSSQKPASVSKEDIKLVFEVFLRKK--RRNTVIVGDCLSITDALVFDFMGRVER 113
W L +S +ED++ + EV +RK+ R N V+VGD +S+ +A V + M R+E
Sbjct: 262 WPAQFLHRPDTGSSCKEEDVRAILEVMVRKQWARPNPVVVGDSVSVAEASVAELMRRLET 321
Query: 114 GDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLT--SVGGGAIIYTGDL 171
GDVP EL+ HV++ H + V LR M + +V+ + EL+R +S+ + G +IY GD+
Sbjct: 322 GDVPGELRGAHVLRLHLSRVHLRLMTRADVDAQVAELRRTANSIVVDAKAAGLVIYVGDV 381
Query: 172 KWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYM 231
+W VD + ++++ +A P +H+V+E+ +L+S+ +AS R WL+A ASYQTY+
Sbjct: 382 RWAVDDDDHHHHH----ALAEYSAPEDHMVAELARLMSELRAASRGRAWLVAAASYQTYV 437
Query: 232 -----KCQMRQPPLEIQWALQAVSIP-----SGGLGLSL---HSSSVHESRLTFSQNPSQ 278
+ + R P LE W+LQAV +P G GLSL + SR+ ++
Sbjct: 438 RCQQRRRRRRAPSLEATWSLQAVVVPAGAGADAGTGLSLGRRAPPAPPPSRVAEDDQIAK 497
Query: 279 VWE--TKPFAIKEEEDHKLNCCAECTSNYEEEAQLFKS---GQKKLL---PPWLQPHSS- 329
+ E T A+ ++ CAEC YE+EA ++ G L P W PH++
Sbjct: 498 LGEIPTLDLALGGDDGGVPALCAECADGYEKEASQVRAKADGTTLALTYFPGW--PHANE 555
Query: 330 SNANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQ 389
+ K EL+E+RRKW C +H S +N+Q+ S S PWW
Sbjct: 556 PQTSHKAELMELRRKWGILCQRVH----------SRSHNDQA------SVPSPMPWWCRP 599
Query: 390 SSIFLDSNS 398
SS+ D +
Sbjct: 600 SSVSRDGEA 608
>gi|218190701|gb|EEC73128.1| hypothetical protein OsI_07140 [Oryza sativa Indica Group]
Length = 777
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 137/428 (32%), Positives = 213/428 (49%), Gaps = 58/428 (13%)
Query: 1 MREAGFSSTTIKNHIEDSSA-----SSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTF 55
MREAGFSS +K+ +E+ A CY+SS SP +AH
Sbjct: 208 MREAGFSSAAVKSTLEEGGAMLPSLGGHHVCYSSS------SPEPHIDLDAHAASGGGAP 261
Query: 56 WQNHALFSSQKPASVSKEDIKLVFEVFLRKK--RRNTVIVGDCLSITDALVFDFMGRVER 113
W L +S +ED++ + EV +RK+ R N V+VGD +S+ +A V + M R+E
Sbjct: 262 WPAQFLHRPDTGSSCKEEDVRAILEVMVRKQWARPNPVVVGDSVSVAEASVAELMRRLET 321
Query: 114 GDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLT--SVGGGAIIYTGDL 171
GDVP EL+ HV++ H + V LR M + +V+ + EL+R +S+ + G +IY GD+
Sbjct: 322 GDVPGELRGAHVLRLHLSRVHLRLMTRADVDAQVAELRRTANSIVVDAKAAGLVIYVGDV 381
Query: 172 KWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYM 231
+W VD + ++++ +A P +H+V+E+ +L+S+ +AS R WL+A ASYQTY+
Sbjct: 382 RWAVDDDDHHHHH----ALAEYSAPEDHMVAELARLMSELRAASRGRAWLVAAASYQTYV 437
Query: 232 -----KCQMRQPPLEIQWALQAVSIP-------SGGLGLSLHSSSVHESRLTFSQNPSQV 279
+ + R P LE W+LQAV +P GL L + R+ +++
Sbjct: 438 RCQQRRRRRRAPSLEATWSLQAVVVPAGAGADAGTGLSLGRRAPPAPPPRVAEDDQIAKL 497
Query: 280 WE--TKPFAIKEEEDHKLNCCAECTSNYEEEAQLFKS---GQKKLL---PPWLQPHSS-S 330
E T A+ ++ CAEC YE+EA ++ G L P W PH++
Sbjct: 498 GEIPTLDLALGGDDGGVPALCAECADGYEKEASQVRAKADGTTLALTYFPGW--PHANEP 555
Query: 331 NANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQS 390
+ K EL+E+RRKW C +H S +N+Q+ S S PWW S
Sbjct: 556 QTSHKAELMELRRKWGILCQRVH----------SRSHNDQA------SVPSPMPWWCRPS 599
Query: 391 SIFLDSNS 398
S+ D +
Sbjct: 600 SVSRDGEA 607
>gi|357142263|ref|XP_003572512.1| PREDICTED: uncharacterized protein LOC100838396 [Brachypodium
distachyon]
Length = 720
Score = 186 bits (472), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 131/420 (31%), Positives = 202/420 (48%), Gaps = 85/420 (20%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSS +K++IE+ SAS + + S + I P+ F + H
Sbjct: 186 MREAGFSSAAVKSNIEEESAS------------MLAHHHHHHQSASVALIRPHFFNEPHI 233
Query: 61 L-----------FSSQKP-----ASVSKEDIKLVFEVFLRK----KRRNTVIVGDCLSIT 100
L FS+Q P +S +ED++ + E +RK +R N V+VGD S+
Sbjct: 234 LDFPTNGGFGTPFSNQAPDGVVGSSCKEEDVRAILEAMMRKQGGRRRANPVVVGDTASVA 293
Query: 101 DALVFDFMGRVERGDV-PQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTS 159
+A V M R++RGDV P EL+ V++ H P RFM + +++ ++ +L+R+ T+
Sbjct: 294 EASVGQLMRRLDRGDVLPDELRGARVLRLHHQP---RFMTRADLDASVADLRRRSADATA 350
Query: 160 VGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRV 219
G IIY GD++W VD + +A H+ +E+ +L + +A R
Sbjct: 351 ---GVIIYVGDIRWAVD----------DAGLA------EHMAAELARLQGELMAARRGRA 391
Query: 220 WLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSG-GLGLSLHSSSVHESRLTFS-QNPS 277
WL+A ASY+TYM+C R PLE W LQ V +P+G G GL+L + S
Sbjct: 392 WLVAAASYKTYMRC--RGSPLEAAWELQPVVVPAGAGNGLALGPRAAPPIPAAPSGMKQG 449
Query: 278 QVWETKPFAIKE----EEDHKLNCCAECTSNYEEEAQLFKSGQKKL------LPPWLQPH 327
Q+ + + EED CAEC ++YE+EA ++ + + P W +
Sbjct: 450 QINRVPEVPVWDHASGEEDDVPALCAECANSYEKEASAVRAKAQDITLALTYFPGWPRA- 508
Query: 328 SSSNANQKDELVEMRRKWNRS-CHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWW 386
A+ KDEL+E++ KW+RS C LH H + ++N AS PWW
Sbjct: 509 DEPQASDKDELLELKMKWSRSCCQMLHLRGHQRPSITTN--------------ASPSPWW 554
>gi|297602401|ref|NP_001052404.2| Os04g0298700 [Oryza sativa Japonica Group]
gi|255675299|dbj|BAF14318.2| Os04g0298700 [Oryza sativa Japonica Group]
Length = 517
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/281 (36%), Positives = 161/281 (57%), Gaps = 33/281 (11%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNT------ 54
MREAGFSS+T+K+++E SA + + + H F++P+
Sbjct: 205 MREAGFSSSTVKSNLEGESALMMSTSSSPPP----------PAIPPHFFLDPSIGVGGNG 254
Query: 55 --------FWQNHALFSSQKPASVSKEDIKLVFEVFLRK--KRRNTVIVGDCLSITDALV 104
W L S KED++ V EV +RK +R N V+VGD +S+ +A+
Sbjct: 255 GGGGGGFMLWPAPFLSSPGMAVPSCKEDVRAVLEVMVRKQGRRTNPVVVGDSVSMAEAVA 314
Query: 105 FDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGA 164
+ + R+E GDVP EL H++K + V +R M + +V+ EL+R VD++ GG
Sbjct: 315 GELLRRLEGGDVPDELAGAHLLKLQLSYVHVRLMSRADVDAKAAELRRSVDAVKR--GGL 372
Query: 165 IIYTGDLKWTVDQQESNNNNNFNGE--IASCYNPINHLVSEVGKLVSDCNSASSTR--VW 220
++Y GDL+W +D+ ++++ AS Y+P+ H+V+E+G+L+ D +++ R VW
Sbjct: 373 VVYVGDLRWALDEDHHHHHHPGADHHNTASSYSPVEHMVAELGRLLGDLRASAPPRGRVW 432
Query: 221 LMATASYQTYMKCQMRQPPLEIQWALQAVSIPSG-GLGLSL 260
L+ATASYQTYM+C+ R+P LE WALQAV +P+G G GL+L
Sbjct: 433 LVATASYQTYMRCRRRRPSLESAWALQAVVVPTGAGTGLAL 473
>gi|242061494|ref|XP_002452036.1| hypothetical protein SORBIDRAFT_04g017380 [Sorghum bicolor]
gi|241931867|gb|EES05012.1| hypothetical protein SORBIDRAFT_04g017380 [Sorghum bicolor]
Length = 789
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/394 (29%), Positives = 188/394 (47%), Gaps = 59/394 (14%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVF-------QCYTSSGGGVFSSPCSPSSSEAHHFINP- 52
MREAGFSS +K ++E+ SA+ + SS P + H F+ P
Sbjct: 200 MREAGFSSAAVKTNLEEESAAMLLGLGSHHASSTPSSCSPAPPPPAAVVVVPPHFFLEPY 259
Query: 53 ----------NTFWQNHALFS-SQKPASVSKEDIKLVFEVFLRKK----RRNTVIVGDCL 97
W +L S S P + ED++ + EV L ++ R N V+VGD
Sbjct: 260 GGFPAHASGSGALWAAPSLESKSPSPCPCNAEDVRAILEVMLTRRQGRSRANPVVVGDSA 319
Query: 98 SITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSL 157
S+ +A V + M R+ERGDVP EL+ V++ H + V +R M + +V+ + +L+R V +
Sbjct: 320 SVAEASVAELMRRMERGDVPDELRGARVLRLHLSHVHVRLMTRADVDAWVADLRRSVGAA 379
Query: 158 TS---VGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSA 214
T G G +IY GD++W VD +N+++ G ++P HL +E+ +L+ +
Sbjct: 380 TGTDNTGAGLVIYVGDMRWAVD----SNDDDARG-----FSPAAHLAAELARLLGELRLR 430
Query: 215 SST-----RVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESR 269
+++ R WL+A ASY T+M+CQ LE+ W LQ VS+P+ R
Sbjct: 431 AASHGHGGRAWLVAAASYGTFMRCQRSS--LEVTWDLQPVSVPA--GAGGGLLDLELGPR 486
Query: 270 LTFSQNPSQVWETKP-------FAIKEEEDHKL-NCCAECTSNYEEEAQLFKSGQK---- 317
+ +P+ P A K+E+ + CAEC YE EA + ++
Sbjct: 487 AATASSPADGKAAHPAQLPLLDLAPKQEDGVPMPTLCAECAKYYENEATVVRAKAAGTNL 546
Query: 318 --KLLPPWLQPHSSSNANQKDELVEMRRKWNRSC 349
P W Q + KD+L+E++RKW+R C
Sbjct: 547 ALTFFPGWPQ-ADEPKTSHKDDLMELKRKWSRLC 579
>gi|297721177|ref|NP_001172951.1| Os02g0464900 [Oryza sativa Japonica Group]
gi|255670883|dbj|BAH91680.1| Os02g0464900 [Oryza sativa Japonica Group]
Length = 550
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 126/398 (31%), Positives = 198/398 (49%), Gaps = 53/398 (13%)
Query: 26 CYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHALFSSQKPASVSKEDIKLVFEVFLRK 85
CY+SS SP +AH W L +S +ED++ + EV +RK
Sbjct: 11 CYSSS------SPEPHIDLDAHAASGGGAPWPAQFLHRPDTGSSCKEEDVRAILEVMVRK 64
Query: 86 K--RRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEV 143
+ R N V+VGD +S+ +A V + M R+E GDVP EL+ HV++ H + V LR M + +V
Sbjct: 65 QWARPNPVVVGDSVSVAEASVAELMRRLETGDVPGELRGAHVLRLHLSRVHLRLMTRADV 124
Query: 144 EMNLTELKRKVDSLT--SVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLV 201
+ + EL+R +S+ + G +IY GD++W VD + ++++ +A P +H+V
Sbjct: 125 DAQVAELRRTANSIVVDAKAAGLVIYVGDVRWAVDDDDHHHHHA----LAEYSAPEDHMV 180
Query: 202 SEVGKLVSDCNSASSTRVWLMATASYQTYM-----KCQMRQPPLEIQWALQAVSIP---- 252
+E+ +L+S+ +AS R WL+A ASYQTY+ + + R P LE W+LQAV +P
Sbjct: 181 AELARLMSELRAASRGRAWLVAAASYQTYVRCQQRRRRRRAPSLEATWSLQAVVVPAGAG 240
Query: 253 ---SGGLGLSLHSSSVHESRLTFSQNPSQVWE--TKPFAIKEEEDHKLNCCAECTSNYEE 307
GL L + R+ +++ E T A+ ++ CAEC YE+
Sbjct: 241 ADAGTGLSLGRRAPPAPPPRVAEDDQIAKLGEIPTLDLALGGDDGGVPALCAECADGYEK 300
Query: 308 EAQLFKS---GQKKLL---PPWLQPHSS-SNANQKDELVEMRRKWNRSCHSLHQGRHTQS 360
EA ++ G L P W PH++ + K EL+E+RRKW C +H
Sbjct: 301 EASQVRAKADGTTLALTYFPGW--PHANEPQTSHKAELMELRRKWGILCQRVH------- 351
Query: 361 QFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNS 398
S +N+Q+ S S PWW SS+ D +
Sbjct: 352 ---SRSHNDQA------SVPSPMPWWCRPSSVSRDGEA 380
>gi|359484916|ref|XP_002266859.2| PREDICTED: chaperone protein ClpB-like [Vitis vinifera]
Length = 1060
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 253/969 (26%), Positives = 419/969 (43%), Gaps = 180/969 (18%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSS--GGGVFSSPCSPSSSEA-----HHFINPN 53
MREA FSS +K IE S S + S G G F P +P+S+ + ++NP
Sbjct: 148 MREASFSSPAVKATIEQSMNSPPTPNVSPSPIGLGGFRGPGAPTSTPTPTPTRNLYLNPR 207
Query: 54 TFWQNHALFSSQKPASVSK--EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRV 111
Q +A ++ S + E++K V ++ LR K+RN V+VG+ S +A++ + + R+
Sbjct: 208 LQQQGNAATAAAANQSGHQRAEEVKRVVDILLRTKKRNPVLVGE--SEPEAVMKELLRRI 265
Query: 112 ER---GDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIY- 167
E+ GD P LK VI H ++L + ++ L EL R V++ +GGG+II
Sbjct: 266 EKRDFGDGP--LKNVEVISLHRE-LSLNNSDRTQIPTKLKELGRLVEA--RIGGGSIILD 320
Query: 168 TGDLKWTVDQQESNNNNNFNGEIAS--CYNPINHLVSEVGKLVSDCNSASSTRVWLMATA 225
GDLKW V +Q N +G + V+E+GKL++ S+ R+WL+ TA
Sbjct: 321 LGDLKWLV-EQPVNLGVAGSGTVGQQVVSEAGRAAVAEMGKLLATFGEGSNGRLWLIGTA 379
Query: 226 SYQTYMKCQMRQPPLEIQWALQAVSI----PSGGL----GLSLHSSSVHESRLTFSQNPS 277
+ +TY++CQ+ P +E W LQAV I P GL G + SS ES LT +N
Sbjct: 380 TCETYLRCQVYHPSMENDWDLQAVPIAARTPVPGLFSRFGTNGILSSSVES-LTPMKNFP 438
Query: 278 QVWETKPFAIKEEED--HKLNCCAECTSNYEEEAQLFKSGQ-------------KKLLPP 322
P + E D K++CC +C NYE+E + + + LP
Sbjct: 439 TAITALPRRVSENMDPAQKMSCCPQCMENYEQELGKLEGQEFEKSSSEVKSEVSRSSLPQ 498
Query: 323 WLQPHSSSNANQK---------DELV------EMRRKWNRSCHSLHQGRH---------T 358
WL+ + + + K EL+ ++ +KWN +C LH H T
Sbjct: 499 WLKNAKALDGDVKTTDQSQTKDQELIWKQKPQDLLKKWNDTCLHLHPNFHQPNLNSERIT 558
Query: 359 QSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSIS--FAESAMKPHNSS--NS 414
+ S N +L G+ P ++ L+SN ++ E A+ P S
Sbjct: 559 PTALSMTGLYNATLLGRQAFQPKLQPTRNLGETLQLNSNLVANQPCEQAVTPPGSPVRTD 618
Query: 415 VAKFRRQQSCSTIE-------FNFGNCTRKPQGVEPRLDSLKSNEGKEVKITLALGNSEL 467
+ R + + +T E +F C + S N+ E++ N +L
Sbjct: 619 LVLGRTKINETTTEKIHKEHVKDFFQC----------ISSESLNKFHELQ------NDKL 662
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK---------SAKKATWFLLQGND 518
S L K L E V WQ D+ ++ + +CK +K W L G D
Sbjct: 663 SPLDADSVKKLLKGLAEKVSWQQDAARTVATTVTQCKMGNGKRRSAGSKGDIWLLFTGPD 722
Query: 519 TIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGV-------SSHSEMLMGTLKNYEKLVV 571
IGK+++A +++E V G ++ + R R+DG + + + ++ V+
Sbjct: 723 RIGKKKMAAALSELVCGVNPIMICLGSR-RDDGELDMNFRGKTAVDRIAEAVRRNHFSVI 781
Query: 572 LVEDIDLADPQF---IK------ILADGFETE-NFGKVIFVLTKGDSSNYEERIENQDSV 621
++EDID AD IK L D E + G VIF+LT +N+ ++N+ S+
Sbjct: 782 MLEDIDEADMLVQGSIKRAMERGRLVDSHGREVSLGNVIFILT----ANW--LVDNRKSL 835
Query: 622 INMTLKVNERNQNF--------------DHKRKAEW-EFANKTKSPRIDEKEDATSVTID 666
N TL E+ + KR+A W +++ PR KE+ ++++ D
Sbjct: 836 SNSTLLNEEKLASIAGGGWQLKLSASEKSAKRRANWLHDEDRSTKPR---KENGSALSFD 892
Query: 667 NVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGF 726
+ + +D S N+ DL + D ED++G + L P S+ +RE
Sbjct: 893 LNQAADTEDDRADGSRNSSDLTI--DHEDEQGPENRC-LPPTSA--SRE----------L 937
Query: 727 LDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSGF 786
L+ + N F N I + + F + +K++ VE+ LE++L G +
Sbjct: 938 LNSVDNVITFKPVDFN--PIRHQVRSCIARKFSSVMG--DKLSIQVEDEALEKIL-GGVW 992
Query: 787 FHNSLFEKWLKEV-------FQTSLEAVKIGGKGGGIEIRLCFGCKNDKVFANYGFGDSC 839
S E+W ++V + S+ + + +RL F D + G+GD
Sbjct: 993 LGRSGLEEWAEKVLVPGFHQLKASMSSTDAACDESTMLVRLEF---FDSDSDSRGYGD-W 1048
Query: 840 LPKKIQIAL 848
LP KI + +
Sbjct: 1049 LPSKITVVV 1057
>gi|297740197|emb|CBI30379.3| unnamed protein product [Vitis vinifera]
Length = 430
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 159/301 (52%), Gaps = 25/301 (8%)
Query: 70 VSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFH 129
V ED+ V E + K+R+NTVIVG+CL+ + +V M +V++GDVP+ L+ +I
Sbjct: 108 VRNEDVMSVIENLMNKRRKNTVIVGECLATIEGVVRGVMDKVDKGDVPEALRDVKLISLP 167
Query: 130 FAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGE 189
+ +EEVE L ELK V S VG G I+Y DLKWT D + S++ N
Sbjct: 168 L--FSFGHHSREEVEQKLGELKSLVKS--CVGRGVILYLEDLKWTTDYRASSSEQGRNY- 222
Query: 190 IASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAV 249
Y P+ H++ E+GKLV C + R WLM A++QTY +C+ P LE W+L +
Sbjct: 223 ----YCPVEHMIMELGKLV--CGFGENGRFWLMGIATFQTYSRCRTGHPSLETIWSLHPL 276
Query: 250 SIPSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCAECTSNYEEEA 309
+IP+ L LSL S +S+ FS + + ++ + +L CCA+C++N+E EA
Sbjct: 277 TIPASSLALSLMPDSDLQSQ--FSSKKAGSGTSNWLMLEGGAEKQLTCCADCSANFENEA 334
Query: 310 QLFKS------GQKKLLPPWLQPHSSSNA----NQKDELV--EMRRKWNRSCHSLHQGRH 357
+ + LP WLQ + N N +D + ++ +KWN C S H+ H
Sbjct: 335 RSIPTSTCNSDSTTSTLPTWLQQYKDENKKLSRNDQDCVAVRDLCKKWNSICSSAHKQPH 394
Query: 358 T 358
+
Sbjct: 395 S 395
>gi|225464404|ref|XP_002269046.1| PREDICTED: uncharacterized protein LOC100254987 [Vitis vinifera]
Length = 840
Score = 172 bits (436), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 120/374 (32%), Positives = 184/374 (49%), Gaps = 56/374 (14%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSST ++ +IE + + V SP S S+ NP Q
Sbjct: 149 MREAGFSSTQLRTNIEQAVSLDVCS----------QSPAVSSLSKEITLNNPFDEAQ--- 195
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQEL 120
+ED+K + + F K+RRNTV+VG+ L+ + +V M + ERGDVP +L
Sbjct: 196 -----------EEDVKSLLDAFTSKRRRNTVVVGETLASAEGVVRGLMNKFERGDVPGDL 244
Query: 121 KQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQES 180
+ I +L+ + KEEVE L +L + S V G ++Y GDLKW V + ES
Sbjct: 245 RYVQFISLPL--FSLKNLSKEEVEQKLVKLTCLLKSY--VCRGVVLYLGDLKW-VSEFES 299
Query: 181 NNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPL 240
N GE + +P+ H++ E+G+++ C R+WL+ TA++QTYM+C+ P L
Sbjct: 300 NY-----GERRNYCSPVEHIIMELGRMM--CGIGDRGRMWLLGTATFQTYMRCKAGHPSL 352
Query: 241 EIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCAE 300
E W L ++IP G LGL L+ S + R F S + +++ + D L C
Sbjct: 353 ETIWELHPLTIPVGSLGLGLNLDSNLQGR--FQSKASG--DGTSWSLLQSGDKHLTCSTN 408
Query: 301 CTSNYEEEAQ----LFKSGQ---------KKLLPPWLQPHSSSNANQKDELVEMR---RK 344
C+ N+++E+Q F++G+ LP WLQ E V++R K
Sbjct: 409 CSDNFDKESQSIACSFRNGESTTTITTSTSSSLPSWLQKEKRRKIMDDQECVQVRDLCNK 468
Query: 345 WNRSCHSLHQGRHT 358
WN C S+H+ H+
Sbjct: 469 WNSFCSSVHKKAHS 482
>gi|255584936|ref|XP_002533182.1| ATP binding protein, putative [Ricinus communis]
gi|223527016|gb|EEF29205.1| ATP binding protein, putative [Ricinus communis]
Length = 983
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 245/999 (24%), Positives = 413/999 (41%), Gaps = 216/999 (21%)
Query: 1 MREAGFSSTTIKNHIEDSSASSV-----------------------FQCYTSSGGGVFSS 37
MREA FSS +K IE S + + F + G V
Sbjct: 47 MREASFSSPAVKATIEQSLSMNSSSNSSSGAGGGGGGGCGVSNSSSFGFGFRTPGAVMQV 106
Query: 38 PCSPSSSEAHH--FINPNTFWQNHALFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGD 95
P P + A+ ++NP Q S Q+ E++K V ++ L+ K+RN V+VG+
Sbjct: 107 PV-PGHATANRNLYVNPR-LQQGSVAQSGQQ----RNEEVKRVVDILLKNKKRNPVLVGE 160
Query: 96 CLSITDALVFDFMGRVERGDVPQEL-KQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKV 154
S + +V + + R+E ++ + L K HVI F+ K ++ + EL +
Sbjct: 161 --SEPEMVVKELLKRIENKEIGEGLLKNVHVIHLEKD-----FLDKAQISSKIVELGDSI 213
Query: 155 DSLTSVG----GGAIIYTGDLKWTVDQ----------QESNNNNNFNGEIASCYNPINHL 200
+ T +G GG I+ GDLKW V+Q Q+ + G++A
Sbjct: 214 E--TRIGDLDCGGVILDLGDLKWLVEQAVSFPATAGVQQQQQIVSDAGKVA--------- 262
Query: 201 VSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSI----PSGGL 256
VSE+GKL++ S+ RVWL+ TA+ +TY++CQ+ P +E W LQAV I P G+
Sbjct: 263 VSEMGKLLTRFGERSNGRVWLIGTATCETYLRCQVYHPSMENDWDLQAVPIAPRAPLPGM 322
Query: 257 GLSLHSSSVHESRLTFSQNPSQVWET-KPFAIKEEEDH-----KLNCCAECTSNYEEE-- 308
L + + S + S +P + + T P ++ ++ + +CC +C +YE+E
Sbjct: 323 FPRLGPNGILSSSVE-SLSPLKGFPTVTPALLRRPTENFDPARRTSCCPQCMQSYEQELA 381
Query: 309 -----------AQLFKSGQKKLLPPWLQPHSSSN---------ANQKDEL------VEMR 342
++L + LLP WL+ S + A + EL VE++
Sbjct: 382 KITPKESERSSSELKSEATQTLLPQWLKNAKSQDIDTKSFDQTATKDQELMSKQKSVELQ 441
Query: 343 RKWNRSCHSLHQGRH---------TQSQFS-SNLYN---------------NQSLTG--- 374
+KW+ +C LH G H TQ S +NLYN N++L G
Sbjct: 442 KKWHDTCLRLHPGYHQPNVVSERITQPALSMTNLYNPNLHARQPFQPKLGLNRNLGGTPQ 501
Query: 375 ---KSCSYASTYPWWPSQSSIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSC-STIEFN 430
K C P S S S S ++ P + + + +S +T E
Sbjct: 502 LNSKICGTPQLNPQLNSTIDRSPQSPSQSHGQAVTPPGSPVRTDLVLGQAKSKENTPEIG 561
Query: 431 FGNCTRKPQGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQF 490
G T+ G K E + +K+ AL D+ +R L + L E V WQ
Sbjct: 562 HGERTKDFLGRVASEPQPKLTELQAIKLLNAL------DADSFKR--LLRGLLEKVWWQR 613
Query: 491 DSIHSIVEVLVECK---------SAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLF 541
D+ ++ + CK S+K W L G D +GK+++AL++++ V+GS ++
Sbjct: 614 DAASAVATTVTRCKLGNGKQRGNSSKGDIWLLFTGPDRVGKKKMALALSDLVYGSNPIMV 673
Query: 542 HI----DMRKRN---DGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIK--------- 585
+ D R+ + G ++ ++ +N V+++EDID AD ++
Sbjct: 674 SLGSCRDDRESDVNFRGKTAVDRIVEAVRRNPFS-VIMLEDIDEAD-MIVRGSIKRAMER 731
Query: 586 -ILADGFETE-NFGKVIFVLTKGDSSNYEERIENQDSV------------INMTLKVNER 631
L+D E + G VIF+LT + + + N S+ + L + E+
Sbjct: 732 GRLSDSHGREISLGNVIFILTANWLPDNLKFLSNGTSLDETKLASLVSGGWQLRLSLCEK 791
Query: 632 NQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSG--NKKDFSRQSSFNTLDLNM 689
KR+A W + P K+ S ++ + +K D SR SS DL +
Sbjct: 792 T----AKRRASW--LHDEVRPAKPRKDSGLSFDLNEAADAEEDKADGSRNSS----DLTI 841
Query: 690 KADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGL 749
D +DE L+P +S ++RE L + + VF S + G +
Sbjct: 842 ---DHEDEQSLNNRLLTPTTSSVSRE----------LLKSVDDNIVF--KSVDLGSLRSE 886
Query: 750 FLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSLFEKWLKEVFQTSLEAVKI 809
+ + F I + +++ LE++ G SL E+W +E S+ +K+
Sbjct: 887 ISNSVTKKFSTIIS--EGFSLDIQDDALEKIAAGLWLSRGSL-EEWTEEALVPSIRQLKL 943
Query: 810 GGKGGGIEIRLCFGCKNDKVFANYGFGDSCLPKKIQIAL 848
G E R+ + D + GD LP I++A+
Sbjct: 944 KLPTYGEESRV-IRLEPDGDSGSRSDGD-WLPSSIRVAV 980
>gi|147827418|emb|CAN62072.1| hypothetical protein VITISV_031746 [Vitis vinifera]
Length = 861
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 188/375 (50%), Gaps = 37/375 (9%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCS-PSSSEAHHFINPNTFWQNH 59
MREAGFSST ++ +IE A S+ C S S + P + +TF Q
Sbjct: 149 MREAGFSSTQLRTNIEQ--AVSLDVCSQSPAVSSLSKESNNPPLILGTNVSQSSTFIQFG 206
Query: 60 ALFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQE 119
++ + +ED+K + + F K+RRNTV+VG+ L+ + +V M + ERGDVP +
Sbjct: 207 VTLNNPFDEA-QEEDVKSLLDAFTSKRRRNTVVVGETLASAEGVVRGLMNKFERGDVPGD 265
Query: 120 LKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQE 179
L+ I +L+ + KE VE L +L + S V G ++Y GDLKW V + E
Sbjct: 266 LRYVQFISLPL--FSLKNLSKE-VEQKLVKLNCLLKSY--VCRGVVLYLGDLKW-VSEFE 319
Query: 180 SNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPP 239
SN GE + +P+ H++ E+G+++ C R+WL+ TA++QTYM+C+ P
Sbjct: 320 SNY-----GERRNYCSPVEHIIMELGRMM--CGIGDRGRMWLLGTATFQTYMRCKAGHPS 372
Query: 240 LEIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCA 299
LE W L ++IP G LGL L+ S + R F S + +++ + D L C
Sbjct: 373 LETIWELHPLTIPVGSLGLGLNLDSNLQGR--FQSKASG--DGTSWSLLQSGDKHLTCST 428
Query: 300 ECTSNYEEEAQ----LFKSGQ---------KKLLPPWLQPHSSSNANQKDELVEMR---R 343
C+ N+++E+Q F++G+ LP WLQ E V++R
Sbjct: 429 NCSDNFDKESQSIACSFRNGESTTTITTSTSSSLPSWLQKEKRRKIMDDQECVQVRDLCN 488
Query: 344 KWNRSCHSLHQGRHT 358
KWN C S+H+ H+
Sbjct: 489 KWNSFCSSVHKKAHS 503
>gi|255583564|ref|XP_002532538.1| conserved hypothetical protein [Ricinus communis]
gi|223527727|gb|EEF29832.1| conserved hypothetical protein [Ricinus communis]
Length = 882
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 124/403 (30%), Positives = 199/403 (49%), Gaps = 46/403 (11%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSE-----AHHFINPNTF 55
MREAGFSST +K+++E A S+ C +S S +++ +H + T
Sbjct: 150 MREAGFSSTQVKSNVEQ--AVSLEICSQNSAPVSSSKSKESNNNNSVLALSHTQVGARTS 207
Query: 56 WQNHALFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGD 115
++ S+ + KED+ V E + K++R+ VIVG+CL + +V M +V +GD
Sbjct: 208 CRSSPTTSTTSLDPIRKEDVMSVIENLINKRKRSVVIVGECLVSLEGVVKGVMDKVIKGD 267
Query: 116 VPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
VP+ LK+ I F + + + EV+ L ELK + S S G ++ GDLKW V
Sbjct: 268 VPEALKEVKFISFPLSSLG-HLSSRVEVDQKLEELKVHIRSYLS--KGVVLNLGDLKWVV 324
Query: 176 DQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQM 235
+ + +N +P+ H++ E+GKL S S ++ + WL A++QTYMKC+
Sbjct: 325 EYRANN------------LSPMEHMIMEIGKLASGI-SENNGKFWLTGIATFQTYMKCKS 371
Query: 236 RQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKL 295
P LE W L A++IP+G L LSL + S Q+ S+ W ++ EE+ +L
Sbjct: 372 GNPSLETVWGLHALTIPAGSLRLSLITDSN-----KVGQDGSRCW----IMLEGEEEKQL 422
Query: 296 NCCAECTSNYEEEAQLFK-------SGQKKLLPPWLQPHSSSNANQKD-------ELVEM 341
CC +CTS +E EA+ + S LP WLQ + + N + + ++
Sbjct: 423 TCCVDCTSKFENEARSLQSSTSNSDSTTTSTLPAWLQQYKNENQGVNNNNDQDCVSIKDL 482
Query: 342 RRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYP 384
+KWN C S+HQ ++ + + + S S SY YP
Sbjct: 483 CKKWNSICSSIHQKPYSSEKTITFSSVSPSSFTSSFSYDHQYP 525
Score = 45.8 bits (107), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 101/256 (39%), Gaps = 62/256 (24%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS-----------------AKKATWFLLQGNDTI 520
L L++ V WQ D I I +++C+S AK+ TW L QG D
Sbjct: 625 LCNALEKKVTWQKDIIPDIASTILQCRSGMVRRKGKVTRNSSTEQAKEETWLLFQGVDVE 684
Query: 521 GKRRLALSIAESVFGSTDLLFHI-----------------DMRKRNDGVSSHSEMLMGTL 563
K ++A +A+ +FGS + I + R R++ S+ E +
Sbjct: 685 AKEKIAKELAKLIFGSQNNFISISLSSFSSTRADSTEDCRNKRSRDEQSCSYIERFAEAV 744
Query: 564 KNYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGDSSNYE-ERIENQDSVI 622
+ V LVED++ AD GF+ + +G +N + E + D++I
Sbjct: 745 SSNPHRVFLVEDVEQAD----YCSQVGFKR--------AIERGRITNVKGEEVGLSDAII 792
Query: 623 NMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDN-VSSGNKKDFSRQSS 681
++ ++F + +A SP + +K D ++ D G S
Sbjct: 793 ILSC------ESFSSRSRA--------CSPPVKQKTDDYIISQDQEEEKGQGAKMEESSP 838
Query: 682 FNTLDLNMKADDEDDE 697
+LDLN+ DD+ E
Sbjct: 839 CVSLDLNISIDDDSIE 854
>gi|296084461|emb|CBI25020.3| unnamed protein product [Vitis vinifera]
Length = 781
Score = 164 bits (414), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 159/303 (52%), Gaps = 32/303 (10%)
Query: 72 KEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFA 131
+ED+K + + F K+RRNTV+VG+ L+ + +V M + ERGDVP +L+ I
Sbjct: 137 EEDVKSLLDAFTSKRRRNTVVVGETLASAEGVVRGLMNKFERGDVPGDLRYVQFISLPL- 195
Query: 132 PVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIA 191
+L+ + KEEVE L +L + S V G ++Y GDLKW V + ESN GE
Sbjct: 196 -FSLKNLSKEEVEQKLVKLTCLLKSY--VCRGVVLYLGDLKW-VSEFESNY-----GERR 246
Query: 192 SCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSI 251
+ +P+ H++ E+G+++ C R+WL+ TA++QTYM+C+ P LE W L ++I
Sbjct: 247 NYCSPVEHIIMELGRMM--CGIGDRGRMWLLGTATFQTYMRCKAGHPSLETIWELHPLTI 304
Query: 252 PSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCAECTSNYEEEAQ- 310
P G LGL L+ S + R F S + +++ + D L C C+ N+++E+Q
Sbjct: 305 PVGSLGLGLNLDSNLQGR--FQSKASG--DGTSWSLLQSGDKHLTCSTNCSDNFDKESQS 360
Query: 311 ---LFKSGQ---------KKLLPPWLQPHSSSNANQKDELVEMR---RKWNRSCHSLHQG 355
F++G+ LP WLQ E V++R KWN C S+H+
Sbjct: 361 IACSFRNGESTTTITTSTSSSLPSWLQKEKRRKIMDDQECVQVRDLCNKWNSFCSSVHKK 420
Query: 356 RHT 358
H+
Sbjct: 421 AHS 423
>gi|224091901|ref|XP_002309392.1| predicted protein [Populus trichocarpa]
gi|222855368|gb|EEE92915.1| predicted protein [Populus trichocarpa]
Length = 841
Score = 162 bits (409), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 120/378 (31%), Positives = 188/378 (49%), Gaps = 53/378 (14%)
Query: 1 MREAGFSSTTIKNHIEDS--------SASSVFQCYTSSGGGVFS-SPCSPSSSEAHHFIN 51
MREAGFSST +K+++E + SA SV S G V S SP S ++
Sbjct: 150 MREAGFSSTQVKSNVEQAVSLEICSQSAPSVSSKSKESNGLVLSQSPTSSQVGAKATVLD 209
Query: 52 PNTFWQNHALFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRV 111
P + ED+ V E + K+RR+ VIVG+ L+ + +V + +V
Sbjct: 210 P-----------------IKNEDVMCVIENLVNKRRRSFVIVGESLASIEVVVKGVIDKV 252
Query: 112 ERGDVPQELKQTHVIKFHFAPVT-LRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGD 170
++GDVP+ L++ +KF PV+ + EVE L ELK V S +G G ++ GD
Sbjct: 253 QKGDVPEALRE---VKFLTIPVSSFGHFSRVEVEHKLEELKIHVRSY--MGKGVVLNLGD 307
Query: 171 LKWTVDQQESNNNNNFNGEIASCY-NPINHLVSEVGKLVSDCNSASSTRVWLMATASYQT 229
LKW ++ + S++++ E C+ P+ +++ E+GKL + R WLM A++QT
Sbjct: 308 LKWAIENRASSSSS----EQGRCFFCPMEYMIIELGKLACGIGENINGRFWLMGIATFQT 363
Query: 230 YMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKE 289
YMKC+ P L ++IP+G L LSL S S + R ++N + + +
Sbjct: 364 YMKCKSGHPSGGTVLGLHPLTIPAGSLRLSLISDS--DLRCQSTRNKAGNGSSSWILHEG 421
Query: 290 EEDHKLNCCAECTSNYEEEAQLFKS------GQKKLLPPWLQP-------HSSSNANQKD 336
ED +L CCA+C++ +E EA+ F + LP WLQ +S N N
Sbjct: 422 GEDKQLTCCADCSAKFESEARSFPTSTCDSDSTTSGLPAWLQQCKNEKNLQNSDNQNSMS 481
Query: 337 ELVEMRRKWNRSCHSLHQ 354
+ ++ RKWN C S+H+
Sbjct: 482 -IKDLCRKWNSFCSSIHR 498
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 100/252 (39%), Gaps = 64/252 (25%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS-------------AKKATWFLLQGNDTIGKRR 524
L L++ VPWQ D I I +++C+S +K+ TW QG D K +
Sbjct: 594 LSIALEKKVPWQRDIIPEIASTILQCRSGMIRRKGKMKNSESKEETWLFFQGVDVEAKEK 653
Query: 525 LALSIAESVFGSTDLLFHI-----------------DMRKRNDGVSSHSEMLMGTLKNYE 567
+A +A VFGS D + + R R++ S+ E N
Sbjct: 654 IAKELARLVFGSNDSFISVSLSSFSSTRADSTEDCRNKRSRDEQSCSYIERFSEAASNNP 713
Query: 568 KLVVLVEDIDLAD----PQFIKILADGFETENFGKVIFVLTKGDSSNYEERIENQDSVIN 623
+ V LVED++ AD F + + G T + G+ + + D++I
Sbjct: 714 RRVFLVEDVEQADYCSQIGFKRAIESGRITNSNGQEVGL---------------SDAIII 758
Query: 624 MTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFN 683
++ ++F + +A SP I ++ D + DN +G +
Sbjct: 759 LSC------ESFSSRSRA--------CSPPIKQRTDGSYEEEDNAGAGAAL-MEDTTPCI 803
Query: 684 TLDLNMKADDED 695
+LDLN+ DD++
Sbjct: 804 SLDLNISVDDDN 815
>gi|449465230|ref|XP_004150331.1| PREDICTED: uncharacterized protein LOC101218254 [Cucumis sativus]
Length = 1055
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 218/917 (23%), Positives = 369/917 (40%), Gaps = 161/917 (17%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGG-GVFSSPCSPSSSEAHHFINPNTFWQNH 59
MREA FSS +K IE S S + GG G SP P + ++NP Q
Sbjct: 148 MREASFSSPAVKATIEQSMNSPAPASSSPIGGLGFRPSPVGPPR---NLYLNPRLQQQG- 203
Query: 60 ALFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQ- 118
S P E+++ VF++ LR K+RN V+VG+ S +A+V + + R+E ++
Sbjct: 204 ---SVAPPVQQRGEEVRKVFDILLRSKKRNPVLVGE--SEPEAVVKELLRRIENRELGDG 258
Query: 119 ELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLT---SVGGGAIIYTGDLKWTV 175
L VI F + + ++ L EL V+S + GG I+ GDLKW V
Sbjct: 259 TLGNVQVIHFDKEICS---SDRLQIGGRLKELGDLVESRMEKLNGSGGIILDMGDLKWLV 315
Query: 176 DQQESNNNNNFNGEIAS--CYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKC 233
Q + + +G + V E+GKL++ + +R+WL+ TA+ +TY++C
Sbjct: 316 HQPPATGGGSGSGTVQQQVVSEGGRAAVMEMGKLLAKYGNGGGSRLWLIGTATCETYLRC 375
Query: 234 QMRQPPLEIQWALQAVSI----PSGGLGLSLHSSSVHESRL----------TFSQNPSQV 279
Q+ +E W LQAV I P GL L ++ + S + T S P
Sbjct: 376 QVYHASMENDWDLQAVPIAARAPLPGLFPRLGTTGILNSPVESLSSIKGFPTISTIP--- 432
Query: 280 WETKPFAIKE-EEDHKLNCCAECTSNYEEEAQLF--------------KSGQKKLLPPWL 324
+P + + K +CC++C NYE E + F + + LPPWL
Sbjct: 433 --MRPLMHENLDSSRKSSCCSQCMQNYERELEKFVANELDKPSSVTKPEGAKASALPPWL 490
Query: 325 QPHSSSNANQK---------DELV------EMRRKWNRSCHSLHQGRHTQSQFSSNLYNN 369
Q + + + K EL+ E+++KW +C LH H ++F
Sbjct: 491 QNAKAQDEDAKKHETTDNLDKELMRKQKAQELQKKWQDTCLRLHPNFHNLNKFGLERTAP 550
Query: 370 QSLTGKSCSYASTYPWWPSQSSIFLDSN---SISFAESAMKPHNSSNSVAKFRRQQSCST 426
SL + PSQ + L+ ++ + + S VA R S
Sbjct: 551 VSLPLTGLYSPNLLGHQPSQPKLQLNKGFGETLQLKTNPLLASKPSEKVASILRPGSPVR 610
Query: 427 IEFNFGNC---------TRKPQGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQRSD 477
E G T K + V+ L + S G E K+ EL S ++ SD
Sbjct: 611 TELALGRKNDSEILAEETHK-ERVKDLLGCISS--GPENKVC------ELRSSKFIETSD 661
Query: 478 ------LYKVLQENVPWQFDSIHSIVEVLVECK---------SAKKATWFLLQGNDTIGK 522
L K + E V WQ ++ ++ + + K K W L G D +GK
Sbjct: 662 IDSYKRLLKGILEKVWWQQEAASALATSVTQFKLGNGKRRGTVPKGDMWLLFLGPDRVGK 721
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-------EMLMGTLKNYEKLVVLVED 575
+++A ++AE V GS + + ++++DG S S + + ++ V++++D
Sbjct: 722 KKMATALAELVSGSNPITICLGSKRKSDGESEISIRGRTVLDRISEAIRRNRFSVIVLDD 781
Query: 576 IDLADPQFIKILADGFETENF----------GKVIFVLTK------------GDSSNYEE 613
D +D + E F G +IF+LT G+ E+
Sbjct: 782 FDESDLLVRGSIRRAMERGRFTDSHGREISLGNIIFILTATWIPDDMKHLSNGNMLEEEK 841
Query: 614 RIENQDSVINMTLKVNERNQNFDHKRKAEW-EFANKTKSPRIDEKEDATSVTIDNVSSGN 672
+ L V+E+ KR+AEW + + PR+ E +++ D +
Sbjct: 842 FAGLARRTWQLKLSVSEQTV----KRRAEWAQGEERCLKPRL---ESGSAIAFDLNECAD 894
Query: 673 KKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRE-NITNPALSNGFLDLIQ 731
+D S N+ D+ D E + G TR+ + T + S L+ +
Sbjct: 895 AEDEKTDGSLNSSDVT--TDHETEHGLN------------TRQLSFTTASASREMLNTVD 940
Query: 732 NRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSL 791
+ VF + I + +K+ F I K++ ++E +E++ G + N+
Sbjct: 941 DAIVF--KPVDFSPIKHSITSSIKKKFSSIVG--EKMSLELQENAVEKITSGV-WLGNTN 995
Query: 792 FEKWLKEVFQTSLEAVK 808
E+W + SL+ +K
Sbjct: 996 VEEWTENFLVPSLKELK 1012
>gi|449506714|ref|XP_004162827.1| PREDICTED: uncharacterized LOC101218254 [Cucumis sativus]
Length = 1055
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 218/917 (23%), Positives = 369/917 (40%), Gaps = 161/917 (17%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGG-GVFSSPCSPSSSEAHHFINPNTFWQNH 59
MREA FSS +K IE S S + GG G SP P + ++NP Q
Sbjct: 148 MREASFSSPAVKATIEQSMNSPAPASSSPIGGLGFRPSPVGPPR---NLYLNPRLQQQG- 203
Query: 60 ALFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQ- 118
S P E+++ VF++ LR K+RN V+VG+ S +A+V + + R+E ++
Sbjct: 204 ---SVAPPVQQRGEEVRKVFDILLRSKKRNPVLVGE--SEPEAVVKELLRRIENRELGDG 258
Query: 119 ELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLT---SVGGGAIIYTGDLKWTV 175
L VI F + + ++ L EL V+S + GG I+ GDLKW V
Sbjct: 259 TLGNVQVIHFDKEICS---SDRLQIGGRLKELGDLVESRMEKLNGSGGIILDMGDLKWLV 315
Query: 176 DQQESNNNNNFNGEIAS--CYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKC 233
Q + + +G + V E+GKL++ + +R+WL+ TA+ +TY++C
Sbjct: 316 HQPPATGGGSGSGTVQQQVVSEGGRAAVMEMGKLLAKYGNGGGSRLWLIGTATCETYLRC 375
Query: 234 QMRQPPLEIQWALQAVSI----PSGGLGLSLHSSSVHESRL----------TFSQNPSQV 279
Q+ +E W LQAV I P GL L ++ + S + T S P
Sbjct: 376 QVYHASMENDWDLQAVPIAARAPLPGLFPRLGTTGILNSPVESLSSIKGFPTISTIP--- 432
Query: 280 WETKPFAIKE-EEDHKLNCCAECTSNYEEEAQLF--------------KSGQKKLLPPWL 324
+P + + K +CC++C NYE E + F + + LPPWL
Sbjct: 433 --MRPLMHENLDSSRKSSCCSQCMQNYERELEKFVANELDKPSSVTKPEGAKASALPPWL 490
Query: 325 QPHSSSNANQK---------DELV------EMRRKWNRSCHSLHQGRHTQSQFSSNLYNN 369
Q + + + K EL+ E+++KW +C LH H ++F
Sbjct: 491 QNAKAQDEDAKKHETTDNLDKELMRKQKAQELQKKWQDTCLRLHPNFHNLNKFGLERTAP 550
Query: 370 QSLTGKSCSYASTYPWWPSQSSIFLDSN---SISFAESAMKPHNSSNSVAKFRRQQSCST 426
SL + PSQ + L+ ++ + + S VA R S
Sbjct: 551 VSLPLTGLYSPNLLGHQPSQPKLQLNKGFGETLQLKTNPLLASKPSEKVASILRPGSPVR 610
Query: 427 IEFNFGNC---------TRKPQGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQRSD 477
E G T K + V+ L + S G E K+ EL S ++ SD
Sbjct: 611 TELALGRKNDSEILAEETHK-ERVKDLLGCISS--GPENKVC------ELRSSKFIETSD 661
Query: 478 ------LYKVLQENVPWQFDSIHSIVEVLVECK---------SAKKATWFLLQGNDTIGK 522
L K + E V WQ ++ ++ + + K K W L G D +GK
Sbjct: 662 IDSYKRLLKGILEKVWWQQEAASALATSVTQFKLGNGKRRGTVPKGDMWLLFLGPDRVGK 721
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-------EMLMGTLKNYEKLVVLVED 575
+++A ++AE V GS + + ++++DG S S + + ++ V++++D
Sbjct: 722 KKMATALAELVSGSNPITICLGSKRKSDGESEISIRGRTVLDRISEAIRRNRFSVIVLDD 781
Query: 576 IDLADPQFIKILADGFETENF----------GKVIFVLTK------------GDSSNYEE 613
D +D + E F G +IF+LT G+ E+
Sbjct: 782 FDESDLLVRGSIRRAMERGRFTDSHGREISLGNIIFILTATWIPDDMKHLSNGNMLEEEK 841
Query: 614 RIENQDSVINMTLKVNERNQNFDHKRKAEW-EFANKTKSPRIDEKEDATSVTIDNVSSGN 672
+ L V+E+ KR+AEW + + PR+ E +++ D +
Sbjct: 842 FAGLARRTWQLKLSVSEQTV----KRRAEWAQGEERCLKPRL---ETGSAIAFDLNECAD 894
Query: 673 KKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRE-NITNPALSNGFLDLIQ 731
+D S N+ D+ D E + G TR+ + T + S L+ +
Sbjct: 895 AEDEKTDGSLNSSDVT--TDHETEHGLN------------TRQLSFTTASASREMLNTVD 940
Query: 732 NRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSL 791
+ VF + I + +K+ F I K++ ++E +E++ G + N+
Sbjct: 941 DAIVF--KPVDFSPIKHSITSSIKKKFSSIVG--EKMSLELQENAVEKITSGV-WLGNTN 995
Query: 792 FEKWLKEVFQTSLEAVK 808
E+W + SL+ +K
Sbjct: 996 VEEWTENFLVPSLKELK 1012
>gi|356574695|ref|XP_003555481.1| PREDICTED: uncharacterized protein LOC100800986 [Glycine max]
Length = 831
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 118/368 (32%), Positives = 180/368 (48%), Gaps = 55/368 (14%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSST +K +E + + V + + ++ HH PN +H
Sbjct: 150 MREAGFSSTLVKTRVEQAVSMEVCSQKAQAKENI---------TKPHH--QPNL---DH- 194
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQEL 120
V+ +D+ V KRRNTVIVG+ ++ + +V + R E G+VP +L
Sbjct: 195 ---------VNNDDVTSVLSEL--AKRRNTVIVGESVTNAEGVVRGVIERFEVGNVPGDL 243
Query: 121 KQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQES 180
+ + + R + KEEVE L E++ V S VGGG ++Y GDLKW +
Sbjct: 244 RYVQFVSLPL--MCFRNISKEEVEQKLMEVRNLVKSY--VGGGVVLYLGDLKWLFEFWA- 298
Query: 181 NNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPL 240
NF E + Y + H+V E+ KLV C S S+R+WLM ++++TYMKC++ P L
Sbjct: 299 ----NFR-EQKTNYCSVEHMVMELKKLV--CGSGESSRLWLMGISTFKTYMKCKICHPSL 351
Query: 241 EIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCAE 300
E W L +IP G L LSL+ S +++ + ++ F + + L CC +
Sbjct: 352 ETIWELHPFTIPVGILSLSLNLDSDFQAQ----ERNKVFFKDVAFEDRAGVRNHLTCCRD 407
Query: 301 CTSNYEEEAQLFKSGQKKL------LPPWLQPHSSSNAN-----QKDELVEMRRKWNRSC 349
CT N+E+EAQ S K LP WLQ ++ + L ++ +KWN C
Sbjct: 408 CTINFEKEAQSITSTISKKACTTSSLPTWLQNCKEERSDIMEDQENARLKDLCKKWNSLC 467
Query: 350 HSLHQGRH 357
+S+H RH
Sbjct: 468 NSIH--RH 473
>gi|222622817|gb|EEE56949.1| hypothetical protein OsJ_06655 [Oryza sativa Japonica Group]
Length = 630
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/333 (32%), Positives = 170/333 (51%), Gaps = 45/333 (13%)
Query: 89 NTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLT 148
N V+VGD +S+ +A V + M R+E GDVP EL+ HV++ H + V LR M + +V+ +
Sbjct: 150 NPVVVGDSVSVAEASVAELMRRLETGDVPGELRGAHVLRLHLSRVHLRLMTRADVDAQVA 209
Query: 149 ELKRKVDSLT--SVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGK 206
EL+R +S+ + G +IY GD++W VD + ++++ +A P +H+V+E+ +
Sbjct: 210 ELRRTANSIVVDAKAAGLVIYVGDVRWAVDDDDHHHHH----ALAEYSAPEDHMVAELAR 265
Query: 207 LVSDCNSASSTRVWLMATASYQTYM-----KCQMRQPPLEIQWALQAVSIP-------SG 254
L+S+ +AS R WL+A ASYQTY+ + + R P LE W+LQAV +P
Sbjct: 266 LMSELRAASRGRAWLVAAASYQTYVRCQQRRRRRRAPSLEATWSLQAVVVPAGAGADAGT 325
Query: 255 GLGLSLHSSSVHESRLTFSQNPSQVWE--TKPFAIKEEEDHKLNCCAECTSNYEEEAQLF 312
GL L + R+ +++ E T A+ ++ CAEC YE+EA
Sbjct: 326 GLSLGRRAPPAPPPRVAEDDQIAKLGEIPTLDLALGGDDGGVPALCAECADGYEKEASQV 385
Query: 313 KS---GQKKLL---PPWLQPHSS-SNANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSN 365
++ G L P W PH++ + K EL+E+RRKW C +H H
Sbjct: 386 RAKADGTTLALTYFPGW--PHANEPQTSHKAELMELRRKWGILCQRVHSRSH-------- 435
Query: 366 LYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNS 398
N+Q+ S S PWW SS+ D +
Sbjct: 436 --NDQA------SVPSPMPWWCRPSSVSRDGEA 460
>gi|357442825|ref|XP_003591690.1| Heat shock protein [Medicago truncatula]
gi|355480738|gb|AES61941.1| Heat shock protein [Medicago truncatula]
Length = 849
Score = 155 bits (393), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 120/368 (32%), Positives = 177/368 (48%), Gaps = 42/368 (11%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSST +K+ +E A + T SSE H + +
Sbjct: 152 MREAGFSSTLVKSRVEVEQALPIEVSSTKV------------SSEYHKNQSKELSLKPQV 199
Query: 61 LF---SSQKPA-SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDV 116
L S KP V+ +D+ V + K+RRNTVIVG+ +S + + M R E GDV
Sbjct: 200 LSLGGSYTKPIDCVNNDDVTSVLSELV-KRRRNTVIVGESVSNAEGVAKGVMERFEIGDV 258
Query: 117 PQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVD 176
P EL+ + + R + KEEVE E++ V S +G G I+Y GDLKW +
Sbjct: 259 PMELRYVQFVSLPL--ICFRNISKEEVEKKFVEVRSLVKSY--MGRGVILYLGDLKWLFE 314
Query: 177 QQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMR 236
S N Y + H+V E+ KLVS S S+R+WLM A+++TYMKC++
Sbjct: 315 FWSSYCEQKRNY-----YCSVEHMVMEIKKLVS--GSGESSRLWLMGIANFKTYMKCKIS 367
Query: 237 QPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLN 296
P LE W L +IP G L LSL+ S +++ + ++ F K +L
Sbjct: 368 HPSLETIWELHPFTIPVGSLSLSLNFDSDFQAK----ERSMVLFNDLTFEDKVGVGKQLT 423
Query: 297 CCAECTSNYEEEA-----QLFKSGQKKLLPPWLQ----PHSSSNANQKD-ELVEMRRKWN 346
CC +C+ +E EA + K LP WLQ S + +Q++ L ++ +KWN
Sbjct: 424 CCRDCSIKFENEALSLTNNISKKACSSSLPTWLQNCKEERSYTVEDQENARLKDLCKKWN 483
Query: 347 RSCHSLHQ 354
C+S+H+
Sbjct: 484 SICNSIHR 491
>gi|15231233|ref|NP_190817.1| heat shock protein-like protein [Arabidopsis thaliana]
gi|4886278|emb|CAB43425.1| putative protein [Arabidopsis thaliana]
gi|44917467|gb|AAS49058.1| At3g52490 [Arabidopsis thaliana]
gi|332645430|gb|AEE78951.1| heat shock protein-like protein [Arabidopsis thaliana]
Length = 815
Score = 155 bits (393), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 114/361 (31%), Positives = 170/361 (47%), Gaps = 50/361 (13%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSS +K +E + + + TSS S + + P
Sbjct: 150 MREAGFSSPQVKTKVEQAVSLEICSKTTSS-----------SKPKEGKLLTP-------- 190
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQEL 120
V ED+ V + KKRRN VIVG+CL+ D +V M +V++ DVP+ L
Sbjct: 191 ---------VRNEDVMNVINNLVDKKRRNFVIVGECLATIDGVVKTVMEKVDKKDVPEVL 241
Query: 121 KQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQES 180
K I F+ + + +VE L EL+ V S VG G I+ GDL W V+ + +
Sbjct: 242 KDVKFITLSFS--SFGQPSRADVERKLEELETLVKS--CVGKGVILNLGDLNWFVESR-T 296
Query: 181 NNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPL 240
++ +N + C + H++ E+GKL R WLM A+ QTY++C+ QP L
Sbjct: 297 RGSSLYNNNDSYCV--VEHMIMEIGKLACGLVMGDHGRFWLMGLATSQTYVRCKSGQPSL 354
Query: 241 EIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCAE 300
E W L ++IP+ L L S V ES L ++ E +++ D +L+ C E
Sbjct: 355 ESLWCLTTLTIPATSNSLRL--SLVSESELEVKKS-----ENVSLQLQQSSD-QLSFCEE 406
Query: 301 CTSNYEEEAQLFKSGQKKL----LPPWLQPHSSSNANQ---KDELVEMRRKWNRSCHSLH 353
C+ +E EA+ KS + LP WLQ + N N D + E+ KWN C S+H
Sbjct: 407 CSVKFESEARFLKSSNSNVTTVALPAWLQQYKKENQNSHTDSDSIKELVVKWNSICDSIH 466
Query: 354 Q 354
+
Sbjct: 467 K 467
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 29/132 (21%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSA------------KKATWFLLQGNDTIGKRRL 525
L L+ VPWQ D + + + +++C+S K+ TW QG D K ++
Sbjct: 577 LCAALESKVPWQKDLVPELAKTVLKCRSGSSTRKINGNEDKKEDTWMFFQGLDVDAKEKI 636
Query: 526 ALSIAESVFGSTDLLFHIDM-----------------RKRNDGVSSHSEMLMGTLKNYEK 568
A +A+ VFGS D I + R R++ S+ E +
Sbjct: 637 ARELAKLVFGSQDSFVSICLSSFSSTRSDSAEDLRNKRLRDEQSLSYIERFSEAVSLDPN 696
Query: 569 LVVLVEDIDLAD 580
V+LVEDI+ AD
Sbjct: 697 RVILVEDIEQAD 708
>gi|356547789|ref|XP_003542291.1| PREDICTED: uncharacterized protein LOC100785122 [Glycine max]
Length = 1036
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 221/911 (24%), Positives = 375/911 (41%), Gaps = 167/911 (18%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHH--FINPNTFWQN 58
MREA FSS +K IE S + +SG G S +P +S ++NP Q
Sbjct: 148 MREASFSSPAVKATIEQSL--NAVPSTVNSGLGFRPSAVAPVNSAPGRNLYLNPRLQQQQ 205
Query: 59 HALFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQ 118
++Q +++K + ++ LR K+RN ++VG+ S +A + + + ++E ++ +
Sbjct: 206 QQGSTAQH----RGDEVKRILDILLRTKKRNPILVGE--SEPEAAIKEVIKKIENKELGE 259
Query: 119 -ELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVG----GGAIIYTGDLKW 173
HVI + K ++ L EL ++ T +G GG + GDLKW
Sbjct: 260 GAFANAHVIHLEKELPS----DKAQIPARLKELGDLIE--TRIGNSGCGGVFVDLGDLKW 313
Query: 174 TVDQ--QESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYM 231
V+Q N + + V+E+G+LVS + R+WL+ TA+ +TY+
Sbjct: 314 LVEQPVGFGIGGGLGNMQQLTLAEAGRAAVAEMGRLVSKFGEGGAGRLWLLGTATCETYL 373
Query: 232 KCQMRQPPLEIQWALQAVSIPS--------------GGLGLSLHSSSVHESRLTFSQNPS 277
+CQ+ P +E W LQAV I + G LG SL S S ++ T + P
Sbjct: 374 RCQVYHPTMENDWDLQAVPITTRASLPGIFPRLGTNGFLGTSLESLSPLKTLSTTTIPPL 433
Query: 278 QVWE--TKPFAIKEEEDHKLNCCAECTSNYEEE-AQLFKSGQ-----------KKLLPPW 323
+ P A+ CC +C + E+E A++ K + K LP W
Sbjct: 434 RRASENVDPAAVS-------ICCPQCMQSCEQEVAEMLKETEKSDTELKSEAAKPSLPQW 486
Query: 324 LQPHSSSN-------------ANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLY-NN 369
LQ ++ N K E+++KW+ SC SLH H + + L +
Sbjct: 487 LQNAKTNKDNGKVMDQAQNQEVNVKKRTQEIQKKWHDSCLSLHPKFHQLNVSTERLVPTS 546
Query: 370 QSLTGKSCSYASTYPWWPSQSSIFLDSN---SISFAESAMKPHNSSNSVAKFRRQQSCST 426
S+TG Y Q I L+ N S+ + + H S + V+ QQ T
Sbjct: 547 LSMTGL---YNMNLLGRQFQPKIPLNKNLGTSLQLSSNPTPIHPSEHVVSP---QQIPVT 600
Query: 427 IEFNFGNCTRKPQGVEPRLDSLKSNEGKEVKITLALGNSELSD------SAKLQRSD--- 477
+ G KP P + + + L+ +SE D S KL +D
Sbjct: 601 TDLVLGQT--KPADATP-----EETHKEGINDFLSCLSSESQDKFDELQSKKLLDADSFK 653
Query: 478 -LYKVLQENVPWQFDSIHSIVEVLVECK------SAKKATWFLLQGNDTIGKRRLALSIA 530
L K L E V WQ D+ ++ + +CK +K TW L G D IGK+++A +++
Sbjct: 654 KLLKGLTEKVWWQQDAASAVATTVTQCKLGNGKRRSKGDTWLLFVGPDRIGKKKMAAALS 713
Query: 531 ESVFGSTDLLFHIDMRKRNDGVSSHSEM--------LMGTLKNYEKLVVLVEDIDLADPQ 582
E V GST+ + ++R DG S + + ++ V+++EDID A+
Sbjct: 714 ELVSGSTNPIIIPLAQRRADGDSDAPHLRGKTALDRIAEAIRRNPLSVIVLEDIDEANIL 773
Query: 583 FIKILADGFETENF----------GKVIFVLTK-----------GDSSNYEERIEN-QDS 620
+ E F G V+F+LT S EE++EN
Sbjct: 774 LRGSIRRAMEQGRFPDSHGREISLGNVMFILTANWLPEDFRCLSNGSPLDEEKLENLAKG 833
Query: 621 VINMTLKVNERNQNFDHKRKAEW-EFANKTKSPRIDEKEDATSVTID-NVSSGNKKDFSR 678
+ + V +R KR+ W +++ PR KE + ++ D N ++ + +D
Sbjct: 834 GWQLRISVGKRAS----KRRPSWLSDEDRSLKPR---KEVNSGLSFDLNEAADDAEDGRG 886
Query: 679 QSSFNTLDLNMKADDED-DEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFN 737
S N+ D ++ +D + D G G LS + +L LD + + VF
Sbjct: 887 DGSLNSSDFTVEHEDNNHDVG----GSLSAVPREL--------------LDSVDDAIVF- 927
Query: 738 RNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSLFEKWLK 797
N + F + + + F + N V+ V+ L+++ G + + ++W+
Sbjct: 928 -KPLNFDLLRRNFSSSIIKRFSAVVG--NGVSIEVQGEALDKITSGV-WLGQTTIDEWMD 983
Query: 798 EVFQTSLEAVK 808
+ S +K
Sbjct: 984 KALVPSFHQLK 994
>gi|356533866|ref|XP_003535479.1| PREDICTED: chaperone protein ClpB1-like [Glycine max]
Length = 835
Score = 154 bits (388), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 122/372 (32%), Positives = 183/372 (49%), Gaps = 61/372 (16%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSS---GGGVFSSPCSPSSSEAHHFINPNTFWQ 57
MREAGFSST +K +E + + V SS GG F+ PN
Sbjct: 150 MREAGFSSTLVKTRVEQAVSMEVCSQKASSDRIAGG--------------SFMKPNL--- 192
Query: 58 NHALFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVP 117
+H V+ +D+ V +R R+NTVIVG+ ++ + + + M R E G+VP
Sbjct: 193 DH----------VNNDDVTSVLSELVR--RKNTVIVGEGVANAEGVAREVMERFEVGNVP 240
Query: 118 QELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQ 177
+L+ + + R + KEEVE L E++ V S VG G ++Y GDLKW +
Sbjct: 241 GDLRYVQFVSLPL--MCFRNISKEEVEQKLMEIRNLVKSY--VGRGVVLYLGDLKWLFEF 296
Query: 178 QESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQ 237
NF + + Y I +V E+ KLV C S S+R+WLM A+++ YMKC++
Sbjct: 297 WA-----NFCEQKRNYYCSIEQMVMELKKLV--CGSGESSRLWLMGIATFKAYMKCKICH 349
Query: 238 PPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQV-WETKPFAIKEEEDHKLN 296
P LE W L +IP G L LSL+ S + +Q S+V ++ F + + L
Sbjct: 350 PSLEAIWELHPFTIPVGSLSLSLNFHSDFQ-----AQERSKVFFKDVAFEDRTGVRNHLT 404
Query: 297 CCAECTSNYEEEAQ-LFKSGQKKL-----LPPWLQ----PHSSSNANQKDELVE-MRRKW 345
CC +C N+E+EAQ + KK+ LP WLQ S +Q+ +E + +KW
Sbjct: 405 CCRDCLINFEKEAQSITNCISKKVCTASSLPTWLQNCKEERSDIMEDQESSRLEYLCKKW 464
Query: 346 NRSCHSLHQGRH 357
N C+S+H+ RH
Sbjct: 465 NSLCNSIHR-RH 475
>gi|51536536|gb|AAU05506.1| At3g52490 [Arabidopsis thaliana]
Length = 837
Score = 152 bits (385), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 176/379 (46%), Gaps = 64/379 (16%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSS +K +E + + + TSS S + + P
Sbjct: 150 MREAGFSSPQVKTKVEQAVSLEICSKTTSS-----------SKPKEGKLLTP-------- 190
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQEL 120
V ED+ V + KKRRN VIVG+CL+ D +V M +V++ DVP+ L
Sbjct: 191 ---------VRNEDVMNVINNLVDKKRRNFVIVGECLATIDGVVKTVMEKVDKKDVPEVL 241
Query: 121 KQTHVIKFHF--------APVTLRFMKKE-EVEMNLTEL----KRKVDSL-----TSVGG 162
K I F A V + + E +VE L EL +RK++ L + VG
Sbjct: 242 KDVKFITLSFSSFGQPSRADVERKLEELEADVERKLEELEADVERKLEELETLVKSCVGK 301
Query: 163 GAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLM 222
G I+ GDL W V+ + + ++ +N + C + H++ E+GKL R WLM
Sbjct: 302 GVILNLGDLNWFVESR-TRGSSLYNNNDSYCV--VEHMIMEIGKLACGLVMGDHGRFWLM 358
Query: 223 ATASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWET 282
A+ QTY++C+ QP LE W L ++IP+ L L S V ES L ++ E
Sbjct: 359 GLATSQTYVRCKSGQPSLESLWCLTTLTIPATSNSLRL--SLVSESELEVKKS-----EN 411
Query: 283 KPFAIKEEEDHKLNCCAECTSNYEEEAQLFKSGQKKL----LPPWLQPHSSSNAN---QK 335
+++ D +L+ C EC+ +E EA+ KS + LP WLQ + N N
Sbjct: 412 VSLQLQQSSD-QLSFCEECSVKFESEARFLKSSNSNVTTVALPAWLQQYKKENQNSHTDS 470
Query: 336 DELVEMRRKWNRSCHSLHQ 354
D + E+ KWN C S+H+
Sbjct: 471 DSIKELVVKWNSICDSIHK 489
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 29/132 (21%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSA------------KKATWFLLQGNDTIGKRRL 525
L L+ VPWQ D + + + +++C+S K+ TW QG D K ++
Sbjct: 599 LCAALESKVPWQKDLVPELAKTVLKCRSGSSTRKINGNEDKKEDTWMFFQGLDVDAKEKI 658
Query: 526 ALSIAESVFGSTDLLFHIDM-----------------RKRNDGVSSHSEMLMGTLKNYEK 568
A +A+ VFGS D I + R R++ S+ E +
Sbjct: 659 ARELAKLVFGSQDSFVSICLSSFSSTRSDSAEDLRNKRLRDEQSLSYIERFSEAVSLDPN 718
Query: 569 LVVLVEDIDLAD 580
V+LVEDI+ AD
Sbjct: 719 RVILVEDIEQAD 730
>gi|357479855|ref|XP_003610213.1| Chaperone protein clpB [Medicago truncatula]
gi|355511268|gb|AES92410.1| Chaperone protein clpB [Medicago truncatula]
Length = 1025
Score = 152 bits (385), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 221/912 (24%), Positives = 381/912 (41%), Gaps = 193/912 (21%)
Query: 1 MREAGFSSTTIKNHIE---DSSASSVFQCYTSSGGGVFSSPCSPSSSEAHH-FINPNTFW 56
MREA FSS +K IE +S A S ++ G +P ++ + ++NP
Sbjct: 150 MREASFSSPAVKATIEQSLNSVAPSPVTVNSNPMMGFRPGMVTPGAAPTRNLYMNPRLQQ 209
Query: 57 QNHALFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDV 116
Q A S + +++K V E+ +R K+RN V+VG+ S +A + + + ++E ++
Sbjct: 210 QGGAAALS---GAHKGDEVKRVVEILMRTKKRNPVLVGE--SEPEAAIREVLKKIENKEL 264
Query: 117 PQEL-KQTHVIKFHFAPVTLRFMKKE------EVEMNLTELKRKVDS-LTSVG--GGAII 166
+ + H I +++KE ++ + + EL ++S L + G GG I
Sbjct: 265 GEGVFSNAHAI----------YLEKELPSDRGQIPVRIKELGDLIESRLGNSGSCGGVFI 314
Query: 167 YTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATAS 226
GDLKW V+Q N + + V+E+G+LV+ ++WL+ TA+
Sbjct: 315 NLGDLKWLVEQPVGFGLGNM--QQPALAEAGRAAVAEMGRLVAKFGEGGVGKLWLLGTAT 372
Query: 227 YQTYMKCQMRQPPLEIQWALQAVSI----PSGGLGLSLHSSSVHESRLTFSQNPSQVWET 282
+TY++CQ+ P +E W LQAV I P G+ L ++ + + L S +P +
Sbjct: 373 CETYLRCQVYHPSMENDWDLQAVPITTRSPLPGMFPRLGTNGILGTTLE-SLSPLKTLTP 431
Query: 283 KPFA--------IKEEEDHKLNCCAECTSNYEEE-AQLFKSGQK-----------KLLPP 322
P + CC +C + E+E A + K +K LP
Sbjct: 432 TPITPLTRASENVDPAAAAAPTCCPQCMRSCEQEIADMLKETEKSDSELKPDATRPPLPQ 491
Query: 323 WLQPHSSSN---------------ANQKDELVEMRRKWNRSCHSLHQGRHTQ-------- 359
WLQ ++N N K E+++KW+ SC +LH H Q
Sbjct: 492 WLQNARTNNDNAKVMDQAQSNGQEGNVKKRTQEIQKKWHDSCLNLHPKFHQQNVSTERIV 551
Query: 360 -SQFS-SNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSISFAESAMKPHNSSNSVAK 417
+ FS +NLY N +L G+ P S+ L S I +S H +S
Sbjct: 552 PTPFSMTNLY-NVNLLGRQFQ-PKVQPNKNLGCSLQLSSIPIPIQQSE---HTASP---- 602
Query: 418 FRRQQSCSTIEFNFGNCTRKPQGVEP------RLDSLKSNEGKEVKITL-ALGNSELSDS 470
++S T E G KP P R++ S+ E + L + +L D+
Sbjct: 603 ---RKSTVTTELVLGQT--KPSDTIPEESHRERINDFLSSLSSESQDKFDELHSKKLFDT 657
Query: 471 AKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIA 530
+R L K L E V WQ D+ +I + +CK G D IGK+R+A +++
Sbjct: 658 DSFKR--LLKTLTEKVWWQQDAASAIATAVTQCK----------LGPDRIGKKRMAAALS 705
Query: 531 ESVFGSTDLLFHIDMRKRNDGVSSHS-------EMLMGTLKNYEKLVVLVEDIDLADPQF 583
E V GS ++ + R+ + ++H + ++ T++ V+++EDID A+
Sbjct: 706 ELVSGSNPIVISLAQRRGDGDSNAHQFRGKTVLDRIVETIRRNPHSVIMLEDIDEANTLL 765
Query: 584 IKILADGFETENF----------GKVIFVLTKG---DSSNY--------EERIENQDS-- 620
+ E F G V+F+LT + +Y +E++EN S
Sbjct: 766 RGNIKRAMEQGRFPDSHGREISLGNVMFILTSNWLPEDLSYLSNGAPLDDEKLENLASGG 825
Query: 621 ---VINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFS 677
+++T KV+ KR+ W +N+ +S + +K+ +
Sbjct: 826 WQLRLSVTKKVS--------KRRPSW-LSNEERSLK------------------PRKELN 858
Query: 678 RQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITN------PALSNGFLDLIQ 731
SF DLN AD E+D + S SSD T ++ N P+ LD +
Sbjct: 859 LGLSF---DLNEAADVEEDRADG-----SHNSSDFTVDHEENNHNGGSPSKPRELLDSVD 910
Query: 732 NRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSL 791
+ VF N I F A + + F + N ++ V+E L+++ G + +
Sbjct: 911 DAIVF--KPLNFDLIRQNFSASIAKRFSAVVG--NGISIEVQEEALDKITSGV-WLGQTT 965
Query: 792 FEKWLKEVFQTS 803
++W+++V S
Sbjct: 966 IDEWMEKVLVPS 977
>gi|449464332|ref|XP_004149883.1| PREDICTED: uncharacterized protein LOC101218882 [Cucumis sativus]
Length = 1029
Score = 150 bits (379), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 233/912 (25%), Positives = 381/912 (41%), Gaps = 181/912 (19%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREA FSS +K IE S +S SS G+ SS SPS + + ++NP F Q
Sbjct: 148 MREASFSSPAVKGIIE-RSLNSSASVVNSSPIGLRSSHSSPSPNRSL-YLNPR-FHQG-- 202
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQ-E 119
S + +E++K + ++ R +RN ++VGD S TDA++ +F R+ + ++ +
Sbjct: 203 --SVNQLGRPREEEVKRIVDILRRPTKRNPIVVGD--SETDAMLEEFFRRINKKELSEGS 258
Query: 120 LKQTHVIKFH--FAPVTLRFMKKEEVEMNLTELKRKVDS--LTSVGGGAIIYTGDLKWTV 175
L+ +I+ FA +E++ L EL+ V S S G I+ G+L+W
Sbjct: 259 LENAEIIRLEKEFA------SDREQIPTKLDELEDLVASQLAKSSSGSIILDLGNLEWLF 312
Query: 176 DQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQM 235
DQ S+ + G A V ++GKL++ N R+WL+ TA+ +T+++CQ+
Sbjct: 313 DQPASSVSEA--GRAA---------VQKIGKLLTRFNG----RLWLIGTATCETFLRCQI 357
Query: 236 RQPPLEIQWALQAVSI----PSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKEEE 291
P +E W L V + P GL + + S + S +P + + T P + E
Sbjct: 358 YHPSIESDWDLHVVPVVAKAPRSGLYPRFGTKEILGSPIE-SLSPLKFFPTPPISQLRNE 416
Query: 292 DHKLN------CCAECTSNYE--------EEAQLFKSGQK-----KLLPPWLQP---HSS 329
LN CC++C YE EE++ SG K LP WLQ HS
Sbjct: 417 SESLNYGSRITCCSQCMQKYEQELHKLINEESEKSSSGVKTDSNSSPLPHWLQKAKDHSP 476
Query: 330 ------SNANQKDELV------EMRRKWNRSCHSLHQGRHTQSQFSSN-----------L 366
S N+ EL+ E+++KWN +C +H H FSS L
Sbjct: 477 NAESVDSKQNKDTELMVKQRTQELQKKWNTTCLQIHPNFHQSKIFSSTGNMLTGISTMGL 536
Query: 367 YNNQSLTGKSC--------SYASTYPW----WPSQSSIFLDSNSISFAESAMKPHNSSNS 414
YN L + C S T P+Q S D NSI + S N
Sbjct: 537 YNQNLLKCQPCQPRLELNKSLGRTLQLNMNPQPNQPS---DHNSIRTDLILGQEKFSGNI 593
Query: 415 VAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQ 474
+ R+ C TIEF N + + SL K + IT DS K
Sbjct: 594 PEQTRK--DC-TIEFLGQNHNSS----KSEMKSLDIQSAKLLGITDV-------DSYK-- 637
Query: 475 RSDLYKVLQENVPWQFDSIHSIVEVLVECK---------SAKKATWFLLQGNDTIGKRRL 525
+ KVL V WQ D+ ++ + + K +K W L G D +GKR++
Sbjct: 638 --KILKVLMGKVWWQRDAASTVANTITQRKLGNRKRQGAGSKGDIWLLFAGPDKVGKRKM 695
Query: 526 ALSIAESVFGSTDLLFHIDMRKRNDGVSSH-------SEMLMGTLKNYEKLVVLVEDIDL 578
A +I+E V GS + + ++ G+ ++ ++ KN ++VL E+ID
Sbjct: 696 ASAISELVSGSIMVTICLGSQRNGRGLDNNFRGRTPLDQIAEAVRKNPFSVIVL-ENIDE 754
Query: 579 ADPQFIKILADGFETE----------NFGKVIFVLTK----------GDSSNYEER--IE 616
AD F L E+ + G +IF+LT D +++ E+
Sbjct: 755 ADVLFRGSLKRAIESGRLIDSYGREISLGNIIFILTTVWLPDDLKWFSDHNSFGEKELAT 814
Query: 617 NQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDF 676
+ L ++E+ KR+ W N+ + + K + D + N +D
Sbjct: 815 LAGESWQLRLSLSEKQS----KRRGNW-LCNEERFTKT-RKGTNPGLFFDLNEAANAEDD 868
Query: 677 SRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVF 736
+ S N+ DL + D ED+ G LS + S +PAL+ D++ + +F
Sbjct: 869 TPDGSHNSSDLTI--DHEDEYG------LSKMES-----TTASPALTE-LQDIVDDAIIF 914
Query: 737 NRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSLFEKWL 796
N IT + E F I + ++ ++++ L+++L G + N+ E+W
Sbjct: 915 --KPVNFNHITQDIKTSINEKFFTIIGVEG-ISIELQDQALQKILAGV-WLSNTSLEEWA 970
Query: 797 KEVFQTSLEAVK 808
++ S +K
Sbjct: 971 EKALVPSFNHLK 982
>gi|449529860|ref|XP_004171916.1| PREDICTED: uncharacterized protein LOC101223687 [Cucumis sativus]
Length = 1029
Score = 149 bits (377), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 232/912 (25%), Positives = 380/912 (41%), Gaps = 181/912 (19%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREA FSS +K IE S +S SS G+ SS SPS + + ++NP F Q
Sbjct: 148 MREASFSSPAVKGIIE-RSLNSSASVVNSSPIGLRSSHSSPSPNRSL-YLNPR-FHQG-- 202
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQ-E 119
S + +E++K + ++ R +RN ++VGD S TDA++ +F R+ + ++ +
Sbjct: 203 --SVNQLGKPREEEVKRIVDILRRPTKRNPIVVGD--SETDAMLEEFFRRINKKELSEGS 258
Query: 120 LKQTHVIKFH--FAPVTLRFMKKEEVEMNLTELKRKVDS--LTSVGGGAIIYTGDLKWTV 175
L+ +I+ FA +E++ L EL+ V S S G I+ G+L+W
Sbjct: 259 LENAEIIRLEKEFA------SDREQIPTKLDELEDLVASQLAKSSSGSIILDLGNLEWLF 312
Query: 176 DQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQM 235
DQ S+ + G A V ++GKL++ N R+WL+ TA+ +T+++CQ+
Sbjct: 313 DQPASSVSEA--GRAA---------VQKIGKLLTRFNG----RLWLIGTATCETFLRCQI 357
Query: 236 RQPPLEIQWALQAVSI----PSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKEEE 291
P +E W L V + P GL + + S + S +P + + T P + E
Sbjct: 358 YHPSIESDWDLHVVPVVAKAPRSGLYPRFGTKEILGSPIE-SLSPLKFFPTPPISQLRNE 416
Query: 292 DHKLN------CCAECTSNYE--------EEAQLFKSGQK-----KLLPPWLQP---HSS 329
LN CC++C YE EE++ G K LP WLQ HS
Sbjct: 417 SESLNYGSRLTCCSQCMQKYEQELHKLINEESEKSSPGVKTDSNSSPLPHWLQKAKDHSP 476
Query: 330 ------SNANQKDELV------EMRRKWNRSCHSLHQGRHTQSQFSSN-----------L 366
S N+ EL+ E+++KWN +C +H H FSS L
Sbjct: 477 NAESVDSKQNKDTELMVKQRTQELQKKWNTTCLQIHPNFHQSKIFSSTGNMLTGISTMGL 536
Query: 367 YNNQSLTGKSC--------SYASTYPW----WPSQSSIFLDSNSISFAESAMKPHNSSNS 414
YN L + C S T P+Q S D NSI + S N
Sbjct: 537 YNQNLLKCQPCQPRLELNKSLGRTLQLNMNPQPNQPS---DHNSIRTDLILGQEKFSGNI 593
Query: 415 VAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQ 474
+ R+ C TIEF N + + SL K + IT DS K
Sbjct: 594 PEQTRK--DC-TIEFLGQNHNSS----KSEMKSLDIQSAKLLGITDV-------DSYK-- 637
Query: 475 RSDLYKVLQENVPWQFDSIHSIVEVLVECK---------SAKKATWFLLQGNDTIGKRRL 525
+ KVL V WQ D+ ++ + + K +K W L G D +GKR++
Sbjct: 638 --KILKVLMGKVWWQRDAASTVANTITQRKLGNRKRQGAGSKGDIWLLFAGPDKVGKRKM 695
Query: 526 ALSIAESVFGSTDLLFHIDMRKRNDGVSSH-------SEMLMGTLKNYEKLVVLVEDIDL 578
A +I+E V GS + + ++ G+ ++ ++ KN ++VL E+ID
Sbjct: 696 ASAISELVSGSIMVTICLGSQRNGRGLDNNFRGRTPLDQIAEAVRKNPFSVIVL-ENIDE 754
Query: 579 ADPQFIKILADGFETE----------NFGKVIFVLTK----------GDSSNYEER--IE 616
AD F L E+ + G +IF+LT D +++ E+
Sbjct: 755 ADVLFRGSLKRAIESGRLIDSYGREISLGNIIFILTTVWLPDDLKWFSDHNSFGEKELAT 814
Query: 617 NQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDF 676
+ L ++E+ KR+ W N+ + + K + D + N +D
Sbjct: 815 LAGESWQLRLSLSEKQS----KRRGNW-LCNEERFTKT-RKGTNPGLLFDLNEAANAEDD 868
Query: 677 SRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVF 736
+ S N+ DL + D ED+ G LS + S +PAL+ D++ + +F
Sbjct: 869 TPDGSHNSSDLTI--DHEDEYG------LSKMES-----TTASPALTE-LQDIVDDAIIF 914
Query: 737 NRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSLFEKWL 796
N IT + E F I + ++ ++++ L+++L G + N+ E+W
Sbjct: 915 --KPVNFNHITQDIKTSINEKFFTIIGVEG-ISIELQDQALQKILAGV-WLSNTSLEEWA 970
Query: 797 KEVFQTSLEAVK 808
++ S +K
Sbjct: 971 EKALVPSFNHLK 982
>gi|356562493|ref|XP_003549505.1| PREDICTED: uncharacterized protein LOC100809965 [Glycine max]
Length = 1034
Score = 147 bits (371), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 174/686 (25%), Positives = 282/686 (41%), Gaps = 113/686 (16%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHH--FINPNTFWQN 58
MREA FSS +K IE S + +SG G S +P +S ++NP Q
Sbjct: 148 MREASFSSPAVKATIEQSL--NAVPATVNSGLGFRPSAVAPVNSAPGRNLYLNPRLQQQG 205
Query: 59 HALFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQ 118
A A +++K + ++ R K+RN ++VG+ S +A + + + ++E ++ +
Sbjct: 206 SA-------AQHRGDEVKRILDILHRTKKRNPILVGE--SEPEAAIKEVIKKIENKELGE 256
Query: 119 E-LKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLT--SVGGGAIIYTGDLKWTV 175
HVI + K ++ L EL ++S S GG + GDLKW V
Sbjct: 257 GGFANAHVIHLEKELPS----DKAQIPARLQELGDLIESRIGNSGCGGVFVDLGDLKWLV 312
Query: 176 DQ--QESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKC 233
+Q N + + V+E+G+LVS + R+WL+ TA+ +TY++C
Sbjct: 313 EQPVGFGVGGGLGNMQQLTLAEAGRAAVAEIGRLVSKFGEGGAGRLWLLGTATCETYLRC 372
Query: 234 QMRQPPLEIQWALQAVSI----PSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKE 289
Q+ P +E W LQAV I P G+ L ++ + + L S P + T
Sbjct: 373 QVYHPTMENDWDLQAVPITSRAPLPGIFPRLGTNGILGTSLE-SLLPLKTLSTTTIPSLR 431
Query: 290 EEDHKLN------CCAECTSNYEEEA------------QLFKSGQKKLLPPWLQPHSSSN 331
++ CC +C + E+E +L K LP WLQ ++N
Sbjct: 432 RASENIDPSAVSICCPQCMQSCEQEVAEMLEETKKSDTELKSEAAKPSLPQWLQNAKTNN 491
Query: 332 -------------ANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQ-SLTGKSC 377
N K E+++KW+ SC SLH H + + L S+TG
Sbjct: 492 DNGKVMDQAQNQEVNVKKRTKEIQKKWHDSCLSLHPKFHQLNVSTETLVPTPLSMTGL-- 549
Query: 378 SYASTYPWWPSQSSIFLDSN---SISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNC 434
Y Q I + N S+ + + H ++V+ +Q T + G
Sbjct: 550 -YNMNLLGRQFQPKILRNKNLGTSLQLSSNPTPIHPPEHAVSP---KQMPVTTDLVLGQT 605
Query: 435 TRKPQGVEPRLDSLKSNEGKE-VKITLALGNSELSD------SAKLQRSD----LYKVLQ 483
KP D++ KE + L+ +SE D S KL +D L K L
Sbjct: 606 --KPA------DAVPEETHKEGINDFLSCLSSESQDKFDELQSKKLIDADSFKKLLKGLT 657
Query: 484 ENVPWQFDSIHSIVEVLVECK------SAKKATWFLLQGNDTIGKRRLALSIAESVFGST 537
E V WQ D+ ++ + +CK +K TW L G D IGK+++A +++E GS
Sbjct: 658 EKVWWQQDAASAVASTVTQCKLGNGKRRSKGDTWLLFVGPDRIGKKKMAAALSELASGSN 717
Query: 538 DLLFHIDMRKRNDGVSSHSEMLMG---------TLKNYEKLVVLVEDIDLADPQFIKILA 588
++ + R R D S + L G ++ V+++EDID A+ +
Sbjct: 718 PIIIPLAQR-RGDAGDSDAPHLRGKTALDRIAEAIRRNPLSVIVLEDIDEANILLRGSIR 776
Query: 589 DGFETENF----------GKVIFVLT 604
E F G V+F+LT
Sbjct: 777 RAMEQGRFPDSHGREISLGNVMFILT 802
>gi|15242850|ref|NP_200579.1| heat shock protein-like protein [Arabidopsis thaliana]
gi|9759268|dbj|BAB09589.1| 101 kDa heat shock protein; HSP101-like protein [Arabidopsis
thaliana]
gi|332009558|gb|AED96941.1| heat shock protein-like protein [Arabidopsis thaliana]
Length = 990
Score = 145 bits (367), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 198/784 (25%), Positives = 324/784 (41%), Gaps = 160/784 (20%)
Query: 1 MREAGFSSTTIKNHIEDS-----------SASSVFQCYTSSGGGVFSSPCSPSSSEAHHF 49
MREA FSS +K IE S S SSV + GGG + + +
Sbjct: 147 MREASFSSPAVKATIEQSLNNSVTPTPIPSVSSVGLNFRPGGGGPMTR---------NSY 197
Query: 50 INPNTFWQNHALFSSQKPASVSK-EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFM 108
+NP QN + S VSK +D++ V ++ R K++N V+VGD S ++ + +
Sbjct: 198 LNPR-LQQNASSVQS----GVSKNDDVERVMDILGRAKKKNPVLVGD--SEPGRVIREIL 250
Query: 109 GRVERGDVPQ-ELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIY 167
++E G+V +K + V+ KE + T LK +S GGG I+
Sbjct: 251 KKIEVGEVGNLAVKNSKVVSLEEISSDKALRIKELDGLLQTRLK---NSDPIGGGGVILD 307
Query: 168 TGDLKWTVDQQESNNN-NNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATAS 226
GDLKW V+Q S EI V E+ +L+ R+W + TA+
Sbjct: 308 LGDLKWLVEQPSSTQPPATVAVEIGRTA------VVELRRLLEKFEG----RLWFIGTAT 357
Query: 227 YQTYMKCQMRQPPLEIQWALQAVSI----PSGGLGLSLHSSSVHESRLTFSQNPSQVWET 282
+TY++CQ+ P +E W LQAVS+ P+ G+ F + + +
Sbjct: 358 CETYLRCQVYHPSVETDWDLQAVSVAAKAPASGV---------------FPRLANNLESF 402
Query: 283 KPFAIKEEEDHKLNCCAECTSNYEEEAQLFKS----------GQKKLLPPWLQPHSSSNA 332
P + L CC +C +YE E S Q K LP WL +
Sbjct: 403 TPLKSFVPANRTLKCCPQCLQSYERELAEIDSVSSPEVKSEVAQPKQLPQWLLKAKPVDR 462
Query: 333 NQKDELVEMRRKWNRSCHSLHQGRH---------------TQSQFSSNLYNNQSLTGKSC 377
+ ++ E+++KWN +C LH H T S +S N+ Q L K
Sbjct: 463 LPQAKIEEVQKKWNDACVRLHPSFHNKNERIVPIPVPITLTTSPYSPNMLLRQPLQPK-- 520
Query: 378 SYASTYPWWPSQSSIFLDSNSISFAESAMK------PHNSSNSVAKFRRQQSCSTIEF-N 430
P + + L S AE A K P + + + + ++ +
Sbjct: 521 ----LQPNRELRERVHLKPMSPLVAEQAKKKSPPGSPVQTDLVLGRAEDSEKAGDVQVRD 576
Query: 431 FGNCTRKPQGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQF 490
F C +S+++N V LGNS D K L K + E V WQ
Sbjct: 577 FLGCISS--------ESVQNNNNISVLQKENLGNSLDIDLFK----KLLKGMTEKVWWQN 624
Query: 491 DSIHSIVEVLVECK---------SAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLF 541
D+ ++ + +CK +K W L G D +GKR++ +++ V+G+ ++
Sbjct: 625 DAAAAVAATVSQCKLGNGKRRGVLSKGDVWLLFSGPDRVGKRKMVSALSSLVYGTNPIMI 684
Query: 542 HIDMRK-RNDGVSSHS-----EMLMGTLKNYEKLVVLVEDIDLADPQF---IKILAD--- 589
+ R+ DG SS + + T+K V+L+EDID AD IK D
Sbjct: 685 QLGSRQDAGDGNSSFRGKTALDKIAETVKRSPFSVILLEDIDEADMLVRGSIKQAMDRGR 744
Query: 590 -----GFETENFGKVIFVLT-----KGDSSNYEERIENQDSVINMT-----LKVNERNQN 634
G E + G VIFV+T G +++ ++N+ + ++ L++ R +
Sbjct: 745 IRDSHGREI-SLGNVIFVMTASWHFAGTKTSF---LDNEAKLRDLASESWRLRLCMR-EK 799
Query: 635 FDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDE 694
F KR+A W +++ + + +KE + ++ D + + D S NT DL +D+
Sbjct: 800 FG-KRRASWLCSDEERLTK-PKKEHGSGLSFDLNQAADTDD----GSHNTSDLTTD-NDQ 852
Query: 695 DDEG 698
D++G
Sbjct: 853 DEQG 856
>gi|224113403|ref|XP_002316485.1| predicted protein [Populus trichocarpa]
gi|222865525|gb|EEF02656.1| predicted protein [Populus trichocarpa]
Length = 854
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 105/323 (32%), Positives = 160/323 (49%), Gaps = 42/323 (13%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTF----- 55
M+EAGFSST +KN +E + + + C SS + C P I P
Sbjct: 149 MKEAGFSSTQVKNKVEQTVSLEI--CPQSS----LTVSCQPK-----EIIKPQVLSASVS 197
Query: 56 ----WQNHALFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRV 111
+ + S+ V +D+ V + KKR NT+I G+CL+ +++V M +
Sbjct: 198 QSLPFSQFGIIHSKPLDQVRNDDVMSVLNTLVGKKR-NTIITGECLATAESVVRGVMDKF 256
Query: 112 ERGDVPQELKQTHVIKFHFAPV-TLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGD 170
ERG+V +L+ ++F P+ + R + KE++E L EL+ V S S G ++Y GD
Sbjct: 257 ERGEVSGDLRS---VRFKNLPLFSFRSLSKEDLEQKLMELRCIVKSYISTG--VVLYLGD 311
Query: 171 LKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTY 230
LKW D S + + S Y +H++ E+ +LV + + R+WLM A++QTY
Sbjct: 312 LKWIADFWSS-----YGEQRRSYYCTADHIILELKRLVH--GFSETGRLWLMGIATFQTY 364
Query: 231 MKCQMRQPPLEIQWALQAVSIPSGGLGLSLH---SSSVHESRLTFSQNPSQVWETKPFAI 287
MKC+ P LE W L V+IP G L LSL S H+SR S N S W P +
Sbjct: 365 MKCKAGHPSLETMWELNPVTIPVGSLNLSLKLDSDSQSHQSRSKASLNGSS-W---PL-L 419
Query: 288 KEEEDHKLNCCAECTSNYEEEAQ 310
+ D+ L C + + N+ +EAQ
Sbjct: 420 ESRVDNHLTCWTDYSVNFNKEAQ 442
Score = 47.4 bits (111), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 53/134 (39%), Gaps = 30/134 (22%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-------------KKATWFLLQGNDTIGKR 523
+L L++ VPWQ D I I ++EC+S K TW G D GK
Sbjct: 609 NLRSGLEKKVPWQKDIIPEIATTILECRSGMRKRKGKLNHIEDKAETWLFFLGVDFEGKE 668
Query: 524 RLALSIAESVFGSTDLLFHIDM-----------------RKRNDGVSSHSEMLMGTLKNY 566
++A +A+ VFGS I + R R++ S+ E L L
Sbjct: 669 KIARELAKLVFGSQSNFVSIGLSNFSSSRADSIEESKNKRARDELGCSYLERLGLALNEN 728
Query: 567 EKLVVLVEDIDLAD 580
V +ED+D D
Sbjct: 729 PHRVFFMEDVDQVD 742
>gi|413922132|gb|AFW62064.1| hypothetical protein ZEAMMB73_199434 [Zea mays]
Length = 1028
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 204/892 (22%), Positives = 354/892 (39%), Gaps = 162/892 (18%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREA FSS +K IE S S S+ ++P +PS S + P + N
Sbjct: 162 MREASFSSAAVKTTIEQSLPSPSAAAVVSTPTVAATTPVAPSPSP-FPRVGPTNAYINPR 220
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQEL 120
L ++ ++D++ V +V L+ RRN V+VGD + DA++ + + R+ D L
Sbjct: 221 LAAAAG-VGGGRDDVRKVLDVMLKPARRNPVLVGD--AGPDAVLREAVRRIPTSDS-HAL 276
Query: 121 KQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQES 180
V+ A + K + + +L V + + G ++ GDLKW VD
Sbjct: 277 AGAKVLPLE-ADLAKLAGDKAAMAARIGDLGAMVQRILADHGAVVLDLGDLKWLVD---- 331
Query: 181 NNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPL 240
G A+ +VSE+ +L+ S +VW + TA+ TY++C++ P +
Sbjct: 332 -------GPAAAASEGGKAVVSEMARLLGPFGS---RKVWAVGTAACATYLRCKVYHPTM 381
Query: 241 EIQWALQAVSIP-----------SGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIK- 288
E W LQAV I GG+G+ +S + L+ + P V P A++
Sbjct: 382 EADWDLQAVPIARSAPLAGAALRPGGIGILGNSVGM----LSPALRPMPV---TPTALRW 434
Query: 289 ---EEEDHKLNC----CAECTSNYEEE-AQLFKSGQKKL----------LPPWLQPHSSS 330
DH L C C +Y+ E A+L ++K LP W+QP
Sbjct: 435 PPGAGSDHPLKAKPAMCLLCKGSYDRELAKLLAEQKEKPASSPEAAKPGLPHWMQPSRDQ 494
Query: 331 NANQKDELV------EMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYP 384
++ EL E+ +KW+ +C H R S L + A P
Sbjct: 495 PQTKEQELKQNEAAEELEKKWHETCARTHSNRTVAPALSLPLA----------ALAPRPP 544
Query: 385 WWPSQSSIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPR 444
P ++ + +P + S + R+ S ++ + P +
Sbjct: 545 VEPKLQPASGGVPTLKMNTNWKEPEGTPTS--ELRKSPPGSPVKTDLALGPLDPDATMEK 602
Query: 445 LDSLKSNEG----KEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVL 500
EG ++ KI + +SD +R L K L E V WQ D+ +I +
Sbjct: 603 DQKENYTEGLTAMQKAKI------AGISDIESFKR--LLKALTEKVSWQSDAASAIAAAV 654
Query: 501 VECKSA---------KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLL--FHIDMRKRN 549
++C++A + W L G D GKR++A +++E + + ++ F D R
Sbjct: 655 IQCRTASGKRRNIGTRGDIWLLFVGPDQAGKRKMANALSEQMVNAEPVVINFGGDSRWGK 714
Query: 550 DGVSSHSEMLMG---------TLKNYEKLVVLVEDIDLADPQFIKILADGFETE------ 594
DG + G ++ V+++E ID D + +T
Sbjct: 715 DGNGRPNPGFWGKTSLDRVTEAVRQNPCSVIVLEGIDQVDAVVRGKINRAMDTGRLPDSR 774
Query: 595 ----NFGKVIFVLT-----------KGDSSNYEE--RIENQDSVINMTLKVNERNQNFDH 637
+ G VIFVLT K D+ +E +E S + L + ++ Q
Sbjct: 775 GREVSLGNVIFVLTTDWLPEELRRPKFDTPLQDEGKMLEAAHSDWQLELSIGDKQQ---L 831
Query: 638 KRKAEWEFANKTKSPRID-EKEDATSVTID-NVSSGNKKDFSRQSSFNTLDLNMKADDED 695
K +A+W N + ++ E +++D N++ G D + S N+ DL++
Sbjct: 832 KHQADW-LCNDARPAKVARELSGGHGLSLDLNLAVGASDDT--EGSRNSSDLSV------ 882
Query: 696 DEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRN--SSNDGKITGLFLAK 753
E EQ+ G ++ + PA + L+L+ + VF + +T AK
Sbjct: 883 -EQEQEKGHVA--------VKCSTPAPDSDLLNLVDDAIVFRPVDFAPFRKAVTDCVSAK 933
Query: 754 MKESFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSLFEKWLKEVFQTSLE 805
FD + + + +F V+E ++ + S + + E W +EV S+E
Sbjct: 934 ----FDSVTRGSS--SFRVDEDAVDR-MAASVWLTDEKLEDWAEEVLTPSIE 978
>gi|356577524|ref|XP_003556874.1| PREDICTED: uncharacterized protein LOC100775479 [Glycine max]
Length = 828
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 112/369 (30%), Positives = 169/369 (45%), Gaps = 66/369 (17%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSS +K +E + + V CS H NT +
Sbjct: 151 MREAGFSSALVKTRVEQAVSMEV---------------CS-----QHQASKENTTTKLQV 190
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQEL 120
L +D+ V + KRRNTVIVG+ L+ + + M R+E G V EL
Sbjct: 191 L----------GDDVTSVLSELV-SKRRNTVIVGESLASAEGVARGVMERLETGSVQGEL 239
Query: 121 KQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQES 180
+ + V+ R + KEEVE L EL+ V S VG G I+Y GDLKW + S
Sbjct: 240 RFVQFVSLPL--VSFRNISKEEVERKLVELRNLVKS--HVGRGLILYLGDLKWLFEFWSS 295
Query: 181 NNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPL 240
N Y + H+V E+ KL+S + ++R+WLM A+++TY+K + P L
Sbjct: 296 YCEQRTNY-----YCSVEHMVMELKKLIS--GNRENSRLWLMGIATFRTYIKGKACHPSL 348
Query: 241 EIQWALQAVSIPSGGLGLSLHSSS---VHE-SRLTFSQNPSQVWETKPFAIKEEEDHKLN 296
E W L ++P G L L+L+ S V E S++TF + + F + + L
Sbjct: 349 ETIWDLHPFTVPVGSLSLALNFDSDFHVQERSKVTF--------KDESFEERAKVRKYLT 400
Query: 297 CCAECTSNYEEEAQ-------LFKSGQKKLLPPWLQPHSSSNANQKDE-----LVEMRRK 344
CC +C+ N+E+EA+ + K LP WL+ + + ++ L ++ +K
Sbjct: 401 CCRDCSLNFEKEAKSIASSFTISKRDCTTSLPTWLKNCKAERSRMMEDQENAKLWDICKK 460
Query: 345 WNRSCHSLH 353
WN C S H
Sbjct: 461 WNSFCSSAH 469
>gi|242078685|ref|XP_002444111.1| hypothetical protein SORBIDRAFT_07g008090 [Sorghum bicolor]
gi|241940461|gb|EES13606.1| hypothetical protein SORBIDRAFT_07g008090 [Sorghum bicolor]
Length = 1051
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 213/954 (22%), Positives = 368/954 (38%), Gaps = 172/954 (18%)
Query: 1 MREAGFSSTTIKNHIEDSSASS-------VFQCYTSSGGGVFSSPCSPSSSEAHHFINP- 52
MREA FSS +K IE S AS ++ S P A+ +INP
Sbjct: 161 MREASFSSAAVKTTIEQSLASPSPPPAAVSTATVAATTPLAPSPSPLPRVGTANAYINPR 220
Query: 53 ----------NTFWQ-----------NHALFSSQKPASVSK--EDIKLVFEVFLRKKRRN 89
N + ++A + + A+V +D + V +V L+ RRN
Sbjct: 221 LAAAAGGGGDNAYINPRLAAVAGGAGDNAYINPRLAAAVGGGGDDARKVLDVMLKPARRN 280
Query: 90 TVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTE 149
V+VGD + DA++ + + R+ P L V+ L K + + +
Sbjct: 281 PVLVGD--AGPDAVLKEVVRRIPMAGSPA-LAGAKVLPLEGDLAKL-ACDKAAMAARIGD 336
Query: 150 LKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVS 209
L V L + G ++ GDLKW VD G A+ +VSE+ +L+
Sbjct: 337 LGASVQRLLADHGAVVLDLGDLKWLVD-----------GPAAAASEAGKAVVSEMARLLR 385
Query: 210 DCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSI----PSGGLGLSLHSSSV 265
S +VW + TA+ TY++C++ P +E +W LQAV I P G GL + +
Sbjct: 386 RFGSG---KVWAVGTAACATYLRCKVYHPTMEAEWDLQAVPIARSAPLAGAGLRSGGTGI 442
Query: 266 HESRLTFSQNPSQVWETKPFAIK----EEEDHKL----NCCAECTSNYEEEAQLFKSGQK 317
+ + + P A++ DH L C C +Y+ E + QK
Sbjct: 443 LGNSVGMLSPTLRPMPLTPTALRWPPGAGSDHPLMAKPTMCMLCKGSYDRELAKLAAEQK 502
Query: 318 KL-----------LPPWLQPHSSSNANQKDELV------EMRRKWNRSCHSLHQGRHTQS 360
+ LP W+QP S ++ EL E+ +KW +C H R
Sbjct: 503 EKPTSCPEAVKPGLPHWMQPSSDQTQTKEQELKRKEAAEELEKKWRETCACTHGNRAGAP 562
Query: 361 QFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSISFAESAMKPHNSSNSVAKFRR 420
S L + AS P P ++ S KP + S + R+
Sbjct: 563 AVSLPL----------AALASRPPVEPKLQLARGGVPTLKMNTSWDKPEGTPTS--ELRK 610
Query: 421 QQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEG----KEVKITLALGNSELSDSAKLQRS 476
S ++ + P + EG ++ KI + +SD +R
Sbjct: 611 SPPGSPVKTDLALGPLDPGATVEKDQKENYTEGLTAMQKAKI------AGISDIESFKR- 663
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA---------KKATWFLLQGNDTIGKRRLAL 527
L KVL E V WQ D+ +I V+++C++ + W L G D GKR++A
Sbjct: 664 -LLKVLTEKVSWQSDAASAIAAVVIQCRTGSGKRRNIGTRGDIWLLFVGPDQAGKRKMAN 722
Query: 528 SIAESVFGSTDLL--FHIDMRKRNDGVS-----SHSEMLMGTLKNYEKLVVLVEDIDLAD 580
+++E + + ++ F D R DG + + + + ++ V+++E ID D
Sbjct: 723 ALSELMVNAQPVVINFGGDSRLGKDGNAGFWGKTSLDRVTEAVRQNPCSVIVLEGIDQVD 782
Query: 581 PQFIKILADGFETE----------NFGKVIFVLTKG------DSSNYEERIENQDSVI-- 622
+ ET + G V+FVLT +E ++++ +
Sbjct: 783 VVVRGKIKRAMETGRLPDSRGREVSLGNVVFVLTTNWLPEELRRPKFETLLQDEGRMFEV 842
Query: 623 ---NMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTID-NVSSGNKKDFSR 678
N L+++ ++ H +A+W + + E +++D N++ G D
Sbjct: 843 ASSNWQLELSIGDKQIKH--RADWLCDDARPAKVAKELSGGPGLSLDLNLAVGALDDT-- 898
Query: 679 QSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNR 738
+ S N+ DL+++ D E G L+ + P L+L+ + VF
Sbjct: 899 EGSRNSSDLSVEQDQEK-------GHLA--------VKCSTPDPDCDLLNLVDDAIVFRP 943
Query: 739 N--SSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSLFEKWL 796
+ +T AK FD + + N +F ++E ++ + GS + + E W
Sbjct: 944 VDFAPFRKTVTDCISAK----FDSVIRSSN--SFRIDEDAVDH-MAGSIWLTDEKLEDWA 996
Query: 797 KEVFQTSLEAV--KIGGKGGGIEIRLCFGCKNDKVFANYGFGDSCLPKKIQIAL 848
++V S+E + + G +RL DK +G G LP + IA+
Sbjct: 997 EKVLMPSIERLWRNVKHYSGRAVVRLA--AVTDKALPRWGGGREGLPATVPIAI 1048
>gi|255551163|ref|XP_002516629.1| conserved hypothetical protein [Ricinus communis]
gi|223544231|gb|EEF45753.1| conserved hypothetical protein [Ricinus communis]
Length = 864
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 106/350 (30%), Positives = 164/350 (46%), Gaps = 50/350 (14%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQN-- 58
MREAGFSST +KN +E A S+ C S + +S ++ P F N
Sbjct: 149 MREAGFSSTQVKNKVEQ--AVSLEIC---------SQGTTATSCQSKEITKPQIFSTNNV 197
Query: 59 -------HALFSSQKPA--SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMG 109
H + KP VS +D+ V + KKR NT+I G+CL+ T+++V M
Sbjct: 198 SPSLPFSHYGVTLSKPLDHEVSNDDVMSVLNTLMEKKR-NTIITGECLASTESVVRLVMN 256
Query: 110 RVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTG 169
++ERG P EL+ I F ++LR + +EEVE L EL+ V S + G +Y G
Sbjct: 257 KIERGLAPGELRAMRFISFPL--ISLRDLPQEEVEQKLVELRCTVKSY--LNRGVFLYLG 312
Query: 170 DLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQT 229
D+KW + + + + S Y +++ E+ +L+ + R+WLM A++QT
Sbjct: 313 DIKWVAEFW-----SEYGEQRRSYYCSGEYIIMELKRLIRGI--GETERLWLMGVATFQT 365
Query: 230 YMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQV-WETKPFAIK 288
YMKC+ +P LE W L + IP G L LSL+ S + R + + W A+
Sbjct: 366 YMKCKSGRPSLETIWELYPLPIPVGSLSLSLNLDSDLQCRYRSKVSTNGYGWPKLESAV- 424
Query: 289 EEEDHKLNCCAECTSNYEEEAQLFKSGQKKL-----------LPPWLQPH 327
D+ C + + N+ +AQ Q++ LP WL+ H
Sbjct: 425 ---DNHSTCFTDFSVNFNRDAQSIGCSQREFTTNFTVSTSSSLPSWLKQH 471
>gi|356498707|ref|XP_003518191.1| PREDICTED: uncharacterized protein LOC100807485 [Glycine max]
Length = 867
Score = 129 bits (325), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 107/373 (28%), Positives = 175/373 (46%), Gaps = 48/373 (12%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQC-----YTSSGGGVFSSPCSPSSSEAHHFINPNTF 55
MREAGFSST +K+++E A S+ C + + + SS E ++P
Sbjct: 155 MREAGFSSTQVKSNVEQ--AVSLEICSQDNGSGKNNNNSNKAKENNSSGEKGSVLDP--- 209
Query: 56 WQNHALFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGD 115
+ ED+ V E +++R+ VIVG+C++ + +V M +V++GD
Sbjct: 210 --------------IRVEDVASVIENLGSERKRSVVIVGECVTSLEGVVRGVMEKVDKGD 255
Query: 116 VPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
V E V + + + + EVE + EL+ V + + G ++Y GDLKW
Sbjct: 256 VGDECTLRGVKFISLSLSSFGNVSRVEVEQKVGELRSLVKA-SEHSKGYVLYLGDLKWVF 314
Query: 176 DQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQM 235
D + + CY P++H+V E+GKLV+ + R W+M A++Q YM+C+
Sbjct: 315 DFRARGSQG------GGCYCPVDHMVVEIGKLVNGVEE-NGARFWVMGVATFQAYMRCKN 367
Query: 236 RQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKL 295
QP LE W L ++IP+G L LSL + S +++ T + ++ T +DHK
Sbjct: 368 GQPSLETLWGLHPITIPAGSLRLSLITDSGVQNQPTNEKADNRT--TWLLLEGVGDDHKQ 425
Query: 296 NCC-AE-CTSNYEEEAQLFK------SGQKKLLPPWLQPHSSSNA--NQKDE----LVEM 341
C AE T N E + + S LP WLQ + + N D+ + E+
Sbjct: 426 QPCFAEPSTKNETTEVRSLQSSSTCNSDSSSTLPAWLQQYKNENKGITHNDQNCVPVGEL 485
Query: 342 RRKWNRSCHSLHQ 354
+KWN C S+ +
Sbjct: 486 CKKWNSMCSSIQK 498
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 54/136 (39%), Gaps = 33/136 (24%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSA---------------KKATWFLLQGNDTIGK 522
L L++ VPWQ D I I L++C+S K+ TW QG D K
Sbjct: 618 LCNALEKKVPWQKDIIPEIASTLLQCRSGMVRRKGKVMRNSEEVKEETWLFFQGVDVEAK 677
Query: 523 RRLALSIAESVFGSTDLLFHIDM------------------RKRNDGVSSHSEMLMGTLK 564
++A +A VFGS + + I + R R + S+ E +
Sbjct: 678 EKIARELARLVFGSQNDVVSIALSTFASTRADSTEDYSRNKRSREETSCSYIERFAEAMA 737
Query: 565 NYEKLVVLVEDIDLAD 580
V LVEDI+ AD
Sbjct: 738 CNPHRVFLVEDIEQAD 753
>gi|413916916|gb|AFW56848.1| hypothetical protein ZEAMMB73_979207 [Zea mays]
Length = 1023
Score = 126 bits (317), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 210/948 (22%), Positives = 358/948 (37%), Gaps = 191/948 (20%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPC-SPSSSEAHHFINPNTFWQNH 59
MREA FSS+ +K IE S AS S V ++ +PS S + N +
Sbjct: 164 MREASFSSSAVKTTIEQSLASPSPPPSAVSTPTVAATTTLAPSPSPLSRLGSANAYMNPR 223
Query: 60 ALFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQE 119
++ +++ V +V L+ RRN V+VGD + DA++ + + R+ P
Sbjct: 224 LAAAAGGGGDDARK----VLDVMLKPARRNPVLVGD--AGPDAVLKEAVRRIPMAGSPS- 276
Query: 120 LKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQE 179
L V+ L K + + +L + L G ++ GDLKW VD
Sbjct: 277 LAGAKVLPLESDLAKLAG-DKAALAARIGDLGPVIQRLLVDHGAVVLDLGDLKWLVD--- 332
Query: 180 SNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPP 239
G A+ +VSE+ +L+ S +VW + TA+ TY++C++ P
Sbjct: 333 --------GPAAAASEGGKAVVSEMARLLRQFGSG---KVWAVGTAACATYLRCKVYHPT 381
Query: 240 LEIQWALQAVSI----PSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIK----EEE 291
+E +W LQAVSI P G L S+ + + + + + P A++
Sbjct: 382 MEAEWDLQAVSIARSAPLAGAALRPGSTGILGNSVGMLSHTLRPMPVTPTALRWPPGAGS 441
Query: 292 DHKLNC----CAECTSNYEEEAQLFKSGQKK-----------LLPPWLQPHSSSNANQKD 336
D+ L C C +Y+ E + QK+ LP W+QP S ++
Sbjct: 442 DNPLMAKPVMCLLCKGSYDRELAKLAAEQKENPASRAEAAKPGLPHWMQPSSDQPQTKEQ 501
Query: 337 ELV------EMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQS 390
EL E+ +KW +C H R S L A+ P P +
Sbjct: 502 ELKRKEAAEELEKKWRETCARTHGNRAGAPALSLGL-------------AALVPRPPVEP 548
Query: 391 SIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKS 450
I +S V T++ N KP+G P + KS
Sbjct: 549 KI----------------QHSRGGV---------PTLQMNTN--WEKPEGT-PTSELRKS 580
Query: 451 NEGKEVKITLALGNSE---------------------------LSDSAKLQRSDLYKVLQ 483
G VK LALG + +SD +R L KVL
Sbjct: 581 PLGSPVKTDLALGPMDPGATVENDQKENYTEGLTSMQKAKIAGISDIESFKR--LLKVLT 638
Query: 484 ENVPWQFDSIHSIVEVLVECKSA---------KKATWFLLQGNDTIGKRRLALSIAESVF 534
+ V WQ D+ +I V+++C++ + W L G D GKR++ +++E +
Sbjct: 639 QKVSWQSDAASAIAAVVIQCRTGSGKRRNIGTRGDIWLLFVGPDQAGKRKMVNALSELMV 698
Query: 535 GSTDLL--FHIDMRKRNDG--------VSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFI 584
+ ++ F D R DG + + + ++ V+++E ID D
Sbjct: 699 NAQPVVVNFGGDSRLSKDGNGLNPGFWGKTSLDRVTEAVRQNPCSVIILEGIDQVDAVVR 758
Query: 585 KILADGFETE----------NFGKVIFVLTKG------DSSNYEERIENQDSVI-----N 623
+ ET + G VIFVLT +E ++++ ++ N
Sbjct: 759 GKIKRAMETGRLVDSRGREVSLGNVIFVLTTNWLPEELRRPKFETLLQDEGRMLEVASSN 818
Query: 624 MTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTID-NVSSGNKKDFSRQSSF 682
L+++ ++ H +A+W + + E +++D N++ G D S
Sbjct: 819 WQLELSIEDKQVKH--RADWLCDDARPAKVAKELSGGQGLSLDLNLAVGALDDT--DGSR 874
Query: 683 NTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRN--S 740
N+ DL++ E E + G L+ + PA L+L+ + VF +
Sbjct: 875 NSSDLSV-------EQEHEKGHLA--------VKCSTPAPDYDLLNLVDDAIVFRPVDFA 919
Query: 741 SNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSLFEKWLKEVF 800
+T AK FD + N +F ++E ++ + GS + + E W ++V
Sbjct: 920 PFRKTVTDCISAK----FDSVIGSCN--SFRIDEDAVDR-MAGSIWLTDEKLEDWAEKVL 972
Query: 801 QTSLEAVKIGGKGGGIEIRLCFGCKNDKVFANYGFGDSCLPKKIQIAL 848
S+E + K + DK G+ LP + IA+
Sbjct: 973 MPSIERLWCNVKHYSGRAVVRIAAVTDKALPRLGWAREGLPATVPIAI 1020
>gi|115475559|ref|NP_001061376.1| Os08g0250900 [Oryza sativa Japonica Group]
gi|113623345|dbj|BAF23290.1| Os08g0250900, partial [Oryza sativa Japonica Group]
Length = 972
Score = 125 bits (315), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 217/944 (22%), Positives = 380/944 (40%), Gaps = 169/944 (17%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPS--------SSEAHHFINP 52
MREA FSS +K+ IE S S+ C +++ + P S + A+ ++NP
Sbjct: 99 MREASFSSAAVKSIIEQS-LSAPSPCPSAAASTTTAGPGPLSPSPSPLPRAGAANAYLNP 157
Query: 53 NTFWQNHALFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVE 112
A + +D + V +V L+ RRN V+VGD + DA++ + + R+
Sbjct: 158 RL---AAAAAVASGGGGGGGDDARKVIDVMLKPTRRNPVLVGD--AGPDAVLKEAIRRIP 212
Query: 113 RGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLK 172
P L V+ A + K + + +L V+ L GG ++ GDLK
Sbjct: 213 TAGFPA-LAGAKVLPLE-AELAKLAGDKAAMAARIGDLGAVVERLLGEHGGVVLDLGDLK 270
Query: 173 WTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMK 232
W VD G A+ V+E+G+L+ A VW + TA+ TY++
Sbjct: 271 WLVD-----------GPAAAASEGGKAAVAEMGRLLRRFGRAG---VWAVCTAACTTYLR 316
Query: 233 CQMRQPPLEIQWALQAVSIP----------------SGGLGLSLHSSSVHESRLTFSQNP 276
C++ P +E +W L AV I GG G+ L+SS L+ + P
Sbjct: 317 CKVYHPGMEAEWDLHAVPIARGGAPIAAAAAGSALRPGGSGI-LNSSM---GMLSPALRP 372
Query: 277 SQVWET----KPFAIKEEEDHKLNCCAECTSNYEEEAQLFKSGQ-----------KKLLP 321
V T P + K C C +YE E ++ Q K LP
Sbjct: 373 MPVTPTALRWPPPGSDQSPAAKPAMCLLCKGSYERELAKLEAEQTDKPASRPEAAKPGLP 432
Query: 322 PWLQPHSSSNANQKDELV------EMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGK 375
WLQ + N ++ EL E+ RKW +C +H S L
Sbjct: 433 HWLQLSNDQNKAKEQELKLKRSKDELERKWRETCARIHSACPMAPALSVPL--------- 483
Query: 376 SCSYASTYPWWPSQSSIFLDSNSISFAESAMKPHNSSNSVA---KFRRQQSCSTIEFNFG 432
A+ P P + + + + + M P SVA + R+ S ++ +
Sbjct: 484 ----ATFTPRPPVEPKLGV-ARGAAVPTLKMNPSWEKPSVAPTLELRKSPPASPVKTDLV 538
Query: 433 NCTRKPQGVEPRLDSLKSNEGKEVKITL-ALGNSELSDSAKLQR-SDLYKVLQENVPWQF 490
C P G P ++ NE KE L AL ++++ + ++ L K L E V WQ
Sbjct: 539 LCRLDP-GTNPAVE----NEQKESCEGLTALQKAKIAGISDIESFKRLLKGLTEKVSWQS 593
Query: 491 DSIHSIVEVLVECKSA---------KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLF 541
D+ +I V+++C+S + W L G D GKR++ +++E + + ++
Sbjct: 594 DAASAIAAVVIQCRSGSGKRRNVGTRGDMWLLFVGPDQAGKRKMVNALSELMANTRPVVV 653
Query: 542 HIDMRKR-----NDGVS------SHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADG 590
+ R NDG + + + + ++ V+++E ID D +
Sbjct: 654 NFGGDSRLGRVGNDGPNMGFWGKTALDRVTEAVRQNPFSVIVLEGIDQVDVVVHGKIKRA 713
Query: 591 FETE----------NFGKVIFVLTKG------DSSNYEERIENQDSVINMT-----LKVN 629
ET + G VIFVLT SN E + ++ ++ T L+++
Sbjct: 714 METGRLPDSRGREVSLGNVIFVLTTNWVPEELKGSNVETLLRGEERMLESTSSSWQLELS 773
Query: 630 ERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTID-NVSSGNKKDFSRQSSFNTLDLN 688
++ H +A+W + + E + +++D N++ G D + S N+ D++
Sbjct: 774 IGDKQVKH--RADWLCDDVRPAKLAKELSSSHGLSLDLNLAVGALDDT--EGSHNSSDVS 829
Query: 689 MKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGK--I 746
+ E EQ+ G+L+ + R + PA + L+L+ + VF + +
Sbjct: 830 V-------EQEQEKGQLA-----VKR---STPAPGSDILELVDDAIVFRPVDFTPFRKTV 874
Query: 747 TGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSLFEKWLKEVFQTSLEA 806
T AK F+ + + +F ++E + + ++GS + + E W ++V + S+E
Sbjct: 875 TDCISAK----FESVMGSSS--SFRIDEDAV-DWMVGSVWLTDEKIEDWAEKVLKPSIER 927
Query: 807 V--KIGGKGGGIEIRLCFGCKNDKVFANYGFGDSCLPKKIQIAL 848
+ + G IRL K +G G LP + IA+
Sbjct: 928 LWHNVKHDSGRSIIRLT--AVAAKALPRWGGGREGLPVAVTIAI 969
>gi|40253563|dbj|BAD05509.1| 101 kDa heat shock protein; HSP101-like protein [Oryza sativa
Japonica Group]
Length = 1041
Score = 125 bits (314), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 217/944 (22%), Positives = 380/944 (40%), Gaps = 169/944 (17%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPS--------SSEAHHFINP 52
MREA FSS +K+ IE S S+ C +++ + P S + A+ ++NP
Sbjct: 168 MREASFSSAAVKSIIEQS-LSAPSPCPSAAASTTTAGPGPLSPSPSPLPRAGAANAYLNP 226
Query: 53 NTFWQNHALFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVE 112
A + +D + V +V L+ RRN V+VGD + DA++ + + R+
Sbjct: 227 RL---AAAAAVASGGGGGGGDDARKVIDVMLKPTRRNPVLVGD--AGPDAVLKEAIRRIP 281
Query: 113 RGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLK 172
P L V+ A + K + + +L V+ L GG ++ GDLK
Sbjct: 282 TAGFPA-LAGAKVLPLE-AELAKLAGDKAAMAARIGDLGAVVERLLGEHGGVVLDLGDLK 339
Query: 173 WTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMK 232
W VD G A+ V+E+G+L+ A VW + TA+ TY++
Sbjct: 340 WLVD-----------GPAAAASEGGKAAVAEMGRLLRRFGRAG---VWAVCTAACTTYLR 385
Query: 233 CQMRQPPLEIQWALQAVSIP----------------SGGLGLSLHSSSVHESRLTFSQNP 276
C++ P +E +W L AV I GG G+ L+SS L+ + P
Sbjct: 386 CKVYHPGMEAEWDLHAVPIARGGAPIAAAAAGSALRPGGSGI-LNSSM---GMLSPALRP 441
Query: 277 SQVWET----KPFAIKEEEDHKLNCCAECTSNYEEEAQLFKSGQ-----------KKLLP 321
V T P + K C C +YE E ++ Q K LP
Sbjct: 442 MPVTPTALRWPPPGSDQSPAAKPAMCLLCKGSYERELAKLEAEQTDKPASRPEAAKPGLP 501
Query: 322 PWLQPHSSSNANQKDELV------EMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGK 375
WLQ + N ++ EL E+ RKW +C +H S L
Sbjct: 502 HWLQLSNDQNKAKEQELKLKRSKDELERKWRETCARIHSACPMAPALSVPL--------- 552
Query: 376 SCSYASTYPWWPSQSSIFLDSNSISFAESAMKPHNSSNSVA---KFRRQQSCSTIEFNFG 432
A+ P P + + + + + M P SVA + R+ S ++ +
Sbjct: 553 ----ATFTPRPPVEPKLGV-ARGAAVPTLKMNPSWEKPSVAPTLELRKSPPASPVKTDLV 607
Query: 433 NCTRKPQGVEPRLDSLKSNEGKEVKITL-ALGNSELSDSAKLQR-SDLYKVLQENVPWQF 490
C P G P ++ NE KE L AL ++++ + ++ L K L E V WQ
Sbjct: 608 LCRLDP-GTNPAVE----NEQKESCEGLTALQKAKIAGISDIESFKRLLKGLTEKVSWQS 662
Query: 491 DSIHSIVEVLVECKSA---------KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLF 541
D+ +I V+++C+S + W L G D GKR++ +++E + + ++
Sbjct: 663 DAASAIAAVVIQCRSGSGKRRNVGTRGDMWLLFVGPDQAGKRKMVNALSELMANTRPVVV 722
Query: 542 HIDMRKR-----NDGVS------SHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADG 590
+ R NDG + + + + ++ V+++E ID D +
Sbjct: 723 NFGGDSRLGRVGNDGPNMGFWGKTALDRVTEAVRQNPFSVIVLEGIDQVDVVVHGKIKRA 782
Query: 591 FETE----------NFGKVIFVLTKG------DSSNYEERIENQDSVINMT-----LKVN 629
ET + G VIFVLT SN E + ++ ++ T L+++
Sbjct: 783 METGRLPDSRGREVSLGNVIFVLTTNWVPEELKGSNVETLLRGEERMLESTSSSWQLELS 842
Query: 630 ERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTID-NVSSGNKKDFSRQSSFNTLDLN 688
++ H +A+W + + E + +++D N++ G D + S N+ D++
Sbjct: 843 IGDKQVKH--RADWLCDDVRPAKLAKELSSSHGLSLDLNLAVGALDDT--EGSHNSSDVS 898
Query: 689 MKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGK--I 746
+ E EQ+ G+L+ + R + PA + L+L+ + VF + +
Sbjct: 899 V-------EQEQEKGQLA-----VKR---STPAPGSDILELVDDAIVFRPVDFTPFRKTV 943
Query: 747 TGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSLFEKWLKEVFQTSLEA 806
T AK F+ + + +F ++E + + ++GS + + E W ++V + S+E
Sbjct: 944 TDCISAK----FESVMGSSS--SFRIDEDAV-DWMVGSVWLTDEKIEDWAEKVLKPSIER 996
Query: 807 V--KIGGKGGGIEIRLCFGCKNDKVFANYGFGDSCLPKKIQIAL 848
+ + G IRL K +G G LP + IA+
Sbjct: 997 LWHNVKHDSGRSIIRLT--AVAAKALPRWGGGREGLPVAVTIAI 1038
>gi|297736015|emb|CBI24053.3| unnamed protein product [Vitis vinifera]
Length = 703
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 180/742 (24%), Positives = 304/742 (40%), Gaps = 139/742 (18%)
Query: 204 VGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSI----PSGGL--- 256
+GKL++ S+ R+WL+ TA+ +TY++CQ+ P +E W LQAV I P GL
Sbjct: 1 MGKLLATFGEGSNGRLWLIGTATCETYLRCQVYHPSMENDWDLQAVPIAARTPVPGLFSR 60
Query: 257 -GLSLHSSSVHESRLTFSQNPSQVWETKPFAIKEEED--HKLNCCAECTSNYEEEAQLFK 313
G + SS ES P+ + P + E D K++CC +C NYE+E +
Sbjct: 61 FGTNGILSSSVESLTPMKNFPTAI-TALPRRVSENMDPAQKMSCCPQCMENYEQELGKLE 119
Query: 314 SGQ-------------KKLLPPWLQPHSSSNANQK---------DELV------EMRRKW 345
+ + LP WL+ + + + K EL+ ++ +KW
Sbjct: 120 GQEFEKSSSEVKSEVSRSSLPQWLKNAKALDGDVKTTDQSQTKDQELIWKQKPQDLLKKW 179
Query: 346 NRSCHSLHQGRH---------TQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDS 396
N +C LH H T + S N +L G+ P ++ L+S
Sbjct: 180 NDTCLHLHPNFHQPNLNSERITPTALSMTGLYNATLLGRQAFQPKLQPTRNLGETLQLNS 239
Query: 397 NSIS--FAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGK 454
N ++ E A+ P S R + N T + E D + +
Sbjct: 240 NLVANQPCEQAVTPPGSP-----VRTDLVLGRTKIN--ETTTEKIHKEHVKDFFQCISSE 292
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK---------S 505
+ L N +LS L K L E V WQ D+ ++ + +CK
Sbjct: 293 SLNKFHELQNDKLSPLDADSVKKLLKGLAEKVSWQQDAARTVATTVTQCKMGNGKRRSAG 352
Query: 506 AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGV-------SSHSEM 558
+K W L G D IGK+++A +++E V G ++ + R R+DG + +
Sbjct: 353 SKGDIWLLFTGPDRIGKKKMAAALSELVCGVNPIMICLGSR-RDDGELDMNFRGKTAVDR 411
Query: 559 LMGTLKNYEKLVVLVEDIDLADPQF---IK------ILADGFETE-NFGKVIFVLTKGDS 608
+ ++ V+++EDID AD IK L D E + G VIF+LT
Sbjct: 412 IAEAVRRNHFSVIMLEDIDEADMLVQGSIKRAMERGRLVDSHGREVSLGNVIFILT---- 467
Query: 609 SNYEERIENQDSVINMTLKVNERNQNF--------------DHKRKAEW-EFANKTKSPR 653
+N+ ++N+ S+ N TL E+ + KR+A W +++ PR
Sbjct: 468 ANW--LVDNRKSLSNSTLLNEEKLASIAGGGWQLKLSASEKSAKRRANWLHDEDRSTKPR 525
Query: 654 IDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLT 713
KE+ ++++ D + + +D S N+ DL + D ED++G + L P S+ +
Sbjct: 526 ---KENGSALSFDLNQAADTEDDRADGSRNSSDLTI--DHEDEQGPENRC-LPPTSA--S 577
Query: 714 RENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVE 773
RE L+ + N F N I + + F + +K++ VE
Sbjct: 578 RE----------LLNSVDNVITFKPVDFN--PIRHQVRSCIARKFSSVMG--DKLSIQVE 623
Query: 774 ERVLEEVLIGSGFFHNSLFEKWLKEV-------FQTSLEAVKIGGKGGGIEIRLCFGCKN 826
+ LE++L G + S E+W ++V + S+ + + +RL F
Sbjct: 624 DEALEKIL-GGVWLGRSGLEEWAEKVLVPGFHQLKASMSSTDAACDESTMLVRLEF---F 679
Query: 827 DKVFANYGFGDSCLPKKIQIAL 848
D + G+GD LP KI + +
Sbjct: 680 DSDSDSRGYGD-WLPSKITVVV 700
>gi|147815203|emb|CAN74565.1| hypothetical protein VITISV_004969 [Vitis vinifera]
Length = 959
Score = 124 bits (310), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 119/440 (27%), Positives = 202/440 (45%), Gaps = 68/440 (15%)
Query: 31 GGGVFSSPCSPSSSEAHH-FINPNTFWQNHALFSSQ---KPASVSKEDIKLVFEVFLRKK 86
G G F PC+P+ + + ++NP Q +A ++ + E +K V ++ LR K
Sbjct: 15 GLGGFRGPCAPTPTPTRNLYLNPRLQQQGNAATAAAAANQSGHQRAEKVKRVVDILLRTK 74
Query: 87 RRNTVIVGDCLSITDALVFDFMGRVER---GDVPQELKQTHVIKFHFAPVTLRFMKKEEV 143
+RN V+VG+ S +A++ + + R+E+ GD P LK VI H ++L + ++
Sbjct: 75 KRNPVLVGE--SEPEAVMKELLRRIEKRDFGDGP--LKNVEVISLHRE-LSLNNSDRTQI 129
Query: 144 EMNLTELKRKVDSLTSVGGGAIIY-TGDLKWTVDQQES---NNNNNFNGEIASCYNPINH 199
L EL R V++ +GGG+II GDLKW V+Q + + ++ S
Sbjct: 130 PTKLKELGRLVEA--RIGGGSIILDLGDLKWLVEQPVNLGVAGSGTVGQQVVSEAG--RA 185
Query: 200 LVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSI----PSGG 255
V+E+GKL++ S+ R+WL+ TA+ +TY++ Q+ P +E W LQAV I P G
Sbjct: 186 AVAEMGKLLAMFGEGSNGRLWLIGTATCETYLRFQVYHPSMENDWDLQAVPIAARTPVPG 245
Query: 256 LGLSLHSSSVHES---RLTFSQNPSQVWETKPFAIKEEED--HKLNCCAECTSNYEEEAQ 310
L ++ + S LT +N P + E D K++CC +C NYE+E
Sbjct: 246 LFSRFGTNGILSSSVESLTPMKNFPTAITALPRRVSENMDPAQKMSCCPQCMENYEQELG 305
Query: 311 LFKSGQ-------------KKLLPPWLQPHSSSNANQK---------DELV------EMR 342
+ + + LP WL+ + + + K EL+ ++
Sbjct: 306 KLEGQEFEKSSSEVKSEVSRSSLPQWLKNAKALDGDVKTTDQSQTKDQELIWKQKPQDLL 365
Query: 343 RKWNRSC---------HSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIF 393
+KWN +C H+L+ R T + S + N +L G+ P ++
Sbjct: 366 KKWNDTCLHLHPNFHQHNLNSERITPTALSMSGLYNATLLGRQAFQPKLQPTRNLGETLQ 425
Query: 394 LDSNSIS--FAESAMKPHNS 411
L+SN ++ E A+ P S
Sbjct: 426 LNSNLVANQPCEQAVTPPGS 445
>gi|449534098|ref|XP_004174005.1| PREDICTED: chaperone protein ClpB1-like, partial [Cucumis sativus]
Length = 387
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 136/275 (49%), Gaps = 54/275 (19%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSST +KN+IE+ S++ + S++ P F+
Sbjct: 155 MREAGFSSTAVKNNIEEYSSNIITT----------------STATTQTTTTPLFFFPGSG 198
Query: 61 LFSSQKPASVSKEDIKLVFEVFL-RKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQE 119
S + AS K VFEVFL +KR+N V+VGD ++ +V + M + + G+VP+E
Sbjct: 199 SSSGSENAS------KFVFEVFLGMRKRKNVVLVGDS---SEGVVLEVMRKFKMGEVPEE 249
Query: 120 LKQTHVIKFHFAPVTLRFMKKEEV-EMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQ 178
+K ++F V V E +L+ D + GG ++Y GDLKW V++
Sbjct: 250 MKGVKFVEF----VPYNNNNNSSVSEFLRRKLEENYDHTENNEGGVVVYVGDLKWIVER- 304
Query: 179 ESNNNNNFNGEIASCYN-PINHLVSEVGKLVSD---------CNSASSTRVWLMATASYQ 228
SC N ++ LV E+ +L+ + N ++W+M ASYQ
Sbjct: 305 ------------GSCSNFGVDGLVGEIERLLLEGFHYNGHNNINIKKKIKIWVMGVASYQ 352
Query: 229 TYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSS 263
YM+CQMR P LE QW L A+ +PS GL L+LHSS
Sbjct: 353 IYMRCQMRLPSLETQWDLHALPLPSSGLALALHSS 387
>gi|356533304|ref|XP_003535205.1| PREDICTED: uncharacterized protein LOC100811773 [Glycine max]
Length = 836
Score = 123 bits (308), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 168/371 (45%), Gaps = 67/371 (18%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSS+ +K +E + + + S+ + NT
Sbjct: 156 MREAGFSSSLVKTRVEQAVSMELV------------------CSQQQAYSKENT------ 191
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQEL 120
V +D+ V + KRRNTVIVG+ L+ + +V + +ERG V EL
Sbjct: 192 -----TELQVLGDDVTSVLSELV-SKRRNTVIVGESLASPEGIVRGLIENLERGSVQGEL 245
Query: 121 KQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQES 180
+ + V+ R + K+EVE L EL+ V S VG G I+Y GDLKW + S
Sbjct: 246 RFVQFVSLPL--VSFRNIGKKEVERKLVELRNLVKS--HVGRGFILYLGDLKWLFEFWSS 301
Query: 181 NNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPL 240
N Y + H+V E+ KL+S + + R+WLM A++ TYMK Q P L
Sbjct: 302 YCEQRTNY-----YCSVVHIVMELKKLIS--GNGENGRLWLMGIATFGTYMKGQACHPSL 354
Query: 241 EIQWALQAVSIP----SGGLGLSLHSS-SVHE-SRLTFSQNPSQVWETKPFAIKEEEDHK 294
E W L ++P S LGL+ S V E S++TF + + F + +
Sbjct: 355 ETIWDLHLFTVPVLLSSLRLGLTFDSDFQVQERSKVTF--------KDESFEERAKVRKY 406
Query: 295 LNCCAECTSNYEEEAQ-------LFKSGQKKLLPPWLQ----PHSSSNANQKD-ELVEMR 342
L CC + + N+E+EA+ + K LP WLQ S NQ++ +L ++
Sbjct: 407 LTCCRDFSLNFEKEAKSTTNSITISKRDCTTNLPTWLQNCKEERSRIMENQENAKLRDIC 466
Query: 343 RKWNRSCHSLH 353
+KWN C S H
Sbjct: 467 KKWNSFCSSAH 477
>gi|449437858|ref|XP_004136707.1| PREDICTED: uncharacterized protein LOC101217335 [Cucumis sativus]
Length = 757
Score = 120 bits (301), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 107/196 (54%), Gaps = 10/196 (5%)
Query: 72 KEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFA 131
+EDI V K+R+ V+VG+C+ + +V +GRVE+ +VP+ LK+ I +
Sbjct: 210 EEDIAAVINELAEMKKRSLVVVGECVGNVECVVEAAIGRVEKKEVPECLKEVKFINLSIS 269
Query: 132 PVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIA 191
+ R + EV+ + ELK + S +G G I+Y GD+KW++D +E+ ++ N +
Sbjct: 270 --SFRDRSRIEVDEKVMELKSLIRSNYCIGKGVILYVGDIKWSIDYRENYYYHSSN-QRR 326
Query: 192 SCYNPINHLVSEVGKLVSD-------CNSASSTRVWLMATASYQTYMKCQMRQPPLEIQW 244
Y P+ H++ E+GKLV VW+M A++QTYM+C+ P LE
Sbjct: 327 GYYCPVEHMIMELGKLVYGNYDQQIHQPKGGGVNVWIMGIATFQTYMRCKTGNPSLETLL 386
Query: 245 ALQAVSIPSGGLGLSL 260
A+ ++IP+G LSL
Sbjct: 387 AIHPLTIPTGSFRLSL 402
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 33/136 (24%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSA-------------KKATWFLLQGNDTIGKRR 524
L L++ VPWQ + + I +++C+S K+ TW L QGND GK +
Sbjct: 500 LCNALEKKVPWQKNVVGDIASAVLQCRSGMGRRKGKMGHGDFKEETWLLFQGNDLRGKEK 559
Query: 525 LALSIAESVFGS-TDLLFHIDM-------------------RKRNDGVSSHSEMLMGTLK 564
+A +A +FGS T L I + R R++ S+ E +
Sbjct: 560 VAEELARVIFGSATSNLVSITLSSFSSTRSADSTEDNCRNKRSRDEQSCSYLERFAEAVS 619
Query: 565 NYEKLVVLVEDIDLAD 580
V LVED++ AD
Sbjct: 620 INPHRVFLVEDVEQAD 635
>gi|449446307|ref|XP_004140913.1| PREDICTED: uncharacterized protein LOC101210915 [Cucumis sativus]
Length = 762
Score = 120 bits (300), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 146/276 (52%), Gaps = 34/276 (12%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPN---TFWQ 57
MREAGFSST +KN +E + + V + + P+ S INP+ F Q
Sbjct: 157 MREAGFSSTQVKNRVEKAVSLEVKITHKTH----------PNLS-----INPSQSIPFTQ 201
Query: 58 NHALFSS-QKPASVSKEDIKLVFEVFLR----KKRR--NTVIVGDCLSITDALVFDFMGR 110
+ S+ Q+ + ++E++ V E K RR NT+IVG+ L + +V M R
Sbjct: 202 ITKIPSTKQQFENNNEEEVTHVLEELSNRMNNKMRRVSNTIIVGESLGTVETIVRGVMER 261
Query: 111 VERGDVPQELKQTHVIKFHFAPV-TLR-FMKKEEVEMNLTELKRKVDSLTSVGGGAIIYT 168
E+G+VP+ELK HV P+ +LR + KEE+E + EL+ V S +G I Y
Sbjct: 262 FEKGEVPKELK--HVEFLSLNPLFSLRNVVSKEEIEQKILELRCIVKS--CMGKRVIFYL 317
Query: 169 GDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQ 228
GDLKW E +N + E Y+ + L+ E+ +LV++ NS + + W++ A++Q
Sbjct: 318 GDLKWV---SEFWSNYCYGEEERRFYSYVEELIMEIKRLVNNNNSENYGKFWVLGIATFQ 374
Query: 229 TYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSS 264
YMKC++ P L+ W+L +++P G L LSL+ S
Sbjct: 375 MYMKCKVGHPSLDSLWSLHPLTVPVGSLSLSLNFES 410
>gi|413936868|gb|AFW71419.1| hypothetical protein ZEAMMB73_805690 [Zea mays]
Length = 831
Score = 119 bits (299), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 118/423 (27%), Positives = 189/423 (44%), Gaps = 80/423 (18%)
Query: 1 MREAGFSSTTIKNHIEDSSASSV------------------------------------- 23
MREAGFSS +K +E+ SA+ +
Sbjct: 213 MREAGFSSAAVKASLEEESAAMLAALGNHQVHHHGASSTPPPPPPSSHHPPTAAGLVLPP 272
Query: 24 --FQCYTSSGGGVF---SSPCSPS-------SSEAHHFINPNTFWQNHALFSSQKPASVS 71
F GGG F + CS + S + H P+ +S+ P
Sbjct: 273 RHFFLLDPYGGGGFPAHAGACSGAPWAAPFPSVHSRHPPEPDDV-------NSEPPCEAE 325
Query: 72 KEDIKLVFEVFLRKKRR----NTVIVGDCLSITDALVFDFMGRVERG-DVPQELKQTHVI 126
ED++ + EV R++ R N V+V D +A V + + RVERG DVP EL+ V+
Sbjct: 326 AEDVRAIVEVMTRRRGRLRRANPVVVADSAPAAEACVAELVRRVERGGDVPDELRGARVL 385
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKV--DSLTSVGGGAIIYTGDLKWTVDQQESNNNN 184
+ H + +R M + + + L+R V + T GGG +IY GD++W VD ++++
Sbjct: 386 RLHLSRARVRLMTRADADAWAAGLRRSVAGSNSTGAGGGLVIYVGDMRWAVDDGTDDDDH 445
Query: 185 NFN---GEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLE 241
+ Y+P HL +E+ +L++D +++R WL+A ASY T+M+CQ L+
Sbjct: 446 ARGLQGPSSSGSYSPAAHLAAELARLLADLRLRAASRAWLLAAASYATFMRCQRSS--LD 503
Query: 242 IQWALQAVSIP---SGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNCC 298
+ W LQ VS+P GG GL L + +Q P+Q+ +E+ C
Sbjct: 504 VTWGLQPVSVPAGAGGGGGLGLELGPRAATARPAAQRPAQLPPLDRAPREEDGVPTPTLC 563
Query: 299 AECTSNYEEEAQLFKSGQK------KLLPPWLQPHS-SSNANQKDELVEMRRKWNRSCHS 351
AEC +YE EA ++ P W PH+ + KD+L++++ KW+R C
Sbjct: 564 AECAEHYEREASDVRAKAAGTDLALTFFPGW--PHADEPQTSHKDDLMKLKWKWSRLCQQ 621
Query: 352 LHQ 354
+Q
Sbjct: 622 RNQ 624
>gi|413924951|gb|AFW64883.1| hypothetical protein ZEAMMB73_688581 [Zea mays]
Length = 838
Score = 119 bits (298), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 185/754 (24%), Positives = 296/754 (39%), Gaps = 163/754 (21%)
Query: 1 MREAGFSSTTIKNHIEDS-SASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNH 59
MREAGFSS+ +K ++E + SASS SP + + I P + + H
Sbjct: 156 MREAGFSSSQVKANVEKAVSASS-----------------SPEHQQQNTTIPPTS--RAH 196
Query: 60 ALFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQE 119
A S P + D V + +R+ V+VG+ + + +V M RV +G++ Q
Sbjct: 197 AAIS---PGGAASGDAMRVLDCMASGSKRSVVVVGESAATAEVVVKAVMNRVSKGELQQR 253
Query: 120 LKQTHVIKF-HFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQ 178
++ ++F + + + M +EEVE +L+ V + G G ++ DL + +
Sbjct: 254 HERLKNVQFVPLSAASFQRMPREEVEAKAADLRALVRQGCAAGKGVVLVLEDLAYAAEAW 313
Query: 179 ESNNNNNFNGEIA-------SCYNPINHLVSEVGKLVSDCNSASST---RVWLMATASYQ 228
+ + + CY P+ H V EVG LVS R WL+ + Q
Sbjct: 314 AAVSETRRRSSGSGGRDHGQGCYCPVEHAVMEVGSLVSAAAGGGGRGLDRFWLLGFGNNQ 373
Query: 229 TYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPF--- 285
Y+K + QP LE W L + +P GGL LSL +S E Q T+P+
Sbjct: 374 AYLKSRAGQPSLEAVWELHPIVVPDGGLALSLRCNSDAE----------QARATRPWPFA 423
Query: 286 ----AIKEEEDHKLNCC--AECTSNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQKDELV 339
A + E L+C A T N +PPWLQ + ++
Sbjct: 424 NGTAATGDSELITLSCAKVAATTPN---------------VPPWLQGY---------QVQ 459
Query: 340 EMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSI 399
+ R +RS Q S ++ Y+ +T S++ P SSI S
Sbjct: 460 DTTRLASRSTSFQMQDWDPNSNGAA--YHTSEIT---LSFSPQATNSPDASSI-----SG 509
Query: 400 SFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFG-------NCTRK---PQGVEPRLDSLK 449
SFA S M S+ +F+ Q C N+G + R+ P+ P
Sbjct: 510 SFAPSLMM----SSEPWQFKLMQPCP----NYGRGDPFARSSDRQQLLPRPTSPEKSYSV 561
Query: 450 SNEGKEVKITLALGNSEL-SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-- 506
SN + + +EL +++ K+ L L+ P D + I V+++C+S
Sbjct: 562 SNSSEGAPAAESPKFTELTAENLKI----LSNALENRAPRHKDVVTEIASVVLQCRSGMT 617
Query: 507 ------------KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSS 554
TW L QG GK+ ++ +A VFGS I + ++
Sbjct: 618 RKRRRWCCQEKPSAVTWLLFQGAGNDGKKAVSKELARLVFGSYSKFTAISL---SEFTHV 674
Query: 555 HSEMLMG--TLKNYEKL------VVLVEDIDLADPQFIKILADGFETENFGKVIFV---L 603
HS+ G TLK L V + D L +P + I+ DG E ++ I + +
Sbjct: 675 HSDSSSGEITLKRQRSLDTGRSYVQRLYDAILENPHRV-IMIDGVEQLDYESEIGIRNAI 733
Query: 604 TKG--DSSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDAT 661
T G N +E I D++I + + N SPR+ ++
Sbjct: 734 TNGRIRGCNGDE-ISLGDTIIVLNCEALRSMSN--------------ASSPRLKQR---- 774
Query: 662 SVTIDNVSSGNKKDF--SRQSSFNTLDLNMKADD 693
V + GN + +SS TLDLN A+D
Sbjct: 775 -VIEKDGKEGNDMNMENGMESSGFTLDLNACAED 807
>gi|449527911|ref|XP_004170951.1| PREDICTED: chaperone protein ClpB1-like, partial [Cucumis sativus]
Length = 405
Score = 119 bits (297), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 108/199 (54%), Gaps = 16/199 (8%)
Query: 72 KEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFA 131
+EDI V K+R+ V+VG+C+ + +V +GRVE+ +VP+ LK+ I +
Sbjct: 210 EEDIAAVINELAEMKKRSLVVVGECVGNVECVVEAAIGRVEKKEVPECLKEVKFINLSIS 269
Query: 132 PVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQES---NNNNNFNG 188
+ R + EV+ + ELK + S +G G I+Y GD+KW++D +E+ +++N G
Sbjct: 270 --SFRDRSRIEVDEKVMELKSLIRSNYCIGKGVILYVGDIKWSIDYRENYYYHSSNQRRG 327
Query: 189 EIASCYNPINHLVSEVGKLVS-------DCNSASSTRVWLMATASYQTYMKCQMRQPPLE 241
Y P+ H++ E+GKLV VW+M A++QTYM+C+ P LE
Sbjct: 328 Y----YCPVEHMIMELGKLVYGNYDQQIHQPKGGGVNVWIMGIATFQTYMRCKTGNPSLE 383
Query: 242 IQWALQAVSIPSGGLGLSL 260
A+ ++IP+G LSL
Sbjct: 384 TLLAIHPLTIPTGSFRLSL 402
>gi|413924950|gb|AFW64882.1| hypothetical protein ZEAMMB73_688581 [Zea mays]
Length = 835
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 183/751 (24%), Positives = 296/751 (39%), Gaps = 160/751 (21%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSS+ +K ++E + ++S SP + + I P + + HA
Sbjct: 156 MREAGFSSSQVKANVEKAVSAS----------------SSPEHQQQNTTIPPTS--RAHA 197
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQEL 120
S P + D V + +R+ V+VG+ + + +V M RV +G++ Q
Sbjct: 198 AIS---PGGAASGDAMRVLDCMASGSKRSVVVVGESAATAEVVVKAVMNRVSKGELQQRH 254
Query: 121 KQTHVIKF-HFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQE 179
++ ++F + + + M +EEVE +L+ V + G G ++ DL + +
Sbjct: 255 ERLKNVQFVPLSAASFQRMPREEVEAKAADLRALVRQGCAAGKGVVLVLEDLAYAAEAWA 314
Query: 180 SNNNNNFNGEIA-------SCYNPINHLVSEVGKLVSDCNSASST---RVWLMATASYQT 229
+ + + CY P+ H V EVG LVS R WL+ + Q
Sbjct: 315 AVSETRRRSSGSGGRDHGQGCYCPVEHAVMEVGSLVSAAAGGGGRGLDRFWLLGFGNNQA 374
Query: 230 YMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPF---- 285
Y+K + QP LE W L + +P GGL LSL S ++R T + W PF
Sbjct: 375 YLKSRAGQPSLEAVWELHPIVVPDGGLALSL--SDAEQARAT------RPW---PFANGT 423
Query: 286 -AIKEEEDHKLNCC--AECTSNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQKDELVEMR 342
A + E L+C A T N +PPWLQ + ++ +
Sbjct: 424 AATGDSELITLSCAKVAATTPN---------------VPPWLQGY---------QVQDTT 459
Query: 343 RKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSISFA 402
R +RS Q S ++ Y+ +T S++ P SSI S SFA
Sbjct: 460 RLASRSTSFQMQDWDPNSNGAA--YHTSEIT---LSFSPQATNSPDASSI-----SGSFA 509
Query: 403 ESAMKPHNSSNSVAKFRRQQSCSTIEFNFG-------NCTRK---PQGVEPRLDSLKSNE 452
S M S+ +F+ Q C N+G + R+ P+ P SN
Sbjct: 510 PSLMM----SSEPWQFKLMQPCP----NYGRGDPFARSSDRQQLLPRPTSPEKSYSVSNS 561
Query: 453 GKEVKITLALGNSEL-SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA----- 506
+ + +EL +++ K+ L L+ P D + I V+++C+S
Sbjct: 562 SEGAPAAESPKFTELTAENLKI----LSNALENRAPRHKDVVTEIASVVLQCRSGMTRKR 617
Query: 507 ---------KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSE 557
TW L QG GK+ ++ +A VFGS I + ++ HS+
Sbjct: 618 RRWCCQEKPSAVTWLLFQGAGNDGKKAVSKELARLVFGSYSKFTAISL---SEFTHVHSD 674
Query: 558 MLMG--TLKNYEKL------VVLVEDIDLADPQFIKILADGFETENFGKVIFV---LTKG 606
G TLK L V + D L +P + I+ DG E ++ I + +T G
Sbjct: 675 SSSGEITLKRQRSLDTGRSYVQRLYDAILENPHRV-IMIDGVEQLDYESEIGIRNAITNG 733
Query: 607 --DSSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVT 664
N +E I D++I + + N SPR+ ++ V
Sbjct: 734 RIRGCNGDE-ISLGDTIIVLNCEALRSMSN--------------ASSPRLKQR-----VI 773
Query: 665 IDNVSSGNKKDF--SRQSSFNTLDLNMKADD 693
+ GN + +SS TLDLN A+D
Sbjct: 774 EKDGKEGNDMNMENGMESSGFTLDLNACAED 804
>gi|449494128|ref|XP_004159457.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101210915
[Cucumis sativus]
Length = 761
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/265 (32%), Positives = 135/265 (50%), Gaps = 21/265 (7%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFIN--PNTFWQN 58
MREAGFSST +KN +E + + V + + + PS S I P+T Q
Sbjct: 157 MREAGFSSTQVKNRVEKAVSLEVKITHKTHPNLSIN----PSQSIPFTQITKIPSTKQQF 212
Query: 59 HALFSSQKPASVSKEDIKLVFEVFLRKKRR--NTVIVGDCLSITDALVFDFMGRVERGDV 116
+ + + ++ K RR NT+IVG+ L + +V M R E+G+V
Sbjct: 213 ENNNEEEVTNVLEELSNRMN-----NKMRRVSNTIIVGESLGTVETIVRGVMERFEKGEV 267
Query: 117 PQELKQTHVIKFHFAPVTLR-FMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
P+ELK HV V+LR + KEE+E + EL+ V S +G I Y GDLKW
Sbjct: 268 PKELK--HVEFLSLPSVSLRNVVSKEEIEQKILELRCIVKS--CMGKRVIFYLGDLKWV- 322
Query: 176 DQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQM 235
E +N + E Y+ + L+ E+ +LV++ NS + + W++ A++Q YMKC++
Sbjct: 323 --SEFWSNYCYGEEERRFYSYVEELIMEIKRLVNNNNSENYGKFWVLGIATFQMYMKCKV 380
Query: 236 RQPPLEIQWALQAVSIPSGGLGLSL 260
P L+ W+L +++P G L LSL
Sbjct: 381 GHPSLDSLWSLHPLTVPVGSLSLSL 405
>gi|345292293|gb|AEN82638.1| AT4G29920-like protein, partial [Capsella grandiflora]
Length = 184
Score = 115 bits (288), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 109/184 (59%), Gaps = 19/184 (10%)
Query: 427 IEFNFGNCTRK--PQGVEPRLDSLKS---NEGKEVKITLALG------NSELSDSAKLQR 475
IEF+FGN ++ + E LD KS +EG E KITLALG +SE SD + QR
Sbjct: 1 IEFSFGNNHQEGLKKNDELSLDGFKSSNNDEGVETKITLALGHSPFPSDSENSDEEEPQR 60
Query: 476 S----DLYKVLQENVPWQFDSIHSIVEVLVEC--KSAKKATWFLLQGNDTIGKRRLALSI 529
+ +L + L EN+PWQ + + SIVE + E +S ++ TW L+ GND KRRLA+++
Sbjct: 61 AIGMRNLSEKLHENIPWQREVLPSIVEAMEESVKRSKRRDTWILVSGNDVTAKRRLAITM 120
Query: 530 AESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILAD 589
S+FGS + + I++ R S L LK EK+++L+E +DLAD +F+K+L D
Sbjct: 121 TTSLFGSLENMLKINL--RTSKASEACGELENALKEGEKVLILIERVDLADAKFMKLLID 178
Query: 590 GFET 593
FE
Sbjct: 179 RFEA 182
>gi|15234709|ref|NP_194764.1| heat shock-related protein [Arabidopsis thaliana]
gi|7269935|emb|CAB81028.1| putative protein [Arabidopsis thaliana]
gi|332660355|gb|AEE85755.1| heat shock-related protein [Arabidopsis thaliana]
Length = 924
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 192/860 (22%), Positives = 339/860 (39%), Gaps = 184/860 (21%)
Query: 1 MREAGFSSTTIKNHIEDS-SASSVFQCYTSSGGGV-------FSSPCSPSSSEAHHFINP 52
MREA FSS +K+ IE S +SV + G+ F P+ + ++NP
Sbjct: 160 MREASFSSPAVKSAIEQSLIGNSVSNSRQTGSPGIINPSAIGFGYRSVPAPVNRNLYLNP 219
Query: 53 NTFWQNHALFSSQKPASVSKED-IKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRV 111
Q + + D K V E+ +R ++RN V+VGD S LV + + ++
Sbjct: 220 RL---QQPGVGMQSGMMIQRTDEAKRVIEIMIRTRKRNPVLVGD--SEPHILVKEILEKI 274
Query: 112 ERGDVPQ-ELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGD 170
E G+ L+ VI+ V+ ++ L E+ V++ GG + D
Sbjct: 275 ENGEFSDGALRNFQVIRLEKELVS-------QLATRLGEISGLVETRIGGGGVVLDLG-D 326
Query: 171 LKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTY 230
LKW V+ +N V E+ KL+ R+ + TA+ +TY
Sbjct: 327 LKWLVEHPAANGGA----------------VVEMRKLLERYKG----RLCFIGTATCETY 366
Query: 231 MKCQMRQPPLEIQWALQAVSIPSGGLGLSLH---SSSVHESRLTFSQNPSQVWETKPFAI 287
++CQ+ P +E W LQA+ I + ++ S+ + + + S N + P
Sbjct: 367 LRCQVYYPSMENDWDLQAIPIAAKSSLPAIFPRLGSNNNNNAMLLSNNIISIESISPTRS 426
Query: 288 KEEEDHKLNCCAECTSNYEEEA----QLFKSGQKKLLPPWLQPHSSSNANQK-----DEL 338
+ K++CC+ C +YE + + + +LP WLQ +++ K ++
Sbjct: 427 FQIPMSKMSCCSRCLQSYENDVAKVEKDLTGDNRSVLPQWLQNAKANDDGDKKLTKDQQI 486
Query: 339 VEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNS 398
VE+++KWN C LH + + + + + + +S T P P + + L
Sbjct: 487 VELQKKWNDLCLRLHPNQSVSERIAPSTLSMMKINTRS---DITPPGSPVGTDLVLG--- 540
Query: 399 ISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGKEVKI 458
+P+ +S K R E FG
Sbjct: 541 --------RPNRGLSSPEKKTR-------EARFGK------------------------- 560
Query: 459 TLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK----SAKKATWFLL 514
LG+S D K L K L ++V WQ D+ S+ + ECK +K W +
Sbjct: 561 ---LGDSFDIDLFK----KLLKGLAKSVWWQHDAASSVAAAITECKHGNGKSKGDIWLMF 613
Query: 515 QGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR-NDGVSSHSEMLMGTLKNYEK----L 569
G D GK ++A ++++ V GS + + R +DG++ + + +
Sbjct: 614 TGPDRAGKSKMASALSDLVSGSQPITISLGSSSRMDDGLNIRGKTALDRFAEAVRRNPFA 673
Query: 570 VVLVEDIDLADPQF---IKI------LADGFETE-NFGKVIFVLTKGDSSNYEERIENQD 619
V+++EDID AD +KI + D + E + G VI +LT S + + + D
Sbjct: 674 VIVLEDIDEADILLRNNVKIAIERGRICDSYGREVSLGNVIIILTANSSLGSAKNVASID 733
Query: 620 -----SVINM--TLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGN 672
S++N L+++ N + KRK W ++ DN +
Sbjct: 734 ETRLESLVNKGWELRLSVCNSSKTRKRKPNWLYS-------------------DNDQTKQ 774
Query: 673 KKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENIT--NPALSNGFLDLI 730
+K+ DLN A+ + SSD+T E+ N L + + L+
Sbjct: 775 RKEI-------CFDLNEAAEFDS-------------SSDVTVEHDQEDNGNLVHKLVGLV 814
Query: 731 QNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKR--QNKVNFSVEERVLEEVLIGSGFFH 788
+ +F + K +K ES + F + + +E+ LE + G+ +
Sbjct: 815 DDAILFRPVDFDSIK------SKTAESLKKRFSNGLADGLTVEIEDDALERI-AGAIWLS 867
Query: 789 NSLFEKWLKEVFQTSLEAVK 808
E+WL+E +SL +VK
Sbjct: 868 KISLEEWLEEAMGSSLNSVK 887
>gi|345292301|gb|AEN82642.1| AT4G29920-like protein, partial [Capsella grandiflora]
Length = 184
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 109/184 (59%), Gaps = 19/184 (10%)
Query: 427 IEFNFGNCTRK--PQGVEPRLDSLKS---NEGKEVKITLALG------NSELSDSAKLQR 475
IEF+FG+ ++ + E LD KS +EG E KITLALG +SE SD + QR
Sbjct: 1 IEFSFGSNHQEGLKKNDELSLDGFKSSNNDEGVETKITLALGHSPFPSDSENSDEEEPQR 60
Query: 476 S----DLYKVLQENVPWQFDSIHSIVEVLVEC--KSAKKATWFLLQGNDTIGKRRLALSI 529
+ +L + L EN+PWQ + + SIVE + E +S ++ TW L+ GND KRRLA+++
Sbjct: 61 AIGMRNLSEKLHENIPWQREVLTSIVEAMEESVKRSKRRDTWILVSGNDVTAKRRLAITM 120
Query: 530 AESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILAD 589
S+FGS + + I++ R S L LK EK+++L+E +DLAD +F+K+L D
Sbjct: 121 TTSLFGSLENMLKINL--RTSKASEACGELENALKEGEKVLILIERVDLADAKFMKLLID 178
Query: 590 GFET 593
FE
Sbjct: 179 RFEA 182
>gi|345292299|gb|AEN82641.1| AT4G29920-like protein, partial [Capsella grandiflora]
Length = 184
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 108/184 (58%), Gaps = 19/184 (10%)
Query: 427 IEFNFGNCTRK--PQGVEPRLDSLKS---NEGKEVKITLALG------NSELSDSAKLQR 475
IEF+FG+ ++ + E LD KS +EG E KITLALG +SE SD +L R
Sbjct: 1 IEFSFGSNHQEGLKKNDELSLDGFKSSNNDEGVETKITLALGHSPFPSDSENSDEEELXR 60
Query: 476 S----DLYKVLQENVPWQFDSIHSIVEVLVEC--KSAKKATWFLLQGNDTIGKRRLALSI 529
+ +L + L EN+PWQ + + SIVE + E +S ++ TW L+ GND KRRLA+++
Sbjct: 61 AIGMRNLSEKLHENIPWQREVLPSIVEAMEESVKRSKRRDTWILVSGNDVTAKRRLAITM 120
Query: 530 AESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILAD 589
S+F S + + I++ R S L LK EK+++L+E +DLAD +F+K+L D
Sbjct: 121 TTSLFXSLENMLKINL--RTSKASEACGELENALKEGEKVLILIERVDLADAKFMKLLID 178
Query: 590 GFET 593
FE
Sbjct: 179 RFEA 182
>gi|345292295|gb|AEN82639.1| AT4G29920-like protein, partial [Capsella grandiflora]
Length = 184
Score = 111 bits (277), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 106/184 (57%), Gaps = 19/184 (10%)
Query: 427 IEFNFGNCTRK--PQGVEPRLDSLKS---NEGKEVKITLALG------NSELSDSAKLQR 475
IEF+FG ++ + E LD KS +EG E KITLALG +SE SD + QR
Sbjct: 1 IEFSFGXNHQEGLKKNDELSLDGFKSSNNDEGVETKITLALGHSPFPSDSENSDEEEPQR 60
Query: 476 S----DLYKVLQENVPWQFDSIHSIVEVLVEC--KSAKKATWFLLQGNDTIGKRRLALSI 529
+ +L + L EN+PWQ + SIVE + E +S ++ TW L+ GND KRRLA+++
Sbjct: 61 AIGMRNLSEKLHENIPWQREVXPSIVEAMEESVKRSKRRDTWILVSGNDVTAKRRLAITM 120
Query: 530 AESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILAD 589
S+FGS + + I++ R S L LK K+++L+E +DLAD +F+K+L D
Sbjct: 121 TTSLFGSLENMLKINL--RTSKASEACXELENALKEXXKVLILIERVDLADAKFMKLLID 178
Query: 590 GFET 593
FE
Sbjct: 179 RFEA 182
>gi|345292297|gb|AEN82640.1| AT4G29920-like protein, partial [Capsella grandiflora]
Length = 184
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 106/184 (57%), Gaps = 19/184 (10%)
Query: 427 IEFNFGNCTRK--PQGVEPRLDSLKS---NEGKEVKITLALG------NSELSDSAKLQR 475
IEF+FG ++ + E LD KS +EG E KITLALG +SE SD + QR
Sbjct: 1 IEFSFGXNHQEGLKKNDELSLDGFKSSNNDEGVETKITLALGHSPFPSDSENSDEEEPQR 60
Query: 476 S----DLYKVLQENVPWQFDSIHSIVEVLVEC--KSAKKATWFLLQGNDTIGKRRLALSI 529
+ +L + L EN+PWQ + SIVE + E +S ++ TW L+ GND KRRLA+++
Sbjct: 61 AIGMRNLSEKLHENIPWQREVXPSIVEAMEESVKRSKRRDTWILVSGNDVTAKRRLAITM 120
Query: 530 AESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILAD 589
S+FGS + + I++ R S L LK K+++L+E +DLAD +F+K+L D
Sbjct: 121 TTSLFGSLENMLKINL--RTSKASEACGELENALKEXGKVLILIERVDLADAKFMKLLXD 178
Query: 590 GFET 593
FE
Sbjct: 179 RFEA 182
>gi|345292303|gb|AEN82643.1| AT4G29920-like protein, partial [Capsella grandiflora]
Length = 184
Score = 109 bits (273), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 106/184 (57%), Gaps = 19/184 (10%)
Query: 427 IEFNFGNCTRK--PQGVEPRLDSLKS---NEGKEVKITLALG------NSELSDSAKLQR 475
IEF+FG+ ++ + E LD KS +EG E KITLALG +SE SD + QR
Sbjct: 1 IEFSFGSNHQEGLKKNDELSLDGFKSSNNDEGVETKITLALGHSPFPSDSENSDEEEPQR 60
Query: 476 S----DLYKVLQENVPWQFDSIHSIVEVLVEC--KSAKKATWFLLQGNDTIGKRRLALSI 529
+ +L + L EN+PWQ + + SIVE + E +S + TW L+ GND KRRLA+++
Sbjct: 61 AIGMRNLSEKLHENIPWQREVLPSIVEAMEESXKRSKRXDTWILVSGNDVTAKRRLAITM 120
Query: 530 AESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILAD 589
S+FGS + + I++ R S L LK K+++L+E +DLAD +F+K L D
Sbjct: 121 TTSLFGSLENMLKINL--RTSKASEACGELENALKEXXKVLILIERVDLADAKFMKXLID 178
Query: 590 GFET 593
FE
Sbjct: 179 RFEA 182
>gi|345292305|gb|AEN82644.1| AT4G29920-like protein, partial [Neslia paniculata]
Length = 184
Score = 109 bits (273), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 105/185 (56%), Gaps = 21/185 (11%)
Query: 427 IEFNFGNCTRKPQGV----EPRLDSLKS--NEGKEVKITLALGNSEL-SDS--------- 470
IEF+FG + +G+ E LD KS N+G E KITLALG+S SDS
Sbjct: 1 IEFSFG--SNHQEGIKKNDELSLDGFKSTNNDGVETKITLALGHSPFPSDSENSDEEEPE 58
Query: 471 AKLQRSDLYKVLQENVPWQFDSIHSIVEVLVEC--KSAKKATWFLLQGNDTIGKRRLALS 528
++ S L + L EN+PWQ + + SIVE + E +S ++ TW L+ GND KRRLA++
Sbjct: 59 KAIRMSKLSEKLHENIPWQKEVLPSIVEAMEESVKRSKRRDTWILVSGNDVTAKRRLAIT 118
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILA 588
+ S+FGS + + I + R S L LK K+++L+E +DLAD QF+K+L
Sbjct: 119 MTTSLFGSLENMLKI-INLRTSKASEACGELENVLKEGGKVLILIERVDLADAQFMKLLV 177
Query: 589 DGFET 593
D FE
Sbjct: 178 DRFEA 182
>gi|242073028|ref|XP_002446450.1| hypothetical protein SORBIDRAFT_06g016210 [Sorghum bicolor]
gi|241937633|gb|EES10778.1| hypothetical protein SORBIDRAFT_06g016210 [Sorghum bicolor]
Length = 874
Score = 109 bits (272), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 144/651 (22%), Positives = 256/651 (39%), Gaps = 126/651 (19%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSST +K ++E Q S+ ++ +P NPN
Sbjct: 158 MREAGFSSTQVKANVE--------QAVCSTTTTTAATAAAPGK-------NPNPSSSATT 202
Query: 61 LFSSQKPASVSK------------EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFM 108
++Q+ +++K ED+ + + + +R V++ + +S +A+ +
Sbjct: 203 SPTAQEAKAINKLPLPLPLHQARDEDVAAILDCLASRSKRRVVVIAESVSAAEAMAHAAV 262
Query: 109 GRVERGDVPQE-LKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIY 167
+++R + + L+ V+ + + R M +EE E L EL+ V ++
Sbjct: 263 DKIKRAEAKHDALRGAQVVSLRVS--SFRDMPREETERRLGELRCLVRGRRQ--QEVVLV 318
Query: 168 TGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASS---TRVWLMAT 224
DLKW + + + G Y+ + H+V+E+ L++ + WL+
Sbjct: 319 VEDLKWAAEFWAGHVQSGRRGY----YSSVEHVVTELRALLASGGGGDHGGGSMCWLLGF 374
Query: 225 ASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQN--------- 275
+YQ YM+C++ QP LE W LQ +++P+G L LSL + + T +Q+
Sbjct: 375 GTYQAYMRCRVGQPSLESLWGLQTLTVPAGSLVLSLTCAFDDSALGTVNQSMKAGSDTDG 434
Query: 276 --PSQVWETKPFAIKEEEDHKLNCCAECT-SNYEEEAQLFKS--GQKKLLPPWLQPHSSS 330
P+ W P + + CCA+C+ + + +A L + LP WLQ
Sbjct: 435 NAPASCW---PLLGGTQLISR--CCADCSAARIDTKAALPRPFVSSSSTLPSWLQHCRDH 489
Query: 331 NANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLT----GKSCSYASTYPWW 386
L ++ + W+ C R T FS+ + S++ G + S P
Sbjct: 490 QEPTTTHLTDLGKTWSSICSRPSSQRMTL-HFSAPVSPASSISSYEHGGDHHHQSQQPRH 548
Query: 387 PSQSSIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLD 446
S LD+ + + +P ++ K +S D
Sbjct: 549 SSWLLAGLDAAAPAH-HHPWRPKREASGGNKAAASRS---------------------HD 586
Query: 447 SLKSNEGKEVKITLALGN-SELS-DSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK 504
S SN EV+ A ELS ++ K+ L L++ VPWQ + + I +++C+
Sbjct: 587 SGGSNGSVEVECRRAKAKFKELSAENLKV----LCGALEKEVPWQKEIVPEIASAVLQCR 642
Query: 505 S-------------AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR----- 546
S AK+ TW G D GK ++A +A VFGS + I
Sbjct: 643 SGIAKRRDKSRSADAKEETWMFFLGGDADGKEKVARELASLVFGSRNSFVSIRPGGGASA 702
Query: 547 -----------------KRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLAD 580
KR +++ E L + V+ +ED++ AD
Sbjct: 703 SSPPPPAAASSEEHHRSKRPRMAAAYLERLHEAVSENPHRVIFMEDVERAD 753
>gi|242067491|ref|XP_002449022.1| hypothetical protein SORBIDRAFT_05g003570 [Sorghum bicolor]
gi|241934865|gb|EES08010.1| hypothetical protein SORBIDRAFT_05g003570 [Sorghum bicolor]
Length = 883
Score = 102 bits (255), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 122/275 (44%), Gaps = 22/275 (8%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSS+ +K ++E + + S P S AH +P HA
Sbjct: 175 MREAGFSSSQVKANVEKAVSLSSSSSLPDHQPNTTIPP-----SGAHATGSPAAGGSGHA 229
Query: 61 LFSSQKPAS----VSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDV 116
SS++P + +D V + +R V+VG+ + + +V M RV +G++
Sbjct: 230 --SSRRPNAGGNKADDDDAMRVLDCMASGTKRCVVVVGESAATAEVVVKSVMDRVSKGEL 287
Query: 117 PQELKQTHVIKF-HFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
Q ++ ++F + + + M +EEVE +L+ V + G G ++ DL +
Sbjct: 288 QQRHERLKNVQFVPLSAASFQRMPREEVEAKAGDLRALVRQGCAAGKGVVLVLEDLAFAA 347
Query: 176 DQ----QESNNNNNFNGEIASC-YNPINHLVSEVGKLVSDCNSASST-----RVWLMATA 225
D E + + E C Y P+ H V EVG LVS R WL+
Sbjct: 348 DAWAAVSERRRHGSVGREHGQCGYCPVEHAVMEVGSLVSAAAGGGGGGRGLDRFWLLGFG 407
Query: 226 SYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSL 260
+ Q YMK + QP LE W L V +P GGL LSL
Sbjct: 408 NNQAYMKSRAGQPSLEAVWELHPVVVPDGGLSLSL 442
>gi|242061870|ref|XP_002452224.1| hypothetical protein SORBIDRAFT_04g022000 [Sorghum bicolor]
gi|241932055|gb|EES05200.1| hypothetical protein SORBIDRAFT_04g022000 [Sorghum bicolor]
Length = 880
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/266 (27%), Positives = 124/266 (46%), Gaps = 26/266 (9%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSST +K ++E + +S S+ +++ AH NP
Sbjct: 168 MREAGFSSTQVKANVEQAVSSIEANNSASTN----------TAAAAHQNPNPRAAPHEET 217
Query: 61 LFSS-QKPA---SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDV 116
+ S Q P V ED+ +V + + ++ ++V +C + +A + +++RG+
Sbjct: 218 MPSKLQLPLDLDQVRDEDVAVVLDCLASRSKKRVMVVAECAATAEAPTRAAVEKIKRGEA 277
Query: 117 PQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVD 176
L+ V+ + R + ++E E L EL+ V + GG ++ DL W +
Sbjct: 278 ---LRGAQVVSLRVS--RFRDLPRDEAERLLVELRCAV-KVGGRAGGVVLVVEDLGWAAE 331
Query: 177 QQESNNNNNFNGEIASC--YNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQ 234
+ + +SC Y + H V+EV L C VWL+ +YQ+YM+C+
Sbjct: 332 FWAARAESGRARWPSSCCYYCAVEHAVAEVRALA--CRGGDG--VWLIGYGTYQSYMRCR 387
Query: 235 MRQPPLEIQWALQAVSIPSGGLGLSL 260
QP LE W LQ +++P+G L LSL
Sbjct: 388 AGQPSLETLWGLQTLAVPAGSLALSL 413
Score = 46.6 bits (109), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 18/77 (23%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS------------------AKKATWFLLQGNDT 519
L L++ VPWQ + + I +++C+S AK+ TW L G D
Sbjct: 618 LCSALEKEVPWQAEIVPEIASTVLQCRSGMARRRDAAASSSRPPAFAKEDTWMLFHGGDA 677
Query: 520 IGKRRLALSIAESVFGS 536
GK R+A +A VFGS
Sbjct: 678 DGKVRVARELARLVFGS 694
>gi|357142495|ref|XP_003572591.1| PREDICTED: uncharacterized protein LOC100844688 [Brachypodium
distachyon]
Length = 841
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 158/639 (24%), Positives = 253/639 (39%), Gaps = 132/639 (20%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSS +K ++E + SS+ G+ + S SSS F N
Sbjct: 150 MREAGFSSPQVKANVEHAVVSSI-----EGTKGLTNPNPSSSSSPPTEFEN--------- 195
Query: 61 LFSSQKPASVSK---------EDIKLVFEVFL--RKKRRNTVIVGDCLSITDALVFDFMG 109
KPA + K ED+ + + R KRR ++V + S +A +
Sbjct: 196 -----KPAGIGKLPVVEQVREEDVAAILDCLASGRSKRR-VMVVAESSSAAEAAAMAAVD 249
Query: 110 RVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKV--DSLTSVGG--GAI 165
R++ P + V F R +E+ E L EL+R V DS + GG G +
Sbjct: 250 RIKEKAAPPRVISISVSMF-------RDALREDAERRLGELRRAVARDSKAAAGGSRGVV 302
Query: 166 IYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATA 225
+ DL+W + Y + H V EV L C VWL+A
Sbjct: 303 LVVEDLRWAAEFWAGRVGRRSASSSCYYYCAVEHAVGEVRALA--CRGEGDG-VWLVAYG 359
Query: 226 SYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPF 285
SYQ YM+C+ P LE W +Q ++IPSG L LSL S+ V +S + S S T P
Sbjct: 360 SYQAYMRCRAGNPSLESLWGIQPLAIPSGSLALSLSSADV-DSAIALSHRQS----TSPA 414
Query: 286 AIK--------EEEDHKLNCCAECTSNYEEEAQLFKSGQKKL-------LPPWLQPHSSS 330
+ + +CC +C++ + + + + + +PPWL+
Sbjct: 415 CLSLLDASCSGQPMAAVSSCCGDCSATNPD--AMRSASHRSIVPSSSTNIPPWLR----- 467
Query: 331 NANQKDELVEMRRKWNR-SCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQ 389
+ +D+ + + W+ +C R TQ FS+ + + S++ Y P+ P
Sbjct: 468 --HCRDQELPPCKNWSSTTCGGSASQRTTQLNFSTAVSPSSSVSSYEQYYNMHQPYQP-- 523
Query: 390 SSIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLK 449
I D + +P S +R + S + + + +R DS
Sbjct: 524 -WIVADVH---------EPSKHS-----WRAKCSFDNVLMDEASKSR---------DSSA 559
Query: 450 SNEGKEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKS---- 505
SN G + + + + + L L++ VPWQ + + I ++ C+S
Sbjct: 560 SNGG---SVEVGCRSRSFKEVSAENLKVLCGALEKEVPWQKEIVPEIASTVLRCRSGMAK 616
Query: 506 ------AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDM-------------- 545
AK+ TW L G DT GK R+A +A VFGS ID
Sbjct: 617 RRDAMKAKEETWMLFLGGDTDGKLRVARELAGLVFGSRKSFVSIDADACSPARSDSFVEQ 676
Query: 546 ----RKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLAD 580
KR+ +SH E L +++ V+L+E ++ D
Sbjct: 677 KHHGSKRHRSEASHLERLFEAVRDNPHRVILMEGVERVD 715
>gi|168026262|ref|XP_001765651.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683077|gb|EDQ69490.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1118
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 143/326 (43%), Gaps = 66/326 (20%)
Query: 73 EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAP 132
ED+ + +FLR + +N ++VGD ++ +A+ D R++ G+VP +L+ ++ +
Sbjct: 133 EDVLNILNIFLRPRIKNVILVGD-ITAANAVNSDLALRIKNGNVPAQLQGLQILDPLLSS 191
Query: 133 VTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVD-QQESNNNNNFNGEIA 191
+ + E++ L EL + V + GAI++ GDL+W + Q +NF
Sbjct: 192 SSFGYCSSLEMDQKLAELSKIVGE--CMPAGAILHIGDLQWLAEPMQLKKGPSNF----- 244
Query: 192 SCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSI 251
C P SE+ +L+ +S+R+W + A+ QT+ + Q+ P L W LQ V +
Sbjct: 245 -C--PAQRTASELRQLLI---RHASSRLWFVGVATPQTFSRLQVLYPSLIADWGLQPVPL 298
Query: 252 PSGGLG----------------LSLH---SSSVHESRLTFSQNPSQVWETKPFAIKEEED 292
G SLH S+SV R+T Q+ V + P +
Sbjct: 299 SIGSQPDFLSRLTNCTRVVHDLHSLHSTPSASVESPRVTLMQDTRPVSNSGP-------N 351
Query: 293 HKLNCCAECTSNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQK----------------- 335
+ CC EC + +EEE +L + L H S ++
Sbjct: 352 ERFQCCVECLAKFEEERRLIHEHES------LSLHLSLTGDEASFGVVNGGTGQVGKESV 405
Query: 336 -DELVEMRRKWNRSCHSLHQGRHTQS 360
+L+++R KW ++C LH G +QS
Sbjct: 406 VQQLMQLREKWQKNCRMLH-GDSSQS 430
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 76/173 (43%), Gaps = 32/173 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS---------AKKATWFLLQGNDTIGKRRLALS 528
LYK L + VPWQ ++ I +++C+S AK TW LL G D + K +A +
Sbjct: 681 LYKGLMQRVPWQAAAVAGIATTVMKCRSGMGSFRGATAKTDTWLLLLGPDPVAKVAIAKA 740
Query: 529 IAESVFGSTDLLFHID--------MRKRNDGVSSHSEMLMGTLKNYEKL----VVLVEDI 576
+AE VFG L HI + + G+ + + L +L V+L+EDI
Sbjct: 741 LAEMVFGGERSLLHIGFADGSPARLEGDDSGMRYRGKTPLDRLAEAVRLKPSSVILLEDI 800
Query: 577 DLADPQFIKILADGFETENFGKVIFVLTKGDSSNYEERIENQDSVINMTLKVN 629
D A F + E GK+ DSS E + N S+I MT V
Sbjct: 801 DKATSVFKNNVVRAMER---GKL------ADSSMREVSLSN--SIIVMTTSVG 842
>gi|326498641|dbj|BAK02306.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 853
Score = 97.1 bits (240), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 120/271 (44%), Gaps = 38/271 (14%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSS+ +K+++E + +SS SPS A + + ++ A
Sbjct: 167 MREAGFSSSQVKDNVEKAVSSS-----------------SPSLERAANMKTTGSIKESRA 209
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQEL 120
S +D V E RR V+VG+ +A V M +V + EL
Sbjct: 210 -------KSAGSDDAMRVLECMASGTRRCLVVVGEG---AEAAVKAVMDKVSK----SEL 255
Query: 121 KQTH---VIKFHFAPVTL---RFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWT 174
H + F P+++ R +EEV+ ++L+ V + G G + DL +
Sbjct: 256 HHRHHERLKSVQFVPLSVTSFRHAAREEVDAKTSDLRALVCEARAAGKGVALVVEDLAYA 315
Query: 175 VDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQ 234
D + +G + Y P+ H V EV LVS + + R WL+ AS +MKC+
Sbjct: 316 ADAWHKRRGEHVHGGQSQYYCPVEHAVMEVSGLVSGDSGSGGGRFWLLGFASRTVFMKCR 375
Query: 235 MRQPPLEIQWALQAVSIPSGG-LGLSLHSSS 264
+ QP LE W + + +P GG L LSL +S
Sbjct: 376 LGQPSLEAVWGIHPLVVPDGGSLALSLSCTS 406
>gi|357167553|ref|XP_003581219.1| PREDICTED: uncharacterized protein LOC100831510 [Brachypodium
distachyon]
Length = 839
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/267 (29%), Positives = 120/267 (44%), Gaps = 29/267 (10%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSST IK ++E + SS ++ +P +PSSS A P +
Sbjct: 161 MREAGFSSTQIKANVEQTVCSST----AATSAPPRQNP-NPSSSTATTTSKPQETTKAKL 215
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKKR--RNTVIVGDCLSITDALVFDFMGRVERGD--- 115
P ED+ +V + R R V+V + +A V + +V++ D
Sbjct: 216 PL----PGQARDEDVAVVLDCLASSARSKRRVVVVAESTESAEATVRAVVDKVKKADQSD 271
Query: 116 -VPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWT 174
+P L+ V+ + + R M +EE E L+EL+ V S GG ++ DLKW
Sbjct: 272 ALP--LRGAQVVSLRVS--SFRDMPREEAERRLSELRCLVKSRGH-GGHVLLVVEDLKWA 326
Query: 175 VDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQ 234
+ + G Y + H+V+EV L WL+ +YQTY KC+
Sbjct: 327 AE--------FWAGRRPGYYCAVEHVVTEVRALACGGGGEQHALTWLVGFGTYQTYTKCR 378
Query: 235 MRQPPLEIQWALQAVSIPSG-GLGLSL 260
QP LE W LQ +++P+G L LSL
Sbjct: 379 TGQPSLESLWGLQTLTVPAGCSLALSL 405
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 33/136 (24%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS-------------AKKATWFLLQGNDTIGKRR 524
L L++ VPWQ + I +++C+S AK+ TW G D GK +
Sbjct: 589 LCVALEKEVPWQKEIAPEIASTVLQCRSGISKRRDKSRSTDAKEETWMFFLGGDVDGKEK 648
Query: 525 LALSIAESVFGSTDLLF------------------HIDMRKRNDGVSSHS--EMLMGTLK 564
+A +A VFGS H R R ++ + E L +
Sbjct: 649 VARELANLVFGSHKNFMSIKPAGASSPSASCSTEEHRSKRPRTSAAATGACLEQLYEAIN 708
Query: 565 NYEKLVVLVEDIDLAD 580
V+++EDI+ AD
Sbjct: 709 ENPHRVIILEDIEQAD 724
>gi|242066778|ref|XP_002454678.1| hypothetical protein SORBIDRAFT_04g035490 [Sorghum bicolor]
gi|241934509|gb|EES07654.1| hypothetical protein SORBIDRAFT_04g035490 [Sorghum bicolor]
Length = 955
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 103/392 (26%), Positives = 159/392 (40%), Gaps = 88/392 (22%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREA FSST +K + S P++ +A F++
Sbjct: 161 MREASFSSTAVK-------------------AAMLRSLSDPAAPDAGAFVSARVM----- 196
Query: 61 LFSSQKPASVSKEDIKLVFEVFL-RKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQE 119
+ AS +E+ L R K+RN V+VGD + + DA+V + + ++R Q
Sbjct: 197 ----HRQASHGREEEVAKVVEVLKRGKKRNPVLVGDTVDV-DAVVQEVITLIQR----QR 247
Query: 120 LKQTHVIKF--HFA-PVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVD 176
L VI F F PV M + ++ + EL V S +S G ++ G+L+W V+
Sbjct: 248 LGNARVISFPKEFGDPVD---MDRAQLTAKIKELGETVRSASS-SAGVVVNLGNLQWLVE 303
Query: 177 QQ-ESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQM 235
++ S+ + V E+ +++ + + RVW++ TA+ TYMKCQ+
Sbjct: 304 EKCASHQGEQQEKRRDVVLDTARAAVDEMARVL-NLSGEGEHRVWVIGTATCATYMKCQV 362
Query: 236 RQPPLEIQWALQAVSI---------------PSGGLGLSLHSSSVHESRLTFSQNPSQVW 280
P LE +W LQAV I PS G + SSSV + +P Q
Sbjct: 363 YHPGLESEWDLQAVPITPRPPPPPPPPLGLSPSVGANRGILSSSVEVLSTAMTSSPMQ-- 420
Query: 281 ETKPFAIKEEEDHKLNCCAECTSNYEEEAQLFKSGQKKLLPP------WLQ--------P 326
+ C+ C YE E S ++ P WLQ P
Sbjct: 421 ------------RAPSLCSACIEGYERERAEMASSERAPCPAEQPMSLWLQIGTPSSGRP 468
Query: 327 HSSSNANQKD-ELVEMRRKWNRSCHSLH-QGR 356
+ A +K E+ E+RR+W C LH GR
Sbjct: 469 APADRAQEKAREVDELRRRWRDRCAQLHSHGR 500
>gi|218194552|gb|EEC76979.1| hypothetical protein OsI_15283 [Oryza sativa Indica Group]
Length = 845
Score = 96.3 bits (238), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 69/107 (64%), Gaps = 4/107 (3%)
Query: 73 EDIKLVFEVFLRK--KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHF 130
ED++ V EV +RK +R N V+VGD +S+ +A+ + + R+E GDVP EL H++K
Sbjct: 171 EDVRAVLEVMVRKQGRRTNPVVVGDSVSMAEAVAGELLLRLEGGDVPDELAGAHLLKLQL 230
Query: 131 APVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQ 177
+ V +R M + +V+ EL+R VD++ GG ++Y GDL+W +D+
Sbjct: 231 SYVHVRLMSRADVDAKAAELRRSVDAVKR--GGLVVYVGDLRWALDE 275
Score = 83.2 bits (204), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 139/346 (40%), Gaps = 67/346 (19%)
Query: 275 NPSQVWETKPFAIKEEEDHKLNCCAECTSNYEEEAQLF-------KSGQKKL--LPPWLQ 325
+P +P A E +D L C EC+ NYE EA + G + LP WL
Sbjct: 427 SPFVAMAAEPAARDELDDKLLVLCTECSHNYEREASAVKAEAAADEEGPRAAGNLPGWLV 486
Query: 326 PHSSSNANQKDELVEMRRKWNRSCHSLH---QGRHTQSQ-FSSNLYNNQSLTGKSCSYAS 381
P +++ L+E++RKW+R C LH G Q F + Y N +S
Sbjct: 487 PEPP----KENYLIELKRKWSRLCRKLHLCGGGDPCSGQSFGAGAYGN--------GPSS 534
Query: 382 TYPWWPSQSSIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGV 441
PWW S S KP S+A F + +
Sbjct: 535 LLPWW---------SASCLLPNGGGKP-----SIAGF--------LGMEALRWSPPAAAA 572
Query: 442 EPRLDSLKSNEGKEVKITLALGNSELSDSAKLQRS---------DLYKVLQENVPWQFDS 492
P L SL+ E ++V LALG+ LSDSA +L + L++NVPWQ +
Sbjct: 573 LPSLSSLREPECQDVTTALALGSLPLSDSASSSGGGGGDGAAARELERRLRKNVPWQRAA 632
Query: 493 IHSIVEVLVECKSAKKAT-----WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547
+ I + + + T W LL+G+D RR+A IAE+ S D + +
Sbjct: 633 VAEIADAVAAGARSGNGTKGAGVWLLLKGSDHAAVRRVAAVIAETHCCSADRVVVVSADP 692
Query: 548 RNDGVSS--HSEMLMGTLKNYE----KLVVLVEDIDLADPQFIKIL 587
G + S+++ KLV++V+D++ A ++ L
Sbjct: 693 NKFGCADDFRSDVVARASMAAAAGGNKLVLVVDDVERAPQHVVECL 738
>gi|224091889|ref|XP_002309387.1| predicted protein [Populus trichocarpa]
gi|222855363|gb|EEE92910.1| predicted protein [Populus trichocarpa]
Length = 458
Score = 95.9 bits (237), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 134/273 (49%), Gaps = 46/273 (16%)
Query: 1 MREAGFSSTTIKNHIEDS-SASSVFQCYTSSGGGV-FSSPCS---PSS-SEAHHFINPNT 54
MREA FSS +K IE S +AS+ +SG G+ F +P + P+ + + ++NP
Sbjct: 148 MREASFSSPAVKATIEQSLNASTNSNSAANSGIGMGFRAPGAVAVPAPVTNRNLYVNPRL 207
Query: 55 FWQNHALFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVER- 113
+ +Q+ E++K V ++ L+ K+RN V+VG+ S +V + + R+E
Sbjct: 208 QQGSVGQSGAQR-----NEEVKKVIDILLKSKKRNPVLVGE--SEPQMVVQEVLKRIENK 260
Query: 114 --GDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTEL----KRKVDSLTSVGGGAIIY 167
GD P LK HVI F+ K ++ + EL + ++ +L GG I+
Sbjct: 261 EVGDWP--LKNVHVIHLEKG-----FLDKAQIAAKIVELGGLIETRIRNLDC--GGVILD 311
Query: 168 TGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGK---------LVSDCNSASSTR 218
GDLKW V+QQ S + + +VS+VG+ L + +
Sbjct: 312 LGDLKWLVEQQVSLTGSGGVQQ--------QQIVSDVGRSAVAEMRKLLGRFGEGSGGGK 363
Query: 219 VWLMATASYQTYMKCQMRQPPLEIQWALQAVSI 251
VWL+ TA+ +TY++CQ+ P +E W LQAV I
Sbjct: 364 VWLIGTATCETYLRCQVYHPSMENDWDLQAVPI 396
>gi|413939265|gb|AFW73816.1| hypothetical protein ZEAMMB73_717603 [Zea mays]
Length = 953
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 130/312 (41%), Gaps = 69/312 (22%)
Query: 84 RKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEV 143
R K+RN V+VGD + + DA+V + + ++R Q L VI F L M + +
Sbjct: 218 RAKKRNPVLVGDTVDV-DAVVQEVVTLIQR----QRLGNARVISFPKEFGDLVDMDRARL 272
Query: 144 EMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVD----------QQESNNNNNFNGEIASC 193
+ EL V S S G ++ G+L+W V+ QQE + + A+
Sbjct: 273 TAKVKELGEAVRS-ASASAGVVVNLGNLQWLVEERCAAPRGEQQQEKRRDVVLDTARAA- 330
Query: 194 YNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSI-- 251
V+E+ +++ + + RVW++ TA+ TY+KCQ+ P LE +W LQAV I
Sbjct: 331 -------VAEMARVL-NLSGEGEHRVWVIGTATCATYLKCQVYHPALESEWDLQAVPITP 382
Query: 252 -------------PSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNCC 298
PS G+ + SSSV E A+ + C
Sbjct: 383 RPPPPPPPPLGLSPSAGVNRGILSSSV---------------EVLSTAMTSPMQRAPSLC 427
Query: 299 AECTSNYEEEAQLFKSGQKKLLPP------WLQ---PHSSSNANQKDELV----EMRRKW 345
+ C YE E S ++ P WLQ P S A++ E E+RR+W
Sbjct: 428 SACAEGYERERAEMASSERAPCPAEQPMSQWLQIGTPSSGRPADRAQEKAREADELRRRW 487
Query: 346 NRSCHSLH-QGR 356
C LH GR
Sbjct: 488 RDRCAQLHSHGR 499
>gi|116310805|emb|CAH67595.1| OSIGBa0092M08.7 [Oryza sativa Indica Group]
gi|218194827|gb|EEC77254.1| hypothetical protein OsI_15844 [Oryza sativa Indica Group]
Length = 876
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 120/289 (41%), Gaps = 58/289 (20%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSST +K ++E + C T++ +S+ + NP+
Sbjct: 159 MREAGFSSTQVKANVEQA-------CSTTTA----------TSAPPNQNPNPSCTGAAAT 201
Query: 61 LFSSQKPASVSKEDIKL-VFEVFLRKKRRNTVIVGDCLS--------------------- 98
++ PA + KL + ++ R + + V DCL+
Sbjct: 202 ATATTSPAHPPEIKAKLPLLDMLARDE--DIAAVLDCLAPAAAGGRGGGGSRRRVVVVAE 259
Query: 99 ---ITDALVFDFMGRVERGDVPQE--LKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRK 153
+A + RV RG+ Q L+ V+ + + R M +EE E L EL+
Sbjct: 260 STAAAEATARAAVDRVRRGEAKQHDALRGAQVVNLRVS--SFRDMPREEAERRLAELRCL 317
Query: 154 VDSLTSVGGGAIIYTGDLKWTVD--QQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDC 211
V S G ++ DLKW D Y + H+V+EV L S C
Sbjct: 318 VKSR---GARVLLVVEDLKWAADFWAAAHTGARRVGSGGGGYYCSVEHVVTEVRALAS-C 373
Query: 212 NSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSL 260
+ +WL+ +YQTYMKC+ P LE W LQ +++P+G L LSL
Sbjct: 374 DGG----IWLVGFGTYQTYMKCRAGHPSLESMWGLQTLAVPAGSLALSL 418
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 86/217 (39%), Gaps = 55/217 (25%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS-------------AKKATWFLLQGNDTIGKRR 524
L L++ VPWQ + + + +++C+S AK+ TW G D GK R
Sbjct: 619 LCAALEKEVPWQKEIVPEVASAVLQCRSGIAKRRDRSRSTEAKEETWLFFLGGDAHGKER 678
Query: 525 LALSIAESVFGSTDLLFHIDM--------------------RKRNDGVSSHSEMLMGTLK 564
+A +A VFGS + + R R SS SE + L
Sbjct: 679 VARELAGLVFGSRKSFLSVKLGASSSSPSASGSTEDHHRSKRPRTTTRSSASEAYLERL- 737
Query: 565 NYEKL------VVLVEDIDLADPQF---IK-------ILADGFETENFGKVIFVLTKGDS 608
Y+ + V+L+ED++ D ++ +K + + + G I +L+
Sbjct: 738 -YDAVSENPHRVILIEDVEQGDHRWQVGVKEAIDRGVLRSQAGDEVGVGDAIIILS---C 793
Query: 609 SNYEERIENQDSVINMTLKVNERNQNF-DHKRKAEWE 644
++E R ++N +KV + N DH K E E
Sbjct: 794 ESFEARSRAGSPLMNKKMKVEKEEANTSDHDHKLEIE 830
>gi|125560773|gb|EAZ06221.1| hypothetical protein OsI_28463 [Oryza sativa Indica Group]
Length = 682
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 161/718 (22%), Positives = 284/718 (39%), Gaps = 139/718 (19%)
Query: 219 VWLMATASYQTYMKCQMRQPPLEIQWALQAVSIP----------------SGGLGLSLHS 262
VW + TA+ TY++C++ P +E +W L AV I GG G+ L+S
Sbjct: 13 VWAVCTAACTTYLRCKVYHPGMEAEWDLHAVPIARGGAPIAAAAAGSALRPGGSGI-LNS 71
Query: 263 SSVHESRLTFSQNPSQVWET----KPFAIKEEEDHKLNCCAECTSNYEEEAQLFKSGQ-- 316
S L+ + P V T P + K C C +YE E ++ Q
Sbjct: 72 SM---GMLSPALRPMPVTPTALRWPPPGSDQSPAAKPAMCLLCKGSYERELAKLEAEQTD 128
Query: 317 ---------KKLLPPWLQPHSSSNANQKDELV------EMRRKWNRSCHSLHQGRHTQSQ 361
K LP WLQ + N ++ EL E+ RKW +C +H
Sbjct: 129 KPASRPEAAKPGLPHWLQLSNDQNKAKEQELKLKRSKDELERKWRETCARIHSACPMAPA 188
Query: 362 FSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSISFAESAMKPHNSSNSVA---KF 418
S L A+ P P + + + + + M P SVA +
Sbjct: 189 LSVPL-------------ATFTPRPPVEPKLGV-ARGAAVPTLKMNPSWEKPSVAPTLEL 234
Query: 419 RRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGKEVKITL-ALGNSELSDSAKLQR-S 476
R+ S ++ + C P G P ++ NE KE L AL ++++ + ++
Sbjct: 235 RKSPPASPVKTDLVLCRLDP-GTNPAVE----NEQKESCEGLTALQKAKIAGISDIESFK 289
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA---------KKATWFLLQGNDTIGKRRLAL 527
L K L E V WQ D+ +I V+++C+S + W L G D GKR++
Sbjct: 290 RLLKGLTEKVSWQSDAASAIAAVVIQCRSGSGKRRNVGTRGDMWLLFVGPDQAGKRKMVN 349
Query: 528 SIAESV---------FGSTDLLFHIDMRKRNDGVSSHSEM--LMGTLKNYEKLVVLVEDI 576
+++E + FG L + N G + + + ++ V+++E I
Sbjct: 350 ALSELMANTRPVVVNFGGDSRLGRVGNDGPNMGFWGKTALDRVTEAVRQNPFSVIVLEGI 409
Query: 577 DLADPQFIKILADGFETE----------NFGKVIFVLTKG------DSSNYEERIENQDS 620
D D + ET + G VIFVLT SN E + ++
Sbjct: 410 DQVDVVVHGKIKRAMETGRLPDSRGREVSLGNVIFVLTTNWVPEELKGSNVETLLRGEER 469
Query: 621 VINMT-----LKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTID-NVSSGNKK 674
++ T L+++ ++ H +A+W + + E + +++D N++ G
Sbjct: 470 MLESTSSSWQLELSIGDKQVKH--RADWLCDDVRPAKLAKELSSSHGLSLDLNLAVGALD 527
Query: 675 DFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRF 734
D + S N+ D+++ E EQ+ G+L+ + R + PA + L+L+ +
Sbjct: 528 DT--EGSHNSSDVSV-------EQEQEKGQLA-----VKR---STPAPGSDILELVDDAI 570
Query: 735 VFNRNSSNDGK--ITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSLF 792
VF + +T AK F+ + + +F ++E + + ++GS + +
Sbjct: 571 VFRPVDFTPFRKTVTDCISAK----FESVMGSSS--SFRIDEDAV-DWMVGSVWLTDEKI 623
Query: 793 EKWLKEVFQTSLEAV--KIGGKGGGIEIRLCFGCKNDKVFANYGFGDSCLPKKIQIAL 848
E W ++V + S+E + + G IRL K +G G LP + IA+
Sbjct: 624 EDWAEKVLKPSIERLWHNVKHDSGRSIIRLT--AVAAKALPRWGGGREGLPVAVTIAI 679
>gi|413918279|gb|AFW58211.1| hypothetical protein ZEAMMB73_670982 [Zea mays]
Length = 862
Score = 85.9 bits (211), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 122/264 (46%), Gaps = 15/264 (5%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSST +K ++E + SS T++ S +PSSS A P + +
Sbjct: 159 MREAGFSSTQVKANVEQAVCSSTTTTSTAAAATAPSKNPNPSSSAATAS-PPQEAAKGNK 217
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQE- 119
L Q ED+ V + + +R V++ + + +A M +++ + +
Sbjct: 218 LPLHQ----ARDEDVAAVLDCLASRSKRRVVVIAESAAAAEATAHAAMDKIKSAEAKHDA 273
Query: 120 LKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQE 179
L+ V+ + + R M +EE E L EL+ V G ++ DLKW +
Sbjct: 274 LRGAQVVSVRVS--SFREMAREETERRLGELRCLVRGRR--GQVVVLVVEDLKWAAEFWA 329
Query: 180 SNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPP 239
+ + G Y + H+V+E+ L S + WL+ +YQ Y +C++ QP
Sbjct: 330 GHVVQS--GRRGYYYCSVEHVVTELRALAS---GGGGSLCWLLGFGTYQAYTRCRVGQPS 384
Query: 240 LEIQWALQAVSIPSGGLGLSLHSS 263
LE W LQ +++P+G L LSL+ +
Sbjct: 385 LESLWELQTLTVPAGSLALSLNCA 408
Score = 46.2 bits (108), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS-------------AKKATWFLLQGNDTIGKRR 524
L L++ VPWQ + + + +++C+S AK+ TW L G D GK R
Sbjct: 600 LCGALEKEVPWQKEIVPEVASAVLQCRSGIAKRRDKSRSADAKEETWMLFLGGDADGKER 659
Query: 525 LALSIAESVFG 535
+A +A VFG
Sbjct: 660 VARELARLVFG 670
>gi|219939389|emb|CAM31939.1| heat shock protein-related [Arabidopsis thaliana]
gi|219939391|emb|CAM31940.1| heat shock protein-related [Arabidopsis thaliana]
Length = 249
Score = 85.9 bits (211), Expect = 9e-14, Method: Composition-based stats.
Identities = 59/219 (26%), Positives = 91/219 (41%), Gaps = 46/219 (21%)
Query: 161 GGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKL----VSDCNSASS 216
GGG I+ GDLKW V+Q S P L EVG+ +
Sbjct: 27 GGGVIVDLGDLKWLVEQPSSTQ-------------PPATLAVEVGRTAVVELRRLLEKFE 73
Query: 217 TRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSI----PSGGLGLSLHSSSVHESRLTF 272
R+W + TA+ +TY++CQ+ P +E W LQAVS+ P+ G+ F
Sbjct: 74 GRLWFIGTATCETYLRCQVYHPSMETDWDLQAVSVAAKAPASGV---------------F 118
Query: 273 SQNPSQVWETKPFAIKEEEDHKLNCCAECTSNYEEEAQLFKS----------GQKKLLPP 322
+ + + P + L CC +C +YE E S Q K LP
Sbjct: 119 PRLANNLESFTPLKSFVPANRTLKCCPQCLQSYERELAEIDSVSSPEVKSEVAQPKQLPQ 178
Query: 323 WLQPHSSSNANQKDELVEMRRKWNRSCHSLHQGRHTQSQ 361
WL + + ++ E+++KWN +C LH H +++
Sbjct: 179 WLLKAKPVDRLPQAKIEEVQKKWNDACVRLHPSFHNKNE 217
>gi|38344035|emb|CAE01527.2| OJ991214_12.16 [Oryza sativa Japonica Group]
gi|39545713|emb|CAD40931.3| OSJNBa0033G16.3 [Oryza sativa Japonica Group]
Length = 877
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 124/290 (42%), Gaps = 59/290 (20%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSST +K ++E + C T++ +S+ + NP+
Sbjct: 159 MREAGFSSTQVKANVEQA-------CSTTTA----------TSAPPNQNPNPSCTGAAAT 201
Query: 61 LFSSQKPASVSKEDIKL-VFEVFLRKKRRNTVIVGDCLS--------------------- 98
++ PA + KL + ++ R + + V DCL+
Sbjct: 202 ATATTSPAHPPEIKAKLPLLDMLARDE--DIAAVLDCLAPAAAGGRGGGGSRRRVVVVAE 259
Query: 99 ---ITDALVFDFMGRVERGDVPQE--LKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRK 153
+A + RV RG+ Q L+ V+ + + R M +EE E L EL+
Sbjct: 260 STAAAEATARAAVDRVRRGEAKQHDALRGAQVVSLRVS--SFRDMPREEAERRLAELRCL 317
Query: 154 VDSLTSVGGGAIIYTGDLKWTVDQQESNNNNN---FNGEIASCYNPINHLVSEVGKLVSD 210
V S G ++ DLKW D + + +G Y + H+V+EV L S
Sbjct: 318 VKSR---GARVLLVVEDLKWAADFWAAAHAGARRVGSGGGGGYYCSVEHVVTEVRALAS- 373
Query: 211 CNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSL 260
C+ +WL+ +YQTYMKC+ P LE W LQ +++P+G L LSL
Sbjct: 374 CDGG----IWLVGFGTYQTYMKCRAGHPSLESMWGLQTLAVPAGSLALSL 419
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 86/217 (39%), Gaps = 55/217 (25%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS-------------AKKATWFLLQGNDTIGKRR 524
L L++ VPWQ + + + +++C+S AK+ TW G D GK R
Sbjct: 620 LCAALEKEVPWQKEIVPEVASAVLQCRSGIAKRRDRSRSTEAKEETWLFFLGGDGHGKER 679
Query: 525 LALSIAESVFGSTDLLFHIDM--------------------RKRNDGVSSHSEMLMGTLK 564
+A +A VFGS + + R R SS SE + L
Sbjct: 680 VARELAGLVFGSRKSFLSVKLGASSSSPSASGSTEDHHRSKRPRTTTTSSASEAYLERL- 738
Query: 565 NYEKL------VVLVEDIDLADPQF---IK-------ILADGFETENFGKVIFVLTKGDS 608
Y+ + V+L+ED++ D ++ +K + + + G I +L+
Sbjct: 739 -YDAVSENPHRVILIEDVEQGDHRWQVGVKEAIDRGVLRSQAGDEVGVGDAIIILS---C 794
Query: 609 SNYEERIENQDSVINMTLKVNERNQNF-DHKRKAEWE 644
++E R ++N +KV + N DH K E E
Sbjct: 795 ESFEARSRAGSPLMNKKMKVEKEEANTSDHDHKLEIE 831
>gi|218185280|gb|EEC67707.1| hypothetical protein OsI_35183 [Oryza sativa Indica Group]
Length = 845
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/275 (28%), Positives = 124/275 (45%), Gaps = 23/275 (8%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSS+ +K ++E + +S+ + H +PN+
Sbjct: 165 MREAGFSSSQVKANVEKAVVASLDHANAAG-------------GGGGHAGSPNSGHGGRR 211
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQEL 120
SS A V + ++++ + KR V+ G+ + +A+V M RV + ++
Sbjct: 212 KESSSSRARVDDDAMRVLDCMASGTKRCVVVVGGEGAAAAEAVVKAVMDRVSKAELHH-- 269
Query: 121 KQTHVIKFHFAPVTL---RFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQ 177
+ + F P+++ +EEVE ++L+ V S + G G ++ DL + D
Sbjct: 270 RHERLKNLQFVPLSIASFHGAPREEVEAKASDLRALVRSGCAAGKGVVLVLEDLAYAADA 329
Query: 178 QESNNNNNFNGEIAS---CYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQ 234
+ +N A+ Y P+ H V EV LVS R W++ SYQ YMKC+
Sbjct: 330 WAAASNTRRRAAAATGGQSYCPMEHAVMEVSSLVSG-GGGGGERFWVLGFGSYQVYMKCR 388
Query: 235 MR-QPPLEIQWALQAVSIPSGGLGLSLHSSSVHES 268
QPPLE W L V +P GGL LSL S ++
Sbjct: 389 AAGQPPLEAVWELHPVVVPDGGLALSLTCSEASQA 423
Score = 41.2 bits (95), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK--------------ATWFLLQGNDTIGKR 523
L L+ VP + + I +++C+S K TW L QG D GK+
Sbjct: 590 LCNALESRVPQHSNIVPDIASTVLQCRSGMKKMKLRHKEIIKASSTTWLLFQGRDVDGKK 649
Query: 524 RLALSIAESVFGST 537
+A +A+ VFGS+
Sbjct: 650 AMAQELAKLVFGSS 663
>gi|50251982|dbj|BAD27916.1| heat shock protein-related-like [Oryza sativa Japonica Group]
gi|50252658|dbj|BAD28827.1| heat shock protein-related-like [Oryza sativa Japonica Group]
Length = 917
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 114/265 (43%), Gaps = 24/265 (9%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSST +K ++E + +SS+ T SS S AH P+
Sbjct: 160 MREAGFSSTQVKANVEQAVSSSMEAATTKPQNPNPSS--SSPPPAAHQEAKPSRCIDQ-- 215
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQEL 120
V +ED+ + + + ++ ++V +C + +A + R+ RG+ Q
Sbjct: 216 -------VVVREEDVAAILDCLATRSKKRVMVVAECAAAAEAAARAAVDRIRRGEARQH- 267
Query: 121 KQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGG--AIIYTGDLKWTVD-- 176
Q V+ + R +EE E L EL+ V GGG ++ DL W +
Sbjct: 268 AQAQVVTLAVS--RFRGAPREEAERRLAELRCAVRG----GGGRAVVLVVEDLAWAAEFW 321
Query: 177 -QQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQM 235
+ ++ G Y + H V+EV L VWL+ +YQT ++C+
Sbjct: 322 AGRRPPPSSCGAGAGGYYYCAVEHAVAEVRALACG-GGGGGGGVWLVGHGTYQTNIRCRT 380
Query: 236 RQPPLEIQWALQAVSIPSGGLGLSL 260
P LE W L +++P+G L LSL
Sbjct: 381 GHPSLETLWGLHTLAVPAGSLALSL 405
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 16/76 (21%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSA----------------KKATWFLLQGNDTIG 521
L L++ VPWQ + I ++ C+S K+ TW L G D G
Sbjct: 633 LCGALEKEVPWQKVIVPEIASTVLRCRSGMAAPAMARRSSSCSSSKEHTWMLFLGGDADG 692
Query: 522 KRRLALSIAESVFGST 537
K R+A +A VFGS+
Sbjct: 693 KLRVARELASLVFGSS 708
>gi|62701870|gb|AAX92943.1| transposon protein, putative, mutator sub-class [Oryza sativa
Japonica Group]
gi|77548749|gb|ABA91546.1| transposon protein, putative, Mutator sub-class, expressed [Oryza
sativa Japonica Group]
gi|222615545|gb|EEE51677.1| hypothetical protein OsJ_33029 [Oryza sativa Japonica Group]
Length = 845
Score = 82.8 bits (203), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 129/575 (22%), Positives = 214/575 (37%), Gaps = 114/575 (19%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSS+ +K ++E + +S+ + H +PN+
Sbjct: 165 MREAGFSSSQVKANVEKAVVASLDHANAAG-------------GGGGHAGSPNSGHGGRR 211
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQEL 120
SS A V + ++++ + KR V+ G+ + +A+V M RV + ++
Sbjct: 212 KESSSSRARVDDDAMRVLDCMASGTKRCVVVVGGEGAAAAEAVVKAVMDRVSKAELHH-- 269
Query: 121 KQTHVIKFHFAPVTL---RFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQ 177
+ + F P+++ +EEVE ++L+ V S + G G ++ DL + D
Sbjct: 270 RHERLKNLQFVPLSIASFHGAPREEVEAKASDLRALVRSGCAAGKGVVLVLEDLAYAADA 329
Query: 178 QESNNNNNFNGEI---ASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQ 234
+ +N Y P+ H V EV LVS R W++ SYQ YMKC+
Sbjct: 330 WAAASNTRRRAAAAAGGQSYCPMEHAVMEVSSLVSG-GGGGGERFWVLGFGSYQVYMKCR 388
Query: 235 MR-QPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTF-SQNPSQVWETKPFAIKEEED 292
QPPLE W L V +P GG L+L + S+ T + P+ W PF
Sbjct: 389 AAGQPPLEAVWELHPVVVPDGG--LALSLTCSEASQATHQAAAPTAGW---PF------- 436
Query: 293 HKLNCCAECTSNYEEEAQLFKSGQKKLLPPWLQ---------PHSSSNANQKDELVEMRR 343
+ + +PPWL+ P S Q +L R
Sbjct: 437 ------------VNGAGEAAATTASPTIPPWLRRYQDPDHATPASCGTGLQIQDLWNPMR 484
Query: 344 KWNRSCHS-------LHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDS 396
+ H+ + S ++S NN ++ K + PW
Sbjct: 485 NGSAPHHTSELTLSFSSPSPSSISGYTSCYNNNNMMSSKPWQLEARQPW---------PI 535
Query: 397 NSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGKEV 456
+ AM ++ + + +S S G TR+P+ +E ++LK
Sbjct: 536 HGHEGQRMAMASYHDHHPLDTNPSPESNSVSNSLDGGETRRPKFIELNAENLKI------ 589
Query: 457 KITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-------- 508
L L+ VP + + I +++C+S K
Sbjct: 590 ---------------------LCNALESRVPQHSNIVPDIASTVLQCRSGMKKMKLRHKE 628
Query: 509 ------ATWFLLQGNDTIGKRRLALSIAESVFGST 537
TW L QG D GK+ +A +A+ VFGS+
Sbjct: 629 IIKASSTTWLLFQGRDVDGKKAMAQELAKLVFGSS 663
>gi|115458330|ref|NP_001052765.1| Os04g0416500 [Oryza sativa Japonica Group]
gi|113564336|dbj|BAF14679.1| Os04g0416500, partial [Oryza sativa Japonica Group]
Length = 608
Score = 80.9 bits (198), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 77/156 (49%), Gaps = 15/156 (9%)
Query: 110 RVERGDVPQE--LKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIY 167
RV RG+ Q L+ V+ + + R M +EE E L EL+ V S G ++
Sbjct: 5 RVRRGEAKQHDALRGAQVVSLRVS--SFRDMPREEAERRLAELRCLVKSR---GARVLLV 59
Query: 168 TGDLKWTVDQQESNNNNN---FNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMAT 224
DLKW D + + +G Y + H+V+EV L S C+ +WL+
Sbjct: 60 VEDLKWAADFWAAAHAGARRVGSGGGGGYYCSVEHVVTEVRALAS-CDGG----IWLVGF 114
Query: 225 ASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSL 260
+YQTYMKC+ P LE W LQ +++P+G L LSL
Sbjct: 115 GTYQTYMKCRAGHPSLESMWGLQTLAVPAGSLALSL 150
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 55/217 (25%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS-------------AKKATWFLLQGNDTIGKRR 524
L L++ VPWQ + + + +++C+S AK+ TW G D GK R
Sbjct: 351 LCAALEKEVPWQKEIVPEVASAVLQCRSGIAKRRDRSRSTEAKEETWLFFLGGDGHGKER 410
Query: 525 LALSIAESVFGSTDLLFHIDM--------------------RKRNDGVSSHSEMLMGTLK 564
+A +A VFGS + + R R SS SE + L
Sbjct: 411 VARELAGLVFGSRKSFLSVKLGASSSSPSASGSTEDHHRSKRPRTTTTSSASEAYLERL- 469
Query: 565 NYEKL------VVLVEDIDLADPQF---IKILAD-------GFETENFGKVIFVLTKGDS 608
Y+ + V+L+ED++ D ++ +K D + G I +L+
Sbjct: 470 -YDAVSENPHRVILIEDVEQGDHRWQVGVKEAIDRGVLRSQAGDEVGVGDAIIILS---C 525
Query: 609 SNYEERIENQDSVINMTLKVNERNQNF-DHKRKAEWE 644
++E R ++N +KV + N DH K E E
Sbjct: 526 ESFEARSRAGSPLMNKKMKVEKEEANTSDHDHKLEIE 562
>gi|357143344|ref|XP_003572888.1| PREDICTED: chaperone protein ClpB-like [Brachypodium distachyon]
Length = 962
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 79/329 (24%), Positives = 133/329 (40%), Gaps = 41/329 (12%)
Query: 73 EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAP 132
E++ V +V R +RN V+VGD + DA+V + + ++R Q L VI P
Sbjct: 218 EEVAKVVQVLKRSNKRNPVLVGDTADV-DAVVQEVVTMIQR----QRLGNARVISL---P 269
Query: 133 VTLRFMKKEEVEMNLTELKRKV-DSLTSVGGGAIIYTGDLKW------------TVDQQE 179
L + + ++ + EL + S ++ ++ G+L+W VDQ+E
Sbjct: 270 QELGDLDRSDLVGKIRELGEAIRSSEAALSQSIVVNLGNLEWLVEERRHVGFGDAVDQEE 329
Query: 180 SNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASST------RVWLMATASYQTYMKC 233
+ + A V+E+ +++ C S S RVW++ TA+ TY+KC
Sbjct: 330 AAKRREVVLDTARAA------VAEMARVLEQCGSGSGEGVGERRRVWMIGTATCATYVKC 383
Query: 234 QMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHES--RLTFSQNPSQVWETKPFAIKEEE 291
Q+ P LE QW +QAV + S V+ + S + T +
Sbjct: 384 QVHHPALESQWDIQAVPVAPRPPPTPSPSVGVNRGILSSSVEVLSSAMSTTGATSTHRSA 443
Query: 292 DHKLNCCAECTSNYEEEAQLFKSGQKKLLPPWLQ-----PHSSSNANQKDELVEMRRKWN 346
CA C Y+ E + + WLQ P + + E E+RR+W
Sbjct: 444 PGGAGMCAACVDGYDRERAEMMPPSEHTMSRWLQIGTPAPAARPPFDVAREADELRRRWL 503
Query: 347 RSCHSLH-QGRHTQSQFSSNLYNNQSLTG 374
C LH R + + + +N S+ G
Sbjct: 504 DRCAQLHSHARPAAAAVTCSEWNGASILG 532
>gi|414587306|tpg|DAA37877.1| TPA: hypothetical protein ZEAMMB73_032476 [Zea mays]
Length = 928
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 118/271 (43%), Gaps = 35/271 (12%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MR+AGFSST +K ++E A ++ +P +PSSS P
Sbjct: 220 MRDAGFSSTQVKANVEQ--AVCSSSTMATAAAAPSKNP-NPSSSATTTSPPPKEAKAKPP 276
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQE- 119
L + ED+ V + + +R V++ + + +A+ + +++RG+V E
Sbjct: 277 LALHHQ---ARDEDVAAVLDCLASRSKRRVVVIAESAAAAEAMAHAAVDKIKRGEVKHEH 333
Query: 120 --LKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVG--GGAIIYTGDLKWTV 175
L+ V+ + + R M +EE E L EL+ L G ++ DLKW
Sbjct: 334 DALRGAQVVSLRVS--SFREMPREEAERRLGELR----CLVKQGRRQRVVLVVEDLKWAA 387
Query: 176 ------DQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQT 229
D Q + Y + H+V+E+ L S + WL+ +YQ
Sbjct: 388 EFWAGHDGQSGRRGGYY-------YCAVEHVVNELRALAS-----GGSLCWLLGFGTYQA 435
Query: 230 YMKCQMRQPPLEIQWALQAVSIPSGGLGLSL 260
Y KC++ QP LE W LQ +++P+G L LSL
Sbjct: 436 YTKCRVGQPSLESLWGLQTLTVPAGSLALSL 466
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 13/79 (16%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS-------------AKKATWFLLQGNDTIGKRR 524
L L++ VPWQ + I + +++C+S AK+ TW L G D GK R
Sbjct: 666 LCGALEKEVPWQKEIIPEVASAVLQCRSGIAKRRDKSRSADAKEETWMLFLGGDADGKER 725
Query: 525 LALSIAESVFGSTDLLFHI 543
+A +A VFGS D I
Sbjct: 726 VARELASLVFGSRDSFLAI 744
>gi|295829849|gb|ADG38593.1| AT3G52490-like protein [Capsella grandiflora]
Length = 160
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 11/151 (7%)
Query: 63 SSQKP------ASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDV 116
SS KP V ED+ V + KKRRN VIVG+CL+ D +V M +V++ +V
Sbjct: 12 SSSKPKEGKLLTPVRNEDVMNVINSLVDKKRRNFVIVGECLATVDGVVKTVMEKVDKKEV 71
Query: 117 PQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVD 176
P+ LK I F+ + + +VE L EL+ V S VG G I+ GDL W V+
Sbjct: 72 PEALKDVKFITLSFS--SFGQPSRADVEHKLEELETLVRS--CVGKGVILNLGDLNWFVE 127
Query: 177 QQESNNNNNFNGEIASCYNPINHLVSEVGKL 207
+ + + +N S Y + H++ E+GKL
Sbjct: 128 SRTRGSYSVYNNN-XSNYCVVEHMIMEIGKL 157
>gi|115449139|ref|NP_001048349.1| Os02g0788600 [Oryza sativa Japonica Group]
gi|47497764|dbj|BAD19864.1| 101 kDa heat shock protein-like [Oryza sativa Japonica Group]
gi|113537880|dbj|BAF10263.1| Os02g0788600 [Oryza sativa Japonica Group]
Length = 965
Score = 75.9 bits (185), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 154/383 (40%), Gaps = 72/383 (18%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREA FSST +K + S S P +P S ++N
Sbjct: 157 MREASFSSTAVKAAMLRS----------------LSDPAAPDSGV---YVNARVL----- 192
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQEL 120
+ S +E++ V EV R K+RN V+VGD + + DA+V + + ++R Q L
Sbjct: 193 ----HRQVSHREEEVNKVVEVLKRGKKRNPVLVGDTVDV-DAVVQEVVTMIQR----QRL 243
Query: 121 KQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDS----LTSVGGGAIIYTGDLKWTVD 176
VI F L + + E+ + EL + S S G ++ G+L+W V+
Sbjct: 244 GNARVISFQREFGDLVDLDRAELAAKIKELGEAIRSELLSPASRSAGVVVNLGNLQWLVE 303
Query: 177 Q-------QESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQT 229
+ QE + + A+ V+E+ +++ + RVW++ TA+ T
Sbjct: 304 ERCVAPGEQEKRRDVVLDTARAA--------VAEMARILRQ-SGEREHRVWVIGTATCAT 354
Query: 230 YMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQN---PSQVWETKPFA 286
Y+KCQ+ P LE +W LQAV I S + S ++ S +
Sbjct: 355 YLKCQVYHPSLESEWDLQAVPITPRPPPPPPSSLGLSPSVNGVNRGILSSSVEVLSSAMT 414
Query: 287 IKEEEDHKLNCCAECTSNYEEEAQLFKS--------GQKKLLPPWLQPHSSSNA------ 332
+ + C+ C YE E S ++ + WLQ + S+A
Sbjct: 415 TSAMQSRSPSLCSACLDGYERERADMASSPGCGALHATEQPMSQWLQIGTPSSARPPFDR 474
Query: 333 --NQKDELVEMRRKWNRSCHSLH 353
++ E E+RR+W C LH
Sbjct: 475 AQDKAREADELRRRWLDRCAQLH 497
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 63/296 (21%), Positives = 119/296 (40%), Gaps = 61/296 (20%)
Query: 456 VKITLALGNSELSDSAKLQRSD-----LYKVLQENVPWQFDSIHSIVEVLVECKSAKKA- 509
V LALG + + S D L K L E V WQ ++ ++ + + +S ++
Sbjct: 547 VDTDLALGPAASTASRPPAYCDTDEKLLVKRLTEAVRWQPEAAAAVAAAITKARSGERKR 606
Query: 510 ---------TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLM 560
TW L G+D GK ++A +++ SVFG+ + + S +
Sbjct: 607 RGMGPTRADTWVLFSGHDVAGKTKMAEALSMSVFGTNAVALRLAGNGGEPIASCRGRTAL 666
Query: 561 GTL-----KNYEKLVVL-----VEDIDLADPQFIKILADGFETENFGK-------VIFVL 603
+ N +++VL +D + ++ + G ++ G+ + V+
Sbjct: 667 DCVADAIRANPLRVIVLDGFDHHDDDRVVQASILRAVESGRLVDSRGRDVALGEAIFVVM 726
Query: 604 TKGDSSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSV 663
+ D+ +E + DS N+ L+V +N KR+ E + + R+ ++D+ +
Sbjct: 727 SLDDTRRCQEDHQFTDSPWNLELRV----RNNARKRRPEPQPLDGAGDRRLKPRKDSPPL 782
Query: 664 TIDNVSSGNKKDFSRQSSFNTLDLNM---KADDEDDEGEQKPGELSPISSDLTREN 716
+D L+L+M DD+D GE+ SSDLT E+
Sbjct: 783 HLD------------------LNLSMCEDHTDDDDSGGEESRNS----SSDLTVEH 816
>gi|218191719|gb|EEC74146.1| hypothetical protein OsI_09225 [Oryza sativa Indica Group]
Length = 643
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 154/383 (40%), Gaps = 72/383 (18%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREA FSST +K + S S P +P S ++N
Sbjct: 158 MREASFSSTAVKAAMLRS----------------LSDPAAPDSGV---YVNARVL----- 193
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQEL 120
+ S +E++ V EV R K+RN V+VGD + + DA+V + + ++R Q L
Sbjct: 194 ----HRQVSHREEEVNKVVEVLKRGKKRNPVLVGDTVDV-DAVVQEVVTMIQR----QRL 244
Query: 121 KQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDS----LTSVGGGAIIYTGDLKWTVD 176
VI F L + + E+ + EL + S S G ++ G+L+W V+
Sbjct: 245 GNARVISFQREFGDLVDLDRAELAAKIKELGEAIRSELLSPASRSAGVVVNLGNLQWLVE 304
Query: 177 Q-------QESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQT 229
+ QE + + A+ V+E+ +++ + RVW++ TA+ T
Sbjct: 305 ERCVAPGEQEKRRDVVLDTARAA--------VAEMARILRQ-SGEREHRVWVIGTATCAT 355
Query: 230 YMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQN---PSQVWETKPFA 286
Y+KCQ+ P LE +W LQAV I S + S ++ S +
Sbjct: 356 YLKCQVYHPSLESEWDLQAVPITPRPPPPPPSSLGLSPSVNGVNRGILSSSVEVLSSAMT 415
Query: 287 IKEEEDHKLNCCAECTSNYEEEAQLFKS--------GQKKLLPPWLQPHSSSNA------ 332
+ + C+ C YE E S ++ + WLQ + S+A
Sbjct: 416 TSAMQSRSPSLCSACLDGYERERADMASSPGCGALHATEQPMSQWLQIGTPSSARPPFDR 475
Query: 333 --NQKDELVEMRRKWNRSCHSLH 353
++ E E+RR+W C LH
Sbjct: 476 AQDKAREADELRRRWLDRCAQLH 498
>gi|297745889|emb|CBI15945.3| unnamed protein product [Vitis vinifera]
Length = 955
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 150/689 (21%), Positives = 251/689 (36%), Gaps = 154/689 (22%)
Query: 3 EAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHALF 62
EAGF S IK + S V + + +F + S F P F
Sbjct: 152 EAGFRSCDIKIAMIQPPLSPVSRFPRTRCPPIFLCNLTDSDPARRTFSFP---------F 202
Query: 63 SSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQ 122
+ + E+ + + EV RK +N +++G C S DAL V RG
Sbjct: 203 AGVSGSGDGDENSRRIGEVLTRKTGKNPLLIGVCSS--DALRCFADCFVGRGG------- 253
Query: 123 THVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNN 182
++++ + L EL + + G G + G+LK V
Sbjct: 254 ----------------SEDKLGLKLKELGHMAEQYS--GPGIAVNFGELKALV------- 288
Query: 183 NNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATA-SYQTYMKCQMRQPPLE 241
++ GE AS +VS++ L+ + +WLM ++ SY+TY+K + P +E
Sbjct: 289 GDDAPGEAAS------FVVSKLTSLLK-----AHPNLWLMGSSGSYETYLKFLTQFPSIE 337
Query: 242 IQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKE---EEDHKLNCC 298
W L + I S + S S L S P + + P K + + C
Sbjct: 338 EDWDLHLLPITSSRSSVEGFCS---RSSLMGSFVPFAGFFSTPTDFKNPLNSTNQSITLC 394
Query: 299 AECTSNYEEEAQLFKSGQKKL---------LPPWL---QPHSSSNANQ----------KD 336
C E+E G + LP WL +P ++ A+ D
Sbjct: 395 HLCNEKCEQEVSAILKGGSTISLADRYSGTLPSWLLMAEPDTNKGADAVKAKDDGRALND 454
Query: 337 ELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDS 396
+++ +++KW C LH +A YP Q +
Sbjct: 455 KVLGVQKKWYDICQRLH-------------------------HAPPYPKSIFQPVPQIPL 489
Query: 397 NSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGKEV 456
+S +ES + SV+K ++ ++ S+ F+ C + P D S+ V
Sbjct: 490 PVVSESESVNFQSKLAGSVSKSKQVETRSSPWFS--PCPLPNLSLAP--DRTSSSCITSV 545
Query: 457 KITLALGNSELSDSAKLQR----------------------SDLYKVLQENVPWQFDSIH 494
L LG S+S + +R L++ L V WQ ++I
Sbjct: 546 TTDLGLGTLYASNSQETKRLNLQGHKERMNYFSGQMDARDFKSLWRALASKVGWQDEAIC 605
Query: 495 SIVEVLVECKSA---------KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDM 545
+I + + C++ K W G D +GK+R+A ++AE +F S+ L +D+
Sbjct: 606 AISQTVSSCRTGNARRHGSNLKGDIWLSFLGPDKVGKKRIAAALAEIMFRSSKSLVSVDL 665
Query: 546 RKRNDGVSSH--SEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVL 603
++ ++ + G L+ +LVV +E+ID AD L+ T F
Sbjct: 666 GYQHGKFRGKTITDYIAGELRKKPQLVVFLENIDKADLLVQTSLSQAIRTGKF------- 718
Query: 604 TKGDSSNYEERIENQDSVINMTLKVNERN 632
DS E I + V T K RN
Sbjct: 719 --PDSHGREISINHMIFVTTATSKKGNRN 745
>gi|125583956|gb|EAZ24887.1| hypothetical protein OsJ_08665 [Oryza sativa Japonica Group]
Length = 966
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 125/300 (41%), Gaps = 44/300 (14%)
Query: 84 RKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEV 143
R K+RN V+VGD + + DA+V + + ++R Q L VI F L + + E+
Sbjct: 213 RGKKRNPVLVGDTVDV-DAVVQEVVTMIQR----QRLGNARVISFQREFGDLVDLDRAEL 267
Query: 144 EMNLTELKRKVDS----LTSVGGGAIIYTGDLKWTVDQ-------QESNNNNNFNGEIAS 192
+ EL + S S G ++ G+L+W V++ QE + + A+
Sbjct: 268 AAKIKELGEAIRSELLSPASRSAGVVVNLGNLQWLVEERCVAPGEQEKRRDVVLDTARAA 327
Query: 193 CYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIP 252
V+E+ +++ + RVW++ TA+ TY+KCQ+ P LE +W LQAV I
Sbjct: 328 --------VAEMARILRQ-SGEREHRVWVIGTATCATYLKCQVYHPSLESEWDLQAVPIT 378
Query: 253 SGGLGLSLHSSSVHESRLTFSQN---PSQVWETKPFAIKEEEDHKLNCCAECTSNYEEEA 309
S + S ++ S + + + C+ C YE E
Sbjct: 379 PRPPPPPPSSLGLSPSVNGVNRGILSSSVEVLSSAMTTSAMQSRSPSLCSACLDGYERER 438
Query: 310 QLFKS--------GQKKLLPPWLQPHSSSNA--------NQKDELVEMRRKWNRSCHSLH 353
S ++ + WLQ + S+A ++ E E+RR+W C LH
Sbjct: 439 ADMASSPGCGALHATEQPMSQWLQIGTPSSARPPFDRAQDKAREADELRRRWLDRCAQLH 498
Score = 43.1 bits (100), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 120/295 (40%), Gaps = 59/295 (20%)
Query: 456 VKITLALGNSELSDSAKLQRSD-----LYKVLQENVPWQFDSIHSIVEVLVECKSAKKA- 509
V LALG + + S D L K L E V WQ ++ ++ + + +S ++
Sbjct: 548 VDTDLALGPAASTASRPPAYCDTDEKLLVKRLTEAVRWQPEAAAAVAAAITKARSGERKR 607
Query: 510 ---------TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLM 560
TW L G+D GK ++A +++ SVFG+ + + S +
Sbjct: 608 RGMGPTRADTWVLFSGHDVAGKTKMAEALSMSVFGTNAVALRLAGNGGEPIASCRGRTAL 667
Query: 561 GTL-----KNYEKLVVLV-----EDIDLADPQFIKILADGFETENFGK-------VIFVL 603
+ N +++VL +D + ++ + G ++ G+ + V+
Sbjct: 668 DCVADAIRANPLRVIVLDGFDHHDDDRVVQASILRAVESGRLVDSRGRDVALGEAIFVVM 727
Query: 604 TKGDSSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSV 663
+ D+ +E + DS N+ L+V +N KR+ E + + R+ ++D+ +
Sbjct: 728 SLDDTRRCQEDHQFTDSPWNLELRV----RNNARKRRPEPQPLDGAGDRRLKPRKDSPPL 783
Query: 664 TIDNVSSGNKKDFSRQSSFNTLDLNMKAD--DEDDEGEQKPGELSPISSDLTREN 716
+D L+L+M D D+DD G + E SSDLT E+
Sbjct: 784 HLD------------------LNLSMCEDHTDDDDSGGE---ESRNSSSDLTVEH 817
>gi|295829853|gb|ADG38595.1| AT3G52490-like protein [Neslia paniculata]
Length = 158
Score = 73.6 bits (179), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 78/151 (51%), Gaps = 13/151 (8%)
Query: 63 SSQKP------ASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDV 116
SS KP V ED+ V + KKRRN VIVG+CL+ D +V M +V++ DV
Sbjct: 12 SSSKPKEGKLLTPVRNEDVMNVINSLVDKKRRNFVIVGECLATVDGVVRSVMEKVDKKDV 71
Query: 117 PQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVD 176
P+ LK I F+ + + +VE L EL+ V S VG G I+ GDL W V+
Sbjct: 72 PEALKDVKFITLSFS--SFGQPSRADVEHKLEELETLVRS--CVGKGVILNLGDLNWFVE 127
Query: 177 QQESNNNNNFNGEIASCYNPINHLVSEVGKL 207
+ + ++ +N C + H++ E+GKL
Sbjct: 128 SR-TRGSSVYNNNNNYCV--VEHMIMEIGKL 155
>gi|125602736|gb|EAZ42061.1| hypothetical protein OsJ_26621 [Oryza sativa Japonica Group]
Length = 733
Score = 73.2 bits (178), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 168/777 (21%), Positives = 299/777 (38%), Gaps = 126/777 (16%)
Query: 147 LTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIA--SCYNPINHLVSEV 204
+ +L V+ L GG ++ GDLKW VD + + +A +P V
Sbjct: 5 IGDLGAVVERLLGEHGGVVLDLGDLKWLVDGPAAAASEGGKAPVAENGAPSPSIRARRRV 64
Query: 205 GKLVSDCNSASSTRVWLMATASYQTYMK-CQMRQPPLEIQWALQAVSIPSGGLGLSLHSS 263
G+L + + K C + + I A ++ GG G+ L+SS
Sbjct: 65 GRLHGGVHHLPPLQGLPPGDGGGLGPSKPCPIARGGAPIAAAAAGSALRPGGSGI-LNSS 123
Query: 264 SVHESRLTFSQNPSQVWET----KPFAIKEEEDHKLNCCAECTSNYEEEAQLFKSGQ--- 316
L+ + P V T P + K C C +YE E ++ Q
Sbjct: 124 M---GMLSPALRPMPVTPTALRWPPPGSDQSPAAKPAMCLLCKGSYERELAKLEAEQTDK 180
Query: 317 --------KKLLPPWLQPHSSSNANQKDELV------EMRRKWNRSCHSLHQGRHTQSQF 362
K LP WLQ + N ++ EL E+ RKW +C +H
Sbjct: 181 PASRPEAAKPGLPHWLQLSNDQNKAKEQELKLKRSKDELERKWRETCARIHSACPMAPAL 240
Query: 363 SSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSISFAESAMKPHNSSNSVA---KFR 419
S L A+ P P + + + + + M P SVA + R
Sbjct: 241 SVPL-------------ATFTPRPPVEPKLGV-ARGAAVPTLKMNPSWEKPSVAPTLELR 286
Query: 420 RQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGKEVKITL-ALGNSELSDSAKLQR-SD 477
+ S ++ + C P G P ++ NE KE L AL ++++ + ++
Sbjct: 287 KSPPASPVKTDLVLCRLDP-GTNPAVE----NEQKESCEGLTALQKAKIAGISDIESFKR 341
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSA---------KKATWFLLQGNDTIGKRRLALS 528
L K L E V WQ D+ +I V+++C+S + W L G D GKR++ +
Sbjct: 342 LLKGLTEKVSWQSDAASAIAAVVIQCRSGSGKRRNVGTRGDMWLLFVGPDQAGKRKMVNA 401
Query: 529 IAESV---------FGSTDLLFHIDMRKRNDGVSSHSEM--LMGTLKNYEKLVVLVEDID 577
++E + FG L + N G + + + ++ V+++E ID
Sbjct: 402 LSELMANTRPVVVNFGGDSRLGRVGNDGPNMGFWGKTALDRVTEAVRQNPFSVIVLEGID 461
Query: 578 LADPQFIKILADGFETE----------NFGKVIFVLTKG------DSSNYEERIENQDSV 621
D + ET + G VIFVLT SN E + ++ +
Sbjct: 462 QVDVVVHGKIKRAMETGRLPDSRGREVSLGNVIFVLTTNWVPEELKGSNVETLLRGEERM 521
Query: 622 INMT-----LKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTID-NVSSGNKKD 675
+ T L+++ ++ H +A+W + + E + +++D N++ G D
Sbjct: 522 LESTSSSWQLELSIGDKQVKH--RADWLCDDVRPAKLAKELSSSHGLSLDLNLAVGALDD 579
Query: 676 FSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFV 735
+ S N+ D+++ E EQ+ G+L+ + R + PA + L+L+ + V
Sbjct: 580 T--EGSHNSSDVSV-------EQEQEKGQLA-----VKR---STPAPGSDILELVDDAIV 622
Query: 736 FNRNSSNDGK--ITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSLFE 793
F + +T AK F+ + + +F ++E + + ++GS + + E
Sbjct: 623 FRPVDFTPFRKTVTDCISAK----FESVMGSSS--SFRIDEDAV-DWMVGSVWLTDEKIE 675
Query: 794 KWLKEVFQTSLEAV--KIGGKGGGIEIRLCFGCKNDKVFANYGFGDSCLPKKIQIAL 848
W ++V + S+E + + G IRL K +G G LP + IA+
Sbjct: 676 DWAEKVLKPSIERLWHNVKHDSGRSIIRLT--AVAAKALPRWGGGREGLPVAVTIAI 730
>gi|297849012|ref|XP_002892387.1| hypothetical protein ARALYDRAFT_311783 [Arabidopsis lyrata subsp.
lyrata]
gi|297338229|gb|EFH68646.1| hypothetical protein ARALYDRAFT_311783 [Arabidopsis lyrata subsp.
lyrata]
Length = 977
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 126/582 (21%), Positives = 228/582 (39%), Gaps = 97/582 (16%)
Query: 73 EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFH--F 130
E+ + + EV RK ++N ++VG+C + D + + G +P ++ +I
Sbjct: 221 ENSRRIGEVLGRKDKKNPLLVGNCANEALKTFTDSINTGKLGFLPMDISGLSLISIEKEI 280
Query: 131 APVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFN-GE 189
+ + K EE E++ KVD DL V+Q S + N GE
Sbjct: 281 SEILADGSKNEE------EIRVKVD--------------DLGRIVEQNGSKSGIMLNLGE 320
Query: 190 IASCYNPINHLVSEVGKLVSDCNSASSTRVWLMA-TASYQTYMKCQMRQPPLEIQWALQA 248
+ + N + + +SD S ++W + +S +TY K R P +E W L
Sbjct: 321 LKVLTSEANAALENLVSKLSDLLKHQSKKLWFIGCVSSNETYTKLIDRFPTIEKDWDLHV 380
Query: 249 VSIPSGGLGLS---LHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCAECTSNY 305
+ I + S SS+ S + F S + + + + L+ C C Y
Sbjct: 381 LPITASTKPSSQGVYPKSSLMGSFVPFGGFFSSTSDFR-VPLSSTVNQTLSRCHLCNEKY 439
Query: 306 EEEAQLFKSGQKKL---------LPPWLQP---------HSSSNA-----NQKDELVEMR 342
+E L LPPWL+ SS A + ++
Sbjct: 440 LQEVAAVLKASSSLSLADQCSEKLPPWLRAVETKEDKGTTGSSKALDDANTSASQTAALQ 499
Query: 343 RKWNRSCHSLHQGRHTQS------QFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDS 396
+KW+ C S+H HT + Q S+ + Q T KS +++ ++S L
Sbjct: 500 KKWDNICQSIH---HTPAIPKLGFQSVSSQFPVQ--TEKSVRTPTSF----LETSKLL-- 548
Query: 397 NSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGKEV 456
N M+ +S + SC T +F G + + K+ E K
Sbjct: 549 NPPISKPKPMEDLTTSVTNRTVSSPLSCVTTDFGLG-----------VIYASKNQESKTA 597
Query: 457 --KITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKS------AKK 508
K L NS L + + L ++L V WQ +++++I +++ CK+
Sbjct: 598 REKPLLVTLNSSLEHTYQKDFKSLRELLSRKVAWQTEAVNAISQIICGCKTDSTRRNQAS 657
Query: 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR----NDGVSSHS--EMLMGT 562
W L G D +GK+++A++++E FG +D +D + + +
Sbjct: 658 GIWLALLGPDKVGKKKVAMALSEVFFGGQVNCICVDFGAEHCFLDDKFRGKTVVDYITAE 717
Query: 563 LKNYEKLVVLVEDIDLAD-PQFIKI---LADGFETENFGKVI 600
L VVL+E+++ AD P +++ ++ G ++ G+VI
Sbjct: 718 LSRKPHSVVLLENVEKADFPDQMRLSEAVSTGKIRDSHGRVI 759
>gi|414882124|tpg|DAA59255.1| TPA: hypothetical protein ZEAMMB73_924088 [Zea mays]
Length = 786
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 103/265 (38%), Gaps = 32/265 (12%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MREAGFSS +K ++E + SSSE ++
Sbjct: 162 MREAGFSSAEVKANVEKAI----------------------SSSEQSSNTASSSSASPST 199
Query: 61 LFSSQKPASVSKE---DIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVP 117
+ + + + + D V + R +VG+ + + +V M +V +G++
Sbjct: 200 ITKEPRAKADAVQVVGDAARVLDCMASGTNRCVAVVGESAAAAEGVVKAVMDKVSKGELR 259
Query: 118 ---QELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWT 174
Q LK + F A + + +EEVE +L V + G G ++ DL +
Sbjct: 260 RQHQRLKNAQFVPFSAA--SFQRTPREEVEARAGDLCALVRECCAAGKGVVLVLEDLGYA 317
Query: 175 VDQQESN--NNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMK 232
+ + ++ + Y P+ H V E+ LV W++ A+Y Y
Sbjct: 318 AEAWTAALWTRSDRSARGLRHYCPVEHAVMELSSLVRGGGGRDKDMFWVLGFAAYAPYTS 377
Query: 233 CQMRQPPLEIQWALQAVSIPSGGLG 257
C+ QP LE L+ V +P G LG
Sbjct: 378 CRSGQPSLETVLGLRPVVVPDGSLG 402
>gi|242084828|ref|XP_002442839.1| hypothetical protein SORBIDRAFT_08g003680 [Sorghum bicolor]
gi|241943532|gb|EES16677.1| hypothetical protein SORBIDRAFT_08g003680 [Sorghum bicolor]
Length = 814
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 115/273 (42%), Gaps = 25/273 (9%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
MR+AGF+S + ++E + +SS T++ SS+ + + N ++
Sbjct: 172 MRDAGFASAEVNANVEKAVSSSEQSSNTAT-----------SSTASPNTTTNNNPTKDK- 219
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVP--- 117
S+ A D V + R V++G+ + + +V M +V +G++
Sbjct: 220 --ESRAKADDIVGDAVRVLDCMASGTNRCVVVLGETAAAAERVVKAVMDKVSKGELRRRQ 277
Query: 118 -QELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVD 176
+ LK ++ F A + + M +EEVE +L V + G G ++ DL + +
Sbjct: 278 HERLKNAQLVPFSAA--SFQRMPREEVEARAGDLCALVRECCAAGRGVVLVLEDLAYAAE 335
Query: 177 QQESNNNNNFNGEIASC---YNPINHLVSEVGKLVSDCNSASSTR--VWLMATASYQTYM 231
+ + +G A Y P+ H V E+ LV + WL+ + +Y
Sbjct: 336 AWTAASWKRSSGHRAHGLIDYCPVQHAVMELSSLVRGAGGRGRDKGMFWLLGFGASASYT 395
Query: 232 KCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSS 264
C+ QP LE L V +P GGL LSL S
Sbjct: 396 SCRSGQPSLETVLGLHPVVVPDGGLALSLGGDS 428
>gi|295829847|gb|ADG38592.1| AT3G52490-like protein [Capsella grandiflora]
Length = 160
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 77/151 (50%), Gaps = 11/151 (7%)
Query: 63 SSQKP------ASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDV 116
SS KP V ED+ V + KKRRN VIVG+CL+ D +V M +V++ +V
Sbjct: 12 SSSKPKEGKLLTPVXNEDVMNVINSLVDKKRRNFVIVGECLATVDGVVKTVMEKVDKKEV 71
Query: 117 PQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVD 176
P+ LK I F+ + + +VE L EL+ V S VG G I+ GDL W V+
Sbjct: 72 PEALKDVKFITLSFS--SFGQPSRADVEHKLEELETLVRS--CVGKGVILNLGDLNWFVE 127
Query: 177 QQESNNNNNFNGEIASCYNPINHLVSEVGKL 207
+ + + + S Y + H++ E+GKL
Sbjct: 128 SR-TRGSYSVYNNNNSNYCVVEHMIMEIGKL 157
>gi|295829841|gb|ADG38589.1| AT3G52490-like protein [Capsella grandiflora]
gi|295829843|gb|ADG38590.1| AT3G52490-like protein [Capsella grandiflora]
gi|295829845|gb|ADG38591.1| AT3G52490-like protein [Capsella grandiflora]
gi|295829851|gb|ADG38594.1| AT3G52490-like protein [Capsella grandiflora]
gi|345291325|gb|AEN82154.1| AT3G52490-like protein, partial [Capsella rubella]
gi|345291327|gb|AEN82155.1| AT3G52490-like protein, partial [Capsella rubella]
gi|345291329|gb|AEN82156.1| AT3G52490-like protein, partial [Capsella rubella]
gi|345291331|gb|AEN82157.1| AT3G52490-like protein, partial [Capsella rubella]
gi|345291333|gb|AEN82158.1| AT3G52490-like protein, partial [Capsella rubella]
gi|345291335|gb|AEN82159.1| AT3G52490-like protein, partial [Capsella rubella]
gi|345291337|gb|AEN82160.1| AT3G52490-like protein, partial [Capsella rubella]
Length = 160
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 77/151 (50%), Gaps = 11/151 (7%)
Query: 63 SSQKP------ASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDV 116
SS KP V ED+ V + KKRRN VIVG+CL+ D +V M +V++ +V
Sbjct: 12 SSSKPKEGKLLTPVRNEDVMNVINSLVDKKRRNFVIVGECLATVDGVVKTVMEKVDKKEV 71
Query: 117 PQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVD 176
P+ LK I F+ + + +VE L EL+ V S VG G I+ GDL W V+
Sbjct: 72 PEALKDVKFITLSFS--SFGQPSRADVEHKLEELETLVRS--CVGKGVILNLGDLNWFVE 127
Query: 177 QQESNNNNNFNGEIASCYNPINHLVSEVGKL 207
+ + + + S Y + H++ E+GKL
Sbjct: 128 SR-TRGSYSVYNNNNSNYCVVEHMIMEIGKL 157
>gi|222628845|gb|EEE60977.1| hypothetical protein OsJ_14761 [Oryza sativa Japonica Group]
Length = 636
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 194 YNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPS 253
Y + H+V+EV L S C+ +WL+ +YQTYMKC+ P LE W LQ +++P+
Sbjct: 117 YCSVEHVVTEVRALAS-CDGG----IWLVGFGTYQTYMKCRAGHPSLESMWGLQTLAVPA 171
Query: 254 GGLGLSL 260
G L LSL
Sbjct: 172 GSLALSL 178
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 83/215 (38%), Gaps = 51/215 (23%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS-------------AKKATWFLLQGNDTIGKRR 524
L L++ VPWQ + + + +++C+S AK+ TW G D GK R
Sbjct: 379 LCAALEKEVPWQKEIVPEVASAVLQCRSGIAKRRDRSRSTEAKEETWLFFLGGDGHGKER 438
Query: 525 LALSIAESVFGSTDLLFHIDM--------------------RKRNDGVSSHSEMLMGTLK 564
+A +A VFGS + + R R SS SE + L
Sbjct: 439 VARELAGLVFGSRKSFLSVKLGASSSSPSASGSTEDHHRSKRPRTTTTSSASEAYLERLY 498
Query: 565 NY----EKLVVLVEDIDLADPQF---IKILAD-------GFETENFGKVIFVLTKGDSSN 610
+ V+L+ED++ D ++ +K D + G I +L+ +
Sbjct: 499 DAVSENPHRVILIEDVEQGDHRWQVGVKEAIDRGVLRSQAGDEVGVGDAIIILS---CES 555
Query: 611 YEERIENQDSVINMTLKVNERNQNF-DHKRKAEWE 644
+E R ++N +KV + N DH K E E
Sbjct: 556 FEARSRAGSPLMNKKMKVEKEEANTSDHDHKLEIE 590
>gi|145323770|ref|NP_001077474.1| P-loop containing nucleoside triphosphate hydrolase domain and
Clp-N motif-containing protein [Arabidopsis thaliana]
gi|8954026|gb|AAF82200.1|AC067971_8 Strong similarity to an unknown protein F23F1.11 gi|7486038 from
Arabidopsis thaliana BAC F23F1 gb|AC004680. ESTs
gb|T75672, gb|N65732 and gb|AA404793 come from this gene
[Arabidopsis thaliana]
gi|332189971|gb|AEE28092.1| P-loop containing nucleoside triphosphate hydrolase domain and
Clp-N motif-containing protein [Arabidopsis thaliana]
Length = 979
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 119/567 (20%), Positives = 218/567 (38%), Gaps = 111/567 (19%)
Query: 73 EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAP 132
E+ + + EV RK ++N +++G+C + + F + G + ++ +
Sbjct: 221 ENSRRIGEVLGRKDKKNPLLIGNC---ANEALKTFTDSINSGKL-------GFLQMDISG 270
Query: 133 VTLRFMKKEEVEM------NLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNF 186
++L ++KE E+ N E++ KVD DL TV+Q S +
Sbjct: 271 LSLISIEKEISEILADGSKNEEEIRMKVD--------------DLGRTVEQSGSKSGIVL 316
Query: 187 N-GEIASCYNPINHLVSEVGKLVSDCNSASSTRV-WLMATASYQTYMKCQMRQPPLEIQW 244
N GE+ + N + + +SD S ++ ++ +S +TY K R P +E W
Sbjct: 317 NLGELKVLTSEANAALEILVSKLSDLLKHESKQLSFIGCVSSNETYTKLIDRFPTIEKDW 376
Query: 245 ALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFA------------IKEEED 292
L + I ++S S S + PF + +
Sbjct: 377 DLHVLPI----------TASTKPSTQGVYPKSSLMGSFVPFGGFFSSTSNFRVPLSSTVN 426
Query: 293 HKLNCCAECTSNY-EEEAQLFKSGQK--------KLLPPWLQP---------HSSSNA-- 332
L+ C C Y +E A + K+G + L PWL+ SS A
Sbjct: 427 QTLSRCHLCNEKYLQEVAAVLKAGSSLSLADKCSEKLAPWLRAIETKEDKGITGSSKALD 486
Query: 333 ---NQKDELVEMRRKWNRSCHSLHQGRHTQS----QFSSNLYNNQSLTGKSCSYASTYPW 385
+ +++KW+ C S+H HT + F S T KS ++Y
Sbjct: 487 DANTSASQTAALQKKWDNICQSIH---HTPAFPKLGFQSVSPQFPVQTEKSVRTPTSYLE 543
Query: 386 WPSQSSIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRL 445
P L + IS M+ +S + SC T +F G +
Sbjct: 544 TPK-----LLNPPIS-KPKPMEDLTASVTNRTVSLPLSCVTTDFGLGVIYAS------KN 591
Query: 446 DSLKSNEGKEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKS 505
K+ K + +TL NS L + + L ++L V WQ +++++I +++ CK+
Sbjct: 592 QESKTTREKPMLVTL---NSSLEHTYQKDFKSLREILSRKVAWQTEAVNAISQIICGCKT 648
Query: 506 ------AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGV------S 553
W L G D +GK+++A++++E FG +D + +
Sbjct: 649 DSTRRNQASGIWLALLGPDKVGKKKVAMTLSEVFFGGKVNYICVDFGAEHCSLDDKFRGK 708
Query: 554 SHSEMLMGTLKNYEKLVVLVEDIDLAD 580
+ + + G L VVL+E+++ A+
Sbjct: 709 TVVDYVTGELSRKPHSVVLLENVEKAE 735
>gi|449455148|ref|XP_004145315.1| PREDICTED: uncharacterized protein LOC101203741 [Cucumis sativus]
Length = 1090
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 102/429 (23%), Positives = 183/429 (42%), Gaps = 85/429 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS---------AKKATWFLLQGNDTIGKRRLALS 528
L+ L E V WQ + SIVE ++ C++ ++ W G D +GKR+++ +
Sbjct: 686 LWNALNEKVSWQGKATSSIVETILRCRTGGGKRRSSNSRGDIWLTFLGPDMMGKRKISFA 745
Query: 529 IAESVFGSTDLLFHIDM------RKRN-----DGVSSHSE---------MLMGTLKNYEK 568
+AE +FGS + L +D R+ N G++ + E + G L+
Sbjct: 746 LAELMFGSRENLISVDFGSQDRDRRHNSLFDCQGLNGYDERFRGQTVVDYVAGELRKKPS 805
Query: 569 LVVLVEDIDLADPQFIKILADGFETENF----------GKVIFVLT------KGDSSNYE 612
VVL+E++D AD + L+ T F IF+ T K + + E
Sbjct: 806 SVVLLENVDKADVRAKSCLSQAIATGKFLDSHGRQFTINNTIFLTTLPNKVKKTSNLDSE 865
Query: 613 ERIE-NQDSVI---NMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTI--- 665
E+ E ++D ++ N +++ + D K + T +PR +++++I
Sbjct: 866 EQTEFSEDRILAARNCQMQITVQGFTSD-VSKCKNTNVRITSAPR-----GSSNLSIFKK 919
Query: 666 ---DNVSSGNKKDFSRQSSFNTLDLNM---KADDEDDEGEQKPGELSPISSDLTRENITN 719
DN + KK S SF LDLN+ + +DE +EG+ SD E +
Sbjct: 920 RKLDNEFTELKKASSSSMSF--LDLNLPLEEVEDESNEGD--------CDSDSASEG--S 967
Query: 720 PALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEE 779
A + FL+ + + +F N + + ++ F +F ++V ++ +++ +
Sbjct: 968 EAWVDEFLEQVDEKIMF--KPYNFDEAAEKLVKEINLQFRRVFG--SEVVLEIDYKIIVQ 1023
Query: 780 VLIGSGFFH-NSLFEKWLKEVFQTS-LEAVKIGGKGGGIEIRLCFGCKNDKVFANYGFGD 837
+L + E+WL+ V S +EA G G I+L CK D V + G
Sbjct: 1024 ILAAKWLSEKKNAMEEWLELVLHRSFVEAEHKYQMGCGSVIKLV--CKEDCVMEDQAAG- 1080
Query: 838 SCLPKKIQI 846
LP KI++
Sbjct: 1081 IFLPAKIKL 1089
>gi|255592933|ref|XP_002535750.1| conserved hypothetical protein [Ricinus communis]
gi|223522072|gb|EEF26633.1| conserved hypothetical protein [Ricinus communis]
Length = 596
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 92/380 (24%), Positives = 152/380 (40%), Gaps = 72/380 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS---------AKKATWFLLQGNDTIGKRRLALS 528
+ K L E V WQ ++I +I + CK+ A+ W G D +GK+R+A
Sbjct: 186 ITKALTEKVGWQEEAICAITRAISRCKAGYGRSCGSTARGNIWLTFLGPDKVGKKRIASM 245
Query: 529 IAESVFG------STDLLFH-----------------IDMRKRNDGVSSHSEMLMGTLKN 565
+AE +FG S DL FH D++ R V + M +G +
Sbjct: 246 LAEIMFGSHEHLISVDLRFHDGSSQLNSVFECQESNDYDVKFRGKTVVDYISMELGKRPH 305
Query: 566 YEKLVVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTK----GDSSNY 611
VVL+E++D AD L+ T F +IFV+T G+ S+
Sbjct: 306 S---VVLLENVDKADLLVQNSLSQAVRTGKFADSHGREIGINNMIFVMTSTSAVGNKSHL 362
Query: 612 ---------EERIENQDS-VINMTLKVNERNQNFDHKRKAEW-EFANKTKSPRIDEKEDA 660
EERI S + M +K N + ++ T SP K D
Sbjct: 363 PQKVTIKFSEERILGAKSWQMKMLIKHAAEGSNRGSEMTMKFSRLVTSTASPVNKRKLDG 422
Query: 661 TSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNP 720
S T + S K + + +LDLN+ ++ ++ + SD EN +
Sbjct: 423 ASDTAEQDFSNEAKKQAHKLFGPSLDLNLPVEETEENNDS-----GSCGSDSISEN--SQ 475
Query: 721 ALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEV 780
A + FLD + + VF + + DG + + ++ F + F +V +++ V+ ++
Sbjct: 476 AWLDDFLDQVDEKVVF-KPFNFDG-LAEKIVREISTHFHKAFG--TEVPLEIDDEVMVQI 531
Query: 781 LIGSGFFHNS-LFEKWLKEV 799
L S S E W++EV
Sbjct: 532 LAASWLSDRSRAVEDWVEEV 551
>gi|449472677|ref|XP_004153665.1| PREDICTED: uncharacterized protein LOC101204506 [Cucumis sativus]
Length = 1094
Score = 63.2 bits (152), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 102/429 (23%), Positives = 183/429 (42%), Gaps = 85/429 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS---------AKKATWFLLQGNDTIGKRRLALS 528
L+ L E V WQ + SIVE ++ C++ ++ W G D +GKR+++ +
Sbjct: 690 LWNALNEKVSWQGKATSSIVETILRCRTGGGKRRSSNSRGDIWLTFLGPDMMGKRKISFA 749
Query: 529 IAESVFGSTDLLFHIDM------RKRN-----DGVSSHSE---------MLMGTLKNYEK 568
+AE +FGS + L +D R+ N G++ + E + G L+
Sbjct: 750 LAELMFGSRENLISVDFGSQDRDRRHNSLFDCQGLNGYDERFRGQTVVDYVAGELRKKPS 809
Query: 569 LVVLVEDIDLADPQFIKILADGFETENF----------GKVIFVLT------KGDSSNYE 612
VVL+E++D AD + L+ T F IF+ T K + + E
Sbjct: 810 SVVLLENVDKADVRAKSCLSQAIATGKFLDSHGRQFTINNTIFLTTLPNKVKKTSNLDSE 869
Query: 613 ERIE-NQDSVI---NMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTI--- 665
E+ E ++D ++ N +++ + D K + T +PR +++++I
Sbjct: 870 EQTEFSEDRILAARNCQMQITVQGFTSD-VSKCKNTNVRITSAPR-----GSSNLSIFKK 923
Query: 666 ---DNVSSGNKKDFSRQSSFNTLDLNM---KADDEDDEGEQKPGELSPISSDLTRENITN 719
DN + KK S SF LDLN+ + +DE +EG+ SD E +
Sbjct: 924 RKLDNEFTELKKASSSSMSF--LDLNLPLEEVEDESNEGD--------CDSDSASEG--S 971
Query: 720 PALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEE 779
A + FL+ + + +F N + + ++ F +F ++V ++ +++ +
Sbjct: 972 EAWVDEFLEQVDEKIMF--KPYNFDEAAEKLVKEINLQFRRVFG--SEVVLEIDYKIIVQ 1027
Query: 780 VLIGSGFFH-NSLFEKWLKEVFQTS-LEAVKIGGKGGGIEIRLCFGCKNDKVFANYGFGD 837
+L + E+WL+ V S +EA G G I+L CK D V + G
Sbjct: 1028 ILAAKWLSEKKNAMEEWLELVLHRSFVEAEHKYQMGCGSVIKLV--CKEDCVMEDQAAG- 1084
Query: 838 SCLPKKIQI 846
LP KI++
Sbjct: 1085 IFLPAKIKL 1093
>gi|18402202|ref|NP_565689.1| double Clp-N motif-containing P-loop nucleoside triphosphate
hydrolase domain-containing protein [Arabidopsis
thaliana]
gi|3420054|gb|AAC31855.1| expressed protein [Arabidopsis thaliana]
gi|330253235|gb|AEC08329.1| double Clp-N motif-containing P-loop nucleoside triphosphate
hydrolase domain-containing protein [Arabidopsis
thaliana]
Length = 1002
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 126/579 (21%), Positives = 220/579 (37%), Gaps = 111/579 (19%)
Query: 73 EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAP 132
E+ + + EV RK ++N ++VG C D + R + G +P E+ V+
Sbjct: 223 ENCRRIGEVLARKDKKNPLLVGVCGVEALKTFTDSINRGKFGFLPLEISGLSVVS----- 277
Query: 133 VTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIAS 192
+K EV ++ + + K D L + G ++ G+LK +AS
Sbjct: 278 -----IKISEVLVDGSRIDIKFDDLGRLKSGMVLNLGELKV----------------LAS 316
Query: 193 CYNPINHLVSEVGKLVSDCNSASSTRVWLMATASY-QTYMKCQMRQPPLEIQWALQAVSI 251
++ + V KL +D ++W + + S +TY+K R P ++ W L + I
Sbjct: 317 DVFSVDVIEKFVLKL-ADLLKLHREKLWFIGSVSSNETYLKLIERFPTIDKDWNLHLLPI 375
Query: 252 PSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKEEE--DHKLNCCAECTSNYEEEA 309
S GL SS+ S + F S T F I + L C C YE+E
Sbjct: 376 TSSSQGL-YPKSSLMGSFVPFGGFFSS---TSDFRIPSSSSMNQTLPRCHLCNEKYEQEV 431
Query: 310 QLF-KSGQ------KKLLPPWLQ----PHSSSNANQ-KDE-------LVEMRRKWNRSCH 350
F KSG + LP WL+ H N + KD+ + +++KW+ C
Sbjct: 432 TAFAKSGSMIDDQCSEKLPSWLRNVEHEHEKGNLGKVKDDPNVLASRIPALQKKWDDICQ 491
Query: 351 SLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSISFAESAMKPHN 410
+HQ + L S S P++ I S SF P N
Sbjct: 492 RIHQTPAFPKLSFQPVRPQFPLQLGSSSQTKMSLGSPTE-KIVCTRTSESFQGMVALPQN 550
Query: 411 SSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGKEVKITLALG------N 464
+ Q +++ + KP+ E S ++ V L LG N
Sbjct: 551 PPH--------QPGLSVKIS------KPKHTEDLSSSTTNSPLSFVTTDLGLGTIYASKN 596
Query: 465 SELSDSAKLQRSD---------------------LYKVLQENVPWQFDSIHSIVEVLVEC 503
E S ++R D L ++L V +Q +++++I E++
Sbjct: 597 QEPSTPVSVERRDFEVIKEKQLLSASRYCKDFKSLRELLSRKVGFQNEAVNAISEIVCGY 656
Query: 504 KSAKKA----------TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR---ND 550
+ + W L G D GK+++AL++AE G D +D + + +D
Sbjct: 657 RDESRRRNNHVATTSNVWLALLGPDKAGKKKVALALAEVFCGGQDNFICVDFKSQDSLDD 716
Query: 551 GVSSHS--EMLMGTLKNYEKLVVLVEDIDLAD-PQFIKI 586
+ + + G + VV +E+++ A+ P I++
Sbjct: 717 RFRGKTVVDYIAGEVARRADSVVFIENVEKAEFPDQIRL 755
>gi|255585368|ref|XP_002533380.1| conserved hypothetical protein [Ricinus communis]
gi|223526773|gb|EEF28998.1| conserved hypothetical protein [Ricinus communis]
Length = 1112
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 132/315 (41%), Gaps = 49/315 (15%)
Query: 73 EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAP 132
E+ + + EV +R K RN ++VG C T A + + + +P EL VI
Sbjct: 219 ENCRRIGEVLVRNKGRNPLLVGVCAYDTLASFNQLVEKRKDYVLPVELSGLRVICIESD- 277
Query: 133 VTLRF----MKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNG 188
++F K V++ E+ R V+ ++G G ++ GDLK + E++ +N+ NG
Sbjct: 278 -VMKFASENFDKGCVDLRFEEVGRFVEQ--NLGPGLVVNLGDLKAFI-SSENDYSNSSNG 333
Query: 189 EIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMAT-ASYQTYMKCQMRQPPLEIQWALQ 247
+N L+S + + ++ +VWL+ T ASY+ Y+K R P +E W LQ
Sbjct: 334 --------LNDLMSYIVEKLTRMLQLYGRKVWLIGTTASYEGYLKFVSRFPSVEKDWDLQ 385
Query: 248 AVSIPS--GGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNC---CAECT 302
+ I S + S SS+ ES + F + + P + C C C
Sbjct: 386 LLPITSFRTSMPESCPRSSLMESFIPFGG-----FFSTPSELNGSLSSSYQCISRCHLCN 440
Query: 303 SNYEEEAQLFKSG---------QKKLLPPWLQ-----PHSSSNANQKDE-------LVEM 341
E+E G + LP WLQ + + +D+ + +
Sbjct: 441 EKCEQEVLAVSKGGCVASVADQYQSNLPSWLQMAELGTNKGLDVKTRDDGDVLSAKVAGL 500
Query: 342 RRKWNRSCHSLHQGR 356
++KW+ C LH R
Sbjct: 501 QKKWDSICWRLHLTR 515
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 25/144 (17%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECK---------SAKKATWFLLQGNDTIGKRRLALS 528
L + L E V Q +++H I + + + S K+ WF G D KR++A +
Sbjct: 705 LVRALTEKVSCQDEAVHLISQTIAHYRTRNERHQGSSLKRDIWFNFLGPDRCSKRKIAAA 764
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHSE----------------MLMGTLKNYEKLVVL 572
+AE +FGS++ L D+ ++ V+ HSE + G L VV
Sbjct: 765 LAEIIFGSSENLISADLSPQDGIVNMHSEEVHAYDVMFRGKTIIDYVAGELGKKPLAVVF 824
Query: 573 VEDIDLADPQFIKILADGFETENF 596
+E++D AD Q L+ T F
Sbjct: 825 LENVDKADVQAQNSLSRAIRTGKF 848
>gi|14532596|gb|AAK64026.1| unknown protein [Arabidopsis thaliana]
Length = 1002
Score = 62.8 bits (151), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 126/579 (21%), Positives = 220/579 (37%), Gaps = 111/579 (19%)
Query: 73 EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAP 132
E+ + + EV RK ++N ++VG C D + R + G +P E+ V+
Sbjct: 223 ENCRRIGEVLARKDKKNPLLVGVCGVEALKTFTDSINRGKFGFLPLEISGLSVVS----- 277
Query: 133 VTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIAS 192
+K EV ++ + + K D L + G ++ G+LK +AS
Sbjct: 278 -----IKISEVLVDGSRIDIKFDDLGRLKSGMVLNLGELKV----------------LAS 316
Query: 193 CYNPINHLVSEVGKLVSDCNSASSTRVWLMATASY-QTYMKCQMRQPPLEIQWALQAVSI 251
++ + V KL +D ++W + + S +TY+K R P ++ W L + I
Sbjct: 317 DVFSVDVIEKFVLKL-ADLLKLHREKLWFIGSVSSNETYLKLIERFPTIDKDWNLHLLPI 375
Query: 252 PSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKEEE--DHKLNCCAECTSNYEEEA 309
S GL SS+ S + F S T F I + L C C YE+E
Sbjct: 376 TSSSQGL-YPKSSLMGSFVPFGGFFSS---TSDFRIPSSSSMNQTLPRCHLCNEKYEQEV 431
Query: 310 QLF-KSGQ------KKLLPPWLQ----PHSSSNANQ-KDE-------LVEMRRKWNRSCH 350
F KSG + LP WL+ H N + KD+ + +++KW+ C
Sbjct: 432 TAFAKSGSMIDDQCSEKLPSWLRNVEHEHEKGNLGKVKDDPNVLASRIPALQKKWDDICQ 491
Query: 351 SLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSISFAESAMKPHN 410
+HQ + L S S P++ I S SF P N
Sbjct: 492 RIHQTPAFPKLSFQPVRPQFPLQLGSSSQTKMSLGSPTE-KIVCTRTSESFQGMVALPQN 550
Query: 411 SSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGKEVKITLALG------N 464
+ Q +++ + KP+ E S ++ V L LG N
Sbjct: 551 PPH--------QPGLSVKIS------KPKHTEDLSSSTTNSPLSFVTTDLGLGTIYASKN 596
Query: 465 SELSDSAKLQRSD---------------------LYKVLQENVPWQFDSIHSIVEVLVEC 503
E S ++R D L ++L V +Q +++++I E++
Sbjct: 597 QEPSTPVSVERRDFEVIKEKQLLSASRYCKDFKSLRELLSRKVGFQNEAVNAISEIVCGY 656
Query: 504 KSAKKA----------TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR---ND 550
+ + W L G D GK+++AL++AE G D +D + + +D
Sbjct: 657 RDESRRRNNHVATTSNVWLALLGPDKAGKKKVALALAEVFCGGQDNFICVDFKSQDSLDD 716
Query: 551 GVSSHS--EMLMGTLKNYEKLVVLVEDIDLAD-PQFIKI 586
+ + + G + VV +E+++ A+ P I++
Sbjct: 717 RFRGKTVVDYIAGEVARRAGSVVFIENVEKAEFPDQIRL 755
>gi|297611270|ref|NP_001065796.2| Os11g0156800 [Oryza sativa Japonica Group]
gi|255679806|dbj|BAF27641.2| Os11g0156800, partial [Oryza sativa Japonica Group]
Length = 467
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/344 (22%), Positives = 119/344 (34%), Gaps = 90/344 (26%)
Query: 225 ASYQTYMKCQMR-QPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWETK 283
SYQ YMKC+ QPPLE W L V +P GGL LSL S ++ + P+ W
Sbjct: 1 GSYQVYMKCRAAGQPPLEAVWELHPVVVPDGGLALSLTCSEASQATHQAAA-PTAGW--- 56
Query: 284 PFAIKEEEDHKLNCCAECTSNYEEEAQLFKSGQKKLLPPWLQ---------PHSSSNANQ 334
PF + + +PPWL+ P S Q
Sbjct: 57 PFV-------------------NGAGEAAATTASPTIPPWLRRYQDPDHATPASCGTGLQ 97
Query: 335 KDELVEMRRKWNRSCHS-------LHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWP 387
+L R + H+ + S ++S NN ++ K + PW
Sbjct: 98 IQDLWNPMRNGSAPHHTSELTLSFSSPSPSSISGYTSCYNNNNMMSSKPWQLEARQPW-- 155
Query: 388 SQSSIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDS 447
+ AM ++ + + +S S G TR+P+ +E ++
Sbjct: 156 -------PIHGHEGQRMAMASYHDHHPLDTNPSPESNSVSNSLDGGETRRPKFIELNAEN 208
Query: 448 LKSNEGKEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAK 507
LK L L+ VP + + I +++C+S
Sbjct: 209 LKI---------------------------LCNALESRVPQHSNIVPDIASTVLQCRSGM 241
Query: 508 K--------------ATWFLLQGNDTIGKRRLALSIAESVFGST 537
K TW L QG D GK+ +A +A+ VFGS+
Sbjct: 242 KKMKLRHKEIIKASSTTWLLFQGRDVDGKKAMAQELAKLVFGSS 285
>gi|125560774|gb|EAZ06222.1| hypothetical protein OsI_28464 [Oryza sativa Indica Group]
Length = 202
Score = 61.6 bits (148), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 18/169 (10%)
Query: 83 LRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEE 142
L+ RRN V+VGD + DA++ + + R+ P L V+ A + K
Sbjct: 2 LKPTRRNPVLVGD--AGPDAVLKEAIRRIPTAGFPA-LAGAKVLPLE-AELAKLAGDKAA 57
Query: 143 VEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVS 202
+ + +L V+ L GG ++ GDLKW VD G A+ V+
Sbjct: 58 MAARIGDLGAVVERLLGEHGGVVLDLGDLKWLVD-----------GPAAAASEGGKAAVA 106
Query: 203 EVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSI 251
E+G+L+ A VW + TA+ TY++C++ P +E +W L AV I
Sbjct: 107 EMGRLLRRFGRAG---VWAVCTAACTTYLRCKVYHPGMEAEWDLHAVPI 152
>gi|224142299|ref|XP_002324496.1| predicted protein [Populus trichocarpa]
gi|222865930|gb|EEF03061.1| predicted protein [Populus trichocarpa]
Length = 543
Score = 60.5 bits (145), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 80/362 (22%), Positives = 151/362 (41%), Gaps = 67/362 (18%)
Query: 488 WQFDSIHSIVEVLVECK---------SAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD 538
WQ D+ ++ + +CK +K W L G D GK+++A +++E V G+
Sbjct: 169 WQRDAASAVATTVTQCKLGHGKGRSTGSKGDIWLLFTGPDRAGKKKMASALSELVCGANP 228
Query: 539 LLFHIDMRKRNDGVSSHS-------EMLMGTLKNYEKLVVLVEDIDLADPQFIK------ 585
++ + R DG S S + + ++ V+++EDID AD ++
Sbjct: 229 IMVCLG-SWREDGESEVSFRGKTVLDRIAEAVRRNPFSVIILEDIDEAD-MLVRGSIKRA 286
Query: 586 ----ILADGFETE-NFGKVIFVLTKGDSSNYEERIENQDSV------------INMTLKV 628
+AD E + G VIF+LT + + + N S+ + L +
Sbjct: 287 MERGRIADSLGREISLGNVIFILTANRLPDNLKFLSNGISLDEKKLASLASGGWQLRLTL 346
Query: 629 NERNQNFDHKRKAEW-EFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDL 687
+ER KR+A W ++ PR K+ T++ D + D S N+ DL
Sbjct: 347 SERTA----KRRANWLHDEERSAKPR---KDLGTALAFDLNEAAETGDDKADGSHNSSDL 399
Query: 688 NMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKIT 747
+ +DED + L+ +S +++E L+L+ + VF ++ I
Sbjct: 400 TVDHEDEDALNNRL---LTSATSSVSKE----------LLNLVDDHIVFKH--ADFSSIR 444
Query: 748 GLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSGFFHNSLFEKWLKEVFQTSLEAV 807
+ + F IF N++ +++ LE++ +G + + E+W V SL +
Sbjct: 445 HDISNSITKKFSTIF--SNQMQIEIQDEALEKI-VGGIWLARTGLEEWTDNVLVPSLRQL 501
Query: 808 KI 809
K+
Sbjct: 502 KL 503
>gi|449519683|ref|XP_004166864.1| PREDICTED: uncharacterized protein LOC101231048, partial [Cucumis
sativus]
Length = 702
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 99/429 (23%), Positives = 181/429 (42%), Gaps = 85/429 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS---------AKKATWFLLQGNDTIGKRRLALS 528
L+ L E V WQ + SIVE ++ C++ ++ W G D +GKR+++ +
Sbjct: 298 LWNALNEKVSWQGKATSSIVETILRCRTGGGKRRSSNSRGDIWLTFLGPDMMGKRKISFA 357
Query: 529 IAESVFGSTDLLFHIDMRKRN-----------DGVSSHSE---------MLMGTLKNYEK 568
+AE + GS + L +D ++ G++ + E + G L+
Sbjct: 358 LAELMVGSRENLISVDFGSQDRDQRHNSLFDCQGLNGYDERFRGQTVVDYVAGELRKKPS 417
Query: 569 LVVLVEDIDLADPQFIKILADGFETENF----------GKVIFVLT------KGDSSNYE 612
VVL+E++D AD + L+ T F IF+ T K + + E
Sbjct: 418 SVVLLENVDKADVRAKSCLSQAIATGKFLDSHGRQFTINNTIFLTTLPNKVKKTSNLDSE 477
Query: 613 ERIE-NQDSVI---NMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTI--- 665
E+ E ++D ++ N +++ + D K + T +PR +++++I
Sbjct: 478 EQTEFSEDRILAARNCQMQITVQGFTSD-VSKCKNTNVRITSAPR-----GSSNLSIFKK 531
Query: 666 ---DNVSSGNKKDFSRQSSFNTLDLNM---KADDEDDEGEQKPGELSPISSDLTRENITN 719
DN + KK S SF LDLN+ + +DE +EG+ SD E +
Sbjct: 532 RKLDNEFTELKKASSSSMSF--LDLNLPLEEVEDESNEGD--------CDSDSASEG--S 579
Query: 720 PALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEE 779
A + FL+ + + +F N + + ++ F +F ++V ++ +++ +
Sbjct: 580 EAWVDEFLEQVDEKIMF--KPYNFDEAAEKLVKEINLQFRRVFG--SEVVLEIDYKIIVQ 635
Query: 780 VLIGSGFFH-NSLFEKWLKEVFQTS-LEAVKIGGKGGGIEIRLCFGCKNDKVFANYGFGD 837
+L + E+WL+ V S +EA G G I+L CK D V + G
Sbjct: 636 ILAAKWLSEKKNAMEEWLELVLHRSFVEAEHKYQMGCGSVIKLV--CKEDCVMEDQAAG- 692
Query: 838 SCLPKKIQI 846
LP KI++
Sbjct: 693 IFLPAKIKL 701
>gi|224059278|ref|XP_002299803.1| predicted protein [Populus trichocarpa]
gi|222847061|gb|EEE84608.1| predicted protein [Populus trichocarpa]
Length = 1025
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 137/337 (40%), Gaps = 61/337 (18%)
Query: 78 VFEVFLRK--KRRNTVIVGDCLSITDALVFDFMGRVERGDV-PQELKQTHVIKF-----H 129
+ E +R+ K RN ++VG S D + + +G V P E+ VI H
Sbjct: 228 IGEALVRRDGKGRNLLLVGVYASKALKGFVDSVNKENKGGVLPSEINGVSVISIEDEIIH 287
Query: 130 FAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGE 189
F V+ KE++ + EL ++++ + G G ++ GD+K V +
Sbjct: 288 F--VSELGGDKEKMGLKFEELGQELEQYS--GPGIVVNFGDMKVLVGEN----------- 332
Query: 190 IASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATA-SYQTYMKCQMRQPPLEIQWALQA 248
C + +++LVS++ L+ ++WL+ TA SY TY+K R +E W L+
Sbjct: 333 --VCGDAVSYLVSKLTSLLEGFRG----KIWLVGTADSYDTYLKSVGRFSSVEKDWDLRV 386
Query: 249 VSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKEEE---DHKLNCCAECTSNY 305
+ I S + SS +S L S P + + P K+ + + CC C + Y
Sbjct: 387 LPIASYKSPVGDFSS---KSSLLGSFVPFGGFFSTPSDFKKPTNSINQSIICCHLCNAKY 443
Query: 306 EEE-AQLFKSG--------QKKLLPPWLQPHSSSNANQKD------------ELVEMRRK 344
E++ A + K G + LP LQ D +++ +R K
Sbjct: 444 EKDVAAILKMGSTTSVADQSSEKLPSLLQMAELDTGKAVDAVKVDDDTALNAKILGLRNK 503
Query: 345 WNRSCHSLHQG----RHTQSQFSSNLYNNQSLTGKSC 377
WN C LH + SQ +S + + K C
Sbjct: 504 WNDICQRLHHAQPFFKFDVSQATSQVSIAEGFQSKHC 540
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 29/148 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS---------AKKATWFLLQGNDTIGKRRLALS 528
+ + + E V WQ + ++I E + CK+ +K F+L G D IGK+++A +
Sbjct: 638 VMRAISEKVGWQDRATYAIGEAVSRCKAGHGRHHGSNSKGDISFILLGPDRIGKKKIASA 697
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHS--------------------EMLMGTLKNYEK 568
+AE +FGST +D+ + SS+S + + L
Sbjct: 698 LAEVMFGSTQSFISLDLGSHDKVSSSNSIFDSQELQYDDELGRSMTFVDRIASKLSKKPH 757
Query: 569 LVVLVEDIDLADPQFIKILADGFETENF 596
++ +E+ID ADP L+ T F
Sbjct: 758 SLIFLENIDKADPLVQHSLSYALRTGRF 785
>gi|413937154|gb|AFW71705.1| hypothetical protein ZEAMMB73_287089 [Zea mays]
Length = 647
Score = 57.8 bits (138), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 199 HLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGL 258
H V+EV L C VWL+ SYQ+YM+C+ QP LE W LQ +++P+G L
Sbjct: 107 HAVAEVRALA--CRGGDG--VWLVGYGSYQSYMRCRAGQPSLETLWGLQTLAVPAGSLAF 162
Query: 259 SL 260
SL
Sbjct: 163 SL 164
Score = 46.2 bits (108), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 21/80 (26%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS---------------------AKKATWFLLQG 516
L L++ VPWQ + + I +++C+S AK+ TW L G
Sbjct: 371 LCSALEKEVPWQAEIVPEIASTVLQCRSGMARRREAAVSSSRPSSTQACAKEDTWMLFHG 430
Query: 517 NDTIGKRRLALSIAESVFGS 536
D GK R+A +A VFGS
Sbjct: 431 GDAEGKARVARELARLVFGS 450
>gi|326513004|dbj|BAK03409.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1134
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 18/150 (12%)
Query: 460 LALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA--------KKATW 511
LA S+LSD KL L+KV+ Q +++ +I +V C+S K W
Sbjct: 706 LAAQGSDLSDY-KLLVERLFKVVGR----QEEALSAICGSIVGCQSTERRRGASRKNDIW 760
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-----EMLMGTLKNY 566
F G D++ KRR+A+++AE V GS D H+D+ ++ G SS + ++ L
Sbjct: 761 FSFHGFDSVAKRRVAVALAELVHGSQDSFIHLDLSLQDWGGSSFRGKTGIDCIVEELSKK 820
Query: 567 EKLVVLVEDIDLADPQFIKILADGFETENF 596
+ V+ +++ID AD L+ +T F
Sbjct: 821 RRCVIFLDNIDKADCLVQDSLSHAVDTGRF 850
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 99/245 (40%), Gaps = 49/245 (20%)
Query: 156 SLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSAS 215
++ S G +I GDL+ V +GE+ +V+EV +++ +
Sbjct: 285 AMASATSGLVISVGDLRELVPD---------DGELQERGR---RVVAEVTRVL---ETHR 329
Query: 216 STRVWLMA-TASYQTYMKCQMRQPPLEIQWALQAVSIPS---GGL--------GLSLHSS 263
RVW+M +A+Y+TY+ + P ++ W LQ + I + GGL LS S+
Sbjct: 330 EGRVWVMGWSATYETYLTFLSKFPLVDKDWELQLLPITAVRAGGLMPPATTPPALS-KSA 388
Query: 264 SVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCAECTSNYEEEAQLFKSGQ-----KK 318
S+ ES F + +++ A+ + C +C E+E G +
Sbjct: 389 SLVESFSPFGGLVNNTYDSNSLAV--HPGPQTLRCQQCNDRCEQEVTTIVKGSGITADQG 446
Query: 319 LLPPWLQPHSSSNANQ--------------KDELVEMRRKWNRSCHSLHQGRHTQSQFSS 364
LP LQ S N K +++ +++KWN C LHQG +
Sbjct: 447 GLPSLLQNGSMMGLNNGLDVIKVRDDQMVLKSKILNLQKKWNEYCLRLHQGSQRINTGPY 506
Query: 365 NLYNN 369
L+ N
Sbjct: 507 QLFPN 511
>gi|168703823|ref|ZP_02736100.1| ATPase with chaperone activity, ATP-binding subunit [Gemmata
obscuriglobus UQM 2246]
Length = 1108
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 106/237 (44%), Gaps = 37/237 (15%)
Query: 433 NCTRKPQGVE--PRLDSLKSNEGKEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQF 490
+ TR G E PR + + + + L + L +L R + LQE V Q
Sbjct: 446 SATRPADGYEFPPRPEITRDDVLNDFAARSGLSLAFLDPKQRLDRDAVRDKLQEQVIGQP 505
Query: 491 DSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDM 545
D++ ++ +V+ K+ + FL G +GK A +IA ++FG +D L D+
Sbjct: 506 DAVDALADVVSVAKARLNDPDRPLAAFLFLGPTGVGKTECAKAIARTLFGDSDRLLRFDL 565
Query: 546 RKRNDGVSSHSEMLMGTLKNYEKL-----------VVLVEDIDLADPQ----FIKILADG 590
+ N + L+GT + E L VVL+++I+ ADP+ +++L +G
Sbjct: 566 NEYNQ--PGAAARLVGTFQQPEGLLTSAIRRQPFAVVLLDEIEKADPEVFDLLLQLLGEG 623
Query: 591 FETENFGKV-----IFVLTKGDSSNYEERIENQDSVINMTLKVNERNQNFDHKRKAE 642
T++ G+ VL +SN R D+ N+ V E +++F + R AE
Sbjct: 624 RLTDSLGRTADFTSALVLM---TSNLGVR----DAEGNLGF-VTEADRSFAYTRAAE 672
>gi|357152976|ref|XP_003576297.1| PREDICTED: uncharacterized protein LOC100837720 [Brachypodium
distachyon]
Length = 841
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 92/442 (20%), Positives = 161/442 (36%), Gaps = 73/442 (16%)
Query: 107 FMGRVERGDVPQELKQTHVIKFHFAPVTL---RFMKKEEVEMNLTELKRKVDSLTSVGGG 163
M V + ++PQ + F P+++ R + EV+ EL+ G G
Sbjct: 260 VMDMVSKAELPQGQNYKQLACVQFVPLSVSSFRAAARGEVDARTGELRGLAREAQRAGKG 319
Query: 164 AIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMA 223
++ DL + D + Y P+ H V EV LV R W++
Sbjct: 320 LVVVVQDLAFAADFWAEAGKRPRAEDY---YCPLEHAVMEVSGLVRH----GGGRFWMLG 372
Query: 224 TASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWETK 283
AS + +C+ +P L W + V P + S S W
Sbjct: 373 FASEAVFSRCRAGRPSLADVWGIHPVVFPG-------------DGGCCSSGGRSAGW--P 417
Query: 284 PFAIKEEEDHKLNCCAECTSNYEEEAQLFKSGQKKLLPPWLQPHSSSN-----ANQKDEL 338
P + +N E + + EE ++PPWL+ + N ++ +L
Sbjct: 418 PLVV-------INGAGEMSPTWPEEPM-------SIIPPWLRRYHDPNLAAPPSSCGTDL 463
Query: 339 VEMRRKWNRS-CH--SLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLD 395
+++ W S C S RHT S+ + + + S + + Y + Q LD
Sbjct: 464 QQLQDLWKPSMCSNGSSAAARHT-SELTLSFSSPPSPSPVPAASDHNYYYSKQQPRQLLD 522
Query: 396 SN-SISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGK 454
+ + +A P ++ A + G C +P+ E +SLK+ G
Sbjct: 523 PHQQLQLRATATTPSPPESTSA--------QSSSSGSGVCPLRPRFTELTAESLKTLCGA 574
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATWFLL 514
++ LA S DL + V + + + ++A ATW +
Sbjct: 575 -LEGPLAPPRSR----------DLAPAIASVVLRRRSGVTTQRR-----RTAAAATWLVF 618
Query: 515 QGNDTIGKRRLALSIAESVFGS 536
+G+D GK+ +A+ +A VFGS
Sbjct: 619 RGDDGDGKKAMAMELARLVFGS 640
>gi|326488024|dbj|BAJ89851.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1134
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 18/150 (12%)
Query: 460 LALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA--------KKATW 511
LA S+LSD KL L+KV+ Q +++ +I +V C+S K W
Sbjct: 706 LAAQGSDLSDY-KLLVERLFKVVGR----QEEALSAICGSIVGCQSTERRRGASRKNDIW 760
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-----EMLMGTLKNY 566
F G D++ KRR+A+++AE V GS D H+D+ ++ G SS + ++ L
Sbjct: 761 FSFHGFDSVAKRRVAVALAELVHGSQDSFIHLDLSLQDWGGSSFRGKTGIDCIVEELSKK 820
Query: 567 EKLVVLVEDIDLADPQFIKILADGFETENF 596
+ V+ +++ID AD L+ +T F
Sbjct: 821 RRCVIFLDNIDKADCLVQDSLSHAVDTGRF 850
Score = 44.3 bits (103), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 99/245 (40%), Gaps = 49/245 (20%)
Query: 156 SLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSAS 215
++ S G +I GDL+ V +GE+ +V+EV +++ +
Sbjct: 285 AMASATSGLVISVGDLRELVPD---------DGELQERGR---RVVAEVTRVL---ETHR 329
Query: 216 STRVWLMA-TASYQTYMKCQMRQPPLEIQWALQAVSIPS---GGL--------GLSLHSS 263
RVW+M +A+Y+TY+ + P ++ W LQ + I + GGL LS S+
Sbjct: 330 EGRVWVMGWSATYETYLTFLSKFPLVDEDWELQLLPITAVRAGGLMPPATTPPALS-KSA 388
Query: 264 SVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCAECTSNYEEEAQLFKSGQ-----KK 318
S+ ES F + +++ A+ + C +C E+E G +
Sbjct: 389 SLVESFSPFGGLVNNTYDSNSLAV--HPGPQTLRCQQCNDRCEQEVTTIVKGSGITADQG 446
Query: 319 LLPPWLQPHSSSNANQ--------------KDELVEMRRKWNRSCHSLHQGRHTQSQFSS 364
LP LQ S N K +++ +++KWN C LHQG +
Sbjct: 447 GLPSLLQNGSMMGLNNGLDVIKVRDDQMVLKSKILNLQKKWNEYCLRLHQGSQRINTGPY 506
Query: 365 NLYNN 369
L+ N
Sbjct: 507 QLFPN 511
>gi|409349505|ref|ZP_11232940.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
equicursoris CIP 110162]
gi|407878068|emb|CCK84998.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
equicursoris CIP 110162]
Length = 818
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 108/247 (43%), Gaps = 55/247 (22%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDT 519
++L S + ++L +L E V Q D++ ++ + +S K FL G
Sbjct: 492 TQLKTSENKRLANLEGILHERVIGQDDAVKAVANAIRRSRSGLKDENRPIGSFLFLGPTG 551
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKL---------- 569
+GK LA ++AE+VFGS D + +DM + D S L+G+ Y
Sbjct: 552 VGKTELAKAVAEAVFGSEDNIIRVDMSEYMD--KEASSKLIGSAPGYVGYEEGGQLSNKV 609
Query: 570 ------VVLVEDIDLADPQ----FIKILADGFETENFGKVIFVLTKGDSSNYEERIENQD 619
VVL ++++ A+P+ +++L +GF T++ G+ +I+ ++
Sbjct: 610 REHPYSVVLFDEVEKANPEIFNVLLRVLDEGFLTDSLGR---------------KIDFRN 654
Query: 620 SVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQ 679
++I MT + R+ D+ + FA KTK D V D V+ KDF R
Sbjct: 655 TIIIMTSNLGSRSLEEDN----QVGFA-KTKP-------DQAKVISDKVAKAT-KDFFRP 701
Query: 680 SSFNTLD 686
N +D
Sbjct: 702 EFLNRID 708
>gi|408410506|ref|ZP_11181716.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus sp.
66c]
gi|408410727|ref|ZP_11181928.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus sp.
66c]
gi|407875066|emb|CCK83734.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus sp.
66c]
gi|407875287|emb|CCK83522.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus sp.
66c]
Length = 820
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 108/247 (43%), Gaps = 55/247 (22%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDT 519
++L S + ++L +L E V Q D++ ++ + +S K FL G
Sbjct: 492 TQLKTSENKRLANLEGILHERVIGQDDAVKAVANAIRRSRSGLKDENRPIGSFLFLGPTG 551
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKL---------- 569
+GK LA ++AE+VFGS D + +DM + D S L+G+ Y
Sbjct: 552 VGKTELAKAVAEAVFGSEDNIIRVDMSEYMD--KEASSKLIGSAPGYVGYEEGGQLSNKV 609
Query: 570 ------VVLVEDIDLADPQ----FIKILADGFETENFGKVIFVLTKGDSSNYEERIENQD 619
VVL ++++ A+P+ +++L +GF T++ G+ +I+ ++
Sbjct: 610 REHPYSVVLFDEVEKANPEIFNVLLRVLDEGFLTDSLGR---------------KIDFRN 654
Query: 620 SVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQ 679
++I MT + R+ D+ + FA KTK D V D V+ KDF R
Sbjct: 655 TIIIMTSNLGSRSLEEDN----QVGFA-KTKP-------DQAKVISDKVAKAT-KDFFRP 701
Query: 680 SSFNTLD 686
N +D
Sbjct: 702 DFLNRID 708
>gi|224112499|ref|XP_002316210.1| predicted protein [Populus trichocarpa]
gi|222865250|gb|EEF02381.1| predicted protein [Populus trichocarpa]
Length = 468
Score = 55.5 bits (132), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 87/196 (44%), Gaps = 32/196 (16%)
Query: 80 EVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI-------KFHFAP 132
EV R K RN ++VG T A + + + + +P EL VI KF
Sbjct: 245 EVLARNKGRNPLLVGLSAYHTLASFSEMVEKRKENVLPVELCGLSVICMESDVNKF---- 300
Query: 133 VTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIAS 192
+T K+ V++ EL + V+ S+G G + GDLK V + NN +
Sbjct: 301 ITSENFDKKCVDLRFEELGQFVEK--SLGPGLLANFGDLKAFVSNDDHNNGMD------- 351
Query: 193 CYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIP 252
+ +++++ ++ KL+ RVWL+ ASY+ Y K R P E W LQ + I
Sbjct: 352 --DAVSYVIEKLTKLLQ----LYGGRVWLIGAASYENYSKFVGRFPSTEKDWDLQLLPI- 404
Query: 253 SGGLGLSLHSSSVHES 268
SL + SV ES
Sbjct: 405 -----TSLRTPSVAES 415
>gi|224097580|ref|XP_002310995.1| predicted protein [Populus trichocarpa]
gi|222850815|gb|EEE88362.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 9/124 (7%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPS--SSEAHHFINPNTFWQN 58
MREAGFSST +KN +E + + + + + P S+ + + F
Sbjct: 149 MREAGFSSTQVKNKVEQAVSLEICPQSSVTVSSQSKEITKPQVLSASVPQPLPLSQFGII 208
Query: 59 HALFSSQKPA-SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVP 117
H KP V +D+ V +RKKR NTVI G+CL+ +++V M +VERG+
Sbjct: 209 HG-----KPLDQVRNDDVMSVLNALVRKKR-NTVITGECLATAESVVRGVMDKVERGEAS 262
Query: 118 QELK 121
+L+
Sbjct: 263 GDLR 266
Score = 47.4 bits (111), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 52/134 (38%), Gaps = 30/134 (22%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-------------KKATWFLLQGNDTIGKR 523
+L L++ VPWQ D I I ++EC+S K TW G D GK
Sbjct: 481 NLRSGLEKKVPWQKDIIPEIATTILECRSGMRKRKGKLNHIENKAETWLFFLGVDFEGKE 540
Query: 524 RLALSIAESVFGSTDLLFHIDM-----------------RKRNDGVSSHSEMLMGTLKNY 566
++A +A VFGS I + R R++ S+ E L L
Sbjct: 541 KIARELARLVFGSQSNFVSIGLSNFSSSRADSTEESKNKRARDELGCSYLERLGLALNEN 600
Query: 567 EKLVVLVEDIDLAD 580
V +ED+D D
Sbjct: 601 SHRVFFMEDVDGVD 614
>gi|224112493|ref|XP_002316209.1| predicted protein [Populus trichocarpa]
gi|222865249|gb|EEF02380.1| predicted protein [Populus trichocarpa]
Length = 628
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 87/391 (22%), Positives = 155/391 (39%), Gaps = 94/391 (24%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECK---------SAKKATWFLLQGNDTIGKRRLALS 528
L++ + E V WQ ++I I + + C+ S + WF G D GK+++A +
Sbjct: 219 LFRAVVERVGWQDEAIRIISQTIAHCRAINEKRQGASLRGDIWFSFCGPDRCGKKKIASA 278
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHS--------------------EMLMGTLKNYEK 568
+AE ++GS + D+ + DG+ +H + + G L
Sbjct: 279 LAEVIYGSRENFISADLSSQ-DGMVAHMVFDRPEMSGYTVKFRGKTMVDFVAGELCKKPL 337
Query: 569 LVVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTK-------GDSSN- 610
+V +E+ID AD Q K L+ +T F IFV T G SSN
Sbjct: 338 SIVFLENIDKADVQAQKSLSQAIQTGKFADSHGREVGISNAIFVTTSTLTEDKVGSSSND 397
Query: 611 ----YEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTID 666
EERI LK + +R + E + +P +K+ +S+ ++
Sbjct: 398 FSTYSEERI----------LKAKDWPMKILIERVLDEEMG-QVITPITAKKDIPSSIFLN 446
Query: 667 NVS-SGNKKDFSRQS-----------SFNTLDLNMKADDED----DEGEQKPGELSPISS 710
G ++ RQ S LDLN+ A + D D+G +S
Sbjct: 447 KRKLVGANQNLDRQEITEMVKRAHKMSARNLDLNLPAGENDLPDTDDG----------NS 496
Query: 711 DLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNF 770
D E+ + A GFL+ + R F + + L ++ F +I + ++
Sbjct: 497 DNDPESDISKAWLQGFLEQVDARVFFKPFDFD--ALAERILNEVNGCFHKIVGWECLLD- 553
Query: 771 SVEERVLEEVLIGSGFF-HNSLFEKWLKEVF 800
++ +V+E++L + N + E W+++V
Sbjct: 554 -IDPKVMEQLLAATYLSDQNRVVEDWVEQVL 583
>gi|357157735|ref|XP_003577897.1| PREDICTED: uncharacterized protein LOC100845733 [Brachypodium
distachyon]
Length = 1122
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 78/150 (52%), Gaps = 18/150 (12%)
Query: 460 LALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA--------KKATW 511
LA S+LS+S +L S L+KV+ Q +++ +I E + CKS K W
Sbjct: 698 LAAQGSDLSNSKQLVES-LFKVVGR----QEEALKAICESIAWCKSMERRRGANRKNDIW 752
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSH-----SEMLMGTLKNY 566
F G+D++ KR++ +++AE + GS + + ++D+ ++ G SS+ ++ ++ L
Sbjct: 753 FSFHGSDSMAKRKVGVALAELLHGSKENMIYLDLSPQDWGDSSYRGKTGTDCIVDELSKK 812
Query: 567 EKLVVLVEDIDLADPQFIKILADGFETENF 596
+ V+ ++++D AD L ET F
Sbjct: 813 RRSVIFLDNVDKADCLVQDTLIHASETGRF 842
Score = 47.4 bits (111), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 83/203 (40%), Gaps = 36/203 (17%)
Query: 201 VSEVGKLVSDCNSASSTRVWLMA-TASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLS 259
V+EV +++ + RVW+M +A+Y+TY+ + P L+ W LQ + I + +
Sbjct: 310 VAEVTRVLE--THRAGRRVWVMGWSATYETYLTFLSKFPLLDKDWELQLLPITAVRSAAA 367
Query: 260 LHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLN------C-----CAECTSNYEEE 308
+ + + FS+ PS + PF + + N C C C Y++E
Sbjct: 368 AGLMPLATTAVAFSKPPSFMESFVPFGGVTNDGYDANSLAANSCPQALRCQHCNDRYDQE 427
Query: 309 AQLFKSG--------QKKLLPPWLQPHSSSNAN--------QKDELV------EMRRKWN 346
G + LP LQ S N + D++V ++ KWN
Sbjct: 428 VATIIRGSGITAEDHHQGGLPSLLQNGSMIGPNNGFDALKVRDDQMVLKSKIRNLQTKWN 487
Query: 347 RSCHSLHQGRHTQSQFSSNLYNN 369
C LHQG ++ S L++N
Sbjct: 488 EYCLRLHQGCQRINRGSYQLFSN 510
>gi|297822717|ref|XP_002879241.1| hypothetical protein ARALYDRAFT_481905 [Arabidopsis lyrata subsp.
lyrata]
gi|297325080|gb|EFH55500.1| hypothetical protein ARALYDRAFT_481905 [Arabidopsis lyrata subsp.
lyrata]
Length = 1007
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 107/527 (20%), Positives = 202/527 (38%), Gaps = 86/527 (16%)
Query: 73 EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAP 132
E+ + + EV RK ++N ++VG C D + R + G +P E+ V+ +
Sbjct: 229 ENCRRIGEVLGRKDKKNPLLVGVCGGEALKTFTDSINRGKFGFLPLEISGLSVVSIEIS- 287
Query: 133 VTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIAS 192
EV ++ + + K D L + G ++ G+LK ++ S
Sbjct: 288 ---------EVLVDGSRIDIKFDDLGRLKSGMVLNLGELKV------------LTSDVFS 326
Query: 193 CYNPINHLVSEVGKLV---SDCNSASSTRVWLMAT-ASYQTYMKCQMRQPPLEIQWALQA 248
VS V K V SD S ++W + + +S +TY+K + P ++ W L
Sbjct: 327 --------VSVVEKFVLKLSDLLKLHSEKLWFIGSVSSNETYLKLIEKFPMIDKDWNLHL 378
Query: 249 VSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWETK-PFAIKEEEDHKLNCCAECTSNYEE 307
+ I S G+ SS+ S + F S + + PF+ + L C C YE+
Sbjct: 379 LPITSSSQGV-YPKSSLMGSFVPFGGFFSSTSDFRVPFS--NSMNQSLPRCHLCNEKYEQ 435
Query: 308 EAQLF-KSGQ------KKLLPPWL-----QPHSSSNANQKDE-------LVEMRRKWNRS 348
E F KSG + LP WL + S KD+ + +++KW+
Sbjct: 436 EVTAFAKSGSSLDDQCSEKLPSWLRNVEHEQDKGSLGKVKDDPNVLVSRIPALQKKWDDI 495
Query: 349 CHSLHQG--------RHTQSQFSSNLYNNQ-------SLTGKSCSYASTYPWWPSQSSIF 393
C +HQ + + QF L ++ S T +S T + + +
Sbjct: 496 CQRIHQTPAFPKLSFQPVRPQFPLQLVSSSQSKMSLGSSTEQSVRSIRTSESFQGTAQVQ 555
Query: 394 LDSNSISFAESAMKPHNSSNSVAKFRRQQ-SCSTIEFNFGNCTRKPQGVEPRLDSLKSNE 452
+ + KP ++ + ++ SC T + G SL+ +
Sbjct: 556 NPPHQPGLSLKISKPTHTEDLTSRTTNSPLSCVTTDLGLGTIYASKNQDSNTPVSLERKD 615
Query: 453 GKEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKA--- 509
+ +K +L K L ++L V +Q +++++I E++ + +
Sbjct: 616 FEVIKEKQSLVAPRYCKDFK----SLRELLSRKVGFQNEAVNAISEIVCGYRDESRRRNN 671
Query: 510 ------TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND 550
W L G D GK+++A ++A+ D +D + +++
Sbjct: 672 IATTSNVWLALLGPDKAGKKKVASALADVFCSGQDNFICVDFKSQDN 718
>gi|222615364|gb|EEE51496.1| hypothetical protein OsJ_32651 [Oryza sativa Japonica Group]
Length = 926
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 21/159 (13%)
Query: 460 LALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-------KKATWF 512
LA NS+LS+ KL L+KV V Q +++ +I E +V C+S + W
Sbjct: 533 LAAQNSDLSN-YKLLVERLFKV----VGRQEEALSAICESIVRCRSTESRRGPNRNDIWL 587
Query: 513 LLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-----EMLMGTLKNYE 567
G+D++ K+R+A+++AE + GS D L ++D+ ++ SS + ++ L
Sbjct: 588 CFHGSDSMAKKRIAVALAELMHGSKDNLIYLDLNLQDWDDSSFRGKTGIDCIVEQLSKKR 647
Query: 568 KLVVLVEDIDLADPQFIKILADGFETENF----GKVIFV 602
+ V+ +++ID AD L+D ++ F GKV+ +
Sbjct: 648 QSVLFLDNIDRADCLVQDSLSDAIKSGRFQDMRGKVVDI 686
Score = 40.4 bits (93), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 91/241 (37%), Gaps = 55/241 (22%)
Query: 156 SLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSAS 215
++ S G II GDLK V ++ A +V+EV +++ +
Sbjct: 97 AMASATSGLIISIGDLKQLVPDED-----------AEAQEKGRRVVAEVTRVLE--THSK 143
Query: 216 STRVWLMA-TASYQTYMKCQMRQPPLEIQWALQAVSIPS-------GGLGLSLHSSSVHE 267
RVW+M +A+Y+TY+ + P ++ W LQ + I + G +
Sbjct: 144 VGRVWVMGWSATYETYLAFLSKFPLVDKDWDLQLLPITAVHAAATAGPAAAAAGLMPPAT 203
Query: 268 SRLTFSQNPSQVWET-KPFA---IKEEEDHKLNC--------CAECTSNYEEEAQLFKSG 315
+ FS+ + + ++ PF E++ L C +C YE+E S
Sbjct: 204 TVAAFSKPAASLMDSFVPFGGFLCDNYEENSLTANSCPQALRCQQCNDKYEQEVATIISA 263
Query: 316 --------QKKLLPPWLQPHSSSNAN--------QKDELV------EMRRKWNRSCHSLH 353
+ LP LQ S N + D +V +R+KWN C LH
Sbjct: 264 SGITAEDHHQGGLPSLLQNGSMMGPNNGFDPVKARDDRMVLNSKILNLRKKWNEYCLRLH 323
Query: 354 Q 354
Q
Sbjct: 324 Q 324
>gi|356498951|ref|XP_003518309.1| PREDICTED: uncharacterized protein LOC100804458 [Glycine max]
Length = 1097
Score = 54.3 bits (129), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 99/449 (22%), Positives = 171/449 (38%), Gaps = 95/449 (21%)
Query: 463 GNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA---------KKATWFL 513
G +L+D L R +L E V WQ +I +I + L CKS + W
Sbjct: 678 GKFDLADFKSLNR-----LLNEKVGWQDQAIRAISQTLSLCKSGAGKRRGSHGRADIWLA 732
Query: 514 LQGNDTIGKRRLALSIAESVFGSTDLLFHIDM----------------RKRNDGVSSHSE 557
G D +GKR++A ++AE++FG+ + L +D+ + R V
Sbjct: 733 FLGPDRLGKRKIASALAETIFGNPESLISVDLGFQDGFYPLNSVFEYQKSRCYDVLRRKT 792
Query: 558 ML---MGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGDSSNYEER 614
+L G L VV +E++D AD L T F S ++
Sbjct: 793 ILDYIAGELSKKPHSVVFLENVDKADVLVQNSLLQALRTGKF-----------SYSHGRA 841
Query: 615 IENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEK-------EDATSVTIDN 667
I +++ +T V + N +F + + ++ R + EDA + N
Sbjct: 842 ISINNTIFVVTSTVCKGNDSFVLEESKMFSEERMLEAKRCQMQLLIGRASEDAKRIGGTN 901
Query: 668 VSSGNKKDFSRQSSFNT----------------------------LDLNMKADDEDDEGE 699
V +K FS+ SS N LDLNM +EGE
Sbjct: 902 VKVVPRKGFSKSSSLNKRKQADISDSKEGATSKMQKQDSEASRSFLDLNMPV----EEGE 957
Query: 700 QKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFD 759
+ + S ++ EN T+ LS+ F D I + VF + N+ + L ++ F
Sbjct: 958 EGVNDNDHESESMS-EN-TDAWLSD-FFDQIDEKVVFKPFNFNE--LAEQVLKRIGMLFQ 1012
Query: 760 EIFKRQNKVNFSVEERVLEEVLIGSGFF-HNSLFEKWLKEVFQTS-LEAVKIGGKGGGIE 817
F +++ ++ V+ +L + + E W++ V +EA +
Sbjct: 1013 RTFG--SELQLEIDHEVIAYILAAAWLSDKKNAVEDWIEHVLGKGFVEAQQKYHPAAQYV 1070
Query: 818 IRLCFGCKNDKVFANYGFGDSCLPKKIQI 846
++L C++ +F D CLP +I +
Sbjct: 1071 VKLV-NCES--IFVEEQAPDVCLPARINM 1096
>gi|77548259|gb|ABA91056.1| expressed protein [Oryza sativa Japonica Group]
Length = 1131
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 21/159 (13%)
Query: 460 LALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-------KKATWF 512
LA NS+LS+ KL L+KV V Q +++ +I E +V C+S + W
Sbjct: 714 LAAQNSDLSN-YKLLVERLFKV----VGRQEEALSAICESIVRCRSTESRRGPNRNDIWL 768
Query: 513 LLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-----EMLMGTLKNYE 567
G+D++ K+R+A+++AE + GS D L ++D+ ++ SS + ++ L
Sbjct: 769 CFHGSDSMAKKRIAVALAELMHGSKDNLIYLDLNLQDWDDSSFRGKTGIDCIVEQLSKKR 828
Query: 568 KLVVLVEDIDLADPQFIKILADGFETENF----GKVIFV 602
+ V+ +++ID AD L+D ++ F GKV+ +
Sbjct: 829 QSVLFLDNIDRADCLVQDSLSDAIKSGRFQDMRGKVVDI 867
Score = 40.0 bits (92), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 91/241 (37%), Gaps = 55/241 (22%)
Query: 156 SLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSAS 215
++ S G II GDLK V +++ +V+EV +++ +
Sbjct: 278 AMASATSGLIISIGDLKQLVPDEDAEAQEKGR-----------RVVAEVTRVLE--THSK 324
Query: 216 STRVWLMA-TASYQTYMKCQMRQPPLEIQWALQAVSIPS-------GGLGLSLHSSSVHE 267
RVW+M +A+Y+TY+ + P ++ W LQ + I + G +
Sbjct: 325 VGRVWVMGWSATYETYLAFLSKFPLVDKDWDLQLLPITAVHAAATAGPAAAAAGLMPPAT 384
Query: 268 SRLTFSQNPSQVWET-KPFA---IKEEEDHKLNC--------CAECTSNYEEEAQLFKSG 315
+ FS+ + + ++ PF E++ L C +C YE+E S
Sbjct: 385 TVAAFSKPAASLMDSFVPFGGFLCDNYEENSLTANSCPQALRCQQCNDKYEQEVATIISA 444
Query: 316 --------QKKLLPPWLQPHSSSNAN--------QKDELV------EMRRKWNRSCHSLH 353
+ LP LQ S N + D +V +R+KWN C LH
Sbjct: 445 SGITAEDHHQGGLPSLLQNGSMMGPNNGFDPVKARDDRMVLNSKILNLRKKWNEYCLRLH 504
Query: 354 Q 354
Q
Sbjct: 505 Q 505
>gi|356541735|ref|XP_003539329.1| PREDICTED: uncharacterized protein LOC100805591 [Glycine max]
Length = 825
Score = 53.9 bits (128), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 29/132 (21%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSA----------KKATWFLLQGNDTIGKRRLAL 527
LY +L E V WQ ++I++I + C+S + W G D +GKR++A
Sbjct: 414 LYHLLTEKVGWQDEAIYAINRTVSRCRSGAGKLSSGSHVRADIWLAFLGPDRLGKRKIAS 473
Query: 528 SIAESVFGSTDLLFHIDMRKRNDGVSSHS-------------------EMLMGTLKNYEK 568
++AE +FG+ L +D+ ++ S+S + + G L
Sbjct: 474 ALAEILFGNKQSLITVDLSSQDRCYPSYSIFEFQNSYCHDVLMRKTVLDYIAGELSKKPH 533
Query: 569 LVVLVEDIDLAD 580
VV +E++D AD
Sbjct: 534 SVVFLENVDQAD 545
>gi|422845089|ref|ZP_16891799.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
gi|325684709|gb|EGD26863.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
Length = 819
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 29/158 (18%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGK 522
S++ +L R L +L E V Q D++ ++ + +S K FL G +GK
Sbjct: 498 SENKRLAR--LEGILHERVIGQDDAVKAVANAIRRSRSGLKDENRPIGSFLFLGPTGVGK 555
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKL------------- 569
LA ++AE+VFGS D + +DM + D SS L+G+ Y
Sbjct: 556 TELAKAVAEAVFGSEDNIIRVDMSEYMDRESSSK--LIGSAPGYVGYEEGGQLSNKVREH 613
Query: 570 ---VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
VVL ++++ A+P+ +++L +GF T++ G+ +
Sbjct: 614 PYSVVLFDEVEKANPEIFNVLLRVLDEGFMTDSLGRKV 651
>gi|300812110|ref|ZP_07092558.1| putative negative regulator of genetic competence ClpC/MecB
[Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|300496949|gb|EFK32023.1| putative negative regulator of genetic competence ClpC/MecB
[Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
Length = 819
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 29/158 (18%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGK 522
S++ +L R L +L E V Q D++ ++ + +S K FL G +GK
Sbjct: 498 SENKRLAR--LEGILHERVIGQDDAVKAVANAIRRSRSGLKDENRPIGSFLFLGPTGVGK 555
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKL------------- 569
LA ++AE+VFGS D + +DM + D SS L+G+ Y
Sbjct: 556 TELAKAVAEAVFGSEDNIIRVDMSEYMDRESSSK--LIGSAPGYVGYEEGGQLSNKVREH 613
Query: 570 ---VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
VVL ++++ A+P+ +++L +GF T++ G+ +
Sbjct: 614 PYSVVLFDEVEKANPEIFNVLLRVLDEGFMTDSLGRKV 651
>gi|313123097|ref|YP_004033356.1| ATP-dependent clp protease, ATP-binding subunit [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
gi|312279660|gb|ADQ60379.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
Length = 819
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 29/158 (18%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGK 522
S++ +L R L +L E V Q D++ ++ + +S K FL G +GK
Sbjct: 498 SENKRLAR--LEGILHERVIGQDDAVKAVANAIRRSRSGLKDENRPIGSFLFLGPTGVGK 555
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKL------------- 569
LA ++AE+VFGS D + +DM + D SS L+G+ Y
Sbjct: 556 TELAKAVAEAVFGSEDNIIRVDMSEYMDRESSSK--LIGSAPGYVGYEEGGQLSNKVREH 613
Query: 570 ---VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
VVL ++++ A+P+ +++L +GF T++ G+ +
Sbjct: 614 PYSVVLFDEVEKANPEIFNVLLRVLDEGFMTDSLGRKV 651
>gi|225434576|ref|XP_002279036.1| PREDICTED: uncharacterized protein LOC100241532 [Vitis vinifera]
Length = 1106
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 75/184 (40%), Gaps = 38/184 (20%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSA---------KKATWFLLQGNDTIGKRRLALS 528
L++ L V WQ ++I +I + + C++ K W G D +GK+R+A +
Sbjct: 694 LWRALASKVGWQDEAICAISQTVSSCRTGNARRHGSNLKGDIWLSFLGPDKVGKKRIAAA 753
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHS--------------------EMLMGTLKNYEK 568
+AE +F S+ L +D+ ++ S+S + + G L+ +
Sbjct: 754 LAEIMFRSSKSLVSVDLGYQHGSNQSNSIFDQHELNSCGIEFRGKTITDYIAGELRKKPQ 813
Query: 569 LVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGDSSNYEERIENQDSVINMTLKV 628
LVV +E+ID AD L+ T F DS E I + V T K
Sbjct: 814 LVVFLENIDKADLLVQTSLSQAIRTGKF---------PDSHGREISINHMIFVTTATSKK 864
Query: 629 NERN 632
RN
Sbjct: 865 GNRN 868
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 129/314 (41%), Gaps = 57/314 (18%)
Query: 73 EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVER--GDV-PQELKQTHVIKFH 129
E+ + + EV RK +N +++G C S DAL F VER GDV P E+ ++I
Sbjct: 213 ENSRRIGEVLTRKTGKNPLLIGVCSS--DALRC-FADCVERRKGDVLPAEIAGLNLICIE 269
Query: 130 --FAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFN 187
+ R ++++ + L EL + + G G + G+LK V ++
Sbjct: 270 KEISEFVGRGGSEDKLGLKLKELGHMAEQYS--GPGIAVNFGELKALV-------GDDAP 320
Query: 188 GEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATA-SYQTYMKCQMRQPPLEIQWAL 246
GE AS +VS++ L+ + +WLM ++ SY+TY+K + P +E W L
Sbjct: 321 GEAAS------FVVSKLTSLLK-----AHPNLWLMGSSGSYETYLKFLTQFPSIEEDWDL 369
Query: 247 QAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIK---EEEDHKLNCCAECTS 303
+ I S + S S L S P + + P K + + C C
Sbjct: 370 HLLPITSSRSSVEGFCS---RSSLMGSFVPFAGFFSTPTDFKNPLNSTNQSITLCHLCNE 426
Query: 304 NYEEEAQLFKSGQKKL---------LPPWL---QPHSSSNANQ----------KDELVEM 341
E+E G + LP WL +P ++ A+ D+++ +
Sbjct: 427 KCEQEVSAILKGGSTISLADRYSGTLPSWLLMAEPDTNKGADAVKAKDDGRALNDKVLGV 486
Query: 342 RRKWNRSCHSLHQG 355
++KW C LH
Sbjct: 487 QKKWYDICQRLHHA 500
>gi|125578208|gb|EAZ19354.1| hypothetical protein OsJ_34905 [Oryza sativa Japonica Group]
Length = 892
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 83/159 (52%), Gaps = 21/159 (13%)
Query: 460 LALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKS-------AKKATWF 512
LA NS+LS+ KL L+KV V Q +++ +I E +V C+S ++ W
Sbjct: 476 LAAQNSDLSN-YKLLVERLFKV----VGRQEEAVSAICESIVRCRSTESRRGPSRNDIWL 530
Query: 513 LLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-----EMLMGTLKNYE 567
G+D++ K+R+A+++AE + GS + L ++D+ ++ SS + ++ L
Sbjct: 531 CFHGSDSMAKKRIAVALAELMHGSKENLIYLDLNLQDWDDSSFRGKTGIDCIVEQLSKKR 590
Query: 568 KLVVLVEDIDLADPQFIKILADGFETENF----GKVIFV 602
+ V+ +++ID AD L+D ++ F GKV+ +
Sbjct: 591 RSVLFLDNIDRADCLVQDSLSDAIKSGRFQDMRGKVVDI 629
Score = 40.0 bits (92), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 91/241 (37%), Gaps = 55/241 (22%)
Query: 156 SLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSAS 215
++ S G II GDLK V +++ N +V+EV +++ +
Sbjct: 40 AMASATSGLIISIGDLKQLVPDEDAEAQENGR-----------RVVAEVTRVLE--AHSK 86
Query: 216 STRVWLMA-TASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRL---- 270
RVW+M +A+Y+TY+ + P ++ W LQ + I + + + +
Sbjct: 87 VGRVWVMGWSATYETYLAFLSKFPLVDKDWDLQLLPITAVHAAPAAAGPAAAGGLMPPAT 146
Query: 271 ---TFSQNPSQVWET-KPFA---IKEEEDHKLNC--------CAECTSNYEEEAQLFKSG 315
FS+ + + ++ PF E++ L C +C YE+E S
Sbjct: 147 TVAAFSKPAASLMDSFVPFGGFLCDNYEENSLTANSCPQALRCQQCNDKYEQEVATIISA 206
Query: 316 --------QKKLLPPWLQPHSSSNANQKDELVEMR--------------RKWNRSCHSLH 353
+ LP LQ S N + V++R +KWN C LH
Sbjct: 207 SGITAEDHHQGGLPSLLQNGSMMGPNNGFDPVKVRDDRMVLNSKILNLQKKWNEYCLRLH 266
Query: 354 Q 354
Q
Sbjct: 267 Q 267
>gi|385815128|ref|YP_005851519.1| ATP-dependent clp protease ATP-binding subunit clpA-like protein
[Lactobacillus delbrueckii subsp. bulgaricus 2038]
gi|325125165|gb|ADY84495.1| ATP-dependent clp protease ATP-binding subunit clpA-like protein
[Lactobacillus delbrueckii subsp. bulgaricus 2038]
Length = 819
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 27/148 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L +L E V Q D++ ++ + +S K FL G +GK LA ++AE+
Sbjct: 506 LEGILHERVIGQDDAVKAVANAIRRSRSGLKDENRPIGSFLFLGPTGVGKTELAKAVAEA 565
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKL----------------VVLVEDI 576
VFGS D + IDM + D SS L+G+ Y VVL +++
Sbjct: 566 VFGSEDNIIRIDMSEYMDRESSSK--LIGSAPGYVGYEEGGQLSNKVREHPYSVVLFDEV 623
Query: 577 DLADPQ----FIKILADGFETENFGKVI 600
+ A+P+ +++L +GF T++ G+ +
Sbjct: 624 EKANPEIFNVLLRVLDEGFMTDSLGRKV 651
>gi|356551867|ref|XP_003544294.1| PREDICTED: chaperone protein ClpB-like [Glycine max]
Length = 1075
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 108/447 (24%), Positives = 179/447 (40%), Gaps = 96/447 (21%)
Query: 463 GNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA---------KKATWFL 513
G +L+D L R +L E V WQ +I +I + L CKS + W
Sbjct: 657 GKFDLADFKSLDR-----LLTEKVGWQDQAICAISQTLSLCKSGAGKRRGSNGRADIWLA 711
Query: 514 LQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS----------------- 556
G D +GKR++A +AE++FG+ + L +D+ ++ +S
Sbjct: 712 FLGPDRLGKRKIASVLAETIFGNPESLISVDLGFQDSFYPLNSVFEYQKSRCYDVLRRKT 771
Query: 557 --EMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENF----GKV------IFVLT 604
+ + G L VV +E++D AD L T F G+V IF++T
Sbjct: 772 ILDYIAGELSKKPHSVVFLENVDKADVLVQNSLLQAVRTGKFSYSHGRVISINNTIFLVT 831
Query: 605 ----KGDSSNY--------EERI-ENQDSVINMTL--------KVNERN-QNFDHKRKAE 642
KG+ S EERI E + + + L ++ N + K ++
Sbjct: 832 STVCKGNGSFVLEESKMFSEERILEAKRCQMQLLLGHASEDAGRIGSTNVKVVPGKGFSK 891
Query: 643 WEFANKTKSPRI-DEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGEQK 701
NK K I D KE ATS K+D ++S + LDLNM +D +EG
Sbjct: 892 SSSLNKRKQADISDSKEGATSKM-------QKQD--SEASRSYLDLNMPVED-GEEG--- 938
Query: 702 PGELSPISSDLTRENIT--NPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFD 759
++ D E+IT A + F D I + VF S N ++ L ++ F
Sbjct: 939 ------VNDDHESESITENTDAWLSDFFDQIDEKVVF--KSFNFDELAEEVLKRIGMLFQ 990
Query: 760 EIFKRQNKVNFSVEERVLEEVLIGSGFF-HNSLFEKWLKEVFQTS-LEAVKIGGKGGGIE 817
F +++ ++ V+ +L + + E W++ V +EA +
Sbjct: 991 RTFG--SELQLEIDYEVITHILAAAWLSDKKNAVEDWVEHVLGKGFVEAQQKYLPAAQYV 1048
Query: 818 IRLCFGCKNDKVFANYGFGDSCLPKKI 844
++L C++ +F D CLP +I
Sbjct: 1049 VKLV-NCES--IFVEEQAPDVCLPARI 1072
>gi|115486876|ref|NP_001065925.1| Os12g0104300 [Oryza sativa Japonica Group]
gi|108862072|gb|ABA95594.2| expressed protein [Oryza sativa Japonica Group]
gi|113648432|dbj|BAF28944.1| Os12g0104300 [Oryza sativa Japonica Group]
Length = 1129
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 82/157 (52%), Gaps = 21/157 (13%)
Query: 460 LALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKS-------AKKATWF 512
LA NS+LS+ KL L+KV+ Q +++ +I E +V C+S ++ W
Sbjct: 713 LAAQNSDLSN-YKLLVERLFKVVGR----QEEAVSAICESIVRCRSTESRRGPSRNDIWL 767
Query: 513 LLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-----EMLMGTLKNYE 567
G+D++ K+R+A+++AE + GS + L ++D+ ++ SS + ++ L
Sbjct: 768 CFHGSDSMAKKRIAVALAELMHGSKENLIYLDLNLQDWDDSSFRGKTGIDCIVEQLSKKR 827
Query: 568 KLVVLVEDIDLADPQFIKILADGFETENF----GKVI 600
+ V+ +++ID AD L+D ++ F GKV+
Sbjct: 828 RSVLFLDNIDRADCLVQDSLSDAIKSGRFQDMRGKVV 864
Score = 40.0 bits (92), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 91/241 (37%), Gaps = 55/241 (22%)
Query: 156 SLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSAS 215
++ S G II GDLK V +++ N +V+EV +++ +
Sbjct: 277 AMASATSGLIISIGDLKQLVPDEDAEAQENGR-----------RVVAEVTRVLE--AHSK 323
Query: 216 STRVWLMA-TASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRL---- 270
RVW+M +A+Y+TY+ + P ++ W LQ + I + + + +
Sbjct: 324 VGRVWVMGWSATYETYLAFLSKFPLVDKDWDLQLLPITAVHAAPAAAGPAAAGGLMPPAT 383
Query: 271 ---TFSQNPSQVWET-KPFA---IKEEEDHKLNC--------CAECTSNYEEEAQLFKSG 315
FS+ + + ++ PF E++ L C +C YE+E S
Sbjct: 384 TVAAFSKPAASLMDSFVPFGGFLCDNYEENSLTANSCPQALRCQQCNDKYEQEVATIISA 443
Query: 316 --------QKKLLPPWLQPHSSSNANQKDELVEMR--------------RKWNRSCHSLH 353
+ LP LQ S N + V++R +KWN C LH
Sbjct: 444 SGITAEDHHQGGLPSLLQNGSMMGPNNGFDPVKVRDDRMVLNSKILNLQKKWNEYCLRLH 503
Query: 354 Q 354
Q
Sbjct: 504 Q 504
>gi|449499195|ref|XP_004160747.1| PREDICTED: uncharacterized LOC101216395 [Cucumis sativus]
Length = 1109
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 122/313 (38%), Gaps = 68/313 (21%)
Query: 78 VFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGD---VPQELKQTHVIKFH--FAP 132
+ EV R + RN ++VG +S AL F +E+ + +P+EL I F+
Sbjct: 222 IGEVLGRNRGRNPLLVG--VSAYVALK-GFTNAIEKRNDNFLPEELAGVRTICLENDFSR 278
Query: 133 VTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIAS 192
+ + M E+ + V+ S G I+ GDLK V + +++
Sbjct: 279 YLSENSEMGSLNMKFVEVVQMVEQ--SPKPGLIVNFGDLKAFVGENSTDDR--------- 327
Query: 193 CYNPINHLVSEVGKLVSDCNSASSTRVWLM-ATASYQTYMKCQMRQPPLEIQWALQAVSI 251
+H+V ++ KLV +VWL+ A +SY+TY+ + P +E W L + I
Sbjct: 328 ----ASHVVGQLKKLVD----VHGDKVWLIGAASSYETYLSFVTKFPSIEKDWDLHLLPI 379
Query: 252 PSGGLGLSLHSSSVHESRLT--------FSQNPSQVWETKPFAIKEEEDHKLNCCAECTS 303
SL S S L F PS T P + + + C +C
Sbjct: 380 ------TSLRPESYPRSSLMGSFVPLGGFFSTPSDA--TIPLNVSYQHPSR---CLQCDK 428
Query: 304 NYEEEAQLFKSG---------QKKLLPPWLQPHSSSN-----ANQKDE-------LVEMR 342
+ EEE G + LP W+Q SN A +D+ + +
Sbjct: 429 SCEEEVIAASKGVFTPPLSEQYQSSLPSWMQMTELSNFDAFDAKTRDDGLVLSAKIAGFQ 488
Query: 343 RKWNRSCHSLHQG 355
+KW+ C LH G
Sbjct: 489 KKWDNICQRLHHG 501
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 61/123 (49%), Gaps = 20/123 (16%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECK----SAKKATWFLLQGNDTIGKRRLALSIAESV 533
L+++L+E V WQ ++ I + + + + + + WF G D GK+R+ +++AE +
Sbjct: 696 LFRLLKERVFWQDQAVSIISQTISQRQRHGSNLRGDIWFNFVGPDKFGKKRVGIAVAEIM 755
Query: 534 FGSTDLLFHIDMRKRNDGVSSHS----------------EMLMGTLKNYEKLVVLVEDID 577
+G+ D +D+ ++ V+ ++ + + L+ +V++E++D
Sbjct: 756 YGNKDQFICVDLSSQDGMVNPNTPRVRSYSAEFRGKTVLDFVAAELRKQPLSIVMLENVD 815
Query: 578 LAD 580
A+
Sbjct: 816 KAE 818
>gi|125548248|gb|EAY94070.1| hypothetical protein OsI_15846 [Oryza sativa Indica Group]
Length = 476
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 85/217 (39%), Gaps = 55/217 (25%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS-------------AKKATWFLLQGNDTIGKRR 524
L L++ VPWQ + + + +++C+S AK+ TW G D GK R
Sbjct: 219 LCAALEKEVPWQKEIVPEVASAVLQCRSGIAKRRDRSRSTEAKEETWLFFLGGDGHGKER 278
Query: 525 LALSIAESVFGSTDLLFHIDM--------------------RKRNDGVSSHSEMLMGTLK 564
+A +A VFGS + + R R SS SE + L
Sbjct: 279 VARELAGLVFGSRKSFLSVKLGASSSSPSASGSTEDHHRSKRPRTTTTSSASEAYLERL- 337
Query: 565 NYEKL------VVLVEDIDLADPQF---IKILAD-------GFETENFGKVIFVLTKGDS 608
Y+ + V+L+ED++ D ++ +K D + G I +L+
Sbjct: 338 -YDAVSENPHRVILIEDVEQGDHRWQVGVKEAIDRGVLRSQAGDEVGVGDAIIILS---C 393
Query: 609 SNYEERIENQDSVINMTLKVNERNQNF-DHKRKAEWE 644
++E R ++N +KV + N DH K E E
Sbjct: 394 ESFEARSRAGSPLMNKKMKVEKEEANTSDHDHKLEIE 430
>gi|116513529|ref|YP_812435.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|418029954|ref|ZP_12668471.1| hypothetical protein LDBUL1632_01265 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|116092844|gb|ABJ57997.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|354688417|gb|EHE88456.1| hypothetical protein LDBUL1632_01265 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 819
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 27/148 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L +L E V Q D++ ++ + +S K FL G +GK LA ++AE+
Sbjct: 506 LEGILHERVIGQDDAVKAVANAIRRSRSGLKDENRPIGSFLFLGPTGVGKTELAKAVAEA 565
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKL----------------VVLVEDI 576
VFGS D + +DM + D SS L+G+ Y VVL +++
Sbjct: 566 VFGSEDNIIRVDMSEYMDRESSSK--LIGSAPGYVGYEEGGQLSNKVREHPYSVVLFDEV 623
Query: 577 DLADPQ----FIKILADGFETENFGKVI 600
+ A+P+ +++L +GF T++ G+ +
Sbjct: 624 EKANPEIFNVLLRVLDEGFMTDSLGRKV 651
>gi|104773532|ref|YP_618512.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
gi|418035229|ref|ZP_12673687.1| hypothetical protein LDBUL1519_00387 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|103422613|emb|CAI97218.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
gi|354690647|gb|EHE90591.1| hypothetical protein LDBUL1519_00387 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 819
Score = 52.8 bits (125), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 27/148 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L +L E V Q D++ ++ + +S K FL G +GK LA ++AE+
Sbjct: 506 LEGILHERVIGQDDAVKAVANAIRRSRSGLKDENRPIGSFLFLGPTGVGKTELAKAVAEA 565
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKL----------------VVLVEDI 576
VFGS D + +DM + D SS L+G+ Y VVL +++
Sbjct: 566 VFGSEDNIIRVDMSEYMDRESSSK--LIGSAPGYVGYEEGGQLSNKVREHPYSVVLFDEV 623
Query: 577 DLADPQ----FIKILADGFETENFGKVI 600
+ A+P+ +++L +GF T++ G+ +
Sbjct: 624 EKANPEIFNVLLRVLDEGFMTDSLGRKV 651
>gi|218186254|gb|EEC68681.1| hypothetical protein OsI_37135 [Oryza sativa Indica Group]
Length = 1129
Score = 52.8 bits (125), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 83/159 (52%), Gaps = 21/159 (13%)
Query: 460 LALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKS-------AKKATWF 512
LA NS+LS+ KL L+KV+ Q +++ +I E +V C+S ++ W
Sbjct: 713 LAAQNSDLSN-YKLLVERLFKVVGR----QEEAMSAICESIVRCRSTESRRGPSRNDIWL 767
Query: 513 LLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-----EMLMGTLKNYE 567
G+D++ K+R+A+++AE + GS + L ++D+ ++ SS + ++ L
Sbjct: 768 CFHGSDSMAKKRIAVALAELMHGSKENLIYLDLNLQDWDDSSFRGKTGIDCIVEQLSKKR 827
Query: 568 KLVVLVEDIDLADPQFIKILADGFETENF----GKVIFV 602
+ V+ +++ID AD L+D ++ F GKV+ +
Sbjct: 828 RSVLFLDNIDRADCLVQDSLSDAIKSGRFQDMRGKVVDI 866
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 92/241 (38%), Gaps = 55/241 (22%)
Query: 156 SLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSAS 215
++ S G II GDLK V +++ N +V+EV +++ +
Sbjct: 277 AMASATSGLIISIGDLKQLVPDEDAEAQENGR-----------RVVAEVTRVLE--THSK 323
Query: 216 STRVWLMA-TASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRL---- 270
RVW+M +A+Y+TY+ + P ++ W LQ + I + + + +
Sbjct: 324 VGRVWVMGWSATYETYLAFLSKFPLVDKDWDLQLLPITAVHAAPAAAGPAAAGGLMPPAT 383
Query: 271 ---TFSQNPSQVWET-KPFA---IKEEEDHKLNC--------CAECTSNYEEEAQLFKSG 315
FS+ + + ++ PF E++ L C +C YE+E S
Sbjct: 384 TVAAFSKPAASLMDSFVPFGGFLCDNYEENSLTANSCPQALRCQQCNDKYEQEVATIISA 443
Query: 316 --------QKKLLPPWLQPHSSSNAN--------QKDELV------EMRRKWNRSCHSLH 353
+ LP LQ S N + D +V +R+KWN C LH
Sbjct: 444 SGITAEDHHQGGLPSLLQNGSMMGPNNGFDPVKVRDDRMVLNSKILNLRKKWNEYCLRLH 503
Query: 354 Q 354
Q
Sbjct: 504 Q 504
>gi|147865471|emb|CAN83664.1| hypothetical protein VITISV_031478 [Vitis vinifera]
Length = 828
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 30/133 (22%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSA-------------KKATWFLLQGNDTIGKRR 524
L L++ VPWQ D I I +++C+S K+ TWF QG D K +
Sbjct: 586 LCNALEKKVPWQKDIIPDIASTILQCRSGMVRRKGKVKNSETKEETWFFFQGVDMDAKEK 645
Query: 525 LALSIAESVFGSTDLLFHIDM-----------------RKRNDGVSSHSEMLMGTLKNYE 567
+A +A VFGS + I + R R++ S+ E + +
Sbjct: 646 IARELARLVFGSQNNFVSIALSSFSSTRADSTEDLRNKRSRDEQSCSYIERFAEAVGSNP 705
Query: 568 KLVVLVEDIDLAD 580
V L ED++ AD
Sbjct: 706 HRVFLAEDVEQAD 718
>gi|225440714|ref|XP_002275038.1| PREDICTED: chaperone protein ClpB1-like [Vitis vinifera]
Length = 848
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 30/133 (22%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSA-------------KKATWFLLQGNDTIGKRR 524
L L++ VPWQ D I I +++C+S K+ TWF QG D K +
Sbjct: 606 LCNALEKKVPWQKDIIPDIASTILQCRSGMVRRKGKVKNSETKEETWFFFQGVDMDAKEK 665
Query: 525 LALSIAESVFGSTDLLFHIDM-----------------RKRNDGVSSHSEMLMGTLKNYE 567
+A +A VFGS + I + R R++ S+ E + +
Sbjct: 666 IARELARLVFGSQNNFVSIALSSFSSTRADSTEDLRNKRSRDEQSCSYIERFAEAVGSNP 725
Query: 568 KLVVLVEDIDLAD 580
V L ED++ AD
Sbjct: 726 HRVFLAEDVEQAD 738
>gi|147866119|emb|CAN78825.1| hypothetical protein VITISV_006557 [Vitis vinifera]
Length = 1088
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 129/314 (41%), Gaps = 57/314 (18%)
Query: 73 EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVER--GDV-PQELKQTHVIKFH 129
E+ + + EV RK +N +++G C S DAL F VER GDV P E+ ++I
Sbjct: 213 ENSRRIGEVLTRKTGKNPLLIGVCSS--DALRC-FADCVERRKGDVLPAEIAGLNLICIE 269
Query: 130 --FAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFN 187
+ R ++++ + L EL + + G G + G+LK V ++
Sbjct: 270 KEISEFVGRGGSEDKLGLKLKELGHMAEQYS--GPGIAVNFGELKALV-------GDDAP 320
Query: 188 GEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATA-SYQTYMKCQMRQPPLEIQWAL 246
GE AS +VS++ L+ + +WLM ++ SY+TY+K + P +E W L
Sbjct: 321 GEAAS------XVVSKLTSLLK-----AHPNLWLMGSSGSYETYLKFLTQFPSIEEDWDL 369
Query: 247 QAVSIPSGGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIK---EEEDHKLNCCAECTS 303
+ I S + S S L S P + + P K + + C C
Sbjct: 370 HLLPITSSRSSVEGFCS---RSSLMGSFVPFAGFFSTPTDFKNPLNSTNQSITLCHLCNE 426
Query: 304 NYEEEAQLFKSGQKKL---------LPPWL---QPHSSSNANQ----------KDELVEM 341
E+E G + LP WL +P ++ A+ D+++ +
Sbjct: 427 KCEQEVSAILKGGSTISLADRYSGTLPSWLLMAEPDTNKGADAVKAKDDGRALNDKVLGV 486
Query: 342 RRKWNRSCHSLHQG 355
++KW C LH
Sbjct: 487 QKKWYDICQRLHHA 500
Score = 39.3 bits (90), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 57/146 (39%), Gaps = 29/146 (19%)
Query: 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS---------- 556
K W G D +GK+R+A ++AE +F S+ L +D+ ++ S+S
Sbjct: 714 KGDIWLSFLGPDKVGKKRIAAALAEIMFRSSXSLVSVDLGYQHGSNQSNSIFDQHELNSC 773
Query: 557 ----------EMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606
+ + G L+ + VV +E+ID AD L+ T F
Sbjct: 774 GIEFRGKTITDYIAGELRKKPQXVVFLENIDKADLLXQTSLSQAIRTGKF---------P 824
Query: 607 DSSNYEERIENQDSVINMTLKVNERN 632
DS E I + V T K RN
Sbjct: 825 DSHGREISINHMIFVTTATSKKGNRN 850
>gi|386856668|ref|YP_006260845.1| ATPase AAA-2 [Deinococcus gobiensis I-0]
gi|380000197|gb|AFD25387.1| ATPase AAA-2 [Deinococcus gobiensis I-0]
Length = 747
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 29/159 (18%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
S+ Q DL + LQ+ V Q D+I ++ L + + A FL G +GK
Sbjct: 433 SEETAAQLGDLDQNLQDQVYGQPDAIKALSSALRRARVGLGGRTRVAASFLFVGPSGVGK 492
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL------------ 569
LA ++A S+FGS L +DM + + SHS L+G+ Y
Sbjct: 493 THLAKALARSLFGSERALIRVDMSEFQE---SHSVSKLIGSPPGYVGFEQGGRLTEAVRR 549
Query: 570 ----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
V+L+++I+ A P F+++L DG T+ G+ +
Sbjct: 550 QPFSVILLDEIEKAHPDVYNTFLQVLDDGRLTDGLGRTV 588
>gi|375088305|ref|ZP_09734645.1| hypothetical protein HMPREF9703_00727 [Dolosigranulum pigrum ATCC
51524]
gi|374562343|gb|EHR33673.1| hypothetical protein HMPREF9703_00727 [Dolosigranulum pigrum ATCC
51524]
Length = 725
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 84/187 (44%), Gaps = 33/187 (17%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVEC-----KSAKKA 509
E+K + +G EL + + Q DL L E V Q ++I + + + K +
Sbjct: 405 EIKTGIPVG--ELKEKEQTQLRDLEDSLAEQVVGQAEAIEKVAKAIRRNRIGLRKKERPI 462
Query: 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE 557
FL G +GK LA S+A+ +FGS + L +DM + + G + E
Sbjct: 463 GSFLFLGPTGVGKTELAKSLAQELFGSKESLVRLDMSEYMEKHSTSRLIGSPPGYVGYDE 522
Query: 558 --MLMGTLKNYEKLVVLVEDIDLADP----QFIKILADGFETE------NFGKVIFVLT- 604
L T++ ++LV++I+ A P F++IL DG T+ NF + I ++T
Sbjct: 523 AGQLTETVRRNPYSLILVDEIEKAHPDVLNMFLQILDDGHLTDSQGRTVNFKETIIIMTS 582
Query: 605 -KGDSSN 610
G S N
Sbjct: 583 NAGSSDN 589
>gi|386725033|ref|YP_006191359.1| protein ClpE [Paenibacillus mucilaginosus K02]
gi|384092158|gb|AFH63594.1| ClpE [Paenibacillus mucilaginosus K02]
Length = 713
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 84/172 (48%), Gaps = 31/172 (18%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKA 509
E K + +G + ++AKL+ DL + L+ V Q +++ + + ++ K
Sbjct: 394 ERKTGIPVGKLQQDEAAKLK--DLARHLEAKVIGQPEAVRQVARAVRRSRAGLAPKNKPI 451
Query: 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY-- 566
FL G +GK L+ S+AE +FGS D + +DM ++ + HS L+G+ Y
Sbjct: 452 ASFLFVGPTGVGKTELSKSLAEELFGSADAMIRLDM---SEYMEKHSVSKLIGSPPGYVG 508
Query: 567 --------EKL------VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
E++ ++L+++I+ A P F+++L DG T++ G+ +
Sbjct: 509 HEEAGQLTERVRRNPYSIILLDEIEKAHPDVQHMFLQVLEDGRLTDSQGRTV 560
>gi|224098627|ref|XP_002311226.1| predicted protein [Populus trichocarpa]
gi|222851046|gb|EEE88593.1| predicted protein [Populus trichocarpa]
Length = 489
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECK---------SAKKATWFLLQGNDTIGKRRLALS 528
L++ + E V WQ ++I I + + CK S + WF G D GK+++A +
Sbjct: 79 LFRAVVERVGWQDEAIRVISQTIARCKARNEKRQGASLRGDIWFSFCGPDRRGKKKIASA 138
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHS--------------------EMLMGTLKNYEK 568
+AE ++GS + D+ ++ + +H + + G L
Sbjct: 139 LAEIIYGSRENFISADLSAQDGMIHTHMLFDHPEVNGYTVKLRGKTVVDFVAGELCKKPL 198
Query: 569 LVVLVEDIDLADPQFIKILADGFETENFG 597
+V +E+ID AD Q K L+ +T F
Sbjct: 199 SIVFLENIDKADVQAQKSLSHAIQTGKFA 227
>gi|356569527|ref|XP_003552951.1| PREDICTED: uncharacterized protein LOC100776148 [Glycine max]
Length = 1097
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 29/132 (21%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS----------AKKATWFLLQGNDTIGKRRLAL 527
Y +L E V WQ ++I++I + C+S + W G D +GKR++A
Sbjct: 693 FYHLLTEKVGWQDEAIYAINRTVSRCRSCAGKRSSGSHVRADIWLAFLGPDRLGKRKVAS 752
Query: 528 SIAESVFGSTDLLFHIDMRKRNDGVSSHS----------EMLM---------GTLKNYEK 568
++AE +FG+ L +D+ ++ ++S ++LM G L
Sbjct: 753 ALAEILFGNKQSLITVDLSSQDRSYPTNSIFEFQNTYCHDVLMRKTVLDYVAGELSKKPH 812
Query: 569 LVVLVEDIDLAD 580
VV +E++D AD
Sbjct: 813 SVVFLENVDQAD 824
>gi|225448447|ref|XP_002272110.1| PREDICTED: uncharacterized protein LOC100260392 [Vitis vinifera]
Length = 1105
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 138/329 (41%), Gaps = 63/329 (19%)
Query: 73 EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGD---VPQELKQTHVIKFH 129
E+ K + EV R K RN ++VG C DAL F VE+G +P E+ +I
Sbjct: 214 ENCKRIGEVLGRGKGRNPLLVGVC--AYDALQ-SFTEMVEKGRYNILPVEISGLSIICIE 270
Query: 130 FAPVTLRFMKKEEVEMNLTELKRKVDSLTS--VGGGAIIYTGDLKWTVDQQESNNNNNFN 187
LRF + + + +V L +G G ++ GDLK +D+ +++
Sbjct: 271 --KDVLRFFNENCDQGLINSRFEEVGVLVQHCLGAGLVVNFGDLKVFIDRDDASVGVV-- 326
Query: 188 GEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLM-ATASYQTYMKCQMRQPPLEIQWAL 246
+++VS++ +L+ +V LM A +SY+TY+K R P +E W L
Sbjct: 327 ----------SYVVSQLTRLLE----IHGGKVRLMGAVSSYETYLKFLNRYPSIEKDWDL 372
Query: 247 QAVSIPS--GGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNC---CAEC 301
Q + I S +G SS+ ES + P + + P +K + C +C
Sbjct: 373 QLLPITSLRPPMGEPYARSSLMESFV-----PLGGFFSSPCELKGQLSGSYQFTSRCHQC 427
Query: 302 TSNYEEE-AQLFKSG--------QKKLLPPWLQPHSSSN------ANQKDE--------L 338
E+E A L K G + LP WLQ A KD+ +
Sbjct: 428 NEKCEQEVAALSKGGFTASVADQYQPNLPAWLQMAELGKSTAFDVAKAKDDGMLLLNAKI 487
Query: 339 VEMRRKWNRSCHSLHQGRHTQSQFSSNLY 367
+ +++KW+ C L +HTQ ++ Y
Sbjct: 488 MGLQKKWDNICQRL---QHTQPFPKADFY 513
Score = 47.4 bits (111), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 31/133 (23%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECK---------SAKKATWFLLQGNDTIGKRRLALS 528
L++ L E + WQ ++I I E + C+ S K WF G D K+++A++
Sbjct: 696 LFRALTERIDWQHEAISVISETIAHCRLGNEKRHGASPKGDIWFNFVGPDRFSKKKIAVA 755
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHS---------------------EMLMGTLKNYE 567
+AE ++G + +D+ + DG+ S + + G L
Sbjct: 756 LAEILYGRRESFICVDLSSQ-DGMIHKSANHGSQEMNGYNVKFRGKNVVDYIAGELSKKP 814
Query: 568 KLVVLVEDIDLAD 580
VV +E++D AD
Sbjct: 815 LSVVFLENVDQAD 827
>gi|365851807|ref|ZP_09392222.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
parafarraginis F0439]
gi|363715748|gb|EHL99171.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
parafarraginis F0439]
Length = 830
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 74/149 (49%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L KVL + V Q ++I ++ + +S K F+L G +GK LA ++AE
Sbjct: 513 NLEKVLHQRVVGQEEAISAVSRSIRRARSGLKDPNRPIGSFMLLGPTGVGKTELAKAVAE 572
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
+VFGS D + +DM + + S+ L+G+ Y EK+ VVL ++
Sbjct: 573 AVFGSEDDMIRVDMSEYMEKYSTSR--LIGSAPGYVGYDEGGQLTEKVRQKPYSVVLFDE 630
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG+ T++ G+ I
Sbjct: 631 VEKAHPDVFNLLLQVLDDGYLTDSKGRKI 659
>gi|256844421|ref|ZP_05549907.1| ATPase [Lactobacillus crispatus 125-2-CHN]
gi|256613499|gb|EEU18702.1| ATPase [Lactobacillus crispatus 125-2-CHN]
Length = 826
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 27/152 (17%)
Query: 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALS 528
Q ++L K+L + V Q ++ ++ + +S K FL G +GK LA S
Sbjct: 509 QLANLEKILHQRVIGQDKAVSAVARAIRRSRSGIKDERRPIGSFLFLGPTGVGKTELAKS 568
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVL 572
+A ++FGS D L +DM + D ++S L+G+ Y EK+ V+L
Sbjct: 569 VAAAMFGSEDNLIRLDMSEYMDQIASSK--LIGSAPGYVGYEEGGQLSEKVRRHPYSVIL 626
Query: 573 VEDIDLADPQ----FIKILADGFETENFGKVI 600
+++++ A P +++L +GF T++ G+ +
Sbjct: 627 LDEVEKAHPDVFNLLLQVLDEGFLTDSKGRKV 658
>gi|227879235|ref|ZP_03997105.1| ATPase [Lactobacillus crispatus JV-V01]
gi|256849191|ref|ZP_05554624.1| ATPase [Lactobacillus crispatus MV-1A-US]
gi|262047207|ref|ZP_06020165.1| ATPase [Lactobacillus crispatus MV-3A-US]
gi|312978420|ref|ZP_07790162.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
crispatus CTV-05]
gi|423319631|ref|ZP_17297506.1| hypothetical protein HMPREF9250_01939 [Lactobacillus crispatus
FB049-03]
gi|423320347|ref|ZP_17298219.1| hypothetical protein HMPREF9249_00219 [Lactobacillus crispatus
FB077-07]
gi|227861129|gb|EEJ68778.1| ATPase [Lactobacillus crispatus JV-V01]
gi|256713967|gb|EEU28955.1| ATPase [Lactobacillus crispatus MV-1A-US]
gi|260572452|gb|EEX29014.1| ATPase [Lactobacillus crispatus MV-3A-US]
gi|310894763|gb|EFQ43835.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
crispatus CTV-05]
gi|405587924|gb|EKB61645.1| hypothetical protein HMPREF9250_01939 [Lactobacillus crispatus
FB049-03]
gi|405605997|gb|EKB78994.1| hypothetical protein HMPREF9249_00219 [Lactobacillus crispatus
FB077-07]
Length = 826
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 27/152 (17%)
Query: 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALS 528
Q ++L K+L + V Q ++ ++ + +S K FL G +GK LA S
Sbjct: 509 QLANLEKILHQRVIGQDKAVSAVARAIRRSRSGIKDERRPIGSFLFLGPTGVGKTELAKS 568
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVL 572
+A ++FGS D L +DM + D ++S L+G+ Y EK+ V+L
Sbjct: 569 VAAAMFGSEDNLIRLDMSEYMDQIASSK--LIGSAPGYVGYEEGGQLSEKVRRHPYSVIL 626
Query: 573 VEDIDLADPQ----FIKILADGFETENFGKVI 600
+++++ A P +++L +GF T++ G+ +
Sbjct: 627 LDEVEKAHPDVFNLLLQVLDEGFLTDSKGRKV 658
>gi|242082468|ref|XP_002441659.1| hypothetical protein SORBIDRAFT_08g000390 [Sorghum bicolor]
gi|241942352|gb|EES15497.1| hypothetical protein SORBIDRAFT_08g000390 [Sorghum bicolor]
Length = 1128
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 88/230 (38%), Gaps = 48/230 (20%)
Query: 161 GGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVW 220
G G I GDLK V + A + +V+EV +L+ +A+ VW
Sbjct: 281 GSGIIFTIGDLKDLVPDE------------ADLQDAARRVVAEVTRLLETHRAAARQTVW 328
Query: 221 LMA-TASYQTYMKCQMRQPPLEIQWALQAVSI-------PSGGLGLSLHSSSVHESRLTF 272
+M +A+Y+TY+ + P ++ W LQ + I P+ GL + L+
Sbjct: 329 VMGWSATYETYLAFLSKFPLVDKDWELQLLPITAVRDAGPAPGLVPPPAPVTT-VPALSM 387
Query: 273 SQNPSQVWETKPFAIKEEEDHKLNCCAE------CTSNYEEEAQLFKSG-------QKKL 319
S V PF + ++ N C + C YE+E G ++
Sbjct: 388 PATTSFVESFVPFGGFMCDTYEANSCPQALRCQQCNDRYEQEVATIIRGSGITAEAHQEG 447
Query: 320 LPPWLQPHSSSNAN--------QKDELV------EMRRKWNRSCHSLHQG 355
LP L S N + D +V +++KWN C LHQG
Sbjct: 448 LPSMLHNGSMMGPNNGFDALKVRDDHMVLSTKIQNLKKKWNEYCLRLHQG 497
Score = 47.0 bits (110), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 17/135 (12%)
Query: 479 YKVLQEN----VPWQFDSIHSIVEVLVECKSA--------KKATWFLLQGNDTIGKRRLA 526
YK+L E V Q +++ +I +V C+S K WF G D+I KRR+A
Sbjct: 715 YKLLMERLFKAVGRQEEALSAICASIVRCRSMERHRGANKKNDIWFSFYGPDSIAKRRVA 774
Query: 527 LSIAESVFGSTDLLFHIDMRKRNDGVSS-----HSEMLMGTLKNYEKLVVLVEDIDLADP 581
+++AE + S++ L ++D+ + G + ++ + L+ + V+ ++++D AD
Sbjct: 775 VALAELMHSSSENLIYLDLSLHDWGNPNFRGKRATDCISEELRKKRRSVIFLDNVDKADC 834
Query: 582 QFIKILADGFETENF 596
+ L ET +
Sbjct: 835 LVQESLIHAMETGRY 849
>gi|94985317|ref|YP_604681.1| ATPase AAA [Deinococcus geothermalis DSM 11300]
gi|94555598|gb|ABF45512.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Deinococcus
geothermalis DSM 11300]
Length = 745
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 29/159 (18%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD + Q SDL + LQE V Q ++I ++ L + + + FL G +GK
Sbjct: 432 SDESAGQLSDLEEQLQEQVYGQPEAIKALSSALRRARVGLGGRTRVSASFLFVGPSGVGK 491
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL------------ 569
LA ++A+++FGS L +DM + + +HS L+G+ Y
Sbjct: 492 THLAKALAKTLFGSERSLIRVDMSEFQE---AHSISKLIGSPPGYVGFEQGGRLTEAVRR 548
Query: 570 ----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
V+L+++I+ A P F+++L DG T+ G+ +
Sbjct: 549 QPFSVILLDEIEKAHPDVYNTFLQVLDDGRLTDGLGRTV 587
>gi|293380369|ref|ZP_06626440.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
crispatus 214-1]
gi|290923052|gb|EFD99983.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
crispatus 214-1]
Length = 826
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 27/152 (17%)
Query: 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALS 528
Q ++L K+L + V Q ++ ++ + +S K FL G +GK LA S
Sbjct: 509 QLANLEKILHQRVIGQDKAVSAVARAIRRSRSGIKDERRPIGSFLFLGPTGVGKTELAKS 568
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVL 572
+A ++FGS D L +DM + D ++S L+G+ Y EK+ V+L
Sbjct: 569 VAAAMFGSEDNLIRLDMSEYMDQIASSK--LIGSAPGYVGYEEGGQLSEKVRRHPYSVIL 626
Query: 573 VEDIDLADPQ----FIKILADGFETENFGKVI 600
+++++ A P +++L +GF T++ G+ +
Sbjct: 627 LDEVEKAHPDVFNLLLQVLDEGFLTDSKGRKV 658
>gi|413915851|gb|AFW55783.1| hypothetical protein ZEAMMB73_843327 [Zea mays]
Length = 1120
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 19/157 (12%)
Query: 459 TLALGNSELSDSAKLQRSDL--YKVLQEN----VPWQFDSIHSIVEVLVECKSA------ 506
T A G + Q DL YK+L E+ V Q +++ +I +V C+S
Sbjct: 693 TSAFGQWQRPSPLATQSFDLSNYKLLMEHLFKVVGRQEEALSAICASIVRCRSMERRRGA 752
Query: 507 --KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSS-----HSEML 559
K WF G D+I KRR+ +++AE + GS+ L ++D+ + G S ++ +
Sbjct: 753 NKKNDIWFSFYGPDSIAKRRVGVALAELMHGSSGNLIYLDLSLNDWGNPSFRGKRATDCI 812
Query: 560 MGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENF 596
L+ + V+ +++ID AD + L ET +
Sbjct: 813 FEELRKKRRSVIFLDNIDKADCLVQESLIHAMETGRY 849
>gi|224106239|ref|XP_002314097.1| predicted protein [Populus trichocarpa]
gi|222850505|gb|EEE88052.1| predicted protein [Populus trichocarpa]
Length = 1063
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 142/352 (40%), Gaps = 81/352 (23%)
Query: 78 VFEVFLRK--KRRNTVIVGDCLSITDALVFDFMGRVERGDV-PQELKQTHVIK-----FH 129
+ E +R+ K RN ++VG S D + + +G V P E+ VI H
Sbjct: 227 IGEALVRREGKGRNLLLVGVYASNALKGFVDSVNKDNKGGVLPSEISGVSVISVEDEVIH 286
Query: 130 FAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGE 189
F V+ KE++ + EL ++++ + G G ++ GDLK V +
Sbjct: 287 F--VSEGGGDKEKMRLKFDELGQELERCS--GPGIVVNIGDLKVLVGEN----------- 331
Query: 190 IASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATA-SYQTYMKCQMRQPPLEIQWALQA 248
C + +++LVS++ L+ ++WL+ A SY TY+K R +E W L+
Sbjct: 332 --VCRDALSYLVSKLTGLLEGFRE----KIWLVGAADSYDTYLKSVGRFSGVEKDWDLRI 385
Query: 249 VSI-----PSGGLGLSLHSSSVHESRLTFSQNPSQVWETKP--FAIKEEE-DHKLNCCAE 300
+ I P GG G +S L S P + + P F I + + C
Sbjct: 386 LPITSYKSPIGGFGT--------KSSLLGSFVPFGGFFSTPSDFKIPSNSINQSITRCHL 437
Query: 301 CTSNYEEE-AQLFKSGQ--------KKLLPPWLQPHSSSNANQKD-------------EL 338
C + YE++ A + K G + LP LQ D ++
Sbjct: 438 CNAKYEQDVAAILKMGPTISVAEQCSENLPSSLQMAELDTRKAVDMVKTKDDGTSLNAKI 497
Query: 339 VEMRRKWNRSCHSLHQGRHTQ--SQFSSNLYNNQS--------LTGKSCSYA 380
+ ++ +W+ C LH H Q S+F + +Q+ LTGK C+ +
Sbjct: 498 LGLQNRWDDICQRLH---HAQPFSKFDVSQATSQAAIAEGFQYLTGKYCAVS 546
Score = 43.5 bits (101), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 58/260 (22%), Positives = 103/260 (39%), Gaps = 49/260 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS---------AKKATWFLLQGNDTIGKRRLALS 528
+ + L E V WQ + +I E + CK+ +K F G D IGK+++A +
Sbjct: 668 VMRALSEQVGWQDRATLAISEAVSRCKAGHGRHHGSNSKGDISFAFLGPDRIGKKKIASA 727
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHS-------------------EMLMGTLKNYEKL 569
+A +FGS +D+ SS+S + + L
Sbjct: 728 LAMVMFGSIQSFVSMDLGSHGKVNSSNSMLESQELHDDELGRSTTFVDYIASKLSKKPHS 787
Query: 570 VVLVEDIDLADPQFIKILADGFETENF----------GKVIFV----LTKGDSSNYEERI 615
++ +E++D ADP L+ T F IFV +T G+++ ER
Sbjct: 788 LIFLENVDKADPLVQNSLSYALRTGKFPDSRGREVSTNSTIFVATSTITVGNTNLLSER- 846
Query: 616 ENQDSVINMTLKVNERNQNFDHKRKAE--WEFANKTKSPRIDEKEDATSVTIDNVSSGNK 673
I + ++ R +++ + E E A K+ S K D TS +++ S+
Sbjct: 847 ----ETIRFSEEMILRAKSWQMQILVEHVAEAATKSISSGNKRKLDVTSDSMEQESTCES 902
Query: 674 KDFSRQSSFNTLDLNMKADD 693
+ + + LDLN+ +D
Sbjct: 903 SKRAHKPLRSYLDLNLPVED 922
>gi|295692152|ref|YP_003600762.1| atpase aaa-2 domain protein [Lactobacillus crispatus ST1]
gi|295030258|emb|CBL49737.1| ATPase AAA-2 domain protein [Lactobacillus crispatus ST1]
Length = 826
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 27/152 (17%)
Query: 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALS 528
Q ++L K+L + V Q ++ ++ + +S K FL G +GK LA S
Sbjct: 509 QLANLEKILHQRVIGQDKAVSAVARAIRRSRSGIKDERRPIGSFLFLGPTGVGKTELAKS 568
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVL 572
+A ++FGS D L +DM + D ++S L+G+ Y EK+ V+L
Sbjct: 569 VAAAMFGSEDNLVRLDMSEYMDQIASSK--LIGSAPGYVGYEEGGQLSEKVRRHPYSVIL 626
Query: 573 VEDIDLADPQ----FIKILADGFETENFGKVI 600
+++++ A P +++L +GF T++ G+ +
Sbjct: 627 LDEVEKAHPDVFNLLLQVLDEGFLTDSKGRKV 658
>gi|335356603|ref|ZP_08548473.1| negative regulator of genetic competence [Lactobacillus animalis
KCTC 3501]
Length = 830
Score = 50.1 bits (118), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 33/158 (20%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAES 532
L K+L + V Q ++I SI + + +S + F+ G +GK LA ++AE+
Sbjct: 513 LEKILHQRVVGQDEAISSIAKAIRRSRSGLSDPTRPIGSFMFLGPTGVGKTELAKALAEA 572
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDI 576
+FGS D + +DM + + S+ L+G Y EK+ VVL++++
Sbjct: 573 MFGSEDAMIRVDMSEYMEKYSTSR--LVGAPPGYVGYDEGGQLSEKVRNKPYSVVLLDEV 630
Query: 577 DLADPQ----FIKILADGFETE------NFGKVIFVLT 604
+ A P +++L DG+ T+ NF I ++T
Sbjct: 631 EKAHPDVFNILLQVLDDGYLTDSKGRKVNFRNTIIIMT 668
>gi|89099328|ref|ZP_01172205.1| ATP-dependent Clp protease-like (class III stress gene) [Bacillus
sp. NRRL B-14911]
gi|89085937|gb|EAR65061.1| ATP-dependent Clp protease-like (class III stress gene) [Bacillus
sp. NRRL B-14911]
Length = 708
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 31/225 (13%)
Query: 399 ISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGKEVKI 458
IS A+ + AK R Q+ I N + R P +++ E E K
Sbjct: 342 ISAAKEEVLKKEDYEKAAKLREQEIKLEIALNNDSAKR------PVVEAGHIQEIIERKT 395
Query: 459 TLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKAT-----WFL 513
+ +G + + +K++ +L K L E V Q +++ + + + ++ K+ FL
Sbjct: 396 GIPVGKIQQDEQSKMK--NLEKSLSEKVIGQEEAVKKVAKAVRRSRAGLKSKNRPIGSFL 453
Query: 514 LQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--ML 559
G +GK L ++AE +FGS D + +DM + + G H E L
Sbjct: 454 FVGPTGVGKTELTKTLAEELFGSKDSMIRLDMSEYMEKHSISKIIGSPPGYVGHDEAGQL 513
Query: 560 MGTLKNYEKLVVLVEDIDLADP----QFIKILADGFETENFGKVI 600
++ ++L+++I+ A P F++IL DG T++ G+ +
Sbjct: 514 TEKVRRNPYSIILLDEIEKAHPDVQHMFLQILEDGRLTDSQGRTV 558
>gi|297721297|ref|NP_001173011.1| Os02g0537800 [Oryza sativa Japonica Group]
gi|255670974|dbj|BAH91740.1| Os02g0537800 [Oryza sativa Japonica Group]
Length = 686
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 199 HLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGL 258
H V+EV L VWL+ +YQT ++C+ P LE W L +++P+G L L
Sbjct: 114 HAVAEVRALACG-GGGGGGGVWLVGHGTYQTNIRCRTGHPSLETLWGLHTLAVPAGSLAL 172
Query: 259 SL 260
SL
Sbjct: 173 SL 174
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 16/76 (21%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSA----------------KKATWFLLQGNDTIG 521
L L++ VPWQ + I ++ C+S K+ TW L G D G
Sbjct: 402 LCGALEKEVPWQKVIVPEIASTVLRCRSGMAAPAMARRSSSCSSSKEHTWMLFLGGDADG 461
Query: 522 KRRLALSIAESVFGST 537
K R+A +A VFGS+
Sbjct: 462 KLRVARELASLVFGSS 477
>gi|222623004|gb|EEE57136.1| hypothetical protein OsJ_07038 [Oryza sativa Japonica Group]
Length = 663
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 199 HLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGL 258
H V+EV L VWL+ +YQT ++C+ P LE W L +++P+G L L
Sbjct: 114 HAVAEVRALACG-GGGGGGGVWLVGHGTYQTNIRCRTGHPSLETLWGLHTLAVPAGSLAL 172
Query: 259 SL 260
SL
Sbjct: 173 SL 174
>gi|379722287|ref|YP_005314418.1| protein ClpE [Paenibacillus mucilaginosus 3016]
gi|378570959|gb|AFC31269.1| ClpE [Paenibacillus mucilaginosus 3016]
Length = 712
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 83/172 (48%), Gaps = 31/172 (18%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKA 509
E K + +G + ++AKL+ DL + L+ V Q +++ + + ++ K
Sbjct: 393 ERKTGIPVGKLQQDEAAKLK--DLARHLEAKVIGQPEAVRQVARAVRRSRAGLAPKNKPI 450
Query: 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY-- 566
FL G +GK L+ S+AE +FG D + +DM ++ + HS L+G+ Y
Sbjct: 451 ASFLFVGPTGVGKTELSKSLAEELFGRADAMIRLDM---SEYMEKHSVSKLIGSPPGYVG 507
Query: 567 --------EKL------VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
E++ ++L+++I+ A P F+++L DG T++ G+ +
Sbjct: 508 HEEAGQLTERVRRNPYSIILLDEIEKAHPDVQHMFLQVLEDGRLTDSQGRTV 559
>gi|357461271|ref|XP_003600917.1| Chaperone protein clpB [Medicago truncatula]
gi|355489965|gb|AES71168.1| Chaperone protein clpB [Medicago truncatula]
Length = 1081
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 18/120 (15%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKKAT----------WFLLQGNDTIGKRRLAL 527
L++ L + V WQ ++I +I++ +V C S K A W G D GK+++A+
Sbjct: 690 LFEALSKAVRWQDEAIRAIIKTIV-CGSTKSAKDHGLNQRGDKWMNFVGPDRHGKKKIAV 748
Query: 528 SIAESVFGSTDLLFHIDM-RKRNDGVS------SHSEMLMGTLKNYEKLVVLVEDIDLAD 580
S+AE ++GS + +D+ K +G + SH + L+ VV +E++D AD
Sbjct: 749 SLAELLYGSRENFTFVDLSSKEMNGCNVKFRGKSHLDFLVDECCKKPLSVVFIENVDKAD 808
Score = 47.8 bits (112), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 82/185 (44%), Gaps = 35/185 (18%)
Query: 73 EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVER---GDVPQELKQTHVIKFH 129
E+ + + E+ +R K +N +++G C + DAL F VE+ G +P EL VI
Sbjct: 223 ENFRRIGEILVRSKGKNPLLLGACGN--DALR-SFTEAVEKRREGVLPLELDGLRVICIG 279
Query: 130 FAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGE 189
L E V + L ++ V+ VG G I+ G+LK V N++ F
Sbjct: 280 ---KELESGDCEVVSLKLKQIAAIVEE--CVGPGVIVSFGELKSFV-----NDDGGF--- 326
Query: 190 IASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATA-SYQTYMKCQMRQPPLEIQWALQA 248
V E+GKL+ + WL A SY++Y+K R P +E W LQ
Sbjct: 327 -----------VEELGKLLK----IHYDKFWLAGAADSYESYLKFLGRFPSVEKDWDLQI 371
Query: 249 VSIPS 253
+ I S
Sbjct: 372 LPITS 376
>gi|337749338|ref|YP_004643500.1| protein ClpE [Paenibacillus mucilaginosus KNP414]
gi|336300527|gb|AEI43630.1| ClpE [Paenibacillus mucilaginosus KNP414]
Length = 712
Score = 48.9 bits (115), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 83/172 (48%), Gaps = 31/172 (18%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKA 509
E K + +G + ++AKL+ DL + L+ V Q +++ + + ++ K
Sbjct: 393 ERKTGIPVGKLQQDEAAKLK--DLARHLEAKVIGQPEAVRQVARAVRRSRAGLAPKNKPI 450
Query: 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY-- 566
FL G +GK L+ S+AE +FG D + +DM ++ + HS L+G+ Y
Sbjct: 451 ASFLFIGPTGVGKTELSKSLAEELFGHADAMIRLDM---SEYMEKHSVSKLIGSPPGYVG 507
Query: 567 --------EKL------VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
E++ ++L+++I+ A P F+++L DG T++ G+ +
Sbjct: 508 HEEAGQLTERVRRNPYSIILLDEIEKAHPDVQHMFLQVLEDGRLTDSQGRTV 559
>gi|392374710|ref|YP_003206543.1| chaperone [Candidatus Methylomirabilis oxyfera]
gi|258592403|emb|CBE68712.1| Chaperone [Candidatus Methylomirabilis oxyfera]
Length = 810
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 29/160 (18%)
Query: 466 ELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTI 520
E +SAKL R + + L + V Q ++I S+ + ++ K+ F+ G +
Sbjct: 488 EEEESAKLMRME--QDLTKRVVGQIEAIESVSRAIRRSRAGIKSPSRPVGSFIFLGPTGV 545
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL- 569
GK LA ++AE +FG+ D L +DM + + S+ L+G Y EK+
Sbjct: 546 GKTELAKALAEFLFGTEDALIRVDMSEYMERFSTSR--LIGAPPGYIGYDDSGQLTEKVR 603
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
V+L+++I+ A P+ ++I DG T+++G+++
Sbjct: 604 RRPFSVILLDEIEKAHPEVFNLLLQIFEDGRLTDSYGRIV 643
>gi|313890361|ref|ZP_07823992.1| chaperone protein ClpB [Streptococcus pseudoporcinus SPIN 20026]
gi|416851448|ref|ZP_11908593.1| Clp amino terminal domain protein [Streptococcus pseudoporcinus LQ
940-04]
gi|313121204|gb|EFR44312.1| chaperone protein ClpB [Streptococcus pseudoporcinus SPIN 20026]
gi|356738937|gb|EHI64169.1| Clp amino terminal domain protein [Streptococcus pseudoporcinus LQ
940-04]
Length = 813
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 15/150 (10%)
Query: 2 REAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHAL 61
R+A +S TIK E + + + GG FS P SS + + F ++
Sbjct: 154 RQAAYSKETIKAIYE------LRKPKKTKAGGTFSDMMKPPSSAG----DLSDFTRDLTQ 203
Query: 62 FSSQ---KPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQ 118
+SQ +P +++I + +V RK + N V+VGD AL + R+ G +P
Sbjct: 204 MASQGLLEPVIGREKEITRMVQVLSRKTKNNPVLVGDAGVGKTALAYGLAQRIVEGAIPY 263
Query: 119 ELKQTHVIKFHFAPVT--LRFMKKEEVEMN 146
EL+ V++ V RF E MN
Sbjct: 264 ELQDMRVLELDMMSVVAGTRFRGDFEERMN 293
>gi|402297897|ref|ZP_10817634.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Bacillus
alcalophilus ATCC 27647]
gi|401726867|gb|EJT00077.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Bacillus
alcalophilus ATCC 27647]
Length = 718
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 84/172 (48%), Gaps = 31/172 (18%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW--- 511
E K + +G + +++ K++ +L L E V Q +++ + + + ++ KA
Sbjct: 400 EKKTGIPVGKIQKNETTKMK--NLAPRLAEKVIGQVEAVEKVAKAIRRSRAGLKAKHRPI 457
Query: 512 --FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY-- 566
FL G +GK L ++AE +FGS D + +DM ++ + HS L+G+ Y
Sbjct: 458 GSFLFVGPTGVGKTELTKTLAEELFGSKDAMIRLDM---SEYMEKHSVSKLIGSPPGYVG 514
Query: 567 --------EKL------VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
EK+ ++L+++I+ A P F++IL DG T++ G+ +
Sbjct: 515 HEEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQILEDGHLTDSQGRKV 566
>gi|218290044|ref|ZP_03494211.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius LAA1]
gi|218239878|gb|EED07066.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius LAA1]
Length = 812
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L K+L E V Q +++ ++ + + ++ K F+ G +GK LA ++AE
Sbjct: 500 NLEKILHERVIGQDEAVEAVAKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 559
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
++FG D L IDM ++ + HS L+G+ Y EK+ VVL++
Sbjct: 560 ALFGDEDALIRIDM---SEYMERHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLD 616
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P+ +++L DG T+ G+ +
Sbjct: 617 EIEKAHPEVFNILLQVLDDGRLTDGKGRTV 646
>gi|258512699|ref|YP_003186133.1| ATPase AAA-2 domain-containing protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257479425|gb|ACV59744.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 812
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L K+L E V Q +++ ++ + + ++ K F+ G +GK LA ++AE
Sbjct: 500 NLEKILHERVIGQDEAVEAVAKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 559
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
++FG D L IDM ++ + HS L+G+ Y EK+ VVL++
Sbjct: 560 ALFGDEDALIRIDM---SEYMERHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLD 616
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P+ +++L DG T+ G+ +
Sbjct: 617 EIEKAHPEVFNILLQVLDDGRLTDGKGRTV 646
>gi|384136760|ref|YP_005519474.1| ATPase [Alicyclobacillus acidocaldarius subsp. acidocaldarius
Tc-4-1]
gi|339290845|gb|AEJ44955.1| ATPase AAA-2 domain protein [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 812
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 74/150 (49%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L K+L E V Q +++ ++ + + ++ K F+ G +GK LA ++AE
Sbjct: 500 NLEKILHERVIGQDEAVEAVAKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 559
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
++FG D L IDM ++ + HS L+G+ Y EK+ VVL++
Sbjct: 560 ALFGDEDALIRIDM---SEYMERHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLD 616
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P+ +++L DG T+ G+ +
Sbjct: 617 EIEKAHPEVFNILLQVLDDGRLTDGKGRTV 646
>gi|335998580|ref|ZP_08564491.1| ATP-binding Clp protease subunit [Lactobacillus ruminis SPM0211]
gi|335348435|gb|EGM49941.1| ATP-binding Clp protease subunit [Lactobacillus ruminis SPM0211]
Length = 834
Score = 48.5 bits (114), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 33/159 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
+L K+L + V Q ++I ++ + + +S + F+ G +GK LA ++AE
Sbjct: 511 NLEKILHKRVVGQDEAIKAVSKAIRRARSGLSDPTRPIGSFMFLGPTGVGKTELAKALAE 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 571 AMFGSEDAMIRIDMSEYMEKYSTSR--LIGAPPGYVGYDEGGQLTEKVRNKPYSVVLLDE 628
Query: 576 IDLADPQ----FIKILADGFETE------NFGKVIFVLT 604
++ A P +++L DG+ T+ NF I ++T
Sbjct: 629 VEKAHPDVFNILLQVLDDGYLTDSKGRKVNFRNTIIIMT 667
>gi|332522720|ref|ZP_08398972.1| negative regulator of genetic competence ClpC/MecB [Streptococcus
porcinus str. Jelinkova 176]
gi|332313984|gb|EGJ26969.1| negative regulator of genetic competence ClpC/MecB [Streptococcus
porcinus str. Jelinkova 176]
Length = 813
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 61/149 (40%), Gaps = 13/149 (8%)
Query: 2 REAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSS--EAHHFINPNTFWQNH 59
R+A +S IK E + + S GG FS P+SS E F T +
Sbjct: 154 RQAAYSKEIIKAIYE------LRKPKKSKAGGTFSDMMKPASSAGELSDFTRDLTQMASQ 207
Query: 60 ALFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQE 119
L +P ++I + +V RK + N V+VGD AL + R+ G +P E
Sbjct: 208 GLL---EPVIGRDKEITRMVQVLSRKTKNNPVLVGDAGVGKTALAYGLAQRIVEGAIPYE 264
Query: 120 LKQTHVIKFHFAPVTL--RFMKKEEVEMN 146
L+ V++ V RF E MN
Sbjct: 265 LQDMRVLELDMMSVVAGTRFRGDFEERMN 293
>gi|392529183|ref|ZP_10276320.1| class III stress response-like ATPase, AAA+ superfamily protein
[Carnobacterium maltaromaticum ATCC 35586]
Length = 830
Score = 48.5 bits (114), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L KVL V Q D++ ++ + +S K F+ G +GK LA ++AE
Sbjct: 511 NLEKVLHSRVVGQKDAVSAVSRAMRRARSGLKDPNRPIGSFMFLGPTGVGKTELAKALAE 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
S+FGS D L +DM + + S+ L+G+ Y EK+ VVL+++
Sbjct: 571 SMFGSEDALIRVDMSEYMEKYSTSR--LIGSPPGYVGYDEGGQLTEKIRQKPYSVVLLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 629 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 657
>gi|336113612|ref|YP_004568379.1| ATPase AAA-2 domain-containing protein [Bacillus coagulans 2-6]
gi|335367042|gb|AEH52993.1| ATPase AAA-2 domain protein [Bacillus coagulans 2-6]
Length = 718
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 31/185 (16%)
Query: 442 EPRLDSLKSNEGKEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLV 501
+P +D + E E K + +G E ++ KLQ L + L + V Q +++ + + +
Sbjct: 389 KPVVDVTQIQEIVEKKTGIPVGKLEADEAKKLQH--LEENLAKKVIGQDEAVRKVAKAIR 446
Query: 502 ECKSAKKATW-----FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS 556
++ KA FL G +GK L +AE +FG+ D + +DM ++ + HS
Sbjct: 447 RSRAGLKAKSRPIGSFLFVGPTGVGKTELTKRLAEELFGTKDAMIRLDM---SEYMEKHS 503
Query: 557 -EMLMGTLKNY----------EKL------VVLVEDIDLADP----QFIKILADGFETEN 595
L+G Y EK+ ++L+++I+ A P F++IL DG T+
Sbjct: 504 VSKLIGAPAGYVGYEDAGQLTEKVRRNPYSIILLDEIEKAHPDVLNMFLQILDDGRLTDA 563
Query: 596 FGKVI 600
G+ +
Sbjct: 564 QGRTV 568
>gi|347524765|ref|YP_004831513.1| ATP-binding Clp protease subunit [Lactobacillus ruminis ATCC 27782]
gi|345283724|gb|AEN77577.1| ATP-binding Clp protease subunit [Lactobacillus ruminis ATCC 27782]
Length = 834
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 33/159 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
+L K+L + V Q ++I ++ + + +S + F+ G +GK LA ++AE
Sbjct: 511 NLEKILHKRVVGQDEAIKAVSKAIRRARSGLSDPTRPIGSFMFLGPTGVGKTELAKALAE 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 571 AMFGSEDAMIRIDMSEYMEKYSTSR--LIGAPPGYVGYDEGGQLTEKVRNKPYSVVLLDE 628
Query: 576 IDLADPQ----FIKILADGFETE------NFGKVIFVLT 604
++ A P +++L DG+ T+ NF I ++T
Sbjct: 629 VEKAHPDVFNILLQVLDDGYLTDSKGRKVNFRNTIIIMT 667
>gi|421892761|ref|ZP_16323365.1| putative ATP-dependent Clp proteinase (ATP-binding subunit)
[Streptococcus pyogenes NS88.2]
gi|379981467|emb|CCG27087.1| putative ATP-dependent Clp proteinase (ATP-binding subunit)
[Streptococcus pyogenes NS88.2]
Length = 699
Score = 48.1 bits (113), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM K ND + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDLFGSKDAIIRLDMSKYNDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 506 NNNTLTERVRRNPYAIVLLDEIEKADPQIITLLLQVLDDGRLTDGQGNTI 555
>gi|347750689|ref|YP_004858254.1| ATPase AAA [Bacillus coagulans 36D1]
gi|347583207|gb|AEO99473.1| ATPase AAA-2 domain protein [Bacillus coagulans 36D1]
Length = 718
Score = 48.1 bits (113), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 31/184 (16%)
Query: 443 PRLDSLKSNEGKEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVE 502
P +D + E E K + +G E ++ KLQ L + L + V Q +++ + + +
Sbjct: 390 PVVDVTQIQEIVEKKTGIPVGKLEADEAKKLQH--LEENLAKKVIGQEEAVRKVAKAIRR 447
Query: 503 CKSAKKATW-----FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS- 556
++ KA FL G +GK L +AE +FG+ D + +DM ++ + HS
Sbjct: 448 SRAGLKAQSRPIGSFLFVGPTGVGKTELTKRLAEELFGTKDAMIRLDM---SEYMEKHSV 504
Query: 557 EMLMGTLKNY----------EKL------VVLVEDIDLADP----QFIKILADGFETENF 596
L+G Y EK+ ++L+++I+ A P F++IL DG T+
Sbjct: 505 SKLIGAPAGYVGYEDAGQLTEKVRHNPYSIILLDEIEKAHPDVLNMFLQILDDGRLTDAQ 564
Query: 597 GKVI 600
G+ +
Sbjct: 565 GRTV 568
>gi|297736601|emb|CBI25472.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 134/324 (41%), Gaps = 79/324 (24%)
Query: 73 EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAP 132
E+ K + EV R K RN ++VG C DAL F VE+G +++ P
Sbjct: 214 ENCKRIGEVLGRGKGRNPLLVGVC--AYDALQ-SFTEMVEKG------------RYNILP 258
Query: 133 VTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIAS 192
V + EEV + + +G G ++ GDLK +D+ +++
Sbjct: 259 VEISGF--EEVGVLVQH---------CLGAGLVVNFGDLKVFIDRDDASVGVV------- 300
Query: 193 CYNPINHLVSEVGKLVSDCNSASSTRVWLM-ATASYQTYMKCQMRQPPLEIQWALQAVSI 251
+++VS++ +L+ +V LM A +SY+TY+K R P +E W LQ + I
Sbjct: 301 -----SYVVSQLTRLLE----IHGGKVRLMGAVSSYETYLKFLNRYPSIEKDWDLQLLPI 351
Query: 252 PS--GGLGLSLHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNC---CAECTSNYE 306
S +G SS+ ES + P + + P +K + C +C E
Sbjct: 352 TSLRPPMGEPYARSSLMESFV-----PLGGFFSSPCELKGQLSGSYQFTSRCHQCNEKCE 406
Query: 307 EE-AQLFKSG--------QKKLLPPWLQPHSSSN------ANQKDE--------LVEMRR 343
+E A L K G + LP WLQ A KD+ ++ +++
Sbjct: 407 QEVAALSKGGFTASVADQYQPNLPAWLQMAELGKSTAFDVAKAKDDGMLLLNAKIMGLQK 466
Query: 344 KWNRSCHSLHQGRHTQSQFSSNLY 367
KW+ C L +HTQ ++ Y
Sbjct: 467 KWDNICQRL---QHTQPFPKADFY 487
Score = 46.6 bits (109), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECK---------SAKKATWFLLQGNDTIGKRRLALS 528
L++ L E + WQ ++I I E + C+ S K WF G D K+++A++
Sbjct: 670 LFRALTERIDWQHEAISVISETIAHCRLGNEKRHGASPKGDIWFNFVGPDRFSKKKIAVA 729
Query: 529 IAESVFGSTDLLFHIDMRKRND 550
+AE ++G + +D+ +++
Sbjct: 730 LAEILYGRRESFICVDLSSQDE 751
>gi|168010434|ref|XP_001757909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690786|gb|EDQ77151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1030
Score = 48.1 bits (113), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 78/174 (44%), Gaps = 34/174 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECK---------SAKKATWFLLQGNDTIGKRRLALS 528
++K L E V WQ +I +I +V + +AK TW LL G D +GKR +A +
Sbjct: 603 VHKGLMEKVVWQGKAISTISTFIVNAQTGRGELRGGAAKAGTWLLLLGPDQVGKRLIAGA 662
Query: 529 IAESVFGST-------DLLFHIDMRKRN--DGVSSHSEMLMGTLKNYEKL----VVLVED 575
+AE V G DL + RK DG+ + ++ + + V+L+ED
Sbjct: 663 LAELVVGVAAKPIYFGDLGYSRWGRKVEEIDGMQYRGRTAVDSIADALRAKPLSVLLLED 722
Query: 576 IDLA----DPQFIKILADG-FETENFGKV-----IFVLTK--GDSSNYEERIEN 617
ID A + ++ + G F N G V I ++T G +SN + EN
Sbjct: 723 IDQAVSVIRTKLMRAMVTGKFSDSNGGHVSVGNSIIIMTSRLGANSNLGKGKEN 776
>gi|414085563|ref|YP_006994274.1| torsin family protein [Carnobacterium maltaromaticum LMA28]
gi|412999150|emb|CCO12959.1| torsin family protein [Carnobacterium maltaromaticum LMA28]
Length = 365
Score = 48.1 bits (113), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 27/147 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L KVL V Q D++ ++ + +S K F+ G +GK LA ++AE
Sbjct: 46 NLEKVLHSRVVGQEDAVSAVSRAMRRARSGLKDPNRPIGSFMFLGPTGVGKTELAKALAE 105
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
S+FGS D L +DM + + S+ L+G+ Y EK+ VVL+++
Sbjct: 106 SMFGSEDALIRVDMSEYMEKYSTSR--LIGSPPGYVGYDEGGQLTEKIRQKPYSVVLLDE 163
Query: 576 IDLADPQ----FIKILADGFETENFGK 598
++ A P +++L DG T+ G+
Sbjct: 164 VEKAHPDVFNILLQVLDDGHLTDAKGR 190
>gi|295425660|ref|ZP_06818347.1| ATPase [Lactobacillus amylolyticus DSM 11664]
gi|295064676|gb|EFG55597.1| ATPase [Lactobacillus amylolyticus DSM 11664]
Length = 824
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 27/150 (18%)
Query: 476 SDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIA 530
++L +L E V Q ++ ++ + +S K FL G +GK LA S+A
Sbjct: 511 ANLEAILHERVIGQDKAVSAVARAIRRSRSGIKDERRPIGSFLFLGPTGVGKTELAKSVA 570
Query: 531 ESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVE 574
++FGS D + IDM + D V+S L+G+ Y E++ VVL++
Sbjct: 571 AAMFGSEDNMIRIDMSEYMDPVASSK--LIGSAPGYVGYEEGGQLSEQVRRHPYSVVLLD 628
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+++ A P +++L +GF T++ G+ +
Sbjct: 629 EVEKAHPDVFNLLLQVLDEGFLTDSKGRKV 658
>gi|260665251|ref|ZP_05866100.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Lactobacillus
jensenii SJ-7A-US]
gi|260560988|gb|EEX26963.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Lactobacillus
jensenii SJ-7A-US]
Length = 671
Score = 48.1 bits (113), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 28/161 (17%)
Query: 465 SEL-SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVE---CKSAKKATW-FLLQGNDT 519
SEL +D AK + DL K L+ V Q +I I + + K A + T FLL G
Sbjct: 362 SELHADEAK-KNLDLAKKLKNVVIDQDKAIDIITDAIARKQVFKDANRPTGSFLLTGPTG 420
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL 569
+GK LA +A+ +FG +D L +DM + D ++ + L+G+ Y EK+
Sbjct: 421 VGKTELAKQLAKELFGGSDHLIRLDMSEYQDQMAVNK--LIGSAPGYVGYGEGGQLTEKV 478
Query: 570 ------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++L+++I+ A+PQ ++IL DG T+ G+ +
Sbjct: 479 RHEPYSLILLDEIEKANPQVFNALLQILDDGRLTDAQGRTV 519
Score = 41.6 bits (96), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 81/190 (42%), Gaps = 32/190 (16%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P + I V E+ R+K+ N V++G ++V R+ GDVP +L++ H+
Sbjct: 61 PVIGRDDQINAVIEILSRRKKNNPVLIGPAGVGKTSIVEGLAQRIASGDVPDKLRKMHIY 120
Query: 127 KFHF----APVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNN 182
+ + A +LR +E++ +KV L I++ +L V +++
Sbjct: 121 ELNINDMVAGSSLRGSFEEKI--------KKVIDLAQKDPNTILFIDELHNIVGAGSTDS 172
Query: 183 NNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEI 242
NN +G+ A+ P + +S + L+ + Y + + + P L
Sbjct: 173 ENN-SGDAANILKP----------------ALASGDLKLIGATTTSEYRQIE-KDPALAR 214
Query: 243 QWALQAVSIP 252
++ QAV +P
Sbjct: 215 RF--QAVDVP 222
>gi|238855441|ref|ZP_04645751.1| chaperone protein ClpB [Lactobacillus jensenii 269-3]
gi|313472729|ref|ZP_07813217.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Lactobacillus
jensenii 1153]
gi|238831931|gb|EEQ24258.1| chaperone protein ClpB [Lactobacillus jensenii 269-3]
gi|239529301|gb|EEQ68302.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Lactobacillus
jensenii 1153]
Length = 679
Score = 47.8 bits (112), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 28/161 (17%)
Query: 465 SEL-SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVE---CKSAKKATW-FLLQGNDT 519
SEL +D AK + DL K L+ V Q +I I + + K A + T FLL G
Sbjct: 370 SELHADEAK-KNLDLAKKLKNVVIDQDKAIDIITDAIARKQVFKDANRPTGSFLLTGPTG 428
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL 569
+GK LA +A+ +FG +D L +DM + D ++ + L+G+ Y EK+
Sbjct: 429 VGKTELAKQLAKELFGGSDHLIRLDMSEYQDQMAVNK--LIGSAPGYVGYGEGGQLTEKV 486
Query: 570 ------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++L+++I+ A+PQ ++IL DG T+ G+ +
Sbjct: 487 RHEPYSLILLDEIEKANPQVFNALLQILDDGRLTDAQGRTV 527
Score = 41.6 bits (96), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 81/190 (42%), Gaps = 32/190 (16%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P + I V E+ R+K+ N V++G ++V R+ GDVP +L++ H+
Sbjct: 69 PVIGRDDQINAVIEILSRRKKNNPVLIGPAGVGKTSIVEGLAQRIASGDVPDKLRKMHIY 128
Query: 127 KFHF----APVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNN 182
+ + A +LR +E++ +KV L I++ +L V +++
Sbjct: 129 ELNINDMVAGSSLRGSFEEKI--------KKVIDLAQKDPNTILFIDELHNIVGAGSTDS 180
Query: 183 NNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEI 242
NN +G+ A+ P + +S + L+ + Y + + + P L
Sbjct: 181 ENN-SGDAANILKP----------------ALASGDLKLIGATTTSEYRQIE-KDPALAR 222
Query: 243 QWALQAVSIP 252
++ QAV +P
Sbjct: 223 RF--QAVDVP 230
>gi|336055111|ref|YP_004563398.1| ATP-dependent protease [Lactobacillus kefiranofaciens ZW3]
gi|333958488|gb|AEG41296.1| ATP-dependent protease [Lactobacillus kefiranofaciens ZW3]
Length = 706
Score = 47.8 bits (112), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 26/160 (16%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK----SAKKATWFLLQGNDTI 520
SEL + DL K L++NV Q +I I + + + + + FLL G +
Sbjct: 378 SELHADEAQKNIDLAKKLKQNVIDQDKAIDVITDAIARKQVFKDNDRPTGSFLLTGPTGV 437
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL- 569
GK LA +A +FGS D L +DM + D ++ + L+G+ Y EK+
Sbjct: 438 GKTELAKQLAIQLFGSKDHLIRLDMSEYQDEMAVNK--LIGSAPGYVGYGEGGQLTEKVR 495
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++L ++I+ A+PQ ++I+ DG T+ G+ +
Sbjct: 496 HEPYSLILFDEIEKANPQVFNALLQIMDDGRLTDAQGRTV 535
>gi|331703595|ref|YP_004400282.1| ATP dependent Clp protease ATP binding subunit [Mycoplasma mycoides
subsp. capri LC str. 95010]
gi|328802150|emb|CBW54304.1| ATP dependent Clp protease ATP binding subunit [Mycoplasma mycoides
subsp. capri LC str. 95010]
Length = 713
Score = 47.4 bits (111), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 112/589 (19%), Positives = 227/589 (38%), Gaps = 87/589 (14%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P +E+I V ++ RK + N V++G+ A+V R+ +GDVP LK ++
Sbjct: 31 PVIGREEEISRVIQILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPTLLKNKRIL 90
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNF 186
+ + M + E + +K V+ + G I++ +L V ++ NN+
Sbjct: 91 ELDMGSLMAGAMYMGDYE---SRVKAVVNEIQKSNGEIILFIDELHLIVGAGKTGNNSGM 147
Query: 187 NGEIASCYNPINHLVSEVGKLVS-DCNSASSTRVWLMATASYQ-TYMKCQMRQPPLEIQW 244
+ +++ P G+L + + + R ++ A+ + + + + +P ++
Sbjct: 148 D--VSNLLKP----ALARGELKAIGSTTLNEYRQYIEKDAALERRFQRVLVSEPTID--- 198
Query: 245 ALQAVSIPSGGLGL--SLHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCAECT 302
Q +SI G + H +H++ L + S + T + + D CA
Sbjct: 199 --QTISILRGLKDRFETYHGVRIHDNALVSAAKLSSRYITDRYLPDKAIDLVDEACASIR 256
Query: 303 SNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQKDELVEMRRKWNRSCHSLHQGRHTQSQF 362
+ +K++ L+ +S+ +KD+ + + +W + L + Q+
Sbjct: 257 TELASVPIELDQVNRKVM--QLEIETSALEKEKDD--KSKERWQEAKKELDSLKIEQASL 312
Query: 363 SSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSISFA---ESAMKPHNSSNSVAKFR 419
+ + + S S+ + + + A + ++ P N +A F
Sbjct: 313 NEKWEKEKEELSRINSVKSSIESLKQELETAQNDGNYKRAGEIQYSLLPSLEKN-LALFE 371
Query: 420 RQQSCSTI-----EFNFGNCTRKPQGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQ 474
+Q I E K G+ +D L S+E +++ L
Sbjct: 372 KQTGSKMISEEVTEHEIAKVVSKSTGI--LVDRLISSEKEKL----------------LN 413
Query: 475 RSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSI 529
DL L++ V Q +I ++ ++ +S K FL G +GK +A S+
Sbjct: 414 LEDL---LKKYVKGQDQAIKAVTSAIMRSRSGIKNPDKPIGSFLFLGPTGVGKTEVARSL 470
Query: 530 AESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL----------------VVL 572
A+ +F S + +DM ++ + HS L+G Y +VL
Sbjct: 471 ADILFNSPKKMIRLDM---SEYMEKHSVAKLIGAPPGYVGYEEGGRLTEAVRRNPYSIVL 527
Query: 573 VEDIDLADPQ----FIKILADGFETENFGK------VIFVLTKGDSSNY 611
++I+ A ++IL DG T++ GK I V+T +S Y
Sbjct: 528 FDEIEKAHTDVFNILLQILDDGRLTDSLGKTIDFKNTIIVMTSNIASQY 576
>gi|356569296|ref|XP_003552839.1| PREDICTED: uncharacterized protein LOC100786125 [Glycine max]
Length = 942
Score = 47.4 bits (111), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 11/78 (14%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKKA----------TWFLLQGNDTIGKRRLAL 527
L++VL + V WQ +++ +I++ +V C K+ W G+D +GK+++A+
Sbjct: 551 LFEVLSKEVTWQDEALRAIIKTIV-CSPTKRVKHRGPNQPGDIWMNFVGSDRLGKKKIAV 609
Query: 528 SIAESVFGSTDLLFHIDM 545
S+AE ++GS + +D+
Sbjct: 610 SLAELLYGSRESFIFVDL 627
>gi|357490799|ref|XP_003615687.1| ATP-dependent Clp protease ATP-binding subunit clpL [Medicago
truncatula]
gi|355517022|gb|AES98645.1| ATP-dependent Clp protease ATP-binding subunit clpL [Medicago
truncatula]
Length = 1092
Score = 47.4 bits (111), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 92/222 (41%), Gaps = 45/222 (20%)
Query: 160 VGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRV 219
+G G ++ G+++ V ++ +G C I +VSE+G+L+ +V
Sbjct: 298 LGAGVVVGFGEIEVLV-------GDDVDG---GC---IKFVVSELGRLLE----VYGEKV 340
Query: 220 WLMATA-SYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGL-SLHS-SSVHESRLTFSQNP 276
WLM A + + Y K P +E W L V++ S + L+S SS+ S + F
Sbjct: 341 WLMGVAETSEAYSKFLRLFPGVEKDWDLHLVTVTSATPSMEGLYSKSSLMGSFVPFGGFF 400
Query: 277 SQVWETK-PFAIKEEEDHKLNCCAECTSNYEEE-AQLFKSGQKKLLP------PWLQ--- 325
S E+K P + + C +C YE+E A FK L PW +
Sbjct: 401 STPPESKSPIS---SANASFTRCDKCNEKYEQEVADAFKVDPATLASNYTTSLPWFKKVV 457
Query: 326 ---PHSS--------SNANQKDELVEMRRKWNRSCHSLHQGR 356
H N + D+++ ++KWN C LHQ R
Sbjct: 458 DVDTHGGLDVAKVNEENTSLNDKILGFQKKWNDICQRLHQAR 499
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSA---------KKATWFLLQGNDTIGKRRLALS 528
L K+L E V WQ +I I L KS + WF G D IGK+++A +
Sbjct: 681 LNKLLFEKVGWQNQAICDINRTLSLHKSGEGKSRDLHGRADIWFAFLGPDRIGKKKIASA 740
Query: 529 IAESVFGSTDLLFHIDM 545
+AE++FG+T+ + +D+
Sbjct: 741 LAETIFGNTESIISLDL 757
>gi|326520325|dbj|BAK07421.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 431
Score = 47.4 bits (111), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 102/244 (41%), Gaps = 40/244 (16%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS-------------AKKATWFLLQGNDTIGKRR 524
L L++ VPWQ + + I +++C+S AK+ TW G D GK R
Sbjct: 186 LCAALEKEVPWQKEIVPEIASTVLQCRSGIAKRRDKSRSTDAKEETWMFFLGGDADGKER 245
Query: 525 LALSIAESVFGSTDLLFHIDMRKRNDGVSSHSE------MLMGTLKNYEKLVVLVEDIDL 578
+A +A VFGS I + + S +E T E + + D
Sbjct: 246 VASELANLVFGSRKNFVSIKLGASSTSASCSTEEHRSKRPRTSTASEGEAYLERLYDAVS 305
Query: 579 ADPQFIKILADGFETENFGKVIFVLTKGDS----SNYEERIENQDSVINMTLKVNERNQN 634
+P + IL D FE + + + DS S + + D+++ + ++
Sbjct: 306 ENPHRV-ILMDNFEQADQYCQVGIKEAIDSGVIRSQTGDEVGVSDAIVILCC------ES 358
Query: 635 FDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDE 694
FD K +A ++ TK R + KE + T+D+ + K+ SS L+LN++ +
Sbjct: 359 FDSKSRA---CSSPTKQMRPEIKE---AHTVDD----DHKEAETSSSCFDLNLNIENEHA 408
Query: 695 DDEG 698
D+ G
Sbjct: 409 DERG 412
>gi|320334126|ref|YP_004170837.1| ATPase AAA-2 domain-containing protein [Deinococcus maricopensis
DSM 21211]
gi|319755415|gb|ADV67172.1| ATPase AAA-2 domain protein [Deinococcus maricopensis DSM 21211]
Length = 744
Score = 47.4 bits (111), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 29/159 (18%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD+ Q +DL L E V Q D+I ++ L K + A FL G +GK
Sbjct: 431 SDTQFTQMTDLEGDLAEQVYGQPDAIRALSSALRRAKVGLGGRTRVAASFLFVGPSGVGK 490
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL------------ 569
LA ++A S+FGS + DM + + SHS L+G+ Y
Sbjct: 491 THLAKALARSLFGSERSMIRFDMSEFQE---SHSISKLIGSPPGYVGYEQGGRLTESVRR 547
Query: 570 ----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
V+L+++I+ A P F+++ DG T+ G+ +
Sbjct: 548 QPFSVILLDEIEKAHPDVYNAFLQVFDDGRLTDGLGRTV 586
>gi|22329388|ref|NP_172200.2| P-loop containing nucleoside triphosphate hydrolase domain and
Clp-N motif-containing protein [Arabidopsis thaliana]
gi|20260490|gb|AAM13143.1| unknown protein [Arabidopsis thaliana]
gi|30725704|gb|AAP37874.1| At1g07200 [Arabidopsis thaliana]
gi|332189970|gb|AEE28091.1| P-loop containing nucleoside triphosphate hydrolase domain and
Clp-N motif-containing protein [Arabidopsis thaliana]
Length = 422
Score = 47.4 bits (111), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
Query: 423 SCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQRSDLYKVL 482
SC T +F G + K+ K + +TL NS L + + L ++L
Sbjct: 18 SCVTTDFGLGVI------YASKNQESKTTREKPMLVTL---NSSLEHTYQKDFKSLREIL 68
Query: 483 QENVPWQFDSIHSIVEVLVECKS------AKKATWFLLQGNDTIGKRRLALSIAESVFG 535
V WQ +++++I +++ CK+ W L G D +GK+++A++++E FG
Sbjct: 69 SRKVAWQTEAVNAISQIICGCKTDSTRRNQASGIWLALLGPDKVGKKKVAMTLSEVFFG 127
>gi|336055406|ref|YP_004563693.1| ATPase [Lactobacillus kefiranofaciens ZW3]
gi|333958783|gb|AEG41591.1| ATPase [Lactobacillus kefiranofaciens ZW3]
Length = 828
Score = 47.4 bits (111), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 27/152 (17%)
Query: 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALS 528
Q ++L +L + V Q ++ ++ + +S K FL G+ +GK LA S
Sbjct: 511 QLANLEGILHKRVIGQDKAVSAVARAIRRSRSGIKDERRPIGSFLFLGSTGVGKTELAKS 570
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVL 572
+A ++FGS D L +DM + D ++S L+G+ Y E++ VVL
Sbjct: 571 VAATMFGSEDNLIRLDMSEYMDQIASSK--LIGSAPGYVGYEEGGQLSEQVRRHPYSVVL 628
Query: 573 VEDIDLADPQ----FIKILADGFETENFGKVI 600
+++++ A P +++L +GF T++ G+ +
Sbjct: 629 LDEVEKAHPDVFNLLLQVLDEGFLTDSKGRKV 660
>gi|256384444|gb|ACU79014.1| ATPase family associated with various cellular activities (AAA)
protein [Mycoplasma mycoides subsp. capri str. GM12]
gi|256385277|gb|ACU79846.1| ATPase family associated with various cellular activities (AAA)
protein [Mycoplasma mycoides subsp. capri str. GM12]
gi|296456010|gb|ADH22245.1| ATPase family associated with various cellular activities (AAA)
protein [synthetic Mycoplasma mycoides JCVI-syn1.0]
Length = 713
Score = 47.4 bits (111), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 112/589 (19%), Positives = 228/589 (38%), Gaps = 87/589 (14%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P +E+I V ++ RK + N V++G+ A+V R+ +GDVP LK ++
Sbjct: 31 PVIGREEEISRVIQILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPTLLKNKRIL 90
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNF 186
+ + M + E + +K V+ + G I++ +L V ++ NN+
Sbjct: 91 ELDMGSLMAGAMYMGDYE---SRVKAVVNEIQKSNGEIILFIDELHLIVGAGKTGNNSGM 147
Query: 187 NGEIASCYNPINHLVSEVGKLVS-DCNSASSTRVWLMATASYQ-TYMKCQMRQPPLEIQW 244
+ +++ P G+L + + + R ++ A+ + + + + +P ++
Sbjct: 148 D--VSNLLKP----ALARGELKAIGSTTLNEYRQYIEKDAALERRFQRVLVSEPTID--- 198
Query: 245 ALQAVSIPSGGLGL--SLHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCAECT 302
Q +SI G + H +H++ L + S + T + + D CA
Sbjct: 199 --QTISILRGLKDRFETYHGVRIHDNALVSAAKLSSRYITDRYLPDKAIDLVDEACASIR 256
Query: 303 SNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQKDELVEMRRKWNRSCHSLHQGRHTQSQF 362
+ +K++ L+ +S+ +KD+ + + +W + L + Q+
Sbjct: 257 TELASVPIELDQVNRKVM--QLEIETSALEKEKDD--KSKERWQEAKKELDSLKIEQASL 312
Query: 363 SSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSISFA---ESAMKPHNSSNSVAKFR 419
+ + + S S+ + + + A + ++ P + S+A F
Sbjct: 313 NEKWEKEKEELSRINSVKSSIESLKQELETAQNDGNYKRAGEIQYSLLP-SLEKSLALFE 371
Query: 420 RQQSCSTI-----EFNFGNCTRKPQGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQ 474
+Q I E K G+ +D L S+E +++ L
Sbjct: 372 KQTGSKMISEEVTEHEIAKVVSKSTGI--LVDRLISSEKEKL----------------LN 413
Query: 475 RSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSI 529
DL L++ V Q +I ++ ++ +S K FL G +GK +A S+
Sbjct: 414 LEDL---LKKYVKGQDQAIKAVTSAIMRSRSGIKNPDKPIGSFLFLGPTGVGKTEVARSL 470
Query: 530 AESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL----------------VVL 572
A+ +F S + +DM ++ + HS L+G Y +VL
Sbjct: 471 ADILFNSPKKMIRLDM---SEYMEKHSVAKLIGAPPGYVGYEEGGRLTEAVRRNPYSIVL 527
Query: 573 VEDIDLADPQ----FIKILADGFETENFGK------VIFVLTKGDSSNY 611
++I+ A ++IL DG T++ GK I V+T +S Y
Sbjct: 528 FDEIEKAHTDVFNILLQILDDGRLTDSLGKTIDFKNTIIVMTSNIASQY 576
>gi|374583935|ref|ZP_09657027.1| ATPase AAA-2 domain protein [Leptonema illini DSM 21528]
gi|373872796|gb|EHQ04790.1| ATPase AAA-2 domain protein [Leptonema illini DSM 21528]
Length = 867
Score = 47.4 bits (111), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 46/198 (23%)
Query: 460 LALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLL 514
+ L E S+++KL R + + LQ+ V Q D++H + + ++ K + F+L
Sbjct: 490 IPLEKIEESEASKLLR--MEEELQKRVVGQSDALHLVSRAVRRSRTGFKDQRKPSGSFVL 547
Query: 515 QGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL---- 569
G +GK LA ++AE +FG+ D LF +DM ++ + HS L+G+ Y
Sbjct: 548 LGPTGVGKTELARTLAEFLFGTEDALFRLDM---SEYMEPHSVSKLIGSPPGYVGYDDAG 604
Query: 570 ------------VVLVEDIDLADPQ----FIKILADGFETENFGKVIFVLTKGDSSNYEE 613
VVL ++I+ A P ++IL +G T+ G+
Sbjct: 605 QLTEYVRRRPYSVVLFDEIEKAHPDIFNILLQILEEGTLTDTHGR--------------- 649
Query: 614 RIENQDSVINMTLKVNER 631
+++ +D++I MT + R
Sbjct: 650 KVDFRDTIIIMTSNLGAR 667
>gi|297823931|ref|XP_002879848.1| hypothetical protein ARALYDRAFT_483058 [Arabidopsis lyrata subsp.
lyrata]
gi|297325687|gb|EFH56107.1| hypothetical protein ARALYDRAFT_483058 [Arabidopsis lyrata subsp.
lyrata]
Length = 908
Score = 47.4 bits (111), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 114/281 (40%), Gaps = 63/281 (22%)
Query: 74 DIKLVFEVFLRKKRRNTVIVGDCL-------------SITDALVFDF-MGRVERGDVPQE 119
D + + VF+R+K RN ++VG + TD ++ + + D+ E
Sbjct: 219 DYRRISAVFMREKGRNPLLVGVSAYGVLTGYLNSLEKNRTDGMILPTKLHGLTAVDIGSE 278
Query: 120 LKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQE 179
+ ++KF RF +L +L + G G I+ GDL+ D +
Sbjct: 279 ISDQIIVKFDKTYTDTRFH-------DLGKLAEQ-----GSGPGLILNYGDLRVFTDGE- 325
Query: 180 SNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLM-ATASYQTYMKCQMRQP 238
G + + N++V+ V +L+ RVWL+ AT S Y K + P
Sbjct: 326 --------GNVPAA----NYIVNRVSELLR----RHGRRVWLIGATTSNDVYEKMLRKFP 369
Query: 239 PLEIQWALQAVSIPSGGLGLSLHSSSVHESRLT----FSQNPSQVWETKPFAIKEEEDHK 294
+E W LQ ++I S L H SS+ S + FS PS + PF+ +E
Sbjct: 370 NVEKDWDLQLLTITSLKPCLPHHKSSLIGSFVPFGGFFSTTPSDL--KLPFSGFNKE--- 424
Query: 295 LNCCAECTSNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQK 335
S+ ++ Q LPPWLQ + ++ NQK
Sbjct: 425 ---ITGPVSSISDQTQ-------STLPPWLQMTTRADLNQK 455
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 23/150 (15%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS--AKKATWFLLQGNDTIGKRRLALSIAESVFG 535
+Y+ L + V Q ++ I L + ++ W L G DT+GKRR++L +AE V+
Sbjct: 537 IYRRLTDRVSGQDEAARVISCALSQPPKIVTRRDVWLNLVGPDTVGKRRMSLVLAEIVYQ 596
Query: 536 STDLLFHIDMRKRNDGVSSHSEMLMGTLKN-----YEKL------VVLVEDIDLADPQFI 584
S +D+ G+ + + K +E + VV +E+I+ AD +
Sbjct: 597 SEHRYMAVDLGAAEHGMDGCDDAMRLRGKTMVDHIFEVMCRNPFCVVFLENIEKADEKLQ 656
Query: 585 KILADGFETENF----------GKVIFVLT 604
L+ ET F G +FV+T
Sbjct: 657 ISLSKAIETGKFMDSHGREVGIGNTMFVMT 686
>gi|433451381|ref|ZP_20412775.1| istB-like ATP binding family protein [Mycoplasma sp. G5847]
gi|431933716|gb|ELK20278.1| istB-like ATP binding family protein [Mycoplasma sp. G5847]
Length = 713
Score = 47.4 bits (111), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 112/589 (19%), Positives = 226/589 (38%), Gaps = 87/589 (14%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P +E+I V ++ RK + N V++G+ A+V R+ +GDVP LK ++
Sbjct: 31 PVIGREEEISRVIQILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPTLLKNKRIL 90
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNF 186
+ + M + E + +K V + G I++ +L V ++ NN+
Sbjct: 91 ELDMGSLMAGAMYMGDYE---SRVKAVVSEIQKSNGEIILFIDELHLIVGAGKTGNNSGM 147
Query: 187 NGEIASCYNPINHLVSEVGKLVS-DCNSASSTRVWLMATASYQ-TYMKCQMRQPPLEIQW 244
+ +++ P G+L + + + R ++ A+ + + + + +P ++
Sbjct: 148 D--VSNLLKP----ALARGELKAIGSTTLNEYRQYIEKDAALERRFQRVLVSEPTID--- 198
Query: 245 ALQAVSIPSGGLGL--SLHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCAECT 302
Q +SI G + H +H++ L + S + T + + D CA
Sbjct: 199 --QTISILRGLKDRFETYHGVRIHDNALVSAAKLSSRYITDRYLPDKAIDLVDEACASIR 256
Query: 303 SNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQKDELVEMRRKWNRSCHSLHQGRHTQSQF 362
+ +K++ L+ +S+ +KD+ + + +W + L + Q+
Sbjct: 257 TELASVPIELDQVNRKVM--QLEIETSALEKEKDD--KSKERWQEAKKELDSLKIEQANL 312
Query: 363 SSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSISFA---ESAMKPHNSSNSVAKFR 419
+ + K S S+ + + + A + ++ P N +A F
Sbjct: 313 NQKWEKEKEELSKINSLKSSIESLKQELETAQNDGNYKRAGEIQYSLLPSLEKN-LALFE 371
Query: 420 RQQSCSTI-----EFNFGNCTRKPQGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQ 474
+Q I E K G+ +D L S+E +++ L
Sbjct: 372 KQSGSKMISEEVTEHEIAKVVSKSTGI--LVDRLISSEKEKL----------------LN 413
Query: 475 RSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSI 529
DL L++ V Q +I ++ ++ +S K FL G +GK +A S+
Sbjct: 414 LEDL---LKKYVKGQDQAIKAVTSAIMRSRSGIKNPDKPIGSFLFLGPTGVGKTEVARSL 470
Query: 530 AESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL----------------VVL 572
A+ +F S + +DM ++ + HS L+G Y ++L
Sbjct: 471 ADILFNSPKKMIRLDM---SEYMEKHSVAKLIGAPPGYVGYEEGGRLTEAVRRNPYSIIL 527
Query: 573 VEDIDLADPQ----FIKILADGFETENFGK------VIFVLTKGDSSNY 611
++I+ A ++IL DG T++ GK I V+T +S Y
Sbjct: 528 FDEIEKAHSDVFNILLQILDDGRLTDSLGKTIDFKNTIIVMTSNIASQY 576
>gi|315039210|ref|YP_004032778.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
amylovorus GRL 1112]
gi|325957684|ref|YP_004293096.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
acidophilus 30SC]
gi|385818393|ref|YP_005854783.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
amylovorus GRL1118]
gi|312277343|gb|ADQ59983.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
amylovorus GRL 1112]
gi|325334249|gb|ADZ08157.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
acidophilus 30SC]
gi|327184331|gb|AEA32778.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
amylovorus GRL1118]
Length = 709
Score = 47.4 bits (111), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 26/160 (16%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK----SAKKATWFLLQGNDTI 520
SEL + DL K L++NV Q +I I + + + S + FLL G +
Sbjct: 381 SELHADEAQKNLDLAKKLKQNVIDQDRAIDVITDAIARKQIFKDSDRPTGSFLLTGPTGV 440
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL- 569
GK LA +A +FG+ D L +DM + D ++ + L+G+ Y EK+
Sbjct: 441 GKTELAKQLAIQLFGNKDHLIRLDMSEYQDEMAVNK--LIGSAPGYVGYGEGGQLTEKVR 498
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++L ++I+ A+PQ ++I+ DG T+ G+ +
Sbjct: 499 HQPYSLILFDEIEKANPQVFNALLQIMDDGRLTDAQGRTV 538
>gi|373463300|ref|ZP_09554927.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
kisonensis F0435]
gi|371764988|gb|EHO53353.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
kisonensis F0435]
Length = 830
Score = 47.4 bits (111), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L KVL + V Q ++I ++ + +S K F+ G +GK LA ++AE
Sbjct: 513 NLEKVLHKRVVGQEEAISAVSRSIRRARSGLKDPNRPIGSFMFLGPTGVGKTELAKAVAE 572
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
+VFGS D + +DM + + S+ L+G+ Y EK+ VVL ++
Sbjct: 573 AVFGSEDDMIRVDMSEFMEKYSTSR--LIGSAPGYVGYDEGGQLTEKVRQKPYSVVLFDE 630
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG+ T++ G+ I
Sbjct: 631 VEKAHPDVFNLLLQVLDDGYLTDSKGRKI 659
>gi|384048146|ref|YP_005496163.1| ATPase [Bacillus megaterium WSH-002]
gi|345445837|gb|AEN90854.1| ATPase AAA-2 domain protein [Bacillus megaterium WSH-002]
Length = 704
Score = 47.4 bits (111), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 80/169 (47%), Gaps = 25/169 (14%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW--- 511
E K + +G + ++SAK++ L + L + V Q +++ + + + ++ KA
Sbjct: 387 EKKTGIPVGKLQENESAKMKH--LAEHLAQKVIGQQEAVEKVAKAIRRSRAGLKAKHRPI 444
Query: 512 --FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE 557
FL G +GK L ++AE +FGS D + +DM + + G H E
Sbjct: 445 GSFLFVGPTGVGKTELTKTLAEELFGSKDAMVRLDMSEYMEKHAVSKLIGSPPGYVGHEE 504
Query: 558 --MLMGTLKNYEKLVVLVEDIDLADP----QFIKILADGFETENFGKVI 600
L ++ ++L+++I+ A P F++IL DG T++ G+ +
Sbjct: 505 AGQLTEKVRRNPYSIILLDEIEKAHPDVQHMFLQILEDGRLTDSQGRTV 553
>gi|385813095|ref|YP_005849488.1| ATP-dependent clp protease ATP-binding subunit clpA-like protein
[Lactobacillus helveticus H10]
gi|323465814|gb|ADX69501.1| ATP-dependent clp protease ATP-binding subunit clpA-like protein
[Lactobacillus helveticus H10]
Length = 822
Score = 47.4 bits (111), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 27/152 (17%)
Query: 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALS 528
Q ++L +L + V Q ++ ++ + +S K FL G +GK LA S
Sbjct: 510 QLANLESILHKRVIGQDKAVSAVARAIRRSRSGIKDERRPIGSFLFLGPTGVGKTELAKS 569
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVL 572
+A ++FGS D L +DM + D ++S L+G+ Y E++ VVL
Sbjct: 570 VAAAMFGSEDHLIRLDMSEYMDQIASSK--LIGSAPGYVGYEEGGQLSEQVRRHPYSVVL 627
Query: 573 VEDIDLADPQ----FIKILADGFETENFGKVI 600
+++++ A P +++L +GF T++ G+ +
Sbjct: 628 LDEVEKAHPDVFNLLLQVLDEGFLTDSKGRKV 659
>gi|161508175|ref|YP_001578146.1| ATP-dependent protease [Lactobacillus helveticus DPC 4571]
gi|160349164|gb|ABX27838.1| ATP-dependent protease [Lactobacillus helveticus DPC 4571]
Length = 707
Score = 47.4 bits (111), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 26/160 (16%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK----SAKKATWFLLQGNDTI 520
SEL + DL K L++NV Q +I I + + + S + FLL G +
Sbjct: 379 SELHADEAQKNLDLAKKLKKNVIDQDRAIDVITDAIARKQIFKDSDRPTGSFLLTGPTGV 438
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL- 569
GK LA +A +FG+ D L +DM + D ++ + L+G+ Y EK+
Sbjct: 439 GKTELAKQLAIQLFGNKDHLIRLDMSEYQDEMAVNK--LIGSAPGYVGYGEGGQLTEKVR 496
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++L ++I+ A+PQ ++I+ DG T+ G+ +
Sbjct: 497 HQPYSLILFDEIEKANPQVFNALLQIMDDGRLTDAQGRTV 536
>gi|294498032|ref|YP_003561732.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Bacillus
megaterium QM B1551]
gi|294347969|gb|ADE68298.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Bacillus
megaterium QM B1551]
Length = 704
Score = 47.4 bits (111), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 80/169 (47%), Gaps = 25/169 (14%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW--- 511
E K + +G + ++SAK++ L + L + V Q +++ + + + ++ KA
Sbjct: 387 EKKTGIPVGKLQENESAKMKH--LAEHLAQKVIGQQEAVEKVAKAIRRSRAGLKAKHRPI 444
Query: 512 --FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE 557
FL G +GK L ++AE +FGS D + +DM + + G H E
Sbjct: 445 GSFLFVGPTGVGKTELTKTLAEELFGSKDAMVRLDMSEYMEKHAVSKLIGSPPGYVGHEE 504
Query: 558 --MLMGTLKNYEKLVVLVEDIDLADP----QFIKILADGFETENFGKVI 600
L ++ ++L+++I+ A P F++IL DG T++ G+ +
Sbjct: 505 AGQLTEKVRRNPYSIILLDEIEKAHPDVQHMFLQILEDGRLTDSQGRTV 553
>gi|403515975|ref|YP_006656795.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
helveticus R0052]
gi|403081413|gb|AFR22991.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
helveticus R0052]
Length = 707
Score = 47.0 bits (110), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 26/160 (16%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK----SAKKATWFLLQGNDTI 520
SEL + DL K L++NV Q +I I + + + S + FLL G +
Sbjct: 379 SELHADEAQKNLDLAKKLKKNVIDQDRAIDVITDAIARKQIFKDSDRPTGSFLLTGPTGV 438
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL- 569
GK LA +A +FG+ D L +DM + D ++ + L+G+ Y EK+
Sbjct: 439 GKTELAKQLAIQLFGNKDHLIRLDMSEYQDEMAVNK--LIGSAPGYVGYGEGGQLTEKVR 496
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++L ++I+ A+PQ ++I+ DG T+ G+ +
Sbjct: 497 HQPYSLILFDEIEKANPQVFNALLQIMDDGRLTDAQGRTV 536
>gi|379704228|ref|YP_005220602.1| type VI secretion ATPase, ClpV1 family [Rahnella aquatilis CIP
78.65 = ATCC 33071]
gi|371590865|gb|AEX54594.1| type VI secretion ATPase, ClpV1 family [Rahnella aquatilis CIP
78.65 = ATCC 33071]
Length = 856
Score = 47.0 bits (110), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 11/153 (7%)
Query: 13 NHIEDSSA-SSVFQCYTSSGGGVFSSPCSPSSSEAH-HFINPNT------FWQN---HAL 61
N I SSA C T + C+P+ + H NT F +N A
Sbjct: 127 NQIHLSSALQQALLCQTDRADRLLHDACAPAQATNHPAATRHNTDSAVMKFTRNLTEQAR 186
Query: 62 FSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELK 121
+S PA +++I+ + +V LR+++ N V+ G+ ALV R+ G VPQ LK
Sbjct: 187 NASLDPALGREQEIRQLIDVLLRRRQNNPVLTGEPGVGKTALVEGLAQRIADGTVPQALK 246
Query: 122 QTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKV 154
++ + K E E L L R+V
Sbjct: 247 TMEILSLDMGLLQAGASVKGEFENRLQTLLREV 279
>gi|406872152|gb|EKD22788.1| hypothetical protein ACD_83C00268G0001, partial [uncultured
bacterium]
Length = 690
Score = 47.0 bits (110), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 103/247 (41%), Gaps = 31/247 (12%)
Query: 380 ASTYPWWPSQSSIFLDSNSI-SFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKP 438
AS P + QS + L N I +E + + SN ++ + +
Sbjct: 301 ASAQPIYEGQSEVELIKNDIFEVSEQKLNAIDQSNYTVARELKEVEDKLHDKLMKAEKNR 360
Query: 439 QGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQRSDL---YKVLQENVPWQFDSIHS 495
+ P++ ++ +N +E+ + LS KL S + Y + ++ + Q ++ +
Sbjct: 361 STINPQI-TITTNHLREIVKSQTGSPVILSSPQKLHTSPIANPYHIFKKYIKGQDKALKT 419
Query: 496 IVEVLVECKSA----KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG 551
I E L + K +L G +GK A IA +FGS D L DM + ++
Sbjct: 420 ISEHLKAINFSSVDRKPGMSIILVGPTGVGKTETARIIARDIFGSADRLVKFDMSEYSER 479
Query: 552 VSSHSEMLMGTLKNYE------KL----------VVLVEDIDLADPQ----FIKILADGF 591
S +S L+G+ Y KL V+L ++I+ A P ++IL DGF
Sbjct: 480 FSINS--LIGSPAGYVGYEDGGKLTNAVRKKPFSVILFDEIEKAHPDIFNLLLQILEDGF 537
Query: 592 ETENFGK 598
T+N G+
Sbjct: 538 LTDNIGR 544
>gi|420264399|ref|ZP_14767030.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Enterococcus
sp. C1]
gi|394768372|gb|EJF48300.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Enterococcus
sp. C1]
Length = 826
Score = 47.0 bits (110), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
DL K+L + V Q +++ ++ + +S K F+ G +GK LA ++AE
Sbjct: 511 DLEKILHQRVVGQEEAVKAVARSIRRARSGLKDPNRPIGSFMFLGPTGVGKTELAKALAE 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 571 AMFGSEDALVRVDMSEFMEKYSTSR--LIGSPPGYVGYDEGGQLTEKIRSKPYSVILLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 629 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 657
>gi|147783009|emb|CAN72301.1| hypothetical protein VITISV_024923 [Vitis vinifera]
Length = 1166
Score = 47.0 bits (110), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 31/133 (23%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECK---------SAKKATWFLLQGNDTIGKRRLALS 528
L++ L E + WQ ++I I E + C+ S K WF G D K+++A++
Sbjct: 763 LFRALTERIDWQHEAISVISETIAHCRLGNEKRHGASPKGDIWFNFVGPDRFSKKKIAVA 822
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHS---------------------EMLMGTLKNYE 567
+AE ++G + +D+ + DG+ S + + G L
Sbjct: 823 LAEILYGRRESFICVDLSSQ-DGMIHKSANHGSQEMNGYNVKFRGKNVVDYIAGELSKKP 881
Query: 568 KLVVLVEDIDLAD 580
VV +E++D AD
Sbjct: 882 LSVVFLENVDQAD 894
Score = 43.5 bits (101), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 27/187 (14%)
Query: 73 EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGD---VPQELKQTHVIKFH 129
E+ K + EV R K RN ++VG C DAL F VE+G +P E+ +I
Sbjct: 214 ENCKRIGEVLGRGKGRNPLLVGVC--AYDALQ-SFTEMVEKGRYNILPVEISGLSIICIE 270
Query: 130 FAPVTLRFMKKEEVEMNLTELKRKVDSLTS--VGGGAIIYTGDLKWTVDQQESNNNNNFN 187
LRF + + + +V L +G G ++ GDLK +D+ +++
Sbjct: 271 --KDVLRFFNENCDQGLINSRFEEVGVLVQHCLGAGLVVNFGDLKVFIDRDDASVGVV-- 326
Query: 188 GEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLM-ATASYQTYMKCQMRQPPLEIQWAL 246
+++VS++ +L+ +V LM A +SY+TY+K R P +E W L
Sbjct: 327 ----------SYVVSQLTRLLE----IHGGKVRLMGAVSSYETYLKFLNRYPSIEKDWDL 372
Query: 247 QAVSIPS 253
Q + I S
Sbjct: 373 QLLPITS 379
>gi|325567772|ref|ZP_08144383.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Enterococcus
casseliflavus ATCC 12755]
gi|325158545|gb|EGC70692.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Enterococcus
casseliflavus ATCC 12755]
Length = 829
Score = 47.0 bits (110), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
DL K+L + V Q +++ ++ + +S K F+ G +GK LA ++AE
Sbjct: 514 DLEKILHQRVVGQEEAVKAVARSIRRARSGLKDPNRPIGSFMFLGPTGVGKTELAKALAE 573
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 574 AMFGSEDALVRVDMSEFMEKYSTSR--LIGSPPGYVGYDEGGQLTEKIRSKPYSVILLDE 631
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 632 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 660
>gi|257868131|ref|ZP_05647784.1| ATP-dependent Clp protease [Enterococcus casseliflavus EC30]
gi|257874594|ref|ZP_05654247.1| ATP-dependent Clp protease [Enterococcus casseliflavus EC10]
gi|257877740|ref|ZP_05657393.1| ATP-dependent Clp protease [Enterococcus casseliflavus EC20]
gi|257802245|gb|EEV31117.1| ATP-dependent Clp protease [Enterococcus casseliflavus EC30]
gi|257808758|gb|EEV37580.1| ATP-dependent Clp protease [Enterococcus casseliflavus EC10]
gi|257811906|gb|EEV40726.1| ATP-dependent Clp protease [Enterococcus casseliflavus EC20]
Length = 829
Score = 47.0 bits (110), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
DL K+L + V Q +++ ++ + +S K F+ G +GK LA ++AE
Sbjct: 514 DLEKILHQRVVGQEEAVKAVARSIRRARSGLKDPNRPIGSFMFLGPTGVGKTELAKALAE 573
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 574 AMFGSEDALVRVDMSEFMEKYSTSR--LIGSPPGYVGYDEGGQLTEKIRSKPYSVILLDE 631
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 632 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 660
>gi|417011835|ref|ZP_11946326.1| ATP-dependent protease [Lactobacillus helveticus MTCC 5463]
gi|328464084|gb|EGF35567.1| ATP-dependent protease [Lactobacillus helveticus MTCC 5463]
Length = 707
Score = 47.0 bits (110), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 26/160 (16%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK----SAKKATWFLLQGNDTI 520
SEL + DL K L++NV Q +I I + + + S + FLL G +
Sbjct: 379 SELHADEAQKNLDLAKKLKKNVIDQDRAIDIITDAIARKQIFKDSDRPTGSFLLTGPTGV 438
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL- 569
GK LA +A +FG+ D L +DM + D ++ + L+G+ Y EK+
Sbjct: 439 GKTELAKQLAIQLFGNKDHLIRLDMSEYQDEMAVNK--LIGSAPGYVGYGEGGQLTEKVR 496
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++L ++I+ A+PQ ++I+ DG T+ G+ +
Sbjct: 497 HQPYSLILFDEIEKANPQVFNALLQIMDDGRLTDAQGRTV 536
>gi|385814724|ref|YP_005851117.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
helveticus H10]
gi|323467443|gb|ADX71130.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
helveticus H10]
Length = 714
Score = 47.0 bits (110), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 26/160 (16%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK----SAKKATWFLLQGNDTI 520
SEL + DL K L++NV Q +I I + + + S + FLL G +
Sbjct: 386 SELHADEAQKNLDLAKKLKKNVIDQDRAIDIITDAIARKQIFKDSDRPTGSFLLTGPTGV 445
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL- 569
GK LA +A +FG+ D L +DM + D ++ + L+G+ Y EK+
Sbjct: 446 GKTELAKQLAIQLFGNKDHLIRLDMSEYQDEMAVNK--LIGSAPGYVGYGEGGQLTEKVR 503
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++L ++I+ A+PQ ++I+ DG T+ G+ +
Sbjct: 504 HQPYSLILFDEIEKANPQVFNALLQIMDDGRLTDAQGRTV 543
>gi|238855059|ref|ZP_04645387.1| negative regulator of genetic competence ClpC/mecB [Lactobacillus
jensenii 269-3]
gi|260664844|ref|ZP_05865695.1| ATP-dependent chaperone ClpB [Lactobacillus jensenii SJ-7A-US]
gi|238832303|gb|EEQ24612.1| negative regulator of genetic competence ClpC/mecB [Lactobacillus
jensenii 269-3]
gi|260561327|gb|EEX27300.1| ATP-dependent chaperone ClpB [Lactobacillus jensenii SJ-7A-US]
Length = 827
Score = 47.0 bits (110), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAE 531
+L L + V Q +I ++ + + +S K FL G +GK LA ++A
Sbjct: 514 NLEATLHKRVIGQNKAIQAVAKAIKRSRSGIKDEGRPIGSFLFLGPTGVGKTELAKAVAS 573
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
+VFGS + L IDM + D ++S L+G+ Y E++ VVL+++
Sbjct: 574 AVFGSENNLVRIDMSEYMDTIASSK--LIGSAPGYVGYEEGGQLSEQVRRHPYSVVLLDE 631
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DGF T++ G+ +
Sbjct: 632 VEKAHPDVFNLLLQVLDDGFLTDSKGRKV 660
>gi|352516241|ref|YP_004885558.1| ATP-dependent Clp protease ATP-binding subunit ClpC
[Tetragenococcus halophilus NBRC 12172]
gi|348600348|dbj|BAK93394.1| ATP-dependent Clp protease ATP-binding subunit ClpC
[Tetragenococcus halophilus NBRC 12172]
Length = 830
Score = 47.0 bits (110), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
DL K L E V Q ++++++ + +S K F+ G +GK LA ++AE
Sbjct: 514 DLEKDLHERVVGQDEAVNAVARSIRRARSGLKDPNRPIGSFMFLGPTGVGKTELAKTLAE 573
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
S+FG D L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 574 SMFGEEDALIRLDMSEYMEKYSTSR--LIGSPPGYVGYDEGGQLTEKVRSKPYSVILLDE 631
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P+ +++L DG T++ G+ +
Sbjct: 632 VEKAHPEVFNTLLQVLDDGQLTDSKGRSV 660
>gi|112148355|gb|ABI13538.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
helveticus CNRZ32]
Length = 713
Score = 47.0 bits (110), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 26/160 (16%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK----SAKKATWFLLQGNDTI 520
SEL + DL K L++NV Q +I I + + + S + FLL G +
Sbjct: 385 SELHADEAQKNLDLAKKLKKNVIDQDRAIDIITDAIARKQIFKDSDRPTGSFLLTGPTGV 444
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL- 569
GK LA +A +FG+ D L +DM + D ++ + L+G+ Y EK+
Sbjct: 445 GKTELAKQLAIQLFGNKDHLIRLDMSEYQDEMAVNK--LIGSAPGYVGYGEGGQLTEKVR 502
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++L ++I+ A+PQ ++I+ DG T+ G+ +
Sbjct: 503 HQPYSLILFDEIEKANPQVFNALLQIMDDGRLTDAQGRTV 542
>gi|146320224|ref|YP_001199935.1| ATPases with chaperone activity, ATP-binding protein [Streptococcus
suis 98HAH33]
gi|145691030|gb|ABP91535.1| ATPases with chaperone activity, ATP-binding subunit [Streptococcus
suis 98HAH33]
Length = 632
Score = 47.0 bits (110), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 38/186 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ +L L NV Q D++ ++ + ++ + FL G +GK
Sbjct: 399 SDIERLK--ELKNRLAANVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGK 456
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 457 TELAKQLALDLFGNKDAIIRLDMSEYSD--RTAVSKLIGTTAGYIGYDDNSHTLTERVRR 514
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNY--EE 613
+VL+++I+ ADPQ I ++L DG T+ NF I + T Y E
Sbjct: 515 NPYSIVLMDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTIIIATSNAGFGYGMAE 574
Query: 614 RIENQD 619
ENQD
Sbjct: 575 GEENQD 580
>gi|58336622|ref|YP_193207.1| ATPase [Lactobacillus acidophilus NCFM]
gi|227903179|ref|ZP_04020984.1| ATPase [Lactobacillus acidophilus ATCC 4796]
gi|58253939|gb|AAV42176.1| ATPase [Lactobacillus acidophilus NCFM]
gi|227868984|gb|EEJ76405.1| ATPase [Lactobacillus acidophilus ATCC 4796]
Length = 825
Score = 46.6 bits (109), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 27/152 (17%)
Query: 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALS 528
Q ++L +L + V Q ++ ++ + +S K FL G +GK LA S
Sbjct: 508 QLANLEGILHKRVIGQDKAVSAVARAIRRSRSGIKDERRPIGSFLFLGPTGVGKTELAKS 567
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVL 572
+A ++FGS D L +DM + D ++S L+G+ Y E++ VVL
Sbjct: 568 VAAAMFGSEDNLIRLDMSEYMDQIASSK--LIGSAPGYVGYEEGGQLSEQVRRHPYSVVL 625
Query: 573 VEDIDLADPQ----FIKILADGFETENFGKVI 600
+++++ A P +++L +GF T++ G+ +
Sbjct: 626 LDEVEKAHPDVFNLLLQVLDEGFMTDSKGRKV 657
>gi|403514305|ref|YP_006655125.1| ATP-dependent protease ATP-binding subunit ClpC [Lactobacillus
helveticus R0052]
gi|403079743|gb|AFR21321.1| ATP-dependent protease ATP-binding subunit ClpC [Lactobacillus
helveticus R0052]
Length = 826
Score = 46.6 bits (109), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 27/152 (17%)
Query: 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALS 528
Q ++L +L + V Q ++ ++ + +S K FL G +GK LA S
Sbjct: 510 QLANLESILHKRVIGQDKAVSAVARAIRRSRSGIKDERRPIGSFLFLGPTGVGKTELAKS 569
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVL 572
+A ++FGS D L +DM + D ++S L+G+ Y E++ VVL
Sbjct: 570 VAAAMFGSEDNLIRLDMSEYMDQIASSK--LIGSAPGYVGYEEGGQLSEQVRRHPYSVVL 627
Query: 573 VEDIDLADPQ----FIKILADGFETENFGKVI 600
+++++ A P +++L +GF T++ G+ +
Sbjct: 628 LDEVEKAHPDVFNLLLQVLDEGFLTDSKGRKV 659
>gi|293335257|ref|NP_001170618.1| uncharacterized protein LOC100384662 [Zea mays]
gi|238006394|gb|ACR34232.1| unknown [Zea mays]
Length = 440
Score = 46.6 bits (109), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 13/71 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS-------------AKKATWFLLQGNDTIGKRR 524
L L++ VPWQ + + + +++C+S AK+ TW L G D GK R
Sbjct: 178 LCGALEKEVPWQKEIVPEVASAVLQCRSGIAKRRDKSRSADAKEETWMLFLGGDADGKER 237
Query: 525 LALSIAESVFG 535
+A +A VFG
Sbjct: 238 VARELARLVFG 248
>gi|323339619|ref|ZP_08079892.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactobacillus
ruminis ATCC 25644]
gi|417974548|ref|ZP_12615358.1| negative regulator of genetic competence [Lactobacillus ruminis
ATCC 25644]
gi|323092944|gb|EFZ35543.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactobacillus
ruminis ATCC 25644]
gi|346329069|gb|EGX97378.1| negative regulator of genetic competence [Lactobacillus ruminis
ATCC 25644]
Length = 834
Score = 46.6 bits (109), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 33/159 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
+L K+L + V Q ++I ++ + + +S + F+ G GK LA ++AE
Sbjct: 511 NLEKILHKRVVGQDEAIKAVSKAIRRARSGLSDPTRPIGSFMFLGPTGAGKTELAKALAE 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 571 AMFGSEDAMIRIDMSEYMEKYSTSR--LIGAPPGYVGYDEGGQLTEKVRNKPYSVVLLDE 628
Query: 576 IDLADPQ----FIKILADGFETE------NFGKVIFVLT 604
++ A P +++L DG+ T+ NF I ++T
Sbjct: 629 VEKAHPDVFNILLQVLDDGYLTDSKGRKVNFRNTIIIMT 667
>gi|427392279|ref|ZP_18886284.1| hypothetical protein HMPREF9698_00090 [Alloiococcus otitis ATCC
51267]
gi|425731546|gb|EKU94362.1| hypothetical protein HMPREF9698_00090 [Alloiococcus otitis ATCC
51267]
Length = 743
Score = 46.6 bits (109), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 88/190 (46%), Gaps = 37/190 (19%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVEC-----KSAKKA 509
E+K + +G EL + + Q +L + L+E V Q ++ + + + K +
Sbjct: 411 EIKTGIPVG--ELKEKEQTQLKNLEQALEEQVIGQDKAVEKVSKAIRRNRIGLRKKNRPI 468
Query: 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY-- 566
FL G +GK LA S+A+ +FGS + + +DM ++ + HS L+G+ Y
Sbjct: 469 GSFLFLGPTGVGKTELAKSLAKELFGSKEAMIRLDM---SEYMEKHSTSRLIGSPPGYVG 525
Query: 567 --------EKL------VVLVEDIDLADP----QFIKILADGFETE------NFGKVIFV 602
E++ ++LV++++ A P F++IL DG T+ NF + I +
Sbjct: 526 YDEAGQLTEQVRRKPYSLILVDEVEKAHPDVLNMFLQILDDGHLTDSQGRRVNFKETIII 585
Query: 603 LTKGDSSNYE 612
+T S E
Sbjct: 586 MTSNAGSTDE 595
>gi|260101947|ref|ZP_05752184.1| ATP-dependent Clp protease [Lactobacillus helveticus DSM 20075]
gi|260084259|gb|EEW68379.1| ATP-dependent Clp protease [Lactobacillus helveticus DSM 20075]
Length = 718
Score = 46.6 bits (109), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 26/160 (16%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK----SAKKATWFLLQGNDTI 520
SEL + DL K L++NV Q +I I + + + S + FLL G +
Sbjct: 390 SELHADEAQKNLDLAKKLKKNVIDQDRAIDIITDAIARKQIFKDSDRPTGSFLLTGPTGV 449
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL- 569
GK LA +A +FG+ D L +DM + D ++ + L+G+ Y EK+
Sbjct: 450 GKTELAKQLAIQLFGNKDHLIRLDMSEYQDEMAVNK--LIGSAPGYVGYGEGGQLTEKVR 507
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++L ++I+ A+PQ ++I+ DG T+ G+ +
Sbjct: 508 HQPYSLILFDEIEKANPQVFNALLQIMDDGRLTDAQGRTV 547
>gi|227894512|ref|ZP_04012317.1| ATPase [Lactobacillus ultunensis DSM 16047]
gi|227863671|gb|EEJ71092.1| ATPase [Lactobacillus ultunensis DSM 16047]
Length = 828
Score = 46.6 bits (109), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 27/152 (17%)
Query: 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALS 528
Q ++L +L + V Q ++ ++ + +S K FL G +GK LA S
Sbjct: 511 QLANLESILHKRVIGQDKAVSAVARAIRRSRSGIKDERRPIGSFLFLGPTGVGKTELAKS 570
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVL 572
+A ++FGS D L +DM + D ++S L+G+ Y E++ VVL
Sbjct: 571 VAAAMFGSEDNLIRLDMSEYMDQIASSK--LIGSAPGYVGYEEGGQLSEQVRRHPYSVVL 628
Query: 573 VEDIDLADPQ----FIKILADGFETENFGKVI 600
+++++ A P +++L +GF T++ G+ +
Sbjct: 629 LDEVEKAHPDVFNLLLQVLDEGFLTDSKGRKV 660
>gi|226533379|ref|NP_001141435.1| uncharacterized protein LOC100273545 [Zea mays]
gi|194704568|gb|ACF86368.1| unknown [Zea mays]
Length = 474
Score = 46.6 bits (109), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 21/80 (26%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS---------------------AKKATWFLLQG 516
L L++ VPWQ + + I +++C+S AK+ TW L G
Sbjct: 198 LCSALEKEVPWQAEIVPEIASTVLQCRSGMARRREAAVSSSRPSSTQACAKEDTWMLFHG 257
Query: 517 NDTIGKRRLALSIAESVFGS 536
D GK R+A +A VFGS
Sbjct: 258 GDAEGKARVARELARLVFGS 277
>gi|295703385|ref|YP_003596460.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Bacillus
megaterium DSM 319]
gi|294801044|gb|ADF38110.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Bacillus
megaterium DSM 319]
Length = 704
Score = 46.6 bits (109), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 80/169 (47%), Gaps = 25/169 (14%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW--- 511
E K + +G + ++SAK++ L + L + V Q +++ + + + ++ KA
Sbjct: 387 EKKTGIPVGKLQENESAKMKH--LAEHLAQKVIGQQEAVEKVAKAIRRSRAGLKAKHRPI 444
Query: 512 --FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE 557
FL G +GK L ++AE +FGS D + +DM + + G H E
Sbjct: 445 GSFLFVGPTGVGKTELTKTLAEELFGSKDAMVRLDMSEYMEKHAVSKLIGSPPGYVGHEE 504
Query: 558 --MLMGTLKNYEKLVVLVEDIDLADP----QFIKILADGFETENFGKVI 600
L ++ ++L+++I+ A P F++IL DG T++ G+ +
Sbjct: 505 AGQLTEKVRRNPYSIILLDEIEKAHPDVQHMFLQILEDGRLTDSQGRTV 553
>gi|139473947|ref|YP_001128663.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
pyogenes str. Manfredo]
gi|306827515|ref|ZP_07460798.1| ATP-dependent Clp protease [Streptococcus pyogenes ATCC 10782]
gi|134272194|emb|CAM30440.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus pyogenes str. Manfredo]
gi|304430313|gb|EFM33339.1| ATP-dependent Clp protease [Streptococcus pyogenes ATCC 10782]
Length = 699
Score = 46.6 bits (109), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + ND + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDLFGSKDAIIRLDMSEYNDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 506 NNNTLTERVRRNPYAIVLLDEIEKADPQIITLLLQVLDDGRLTDGQGNTI 555
>gi|227522983|ref|ZP_03953032.1| ATP-binding Clp protease subunit [Lactobacillus hilgardii ATCC
8290]
gi|227089801|gb|EEI25113.1| ATP-binding Clp protease subunit [Lactobacillus hilgardii ATCC
8290]
Length = 831
Score = 46.6 bits (109), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L VL + V Q ++I ++ + +S K F+ G +GK LA ++AE
Sbjct: 514 NLEAVLHQRVVGQEEAISAVSRSIRRARSGLKDPNRPIGSFMFLGPTGVGKTELAKAVAE 573
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
+VFGS D + +DM + + S+ L+G+ Y EK+ VVL ++
Sbjct: 574 AVFGSEDDMIRVDMSEYMEKYSTSR--LIGSAPGYVGYDEGGQLTEKVRQKPYSVVLFDE 631
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG+ T++ G+ I
Sbjct: 632 VEKAHPDVFNLLLQVLDDGYLTDSKGRKI 660
>gi|19745956|ref|NP_607092.1| ATP-dependent Clp proteinase (ATP-binding subunit) [Streptococcus
pyogenes MGAS8232]
gi|19748115|gb|AAL97591.1| putative ATP-dependent Clp proteinase (ATP-binding subunit)
[Streptococcus pyogenes MGAS8232]
Length = 699
Score = 46.6 bits (109), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + ND + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDLFGSKDAIIRLDMSEYNDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 506 NNNTLTERVRRNPYAIVLLDEIEKADPQIITLLLQVLDDGRLTDGQGNTI 555
>gi|56808896|ref|ZP_00366605.1| COG0542: ATPases with chaperone activity, ATP-binding subunit
[Streptococcus pyogenes M49 591]
Length = 699
Score = 46.6 bits (109), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + ND + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDLFGSKDAIIRLDMSEYNDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 506 NNNTLTERVRRNPYAIVLLDEIEKADPQIITLLLQVLDDGRLTDGQGNTI 555
>gi|312868898|ref|ZP_07729083.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
oris PB013-T2-3]
gi|417886746|ref|ZP_12530890.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
oris F0423]
gi|311095572|gb|EFQ53831.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
oris PB013-T2-3]
gi|341593137|gb|EGS35994.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
oris F0423]
Length = 827
Score = 46.6 bits (109), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L KVL + V Q +++ ++ + + +S K F+ G +GK LA ++AE
Sbjct: 510 NLEKVLHKRVIGQNEAVDAVAKAIRRARSGLKNPNRPIGSFMFLGPTGVGKTELAKALAE 569
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 570 AMFGSEDNMIRIDMSEYMEKFSTSR--LIGAAPGYVGYDEGGQLTEKVRQHPYSVVLLDE 627
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
+ A P +++L DG+ T++ G+ +
Sbjct: 628 AEKAHPDVFNLLLQVLDDGYLTDSKGRRV 656
>gi|15674913|ref|NP_269087.1| ATP-dependent Clp proteinase ATP-binding subunit [Streptococcus
pyogenes SF370]
gi|21910143|ref|NP_664411.1| ATP-dependent Clp proteinase (ATP-binding subunit) [Streptococcus
pyogenes MGAS315]
gi|28896158|ref|NP_802508.1| ATP-dependent Clp proteinase (ATP-binding subunit) [Streptococcus
pyogenes SSI-1]
gi|71910507|ref|YP_282057.1| ATP-dependent protease ATP-binding subunit [Streptococcus pyogenes
MGAS5005]
gi|410680371|ref|YP_006932773.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
pyogenes A20]
gi|13622054|gb|AAK33808.1| putative ATP-dependent Clp proteinase (ATP-binding subunit)
[Streptococcus pyogenes M1 GAS]
gi|21904336|gb|AAM79214.1| putative ATP-dependent Clp proteinase (ATP-binding subunit)
[Streptococcus pyogenes MGAS315]
gi|28811408|dbj|BAC64341.1| putative ATP-dependent Clp proteinase (ATP-binding subunit)
[Streptococcus pyogenes SSI-1]
gi|71853289|gb|AAZ51312.1| ATP-dependent protease ATP-binding subunit [Streptococcus pyogenes
MGAS5005]
gi|395453749|dbj|BAM30088.1| ATP-dependent protease ATP-binding subunit [Streptococcus pyogenes
M1 476]
gi|409692960|gb|AFV37820.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pyogenes A20]
Length = 699
Score = 46.6 bits (109), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + ND + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDLFGSKDAIIRLDMSEYNDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 506 NNNTLTERVRRNPYAIVLLDEIEKADPQIITLLLQVLDDGRLTDGQGNTI 555
>gi|50914057|ref|YP_060029.1| ATP-dependent protease ATP-binding subunit [Streptococcus pyogenes
MGAS10394]
gi|81372153|sp|Q5XCL7.1|CLPC_STRP6 RecName: Full=Probable ATP-dependent Clp protease ATP-binding
subunit
gi|50903131|gb|AAT86846.1| ATP-dependent protease ATP-binding subunit [Streptococcus pyogenes
MGAS10394]
Length = 699
Score = 46.6 bits (109), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + ND + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDLFGSKDAIIRLDMSEYNDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 506 NNNTLTERVRRNPYAIVLLDEIEKADPQIITLLLQVLDDGRLTDGQGNTI 555
>gi|383479872|ref|YP_005388766.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
pyogenes MGAS15252]
gi|383493787|ref|YP_005411463.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
pyogenes MGAS1882]
gi|378927862|gb|AFC66068.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
pyogenes MGAS15252]
gi|378929515|gb|AFC67932.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
pyogenes MGAS1882]
Length = 699
Score = 46.6 bits (109), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + ND + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDLFGSKDAIIRLDMSEYNDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 506 NNNTLTERVRRNPYAIVLLDEIEKADPQIITLLLQVLDDGRLTDGQGNTI 555
>gi|209559241|ref|YP_002285713.1| ATP-dependent Clp proteinase [Streptococcus pyogenes NZ131]
gi|209540442|gb|ACI61018.1| Putative ATP-dependent Clp proteinase [Streptococcus pyogenes
NZ131]
Length = 699
Score = 46.6 bits (109), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + ND + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDLFGSKDAIIRLDMSEYNDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 506 NNNTLTERVRRNPYAIVLLDEIEKADPQIITLLLQVLDDGRLTDGQGNTI 555
>gi|94543769|gb|ABF33817.1| ATP-dependent endopeptidase clp ATP-binding subunit clpL
[Streptococcus pyogenes MGAS10270]
Length = 699
Score = 46.6 bits (109), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + ND + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDLFGSKDAIIRLDMSEYNDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 506 NNNTLTERVRRNPYAIVLLDEIEKADPQIITLLLQVLDDGRLTDGQGNTI 555
>gi|386362547|ref|YP_006071878.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pyogenes Alab49]
gi|350276956|gb|AEQ24324.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pyogenes Alab49]
Length = 699
Score = 46.6 bits (109), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + ND + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDLFGSKDAIIRLDMSEYNDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 506 NNNTLTERVRRNPYAIVLLDEIEKADPQIITLLLQVLDDGRLTDGQGNTI 555
>gi|365905486|ref|ZP_09443245.1| Clp protease/DnaK/DnaJ chaperone ATP-binding subunit [Lactobacillus
versmoldensis KCTC 3814]
Length = 835
Score = 46.6 bits (109), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L K L + V Q D+I ++ + +S K F+ G +GK LA SIAE
Sbjct: 510 NLEKELHKRVIGQNDAISAVSRAIRRARSGMKDPDRPIGSFMFLGPTGVGKTELAKSIAE 569
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
+FGS D L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 570 VMFGSEDNLIRVDMSEYMEQYSTSK--LIGSAPGYVGFDEGGQLTEKVRNEPYSVILLDE 627
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 628 VEKAHPDVFNILLQVLDDGILTDAKGRKV 656
>gi|227509922|ref|ZP_03939971.1| ATP-binding Clp protease subunit [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227190528|gb|EEI70595.1| ATP-binding Clp protease subunit [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 831
Score = 46.6 bits (109), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L VL + V Q ++I ++ + +S K F+ G +GK LA ++AE
Sbjct: 514 NLEAVLHQRVVGQEEAISAVSRSIRRARSGLKDPNRPIGSFMFLGPTGVGKTELAKAVAE 573
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
+VFGS D + +DM + + S+ L+G+ Y EK+ VVL ++
Sbjct: 574 AVFGSEDDMIRVDMSEYMEKYSTSR--LIGSAPGYVGYDEGGQLTEKVRQKPYSVVLFDE 631
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG+ T++ G+ I
Sbjct: 632 VEKAHPDVFNLLLQVLDDGYLTDSKGRKI 660
>gi|227512856|ref|ZP_03942905.1| ATPase/chaperone ClpC [Lactobacillus buchneri ATCC 11577]
gi|227083856|gb|EEI19168.1| ATPase/chaperone ClpC [Lactobacillus buchneri ATCC 11577]
Length = 831
Score = 46.6 bits (109), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L VL + V Q ++I ++ + +S K F+ G +GK LA ++AE
Sbjct: 514 NLEAVLHQRVVGQEEAISAVSRSIRRARSGLKDPNRPIGSFMFLGPTGVGKTELAKAVAE 573
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
+VFGS D + +DM + + S+ L+G+ Y EK+ VVL ++
Sbjct: 574 AVFGSEDDMIRVDMSEYMEKYSTSR--LIGSAPGYVGYDEGGQLTEKVRQKPYSVVLFDE 631
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG+ T++ G+ I
Sbjct: 632 VEKAHPDVFNLLLQVLDDGYLTDSKGRKI 660
>gi|269926455|ref|YP_003323078.1| ATPase AAA-2 domain protein [Thermobaculum terrenum ATCC BAA-798]
gi|269790115|gb|ACZ42256.1| ATPase AAA-2 domain protein [Thermobaculum terrenum ATCC BAA-798]
Length = 820
Score = 46.6 bits (109), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 39/181 (21%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAESVFGS 536
L + + Q ++I ++ + ++ K F+ G +GK LA ++AE +FGS
Sbjct: 509 LHKRIVGQDEAITTVARAVRRARTGMKDPRRPVGSFIFLGPTGVGKTELAKTLAEFMFGS 568
Query: 537 TDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL----------------VVLVEDIDLA 579
D L IDM ++ + H+ L+G Y V+L+++I+ A
Sbjct: 569 EDALIKIDM---SEFMERHAVARLVGAPPGYVGYEEGGQLTEAVRRKSFSVILLDEIEKA 625
Query: 580 DPQ----FIKILADGFETE------NFGKVIFVLTKGDSSNYEERIENQDSVINMTLKVN 629
P+ ++IL DG T+ NF I ++T SN + N+D+ + T++ +
Sbjct: 626 HPEAFNMLLQILEDGHLTDAKGRRVNFRNTIIIMT----SNIGAEMINRDTTVGFTIRTD 681
Query: 630 E 630
E
Sbjct: 682 E 682
>gi|94988381|ref|YP_596482.1| ATP-dependent endopeptidase Clp ATP-binding subunit [Streptococcus
pyogenes MGAS9429]
gi|94992263|ref|YP_600362.1| ATP-dependent endopeptidase Clp ATP-binding subunit clpL
[Streptococcus pyogenes MGAS2096]
gi|417857099|ref|ZP_12502158.1| ATP-dependent endopeptidase Clp ATP-binding subunit clpL
[Streptococcus pyogenes HKU QMH11M0907901]
gi|94541889|gb|ABF31938.1| ATP-dependent endopeptidase clp ATP-binding subunit [Streptococcus
pyogenes MGAS9429]
gi|94545771|gb|ABF35818.1| ATP-dependent endopeptidase clp ATP-binding subunit clpL
[Streptococcus pyogenes MGAS2096]
gi|387934054|gb|EIK42167.1| ATP-dependent endopeptidase Clp ATP-binding subunit clpL
[Streptococcus pyogenes HKU QMH11M0907901]
Length = 699
Score = 46.6 bits (109), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + ND + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDLFGSKDAIIRLDMSEYNDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 506 NNNTLTERVRRNPYAIVLLDEIEKADPQIITLLLQVLDDGRLTDGQGNTI 555
>gi|71903339|ref|YP_280142.1| ATP-dependent protease ATP-binding subunit [Streptococcus pyogenes
MGAS6180]
gi|71802434|gb|AAX71787.1| ATP-dependent protease ATP-binding subunit [Streptococcus pyogenes
MGAS6180]
Length = 699
Score = 46.6 bits (109), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + ND + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDLFGSKDAIIRLDMSEYNDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 506 NNNTLTERVRRNPYAIVLLDEIEKADPQIITLLLQVLDDGRLTDGQGNTI 555
>gi|333906007|ref|YP_004479878.1| stress response-related Clp ATPase [Streptococcus parauberis KCTC
11537]
gi|333121272|gb|AEF26206.1| stress response-related Clp ATPase [Streptococcus parauberis KCTC
11537]
Length = 814
Score = 46.6 bits (109), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 13/148 (8%)
Query: 3 EAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSS--EAHHFINPNTFWQNHA 60
+A +S TIK + + + + G G FS P+S+ + F T N
Sbjct: 155 QAAYSKETIK------AIHELRKPKKAKGAGSFSDMMKPASTAGDLSDFTRDLTEMANQG 208
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQEL 120
L +P ++I + +V RK + N V+VGD AL + R+ G +P EL
Sbjct: 209 LL---EPVIGRDKEITRMIQVLSRKTKNNPVLVGDAGVGKTALAYGLAQRIANGSIPYEL 265
Query: 121 KQTHVIKFHFAPVTL--RFMKKEEVEMN 146
+ V++ V RF E MN
Sbjct: 266 QDMRVLELDMMSVVAGTRFRGDFEERMN 293
>gi|418168442|ref|ZP_12805088.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA19077]
gi|421271997|ref|ZP_15722844.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae SPAR55]
gi|353836361|gb|EHE16449.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA19077]
gi|395877556|gb|EJG88625.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae SPAR55]
Length = 701
Score = 46.6 bits (109), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPVGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|341820740|emb|CCC57040.1| ATPase with chaperone activity, ATP-binding subunit [Weissella
thailandensis fsh4-2]
Length = 834
Score = 46.6 bits (109), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 27/161 (16%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDT 519
+++ S K + +L KVL + V Q +++ +I + +S K FL G
Sbjct: 506 TQMEKSEKDRLINLEKVLHDRVVGQDEAVSAIARSIRRARSGLKDPKRPIGTFLFLGPTG 565
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL 569
GK LA ++AE++FGS D + +DM + + S+ L+G+ Y EK+
Sbjct: 566 TGKTELAKALAEAMFGSEDNMIRVDMSEYREAYSASR--LVGSAPGYVGYEEGGQLTEKV 623
Query: 570 ------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
VVL+++ + A P +++ DGF T++ G+ +
Sbjct: 624 RRQPYSVVLLDEAEKAHPDIYNLMLQVFDDGFLTDSKGRKV 664
>gi|304405673|ref|ZP_07387332.1| ATPase AAA-2 domain protein [Paenibacillus curdlanolyticus YK9]
gi|304345712|gb|EFM11547.1| ATPase AAA-2 domain protein [Paenibacillus curdlanolyticus YK9]
Length = 822
Score = 46.6 bits (109), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
+ ++L + V Q D++ ++ + ++ K F+ G +GK LA ++AES
Sbjct: 502 MEEILHDRVIGQTDAVKAVSRAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG + + IDM ++ + HS L+G Y EK+ VVL+++
Sbjct: 562 IFGDENAVIRIDM---SEYMEKHSTSRLVGAPPGYVGYEEGGQLTEKVRRKPYSVVLLDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P+ +++L DG T++ G+V+
Sbjct: 619 IEKAHPEVFNILLQVLEDGRLTDSKGRVV 647
>gi|161506865|ref|YP_001576819.1| ATP-dependent Clp protease [Lactobacillus helveticus DPC 4571]
gi|160347854|gb|ABX26528.1| ATP-dependent Clp protease [Lactobacillus helveticus DPC 4571]
Length = 826
Score = 46.6 bits (109), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 27/152 (17%)
Query: 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALS 528
Q ++L +L + V Q ++ ++ + +S K FL G +GK LA S
Sbjct: 510 QLANLESILHKRVIGQDKAVSAVARAIHRSRSGIKDERRPIGSFLFLGPTGVGKTELAKS 569
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVL 572
+A ++FGS D L +DM + D ++S L+G+ Y E++ VVL
Sbjct: 570 VAAAMFGSEDNLIRLDMSEYMDQIASSK--LIGSAPGYVGYEEGGQLSEQVRRHPYSVVL 627
Query: 573 VEDIDLADPQ----FIKILADGFETENFGKVI 600
+++++ A P +++L +GF T++ G+ +
Sbjct: 628 LDEVEKAHPDVFNLLLQVLDEGFLTDSKGRKV 659
>gi|94994182|ref|YP_602280.1| ATP-dependent endopeptidase clp ATP-binding subunit clpL
[Streptococcus pyogenes MGAS10750]
gi|94547690|gb|ABF37736.1| ATP-dependent endopeptidase clp ATP-binding subunit clpL
[Streptococcus pyogenes MGAS10750]
Length = 699
Score = 46.6 bits (109), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + ND + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDLFGSKDAIIRLDMSEYNDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 506 NNNTLTERVRRNPYAIVLLDEIEKADPQIITLLLQVLDDGRLTDGQGNTI 555
>gi|410594723|ref|YP_006951450.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
agalactiae SA20-06]
gi|410518362|gb|AFV72506.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
agalactiae SA20-06]
Length = 702
Score = 46.6 bits (109), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 26/165 (15%)
Query: 460 LALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLL 514
+ + N SD +L+ +L L+ V Q D++ ++ + ++ + FL
Sbjct: 395 VPVSNMGASDIERLK--ELGNRLKGKVIGQNDAVEAVARAIRRNRAGFDDGNRPIGSFLF 452
Query: 515 QGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND---------------GVSSHSEML 559
G +GK LA +A +FGS D + +DM + ND G +S L
Sbjct: 453 VGPTGVGKTELAKQLAFDMFGSKDAIVRLDMSEYNDRTAVSKLIGATAGYVGYDDNSNTL 512
Query: 560 MGTLKNYEKLVVLVEDIDLADPQFI----KILADGFETENFGKVI 600
++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 513 TERIRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 557
>gi|329115750|ref|ZP_08244467.1| chaperone protein ClpB [Streptococcus parauberis NCFD 2020]
gi|326906155|gb|EGE53069.1| chaperone protein ClpB [Streptococcus parauberis NCFD 2020]
gi|456369788|gb|EMF48688.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Streptococcus
parauberis KRS-02109]
gi|457094452|gb|EMG24971.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
parauberis KRS-02083]
Length = 814
Score = 46.6 bits (109), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 13/148 (8%)
Query: 3 EAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSS--EAHHFINPNTFWQNHA 60
+A +S TIK + + + + G G FS P+S+ + F T N
Sbjct: 155 QAAYSKETIK------AIHELRKPKKAKGAGSFSDMMKPASTAGDLSDFTRDLTEMANQG 208
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQEL 120
L +P ++I + +V RK + N V+VGD AL + R+ G +P EL
Sbjct: 209 LL---EPVIGRDKEITRMIQVLSRKTKNNPVLVGDAGVGKTALAYGLAQRIANGSIPYEL 265
Query: 121 KQTHVIKFHFAPVT--LRFMKKEEVEMN 146
+ V++ V RF E MN
Sbjct: 266 QDMRVLELDMMSVVAGTRFRGDFEERMN 293
>gi|417005631|ref|ZP_11944224.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
agalactiae FSL S3-026]
gi|341577444|gb|EGS27852.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
agalactiae FSL S3-026]
Length = 702
Score = 46.2 bits (108), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 26/165 (15%)
Query: 460 LALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLL 514
+ + N SD +L+ +L L+ V Q D++ ++ + ++ + FL
Sbjct: 395 VPVSNMGASDIERLK--ELGNRLKGKVIGQNDAVEAVARAIRRNRAGFDDGNRPIGSFLF 452
Query: 515 QGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND---------------GVSSHSEML 559
G +GK LA +A +FGS D + +DM + ND G +S L
Sbjct: 453 VGPTGVGKTELAKQLAFDMFGSKDAIVRLDMSEYNDRTAVSKLIGATAGYVGYDDNSNTL 512
Query: 560 MGTLKNYEKLVVLVEDIDLADPQFI----KILADGFETENFGKVI 600
++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 513 TERIRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 557
>gi|339301304|ref|ZP_08650412.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
agalactiae ATCC 13813]
gi|319745303|gb|EFV97621.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
agalactiae ATCC 13813]
Length = 702
Score = 46.2 bits (108), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 26/165 (15%)
Query: 460 LALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLL 514
+ + N SD +L+ +L L+ V Q D++ ++ + ++ + FL
Sbjct: 395 VPVSNMGASDIERLK--ELGNRLKGKVIGQNDAVEAVARAIRRNRAGFDDGNRPIGSFLF 452
Query: 515 QGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND---------------GVSSHSEML 559
G +GK LA +A +FGS D + +DM + ND G +S L
Sbjct: 453 VGPTGVGKTELAKQLAFDMFGSKDAIVRLDMSEYNDRTAVSKLIGATAGYVGYDDNSNTL 512
Query: 560 MGTLKNYEKLVVLVEDIDLADPQFI----KILADGFETENFGKVI 600
++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 513 TERIRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 557
>gi|22537450|ref|NP_688301.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
agalactiae 2603V/R]
gi|421148130|ref|ZP_15607796.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
agalactiae GB00112]
gi|22534327|gb|AAN00174.1|AE014251_18 ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
agalactiae 2603V/R]
gi|401685106|gb|EJS81120.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
agalactiae GB00112]
Length = 702
Score = 46.2 bits (108), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 26/165 (15%)
Query: 460 LALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLL 514
+ + N SD +L+ +L L+ V Q D++ ++ + ++ + FL
Sbjct: 395 VPVSNMGASDIERLK--ELGNRLKGKVIGQNDAVEAVARAIRRNRAGFDDGNRPIGSFLF 452
Query: 515 QGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND---------------GVSSHSEML 559
G +GK LA +A +FGS D + +DM + ND G +S L
Sbjct: 453 VGPTGVGKTELAKQLAFDMFGSKDAIVRLDMSEYNDRTAVSKLIGATAGYVGYDDNSNTL 512
Query: 560 MGTLKNYEKLVVLVEDIDLADPQFI----KILADGFETENFGKVI 600
++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 513 TERIRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 557
>gi|76799283|ref|ZP_00781451.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
agalactiae 18RS21]
gi|76585360|gb|EAO61950.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
agalactiae 18RS21]
Length = 702
Score = 46.2 bits (108), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 26/165 (15%)
Query: 460 LALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLL 514
+ + N SD +L+ +L L+ V Q D++ ++ + ++ + FL
Sbjct: 395 VPVSNMGASDIERLK--ELGNRLKGKVIGQNDAVEAVARAIRRNRAGFDDGNRPIGSFLF 452
Query: 515 QGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND---------------GVSSHSEML 559
G +GK LA +A +FGS D + +DM + ND G +S L
Sbjct: 453 VGPTGVGKTELAKQLAFDMFGSKDAIVRLDMSEYNDRTAVSKLIGATAGYVGYDDNSNTL 512
Query: 560 MGTLKNYEKLVVLVEDIDLADPQFI----KILADGFETENFGKVI 600
++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 513 TERIRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 557
>gi|260102347|ref|ZP_05752584.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
gi|417013587|ref|ZP_11946672.1| ATP-dependent Clp protease [Lactobacillus helveticus MTCC 5463]
gi|112148328|gb|ABI13536.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
helveticus CNRZ32]
gi|260083856|gb|EEW67976.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
gi|328463471|gb|EGF35122.1| ATP-dependent Clp protease [Lactobacillus helveticus MTCC 5463]
Length = 826
Score = 46.2 bits (108), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 27/152 (17%)
Query: 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALS 528
Q ++L +L + V Q ++ ++ + +S K FL G +GK LA S
Sbjct: 510 QLANLESILHKRVIGQDKAVSAVARAIHRSRSGIKDERRPIGSFLFLGPTGVGKTELAKS 569
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVL 572
+A ++FGS D L +DM + D ++S L+G+ Y E++ VVL
Sbjct: 570 VAAAMFGSEDNLIRLDMSEYMDQIASSK--LIGSAPGYVGYEEGGQLSEQVRRHPYSVVL 627
Query: 573 VEDIDLADPQ----FIKILADGFETENFGKVI 600
+++++ A P +++L +GF T++ G+ +
Sbjct: 628 LDEVEKAHPDVFNLLLQVLDEGFLTDSKGRKV 659
>gi|253751245|ref|YP_003024386.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus suis
SC84]
gi|253753146|ref|YP_003026286.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus suis
P1/7]
gi|386577350|ref|YP_006073755.1| AAA ATPase [Streptococcus suis GZ1]
gi|386579330|ref|YP_006075735.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus suis JS14]
gi|386581394|ref|YP_006077798.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus suis SS12]
gi|386587625|ref|YP_006084026.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus suis A7]
gi|403061035|ref|YP_006649251.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus suis
S735]
gi|251815534|emb|CAZ51116.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus suis SC84]
gi|251819391|emb|CAR44823.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus suis P1/7]
gi|292557812|gb|ADE30813.1| AAA ATPase, central region [Streptococcus suis GZ1]
gi|319757522|gb|ADV69464.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus suis JS14]
gi|353733540|gb|AER14550.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus suis SS12]
gi|354984786|gb|AER43684.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus suis A7]
gi|402808361|gb|AFQ99852.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus suis S735]
Length = 699
Score = 46.2 bits (108), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 38/186 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ +L L NV Q D++ ++ + ++ + FL G +GK
Sbjct: 399 SDIERLK--ELKNRLAANVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGK 456
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 457 TELAKQLALDLFGNKDAIIRLDMSEYSDRTAVSK--LIGTTAGYIGYDDNSHTLTERVRR 514
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNY--EE 613
+VL+++I+ ADPQ I ++L DG T+ NF I + T Y E
Sbjct: 515 NPYSIVLMDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTIIIATSNAGFGYGMAE 574
Query: 614 RIENQD 619
ENQD
Sbjct: 575 GEENQD 580
>gi|212639808|ref|YP_002316328.1| ATP-dependent Clp protease-like protein [Anoxybacillus flavithermus
WK1]
gi|212561288|gb|ACJ34343.1| ATP-dependent Clp protease-like protein [Anoxybacillus flavithermus
WK1]
Length = 721
Score = 46.2 bits (108), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 25/185 (13%)
Query: 439 QGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVE 498
Q +P +D + E K + +G + + K++ L + L + V Q +++ I +
Sbjct: 401 QAEQPIVDVAHIQQIIEEKTGIPVGKLQAEEQTKMKH--LEENLAKKVIGQEEAVRKIAK 458
Query: 499 VLVECKSAKKAT-----WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND--- 550
+ ++ KA FL G +GK L+ ++AE +FGSTD + +DM + +
Sbjct: 459 AIRRSRAGLKAKNRPIGSFLFVGPTGVGKTELSKTLAEQLFGSTDAMIRLDMSEYMEKHA 518
Query: 551 ---------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADP----QFIKILADGFETEN 595
G H E L ++ ++L+++++ A P F++IL DG T++
Sbjct: 519 VSKLIGAPPGYVGHEEAGQLTEKVRRNPYSIILLDEMEKAHPDVQHMFLQILEDGRLTDS 578
Query: 596 FGKVI 600
G+ +
Sbjct: 579 QGRTV 583
>gi|25011418|ref|NP_735813.1| hypothetical protein gbs1376 [Streptococcus agalactiae NEM316]
gi|76787079|ref|YP_329946.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
agalactiae A909]
gi|77406711|ref|ZP_00783750.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
agalactiae H36B]
gi|406709697|ref|YP_006764423.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
agalactiae GD201008-001]
gi|424049240|ref|ZP_17786791.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
agalactiae ZQ0910]
gi|24412956|emb|CAD47035.1| unknown [Streptococcus agalactiae NEM316]
gi|76562136|gb|ABA44720.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
agalactiae A909]
gi|77174674|gb|EAO77504.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
agalactiae H36B]
gi|389649440|gb|EIM70922.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
agalactiae ZQ0910]
gi|406650582|gb|AFS45983.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
agalactiae GD201008-001]
Length = 702
Score = 46.2 bits (108), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 26/165 (15%)
Query: 460 LALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLL 514
+ + N SD +L+ +L L+ V Q D++ ++ + ++ + FL
Sbjct: 395 VPVSNMGASDIERLK--ELGNRLKGKVIGQNDAVEAVARAIRRNRAGFDDGNRPIGSFLF 452
Query: 515 QGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND---------------GVSSHSEML 559
G +GK LA +A +FGS D + +DM + ND G +S L
Sbjct: 453 VGPTGVGKTELAKQLAFDMFGSKDAIVRLDMSEYNDRTAVSKLIGATAGYVGYDDNSNTL 512
Query: 560 MGTLKNYEKLVVLVEDIDLADPQFI----KILADGFETENFGKVI 600
++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 513 TERIRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 557
>gi|42561142|ref|NP_975593.1| ATP dependent protease ClpB [Mycoplasma mycoides subsp. mycoides SC
str. PG1]
gi|42492640|emb|CAE77235.1| ATP dependant protease ClpB [Mycoplasma mycoides subsp. mycoides SC
str. PG1]
gi|301320486|gb|ADK69129.1| chaperone protein ClpB [Mycoplasma mycoides subsp. mycoides SC str.
Gladysdale]
Length = 713
Score = 46.2 bits (108), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 112/589 (19%), Positives = 227/589 (38%), Gaps = 87/589 (14%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P +E+I V ++ RK + N V++G+ A+V R+ +GDVP LK ++
Sbjct: 31 PVIGREEEISRVIQILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPTLLKNKRIL 90
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNF 186
+ + M + E + +K V+ + G I++ +L V + NN+
Sbjct: 91 ELDMGSLMAGAMYMGDYE---SRVKAVVNEIQKSNGEIILFIDELHLIVGAGRTGNNSGM 147
Query: 187 NGEIASCYNPINHLVSEVGKLVS-DCNSASSTRVWLMATASYQ-TYMKCQMRQPPLEIQW 244
+ +++ P G+L + + + R ++ A+ + + + + +P ++
Sbjct: 148 D--VSNLLKP----ALARGELKAIGSTTLNEYRQYIEKDAALERRFQRVLVSEPTID--- 198
Query: 245 ALQAVSIPSGGLGL--SLHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCAECT 302
Q +SI G + H +H++ L + S + T + + D CA
Sbjct: 199 --QTISILRGLKDRFETYHGVRIHDNALVSAVKLSSRYITDRYLPDKAIDLVDEACASIR 256
Query: 303 SNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQKDELVEMRRKWNRSCHSLHQGRHTQSQF 362
+ +K++ L+ +S+ +KD+ + + +W + L + Q+
Sbjct: 257 TELASVPIELDQVNRKVM--QLEIETSALEKEKDD--KSKERWQEAKKELDSLKIEQASL 312
Query: 363 SSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSISFA---ESAMKPHNSSNSVAKFR 419
+ + + S S+ + + + A + ++ P + S+A F
Sbjct: 313 NEKWEKEKEELSRINSVKSSIESLKQELETAQNDGNYKRAGEIQYSLLP-SLEKSLALFE 371
Query: 420 RQQSCSTI-----EFNFGNCTRKPQGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQ 474
+Q I E K G+ +D L S+E +++ L
Sbjct: 372 KQTGSKMISEEVTEHEIAKVVSKSTGI--LVDRLISSEKEKL----------------LN 413
Query: 475 RSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSI 529
DL L++ V Q +I ++ ++ +S K FL G +GK +A S+
Sbjct: 414 LEDL---LKKYVKGQDQAIKAVTSAIMRSRSGIKNPDKPIGSFLFLGPTGVGKTEVARSL 470
Query: 530 AESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL----------------VVL 572
A+ +F S + +DM ++ + HS L+G Y +VL
Sbjct: 471 ADILFNSPKKMIRLDM---SEYMEKHSVAKLIGAPPGYVGYEEGGRLTEAVRRNPYSIVL 527
Query: 573 VEDIDLADPQ----FIKILADGFETENFGK------VIFVLTKGDSSNY 611
++I+ A ++IL DG T++ GK I V+T +S Y
Sbjct: 528 FDEIEKAHTDVFNILLQILDDGRLTDSLGKTIDFKNTIIVMTSNIASQY 576
>gi|421531954|ref|ZP_15978329.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
agalactiae STIR-CD-17]
gi|403642854|gb|EJZ03660.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
agalactiae STIR-CD-17]
Length = 702
Score = 46.2 bits (108), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 26/161 (16%)
Query: 464 NSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGND 518
N SD +L+ +L L+ V Q D++ ++ + ++ + FL G
Sbjct: 399 NMGASDIERLK--ELGNRLKGKVIGQNDAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPT 456
Query: 519 TIGKRRLALSIAESVFGSTDLLFHIDMRKRND---------------GVSSHSEMLMGTL 563
+GK LA +A +FGS D + +DM + ND G +S L +
Sbjct: 457 GVGKTELAKQLAFDMFGSKDAIVRLDMSEYNDRTAVSKLIGATAGYVGYDDNSNTLTERI 516
Query: 564 KNYEKLVVLVEDIDLADPQFI----KILADGFETENFGKVI 600
+ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 517 RRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 557
>gi|256851628|ref|ZP_05557016.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Lactobacillus
jensenii 27-2-CHN]
gi|260661655|ref|ZP_05862567.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Lactobacillus
jensenii 115-3-CHN]
gi|297205235|ref|ZP_06922631.1| ATP-dependent Clp protease [Lactobacillus jensenii JV-V16]
gi|256615586|gb|EEU20775.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Lactobacillus
jensenii 27-2-CHN]
gi|260547712|gb|EEX23690.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Lactobacillus
jensenii 115-3-CHN]
gi|297149813|gb|EFH30110.1| ATP-dependent Clp protease [Lactobacillus jensenii JV-V16]
Length = 679
Score = 46.2 bits (108), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 28/161 (17%)
Query: 465 SEL-SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVE---CKSAKKATW-FLLQGNDT 519
SEL +D AK + DL K L+ V Q +I I + + K + T FLL G
Sbjct: 370 SELHADEAK-KNLDLAKKLKSVVIDQDKAIDIITDAIARKQVFKDTNRPTGSFLLTGPTG 428
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL 569
+GK LA +A+ +FG +D L +DM + D ++ + L+G+ Y EK+
Sbjct: 429 VGKTELAKQLAKELFGGSDHLIRLDMSEYQDQMAVNK--LIGSAPGYVGYGEGGQLTEKV 486
Query: 570 ------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++L+++I+ A+PQ ++IL DG T+ G+ +
Sbjct: 487 RHEPYSLILLDEIEKANPQVFNALLQILDDGRLTDAQGRTV 527
>gi|381209029|ref|ZP_09916100.1| ATP-dependent Clp proteinase [Lentibacillus sp. Grbi]
Length = 709
Score = 46.2 bits (108), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 23/147 (15%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAE 531
DL K L E V Q +++ + + + ++ K+ + FL G +GK L ++AE
Sbjct: 413 DLGKNLGEKVIGQDEAVQKVAKAVRRSRAGLKSKYRPIGSFLFVGPTGVGKTELTKALAE 472
Query: 532 SVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDID 577
+FGS D L +DM + + G H E L ++ ++L+++I+
Sbjct: 473 ELFGSRDSLIRLDMSEYMEKHATSKIIGSPPGYVGHEEAGQLTEKVRRNPYSILLLDEIE 532
Query: 578 LADP----QFIKILADGFETENFGKVI 600
A P F++I+ DG T++ G+ +
Sbjct: 533 KAHPDVQNMFLQIMEDGQLTDSHGRTV 559
>gi|223932639|ref|ZP_03624639.1| ATPase AAA-2 domain protein [Streptococcus suis 89/1591]
gi|223898749|gb|EEF65110.1| ATPase AAA-2 domain protein [Streptococcus suis 89/1591]
Length = 699
Score = 46.2 bits (108), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 38/186 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ +L L NV Q D++ ++ + ++ + FL G +GK
Sbjct: 399 SDIERLK--ELKNRLAANVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGK 456
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 457 TELAKQLALDLFGNKDAIIRLDMSEYSDRTAVSK--LIGTTAGYIGYDDNSHTLTERVRR 514
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNY--EE 613
+VL+++I+ ADPQ I ++L DG T+ NF I + T Y E
Sbjct: 515 NPYSIVLLDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTIIIATSNAGFGYGMAE 574
Query: 614 RIENQD 619
ENQD
Sbjct: 575 GEENQD 580
>gi|389856075|ref|YP_006358318.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus suis ST1]
gi|353739793|gb|AER20800.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus suis ST1]
Length = 699
Score = 46.2 bits (108), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 38/186 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ +L L NV Q D++ ++ + ++ + FL G +GK
Sbjct: 399 SDIERLK--ELKNRLAANVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGK 456
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 457 TELAKQLALDLFGNKDAIIRLDMSEYSDRTAVSK--LIGTTAGYIGYDDNSHTLTERVRR 514
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNY--EE 613
+VL+++I+ ADPQ I ++L DG T+ NF I + T Y E
Sbjct: 515 NPYSIVLLDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTIIIATSNAGFGYGMAE 574
Query: 614 RIENQD 619
ENQD
Sbjct: 575 GEENQD 580
>gi|259502520|ref|ZP_05745422.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
gi|259169472|gb|EEW53967.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
Length = 827
Score = 46.2 bits (108), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L KVL V Q +++ ++ + + +S K F+ G +GK LA ++AE
Sbjct: 510 NLEKVLHRRVIGQNEAVDAVAKAIRRARSGLKNPNRPIGSFMFLGPTGVGKTELAKALAE 569
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 570 AMFGSEDNMIRIDMSEYMEKFSTSR--LIGAAPGYVGYDEGGQLTEKVRQHPYSVVLLDE 627
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
+ A P +++L DG+ T++ G+ +
Sbjct: 628 AEKAHPDVFNLLLQVLDDGYLTDSKGRRV 656
>gi|386585547|ref|YP_006081949.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus suis D12]
gi|353737693|gb|AER18701.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus suis D12]
Length = 699
Score = 46.2 bits (108), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 38/186 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ +L L NV Q D++ ++ + ++ + FL G +GK
Sbjct: 399 SDIERLK--ELKNRLAANVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGK 456
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 457 TELAKQLALDLFGNKDAIIRLDMSEYSDRTAVSK--LIGTTAGYIGYDDNSHTLTERVRR 514
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNY--EE 613
+VL+++I+ ADPQ I ++L DG T+ NF I + T Y E
Sbjct: 515 NPYSIVLLDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTIIIATSNAGFGYGMAE 574
Query: 614 RIENQD 619
ENQD
Sbjct: 575 GEENQD 580
>gi|395241146|ref|ZP_10418165.1| ATP-dependent Clp protease [Lactobacillus pasteurii CRBIP 24.76]
gi|394481673|emb|CCI84405.1| ATP-dependent Clp protease [Lactobacillus pasteurii CRBIP 24.76]
Length = 681
Score = 46.2 bits (108), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 28/161 (17%)
Query: 465 SEL-SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK----SAKKATWFLLQGNDT 519
SEL +D AK + DL K L+E V Q +I I + + + S + FLL G
Sbjct: 367 SELHADEAK-KNLDLAKSLKEVVIDQDKAIDVITDAVARKQLFKDSNRPTGSFLLTGPTG 425
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL 569
+GK LA +A +FGS D +DM + D ++ + L+G+ Y EK+
Sbjct: 426 VGKTELAKQLATKLFGSRDHFIRLDMSEYQDQMAINK--LIGSAPGYVGYGEGGQLTEKV 483
Query: 570 ------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++L ++I+ A+PQ ++I+ DG T++ G+ +
Sbjct: 484 RHQPYSLILFDEIEKANPQVFNALLQIMDDGRLTDSQGRTV 524
Score = 39.7 bits (91), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 32/190 (16%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P E I V E+ R+K+ N V++G ++V R+ G VP ++K H++
Sbjct: 66 PVIGRDEQIDNVIEILSRRKKNNPVLIGPAGVGKTSIVEGLAQRIAAGKVPAKMKNMHIV 125
Query: 127 KFHF----APVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNN 182
+ A +LR +E +LK+ +D I++ +L V +++
Sbjct: 126 AININDMVAGTSLRGSFEE-------KLKKVIDQAKQ-NPNIILFIDELHNIVGAGSTDS 177
Query: 183 NNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEI 242
NN NG+ A+ P + +S + L+ + Y + + + P L
Sbjct: 178 ENN-NGDAANILKP----------------ALASGELKLIGATTTSEYQRIE-KDPALAR 219
Query: 243 QWALQAVSIP 252
++ QAV +P
Sbjct: 220 RF--QAVEVP 227
>gi|379070563|gb|AFC91876.1| ClpL [Streptococcus pneumoniae]
gi|379070565|gb|AFC91877.1| ClpL [Streptococcus pneumoniae]
gi|379070567|gb|AFC91878.1| ClpL [Streptococcus pneumoniae]
Length = 701
Score = 46.2 bits (108), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D ++ L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRIAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|330832216|ref|YP_004401041.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus suis
ST3]
gi|386583504|ref|YP_006079907.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus suis
D9]
gi|329306439|gb|AEB80855.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus suis
ST3]
gi|353735650|gb|AER16659.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus suis
D9]
Length = 699
Score = 46.2 bits (108), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 38/186 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ +L L NV Q D++ ++ + ++ + FL G +GK
Sbjct: 399 SDIERLK--ELKNRLAANVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGK 456
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 457 TELAKQLALDLFGNKDAIIRLDMSEYSDRTAVSK--LIGTTAGYIGYDDNSHTLTERVRR 514
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNY--EE 613
+VL+++I+ ADPQ I ++L DG T+ NF I + T Y E
Sbjct: 515 NPYSIVLLDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTIIIATSNAGFGYGMAE 574
Query: 614 RIENQD 619
ENQD
Sbjct: 575 GEENQD 580
>gi|241895220|ref|ZP_04782516.1| ATPase with chaperone activity, ATP-binding subunit [Weissella
paramesenteroides ATCC 33313]
gi|241871526|gb|EER75277.1| ATPase with chaperone activity, ATP-binding subunit [Weissella
paramesenteroides ATCC 33313]
Length = 834
Score = 46.2 bits (108), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 27/161 (16%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDT 519
+++ S K + +L KVL V Q +++ +I + +S K FL G
Sbjct: 506 TQMEKSEKDRLMNLEKVLHNRVVGQNEAVSAIARSIRRARSGLKDPKRPIGTFLFLGPTG 565
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL 569
GK LA ++AE++FGS D + +DM + + S+ L+G+ Y EK+
Sbjct: 566 TGKTELAKALAEAMFGSEDNMIRVDMSEYREAYSASR--LVGSAPGYVGYEEGGQLTEKV 623
Query: 570 ------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
VVL+++ + A P +++ DGF T++ G+ +
Sbjct: 624 RRQPYSVVLLDEAEKAHPDIYNLMLQVFDDGFLTDSKGRKV 664
>gi|226356201|ref|YP_002785941.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Deinococcus
deserti VCD115]
gi|226318191|gb|ACO46187.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpC
[Deinococcus deserti VCD115]
Length = 747
Score = 46.2 bits (108), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 29/159 (18%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
S+ Q SDL L E V Q D++ ++ L + + A FL G +GK
Sbjct: 433 SEETAAQLSDLDLQLSEQVYGQPDAVKALSSALRRARVGLGGRTRVAASFLFVGPSGVGK 492
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL------------ 569
LA ++A ++F S L +DM + + SHS L+G+ Y
Sbjct: 493 THLAKALARTLFSSERALIRVDMSEFQE---SHSISKLIGSPPGYVGFEQGGRLTEAVRR 549
Query: 570 ----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
V+L+++I+ A P F+++L DG T+ G+ +
Sbjct: 550 QPFSVILLDEIEKAHPDVYNTFLQVLDDGRLTDGLGRTV 588
>gi|148994369|ref|ZP_01823612.1| ATP-dependent Clp protease, ATP-binding subunit, putative
[Streptococcus pneumoniae SP9-BS68]
gi|147927300|gb|EDK78333.1| ATP-dependent Clp protease, ATP-binding subunit, putative
[Streptococcus pneumoniae SP9-BS68]
Length = 527
Score = 46.2 bits (108), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ IGK
Sbjct: 263 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGIGK 320
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 321 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 378
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 379 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVVIATSNAGFGYE 435
>gi|149013063|ref|ZP_01833929.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae SP19-BS75]
gi|147763098|gb|EDK70040.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae SP19-BS75]
Length = 701
Score = 46.2 bits (108), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQE V Q ++ + + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQEKVIGQDKAVEVVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|116334279|ref|YP_795806.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus brevis ATCC 367]
gi|116099626|gb|ABJ64775.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus brevis ATCC 367]
Length = 828
Score = 46.2 bits (108), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L K+L + V Q +++ ++ + +S K F+ G +GK LA ++AE
Sbjct: 512 NLEKILHQRVIGQSEAVSAVSRAIRRARSGLKDPNRPIGSFMFLGPTGVGKTELAKALAE 571
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D + +DM + + S+ L+G+ Y EK+ VVL ++
Sbjct: 572 AMFGSEDNMIRVDMSEYMEKYSTSR--LIGSAPGYVGYDEGGQLTEKVRQKPYSVVLFDE 629
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG+ T++ G+ +
Sbjct: 630 VEKAHPDVFNILLQVLDDGYLTDSKGRKV 658
>gi|257871152|ref|ZP_05650805.1| ATP-dependent Clp protease [Enterococcus gallinarum EG2]
gi|257805316|gb|EEV34138.1| ATP-dependent Clp protease [Enterococcus gallinarum EG2]
Length = 827
Score = 46.2 bits (108), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
DL K+L + V Q +++ ++ + +S K F+ G +GK LA ++AE
Sbjct: 512 DLEKILHQRVVGQEEAVKAVARSIRRARSGLKDPNRPIGSFMFLGPTGVGKTELAKALAE 571
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 572 AMFGSEDSLVRVDMSEFMEKYSTSR--LIGSPPGYVGYDEGGQLTEKIRSKPYSVILLDE 629
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 630 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 658
>gi|418165970|ref|ZP_12802628.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA17971]
gi|353832065|gb|EHE12188.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA17971]
Length = 701
Score = 46.2 bits (108), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|357048825|ref|ZP_09110059.1| hypothetical protein HMPREF9478_00042 [Enterococcus saccharolyticus
30_1]
gi|355384778|gb|EHG31836.1| hypothetical protein HMPREF9478_00042 [Enterococcus saccharolyticus
30_1]
Length = 824
Score = 45.8 bits (107), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
DL K+L + V Q +++ ++ + +S K F+ G +GK LA ++AE
Sbjct: 509 DLEKILHQRVVGQEEAVKAVARSIRRARSGLKDPNRPIGSFMFLGPTGVGKTELAKALAE 568
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 569 AMFGSEDSLVRVDMSEFMEKYSTSR--LIGSPPGYVGYDEGGQLTEKIRSKPYSVILLDE 626
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 627 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 655
>gi|419459213|ref|ZP_13999149.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA02270]
gi|379534085|gb|EHY99297.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA02270]
Length = 691
Score = 45.8 bits (107), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 391 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 448
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 449 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 506
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 507 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 563
>gi|336392462|ref|ZP_08573861.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus coryniformis subsp. torquens KCTC 3535]
Length = 830
Score = 45.8 bits (107), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 33/160 (20%)
Query: 472 KLQRSD------LYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTI 520
+LQ+S+ L KVL + V Q +++ ++ + +S K F+ G +
Sbjct: 502 QLQKSETERLINLEKVLHKRVIGQEEAVSAVSRAIRRARSGLKDPQRPIGSFMFLGPTGV 561
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL- 569
GK LA ++AE++FGS D + +DM + + S+ L+G Y EK+
Sbjct: 562 GKTELAKALAEAMFGSEDNMIRVDMSEYMEKYSTSR--LVGAPPGYVGYEEGGQLTEKVR 619
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
VVL+++++ A P +++L DG+ T++ G+ +
Sbjct: 620 QKPYSVVLLDEVEKAHPDVFNILLQVLDDGYLTDSKGRRV 659
>gi|333396625|ref|ZP_08478442.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus coryniformis subsp. coryniformis KCTC
3167]
Length = 829
Score = 45.8 bits (107), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 33/160 (20%)
Query: 472 KLQRSD------LYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTI 520
+LQ+S+ L KVL + V Q +++ ++ + +S K F+ G +
Sbjct: 501 QLQKSETERLINLEKVLHKRVIGQEEAVSAVSRAIRRARSGLKDPQRPIGSFMFLGPTGV 560
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL- 569
GK LA ++AE++FGS D + +DM + + S+ L+G Y EK+
Sbjct: 561 GKTELAKALAEAMFGSEDNMIRVDMSEYMEKYSTSR--LVGAPPGYVGYEEGGQLTEKVR 618
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
VVL+++++ A P +++L DG+ T++ G+ +
Sbjct: 619 QKPYSVVLLDEVEKAHPDVFNILLQVLDDGYLTDSKGRRV 658
>gi|418090973|ref|ZP_12728118.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA44452]
gi|419488175|ref|ZP_14027928.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA44386]
gi|353766346|gb|EHD46886.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA44452]
gi|379590290|gb|EHZ55128.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA44386]
Length = 691
Score = 45.8 bits (107), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 391 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 448
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 449 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 506
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 507 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 563
>gi|417695509|ref|ZP_12344689.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47368]
gi|418106685|ref|ZP_12743731.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA41410]
gi|418109314|ref|ZP_12746343.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA49447]
gi|418120442|ref|ZP_12757390.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA44194]
gi|418220287|ref|ZP_12846944.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47751]
gi|419422550|ref|ZP_13962769.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA43264]
gi|332203506|gb|EGJ17573.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47368]
gi|353781599|gb|EHD62041.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA41410]
gi|353784607|gb|EHD65027.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA49447]
gi|353794997|gb|EHD75349.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA44194]
gi|353878084|gb|EHE57923.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47751]
gi|379589881|gb|EHZ54720.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA43264]
Length = 701
Score = 45.8 bits (107), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|148983746|ref|ZP_01817065.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae SP3-BS71]
gi|387756878|ref|YP_006063857.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus pneumoniae OXC141]
gi|418231475|ref|ZP_12858064.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA07228]
gi|418235769|ref|ZP_12862338.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA19690]
gi|419479230|ref|ZP_14019042.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA19101]
gi|147923893|gb|EDK75005.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae SP3-BS71]
gi|301799467|emb|CBW32007.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus pneumoniae OXC141]
gi|353889141|gb|EHE68913.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA07228]
gi|353893698|gb|EHE73443.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA19690]
gi|379574053|gb|EHZ38999.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA19101]
gi|429317312|emb|CCP37073.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus pneumoniae SPN034156]
gi|429318854|emb|CCP32064.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus pneumoniae SPN034183]
gi|429320667|emb|CCP34037.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus pneumoniae SPN994039]
gi|429322487|emb|CCP30078.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus pneumoniae SPN994038]
Length = 701
Score = 45.8 bits (107), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|419468246|ref|ZP_14008119.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA06083]
gi|379548516|gb|EHZ13648.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA06083]
Length = 691
Score = 45.8 bits (107), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 391 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 448
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 449 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 506
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 507 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 563
>gi|418181959|ref|ZP_12818520.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA43380]
gi|353850196|gb|EHE30200.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA43380]
Length = 691
Score = 45.8 bits (107), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 391 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 448
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 449 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 506
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 507 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 563
>gi|377557290|ref|ZP_09786941.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
gastricus PS3]
gi|376165838|gb|EHS84774.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
gastricus PS3]
Length = 680
Score = 45.8 bits (107), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 19/108 (17%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND---------------GVSSHS 556
FL G +GK LA +A +FGSTD + +DM + +D G +S
Sbjct: 425 FLFVGPTGVGKTELAKQLALDMFGSTDDIIRLDMSEYSDRTAVSKLIGTTAGYVGYDDNS 484
Query: 557 EMLMGTLKNYEKLVVLVEDIDLADPQFI----KILADGFETENFGKVI 600
L ++ + +VL ++I+ ADPQ I ++L DG T+ G I
Sbjct: 485 NTLTEKVRRHPYSIVLFDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 532
>gi|418124963|ref|ZP_12761884.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA44511]
gi|418190806|ref|ZP_12827311.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47388]
gi|418213541|ref|ZP_12840276.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA54644]
gi|419483604|ref|ZP_14023380.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA43257]
gi|353800528|gb|EHD80838.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA44511]
gi|353858405|gb|EHE38365.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47388]
gi|353870824|gb|EHE50695.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA54644]
gi|379583115|gb|EHZ47992.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA43257]
Length = 701
Score = 45.8 bits (107), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|298254114|ref|ZP_06977700.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
pneumoniae str. Canada MDR_19A]
gi|298502143|ref|YP_003724083.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
pneumoniae TCH8431/19A]
gi|418075462|ref|ZP_12712704.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47502]
gi|418082246|ref|ZP_12719448.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA44288]
gi|418099926|ref|ZP_12737015.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 7286-06]
gi|418195142|ref|ZP_12831623.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47688]
gi|418222647|ref|ZP_12849293.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 5185-06]
gi|419435254|ref|ZP_13975350.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 8190-05]
gi|419496757|ref|ZP_14036469.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47522]
gi|421286865|ref|ZP_15737632.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae GA58771]
gi|298237738|gb|ADI68869.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
pneumoniae TCH8431/19A]
gi|353751476|gb|EHD32108.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47502]
gi|353757683|gb|EHD38276.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA44288]
gi|353773925|gb|EHD54420.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 7286-06]
gi|353863261|gb|EHE43190.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47688]
gi|353881735|gb|EHE61548.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 5185-06]
gi|379602882|gb|EHZ67652.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47522]
gi|379616923|gb|EHZ81616.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 8190-05]
gi|395891124|gb|EJH02127.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae GA58771]
Length = 701
Score = 45.8 bits (107), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|421248698|ref|ZP_15705161.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2082239]
gi|395615327|gb|EJG75343.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2082239]
Length = 701
Score = 45.8 bits (107), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|421210345|ref|ZP_15667337.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2070035]
gi|395576044|gb|EJG36604.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2070035]
Length = 701
Score = 45.8 bits (107), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|418104403|ref|ZP_12741463.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA44500]
gi|353778837|gb|EHD59303.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA44500]
Length = 701
Score = 45.8 bits (107), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|417091534|ref|ZP_11956411.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus suis R61]
gi|353533142|gb|EHC02809.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus suis R61]
Length = 699
Score = 45.8 bits (107), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 82/186 (44%), Gaps = 38/186 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ +L L NV Q D++ ++ + ++ + FL G +GK
Sbjct: 399 SDIERLK--ELKNRLATNVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGK 456
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 457 TELAKQLALDLFGNKDAVIRLDMSEYSDRTAVSK--LIGTTAGYIGYDDNSHTLTERVRR 514
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNY--EE 613
+VL+++I+ ADPQ I ++L DG T+ NF I + T Y E
Sbjct: 515 NPYSIVLLDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTIIIATSNAGFGYGMAE 574
Query: 614 RIENQD 619
ENQD
Sbjct: 575 GEENQD 580
>gi|303259434|ref|ZP_07345411.1| ATP-dependent Clp protease, ATP-binding subunit, putative
[Streptococcus pneumoniae SP-BS293]
gi|303261189|ref|ZP_07347138.1| ATP-dependent Clp protease, ATP-binding subunit, putative
[Streptococcus pneumoniae SP14-BS292]
gi|303263516|ref|ZP_07349439.1| ATP-dependent Clp protease, ATP-binding subunit, putative
[Streptococcus pneumoniae BS397]
gi|303265809|ref|ZP_07351707.1| ATP-dependent Clp protease, ATP-binding subunit, putative
[Streptococcus pneumoniae BS457]
gi|303267760|ref|ZP_07353562.1| ATP-dependent Clp protease, ATP-binding subunit, putative
[Streptococcus pneumoniae BS458]
gi|418138675|ref|ZP_12775507.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA13338]
gi|418179711|ref|ZP_12816286.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA41688]
gi|421295604|ref|ZP_15746319.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
pneumoniae GA58581]
gi|302638026|gb|EFL68512.1| ATP-dependent Clp protease, ATP-binding subunit, putative
[Streptococcus pneumoniae SP14-BS292]
gi|302639368|gb|EFL69826.1| ATP-dependent Clp protease, ATP-binding subunit, putative
[Streptococcus pneumoniae SP-BS293]
gi|302642456|gb|EFL72801.1| ATP-dependent Clp protease, ATP-binding subunit, putative
[Streptococcus pneumoniae BS458]
gi|302644717|gb|EFL74966.1| ATP-dependent Clp protease, ATP-binding subunit, putative
[Streptococcus pneumoniae BS457]
gi|302647289|gb|EFL77513.1| ATP-dependent Clp protease, ATP-binding subunit, putative
[Streptococcus pneumoniae BS397]
gi|353847133|gb|EHE27160.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA41688]
gi|353906382|gb|EHE81786.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA13338]
gi|395897673|gb|EJH08632.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
pneumoniae GA58581]
Length = 701
Score = 45.8 bits (107), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|225856080|ref|YP_002737591.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae P1031]
gi|444410558|ref|ZP_21207087.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0076]
gi|444413757|ref|ZP_21210072.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0153]
gi|444421648|ref|ZP_21217318.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0446]
gi|225725464|gb|ACO21316.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae P1031]
gi|444272928|gb|ELU78615.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0153]
gi|444277126|gb|ELU82646.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0076]
gi|444288857|gb|ELU93745.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0446]
Length = 701
Score = 45.8 bits (107), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|421300057|ref|ZP_15750729.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae GA19998]
gi|395901154|gb|EJH12091.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae GA19998]
Length = 691
Score = 45.8 bits (107), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 391 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 448
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 449 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 506
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 507 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 563
>gi|421237791|ref|ZP_15694364.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2071247]
gi|421244234|ref|ZP_15700739.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2081685]
gi|395605317|gb|EJG65448.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2071247]
gi|395611200|gb|EJG71274.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2081685]
Length = 701
Score = 45.8 bits (107), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQE V Q ++ + + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQEKVIGQDKAVEVVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVVIATSNAGFGYE 573
>gi|418186355|ref|ZP_12822886.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47360]
gi|419533779|ref|ZP_14073287.1| AAA domain family protein [Streptococcus pneumoniae GA17457]
gi|353854177|gb|EHE34157.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47360]
gi|379568741|gb|EHZ33720.1| AAA domain family protein [Streptococcus pneumoniae GA17457]
Length = 691
Score = 45.8 bits (107), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 391 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 448
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 449 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 506
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 507 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 563
>gi|418073202|ref|ZP_12710465.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA11184]
gi|353752740|gb|EHD33365.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA11184]
Length = 701
Score = 45.8 bits (107), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|417847806|ref|ZP_12493766.1| ATPase, AAA family [Streptococcus mitis SK1073]
gi|339456163|gb|EGP68757.1| ATPase, AAA family [Streptococcus mitis SK1073]
Length = 701
Score = 45.8 bits (107), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVAKAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+VL+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|419492507|ref|ZP_14032235.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47210]
gi|379596204|gb|EHZ61009.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47210]
Length = 704
Score = 45.8 bits (107), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 404 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 461
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 462 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 519
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 520 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 576
>gi|387758675|ref|YP_006065653.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus pneumoniae INV200]
gi|301801264|emb|CBW33939.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus pneumoniae INV200]
Length = 701
Score = 45.8 bits (107), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|288554696|ref|YP_003426631.1| class III stress response-related ATPase [Bacillus pseudofirmus
OF4]
gi|288545856|gb|ADC49739.1| class III stress response-related ATPase [Bacillus pseudofirmus
OF4]
Length = 813
Score = 45.8 bits (107), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
+ K+L E V Q +++ SI + + ++ K F+ G +GK LA ++AE+
Sbjct: 504 MEKILHERVVGQEEAVISISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARAVAET 563
Query: 533 VFGSTDLLFHIDMRKRNDGVSSH-SEMLMGTLKNY----------EKL------VVLVED 575
+FG D + IDM ++ + H + L+G+ Y EK+ V+L+++
Sbjct: 564 LFGDEDAVIRIDM---SEYMEKHATSRLVGSPPGYVGHEDGGQLTEKVRRKPYSVILLDE 620
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P+ +++L DG T++ G+ +
Sbjct: 621 IEKAHPEVFNILLQVLEDGRLTDSKGRTV 649
>gi|421190638|ref|ZP_15647934.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB422]
gi|421191393|ref|ZP_15648670.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB548]
gi|399969408|gb|EJO03748.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB422]
gi|399972216|gb|EJO06430.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB548]
Length = 720
Score = 45.8 bits (107), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D +S L+GT Y
Sbjct: 469 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSDLTASSK--LIGTSAGYVGYND 526
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
EK+ +VL+++I+ A+PQ I ++L DG T+ G V+
Sbjct: 527 NQNTLTEKVRRNPYSIVLLDEIEKANPQIITLLLQVLDDGRLTDGQGNVV 576
>gi|365926352|ref|ZP_09449115.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 821
Score = 45.8 bits (107), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 27/147 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
DL KVL + V Q +++ ++ + +S K F+ G +GK LA S+AE
Sbjct: 505 DLEKVLHKRVIGQDEAVSAVSRAIRRARSGLKDPNRPIGSFMFLGPTGVGKTELAKSLAE 564
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
+FGS D + IDM + + ++ L+G+ Y EK+ V+L ++
Sbjct: 565 VIFGSEDSMIRIDMSEYMEKYATSR--LIGSPPGYVGYEEGGQLTEKVRQHPYSVILFDE 622
Query: 576 IDLADPQ----FIKILADGFETENFGK 598
++ A P +++L DG+ +++ G+
Sbjct: 623 VEKAHPDVFNILLQVLDDGYLSDSKGR 649
>gi|418197262|ref|ZP_12833728.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47778]
gi|419424405|ref|ZP_13964608.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 7533-05]
gi|419426538|ref|ZP_13966722.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 5652-06]
gi|419430770|ref|ZP_13970916.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae EU-NP05]
gi|419443990|ref|ZP_13984005.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA19923]
gi|419446101|ref|ZP_13986107.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 7879-04]
gi|419450351|ref|ZP_13990340.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae EU-NP02]
gi|421308790|ref|ZP_15759421.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae GA62681]
gi|353865799|gb|EHE45706.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47778]
gi|379571683|gb|EHZ36640.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA19923]
gi|379615559|gb|EHZ80265.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 7879-04]
gi|379619498|gb|EHZ84170.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 5652-06]
gi|379621209|gb|EHZ85858.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 7533-05]
gi|379625496|gb|EHZ90123.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae EU-NP02]
gi|379632014|gb|EHZ96590.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae EU-NP05]
gi|395912935|gb|EJH23792.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae GA62681]
Length = 691
Score = 45.8 bits (107), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 391 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 448
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 449 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 506
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 507 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 563
>gi|148988096|ref|ZP_01819559.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae SP6-BS73]
gi|147926560|gb|EDK77633.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae SP6-BS73]
Length = 701
Score = 45.8 bits (107), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|421297803|ref|ZP_15748496.1| hypothetical protein SPAR161_0310 [Streptococcus pneumoniae
GA60080]
gi|395904260|gb|EJH15179.1| hypothetical protein SPAR161_0310 [Streptococcus pneumoniae
GA60080]
Length = 691
Score = 45.8 bits (107), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 391 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 448
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 449 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 506
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 507 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 563
>gi|421226514|ref|ZP_15683228.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2072047]
gi|395597584|gb|EJG57790.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2072047]
Length = 701
Score = 45.8 bits (107), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|383938730|ref|ZP_09991933.1| ATPase, AAA family [Streptococcus pseudopneumoniae SK674]
gi|383714382|gb|EID70385.1| ATPase, AAA family [Streptococcus pseudopneumoniae SK674]
Length = 701
Score = 45.8 bits (107), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|419513939|ref|ZP_14053567.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae England14-9]
gi|379638429|gb|EIA02974.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae England14-9]
Length = 691
Score = 45.8 bits (107), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 391 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 448
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 449 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 506
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 507 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 563
>gi|419481377|ref|ZP_14021173.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA40563]
gi|379582784|gb|EHZ47662.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA40563]
Length = 691
Score = 45.8 bits (107), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 391 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 448
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 449 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 506
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 507 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 563
>gi|168494678|ref|ZP_02718821.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae CDC3059-06]
gi|418097741|ref|ZP_12734843.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 6901-05]
gi|418134051|ref|ZP_12770911.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA11426]
gi|418229083|ref|ZP_12855693.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae EU-NP01]
gi|419463430|ref|ZP_14003326.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA04175]
gi|421280354|ref|ZP_15731153.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae GA04672]
gi|183575405|gb|EDT95933.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae CDC3059-06]
gi|353771897|gb|EHD52404.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 6901-05]
gi|353890920|gb|EHE70679.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae EU-NP01]
gi|353904038|gb|EHE79552.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA11426]
gi|379540709|gb|EHZ05880.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA04175]
gi|395883711|gb|EJG94753.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae GA04672]
Length = 701
Score = 45.8 bits (107), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|194397788|ref|YP_002037023.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
pneumoniae G54]
gi|419490307|ref|ZP_14030049.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47179]
gi|421274290|ref|ZP_15725122.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA52612]
gi|194357455|gb|ACF55903.1| ATP-dependent Clp protease, ATP-binding subunit, putative
[Streptococcus pneumoniae G54]
gi|379596587|gb|EHZ61391.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47179]
gi|395875018|gb|EJG86099.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA52612]
Length = 701
Score = 45.8 bits (107), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|419522547|ref|ZP_14062130.1| AAA domain family protein [Streptococcus pneumoniae GA13723]
gi|421289012|ref|ZP_15739764.1| hypothetical protein SPAR157_0350 [Streptococcus pneumoniae
GA54354]
gi|421304328|ref|ZP_15754986.1| hypothetical protein SPAR169_0384 [Streptococcus pneumoniae
GA62331]
gi|379560168|gb|EHZ25194.1| AAA domain family protein [Streptococcus pneumoniae GA13723]
gi|395890272|gb|EJH01278.1| hypothetical protein SPAR157_0350 [Streptococcus pneumoniae
GA54354]
gi|395906719|gb|EJH17617.1| hypothetical protein SPAR169_0384 [Streptococcus pneumoniae
GA62331]
Length = 691
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 391 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 448
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 449 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 506
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 507 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 563
>gi|418188580|ref|ZP_12825095.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47373]
gi|353855722|gb|EHE35691.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47373]
Length = 691
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 391 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 448
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 449 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 506
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 507 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 563
>gi|418974188|ref|ZP_13522111.1| ATPase, AAA family [Streptococcus pseudopneumoniae ATCC BAA-960]
gi|383345630|gb|EID23735.1| ATPase, AAA family [Streptococcus pseudopneumoniae ATCC BAA-960]
Length = 701
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|149001549|ref|ZP_01826522.1| S-ribosylhomocysteinase [Streptococcus pneumoniae SP14-BS69]
gi|237649371|ref|ZP_04523623.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae CCRI 1974]
gi|237821588|ref|ZP_04597433.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae CCRI 1974M2]
gi|418143117|ref|ZP_12779920.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA13494]
gi|419456920|ref|ZP_13996869.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA02254]
gi|147760007|gb|EDK66996.1| S-ribosylhomocysteinase [Streptococcus pneumoniae SP14-BS69]
gi|353810860|gb|EHD91110.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA13494]
gi|379533606|gb|EHY98819.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA02254]
Length = 701
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|418136396|ref|ZP_12773240.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA11663]
gi|419472436|ref|ZP_14012289.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA13430]
gi|353903454|gb|EHE78978.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA11663]
gi|379553338|gb|EHZ18422.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA13430]
Length = 701
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|417678302|ref|ZP_12327702.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA17570]
gi|419507428|ref|ZP_14047084.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA49542]
gi|332075186|gb|EGI85656.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA17570]
gi|379613563|gb|EHZ78275.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA49542]
Length = 632
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ IGK
Sbjct: 332 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGIGK 389
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 390 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 447
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 448 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVVIATSNAGFGYE 504
>gi|148996753|ref|ZP_01824471.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae SP11-BS70]
gi|168576740|ref|ZP_02722598.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae MLV-016]
gi|225853921|ref|YP_002735433.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae JJA]
gi|307066998|ref|YP_003875964.1| hypothetical protein SPAP_0369 [Streptococcus pneumoniae AP200]
gi|419470355|ref|ZP_14010215.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA07914]
gi|419503203|ref|ZP_14042879.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47760]
gi|421313306|ref|ZP_15763900.1| hypothetical protein SPAR100_0312 [Streptococcus pneumoniae
GA47562]
gi|147757328|gb|EDK64367.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae SP11-BS70]
gi|183577563|gb|EDT98091.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae MLV-016]
gi|225722683|gb|ACO18536.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae JJA]
gi|306408535|gb|ADM83962.1| hypothetical protein SPAP_0369 [Streptococcus pneumoniae AP200]
gi|379547988|gb|EHZ13123.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA07914]
gi|379610577|gb|EHZ75308.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47760]
gi|395915277|gb|EJH26117.1| hypothetical protein SPAR100_0312 [Streptococcus pneumoniae
GA47562]
Length = 701
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|421186898|ref|ZP_15644279.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB418]
gi|399965148|gb|EJN99774.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB418]
Length = 720
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D +S L+GT Y
Sbjct: 469 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSDLTASSK--LIGTSAGYVGYND 526
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
EK+ +VL+++I+ A+PQ I ++L DG T+ G V+
Sbjct: 527 NQNTLTEKVRRNPYSIVLLDEIEKANPQIITLLLQVLDDGRLTDGQGNVV 576
>gi|118586976|ref|ZP_01544408.1| ATP-dependent Clp protease, ATP-binding subunit [Oenococcus oeni
ATCC BAA-1163]
gi|45597800|emb|CAE54288.1| ClpL ATPase [Oenococcus oeni]
gi|118432598|gb|EAV39332.1| ATP-dependent Clp protease, ATP-binding subunit [Oenococcus oeni
ATCC BAA-1163]
Length = 720
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D +S L+GT Y
Sbjct: 469 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSDLTASSK--LIGTSAGYVGYND 526
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
EK+ +VL+++I+ A+PQ I ++L DG T+ G V+
Sbjct: 527 NQNTLTEKVRRNPYSIVLLDEIEKANPQIITLLLQVLDDGRLTDGQGNVV 576
>gi|410475827|ref|YP_006742586.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
pneumoniae gamPNI0373]
gi|444386865|ref|ZP_21184892.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PCS125219]
gi|444390509|ref|ZP_21188424.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PCS70012]
gi|444393469|ref|ZP_21191117.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PCS81218]
gi|444395103|ref|ZP_21192651.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0002]
gi|444396805|ref|ZP_21194292.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0006]
gi|444398870|ref|ZP_21196346.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0007]
gi|444403765|ref|ZP_21200815.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0008]
gi|444404391|ref|ZP_21201346.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0009]
gi|444407175|ref|ZP_21203842.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0010]
gi|444418273|ref|ZP_21214261.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0360]
gi|444421097|ref|ZP_21216853.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0427]
gi|406368772|gb|AFS42462.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
pneumoniae gamPNI0373]
gi|444254616|gb|ELU61049.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PCS125219]
gi|444256972|gb|ELU63310.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PCS70012]
gi|444259072|gb|ELU65389.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0002]
gi|444259557|gb|ELU65869.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PCS81218]
gi|444262036|gb|ELU68334.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0006]
gi|444263308|gb|ELU69494.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0008]
gi|444269987|gb|ELU75784.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0007]
gi|444270771|gb|ELU76522.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0010]
gi|444276907|gb|ELU82438.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0009]
gi|444281862|gb|ELU87158.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0360]
gi|444283254|gb|ELU88455.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0427]
Length = 701
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|421239916|ref|ZP_15696469.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2080913]
gi|395610790|gb|EJG70866.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2080913]
Length = 701
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|418193027|ref|ZP_12829523.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47439]
gi|353861174|gb|EHE41113.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47439]
Length = 701
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|387625808|ref|YP_006061980.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus pneumoniae INV104]
gi|417693258|ref|ZP_12342447.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47901]
gi|444383639|ref|ZP_21181824.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PCS8106]
gi|444384917|ref|ZP_21183008.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PCS8203]
gi|301793590|emb|CBW35967.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus pneumoniae INV104]
gi|332204341|gb|EGJ18406.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47901]
gi|444248744|gb|ELU55245.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PCS8106]
gi|444251677|gb|ELU58146.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PCS8203]
Length = 701
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|418233557|ref|ZP_12860138.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA08780]
gi|421219569|ref|ZP_15676430.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2070425]
gi|421221890|ref|ZP_15678689.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2070531]
gi|421278130|ref|ZP_15728942.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA17301]
gi|421293319|ref|ZP_15744046.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae GA56113]
gi|353890141|gb|EHE69908.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA08780]
gi|395590456|gb|EJG50762.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2070531]
gi|395591068|gb|EJG51366.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2070425]
gi|395883249|gb|EJG94292.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA17301]
gi|395896373|gb|EJH07340.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae GA56113]
Length = 639
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ IGK
Sbjct: 339 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGIGK 396
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 397 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 454
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 455 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVVIATSNAGFGYE 511
>gi|354807343|ref|ZP_09040813.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
curvatus CRL 705]
gi|354514147|gb|EHE86124.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
curvatus CRL 705]
Length = 821
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 33/158 (20%)
Query: 472 KLQRSD------LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTI 520
+LQR + L KVL + V Q ++I ++ + +S K F+ G +
Sbjct: 499 QLQRKESERLMQLEKVLHKRVVGQEEAISAVSRAIRRARSGLKDPKRPIGSFMFLGPTGV 558
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL- 569
GK LA ++AE++FGS D L +DM + + S+ L+G Y EK+
Sbjct: 559 GKTELAKALAEAMFGSEDNLIRVDMSEYMERYSTSR--LVGAAPGYVGYEEGGQLTEKVR 616
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETENFGK 598
V+L ++++ A P +++L DG+ T++ G+
Sbjct: 617 NKPYSVILFDEVEKAHPDIFNILLQVLDDGYLTDSKGR 654
>gi|168490746|ref|ZP_02714889.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae CDC0288-04]
gi|418199217|ref|ZP_12835666.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47976]
gi|421231154|ref|ZP_15687804.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2080076]
gi|421267556|ref|ZP_15718431.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae SPAR95]
gi|183574894|gb|EDT95422.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae CDC0288-04]
gi|353866805|gb|EHE46701.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47976]
gi|395597351|gb|EJG57558.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2080076]
gi|395872645|gb|EJG83743.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae SPAR95]
Length = 701
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|116490637|ref|YP_810181.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni PSU-1]
gi|290890050|ref|ZP_06553133.1| hypothetical protein AWRIB429_0523 [Oenococcus oeni AWRIB429]
gi|419758636|ref|ZP_14284951.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperone
[Oenococcus oeni AWRIB304]
gi|419857005|ref|ZP_14379719.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB202]
gi|419858577|ref|ZP_14381248.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni DSM 20252 = AWRIB129]
gi|421184428|ref|ZP_15641851.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB318]
gi|421188665|ref|ZP_15646001.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB419]
gi|421193963|ref|ZP_15651203.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB553]
gi|421194224|ref|ZP_15651446.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB568]
gi|421197154|ref|ZP_15654334.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB576]
gi|116091362|gb|ABJ56516.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni PSU-1]
gi|290480241|gb|EFD88882.1| hypothetical protein AWRIB429_0523 [Oenococcus oeni AWRIB429]
gi|399904664|gb|EJN92117.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperone
[Oenococcus oeni AWRIB304]
gi|399964838|gb|EJN99472.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB419]
gi|399967142|gb|EJO01625.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB318]
gi|399970429|gb|EJO04722.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB553]
gi|399975668|gb|EJO09704.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB576]
gi|399978236|gb|EJO12192.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB568]
gi|410498525|gb|EKP89975.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni DSM 20252 = AWRIB129]
gi|410498664|gb|EKP90112.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB202]
Length = 720
Score = 45.8 bits (107), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D +S L+GT Y
Sbjct: 469 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSDLTASSK--LIGTSAGYVGYND 526
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
EK+ +VL+++I+ A+PQ I ++L DG T+ G V+
Sbjct: 527 NQNTLTEKVRRNPYSIVLLDEIEKANPQIITLLLQVLDDGRLTDGQGNVV 576
>gi|449441584|ref|XP_004138562.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101216395 [Cucumis sativus]
Length = 1123
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 121/335 (36%), Gaps = 90/335 (26%)
Query: 78 VFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGD---VPQELKQTHVIKFH--FAP 132
+ EV R + RN ++VG +S AL F +E+ + +P+EL I F+
Sbjct: 214 IGEVLGRNRGRNPLLVG--VSAYVALK-GFTNAIEKRNDNFLPEELAGVRTICLENDFSR 270
Query: 133 VTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIAS 192
+ + M E+ + V+ S G I+ GDLK V + +++
Sbjct: 271 YLSENSEMGSLNMKFVEVVQMVEQ--SPKPGLIVNFGDLKAFVGENSTDDR--------- 319
Query: 193 CYNPINHLVSEVGKLVSDCNSASSTRVWLM-ATASYQTYMKCQMRQPPLEIQWALQAVSI 251
+H+V ++ KLV +VWL+ A +SY+TY+ + P +E W L + I
Sbjct: 320 ----ASHVVGQLKKLVD----VHGDKVWLIGAASSYETYLSFVTKFPSIEKDWDLHLLPI 371
Query: 252 PSGGLGLSLHSSSVHESRLT--------FSQNPSQVWETKPFAIKEEEDHKLNCCAECTS 303
SL S S L F PS T P + + + C +C
Sbjct: 372 ------TSLRPESYPRSSLMGSFVPLGGFFSTPSDA--TIPLNVSYQHPSR---CLQCDK 420
Query: 304 NYEEEAQLFKSG---------QKKLLPPWLQPHSSSNANQKDELVE-------------- 340
+ EEE G + LP W+Q SN + D +E
Sbjct: 421 SCEEEVIAASKGVFTPPLSEQYQSSLPSWMQMTELSNFDAFDAKIEAIYLSISILFISHS 480
Query: 341 --------------------MRRKWNRSCHSLHQG 355
++KW+ C LH G
Sbjct: 481 SWCFVQTRDDGLVLSAKIAGFQKKWDNICQRLHHG 515
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 61/123 (49%), Gaps = 20/123 (16%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECK----SAKKATWFLLQGNDTIGKRRLALSIAESV 533
L+++L+E V WQ ++ I + + + + + + WF G D GK+R+ +++AE +
Sbjct: 710 LFRLLKERVFWQDQAVSIISQTISQRQRHGSNLRGDIWFNFVGPDKFGKKRVGIAVAEIM 769
Query: 534 FGSTDLLFHIDMRKRNDGVSSHS----------------EMLMGTLKNYEKLVVLVEDID 577
+G+ D +D+ ++ V+ ++ + + L+ +V++E++D
Sbjct: 770 YGNKDQFICVDLSSQDGMVNPNTPRVRSYSAEFRGKTVLDFVAAELRKQPLSIVMLENVD 829
Query: 578 LAD 580
A+
Sbjct: 830 KAE 832
>gi|448237139|ref|YP_007401197.1| ATP-dependent Clp protease ATP-binding subunit [Geobacillus sp.
GHH01]
gi|445205981|gb|AGE21446.1| ATP-dependent Clp protease ATP-binding subunit [Geobacillus sp.
GHH01]
Length = 710
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 71/145 (48%), Gaps = 29/145 (20%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAESVFGS 536
L + V Q +++ + + + ++ KA FL G +GK LA ++AE +FG+
Sbjct: 419 LAKKVIGQAEAVKKVAKAIRRSRAGLKAKHRPIGSFLFVGPTGVGKTELAKTLAEELFGT 478
Query: 537 TDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVEDIDLA 579
D L +DM ++ + HS L+G+ Y EK+ ++L+++I+ A
Sbjct: 479 KDALIRLDM---SEYMEKHSVSKLIGSPPGYVGFEEAGQLTEKVRRNPYSIILLDEIEKA 535
Query: 580 DPQ----FIKILADGFETENFGKVI 600
P F++IL DG T++ G+ +
Sbjct: 536 HPDVQHIFLQILEDGRLTDSQGRTV 560
>gi|423720794|ref|ZP_17694976.1| ATP-dependent Clp protease, ATP-binding subunit [Geobacillus
thermoglucosidans TNO-09.020]
gi|383366147|gb|EID43438.1| ATP-dependent Clp protease, ATP-binding subunit [Geobacillus
thermoglucosidans TNO-09.020]
Length = 720
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 31/172 (18%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW--- 511
E K + +G + + K++ L + L + V Q +++ + + + ++ KA
Sbjct: 399 EEKTGIPVGKLQADEKEKMKH--LEENLAKKVIGQEEAVKKVAKAIRRSRAGLKAKHRPI 456
Query: 512 --FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY-- 566
FL G +GK LA ++AE +FGS D + +DM ++ + HS L+G+ Y
Sbjct: 457 GSFLFVGPTGVGKTELAKTLAEELFGSKDAMIRLDM---SEYMEKHSVSKLIGSPPGYVG 513
Query: 567 --------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ ++L+++I+ A P F++IL DG T++ G+ +
Sbjct: 514 FEEAGQLTEKVRRNPYSIILLDEIEKAHPDVQHIFLQILEDGRLTDSQGRTV 565
>gi|336437637|ref|ZP_08617341.1| hypothetical protein HMPREF0988_02926 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336004940|gb|EGN34993.1| hypothetical protein HMPREF0988_02926 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 814
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 34/223 (15%)
Query: 401 FAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGKEVKITL 460
F E+A+ ++ KFR Q+ +K + P + + + E +
Sbjct: 438 FTEAALLQKEQEEALKKFRNQKK---------RLEKKNRSAHPEVGASEIAEVVSAWTKI 488
Query: 461 ALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVL----VECKSAKKATW-FLLQ 515
+ E SD+ +LQ+ L K L V Q +++ ++ + V K ++ FL
Sbjct: 489 PVQKLEESDAQRLQK--LEKTLHRRVIGQEEAVSAVARAVKRGRVGLKDPRRPIGSFLFL 546
Query: 516 GNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMG 561
G +GK L+ ++AE++FG D + +DM + + G H E L
Sbjct: 547 GPTGVGKTELSKALAETLFGREDSMIRVDMSEYMEKHSVAKMIGSPPGYVGHEEGGQLSD 606
Query: 562 TLKNYEKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++ + V+L ++I+ A P +++L DG T++ G+ +
Sbjct: 607 QVRTHPYSVILFDEIEKAHPDVFNILLQVLDDGHITDSQGRKV 649
>gi|253577148|ref|ZP_04854468.1| ATPase AAA-2 domain-containing protein [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251843392|gb|EES71420.1| ATPase AAA-2 domain-containing protein [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 814
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ K+L E V Q +++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 501 NMEKILHERVIGQEEAVKAVSRAIRRARAGLKDPKRPMGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEM-LMGTLKNY----------EKL------VVLVE 574
++FG + + IDM ++ + HS L+G Y EK+ VVL++
Sbjct: 561 AMFGDENAVIRIDM---SEYMEKHSTARLVGAPPGYVGYEEGGQLTEKVRRKPYSVVLLD 617
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P+ +++L DG T++ G+V+
Sbjct: 618 EIEKAHPEVFNILLQVLEDGRLTDSKGRVV 647
>gi|134298058|ref|YP_001111554.1| ATPase [Desulfotomaculum reducens MI-1]
gi|134050758|gb|ABO48729.1| ATPase AAA-2 domain protein [Desulfotomaculum reducens MI-1]
Length = 812
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 23/147 (15%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L +VL V Q D++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 505 NLEEVLHRRVVGQDDAVKAVSRAVRRARAGLKDPKRPVGSFIFLGPTGVGKTELARALAE 564
Query: 532 SVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDID 577
S+FG D L IDM + + G + E L ++ VVL+++I+
Sbjct: 565 SLFGDEDALVRIDMSEYMEKHAVSRLVGAPPGYVGYDEGGQLTEAVRRKPYSVVLLDEIE 624
Query: 578 LADPQ----FIKILADGFETENFGKVI 600
A P +++L DG T++ G+V+
Sbjct: 625 KAHPDVFNILLQVLEDGRLTDSRGRVV 651
>gi|242067163|ref|XP_002448858.1| hypothetical protein SORBIDRAFT_05g000365 [Sorghum bicolor]
gi|241934701|gb|EES07846.1| hypothetical protein SORBIDRAFT_05g000365 [Sorghum bicolor]
Length = 1050
Score = 45.8 bits (107), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 102/260 (39%), Gaps = 51/260 (19%)
Query: 131 APVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEI 190
+P + + V N T+L ++ + G G I GDLK V +
Sbjct: 242 SPYRILPVGPASVNQNQTDLL----AVATPGSGIIFSIGDLKDLVPDE------------ 285
Query: 191 ASCYNPINHLVSEVGKLVSDCNSASSTRVWLMA-TASYQTYMKCQMRQPPLEIQWALQAV 249
A + +V+EV +L+ +A VW+M +A+Y+TY+ + P ++ W LQ +
Sbjct: 286 ADLQDAARRVVAEVTRLLETHRAAGRHTVWVMGWSATYETYLAFLSKFPLVDKDWELQLL 345
Query: 250 SIPS----GGLGLSLHSSSVHESRLTFSQNPSQVWETK---PFAIKEEEDHKLNCCAE-- 300
I + + SSS + RL P+ + PF + ++ N C +
Sbjct: 346 PITAVRDARPCSRTRASSSSSKPRLLPCPMPATTSFMESFVPFGGFLCDPYEANSCPQAL 405
Query: 301 ----CTSNYEEEAQLFKSG-------QKKLLPPWLQPHSSSNAN--------QKDELV-- 339
C YE+E G + LP LQ S N + D++V
Sbjct: 406 RCQQCNDRYEQEVATIIRGSGITAEAHQDGLPSMLQNGSMMGPNNGFDVLKVRDDQMVLS 465
Query: 340 ----EMRRKWNRSCHSLHQG 355
+++KWN C LHQG
Sbjct: 466 TKIQNLKKKWNEYCLRLHQG 485
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 479 YKVLQEN----VPWQFDSIHSIVEVLVECKSA--------KKATWFLLQGNDTIGKRRLA 526
YK+L E V Q +++ +I + C+S K WF G D+I KRR+
Sbjct: 655 YKLLMERLFKAVGRQEEALSAICASIERCRSMERRRGANKKNDIWFSFYGPDSIAKRRVG 714
Query: 527 LSIAESVFGSTDLLFHIDMRKRNDGVSS-----HSEMLMGTLKNYEKLVVLVEDIDLADP 581
++AE + G ++ L ++D+ + G + ++ + L+ V+ +++ID AD
Sbjct: 715 EALAELMHGGSENLIYLDLSLHDWGNPNFRGKRATDCIAEELRKKRHSVIFLDNIDRADC 774
Query: 582 QFIKILADGFETENF 596
+ L ET +
Sbjct: 775 LVQESLIHAMETGRY 789
>gi|336236273|ref|YP_004588889.1| ATPase AAA-2 domain-containing protein [Geobacillus
thermoglucosidasius C56-YS93]
gi|335363128|gb|AEH48808.1| ATPase AAA-2 domain protein [Geobacillus thermoglucosidasius
C56-YS93]
Length = 720
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 31/172 (18%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW--- 511
E K + +G + + K++ L + L + V Q +++ + + + ++ KA
Sbjct: 399 EEKTGIPVGKLQADEKEKMKH--LEENLAKKVIGQEEAVKKVAKAIRRSRAGLKAKHRPI 456
Query: 512 --FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY-- 566
FL G +GK LA ++AE +FGS D + +DM ++ + HS L+G+ Y
Sbjct: 457 GSFLFVGPTGVGKTELAKTLAEELFGSKDAMIRLDM---SEYMEKHSVSKLIGSPPGYVG 513
Query: 567 --------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ ++L+++I+ A P F++IL DG T++ G+ +
Sbjct: 514 FEEAGQLTEKVRRNPYSIILLDEIEKAHPDVQHIFLQILEDGRLTDSQGRTV 565
>gi|239826400|ref|YP_002949024.1| ATPase AAA [Geobacillus sp. WCH70]
gi|239806693|gb|ACS23758.1| ATPase AAA-2 domain protein [Geobacillus sp. WCH70]
Length = 725
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 31/172 (18%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW--- 511
E K + +G + + K++ L + L + V Q +++ + + + ++ KA
Sbjct: 405 EEKTGIPVGKLQADEKEKMKH--LEENLAKKVIGQEEAVKKVAKAIRRSRAGLKAKHRPI 462
Query: 512 --FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY-- 566
FL G +GK LA ++AE +FGS D + +DM ++ + HS L+G+ Y
Sbjct: 463 GSFLFVGPTGVGKTELAKTLAEELFGSKDAMIRLDM---SEYMEKHSVSKLIGSPPGYVG 519
Query: 567 --------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ ++L+++I+ A P F++IL DG T++ G+ +
Sbjct: 520 HEEAGQLTEKVRRNPYSIILLDEIEKAHPDVQHIFLQILEDGRLTDSQGRTV 571
>gi|169833795|ref|YP_001693859.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae Hungary19A-6]
gi|168996297|gb|ACA36909.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae Hungary19A-6]
Length = 701
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVVIATSNAGFGYE 573
>gi|431792439|ref|YP_007219344.1| chaperone ATPase [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430782665|gb|AGA67948.1| ATPase with chaperone activity, ATP-binding subunit
[Desulfitobacterium dichloroeliminans LMG P-21439]
Length = 827
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 49/225 (21%)
Query: 469 DSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKR 523
+S +L R L L + V Q D++ ++ + ++ K F+ G +GK
Sbjct: 503 ESERLLR--LEDTLHQRVVGQEDAVKAVSRAVRRARAGLKDPKRPVGSFIFLGPTGVGKT 560
Query: 524 RLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKL 569
LA ++AE++FG D L IDM + + G H E L ++
Sbjct: 561 ELARALAEALFGEEDALVRIDMSEYMEKHAVSRLVGAPPGYIGHDEGGQLTEAIRRKPYS 620
Query: 570 VVLVEDIDLADPQ----FIKILADGFETENFGK------VIFVLT--------KGDSSNY 611
V+L+++I+ A P+ +++L DG T+ G+ + ++T K ++ +
Sbjct: 621 VILLDEIEKAHPEVFNILLQVLEDGRLTDTKGRTVDFRNAVIIMTSNVGASMMKKEAMGF 680
Query: 612 EERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDE 656
R + NM+ +V E D K+ EF N R+DE
Sbjct: 681 ANRRDETTEYKNMSARVME-----DLKKTFRPEFLN-----RVDE 715
>gi|418102056|ref|ZP_12739133.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae NP070]
gi|419432980|ref|ZP_13973102.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA40183]
gi|419474734|ref|ZP_14014576.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA14688]
gi|419485841|ref|ZP_14025608.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA44128]
gi|353777768|gb|EHD58240.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae NP070]
gi|379562241|gb|EHZ27255.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA14688]
gi|379579102|gb|EHZ44010.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA40183]
gi|379588750|gb|EHZ53590.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA44128]
Length = 701
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVVIATSNAGFGYE 573
>gi|312111885|ref|YP_003990201.1| ATPase AAA [Geobacillus sp. Y4.1MC1]
gi|311216986|gb|ADP75590.1| ATPase AAA-2 domain protein [Geobacillus sp. Y4.1MC1]
Length = 720
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 31/172 (18%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW--- 511
E K + +G + + K++ L + L + V Q +++ + + + ++ KA
Sbjct: 399 EEKTGIPVGKLQADEKEKMKH--LEENLAKKVIGQEEAVKKVAKAIRRSRAGLKAKHRPV 456
Query: 512 --FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY-- 566
FL G +GK LA ++AE +FGS D + +DM ++ + HS L+G+ Y
Sbjct: 457 GSFLFVGPTGVGKTELAKTLAEELFGSKDAMIRLDM---SEYMEKHSVSKLIGSPPGYVG 513
Query: 567 --------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ ++L+++I+ A P F++IL DG T++ G+ +
Sbjct: 514 FEEAGQLTEKVRRNPYSIILLDEIEKAHPDVQHIFLQILEDGRLTDSQGRTV 565
>gi|256852027|ref|ZP_05557414.1| ATP-dependent chaperone ClpB [Lactobacillus jensenii 27-2-CHN]
gi|260661404|ref|ZP_05862317.1| ATP-dependent chaperone ClpB [Lactobacillus jensenii 115-3-CHN]
gi|297205100|ref|ZP_06922496.1| ATPase [Lactobacillus jensenii JV-V16]
gi|256615439|gb|EEU20629.1| ATP-dependent chaperone ClpB [Lactobacillus jensenii 27-2-CHN]
gi|260547859|gb|EEX23836.1| ATP-dependent chaperone ClpB [Lactobacillus jensenii 115-3-CHN]
gi|297149678|gb|EFH29975.1| ATPase [Lactobacillus jensenii JV-V16]
Length = 827
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L L + V Q ++ ++ + + +S K FL G +GK LA ++A
Sbjct: 514 NLEATLHKRVIGQNKAVQAVAKAIKRSRSGIKDENRPIGSFLFLGPTGVGKTELAKAVAS 573
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
+VFGS + L +DM + D ++S L+G+ Y E++ VVL+++
Sbjct: 574 AVFGSENNLVRVDMSEYMDTIASSK--LIGSAPGYVGYEEGGQLSEQVRRHPYSVVLLDE 631
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DGF T++ G+ +
Sbjct: 632 VEKAHPDVFNLLLQVLDDGFLTDSKGRKV 660
>gi|297560333|ref|YP_003679307.1| ATPase AAA [Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296844781|gb|ADH66801.1| ATPase AAA-2 domain protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 830
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 76/159 (47%), Gaps = 23/159 (14%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDT 519
S+L+ + + +L +VL E V Q +++ ++ E + ++ + FL G
Sbjct: 511 SQLTQEERDRLVNLEEVLHERVIGQDEAVTAVSEAIRRSRAGLGDPDRPVGSFLFLGPTG 570
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKN 565
+GK LA ++AE++FGS D + IDM + + G + E L ++
Sbjct: 571 VGKTELARALAEALFGSEDSMVRIDMSEFQERHTASRLTGAPPGFVGYEEAGQLTEAVRR 630
Query: 566 YEKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
+ V+L+++++ A P +++L DG T+ G+ +
Sbjct: 631 HPYSVLLLDEVEKAHPDVFNLLLQLLDDGRLTDGQGRTV 669
>gi|149018031|ref|ZP_01834490.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae SP23-BS72]
gi|421208210|ref|ZP_15665235.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2070005]
gi|421224211|ref|ZP_15680957.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2070768]
gi|147931595|gb|EDK82573.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae SP23-BS72]
gi|395576680|gb|EJG37234.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2070005]
gi|395591547|gb|EJG51842.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2070768]
Length = 701
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVVIATSNAGFGYE 573
>gi|433446336|ref|ZP_20410395.1| ATP-dependent Clp protease, ATP-binding subunitClpE [Anoxybacillus
flavithermus TNO-09.006]
gi|432000632|gb|ELK21526.1| ATP-dependent Clp protease, ATP-binding subunitClpE [Anoxybacillus
flavithermus TNO-09.006]
Length = 700
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 89/188 (47%), Gaps = 31/188 (16%)
Query: 439 QGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVE 498
Q +P +D + + E K + +G + + K++ L + L + V Q +++ I +
Sbjct: 376 QAEQPVVDVIHIQQIIEEKTGIPVGKLQAEEQTKMKH--LEENLAKKVIGQEEAVRKIAK 433
Query: 499 VLVECKSAKKAT-----WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVS 553
+ ++ KA FL G +GK L+ ++AE +FGS D + +DM ++ +
Sbjct: 434 AIRRSRAGLKAKNRPIGSFLFVGPTGVGKTELSKTLAEQLFGSKDAMIRLDM---SEYME 490
Query: 554 SHS-EMLMGTLKNY----------EKL------VVLVEDIDLADP----QFIKILADGFE 592
H+ L+G Y EK+ ++L+++++ A P F++IL DG
Sbjct: 491 KHAVSKLIGAPPGYIGHEEAGQLTEKVRRNPYSIILLDEMEKAHPDVQHMFLQILEDGRL 550
Query: 593 TENFGKVI 600
T++ G+ +
Sbjct: 551 TDSQGRTV 558
>gi|421235529|ref|ZP_15692130.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2071004]
gi|395604448|gb|EJG64580.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2071004]
Length = 701
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVVIATSNAGFGYE 573
>gi|297530841|ref|YP_003672116.1| ATPase AAA [Geobacillus sp. C56-T3]
gi|297254093|gb|ADI27539.1| ATPase AAA-2 domain protein [Geobacillus sp. C56-T3]
Length = 712
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 90/191 (47%), Gaps = 34/191 (17%)
Query: 439 QGV---EPRLDSLKSNEGKEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHS 495
QGV P +D+ + K + +G + + K++ L + L + V Q +++
Sbjct: 376 QGVTQERPTVDAADIEQIIAEKTGIPVGKLQADEKEKMKH--LEENLAKKVIGQAEAVKK 433
Query: 496 IVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND 550
+ + + ++ KA FL G +GK LA ++AE +FG+ D + +DM ++
Sbjct: 434 VAKAIRRSRAGLKAKHRPIGSFLFVGPTGVGKTELAKTLAEELFGTKDAMIRLDM---SE 490
Query: 551 GVSSHS-EMLMGTLKNY----------EKL------VVLVEDIDLADPQ----FIKILAD 589
+ HS L+G+ Y EK+ ++L+++I+ A P F++IL D
Sbjct: 491 YMEKHSVSKLIGSPPGYVGFEEAGQLTEKVRRNPYSIILLDEIEKAHPDVQHIFLQILED 550
Query: 590 GFETENFGKVI 600
G T++ G+ +
Sbjct: 551 GRLTDSQGRTV 561
>gi|317126827|ref|YP_004093109.1| ATPase AAA [Bacillus cellulosilyticus DSM 2522]
gi|315471775|gb|ADU28378.1| ATPase AAA-2 domain protein [Bacillus cellulosilyticus DSM 2522]
Length = 816
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 23/146 (15%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
+ ++L V Q +++ ++ + + ++ K F+ G +GK LA ++AES
Sbjct: 506 MEEILHNRVIGQEEAVTAVSKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARAVAES 565
Query: 533 VFGSTDLLFHID----MRKRND--------GVSSHSE--MLMGTLKNYEKLVVLVEDIDL 578
+FG D + ID M K N G H E L ++ V+L+++I+
Sbjct: 566 LFGDEDAIIRIDMSEYMEKHNTSRLVGSPPGYVGHEEGGQLTEKVRRKPYSVILLDEIEK 625
Query: 579 ADPQ----FIKILADGFETENFGKVI 600
A P+ +++L DGF T++ G+ +
Sbjct: 626 AHPEVFNILLQVLEDGFLTDSKGRRV 651
>gi|111656885|ref|ZP_01407717.1| hypothetical protein SpneT_02001863 [Streptococcus pneumoniae
TIGR4]
Length = 691
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 79/179 (44%), Gaps = 36/179 (20%)
Query: 466 ELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTI 520
E SD +L+ D+ LQ+ V Q ++ + + ++ + FL G+ +
Sbjct: 389 EASDIERLK--DMAHRLQDKVIGQDKAVEVVARAIRRNRAGFDEGNRPIGNFLFVGSTGV 446
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL 569
GK LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 447 GKTELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERV 504
Query: 570 ------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 505 RRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 563
>gi|330468567|ref|YP_004406310.1| ATPase AAA-2 domain-containing protein [Verrucosispora maris
AB-18-032]
gi|328811538|gb|AEB45710.1| ATPase AAA-2 domain-containing protein [Verrucosispora maris
AB-18-032]
Length = 851
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 23/142 (16%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
L E V Q D+++++ E + ++ + FL G +GK LA ++AE++FG
Sbjct: 533 LHEKVIGQDDAVNAVAEAVRRSRTGLADPHRPMGSFLFLGPTGVGKTELARALAEALFGE 592
Query: 537 TDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADPQ 582
D + +DM + + G + E L ++ VVL+++I+ A P
Sbjct: 593 ADRMVRVDMSEFQERHTVSRLVGAPPGYVGYEEAGQLTEAVRRRPYAVVLLDEIEKAHPD 652
Query: 583 ----FIKILADGFETENFGKVI 600
+++L DG T++ G+ +
Sbjct: 653 VFNILLQVLDDGRLTDSQGRTV 674
>gi|15900269|ref|NP_344873.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
pneumoniae TIGR4]
gi|421242171|ref|ZP_15698699.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2081074]
gi|421246589|ref|ZP_15703079.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2082170]
gi|421269774|ref|ZP_15720631.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae SPAR48]
gi|14971811|gb|AAK74513.1| putative ATP-dependent Clp protease, ATP-binding subunit
[Streptococcus pneumoniae TIGR4]
gi|395611743|gb|EJG71807.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2081074]
gi|395616199|gb|EJG76212.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2082170]
gi|395870426|gb|EJG81539.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae SPAR48]
Length = 701
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 79/179 (44%), Gaps = 36/179 (20%)
Query: 466 ELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTI 520
E SD +L+ D+ LQ+ V Q ++ + + ++ + FL G+ +
Sbjct: 399 EASDIERLK--DMAHRLQDKVIGQDKAVEVVARAIRRNRAGFDEGNRPIGNFLFVGSTGV 456
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL 569
GK LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 457 GKTELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERV 514
Query: 570 ------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 515 RRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|418116089|ref|ZP_12753066.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 6963-05]
gi|353791727|gb|EHD72101.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 6963-05]
Length = 701
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+VL+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|429217740|ref|YP_007179384.1| chaperone ATPase [Deinococcus peraridilitoris DSM 19664]
gi|429128603|gb|AFZ65618.1| ATPase with chaperone activity, ATP-binding subunit [Deinococcus
peraridilitoris DSM 19664]
Length = 743
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 29/151 (19%)
Query: 476 SDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIA 530
DL L + V Q D+I ++ L + + + FL G +GK LA ++A
Sbjct: 437 GDLEDSLTDQVYGQPDAIKALSSALRRARVGLGGRTRVSASFLFVGPSGVGKTHLAKALA 496
Query: 531 ESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL----------------VVLV 573
S+FGS L IDM + + SHS L+G+ Y V+L+
Sbjct: 497 RSLFGSERALIRIDMSEFQE---SHSVSKLIGSPPGYVGYEQGGRLTEAVRRQPFSVILL 553
Query: 574 EDIDLADPQ----FIKILADGFETENFGKVI 600
++I+ A P F+++L DG T+ G+ +
Sbjct: 554 DEIEKAHPDVYNTFLQVLDDGRLTDGLGRTV 584
>gi|419766268|ref|ZP_14292475.1| ATPase, AAA family / C-terminal, D2-small domain, of ClpB
multi-domain protein [Streptococcus mitis SK579]
gi|383354230|gb|EID31803.1| ATPase, AAA family / C-terminal, D2-small domain, of ClpB
multi-domain protein [Streptococcus mitis SK579]
Length = 701
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRC 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLEDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|419448274|ref|ZP_13988272.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 4075-00]
gi|379625086|gb|EHZ89714.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 4075-00]
Length = 701
Score = 45.4 bits (106), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNNNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+VL+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|307710492|ref|ZP_07646929.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
mitis SK564]
gi|307618755|gb|EFN97894.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
mitis SK564]
Length = 701
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+VL+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|402831729|ref|ZP_10880406.1| putative negative regulator of genetic competence ClpC/MecB
[Capnocytophaga sp. CM59]
gi|402281116|gb|EJU29808.1| putative negative regulator of genetic competence ClpC/MecB
[Capnocytophaga sp. CM59]
Length = 853
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 31/168 (18%)
Query: 466 ELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTI 520
E S+ KL S L K++Q+ V Q +++ IV+ + ++ K F+ G +
Sbjct: 525 EQSEMTKL--SSLEKIIQQKVIGQEEAVQKIVKAIKRNRTGLKDPNRPIGSFIFIGQTGV 582
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNY 566
GK +LA +A +F S D L +DM + + G H E L ++
Sbjct: 583 GKTQLAKILARELFDSEDALIRLDMSEYMEKFTVSRLIGAPPGYVGHEEGGQLTERVRRK 642
Query: 567 EKLVVLVEDIDLADP----QFIKILADGFETE------NFGKVIFVLT 604
VVL+++I+ A P +++L DGF T+ +F I ++T
Sbjct: 643 PYSVVLLDEIEKAHPDIFNMLLQVLDDGFLTDSLNRKVDFRNTIIIMT 690
>gi|417849800|ref|ZP_12495717.1| ATPase, AAA family [Streptococcus mitis SK1080]
gi|339455727|gb|EGP68328.1| ATPase, AAA family [Streptococcus mitis SK1080]
Length = 700
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 400 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 457
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 458 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNNNTLTERVRR 515
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+VL+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 516 NPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 572
>gi|374603227|ref|ZP_09676209.1| Negative regulator of genetic competence clpC/mecB [Paenibacillus
dendritiformis C454]
gi|374391096|gb|EHQ62436.1| Negative regulator of genetic competence clpC/mecB [Paenibacillus
dendritiformis C454]
Length = 812
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 74/150 (49%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ +VL E V Q +++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 501 NMEEVLHERVIGQDEAVKAVSRAIRRARAGLKDPKRPMGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEM-LMGTLKNY----------EKL------VVLVE 574
S+FG + + IDM ++ + HS L+G Y EK+ VVL++
Sbjct: 561 SLFGDENAVIRIDM---SEYMEKHSTARLVGAPPGYVGYEEGGQLTEKVRRKPYSVVLLD 617
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P+ +++L DG T++ G+V+
Sbjct: 618 EIEKAHPEVFNILLQVLEDGRLTDSKGRVV 647
>gi|89893184|ref|YP_516671.1| hypothetical protein DSY0438 [Desulfitobacterium hafniense Y51]
gi|219666457|ref|YP_002456892.1| ATPase AAA [Desulfitobacterium hafniense DCB-2]
gi|423073164|ref|ZP_17061907.1| negative regulator of genetic competence ClpC/MecB
[Desulfitobacterium hafniense DP7]
gi|89332632|dbj|BAE82227.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219536717|gb|ACL18456.1| ATPase AAA-2 domain protein [Desulfitobacterium hafniense DCB-2]
gi|361855994|gb|EHL07928.1| negative regulator of genetic competence ClpC/MecB
[Desulfitobacterium hafniense DP7]
Length = 826
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 23/146 (15%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L + L + V Q D++ ++ + ++ K F+ G +GK LA ++AE+
Sbjct: 510 LEETLHQRVVGQEDAVKAVSRAVRRARAGLKDPKRPVGSFIFLGPTGVGKTELARALAEA 569
Query: 533 VFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDL 578
+FG D L IDM + + G H E L ++ V+L+++I+
Sbjct: 570 LFGEEDALIRIDMSEYMEKHAVSRLVGAPPGYIGHDEGGQLTEAIRRKPYSVILLDEIEK 629
Query: 579 ADPQ----FIKILADGFETENFGKVI 600
A P+ +++L DG T+ G+ +
Sbjct: 630 AHPEVFNILLQVLEDGRLTDTKGRTV 655
>gi|418088735|ref|ZP_12725896.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA43265]
gi|353764476|gb|EHD45025.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA43265]
Length = 701
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+VL+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|345021357|ref|ZP_08784970.1| ATP-dependent Clp protease [Ornithinibacillus scapharcae TW25]
Length = 808
Score = 45.4 bits (106), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 75/150 (50%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L +VL + V Q +++ +I + + ++ K F+ G +GK LA ++AE
Sbjct: 503 NLEEVLHDRVIGQEEAVKAISKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 562
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
++F D + IDM ++ + HS L+G+ Y EK+ VVL++
Sbjct: 563 AMFADEDAMIRIDM---SEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLD 619
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P+ +++L DG T++ G+V+
Sbjct: 620 EIEKAHPEVFNILLQVLEDGRLTDSKGRVV 649
>gi|56419503|ref|YP_146821.1| ATP-dependent Clp protease [Geobacillus kaustophilus HTA426]
gi|56379345|dbj|BAD75253.1| ATP-dependent Clp protease [Geobacillus kaustophilus HTA426]
Length = 645
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 29/145 (20%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAESVFGS 536
L + V Q +++ + + + ++ KA FL G +GK LA ++AE +FG+
Sbjct: 420 LAKKVIGQAEAVKKVAKAIRRSRAGLKAKHRPIGSFLFVGPTGVGKTELAKTLAEELFGT 479
Query: 537 TDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVEDIDLA 579
D + +DM ++ + HS L+G+ Y EK+ ++L+++I+ A
Sbjct: 480 KDAMIRLDM---SEYMEKHSVSKLIGSPPGYVGFEEAGQLTEKVRRNPYTIILLDEIEKA 536
Query: 580 DPQ----FIKILADGFETENFGKVI 600
P F++IL DG T++ G+ +
Sbjct: 537 HPDVQHIFLQILEDGRLTDSQGRTV 561
>gi|392958574|ref|ZP_10324083.1| Class III stress response-related ATPase, ClpC [Bacillus macauensis
ZFHKF-1]
gi|391875475|gb|EIT84086.1| Class III stress response-related ATPase, ClpC [Bacillus macauensis
ZFHKF-1]
Length = 810
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 68/146 (46%), Gaps = 23/146 (15%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L ++L V Q +++ SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEEILHNRVIGQDEAVQSISKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARAVAES 561
Query: 533 VFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDL 578
+FG D + IDM + + G H E L ++ V+L+++I+
Sbjct: 562 LFGDEDAIIRIDMSEYMEKHTTSRLVGSPPGYVGHEEGGQLTEKVRRKPYSVILLDEIEK 621
Query: 579 ADPQ----FIKILADGFETENFGKVI 600
A P+ +++L DG T++ G+ +
Sbjct: 622 AHPEVFNILLQVLEDGRLTDSKGRTV 647
>gi|295693816|ref|YP_003602426.1| ATP-dependent clp protease, ATP-binding subunit [Lactobacillus
crispatus ST1]
gi|295031922|emb|CBL51401.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
crispatus ST1]
Length = 708
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 26/160 (16%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK----SAKKATWFLLQGNDTI 520
SEL + DL K L++NV Q +I I + + + S + FLL G +
Sbjct: 380 SELHADEAQKNLDLAKKLKKNVIDQDRAIDVITDAIARKQIFKDSDRPTGSFLLTGPTGV 439
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL- 569
GK LA +A +FG+ + L +DM + D ++ + L+G+ Y EK+
Sbjct: 440 GKTELAKQLAIQLFGNKEHLIRLDMSEYQDEMAVNK--LIGSAPGYVGYGEGGQLTEKVR 497
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++L ++I+ A+PQ ++I+ DG T+ G+ +
Sbjct: 498 HQPYSLILFDEIEKANPQVFNALLQIMDDGRLTDAQGRTV 537
>gi|56961903|ref|YP_173625.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Bacillus
clausii KSM-K16]
gi|56908137|dbj|BAD62664.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Bacillus
clausii KSM-K16]
Length = 818
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
+ ++L E V Q +++ SI + + ++ K F+ G +GK LA ++AE+
Sbjct: 508 MEEILHERVVGQEEAVKSISKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARAVAET 567
Query: 533 VFGSTDLLFHIDMRKRNDGVSSH-SEMLMGTLKNY----------EKL------VVLVED 575
+FG D + IDM ++ + H + L+G+ Y EK+ V+L+++
Sbjct: 568 LFGDEDAVIRIDM---SEYMEKHATSRLVGSPPGYVGHEEGGQLTEKIRRKPYSVILLDE 624
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T++ G+ +
Sbjct: 625 IEKAHPDVFNLLLQVLEDGRLTDSKGRTV 653
>gi|373468461|ref|ZP_09559713.1| negative regulator of genetic competence ClpC/MecB [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
gi|371766197|gb|EHO54464.1| negative regulator of genetic competence ClpC/MecB [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
Length = 831
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 31/159 (19%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVL----VECKSAKKATW-FLLQGNDTIGK 522
+DS +L S+L KVL E V Q +++ ++ + V K K+ FL G +GK
Sbjct: 499 NDSQRL--SNLEKVLHERVVGQQEAVSAVARAIRRGRVGLKDPKRPIGSFLFLGPTGVGK 556
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL-- 569
L+ ++A S+FGS + L +DM ++ + HS ++G+ Y EK+
Sbjct: 557 TELSKALAYSMFGSENALIRVDM---SEYMEKHSVSKMVGSPPGYVGYEEGGQLSEKVRR 613
Query: 570 ----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
V+L ++I+ A P +++L DG T++ G++I
Sbjct: 614 NPYSVILFDEIEKAHPDVFNILLQVLDDGHITDSSGRMI 652
>gi|77411174|ref|ZP_00787526.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
agalactiae CJB111]
gi|77162792|gb|EAO73751.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
agalactiae CJB111]
Length = 625
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 26/165 (15%)
Query: 460 LALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLL 514
+ + N SD +L+ +L L+ V Q D++ ++ + ++ + FL
Sbjct: 318 VPVSNMGASDIERLK--ELGNRLKGKVIGQNDAVEAVARAIRRNRAGFDDGNRPIGSFLF 375
Query: 515 QGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND---------------GVSSHSEML 559
G +GK LA +A +FGS D + +DM + ND G +S L
Sbjct: 376 VGPTGVGKTELAKQLAFDMFGSKDAIVRLDMSEYNDRTAVSKLIGATAGYVGYDDNSNTL 435
Query: 560 MGTLKNYEKLVVLVEDIDLADPQFI----KILADGFETENFGKVI 600
++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 436 TERIRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 480
>gi|386712438|ref|YP_006178760.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Halobacillus
halophilus DSM 2266]
gi|384071993|emb|CCG43483.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Halobacillus
halophilus DSM 2266]
Length = 819
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L V Q +++ SI + + ++ K F+ G +GK LA ++AES
Sbjct: 509 LEDTLHNRVIGQDEAVKSISKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 568
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + IDM ++ + HS L+G+ Y EK+ VVL+++
Sbjct: 569 MFGEEDAMIRIDM---SEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRNKPYSVVLLDE 625
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P+ +++L DG T++ G+V+
Sbjct: 626 VEKAHPEVFNILLQVLEDGRLTDSKGRVV 654
>gi|256843911|ref|ZP_05549398.1| ATP-dependent protease [Lactobacillus crispatus 125-2-CHN]
gi|293381389|ref|ZP_06627390.1| putative chaperone protein ClpB [Lactobacillus crispatus 214-1]
gi|256613816|gb|EEU19018.1| ATP-dependent protease [Lactobacillus crispatus 125-2-CHN]
gi|290922079|gb|EFD99080.1| putative chaperone protein ClpB [Lactobacillus crispatus 214-1]
Length = 708
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 26/160 (16%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK----SAKKATWFLLQGNDTI 520
SEL + DL K L++NV Q +I I + + + S + FLL G +
Sbjct: 380 SELHADEAQKNLDLAKKLKKNVIDQDRAIDVITDAIARKQIFKDSDRPTGSFLLTGPTGV 439
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL- 569
GK LA +A +FG+ + L +DM + D ++ + L+G+ Y EK+
Sbjct: 440 GKTELAKQLAIQLFGNKEHLIRLDMSEYQDEMAVNK--LIGSAPGYVGYGEGGQLTEKVR 497
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++L ++I+ A+PQ ++I+ DG T+ G+ +
Sbjct: 498 HQPYSLILFDEIEKANPQVFNALLQIMDDGRLTDAQGRTV 537
>gi|406947402|gb|EKD78332.1| ATP-dependent Clp protease regulatory subunit, partial [uncultured
bacterium]
Length = 839
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECK-----SAKKATWFLLQGNDTIGKRRLALSIAES 532
L + L E V Q +++ +I L + + + FL G +GK A +IAE+
Sbjct: 550 LDQTLHERVIGQDEAVTAIARALRRSREDVRDTTRPIASFLFMGPTGVGKTETAKAIAET 609
Query: 533 VFGSTDLLFHIDMRKRND--GVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQ----FIKI 586
FG++D + +DM + D + +L ++ +VL+++ + A P+ F+++
Sbjct: 610 YFGASDRMIRLDMSEYQDANALEKLFVLLPEAIRQMPFAIVLLDEFEKASPEVHNVFLQV 669
Query: 587 LADGFETENFGK 598
L DG T++ G+
Sbjct: 670 LDDGRLTDSQGR 681
>gi|77414072|ref|ZP_00790241.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
agalactiae 515]
gi|77159870|gb|EAO71012.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
agalactiae 515]
Length = 567
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 24/143 (16%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
L+ V Q D++ ++ + ++ + FL G +GK LA +A +FGS
Sbjct: 280 LKGKVIGQNDAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLAFDMFGS 339
Query: 537 TDLLFHIDMRKRND---------------GVSSHSEMLMGTLKNYEKLVVLVEDIDLADP 581
D + +DM + ND G +S L ++ +VL+++I+ ADP
Sbjct: 340 KDAIVRLDMSEYNDRTAVSKLIGATAGYVGYDDNSNTLTERIRRNPYSIVLLDEIEKADP 399
Query: 582 QFI----KILADGFETENFGKVI 600
Q I ++L DG T+ G I
Sbjct: 400 QVITLLLQVLDDGRLTDGQGNTI 422
>gi|58338154|ref|YP_194739.1| ATP-dependent protease [Lactobacillus acidophilus NCFM]
gi|58255471|gb|AAV43708.1| ATP-dependent protease [Lactobacillus acidophilus NCFM]
Length = 709
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 26/160 (16%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK----SAKKATWFLLQGNDTI 520
SEL + DL K L++NV Q +I I + + + S + FLL G +
Sbjct: 381 SELHADEAQKNLDLAKKLKKNVIDQDRAIDVITDAIARKQIFKDSDRPTGSFLLTGPTGV 440
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL- 569
GK LA +A +FG+ + L +DM + D ++ + L+G+ Y EK+
Sbjct: 441 GKTELAKQLAIQLFGNKEHLIRLDMSEYQDEMAVNK--LIGSAPGYVGYGEGGQLTEKVR 498
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++L ++I+ A+PQ ++I+ DG T+ G+ +
Sbjct: 499 HQPYSLILFDEIEKANPQVFNALLQIMDDGRLTDAQGRTV 538
>gi|322377101|ref|ZP_08051593.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sp. M334]
gi|321281814|gb|EFX58822.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sp. M334]
Length = 701
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|383780572|ref|YP_005465138.1| putative ATPase associated with various cellular activities
[Actinoplanes missouriensis 431]
gi|381373804|dbj|BAL90622.1| putative ATPase associated with various cellular activities
[Actinoplanes missouriensis 431]
Length = 867
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 76/159 (47%), Gaps = 23/159 (14%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDT 519
++L+++ + + L + L E+V Q D++ ++ E + ++ + FL G
Sbjct: 542 AQLTEAERDRLLRLEQHLHEHVIGQEDAVEAVAEAVRRSRAGLGDEDRPVGSFLFLGPTG 601
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKN 565
+GK LA S+AE++FG D + +DM + + G + E L ++
Sbjct: 602 VGKTELARSLAEALFGEPDRMIRLDMSEFQERHTVSRLVGAPPGYVGYDEAGQLTEAVRR 661
Query: 566 YEKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
VVL+++I+ A P +++L DG T++ G+ +
Sbjct: 662 RPYSVVLLDEIEKAHPDVFNILLQVLDDGRLTDSQGRTV 700
Score = 40.4 bits (93), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 63/152 (41%), Gaps = 7/152 (4%)
Query: 25 QCYTSSGGGVFSS-PCSPSSSEAHHFINPNTFWQNHALFSSQKPASVSKEDIKLVFEVFL 83
+ + +GGG P +P++ F A P ++I+ E+
Sbjct: 195 EAASGTGGGSHQPHPSNPNTPTLEQF---GVDLTESARRGEIDPVVGRADEIEQAVEILS 251
Query: 84 RKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEV 143
R+ + N V++G+ A+V R+ GDVP L+ VI+ A + + +
Sbjct: 252 RRTKNNPVLIGEAGVGKTAIVEGLAQRIVDGDVPLTLQDKRVIQLDLAGLVAGTRYRGDF 311
Query: 144 EMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
E L++ ++ + S G G I++ ++ V
Sbjct: 312 E---ERLRKVIEEIQSSGDGLIVFLDEIHTLV 340
>gi|225858192|ref|YP_002739702.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae 70585]
gi|225720326|gb|ACO16180.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae 70585]
Length = 701
Score = 45.1 bits (105), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGATGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|319766006|ref|YP_004131507.1| ATPase AAA [Geobacillus sp. Y412MC52]
gi|317110872|gb|ADU93364.1| ATPase AAA-2 domain protein [Geobacillus sp. Y412MC52]
Length = 712
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 29/145 (20%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAESVFGS 536
L + V Q +++ + + + ++ KA FL G +GK LA ++AE +FG+
Sbjct: 420 LAKKVIGQAEAVKKVAKAIRRSRAGLKAKHRPIGSFLFVGPTGVGKTELAKTLAEELFGT 479
Query: 537 TDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVEDIDLA 579
D + +DM ++ + HS L+G+ Y EK+ ++L+++I+ A
Sbjct: 480 KDAMIRLDM---SEYMEKHSVSKLIGSPPGYVGFEEAGQLTEKVRRNPYSIILLDEIEKA 536
Query: 580 DPQ----FIKILADGFETENFGKVI 600
P F++IL DG T++ G+ +
Sbjct: 537 HPDVQHIFLQILEDGRLTDSQGRTV 561
>gi|227878455|ref|ZP_03996395.1| ATP-dependent protease [Lactobacillus crispatus JV-V01]
gi|256849526|ref|ZP_05554958.1| ATP-dependent protease [Lactobacillus crispatus MV-1A-US]
gi|262046194|ref|ZP_06019157.1| ATP-dependent protease [Lactobacillus crispatus MV-3A-US]
gi|423320067|ref|ZP_17297942.1| hypothetical protein HMPREF9250_02375 [Lactobacillus crispatus
FB049-03]
gi|423322163|ref|ZP_17300033.1| hypothetical protein HMPREF9249_02033 [Lactobacillus crispatus
FB077-07]
gi|227861984|gb|EEJ69563.1| ATP-dependent protease [Lactobacillus crispatus JV-V01]
gi|256713642|gb|EEU28631.1| ATP-dependent protease [Lactobacillus crispatus MV-1A-US]
gi|260573524|gb|EEX30081.1| ATP-dependent protease [Lactobacillus crispatus MV-3A-US]
gi|405585879|gb|EKB59678.1| hypothetical protein HMPREF9250_02375 [Lactobacillus crispatus
FB049-03]
gi|405589434|gb|EKB63000.1| hypothetical protein HMPREF9249_02033 [Lactobacillus crispatus
FB077-07]
Length = 633
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 26/160 (16%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK----SAKKATWFLLQGNDTI 520
SEL + DL K L++NV Q +I I + + + S + FLL G +
Sbjct: 380 SELHADEAQKNLDLAKKLKKNVIDQDRAIDVITDAIARKQIFKDSDRPTGSFLLTGPTGV 439
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL- 569
GK LA +A +FG+ + L +DM + D ++ + L+G+ Y EK+
Sbjct: 440 GKTELAKQLAIQLFGNKEHLIRLDMSEYQDEMAVNK--LIGSAPGYVGYGEGGQLTEKVR 497
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++L ++I+ A+PQ ++I+ DG T+ G+ +
Sbjct: 498 HQPYSLILFDEIEKANPQVFNALLQIMDDGRLTDAQGRTV 537
>gi|313885300|ref|ZP_07819051.1| ATP-dependent chaperone protein ClpB [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619406|gb|EFR30844.1| ATP-dependent chaperone protein ClpB [Eremococcus coleocola
ACS-139-V-Col8]
Length = 869
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 23/159 (14%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDT 519
S+L + + + +L KVL + V Q +I + E ++ ++ +K FL G
Sbjct: 552 SKLVEGERTKLLNLDKVLAQRVIGQDQAIERVTEAVLRSRAGIQDPSKPIGSFLFLGPTG 611
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKN 565
+GK LA ++A+ +F S D + IDM + + G H E L ++
Sbjct: 612 VGKTELAKALAQQLFDSEDHMIRIDMSEYMEKHTVSRLVGAPPGYIGHEEGGQLTEAVRR 671
Query: 566 YEKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
+VL+++I+ A P +++L DG T++ G+ +
Sbjct: 672 NPYTIVLLDEIEKAHPDVFNILLQVLDDGRLTDSMGRTV 710
>gi|224475673|ref|YP_002633279.1| ClpC ATPase family protein [Staphylococcus carnosus subsp. carnosus
TM300]
gi|222420280|emb|CAL27094.1| ClpC ATPase family protein [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 821
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 44/175 (25%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L L E V Q D++ SI + + ++ K F+ G +GK LA ++AE
Sbjct: 501 NLEDTLHERVIGQKDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
S+FG D + +DM ++ + H+ L+G Y EK+ V+L +
Sbjct: 561 SMFGDEDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFD 617
Query: 575 DIDLADPQ----FIKILADGFETENFGKVIFVLTKGDSSNYEERIENQDSVINMT 625
+I+ A P +++L DGF T+ G+ R++ +++VI MT
Sbjct: 618 EIEKAHPDVFNILLQVLDDGFLTDTKGR---------------RVDFRNTVIVMT 657
>gi|418967194|ref|ZP_13518868.1| ATPase, AAA family, partial [Streptococcus mitis SK616]
gi|383345030|gb|EID23173.1| ATPase, AAA family, partial [Streptococcus mitis SK616]
Length = 701
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|386843476|ref|YP_006248534.1| clp protease ATP binding subunit [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374103777|gb|AEY92661.1| clp protease ATP binding subunit [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451796767|gb|AGF66816.1| clp protease ATP binding subunit [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 847
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 86/186 (46%), Gaps = 34/186 (18%)
Query: 449 KSNEGKEVKITL-----------ALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIV 497
K++EG+++++T + S L+ K + L + L + V Q +++ +
Sbjct: 493 KADEGQDLEVTAEAIAEVVSRQTGIPVSRLTQEEKERLLGLERHLHQRVVGQEEAVAVVS 552
Query: 498 EVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND-- 550
E ++ ++ + FL G +GK LA ++AE++FGS D + +DM + +
Sbjct: 553 EAVLRSRAGLSSPNRPIGSFLFLGPTGVGKTELARALAEALFGSEDRMVRLDMSEYQERH 612
Query: 551 ----------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADPQ----FIKILADGFETE 594
G H E L ++ + ++L+++++ A P +++L DG T+
Sbjct: 613 TVSRLVGAPPGYVGHEEAGQLTEVVRRHPYSLLLLDEVEKAHPDVFNILLQVLDDGRLTD 672
Query: 595 NFGKVI 600
+ G+ +
Sbjct: 673 SQGRTV 678
>gi|227902665|ref|ZP_04020470.1| ATP-dependent protease [Lactobacillus acidophilus ATCC 4796]
gi|227869571|gb|EEJ76992.1| ATP-dependent protease [Lactobacillus acidophilus ATCC 4796]
Length = 710
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 26/160 (16%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK----SAKKATWFLLQGNDTI 520
SEL + DL K L++NV Q +I I + + + S + FLL G +
Sbjct: 381 SELHADEAQKNLDLAKKLKKNVIDQDRAIDVITDAIARKQIFKDSDRPTGSFLLTGPTGV 440
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL- 569
GK LA +A +FG+ + L +DM + D ++ + L+G+ Y EK+
Sbjct: 441 GKTELAKQLAIQLFGNKEHLIRLDMSEYQDEMAVNK--LIGSAPGYVGYGEGGQLTEKVR 498
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++L ++I+ A+PQ ++I+ DG T+ G+ +
Sbjct: 499 HQPYSLILFDEIEKANPQVFNALLQIMDDGRLTDAQGRTV 538
>gi|363888813|ref|ZP_09316191.1| hypothetical protein HMPREF9628_00101 [Eubacteriaceae bacterium
CM5]
gi|361967434|gb|EHL20256.1| hypothetical protein HMPREF9628_00101 [Eubacteriaceae bacterium
CM5]
Length = 843
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 83/160 (51%), Gaps = 28/160 (17%)
Query: 466 ELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA----KKATWFLLQGNDTIG 521
EL+ ++ +L K LQ++V Q ++I ++ + + ++ KK + F+ G +G
Sbjct: 534 ELTVEESIKLMNLEKNLQKSVIGQDEAISTVSKSIRRNRAGISPVKKPSSFIFVGPTGVG 593
Query: 522 KRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL- 569
K +L S+A+ +FGS D++ IDM ++ + HS +G+ Y +K+
Sbjct: 594 KTQLVKSLAKEMFGSEDMIIRIDM---SEYMEKHSVSKFIGSPPGYVGFDEGGQLTDKVR 650
Query: 570 -----VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
++L+++I+ A P ++IL DG T++ G+V+
Sbjct: 651 RKPYSIILLDEIEKAHPDVFNMLLQILDDGRLTDSQGRVV 690
>gi|261419190|ref|YP_003252872.1| ATPase AAA [Geobacillus sp. Y412MC61]
gi|261375647|gb|ACX78390.1| ATPase AAA-2 domain protein [Geobacillus sp. Y412MC61]
Length = 712
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 29/145 (20%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAESVFGS 536
L + V Q +++ + + + ++ KA FL G +GK LA ++AE +FG+
Sbjct: 420 LAKKVIGQAEAVKKVAKAIRRSRAGLKAKHRPIGSFLFVGPTGVGKTELAKTLAEELFGT 479
Query: 537 TDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVEDIDLA 579
D + +DM ++ + HS L+G+ Y EK+ ++L+++I+ A
Sbjct: 480 KDAMIRLDM---SEYMEKHSVSKLIGSPPGYVGFEEAGQLTEKVRRNPYSIILLDEIEKA 536
Query: 580 DPQ----FIKILADGFETENFGKVI 600
P F++IL DG T++ G+ +
Sbjct: 537 HPDVQHIFLQILEDGRLTDSQGRTV 561
>gi|298246165|ref|ZP_06969971.1| ATP-dependent chaperone ClpB [Ktedonobacter racemifer DSM 44963]
gi|297553646|gb|EFH87511.1| ATP-dependent chaperone ClpB [Ktedonobacter racemifer DSM 44963]
Length = 864
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 68/160 (42%), Gaps = 10/160 (6%)
Query: 19 SASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHALFSSQ---KPASVSKEDI 75
S SV Q TS G + +P + + +N + + P E+I
Sbjct: 131 SRDSVLQALTSIRGAQRVTDQNPEGK----YQALEKYGRNLTAAAREGKLDPVIGRDEEI 186
Query: 76 KLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTL 135
+ V +V R+ + N V++G+ A+V R+ RGDVP+ L+ V+ + +
Sbjct: 187 RRVIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVRGDVPKTLENKQVVTLDLSALVA 246
Query: 136 RFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
+ E E L + ++V TS GG I++ +L V
Sbjct: 247 GAKFRGEFEERLKAVLKEV---TSAQGGIILFIDELHTLV 283
>gi|419501119|ref|ZP_14040806.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47628]
gi|379603364|gb|EHZ68133.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47628]
Length = 701
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|374338101|ref|YP_005094811.1| putative ATP-dependent Clp proteinase (ATP-binding subunit)
[Streptococcus macedonicus ACA-DC 198]
gi|372284211|emb|CCF02469.1| putative ATP-dependent Clp proteinase (ATP-binding subunit)
[Streptococcus macedonicus ACA-DC 198]
Length = 702
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 30/167 (17%)
Query: 460 LALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLL 514
+ + N SD +L+ DL L+ V Q +++ + + ++ + FL
Sbjct: 395 IPVSNMGASDIERLK--DLASRLKSKVIGQDEAVEVVARAIRRNRAGFDEGNRPIGSFLF 452
Query: 515 QGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-------- 566
G +GK LA +A +FGS D + +DM + +D + L+GT Y
Sbjct: 453 VGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSD--RTAVSKLIGTTAGYVGYDDNSN 510
Query: 567 ---EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 511 TLTERIRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 557
>gi|159037904|ref|YP_001537157.1| ATPase [Salinispora arenicola CNS-205]
gi|157916739|gb|ABV98166.1| ATPase AAA-2 domain protein [Salinispora arenicola CNS-205]
Length = 848
Score = 45.1 bits (105), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 23/142 (16%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
L E V Q D+++++ E + ++ + FL G +GK LA ++AE++FG
Sbjct: 533 LHEKVVGQDDAVNAVAEAVRRSRTGLADPERPMGSFLFLGPTGVGKTELARALAEALFGE 592
Query: 537 TDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADPQ 582
D + +DM + + G + E L ++ VVL+++I+ A P
Sbjct: 593 ADRMVRVDMSEFQERHTVSRLVGAPPGYVGYEEAGQLTEAVRRRPYAVVLLDEIEKAHPD 652
Query: 583 ----FIKILADGFETENFGKVI 600
+++L DG T++ G+ +
Sbjct: 653 VFNILLQVLDDGRLTDSQGRTV 674
>gi|418084451|ref|ZP_12721639.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47281]
gi|418149934|ref|ZP_12786690.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA14798]
gi|353760754|gb|EHD41330.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47281]
gi|353818076|gb|EHD98276.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA14798]
Length = 701
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|395243261|ref|ZP_10420248.1| ATP-dependent Clp protease [Lactobacillus hominis CRBIP 24.179]
gi|394484491|emb|CCI81256.1| ATP-dependent Clp protease [Lactobacillus hominis CRBIP 24.179]
Length = 824
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 115/268 (42%), Gaps = 46/268 (17%)
Query: 476 SDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIA 530
++L +L E V Q +I ++ + +S K FL G +GK LA ++A
Sbjct: 508 ANLEAILHERVIGQNKAISAVSRAIRRSRSGIKDENRPIGSFLFLGPTGVGKTELAKALA 567
Query: 531 ESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVE 574
++VFGS + +DM + D +++ L+G+ Y E++ V+L++
Sbjct: 568 DAVFGSEKNIIRVDMSEYMDQIATSK--LIGSAPGYVGYEEGGQLSERVRRNPYSVILLD 625
Query: 575 DIDLADPQ----FIKILADGFETENFGK------VIFVLTKGDSSNYEERIENQDSVINM 624
+++ A P +++L +GF T++ G+ I ++T SN R +D +
Sbjct: 626 EVEKAHPDVFNLLLQVLDEGFLTDSKGRKVDFRNTIIIMT----SNLGSRSIQEDKTVGF 681
Query: 625 TLKVNERNQ-NFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFN 683
+ NQ D A +F RIDE V+ D++ NKK + +
Sbjct: 682 AADNADLNQVKKDKIEAATKQFFRPEFLNRIDE-----VVSFDSL---NKKQLRQIVTLL 733
Query: 684 TLDLNMKADDEDDEGEQKPGELSPISSD 711
T L + ++D + P L ++ D
Sbjct: 734 THRLVTRLKNQDVTLKISPAALDVLAKD 761
>gi|419494670|ref|ZP_14034390.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47461]
gi|421302189|ref|ZP_15752854.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae GA17484]
gi|379597034|gb|EHZ61837.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47461]
gi|395903003|gb|EJH13935.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae GA17484]
Length = 701
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|418215802|ref|ZP_12842527.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae Netherlands15B-37]
gi|353874180|gb|EHE54037.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae Netherlands15B-37]
Length = 701
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQNKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|418113923|ref|ZP_12750916.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 5787-06]
gi|353788587|gb|EHD68984.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 5787-06]
Length = 701
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|395241911|ref|ZP_10418911.1| ATPase [Lactobacillus pasteurii CRBIP 24.76]
gi|394480659|emb|CCI85151.1| ATPase [Lactobacillus pasteurii CRBIP 24.76]
Length = 832
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 73/150 (48%), Gaps = 27/150 (18%)
Query: 476 SDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIA 530
+ L ++L + V Q ++ ++ + + +S K FL G +GK LA ++A
Sbjct: 515 AQLEEILHQRVIGQSKAVSAVAKAIRRSRSGIKDERRPIGSFLFLGPTGVGKTELAKAVA 574
Query: 531 ESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVE 574
+VFGS + IDM + D ++S L+G+ Y E++ V+L++
Sbjct: 575 HAVFGSDANMIRIDMSEYMDSIASSK--LIGSAPGYVGYEEGGQLSEQVRRHPYSVILLD 632
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+++ A P +++L +GF T++ G+ +
Sbjct: 633 EVEKAHPDVFNLLLQVLDEGFLTDSKGRKV 662
>gi|253754969|ref|YP_003028109.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus suis
BM407]
gi|251817433|emb|CAZ55173.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus suis BM407]
Length = 699
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 38/186 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ +L L NV Q D++ ++ + ++ FL G +GK
Sbjct: 399 SDIERLK--ELKNRLAANVIGQDDAVEAVSRAIRRNRAGFDDGNHPIGSFLFVGPTGVGK 456
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 457 TELAKQLALDLFGNKDAIIRLDMSEYSDRTAVSK--LIGTTAGYIGYDDNSHTLTERVRR 514
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNY--EE 613
+VL+++I+ ADPQ I ++L DG T+ NF I + T Y E
Sbjct: 515 NPYSIVLMDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTIIIATSNAGFGYGMAE 574
Query: 614 RIENQD 619
ENQD
Sbjct: 575 GEENQD 580
>gi|145594688|ref|YP_001158985.1| ATPase [Salinispora tropica CNB-440]
gi|145304025|gb|ABP54607.1| ATPase AAA-2 domain protein [Salinispora tropica CNB-440]
Length = 848
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 23/142 (16%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
L E V Q D+++++ E + ++ + FL G +GK LA ++AE++FG
Sbjct: 533 LHEKVVGQDDAVNAVAEAVRRSRTGLADPDRPMGSFLFLGPTGVGKTELARALAEALFGE 592
Query: 537 TDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADPQ 582
D + +DM + + G + E L ++ VVL+++I+ A P
Sbjct: 593 ADRMVRVDMSEFQERHTVSRLVGAPPGYVGYEEAGQLTEAVRRRPYAVVLLDEIEKAHPD 652
Query: 583 ----FIKILADGFETENFGKVI 600
+++L DG T++ G+ +
Sbjct: 653 VFNILLQVLDDGRLTDSQGRTV 674
>gi|419439572|ref|ZP_13979629.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA40410]
gi|379582057|gb|EHZ46940.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA40410]
Length = 691
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 391 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 448
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 449 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 506
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 507 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 563
>gi|182683312|ref|YP_001835059.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
pneumoniae CGSP14]
gi|221231217|ref|YP_002510369.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
pneumoniae ATCC 700669]
gi|415696865|ref|ZP_11456507.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 459-5]
gi|415748701|ref|ZP_11476753.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae SV35]
gi|415751427|ref|ZP_11478662.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae SV36]
gi|418122648|ref|ZP_12759583.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA44378]
gi|418127231|ref|ZP_12764129.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae NP170]
gi|418177378|ref|ZP_12813963.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA41565]
gi|182628646|gb|ACB89594.1| ATP-dependent Clp protease, ATP-binding subunit, putative
[Streptococcus pneumoniae CGSP14]
gi|220673677|emb|CAR68168.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus pneumoniae ATCC 700669]
gi|353798121|gb|EHD78451.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA44378]
gi|353801036|gb|EHD81344.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae NP170]
gi|353845820|gb|EHE25860.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA41565]
gi|379070549|gb|AFC91869.1| ClpL [Streptococcus pneumoniae]
gi|379070551|gb|AFC91870.1| ClpL [Streptococcus pneumoniae]
gi|379070553|gb|AFC91871.1| ClpL [Streptococcus pneumoniae]
gi|379070555|gb|AFC91872.1| ClpL [Streptococcus pneumoniae]
gi|379070557|gb|AFC91873.1| ClpL [Streptococcus pneumoniae]
gi|379070559|gb|AFC91874.1| ClpL [Streptococcus pneumoniae]
gi|379070561|gb|AFC91875.1| ClpL [Streptococcus pneumoniae]
gi|381311032|gb|EIC51857.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae SV36]
gi|381318958|gb|EIC59675.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae SV35]
gi|381319958|gb|EIC60640.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 459-5]
Length = 701
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQNKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|419498925|ref|ZP_14038625.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47597]
gi|379603813|gb|EHZ68581.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47597]
Length = 701
Score = 45.1 bits (105), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|418111681|ref|ZP_12748686.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA41538]
gi|353786738|gb|EHD67149.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA41538]
Length = 701
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|168484215|ref|ZP_02709167.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae CDC1873-00]
gi|418161390|ref|ZP_12798081.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA17328]
gi|418172729|ref|ZP_12809343.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA41277]
gi|418175158|ref|ZP_12811756.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA41437]
gi|418218093|ref|ZP_12844761.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae NP127]
gi|172042550|gb|EDT50596.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae CDC1873-00]
gi|353830980|gb|EHE11109.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA17328]
gi|353839428|gb|EHE19502.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA41277]
gi|353843718|gb|EHE23762.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA41437]
gi|353876290|gb|EHE56139.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae NP127]
Length = 701
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|402837571|ref|ZP_10886090.1| putative negative regulator of genetic competence ClpC/MecB
[Eubacteriaceae bacterium OBRC8]
gi|402274864|gb|EJU24034.1| putative negative regulator of genetic competence ClpC/MecB
[Eubacteriaceae bacterium OBRC8]
Length = 843
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 83/160 (51%), Gaps = 28/160 (17%)
Query: 466 ELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA----KKATWFLLQGNDTIG 521
EL+ ++ +L K LQ++V Q ++I ++ + + ++ KK + F+ G +G
Sbjct: 534 ELTVEESIKLMNLEKNLQKSVIGQDEAISTVSKSIRRNRAGISPVKKPSSFIFVGPTGVG 593
Query: 522 KRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL- 569
K +L S+A+ +FGS D++ IDM ++ + HS +G+ Y +K+
Sbjct: 594 KTQLVKSLAKEMFGSEDMIIRIDM---SEYMEKHSVSKFIGSPPGYVGFDEGGQLTDKVR 650
Query: 570 -----VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
++L+++I+ A P ++IL DG T++ G+V+
Sbjct: 651 RKPYSIILLDEIEKAHPDVFNMLLQILDDGRLTDSQGRVV 690
>gi|375007935|ref|YP_004981568.1| negative regulator of genetic competence [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|359286784|gb|AEV18468.1| Negative regulator of genetic competence [Geobacillus
thermoleovorans CCB_US3_UF5]
Length = 710
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 29/145 (20%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAESVFGS 536
L + V Q +++ + + + ++ KA FL G +GK LA ++AE +FG+
Sbjct: 419 LAKKVIGQAEAVKKVAKAIRRSRAGLKAKHRPIGSFLFVGPTGVGKTELAKTLAEELFGT 478
Query: 537 TDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVEDIDLA 579
D + +DM ++ + HS L+G+ Y EK+ ++L+++I+ A
Sbjct: 479 KDAMIRLDM---SEYMEKHSVSKLIGSPPGYVGFEEAGQLTEKVRRNPYSIILLDEIEKA 535
Query: 580 DPQ----FIKILADGFETENFGKVI 600
P F++IL DG T++ G+ +
Sbjct: 536 HPDVQHIFLQILEDGRLTDSQGRTV 560
>gi|329940378|ref|ZP_08289659.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Streptomyces
griseoaurantiacus M045]
gi|329300439|gb|EGG44336.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Streptomyces
griseoaurantiacus M045]
Length = 843
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 70/146 (47%), Gaps = 23/146 (15%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAES 532
L K L E V Q +++ ++ E ++ ++ + FL G +GK LA ++AE+
Sbjct: 537 LEKHLHERVVGQDEAVRAVSEAVLRSRAGLASPDRPIGSFLFLGPTGVGKTELARALAEA 596
Query: 533 VFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDL 578
+FGS + + +DM + + G H E L ++ + ++L+++++
Sbjct: 597 LFGSEERMVRLDMSEYQERHTVSRLVGAPPGYVGHEEAGQLTEVVRRHPYSLLLLDEVEK 656
Query: 579 ADPQ----FIKILADGFETENFGKVI 600
A P +++L DG T++ G+ +
Sbjct: 657 AHPDVFNILLQVLDDGRLTDSQGRTV 682
>gi|116493171|ref|YP_804906.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Pediococcus pentosaceus ATCC 25745]
gi|116103321|gb|ABJ68464.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Pediococcus pentosaceus ATCC 25745]
Length = 821
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAE 531
+L K L E V Q +++ S+ + +S K+ F+ G +GK LA S+A+
Sbjct: 508 NLEKTLHERVIGQKEAVSSVARAIRRARSGLKSPKRPIGSFMFLGPTGVGKTELAKSLAD 567
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
+FGS D + IDM + + S+ L+G+ Y E++ VVL ++
Sbjct: 568 IMFGSEDNMIRIDMSEYMERYSTSR--LVGSAPGYVGYDEGGQLTEQVRRKPYSVVLFDE 625
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++ DGF T++ G+ +
Sbjct: 626 VEKAHPDVFNLLLQVFDDGFLTDSKGRRV 654
>gi|419452366|ref|ZP_13992341.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae EU-NP03]
gi|379628329|gb|EHZ92933.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae EU-NP03]
Length = 683
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ + + ++ + FL G+ +GK
Sbjct: 383 SDIERLK--DMAHRLQDKVIGQDKAVEVVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 440
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 441 TELAKQLALDMFGTQDAIIRLDMSEYSDHTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 498
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 499 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 555
>gi|384914741|ref|ZP_10015493.1| Chaperone protein ClpB [Methylacidiphilum fumariolicum SolV]
gi|384527358|emb|CCG91361.1| Chaperone protein ClpB [Methylacidiphilum fumariolicum SolV]
Length = 836
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 27/144 (18%)
Query: 482 LQENVPWQFDSIHSIVEVL----VECKSAKKATW-FLLQGNDTIGKRRLALSIAESVFGS 536
L++ V Q ++I ++ L + K K+ F+ G +GK LA ++AE VFGS
Sbjct: 520 LRKRVIGQDEAIEALSRALQRSRADLKDPKRPIGSFIFLGPTGVGKTMLAKTLAEYVFGS 579
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
D L IDM + + + L+G+ Y EK+ VVL ++I+ A
Sbjct: 580 ADALIQIDMSEYMEKFNVSR--LIGSPPGYVGYEEGGQLTEKIRRRPYSVVLFDEIEKAH 637
Query: 581 PQ----FIKILADGFETENFGKVI 600
P ++IL DG T++ G+ I
Sbjct: 638 PDVWNILLQILEDGIVTDSLGRKI 661
>gi|418237929|ref|ZP_12864486.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae NorthCarolina6A-23]
gi|419461488|ref|ZP_14001405.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA02714]
gi|419525109|ref|ZP_14064675.1| AAA domain family protein [Streptococcus pneumoniae GA14373]
gi|353895062|gb|EHE74802.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae NorthCarolina6A-23]
gi|379535013|gb|EHZ00220.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA02714]
gi|379560813|gb|EHZ25835.1| AAA domain family protein [Streptococcus pneumoniae GA14373]
Length = 691
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 391 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 448
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 449 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 506
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 507 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 563
>gi|291550515|emb|CBL26777.1| ATPases with chaperone activity, ATP-binding subunit [Ruminococcus
torques L2-14]
Length = 814
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 76/159 (47%), Gaps = 23/159 (14%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVL----VECKSAKKATW-FLLQGNDT 519
S+L++S + +L VLQ+ V Q +++ ++ + V K K+ FL G
Sbjct: 493 SKLAESDAQRLKNLENVLQKRVIGQDEAVGAVARAVKRGRVGLKDPKRPIGSFLFLGPTG 552
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKN 565
+GK L+ ++AE++FG D + +DM + + G H E L ++
Sbjct: 553 VGKTELSKALAEALFGKEDAMIRVDMSEYMEKHSVSKMIGSPPGYVGHEEGGQLSDQVRT 612
Query: 566 YEKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
+ V+L ++I+ A P +++L DG T++ G+ +
Sbjct: 613 HPYSVILFDEIEKAHPDVFNVLLQVLDDGHITDSQGRKV 651
>gi|289168595|ref|YP_003446864.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
mitis B6]
gi|288908162|emb|CBJ23004.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
mitis B6]
Length = 701
Score = 45.1 bits (105), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|320159824|ref|YP_004173048.1| ATP-dependent Clp protease ATP-binding subunit [Anaerolinea
thermophila UNI-1]
gi|319993677|dbj|BAJ62448.1| ATP-dependent Clp protease ATP-binding subunit [Anaerolinea
thermophila UNI-1]
Length = 818
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 64/142 (45%), Gaps = 23/142 (16%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAESVFGS 536
L E + Q +++H+I + + +S K F+ G +GK LA ++AE +FG
Sbjct: 509 LHERIIGQDEAVHAIADAIRRARSGLKDPRRPIGSFIFIGPSGVGKTELARALAEFLFGD 568
Query: 537 TDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADPQ 582
D L +DM + + G + E L ++ V+L ++I+ A P+
Sbjct: 569 EDALVRLDMSEYREQHTVSRLFGAPPGYVGYEEGGQLTEAVRRRPYRVILFDEIEKAHPE 628
Query: 583 ----FIKILADGFETENFGKVI 600
++IL DG T+ G V+
Sbjct: 629 VWNALLQILDDGRLTDGQGHVV 650
>gi|307704197|ref|ZP_07641120.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
mitis SK597]
gi|307622228|gb|EFO01242.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
mitis SK597]
Length = 701
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|307711387|ref|ZP_07647805.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
mitis SK321]
gi|307616805|gb|EFN95987.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
mitis SK321]
Length = 701
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|365902518|ref|ZP_09440341.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus malefermentans KCTC 3548]
Length = 832
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L VL + V Q +++ ++ + +S K F+ G +GK LA ++AE
Sbjct: 511 NLESVLHKRVIGQEEAVSAVSRAIRRARSGLKDPNRPIGSFMFLGPTGVGKTELAKALAE 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D + +DM + + S+ L+G+ Y EK+ VVL ++
Sbjct: 571 AMFGSEDNMIRVDMSEYMEKYSTSR--LIGSAPGYVGYDEGGQLTEKVRQKPYSVVLFDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DGF T++ G+ +
Sbjct: 629 VEKAHPDVFNILLQVLDDGFLTDSKGRRV 657
>gi|149006090|ref|ZP_01829819.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae SP18-BS74]
gi|307126552|ref|YP_003878583.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
pneumoniae 670-6B]
gi|418129517|ref|ZP_12766401.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA07643]
gi|418131751|ref|ZP_12768627.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA11304]
gi|419477004|ref|ZP_14016830.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA18068]
gi|147762446|gb|EDK69407.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae SP18-BS74]
gi|306483614|gb|ADM90483.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
pneumoniae 670-6B]
gi|353802809|gb|EHD83101.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA07643]
gi|353808543|gb|EHD88809.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA11304]
gi|379567803|gb|EHZ32786.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA18068]
Length = 701
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ + + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEVVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|421894145|ref|ZP_16324636.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Pediococcus
pentosaceus IE-3]
gi|385272973|emb|CCG90008.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Pediococcus
pentosaceus IE-3]
Length = 821
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAE 531
+L K L E V Q +++ S+ + +S K+ F+ G +GK LA S+A+
Sbjct: 508 NLEKTLHERVIGQEEAVSSVARAIRRARSGLKSPKRPIGSFMFLGPTGVGKTELAKSLAD 567
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
+FGS D + IDM + + S+ L+G+ Y E++ VVL ++
Sbjct: 568 IMFGSEDNMIRIDMSEYMERYSTSR--LVGSAPGYVGYDEGGQLTEQVRRKPYSVVLFDE 625
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++ DGF T++ G+ +
Sbjct: 626 VEKAHPDVFNLLLQVFDDGFLTDSKGRRV 654
>gi|308044249|ref|NP_001183039.1| uncharacterized protein LOC100501371 [Zea mays]
gi|238008946|gb|ACR35508.1| unknown [Zea mays]
Length = 366
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 14/101 (13%)
Query: 459 TLALGNSELSDSAKLQRSDL--YKVLQEN----VPWQFDSIHSIVEVLVECKSA------ 506
T A G + Q DL YK+L E+ V Q +++ +I +V C+S
Sbjct: 231 TSAFGQWQRPSPLATQSFDLSNYKLLMEHLFKVVGRQEEALSAICASIVRCRSMERRRGA 290
Query: 507 --KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDM 545
K WF G D+I KRR+ +++AE + GS+ L ++D+
Sbjct: 291 NKKNDIWFSFYGPDSIAKRRVGVALAELMHGSSGNLIYLDL 331
>gi|421858335|ref|ZP_16290606.1| ATPase [Paenibacillus popilliae ATCC 14706]
gi|410832093|dbj|GAC41043.1| ATPase [Paenibacillus popilliae ATCC 14706]
Length = 812
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ +VL E V Q +++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 501 NMEEVLHERVIGQDEAVKAVSRAIRRARAGLKDPKRPMGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEM-LMGTLKNY----------EKL------VVLVE 574
S+FG + + IDM ++ + HS L+G Y EK+ VVL++
Sbjct: 561 SLFGDENAVIRIDM---SEYMEKHSTARLVGAPPGYVGYEEGGQLTEKVRRKPYSVVLLD 617
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+++ A P+ +++L DG T++ G+V+
Sbjct: 618 EVEKAHPEVFNILLQVLEDGRLTDSKGRVV 647
>gi|395239594|ref|ZP_10417467.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
gigeriorum CRBIP 24.85]
gi|394476166|emb|CCI87444.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
gigeriorum CRBIP 24.85]
Length = 681
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 26/160 (16%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW----FLLQGNDTI 520
SEL + DL K L+E V Q +I I + + + K + FLL G +
Sbjct: 367 SELHADEAQKNLDLAKSLKEVVIDQDRAIDVITDAVARKQPFKDSNRPTGSFLLTGPTGV 426
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL- 569
GK LA +A +FG+ D +DM + D ++ + L+G+ Y EK+
Sbjct: 427 GKTELAKQLATKLFGNKDHFIRLDMSEYQDQMAVNK--LIGSAPGYVGYGEGGQLTEKVR 484
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++L ++I+ A+PQ ++I+ DG T+ G+ I
Sbjct: 485 HQPYSLILFDEIEKANPQVFNALLQIMDDGRLTDAQGRTI 524
Score = 43.1 bits (100), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 16/180 (8%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P E I V E+ R+K+ N V++G ++V R+ G VP +++ H+I
Sbjct: 66 PVIGRDEQIDNVIEILSRRKKNNPVLIGPAGVGKTSIVEGLAQRIASGKVPAKMRNMHII 125
Query: 127 KFH----FAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNN 182
+ A +LR +E +LKR +D I++ +L V +++
Sbjct: 126 AININDMLAGTSLRGSFEE-------KLKRVIDQAKK-NPNVILFIDELHNIVGAGSTDS 177
Query: 183 NNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEI 242
NN NG+ A+ P L S KL+ ++ R+ A + + + Q+ +P E+
Sbjct: 178 ENN-NGDAANILKP--ALASGDLKLIGATTTSEYQRIE-KDPALARRFQQVQVPEPTQEV 233
>gi|392956663|ref|ZP_10322189.1| ATPase AAA [Bacillus macauensis ZFHKF-1]
gi|391877160|gb|EIT85754.1| ATPase AAA [Bacillus macauensis ZFHKF-1]
Length = 723
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 25/155 (16%)
Query: 469 DSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKAT-----WFLLQGNDTIGKR 523
+ AKL+ DL L + V Q +++H + + + ++ KA FL G +GK
Sbjct: 413 EQAKLK--DLAHNLAQRVIGQEEAVHKVAKAIRRSRAGLKAKNRPIGSFLFVGPTGVGKT 470
Query: 524 RLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKL 569
L S+A +FG D + +DM + + G H E L ++
Sbjct: 471 ELTKSLAGELFGDQDAMIRLDMSEYMEKHAVSKLIGSPPGYVGHEEAGQLTEIVRRKPYS 530
Query: 570 VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
++L+++I+ A P F++I+ DG T++ G+ +
Sbjct: 531 IILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTV 565
>gi|384914574|ref|ZP_10015358.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
with DnaK, DnaJ, and GrpE [Methylacidiphilum
fumariolicum SolV]
gi|384527459|emb|CCG91226.1| ATP-dependent protease, Hsp 100, part of multi-chaperone system
with DnaK, DnaJ, and GrpE [Methylacidiphilum
fumariolicum SolV]
Length = 868
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 97/212 (45%), Gaps = 45/212 (21%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L ++L + V Q ++++++V+ ++ +S K F+ G +GK LA S+AE+
Sbjct: 568 LDQILHKRVVGQDEAVNAVVDAILRARSGLKDPKRPIGSFIFLGPTGVGKTELARSLAEA 627
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL----------------VVLVED 575
+F S + + +DM ++ + H+ L+G Y V+L+++
Sbjct: 628 LFDSEENMIRLDM---SEYMEKHTVARLIGAPPGYVGFEEGGQLTEAVRRKPYSVLLLDE 684
Query: 576 IDLADPQ----FIKILADGFETENFGK------VIFVLTKGDSSNYEERIENQDSVINMT 625
I+ A P+ F++IL DG T+ G+ I ++T S Y + +++ T
Sbjct: 685 IEKAHPEVFNLFLQILEDGRLTDGHGRTVDFKNTIIIMTSNIGSVY----LTESALMGGT 740
Query: 626 LKVNERNQNFDHKRKA-EWEFANKTKSPRIDE 656
++ + R + + R EF N RIDE
Sbjct: 741 IREDVRTKIMEELRAVFRPEFLN-----RIDE 767
>gi|357118066|ref|XP_003560780.1| PREDICTED: chaperone protein ClpB1-like [Brachypodium distachyon]
Length = 900
Score = 44.7 bits (104), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECK-----SAKKATWFLLQGNDTIGKRRLALSIAES 532
L K L E V Q ++++ + + ++ + S + FL G +GK +LA ++AE
Sbjct: 326 LPKKLHERVVGQDEAVNLVAQAVLRSRVGIGQSGQPIASFLFLGPVGVGKTQLAKALAEK 385
Query: 533 VFGSTDLLFHIDMRK-RNDGVSSH-------------------SEMLMGTLKNYEKLVVL 572
+F + +L DM + G SH +L + Y V+L
Sbjct: 386 IFDNKKMLRRFDMSEYAGSGSVSHLIGGPRRFSYILILHVYEEEGLLTEEARRYPYSVIL 445
Query: 573 VEDIDLADPQ----FIKILADGFETENFG 597
+++D ADP FI++L DG T+ G
Sbjct: 446 FDEVDKADPSVFKVFIQLLDDGILTDGKG 474
>gi|418147804|ref|ZP_12784571.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA13856]
gi|353814002|gb|EHD94229.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA13856]
Length = 691
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ + + ++ + FL G+ +GK
Sbjct: 391 SDIERLK--DMAHRLQDKVIGQDKAVEVVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 448
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 449 TELAKQLALDMFGTQDAIIRLDMSEYSDHTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 506
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 507 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 563
>gi|417676114|ref|ZP_12325527.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA17545]
gi|418154388|ref|ZP_12791119.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA16242]
gi|418224788|ref|ZP_12851418.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae NP112]
gi|332076779|gb|EGI87241.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA17545]
gi|353822680|gb|EHE02855.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA16242]
gi|353883432|gb|EHE63240.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae NP112]
Length = 701
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ + + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEVVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|407717970|ref|YP_006795375.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Leuconostoc
carnosum JB16]
gi|407241726|gb|AFT81376.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Leuconostoc
carnosum JB16]
Length = 688
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 87/187 (46%), Gaps = 29/187 (15%)
Query: 437 KPQGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSI 496
KPQ V + D LK E K + +G+ + ++ +LQ DL K L ++V Q ++ ++
Sbjct: 352 KPQPVTEK-DILKIIEDK---TDIPVGDLKENEVNQLQ--DLDKQLSKHVIGQDSAVQTV 405
Query: 497 VEVLVE-----CKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND- 550
+ + KS + FL G +GK LA +A+ +FGS D L DM + +
Sbjct: 406 SKAIRRNRIGLTKSGRPIGSFLFVGPTGVGKTELAKQLAKEMFGSKDALIRFDMSEYMEK 465
Query: 551 -----------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADP----QFIKILADGFET 593
G + E L ++ + +VL+++I+ A P F++IL DG T
Sbjct: 466 HSVSKMIGAPAGYIGYEEAGQLTEQVRRHPYSLVLIDEIEKAHPDVMNMFLQILDDGRLT 525
Query: 594 ENFGKVI 600
+ G ++
Sbjct: 526 DAQGHIV 532
>gi|374340693|ref|YP_005097429.1| chaperone ATPase [Marinitoga piezophila KA3]
gi|372102227|gb|AEX86131.1| ATPase with chaperone activity, ATP-binding subunit [Marinitoga
piezophila KA3]
Length = 832
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 25/164 (15%)
Query: 460 LALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA----KKATW-FLL 514
+ L E+S+ +L +L VL E V Q D+I ++ + + +S K+ T FL
Sbjct: 500 VPLKKLEMSEMERLL--NLEAVLHERVIGQDDAIKAVSKAIRRARSGIKDPKRPTGVFLF 557
Query: 515 QGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLM 560
G +GK LA +IAE +FG L IDM + + G + E L
Sbjct: 558 LGPTGVGKTELAKTIAEYLFGDEKALVRIDMSEYMEKFNVSRLVGAPPGYVGYEEGGQLT 617
Query: 561 GTLKNYEKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++ V+L+++I+ A P ++I+ DG T++ G+++
Sbjct: 618 EAVRRRPYSVILLDEIEKAHPDVYNLLLQIMDDGRLTDSQGRIV 661
>gi|421265410|ref|ZP_15716294.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae SPAR27]
gi|395869432|gb|EJG80547.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae SPAR27]
Length = 691
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ + + ++ + FL G+ +GK
Sbjct: 391 SDIERLK--DMAHRLQDKVIGQDKAVEVVARAICRNRAGFDEGNRPIGNFLFVGSTGVGK 448
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 449 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 506
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 507 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 563
>gi|348589434|ref|YP_004873896.1| ClpB protein [Taylorella asinigenitalis MCE3]
gi|347973338|gb|AEP35873.1| ClpB protein [Taylorella asinigenitalis MCE3]
Length = 948
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Query: 11 IKNHIEDSSASSVFQCYTSSGGGVFSSPC-SPSSSEAHHFINPNTFWQNHALFSSQKPAS 69
+KN E+ + + Q TSSG +SP S S+ A + ++ +N + P S
Sbjct: 154 VKNSAEEKDSVGLGQ--TSSGAPASASPQNSGKSALAQYAVDLTAKARNKEI----DPVS 207
Query: 70 VSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFH 129
E+I+ + ++ +R+++ N ++ G+ A+V F R+ +GDVP+ L+ +
Sbjct: 208 GRDEEIRQIVDILMRRRQNNPLLTGEAGVGKTAVVEGFALRLAKGDVPETLRDVTLYLLD 267
Query: 130 FAPVTLRFMKKEEVEMNLTELKRKVDS------------LTSVGGGAIIYTGD 170
+ K E E L + +V S T VG G TGD
Sbjct: 268 IGLLQAGASMKGEFESRLRSVIDEVQSSEKPIVLFIDEIHTLVGAGGAQGTGD 320
>gi|15902351|ref|NP_357901.1| ATP-dependent protease ATP-binding subunit [Streptococcus
pneumoniae R6]
gi|116515968|ref|YP_815825.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
pneumoniae D39]
gi|15457861|gb|AAK99111.1| ATP-dependent protease ATP-binding subunit [Streptococcus
pneumoniae R6]
gi|116076544|gb|ABJ54264.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
pneumoniae D39]
Length = 701
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ + + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEVVARAICRNRAGFDEGNRPIGNFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|420146514|ref|ZP_14653925.1| Chaperone protein ClpB [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398401747|gb|EJN55199.1| Chaperone protein ClpB [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 829
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 77/160 (48%), Gaps = 33/160 (20%)
Query: 472 KLQRSD------LYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTI 520
+LQ+S+ L KVL + V Q ++ ++ + +S K F+ G +
Sbjct: 501 QLQKSETERLINLEKVLHKRVIGQEAAVSAVSRAIRRARSGLKDPQRPIGSFMFLGPTGV 560
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL- 569
GK LA ++AE++FGS D + +DM + + S+ L+G Y EK+
Sbjct: 561 GKTELAKALAEAMFGSEDNMIRVDMSEYMEKYSTSR--LVGAPPGYVGYEEGGQLTEKVR 618
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
VVL+++++ A P +++L DG+ T++ G+ +
Sbjct: 619 QKPYSVVLLDEVEKAHPDVFNILLQVLDDGYLTDSKGRRV 658
>gi|419529614|ref|ZP_14069147.1| AAA domain family protein [Streptococcus pneumoniae GA40028]
gi|379575473|gb|EHZ40405.1| AAA domain family protein [Streptococcus pneumoniae GA40028]
Length = 691
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ + + ++ + FL G+ +GK
Sbjct: 391 SDIERLK--DMAHRLQDKVIGQDKAVEVVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 448
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 449 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 506
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 507 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 563
>gi|77409795|ref|ZP_00786444.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
agalactiae COH1]
gi|77171594|gb|EAO74814.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
agalactiae COH1]
Length = 303
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 24/143 (16%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
L+ V Q D++ ++ + ++ + FL G +GK LA +A +FGS
Sbjct: 16 LKGKVIGQNDAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLAFDMFGS 75
Query: 537 TDLLFHIDMRKRND---------------GVSSHSEMLMGTLKNYEKLVVLVEDIDLADP 581
D + +DM + ND G +S L ++ +VL+++I+ ADP
Sbjct: 76 KDAIVRLDMSEYNDRTAVSKLIGATAGYVGYDDNSNTLTERIRRNPYSIVLLDEIEKADP 135
Query: 582 QFI----KILADGFETENFGKVI 600
Q I ++L DG T+ G I
Sbjct: 136 QVITLLLQVLDDGRLTDGQGNTI 158
>gi|365156940|ref|ZP_09353224.1| hypothetical protein HMPREF1015_00634 [Bacillus smithii 7_3_47FAA]
gi|363626203|gb|EHL77202.1| hypothetical protein HMPREF1015_00634 [Bacillus smithii 7_3_47FAA]
Length = 720
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 80/162 (49%), Gaps = 35/162 (21%)
Query: 471 AKLQRSDLYKV--LQEN----VPWQFDSIHSIVEVLVECKSAKKAT-----WFLLQGNDT 519
KLQ+ + K+ L+EN V Q +++ + + + ++ KA FL G
Sbjct: 412 GKLQQDEQEKMKHLEENLAKKVIGQDEAVKKVAKAIKRSRAGLKAKNRPIGSFLFVGPTG 471
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EK 568
+GK L+ ++AE +FGS D + +DM ++ + HS L+G+ Y EK
Sbjct: 472 VGKTELSKTLAEELFGSKDAMIRLDM---SEYMEKHSVSKLIGSPPGYVGHEEAGQLTEK 528
Query: 569 L------VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
+ ++L+++I+ A P F++IL DG T++ G+ +
Sbjct: 529 VRRNPYSIILLDEIEKAHPDVQHMFLQILEDGRLTDSQGRTV 570
>gi|363895070|ref|ZP_09322090.1| hypothetical protein HMPREF9629_00388 [Eubacteriaceae bacterium
ACC19a]
gi|361959827|gb|EHL13088.1| hypothetical protein HMPREF9629_00388 [Eubacteriaceae bacterium
ACC19a]
Length = 694
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 83/160 (51%), Gaps = 28/160 (17%)
Query: 466 ELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA----KKATWFLLQGNDTIG 521
EL+ ++ +L K LQ++V Q ++I ++ + + ++ KK + F+ G +G
Sbjct: 385 ELTVEESIKLMNLEKNLQKSVIGQDEAISTVSKSIRRNRAGISPVKKPSSFIFVGPTGVG 444
Query: 522 KRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL- 569
K +L S+A+ +FGS D++ IDM ++ + HS +G+ Y +K+
Sbjct: 445 KTQLVKSLAKEMFGSEDMIIRIDM---SEYMEKHSVSKFIGSPPGYVGFDEGGQLTDKVR 501
Query: 570 -----VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
++L+++I+ A P ++IL DG T++ G+V+
Sbjct: 502 RKPYSIILLDEIEKAHPDVFNMLLQILDDGRLTDSQGRVV 541
>gi|168486623|ref|ZP_02711131.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae CDC1087-00]
gi|418184136|ref|ZP_12820684.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47283]
gi|419509677|ref|ZP_14049322.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae NP141]
gi|421212384|ref|ZP_15669348.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2070108]
gi|421214598|ref|ZP_15671531.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2070109]
gi|183570388|gb|EDT90916.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae CDC1087-00]
gi|353851734|gb|EHE31724.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47283]
gi|379634863|gb|EHZ99427.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae NP141]
gi|395581728|gb|EJG42196.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2070108]
gi|395582685|gb|EJG43140.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2070109]
Length = 701
Score = 44.7 bits (104), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ + + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEVVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|408790036|ref|ZP_11201670.1| ATP-dependent Clp protease [Lactobacillus florum 2F]
gi|408520775|gb|EKK20809.1| ATP-dependent Clp protease [Lactobacillus florum 2F]
Length = 823
Score = 44.7 bits (104), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 95/207 (45%), Gaps = 52/207 (25%)
Query: 469 DSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKR 523
DS +L +L + L + V Q +++ S+ + +S K FL G +GK
Sbjct: 505 DSQRL--VNLEQELHKRVVGQDEAVSSVARAVRRARSGLKDPNRPIGSFLFLGPTGVGKT 562
Query: 524 RLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL---- 569
LA +AE++FGS D + +DM + + S+ L+G+ Y EK+
Sbjct: 563 ELAKDLAETMFGSEDDVIRVDMSEYMEKYSTSR--LVGSAPGYVGFEEGGQLTEKVRKHP 620
Query: 570 --VVLVEDIDLADPQ----FIKILADGFETENFGKVIFVLTKGDSSNYEERIENQDSVIN 623
V+L+++++ A P +++L DGF T++ G+ R++ ++++I
Sbjct: 621 YSVILLDEVEKAHPDVFNIMLQVLDDGFLTDSKGR---------------RVDFRNTIII 665
Query: 624 MTLKVNE---RNQ-----NFDHKRKAE 642
MT + R+Q + DH R+ E
Sbjct: 666 MTSNLGAAALRDQKTVGFDADHARRDE 692
>gi|419465975|ref|ZP_14005861.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA05248]
gi|419511779|ref|ZP_14051413.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA05578]
gi|421282567|ref|ZP_15733357.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
pneumoniae GA04216]
gi|379547547|gb|EHZ12684.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA05248]
gi|379636249|gb|EIA00807.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA05578]
gi|395884537|gb|EJG95575.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
pneumoniae GA04216]
Length = 701
Score = 44.7 bits (104), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ + + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEVVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|347534793|ref|YP_004841463.1| Negative regulator of genetic competence clpC/mecB [Lactobacillus
sanfranciscensis TMW 1.1304]
gi|345504849|gb|AEN99531.1| Negative regulator of genetic competence clpC/mecB [Lactobacillus
sanfranciscensis TMW 1.1304]
Length = 825
Score = 44.7 bits (104), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L VL + V Q +++ ++ + + +S K F+ G +GK LA +AE
Sbjct: 516 NLENVLHKRVIGQDEAVTAVAKAVRRARSGLKDPNRPIGSFIFLGPTGVGKTELAKDLAE 575
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
+FGS D + +DM + + S+ L+G+ Y EK+ VVL+++
Sbjct: 576 EMFGSEDDVIRVDMSEYMEKYSTSR--LVGSAPGYVGYEEGGQLTEKVRKHPYSVVLLDE 633
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DGF T++ G+ +
Sbjct: 634 VEKAHPDVFNLLLQVLDDGFLTDSKGRKV 662
>gi|417697806|ref|ZP_12346979.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA41317]
gi|419505329|ref|ZP_14044990.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA49194]
gi|332202247|gb|EGJ16316.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA41317]
gi|379607243|gb|EHZ71989.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA49194]
Length = 701
Score = 44.7 bits (104), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ + + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEVVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDHTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|81429074|ref|YP_396074.1| ATPase/chaperone ClpE, specificity factor for ClpP protease
[Lactobacillus sakei subsp. sakei 23K]
gi|78610716|emb|CAI55767.1| ATPase/chaperone ClpE, putative specificity factor for ClpP
protease [Lactobacillus sakei subsp. sakei 23K]
Length = 721
Score = 44.7 bits (104), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 31/206 (15%)
Query: 420 RQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQRSDLY 479
R Q E N K Q EP + + E K + +G EL + Q +L
Sbjct: 372 RDQVTQLSEMKANNSVEKSQ--EPTITEKDMEKIVEEKTHIPVG--ELKAQEQAQLKNLA 427
Query: 480 KVLQENVPWQFDSIHSIVEVLVEC-----KSAKKATWFLLQGNDTIGKRRLALSIAESVF 534
+ L+ +V Q ++ + + KS + FL G +GK LA IA+ +F
Sbjct: 428 QDLEAHVIGQDTAVDKVARSIRRSRIGFNKSGRPIGSFLFVGPTGVGKTELAKQIAKELF 487
Query: 535 GSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDL 578
GSTD + DM + + S L+G+ Y E++ ++L+++I+
Sbjct: 488 GSTDAMIRFDMSEYMEKFSVSK--LIGSPPGYVGYEEAGQLTEQVRRNPYSLILLDEIEK 545
Query: 579 ADP----QFIKILADGFETENFGKVI 600
A P F++IL DG T++ G+ +
Sbjct: 546 AHPDVMHMFLQILDDGRLTDSQGRTV 571
>gi|406830251|ref|ZP_11089845.1| ATP-dependent chaperone ClpB [Schlesneria paludicola DSM 18645]
Length = 871
Score = 44.7 bits (104), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 69/169 (40%), Gaps = 13/169 (7%)
Query: 17 DSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNH--------ALFSSQK-- 66
D A V + + V S+ + S++ NP +Q AL + K
Sbjct: 120 DDQAQRVLKLNGVTEADVLSALKTVRGSQSVTDQNPEDKYQALEKYGKDLVALAQAGKID 179
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P ++I+ V +V R+++ N V++GD A+V R+ GDVPQ LK VI
Sbjct: 180 PVIGRDQEIRRVIQVLSRRRKNNPVLIGDAGVGKTAIVEGLAHRIVMGDVPQNLKDKRVI 239
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
+ + E E L + ++V + G I++ +L V
Sbjct: 240 ALDMGALIAGAKYRGEFEDRLKAVLKEV---SEADGRVILFIDELHTVV 285
>gi|405761482|ref|YP_006702078.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
pneumoniae SPNA45]
gi|404278371|emb|CCM08985.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus pneumoniae SPNA45]
Length = 701
Score = 44.7 bits (104), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ + + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEVVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQMALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|433461663|ref|ZP_20419269.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Halobacillus
sp. BAB-2008]
gi|432189835|gb|ELK46900.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Halobacillus
sp. BAB-2008]
Length = 819
Score = 44.7 bits (104), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 74/150 (49%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L + L V Q +++ +I + + ++ K F+ G +GK LA ++AE
Sbjct: 508 NLEETLHNRVIGQEEAVKAISKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 567
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
S+FG D + IDM ++ + HS L+G+ Y EK+ VVL++
Sbjct: 568 SMFGEEDAMIRIDM---SEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRNKPYSVVLLD 624
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P+ +++L DG T++ G+++
Sbjct: 625 EIEKAHPEVFNILLQVLEDGRLTDSKGRLV 654
>gi|229917386|ref|YP_002886032.1| ATPase AAA [Exiguobacterium sp. AT1b]
gi|229468815|gb|ACQ70587.1| ATPase AAA-2 domain protein [Exiguobacterium sp. AT1b]
Length = 811
Score = 44.7 bits (104), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L +L V Q D++ SI + ++ K F+ G +GK LA ++AE+
Sbjct: 502 LESILHNRVIGQDDAVKSISRAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARAVAEA 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + IDM ++ + H+ L+G+ Y EK+ V+L+++
Sbjct: 562 MFGDEDAIIRIDM---SEYMEKHATSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVILLDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P+ +++L DG T++ G+ +
Sbjct: 619 IEKAHPEVFNILLQVLDDGRLTDSKGRTV 647
>gi|405761481|ref|YP_006702077.1| Group II intron maturase [Streptococcus pneumoniae SPNA45]
gi|404278370|emb|CCM08984.1| Group II intron maturase [Streptococcus pneumoniae SPNA45]
Length = 704
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ + + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEVVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQMALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|228477321|ref|ZP_04061959.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
salivarius SK126]
gi|228251340|gb|EEK10511.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
salivarius SK126]
Length = 701
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 34/171 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + ++ + FL G +GK LA +A
Sbjct: 406 DMGHRLQTKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 465
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 466 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRRNPYSIVLLD 523
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYEERI 615
+I+ ADPQ I ++L DG T+ NF + + T YE ++
Sbjct: 524 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYEAKL 574
>gi|227893921|ref|ZP_04011726.1| ATP-dependent protease [Lactobacillus ultunensis DSM 16047]
gi|227864302|gb|EEJ71723.1| ATP-dependent protease [Lactobacillus ultunensis DSM 16047]
Length = 708
Score = 44.7 bits (104), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 26/160 (16%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK----SAKKATWFLLQGNDTI 520
SEL + DL K L++NV Q +I I + + + + + FLL G +
Sbjct: 380 SELHADEAQKNIDLAKKLKKNVIDQDKAIDVITDAIARKQVFKDNDRPTGSFLLTGPTGV 439
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL- 569
GK LA +A +FG+ D +DM + D ++ + L+G+ Y EK+
Sbjct: 440 GKTELAKQLAIQLFGNKDHFIRLDMSEYQDEMAVNK--LIGSAPGYVGYGEGGQLTEKVR 497
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++L ++I+ A+PQ ++I+ DG T+ G+ +
Sbjct: 498 HQPYSLILFDEIEKANPQVFNALLQIMDDGRLTDAQGRTV 537
>gi|421233391|ref|ZP_15690016.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2061617]
gi|395604103|gb|EJG64236.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2061617]
Length = 701
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIICLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|419531613|ref|ZP_14071133.1| AAA domain family protein [Streptococcus pneumoniae GA47794]
gi|379609939|gb|EHZ74676.1| AAA domain family protein [Streptococcus pneumoniae GA47794]
Length = 701
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVVIATSNAGFGYE 573
>gi|408355978|ref|YP_006844509.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Amphibacillus
xylanus NBRC 15112]
gi|407726749|dbj|BAM46747.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Amphibacillus
xylanus NBRC 15112]
Length = 706
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 84/188 (44%), Gaps = 31/188 (16%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW--- 511
E K + + + + AK++ DL L E V Q +++ + + + ++ K
Sbjct: 391 EEKTGIPVQKMQADEQAKMR--DLAVKLSEKVIGQNHAVNKVAKAIRRSRAGLKVATRPI 448
Query: 512 --FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE 557
FL G +GK LA +AE +FG+ D L +DM + + G H E
Sbjct: 449 GSFLFVGPTGVGKTELAKVLAEELFGTRDSLIRLDMSEYMERHSVSKIIGSPPGYVGHEE 508
Query: 558 --MLMGTLKNYEKLVVLVEDIDLADP----QFIKILADGFETENFGKV------IFVLTK 605
L ++ ++L+++I+ A P F++I+ DG T++ G+ + ++T
Sbjct: 509 AGQLTEKVRRNPYSLILLDEIEKAHPDVQHMFLQIMEDGHLTDSHGRTVSFKDCVIIMTS 568
Query: 606 GDSSNYEE 613
S+++E
Sbjct: 569 NAGSSFKE 576
>gi|403743591|ref|ZP_10953143.1| ATPase AAA-2 domain-containing protein [Alicyclobacillus hesperidum
URH17-3-68]
gi|403122621|gb|EJY56826.1| ATPase AAA-2 domain-containing protein [Alicyclobacillus hesperidum
URH17-3-68]
Length = 810
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
+ ++L E V Q +++ ++ + ++ K F+ G +GK LA ++AES
Sbjct: 500 MEQLLHERVIGQDEAVQAVSRAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 559
Query: 533 VFGSTDLLFHIDMRKRNDGVSSH-SEMLMGTLKNY----------EKL------VVLVED 575
+FG D L IDM ++ + H + L+G+ Y EK+ VVL+++
Sbjct: 560 MFGDEDALIRIDM---SEFMERHTTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDE 616
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P+ +++L DG T+ G+ +
Sbjct: 617 IEKAHPEVFNILLQVLDDGRLTDGKGRTV 645
>gi|336394553|ref|ZP_08575952.1| Clp protease/DnaK/DnaJ chaperone ATP-binding subunit [Lactobacillus
farciminis KCTC 3681]
Length = 833
Score = 44.3 bits (103), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 37/174 (21%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L K L + V Q +I ++ + +S K F+ G +GK LA SIAE
Sbjct: 516 NLEKELHKRVIGQDTAISAVSRAIRRARSGMKDPNRPIGSFMFLGPTGVGKTELAKSIAE 575
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
+FGS D + +DM + + S+ L+G+ Y EK+ VVL+++
Sbjct: 576 VMFGSEDNMIRVDMSEYMEQYSTSK--LIGSAPGYVGFDEGGQLTEKVRNEPYSVVLLDE 633
Query: 576 IDLADPQ----FIKILADGFETE------NFGKVIFVLTKGDSSNYEERIENQD 619
++ A P +++L DG T+ +F I ++T SN R N+D
Sbjct: 634 VEKAHPDVFNILLQVLDDGILTDAKGRKVDFRNTIIIMT----SNLGARALNED 683
>gi|28209835|ref|NP_780779.1| negative regulator of genetic competence mecB [Clostridium tetani
E88]
gi|28202270|gb|AAO34716.1| negative regulator of genetic competence mecB [Clostridium tetani
E88]
Length = 767
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 30/137 (21%)
Query: 504 KSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGT 562
KS K+ F+ G +GK L S+A +FG D L IDM ++ + H+ L+G+
Sbjct: 500 KSKKRPASFIFVGPTGVGKTELVRSLACELFGDEDSLIRIDM---SEYMEKHTASKLIGS 556
Query: 563 LKNY----------EKL------VVLVEDIDLADP----QFIKILADGFETENFGKVIF- 601
Y EK+ VVL+++I+ A P +++L DG T+N G+ +F
Sbjct: 557 PPGYVGYDEGGQLTEKIRRKPYSVVLLDEIEKAHPDIFNMLLQVLEDGRLTDNQGRTVFF 616
Query: 602 -----VLTKGDSSNYEE 613
++T +N++E
Sbjct: 617 DNSVIIMTSNLGTNFKE 633
>gi|295702321|ref|YP_003595396.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Bacillus
megaterium DSM 319]
gi|294799980|gb|ADF37046.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Bacillus
megaterium DSM 319]
Length = 813
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 73/150 (48%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ ++L V Q +++ ++ + + ++ K F+ G +GK LA ++AE
Sbjct: 502 NMEEILHSRVIGQEEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 561
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
S+FG D + IDM ++ + HS L+G+ Y EK+ VVL++
Sbjct: 562 SIFGDEDAMIRIDM---SEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLD 618
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P +++L DG T++ G+ +
Sbjct: 619 EIEKAHPDVFNILLQVLEDGRLTDSKGRTV 648
>gi|294496954|ref|YP_003560654.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Bacillus
megaterium QM B1551]
gi|294346891|gb|ADE67220.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Bacillus
megaterium QM B1551]
Length = 812
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 73/150 (48%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ ++L V Q +++ ++ + + ++ K F+ G +GK LA ++AE
Sbjct: 501 NMEEILHSRVIGQEEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
S+FG D + IDM ++ + HS L+G+ Y EK+ VVL++
Sbjct: 561 SIFGDEDAMIRIDM---SEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLD 617
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P +++L DG T++ G+ +
Sbjct: 618 EIEKAHPDVFNILLQVLEDGRLTDSKGRTV 647
>gi|443291207|ref|ZP_21030301.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Micromonospora lupini str. Lupac 08]
gi|385885609|emb|CCH18408.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Micromonospora lupini str. Lupac 08]
Length = 851
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 65/142 (45%), Gaps = 23/142 (16%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
L E V Q D++ ++ E + ++ + FL G +GK LA ++AE++FG
Sbjct: 533 LHEKVVGQDDAVTAVAEAVRRSRAGLADPERPMGSFLFLGPTGVGKTELARALAEALFGE 592
Query: 537 TDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADPQ 582
D + +DM + + G + E L ++ VVL+++I+ A P
Sbjct: 593 ADRMVRVDMSEFQERHTVSRLVGAPPGYVGYEEAGQLTEAVRRRPYAVVLLDEIEKAHPD 652
Query: 583 ----FIKILADGFETENFGKVI 600
+++L DG T++ G+ +
Sbjct: 653 VFNILLQVLDDGRLTDSQGRTV 674
>gi|295694806|ref|YP_003588044.1| ATPase AAA-2 domain-containing protein [Kyrpidia tusciae DSM 2912]
gi|295410408|gb|ADG04900.1| ATPase AAA-2 domain protein [Kyrpidia tusciae DSM 2912]
Length = 814
Score = 44.3 bits (103), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 98/220 (44%), Gaps = 54/220 (24%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
+ ++L + V Q +++ ++ + ++ K F+ G +GK LA ++AE+
Sbjct: 501 MEEILHKRVIGQDEAVEAVSRAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAEA 560
Query: 533 VFGSTDLLFHIDMRKRNDGVSSH-SEMLMGTLKNY----------EKL------VVLVED 575
+FG + + IDM ++ + H + L+G Y EK+ VVL+++
Sbjct: 561 MFGDENAVVRIDM---SEYMERHTTSRLIGAPPGYVGYEEGGQLTEKIRRKPYSVVLLDE 617
Query: 576 IDLADPQ----FIKILADGFETENFGK------VIFVLT---------KGDSSNYEERIE 616
I+ A P+ +++L DG T+ G+ + ++T +G + R E
Sbjct: 618 IEKAHPEVFNILLQVLDDGRLTDGKGRTVDFRNTVIIMTSNVGAQSIRRGGPLGFAARSE 677
Query: 617 NQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDE 656
+D+ +M KV E + KR+ EF N RIDE
Sbjct: 678 EEDAYKDMKNKVME-----ELKRQFRPEFLN-----RIDE 707
>gi|384049297|ref|YP_005497314.1| Class III stress response ATPase, ClpC [Bacillus megaterium
WSH-002]
gi|345446988|gb|AEN92005.1| Class III stress response ATPase, ClpC [Bacillus megaterium
WSH-002]
Length = 813
Score = 44.3 bits (103), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 73/150 (48%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ ++L V Q +++ ++ + + ++ K F+ G +GK LA ++AE
Sbjct: 502 NMEEILHSRVIGQEEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 561
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
S+FG D + IDM ++ + HS L+G+ Y EK+ VVL++
Sbjct: 562 SIFGDEDAMIRIDM---SEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLD 618
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P +++L DG T++ G+ +
Sbjct: 619 EIEKAHPDVFNILLQVLEDGRLTDSKGRTV 648
>gi|260584980|ref|ZP_05852723.1| negative regulator of genetic competence ClpC/MecB [Granulicatella
elegans ATCC 700633]
gi|260157286|gb|EEW92359.1| negative regulator of genetic competence ClpC/MecB [Granulicatella
elegans ATCC 700633]
Length = 827
Score = 44.3 bits (103), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 40/222 (18%)
Query: 409 HNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKS-NEGKEVKIT-----LAL 462
H + + AKFR+++ + K + P+ D + S EG ++ + L
Sbjct: 440 HQNFDEAAKFRKKELAKRAKLE--KLVEKLES-SPQTDYIASIGEGDIAEVVSQWTGIPL 496
Query: 463 GNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGN 517
E +S +L +L VL + V Q +++ ++ + +S K FL G
Sbjct: 497 QQMEKKESERL--INLESVLHKRVIGQSEAVSAVARSIRRARSGLKDPRRPIGSFLFLGP 554
Query: 518 DTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY---------- 566
+GK LA ++AE++FG D L IDM ++ + HS L+G+ Y
Sbjct: 555 TGVGKTELAKTLAEAMFGEQDALVRIDM---SEYMEKHSVSRLVGSPPGYVGFDEGGQLT 611
Query: 567 EKL------VVLVEDIDLADPQ----FIKILADGFETENFGK 598
EK+ V+L+++I+ A P +++L DG T++ G+
Sbjct: 612 EKIRQRPYAVILLDEIEKAHPDVFNILLQVLDDGHLTDSKGR 653
>gi|227485618|ref|ZP_03915934.1| ABC superfamily ATP binding cassette transporter ATPase
[Anaerococcus lactolyticus ATCC 51172]
gi|227236372|gb|EEI86387.1| ABC superfamily ATP binding cassette transporter ATPase
[Anaerococcus lactolyticus ATCC 51172]
Length = 814
Score = 44.3 bits (103), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 23/157 (14%)
Query: 467 LSDSAKLQRSDLYKVLQENVPWQFDSI----HSIVEVLVECKSAKKATW-FLLQGNDTIG 521
L++ K + + L K+L V Q ++I H+I V K KK F+ G +G
Sbjct: 480 LTEDEKAKYAKLDKILAGTVIGQNEAIKSVAHAIKRARVGLKDPKKPIGSFIFVGPTGVG 539
Query: 522 KRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYE 567
K LA S+A+S+FGS D L +DM + + G + E L ++
Sbjct: 540 KTYLAKSLAKSLFGSEDRLIRMDMSEYMEKFAVSRMVGSPPGYVGYEEGGQLTEAVRTNP 599
Query: 568 KLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
V+L ++I+ A P ++IL DG T+ G+ I
Sbjct: 600 YSVILFDEIEKAHPDVFNLLLQILDDGRLTDGQGRTI 636
>gi|42571145|ref|NP_973646.1| heat shock-related protein [Arabidopsis thaliana]
gi|330254692|gb|AEC09786.1| heat shock-related protein [Arabidopsis thaliana]
Length = 910
Score = 44.3 bits (103), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 39/181 (21%)
Query: 161 GGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVW 220
G G +++ GDL+ N G + + N++V+ + +L+ RVW
Sbjct: 308 GPGLLLHYGDLRVF---------TNGEGNVPAA----NYIVNRISELLR----RHGRRVW 350
Query: 221 LM-ATASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTF----SQN 275
L+ AT S + Y K R P +E W LQ ++I S L + SS+ S + F S
Sbjct: 351 LIGATTSNEVYEKMMRRFPNVEKDWDLQLLTITSLKPCLPHNKSSLIGSFVPFGGFFSTT 410
Query: 276 PSQVWETKPFA-IKEEEDHKLNCCAECTSNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQ 334
PS++ PF+ K E ++ ++ T + LPPWLQ + ++ NQ
Sbjct: 411 PSEL--KLPFSGFKTEITGPVSSISDQT--------------QSTLPPWLQMTTRTDLNQ 454
Query: 335 K 335
K
Sbjct: 455 K 455
Score = 44.3 bits (103), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 23/150 (15%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSA--KKATWFLLQGNDTIGKRRLALSIAESVFG 535
+Y+ L + V Q ++ I L + + ++ W L G DT+GKRR++L +AE V+
Sbjct: 540 IYRRLTDMVSGQDEAARVISCALSQPPKSVTRRDVWLNLVGPDTVGKRRMSLVLAEIVYQ 599
Query: 536 STDLLFHIDMRKRNDGVSSHSEMLMGTLKN-----YEKL------VVLVEDIDLADPQFI 584
S +D+ G+ + + K +E + VV +E+I+ AD +
Sbjct: 600 SEHRFMAVDLGAAEQGMGGCDDPMRLRGKTMVDHIFEVMCRNPFCVVFLENIEKADEKLQ 659
Query: 585 KILADGFETENF----------GKVIFVLT 604
L+ ET F G IFV+T
Sbjct: 660 MSLSKAIETGKFMDSHGREVGIGNTIFVMT 689
>gi|406669321|ref|ZP_11076600.1| ATP-dependent chaperone ClpB [Facklamia ignava CCUG 37419]
gi|405583834|gb|EKB57765.1| ATP-dependent chaperone ClpB [Facklamia ignava CCUG 37419]
Length = 863
Score = 44.3 bits (103), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 23/146 (15%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAES 532
L + L+E V Q ++++ + E ++ ++ K FL G +GK LA ++AE+
Sbjct: 565 LDETLKERVIGQVEAVNKVYEAVLRSRAGIQDPRKPIGSFLFLGPTGVGKTELAKALAEA 624
Query: 533 VFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDL 578
+F S D + IDM + + G H E L ++ +VL+++I+
Sbjct: 625 LFNSEDHMIRIDMSEYMEKHTVSRLVGAPPGYVGHEEGGQLTEAVRRSPYTIVLLDEIEK 684
Query: 579 ADPQ----FIKILADGFETENFGKVI 600
A P +++L DG T++ G ++
Sbjct: 685 AHPDVFNILLQVLDDGRLTDSKGHLV 710
>gi|387787550|ref|YP_006252618.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae ST556]
gi|418163704|ref|ZP_12800380.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA17371]
gi|418170587|ref|ZP_12807216.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA19451]
gi|419518181|ref|ZP_14057791.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA08825]
gi|353833130|gb|EHE13242.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA17371]
gi|353838142|gb|EHE18222.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA19451]
gi|379137292|gb|AFC94083.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae ST556]
gi|379642394|gb|EIA06926.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA08825]
Length = 691
Score = 44.3 bits (103), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ + + ++ + FL G+ +GK
Sbjct: 391 SDIERLK--DMAHRLQDKVIGQDKAVEVVARAIRRNRAGFDEGNRPIGNFLFVGSTGVGK 448
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 449 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 506
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 507 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 563
>gi|381184365|ref|ZP_09892990.1| ClpC ATPase [Listeriaceae bacterium TTU M1-001]
gi|380315745|gb|EIA19239.1| ClpC ATPase [Listeriaceae bacterium TTU M1-001]
Length = 820
Score = 44.3 bits (103), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ K+L E V Q +++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 500 NMEKLLHERVIGQDEAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 559
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
S+FG D + +DM + + S+ L+G Y EK+ VVL+++
Sbjct: 560 SMFGDEDAMIRVDMSEYMEKFSTAR--LVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDE 617
Query: 576 IDLADP----QFIKILADGFETENFGKVI 600
I+ A P +++L DG T++ G+V+
Sbjct: 618 IEKAHPDVFNMLLQVLDDGRLTDSKGRVV 646
>gi|377831831|ref|ZP_09814797.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
mucosae LM1]
gi|377554322|gb|EHT16035.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
mucosae LM1]
Length = 735
Score = 44.3 bits (103), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 81/171 (47%), Gaps = 29/171 (16%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVEC-----KSAKKA 509
E K + +G+ + + KL+ DL K L+++V Q +++ + + KS +
Sbjct: 394 EEKTHIPVGDLQKQEENKLR--DLDKQLEKHVIGQNEAVDKVARAIRRNRIGLNKSGRPI 451
Query: 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY--- 566
FL G +GK +A +A+ +FGS D + DM + D S+ L+G Y
Sbjct: 452 GSFLFVGPTGVGKTEMAKQLAKLLFGSKDAMIRFDMSEYMDKTSTSK--LIGAAPGYVGY 509
Query: 567 -------EKL------VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
E++ ++L+++++ A P F++IL DG T++ G+ +
Sbjct: 510 EEAGQLTEQVRRHPYSLILLDEVEKAHPDVMHMFLQILDDGRLTDSQGRTV 560
>gi|418036954|ref|ZP_12675345.1| hypothetical protein LLCRE1631_00152 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
gi|354695099|gb|EHE94721.1| hypothetical protein LLCRE1631_00152 [Lactococcus lactis subsp.
cremoris CNCM I-1631]
Length = 816
Score = 44.3 bits (103), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 130/307 (42%), Gaps = 55/307 (17%)
Query: 336 DELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLD 395
DE + + + HQ + T S + S Y ++ P ++ LD
Sbjct: 359 DEAIAILQGLREKFEDYHQVKFTDQAIKSAVM-------LSVRYMTSR-KLPDKAIDLLD 410
Query: 396 SNS----ISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLD----- 446
+ IS K + +A+ + + S + I+ + K + VE D
Sbjct: 411 EAAAAVKISVKNQQTKRLDLEKELAEAQEELSEAVIKLDIKASRTKEKAVEKIADKIYKF 470
Query: 447 SLKSNEGKEV--KITLALGNS-------ELSDSAKLQRSDLYKVLQENVPWQFDSIHSIV 497
S+K ++ +EV + +A+ ++ +++ S + +L K L + V Q ++I ++
Sbjct: 471 SVKEDKRQEVTDQAVVAVASTLTGVPITQMTKSESDRLINLEKELHKRVVGQEEAISAVS 530
Query: 498 EVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGV 552
+ +S + F+ G +GK LA ++A+SVFGS D + +DM ++ +
Sbjct: 531 RAIRRARSGVADSRRPMGSFMFLGPTGVGKTELAKALADSVFGSEDNMIRVDM---SEFM 587
Query: 553 SSHS-EMLMGTLKNY----------EKL------VVLVEDIDLADPQ----FIKILADGF 591
HS L+G Y E++ VVL+++++ A P ++IL DGF
Sbjct: 588 EKHSTSRLIGAPPGYVGYDEGGQLTERVRNKPYSVVLLDEVEKAHPDVFNIMLQILDDGF 647
Query: 592 ETENFGK 598
T+ G+
Sbjct: 648 VTDTKGR 654
>gi|385830135|ref|YP_005867948.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactococcus
lactis subsp. lactis CV56]
gi|326406143|gb|ADZ63214.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactococcus
lactis subsp. lactis CV56]
Length = 816
Score = 44.3 bits (103), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 130/307 (42%), Gaps = 55/307 (17%)
Query: 336 DELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLD 395
DE + + + HQ + T S + S Y ++ P ++ LD
Sbjct: 359 DEAIAILQGLREKFEDYHQVKFTDQAIKSAVM-------LSVRYMTSR-KLPDKAIDLLD 410
Query: 396 SNS----ISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLD----- 446
+ IS K + +A+ + + S + I+ + K + VE D
Sbjct: 411 EAAAAVKISVKNQQTKRLDLEKELAEAQEELSEAVIKLDIKASRTKEKAVEKIADKIYKF 470
Query: 447 SLKSNEGKEV--KITLALGNS-------ELSDSAKLQRSDLYKVLQENVPWQFDSIHSIV 497
S+K ++ +EV + +A+ ++ +++ S + +L K L + V Q ++I ++
Sbjct: 471 SVKEDKRQEVTDQAVVAVASTLTGVPITQMTKSESDRLINLEKELHKRVVGQEEAISAVS 530
Query: 498 EVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGV 552
+ +S + F+ G +GK LA ++A+SVFGS D + +DM ++ +
Sbjct: 531 RAIRRARSGVADSRRPMGSFMFLGPTGVGKTELAKALADSVFGSEDNMIRVDM---SEFM 587
Query: 553 SSHS-EMLMGTLKNY----------EKL------VVLVEDIDLADPQ----FIKILADGF 591
HS L+G Y E++ VVL+++++ A P ++IL DGF
Sbjct: 588 EKHSTSRLIGAPPGYVGYDEGGQLTERVRNKPYSVVLLDEVEKAHPDVFNIMLQILDDGF 647
Query: 592 ETENFGK 598
T+ G+
Sbjct: 648 VTDTKGR 654
>gi|421504377|ref|ZP_15951319.1| ATPase [Pseudomonas mendocina DLHK]
gi|400344932|gb|EJO93300.1| ATPase [Pseudomonas mendocina DLHK]
Length = 947
Score = 44.3 bits (103), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDTIGKRRLALSIAES 532
L K L E + Q +++ ++ + + ++ +K FL G +GK LA ++AES
Sbjct: 607 LEKRLHERLVGQDEAVRAVADAVRLSRAGLREGSKPVATFLFLGPTGVGKTELAKALAES 666
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
V+GS L IDM + + H+ L+G Y EK+ V+L+++
Sbjct: 667 VYGSEGALLRIDMSEYGE---RHTVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLLLDE 723
Query: 576 IDLADPQFIKILA----DGFETENFGKVI 600
I+ A P IL DG T+ G+V+
Sbjct: 724 IEKAHPDVYNILLQVFDDGRLTDGKGRVV 752
>gi|116511437|ref|YP_808653.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactococcus lactis subsp. cremoris SK11]
gi|116107091|gb|ABJ72231.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactococcus lactis subsp. cremoris SK11]
Length = 816
Score = 44.3 bits (103), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 29/148 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
+L K L + V Q ++I ++ + +S + F+ G +GK LA ++A+
Sbjct: 510 NLEKELHKRVVGQEEAISAVSRAIRRARSGVADSRRPMGSFMFLGPTGVGKTELAKALAD 569
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
SVFGS D + +DM ++ + HS L+G Y E++ VVL++
Sbjct: 570 SVFGSEDNMIRVDM---SEFMEKHSTSRLIGAPPGYVGYDEGGQLTERVRNKPYSVVLLD 626
Query: 575 DIDLADPQ----FIKILADGFETENFGK 598
+++ A P ++IL DGF T+ G+
Sbjct: 627 EVEKAHPDVFNIMLQILDDGFVTDTKGR 654
>gi|269926323|ref|YP_003322946.1| ATP-dependent chaperone ClpB [Thermobaculum terrenum ATCC BAA-798]
gi|269789983|gb|ACZ42124.1| ATP-dependent chaperone ClpB [Thermobaculum terrenum ATCC BAA-798]
Length = 867
Score = 44.3 bits (103), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P E+I+ V +V R+ + N V++G+ A+V R+ RGDVP+ LK +I
Sbjct: 179 PVIGRDEEIRRVIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVRGDVPESLKNCRII 238
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
+ A + + E E L + ++V TS G I++ +L V
Sbjct: 239 QLDLAGMVAGTKFRGEFEERLKAVLKEV---TSSEGKIILFIDELHTVV 284
>gi|387133735|ref|YP_006299707.1| ATP-dependent chaperone protein ClpB [Prevotella intermedia 17]
gi|386376583|gb|AFJ08016.1| ATP-dependent chaperone protein ClpB [Prevotella intermedia 17]
Length = 862
Score = 44.3 bits (103), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P E+I+ V ++ R+ + N +++G+ + A+V GR+ RGDVP+ LK +
Sbjct: 177 PVIGRDEEIRRVLQILSRRTKNNPILIGEPGTGKTAIVEGLAGRIIRGDVPENLKDKQLY 236
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
+ K E E LK + +T+ G I++ ++ V
Sbjct: 237 SLDMGALVAGAKYKGEFE---ERLKSVIKEVTNAEGNIILFIDEIHTLV 282
>gi|225860377|ref|YP_002741886.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae Taiwan19F-14]
gi|298229076|ref|ZP_06962757.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae str. Canada MDR_19F]
gi|418093210|ref|ZP_12730341.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA49138]
gi|418118306|ref|ZP_12755266.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA18523]
gi|418140973|ref|ZP_12777787.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA13455]
gi|418145574|ref|ZP_12782360.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA13637]
gi|418152111|ref|ZP_12788851.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA16121]
gi|418156594|ref|ZP_12793313.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA16833]
gi|419428633|ref|ZP_13968804.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA11856]
gi|419527375|ref|ZP_14066922.1| AAA domain family protein [Streptococcus pneumoniae GA17719]
gi|421216764|ref|ZP_15673667.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2070335]
gi|225727012|gb|ACO22863.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae Taiwan19F-14]
gi|353767563|gb|EHD48097.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA49138]
gi|353791891|gb|EHD72264.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA18523]
gi|353807460|gb|EHD87731.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA13455]
gi|353816448|gb|EHD96657.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA13637]
gi|353818756|gb|EHD98954.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA16121]
gi|353825871|gb|EHE06035.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA16833]
gi|379553884|gb|EHZ18967.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA11856]
gi|379568538|gb|EHZ33518.1| AAA domain family protein [Streptococcus pneumoniae GA17719]
gi|395585802|gb|EJG46181.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2070335]
Length = 701
Score = 44.3 bits (103), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ + + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEVVARAIRRNRAGFDEGNRPIGNFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|377557267|ref|ZP_09786919.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
gastricus PS3]
gi|376165906|gb|EHS84838.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
gastricus PS3]
Length = 679
Score = 44.3 bits (103), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 27/144 (18%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAESVFGS 536
L + V Q +++ I E + +S K F+ G +GK LA ++AE +FGS
Sbjct: 373 LHQRVIGQDEAVRVISEAIRRSRSGLKDPQRPIGSFMFLGPTGVGKTELAKALAEEMFGS 432
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
D + IDM + + S+ L+G Y E++ VVL+++++ A
Sbjct: 433 RDQMIRIDMSEYMERYSTSR--LVGAAPGYVGYEEGGQLTEQVRRHPYSVVLLDEVEKAH 490
Query: 581 PQ----FIKILADGFETENFGKVI 600
P +++L DGF T++ G+ +
Sbjct: 491 PDVFNLLLQVLDDGFLTDSQGRRV 514
>gi|197303865|ref|ZP_03168900.1| hypothetical protein RUMLAC_02603 [Ruminococcus lactaris ATCC
29176]
gi|197297048|gb|EDY31613.1| ATPase family associated with various cellular activities (AAA)
[Ruminococcus lactaris ATCC 29176]
Length = 812
Score = 44.3 bits (103), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 90/189 (47%), Gaps = 27/189 (14%)
Query: 436 RKPQGVEPRLDSLKSNEGKEV-KITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIH 494
+K G+ P S+ NE EV + + S+L++S + +L K+LQ+ V Q +++
Sbjct: 464 KKQAGLHP---SVTENEVAEVVSVWTKVPVSKLTESDTERLKNLEKILQKRVIGQDEAVS 520
Query: 495 SIVEVL----VECKSAKKATW-FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRN 549
++ + V K K+ FL G +GK L+ ++AE++FG + + +DM +
Sbjct: 521 AVARAVKRGRVGLKDPKRPIGSFLFLGPTGVGKTELSKALAEALFGKEEAMIRVDMSEYM 580
Query: 550 D------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADPQ----FIKILADGF 591
+ G H E L ++ + V+L ++I+ A P +++L DG
Sbjct: 581 EKHSVSKMIGSPPGYVGHEEGGQLSDQVRTHPYSVLLFDEIEKAHPDVFNVLLQVLDDGH 640
Query: 592 ETENFGKVI 600
T++ G+ +
Sbjct: 641 ITDSQGRKV 649
>gi|218281179|ref|ZP_03487705.1| hypothetical protein EUBIFOR_00266 [Eubacterium biforme DSM 3989]
gi|218217625|gb|EEC91163.1| hypothetical protein EUBIFOR_00266 [Eubacterium biforme DSM 3989]
Length = 850
Score = 44.3 bits (103), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 116/590 (19%), Positives = 217/590 (36%), Gaps = 90/590 (15%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P ++I+ V ++ RK + N V++G+ A+V R+ +GDVP+ LK+ +I
Sbjct: 176 PIIGRDDEIRRVMQILSRKTKNNPVLIGEPGVGKTAVVEGIAWRIMKGDVPESLKEKRLI 235
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNF 186
+ + + E E LK +D + G I++ ++ +N
Sbjct: 236 ELDMGSLIAGAKYRGEFE---ERLKSILDEVKKSDGQIILFIDEI----------HNLVG 282
Query: 187 NGEIASCYNPINHLVSEVGKLVSDCNSASS---TRVWLMATASYQ-TYMKCQMRQPPLEI 242
G+ + N L + + C A++ R ++ A+ + + K Q+ QP +E
Sbjct: 283 AGKTEGSMDAANLLKPMLARGELHCIGATTFNEYRKYIEKDAALERRFQKVQVAQPSVE- 341
Query: 243 QWALQAVSIPSGGLGL--SLHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCAE 300
+SI G S H + + L + S + T F + D CA
Sbjct: 342 ----DTISILRGLKDRFESYHGVRILDEALIAAATMSDRYITDRFLPDKAIDLVDEACAT 397
Query: 301 CTSNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQKDE-LVEMRRKWNRSCHSLHQGR--- 356
E Q Q+K+L LQ +S ++D+ VE R + SL R
Sbjct: 398 LKVEMESMPQELDELQRKIL--QLQIEKTSLQKEEDKRAVERREEIEGELASLQSKRDEM 455
Query: 357 HTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSISFAESAMKPHNSSNSVA 416
H++ + N+ + A + + D+ + + A
Sbjct: 456 HSKWEDEKRGLANEKEDKQRLEKARLDLEQARNEARYEDAAKLQYG-------TIPELEA 508
Query: 417 KFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQRS 476
+ +++Q+ E L NE KI E++ +R
Sbjct: 509 RIQKEQASQK---------------EDALIQETVNEELIAKIVSRWTGVEVTRLVASERE 553
Query: 477 DLYKV---LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALS 528
L + L++ V Q +++ + + ++ K+ + F+ G +GK +A +
Sbjct: 554 KLLNLKAELEKRVVGQDEALELVTDAILRSKAQIQDENRPIGSFMFLGPTGVGKTEVAKA 613
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL----------------VV 571
+AE +F + IDM ++ + HS L+G Y +V
Sbjct: 614 LAEQLFDDERHIVRIDM---SEYMEKHSVARLIGAPPGYVGYDEGGQLTEAVRRNPYSIV 670
Query: 572 LVEDIDLADPQ----FIKILADGFETE------NFGKVIFVLTKGDSSNY 611
L ++I+ A P ++IL DG T+ +F I +LT S Y
Sbjct: 671 LFDEIEKAHPDVFNVLLQILDDGRITDSKGVTVDFKNTIIILTSNLGSQY 720
>gi|421229015|ref|ZP_15685693.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2061376]
gi|421291144|ref|ZP_15741888.1| hypothetical protein SPAR159_0330 [Streptococcus pneumoniae
GA56348]
gi|421311039|ref|ZP_15761652.1| hypothetical protein SPAR167_0349 [Streptococcus pneumoniae
GA58981]
gi|395598682|gb|EJG58883.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2061376]
gi|395896944|gb|EJH07909.1| hypothetical protein SPAR159_0330 [Streptococcus pneumoniae
GA56348]
gi|395913999|gb|EJH24848.1| hypothetical protein SPAR167_0349 [Streptococcus pneumoniae
GA58981]
Length = 701
Score = 44.3 bits (103), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ + + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEVVARAIRRNRAGFDEGNRPIGNFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|421205806|ref|ZP_15662872.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2090008]
gi|395577833|gb|EJG38367.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
pneumoniae 2090008]
Length = 701
Score = 44.3 bits (103), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ + + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEVVARAIRRNRAGFDEGNRPIGNFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|414073876|ref|YP_006999093.1| ATP-dependent Clp protease ATP-binding subunit [Lactococcus lactis
subsp. cremoris UC509.9]
gi|413973796|gb|AFW91260.1| ATP-dependent Clp protease ATP-binding subunit [Lactococcus lactis
subsp. cremoris UC509.9]
Length = 816
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 29/148 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
+L K L + V Q ++I ++ + +S + F+ G +GK LA ++A+
Sbjct: 510 NLEKELHKRVVGQEEAISAVSRAIRRARSGVADSRRPMGSFMFLGPTGVGKTELAKALAD 569
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
SVFGS D + +DM ++ + HS L+G Y E++ VVL++
Sbjct: 570 SVFGSEDNMIRVDM---SEFMEKHSTSRLIGAPPGYVGYDEGGQLTERVRNKPYSVVLLD 626
Query: 575 DIDLADPQ----FIKILADGFETENFGK 598
+++ A P ++IL DGF T+ G+
Sbjct: 627 EVEKAHPDVFNIMLQILDDGFVTDTKGR 654
>gi|315506221|ref|YP_004085108.1| ATPase AAA-2 domain-containing protein [Micromonospora sp. L5]
gi|315412840|gb|ADU10957.1| ATPase AAA-2 domain protein [Micromonospora sp. L5]
Length = 849
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 23/142 (16%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
L E + Q D++ ++ E + ++ + FL G +GK LA ++AE++FG
Sbjct: 532 LHEKIIGQDDAVSAVAEAVRRSRTGLADPDRPMGSFLFLGPTGVGKTELARALAEALFGE 591
Query: 537 TDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADPQ 582
D + +DM + + G + E L ++ VVL+++I+ A P
Sbjct: 592 ADRMVRVDMSEFQERHTVSRLVGAPPGYVGYEEAGQLTEAVRRRPYAVVLLDEIEKAHPD 651
Query: 583 ----FIKILADGFETENFGKVI 600
+++L DG T++ G+ +
Sbjct: 652 VFNILLQVLDDGRLTDSQGRTV 673
>gi|281491118|ref|YP_003353098.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactococcus
lactis subsp. lactis KF147]
gi|281374868|gb|ADA64387.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Lactococcus
lactis subsp. lactis KF147]
gi|374672634|dbj|BAL50525.1| ATP-dependent protease ATP-binding subunit [Lactococcus lactis
subsp. lactis IO-1]
Length = 816
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 130/307 (42%), Gaps = 55/307 (17%)
Query: 336 DELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLD 395
DE + + + HQ + T S + S Y ++ P ++ LD
Sbjct: 359 DEAIAILQGLREKFEDYHQVKFTDQAIKSAVM-------LSVRYMTSR-KLPDKAIDLLD 410
Query: 396 SNS----ISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLD----- 446
+ IS K + +A+ + + S + I+ + K + VE D
Sbjct: 411 EAAAAVKISVKNQQTKRLDLEKELAEAQEELSEAVIKLDIKASRTKEKAVEKIADKIYKF 470
Query: 447 SLKSNEGKEV--KITLALGNS-------ELSDSAKLQRSDLYKVLQENVPWQFDSIHSIV 497
S+K ++ +EV + +A+ ++ +++ S + +L K L + V Q ++I ++
Sbjct: 471 SVKEDKRQEVTDQAVVAVASTLTGVPITQMTKSESDRLINLEKELHKRVVGQEEAISAVS 530
Query: 498 EVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGV 552
+ +S + F+ G +GK LA ++A+SVFGS D + +DM ++ +
Sbjct: 531 RAIRRARSGVADSRRPMGSFMFLGPTGVGKTELAKALADSVFGSEDNMIRVDM---SEFM 587
Query: 553 SSHS-EMLMGTLKNY----------EKL------VVLVEDIDLADPQ----FIKILADGF 591
HS L+G Y E++ VVL+++++ A P ++IL DGF
Sbjct: 588 EKHSTSRLIGAPPGYVGYDEGGQLTERVRNKPYSVVLLDEVEKAHPDVFNIMLQILDDGF 647
Query: 592 ETENFGK 598
T+ G+
Sbjct: 648 VTDTKGR 654
>gi|260433267|ref|ZP_05787238.1| negative regulator of genetic competence ClpC/mecB [Silicibacter
lacuscaerulensis ITI-1157]
gi|260417095|gb|EEX10354.1| negative regulator of genetic competence ClpC/mecB [Silicibacter
lacuscaerulensis ITI-1157]
Length = 940
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 27/161 (16%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDT 519
+EL+ K + L + L E V Q ++I ++ + + ++ + FL G
Sbjct: 592 TELTAEEKDKLLKLEERLHERVIGQEEAIAAVADAVRLARAGLREGSGPTATFLFLGPTG 651
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL 569
+GK LA ++AE +FG D L IDM + G L+G Y EK+
Sbjct: 652 VGKTELAKTLAEVIFGDEDALLRIDMSEY--GERHAVARLVGAPPGYVGYDEGGQLTEKV 709
Query: 570 ------VVLVEDIDLADPQFIKILA----DGFETENFGKVI 600
VVL+++I+ A P IL DG T+ G+V+
Sbjct: 710 RRRPYSVVLLDEIEKAHPDVYNILLQVFDDGRLTDGKGRVV 750
>gi|340355218|ref|ZP_08677910.1| chaperone protein ClpB [Sporosarcina newyorkensis 2681]
gi|339622658|gb|EGQ27173.1| chaperone protein ClpB [Sporosarcina newyorkensis 2681]
Length = 718
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 126/615 (20%), Positives = 221/615 (35%), Gaps = 119/615 (19%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P E+I+ V + RK + N V++G+ A+V R+ +GDVP+ LK +
Sbjct: 34 PVIGRDEEIRNVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKDRKIF 93
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKV-DSLTSVGGGAIIYTGDLKWTVDQQESNNNNN 185
+ + + + E E L + ++V DS G I++ ++ V
Sbjct: 94 ELDMSALIAGAKYRGEFEERLKGVLKQVKDS----DGEIILFIDEIHTIVG--------- 140
Query: 186 FNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMAT----ASYQTYMKCQMRQPPLE 241
G+ + N L + + C A++ + M A + + + +R+P +E
Sbjct: 141 -AGKTEGAMDAGNMLKPMLARGELYCIGATTLDEYRMYIEKDPALERRFQQVMVREPSVE 199
Query: 242 IQWALQAVSIPSG---GLGLSLHSSSVHESRLTFSQNPSQVWETKPFA------------ 286
VSI G L H +H+ L + S + T+ F
Sbjct: 200 -----DTVSILRGLKERFELH-HGVRIHDRALVAAATLSDRYLTERFMPDKAIDLIDEAS 253
Query: 287 --IKEEED---HKLNCCAECTSNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQKDELVEM 341
I+ E D +L+ E E Q + + + L KD +M
Sbjct: 254 AMIRTEIDSMPQELDAVTRRIMQLEIEEQALRKEKDSMSQSRLVTLREELQQLKDSSKDM 313
Query: 342 RRKWNRSCHSLHQ---GRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNS 398
R +W+ +L + R ++ L + Q+ + + Y P
Sbjct: 314 REQWDSEKTALKEVQSKREELDRYRRELEDAQARFDLNKAAELQYGKIPELE------KE 367
Query: 399 ISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGKEVKI 458
+ ES P S + R + + I T P K EG
Sbjct: 368 LKALES---PLEGSQDLRLLREEVTEEEIASIVARWTGIP--------VTKLVEG----- 411
Query: 459 TLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFL 513
+ KL R L++ L+E V Q +++ + E + ++ K FL
Sbjct: 412 ----------EREKLLR--LHETLKERVIGQDNAVQLVTEAVWRARAGIQDPNKPIGSFL 459
Query: 514 LQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY------ 566
G +GK LA ++A ++F S D IDM ++ + HS L+G Y
Sbjct: 460 FLGPTGVGKTELAKTLAATLFDSEDHFVRIDM---SEYMEKHSVSRLVGAPPGYIGYEEG 516
Query: 567 ----------EKLVVLVEDIDLADPQ----FIKILADGFETE------NFGKVIFVLTKG 606
VVL+++I+ A P ++IL DG T+ NF + ++T
Sbjct: 517 GQLTEAVRRNPYAVVLLDEIEKAHPDVANILLQILDDGRITDSQGRLVNFTNTVVIMTSN 576
Query: 607 DSSNY--EERIENQD 619
S Y E +E++D
Sbjct: 577 IGSAYLLEGNLEDED 591
>gi|331702088|ref|YP_004399047.1| ATPase AAA-2 domain-containing protein [Lactobacillus buchneri NRRL
B-30929]
gi|329129431|gb|AEB73984.1| ATPase AAA-2 domain protein [Lactobacillus buchneri NRRL B-30929]
Length = 830
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L K+L + V Q ++I ++ + +S K F+ G +GK LA ++AE
Sbjct: 513 NLEKILHKRVVGQEEAISAVSRSIRRARSGLKDPNRPIGSFMFLGPTGVGKTELAKAVAE 572
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
+VFGS + + +DM + + S+ L+G+ Y EK+ VVL ++
Sbjct: 573 AVFGSEEDMIRVDMSEFMEKYSTSR--LIGSAPGYVGYDEGGQLTEKVRQKPYSVVLFDE 630
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG+ T+ G+ I
Sbjct: 631 VEKAHPDVFNLLLQVLDDGYLTDAKGRKI 659
>gi|429769570|ref|ZP_19301670.1| negative regulator of genetic competence ClpC/MecB [Brevundimonas
diminuta 470-4]
gi|429186626|gb|EKY27563.1| negative regulator of genetic competence ClpC/MecB [Brevundimonas
diminuta 470-4]
Length = 941
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 29/162 (17%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDT 519
+EL+ K + L + L E V Q ++I ++ + + ++ + FL G
Sbjct: 573 TELTTEEKDKLLKLEEKLHERVIGQEEAIRAVADAVRLARAGLREGSGPTATFLFLGPTG 632
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EK 568
+GK LA ++AE +FG D + IDM + + HS L+G Y EK
Sbjct: 633 VGKTELAKTLAEVIFGDQDAMIRIDMSEYGE---RHSVARLVGAPPGYVGYDEGGQLTEK 689
Query: 569 L------VVLVEDIDLADPQFIKILA----DGFETENFGKVI 600
+ VVL+++I+ A P IL DG T+ G+V+
Sbjct: 690 VRRRPYSVVLLDEIEKAHPDVYNILLQVFDDGRLTDGKGRVV 731
>gi|410461714|ref|ZP_11315360.1| Class III stress response-related ATPase, ClpC [Bacillus
azotoformans LMG 9581]
gi|409925481|gb|EKN62692.1| Class III stress response-related ATPase, ClpC [Bacillus
azotoformans LMG 9581]
Length = 807
Score = 44.3 bits (103), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 29/146 (19%)
Query: 481 VLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAESVFG 535
+L V Q +++ +I + + +S K F+ G +GK LA ++AE++FG
Sbjct: 507 ILHSRVIGQEEAVKAIAKAIRRARSGLKDPKRPIGSFIFLGPTGVGKTELARALAEAMFG 566
Query: 536 STDLLFHIDMRKRNDGVSSH-SEMLMGTLKNY----------EKL------VVLVEDIDL 578
D L IDM ++ + H + L+G+ Y EK+ V+L+++I+
Sbjct: 567 DEDALIRIDM---SEYMEKHTTSRLVGSPPGYVGHEEGGQLTEKVRRKPFSVILLDEIEK 623
Query: 579 ADPQ----FIKILADGFETENFGKVI 600
A P+ +++L DG T++ G+ +
Sbjct: 624 AHPEVFNILLQVLEDGRLTDSKGRTV 649
>gi|406027561|ref|YP_006726393.1| ATPase/chaperone ClpC [Lactobacillus buchneri CD034]
gi|405126050|gb|AFS00811.1| ATPase/chaperone ClpC [Lactobacillus buchneri CD034]
Length = 830
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L K+L + V Q ++I ++ + +S K F+ G +GK LA ++AE
Sbjct: 513 NLEKILHKRVVGQEEAISAVSRSIRRARSGLKDPNRPIGSFMFLGPTGVGKTELAKAVAE 572
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
+VFGS + + +DM + + S+ L+G+ Y EK+ VVL ++
Sbjct: 573 AVFGSEEDMIRVDMSEFMEKYSTSR--LIGSAPGYVGYDEGGQLTEKVRQKPYSVVLFDE 630
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG+ T+ G+ I
Sbjct: 631 VEKAHPDVFNLLLQVLDDGYLTDAKGRKI 659
>gi|348172557|ref|ZP_08879451.1| Clp protease ATP binding subunit [Saccharopolyspora spinosa NRRL
18395]
Length = 829
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 72/159 (45%), Gaps = 23/159 (14%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDT 519
S L+ + K++ L + L + V Q D++ ++ + +S + FL G
Sbjct: 507 SRLTAAEKVRLQGLEQELHQRVVGQDDAVRALARAVRRSRSGLGDPDRPVGSFLFLGPTG 566
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSEM--LMGTLKN 565
+GK LA ++AE++FG + +DM + + G H E L ++
Sbjct: 567 VGKTELAKALAEALFGDEQRMVRLDMSEFQERHTASRLVGAPPGYVGHGEPGELTEAVRR 626
Query: 566 YEKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
+ V+L+++++ A P +++L DG T+ G+ +
Sbjct: 627 HPYSVILLDEVEKAHPDVFNTLLQVLDDGRLTDGQGRTV 665
>gi|326802961|ref|YP_004320779.1| negative regulator of genetic competence ClpC/MecB [Aerococcus
urinae ACS-120-V-Col10a]
gi|326651240|gb|AEA01423.1| negative regulator of genetic competence ClpC/MecB [Aerococcus
urinae ACS-120-V-Col10a]
Length = 839
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 76/160 (47%), Gaps = 27/160 (16%)
Query: 466 ELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTI 520
ELS S + L L + V Q ++++++ + +S + F+ G +
Sbjct: 502 ELSQSDNERLIHLEDRLHDRVKGQDEAVNAVARAIKRSRSGLGQRNRPIGSFMFLGPTGV 561
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL- 569
GK LA + AE++FGS + L +DM + + SS ++G+ Y EK+
Sbjct: 562 GKTELAKTFAETLFGSEEALIRLDMSEYMEKYSSSR--MIGSAPGYVGYEEGGQLTEKIR 619
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
+VL ++I+ A P +++L DG+ T++ G+++
Sbjct: 620 QHPYSIVLFDEIEKAHPDVFDLLLQVLDDGYITDSKGRMV 659
>gi|302867374|ref|YP_003836011.1| ATPase AAA-2 domain-containing protein [Micromonospora aurantiaca
ATCC 27029]
gi|302570233|gb|ADL46435.1| ATPase AAA-2 domain protein [Micromonospora aurantiaca ATCC 27029]
Length = 849
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 23/142 (16%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
L E + Q D++ ++ E + ++ + FL G +GK LA ++AE++FG
Sbjct: 532 LHEKIIGQDDAVSAVAEAVRRSRTGLADPDRPMGSFLFLGPTGVGKTELARALAEALFGE 591
Query: 537 TDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADPQ 582
D + +DM + + G + E L ++ VVL+++I+ A P
Sbjct: 592 ADRMVRVDMSEFQERHTVSRLVGAPPGYVGYEEAGQLTEAVRRRPYAVVLLDEIEKAHPD 651
Query: 583 ----FIKILADGFETENFGKVI 600
+++L DG T++ G+ +
Sbjct: 652 VFNILLQVLDDGRLTDSQGRTV 673
>gi|406837813|ref|ZP_11097407.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactobacillus
vini DSM 20605]
Length = 821
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 71/147 (48%), Gaps = 27/147 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L K+L + V Q ++ ++ + +S K F+ G +GK LA ++AE
Sbjct: 502 ELEKILHQRVIGQQQAVSAVSRAIRRARSGLKDPNRPIGSFMFLGPTGVGKTELAKALAE 561
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS + + IDM + + S+ L+G+ Y EK+ VVL ++
Sbjct: 562 AMFGSENAIIRIDMSEYMEKYSTSR--LVGSPPGYVGYDEGGQLTEKVRQHPYSVVLFDE 619
Query: 576 IDLADPQ----FIKILADGFETENFGK 598
I+ A P +++L DG+ T++ G+
Sbjct: 620 IEKAHPDVFNILLQVLDDGYLTDSKGR 646
>gi|390943762|ref|YP_006407523.1| chaperone ATPase [Belliella baltica DSM 15883]
gi|390417190|gb|AFL84768.1| ATPase with chaperone activity, ATP-binding subunit [Belliella
baltica DSM 15883]
Length = 843
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 100/239 (41%), Gaps = 61/239 (25%)
Query: 482 LQENVPWQFDSIHSIVEVL----VECKSAKKATW-FLLQGNDTIGKRRLALSIAESVFGS 536
L+ V Q D+I + + + V K KK F+ G +GK LA +A +F
Sbjct: 533 LKGKVVGQEDAIKKLTKAIQRTRVGLKDPKKPIGSFIFLGPTGVGKTELAKMLATYLFDK 592
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
D L IDM + + S L+G Y EK+ VVL+++I+ A
Sbjct: 593 EDSLVRIDMSEYMEKFSVSR--LVGAPPGYVGYEEGGQLTEKVRRKPYSVVLLDEIEKAH 650
Query: 581 PQ----FIKILADGFETENFGKVIFVLTKGDSSNYEERIENQDSVINMTLKVNERN-QNF 635
P +++L DG T+ G+ R++ ++++I MT + R+ ++F
Sbjct: 651 PDVFNILLQVLDDGILTDGLGR---------------RVDFRNTIIIMTSNIGVRDLKDF 695
Query: 636 DHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQ--------SSFNTLD 686
A FANK KS +DE V + S KK FS + FN+LD
Sbjct: 696 G----AGIGFANKAKSDNMDE------VMKSTIQSALKKAFSPEFLNRLDDVVVFNSLD 744
>gi|310644235|ref|YP_003948994.1| ATPase AAA [Paenibacillus polymyxa SC2]
gi|309249186|gb|ADO58753.1| ATPase AAA-2 domain-containing protein [Paenibacillus polymyxa SC2]
gi|392304928|emb|CCI71291.1| ATP-dependent Clp protease ATP-binding subunit clpC [Paenibacillus
polymyxa M1]
Length = 814
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ ++L E V Q +++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 501 NMEQLLHERVIGQEEAVKAVSRAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
S+FG + + IDM ++ + HS L+G Y EK+ VVL++
Sbjct: 561 SMFGDENAVIRIDM---SEYMEKHSTSRLVGAPPGYVGYEEGGQLTEKVRRKPYSVVLLD 617
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P+ +++L DG T++ G+V+
Sbjct: 618 EIEKAHPEVFNILLQVLEDGRLTDSKGRVV 647
>gi|449019356|dbj|BAM82758.1| ATP-dependent Clp protease, ATP-binding subunit ClpB
[Cyanidioschyzon merolae strain 10D]
Length = 886
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 3/116 (2%)
Query: 60 ALFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQE 119
A + P E+I+ +V R+ + N V++G+ A+V R+ RGDVP+
Sbjct: 158 AALNRLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIARGDVPES 217
Query: 120 LKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
LK V+ + + E E L + R V+ L G I++ +L V
Sbjct: 218 LKNKRVVALDLGALVAGAKFRGEFEERLRSVLRDVEELQ---GSVILFIDELHMLV 270
>gi|374709551|ref|ZP_09713985.1| ATPase AAA [Sporolactobacillus inulinus CASD]
Length = 734
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 24/118 (20%)
Query: 504 KSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGT 562
KS + FL G +GK LA ++AE +FG D + IDM ++ + HS L+G
Sbjct: 472 KSTRPIGSFLFVGPTGVGKTELAKTLAEEMFGERDAMIRIDM---SEYMEKHSVSRLIGA 528
Query: 563 LKNY----------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
Y EK+ ++L+++I+ A P F++IL DG T++ G+ +
Sbjct: 529 PPGYVGHDEAGQLTEKIRRKPYSIILLDEIEKAHPDVMHIFLQILDDGRLTDSQGRTV 586
>gi|418061731|ref|ZP_12699572.1| ATPase AAA-2 domain protein [Methylobacterium extorquens DSM 13060]
gi|373564717|gb|EHP90805.1| ATPase AAA-2 domain protein [Methylobacterium extorquens DSM 13060]
Length = 964
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 29/162 (17%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDT 519
+EL+ K + L + L E V Q ++I ++ + + ++ + FL G
Sbjct: 600 TELTAEEKDKLLKLEEKLHERVIGQEEAIRAVADAVRLARAGLREGSGPTATFLFLGPTG 659
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EK 568
+GK LA ++AE +FG D + IDM + + HS L+G Y EK
Sbjct: 660 VGKTELAKTLAEVIFGDQDAMIRIDMSEYGE---RHSVARLVGAPPGYVGYDEGGQLTEK 716
Query: 569 L------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
+ VVL+++I+ A P +++ DG T+ G+V+
Sbjct: 717 VRRRPYSVVLLDEIEKAHPDVYNILLQVFDDGRLTDGKGRVV 758
>gi|338732349|ref|YP_004670822.1| putative ATP-dependent Clp protease ATP-binding subunit [Simkania
negevensis Z]
gi|336481732|emb|CCB88331.1| putative ATP-dependent Clp protease ATP-binding subunit [Simkania
negevensis Z]
Length = 853
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 23/146 (15%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
+ ++L++N+ Q D++ I L K+ K FLL G +GK LA +A
Sbjct: 519 MQELLKQNIIGQSDAVEVICRSLRRSKADIKDPNRPIGAFLLLGPTGVGKTLLAKQLAIH 578
Query: 533 VFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDL 578
+FG D L +DM + + G H E L ++ VVL ++I+
Sbjct: 579 MFGGEDALIQVDMSEYMEKFAVSRMTGSPPGYVGHEEGGQLTEQVRQRPYAVVLFDEIEK 638
Query: 579 ADPQ----FIKILADGFETENFGKVI 600
A P ++IL DG T++ G+ +
Sbjct: 639 AHPDVMNLLLQILEDGHLTDSLGRKV 664
>gi|303255214|ref|ZP_07341288.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae BS455]
gi|302597847|gb|EFL64919.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
pneumoniae BS455]
Length = 701
Score = 43.9 bits (102), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + + ++ + FL G +GK LA +A
Sbjct: 408 DMGHRLQTKVIGQDKAVEAVAKAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 467
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 468 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRRNPYSIVLLD 525
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 526 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNTGFGYE 573
>gi|15672624|ref|NP_266798.1| ATP-dependent protease ATP-binding subunit [Lactococcus lactis
subsp. lactis Il1403]
gi|12723546|gb|AAK04740.1|AE006297_3 ATP-dependent protease ATP-binding subunit [Lactococcus lactis
subsp. lactis Il1403]
Length = 816
Score = 43.9 bits (102), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 29/148 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
+L K L + V Q ++I ++ + +S + F+ G +GK LA ++A+
Sbjct: 510 NLEKELHKRVVGQEEAISAVSRAIRRARSGVADSRRPMGSFMFLGPTGVGKTELAKALAD 569
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
SVFGS D + +DM ++ + HS L+G Y E++ VVL++
Sbjct: 570 SVFGSEDNMIRVDM---SEFMEKHSTSRLIGAPPGYVGYDEGGQLTERVRNKPYSVVLLD 626
Query: 575 DIDLADPQ----FIKILADGFETENFGK 598
+++ A P ++IL DGF T+ G+
Sbjct: 627 EVEKAHPDVFNIMLQILDDGFVTDTKGR 654
>gi|375310836|ref|ZP_09776101.1| ATPase aaa-2 domain-containing protein [Paenibacillus sp. Aloe-11]
gi|375077204|gb|EHS55447.1| ATPase aaa-2 domain-containing protein [Paenibacillus sp. Aloe-11]
Length = 814
Score = 43.9 bits (102), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ ++L E V Q +++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 501 NMEQLLHERVIGQEEAVKAVSRAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
S+FG + + IDM ++ + HS L+G Y EK+ VVL++
Sbjct: 561 SMFGDENAVIRIDM---SEYMEKHSTSRLVGAPPGYVGYEEGGQLTEKVRRKPYSVVLLD 617
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P+ +++L DG T++ G+V+
Sbjct: 618 EIEKAHPEVFNILLQVLEDGRLTDSKGRVV 647
>gi|385838925|ref|YP_005876555.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Lactococcus
lactis subsp. cremoris A76]
gi|358750153|gb|AEU41132.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Lactococcus
lactis subsp. cremoris A76]
Length = 816
Score = 43.9 bits (102), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 29/148 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
+L K L + V Q ++I ++ + +S + F+ G +GK LA ++A+
Sbjct: 510 NLEKELHKRVVGQEEAISAVSRAIRRARSGVADSRRPMGSFIFLGPTGVGKTELAKALAD 569
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
SVFGS D + +DM ++ + HS L+G Y E++ VVL++
Sbjct: 570 SVFGSEDNMIRVDM---SEFMEKHSTSRLIGAPPGYVGYDEGGQLTERVRNKPYSVVLLD 626
Query: 575 DIDLADPQ----FIKILADGFETENFGK 598
+++ A P ++IL DGF T+ G+
Sbjct: 627 EVEKAHPDVFNIMLQILDDGFVTDTKGR 654
>gi|295425928|ref|ZP_06818605.1| ATP-dependent Clp protease [Lactobacillus amylolyticus DSM 11664]
gi|295064358|gb|EFG55289.1| ATP-dependent Clp protease [Lactobacillus amylolyticus DSM 11664]
Length = 700
Score = 43.9 bits (102), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 28/161 (17%)
Query: 465 SEL-SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK----SAKKATWFLLQGNDT 519
SEL +D AK + DL K L+ V Q +I I + + + S + FLL G
Sbjct: 377 SELHADEAK-KNLDLAKKLKAVVIDQDKAIDVITDAIARKQVFKDSDRPTGSFLLTGPTG 435
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL 569
+GK LA +A ++FGS D +DM + D ++ + L+G+ Y EK+
Sbjct: 436 VGKTELAKQLAINLFGSKDHFIRLDMSEYQDEMAVNK--LIGSAPGYVGYGEGGQLTEKV 493
Query: 570 ------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++L ++I+ A+PQ ++I+ DG T++ G+ +
Sbjct: 494 RHQPYCLILFDEIEKANPQIFNALLQIMDDGRLTDSQGRTV 534
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 80/180 (44%), Gaps = 16/180 (8%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P E I V E+ R+K+ N V++G A+V R+ G+VP ++K H+I
Sbjct: 76 PVIGRDEQINEVIEILSRRKKNNPVLIGPAGVGKTAIVEGLAERIAEGNVPSKMKDMHII 135
Query: 127 KFHF----APVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNN 182
+ A +LR +E+++ + + K+ D +++ +L V +++
Sbjct: 136 SININDMVAGSSLRGSFEEKLKEVIDQAKKNPD--------IVLFIDELHNIVGAGSTDS 187
Query: 183 NNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEI 242
N NG+ A+ P L S KL+ ++ R+ +A + + Q+ +P ++
Sbjct: 188 ETN-NGDAANILKPA--LASGDLKLIGATTTSEYQRIE-KDSALARRFQPVQVPEPTTDV 243
>gi|242372741|ref|ZP_04818315.1| ClpB ATPase [Staphylococcus epidermidis M23864:W1]
gi|242349514|gb|EES41115.1| ClpB ATPase [Staphylococcus epidermidis M23864:W1]
Length = 818
Score = 43.9 bits (102), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L L E V Q D+++SI + + ++ K F+ G +GK LA ++AE
Sbjct: 501 NLEDTLHERVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
S+FG D + +DM ++ + H+ L+G Y EK+ V+L +
Sbjct: 561 SMFGEDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFD 617
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P +++L DG T+ G+ +
Sbjct: 618 EIEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|241889359|ref|ZP_04776660.1| negative regulator of genetic competence ClpC/MecB [Gemella
haemolysans ATCC 10379]
gi|241863902|gb|EER68283.1| negative regulator of genetic competence ClpC/MecB [Gemella
haemolysans ATCC 10379]
Length = 871
Score = 43.9 bits (102), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 32/174 (18%)
Query: 468 SDSAKLQR-SDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIG 521
+D +L R S+L +L V Q ++ ++I E ++ K+ + FL G +G
Sbjct: 558 ADEEELSRLSNLKSILATKVIGQMEATNTIAEAVIRSKTGFRNPKRPIGVFLFLGTSGVG 617
Query: 522 KRRLALSIAESVFGSTDLLFHIDMRKRND---------------GVSSHSEMLMGTLKNY 566
K A ++E + GS D L +DM + G S +L +KN
Sbjct: 618 KTETAKVLSEELTGSVDDLIRLDMSEYQQEHEVAKLIGAPPGYVGFRSGG-ILTRAVKNN 676
Query: 567 EKLVVLVEDIDLADPQF----IKILADGFETENFGK------VIFVLTKGDSSN 610
K VVL+++I+ A P+ +++ DG T+ G+ I +LT SN
Sbjct: 677 PKSVVLLDEIEKAHPRIYDLMLQVFDDGILTDGMGERVDFSNTIIILTSNLGSN 730
>gi|417311937|ref|ZP_12098654.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA04375]
gi|418226961|ref|ZP_12853582.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 3063-00]
gi|419437312|ref|ZP_13977388.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA13499]
gi|327390755|gb|EGE89095.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA04375]
gi|353884166|gb|EHE63968.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 3063-00]
gi|379541448|gb|EHZ06614.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA13499]
Length = 701
Score = 43.9 bits (102), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + + ++ + FL G +GK LA +A
Sbjct: 408 DMGHRLQTKVIGQDKAVEAVAKAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 467
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 468 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNNNTLTERVRRNPYSIVLLD 525
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 526 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|315651740|ref|ZP_07904745.1| ABC superfamily ATP binding cassette transporter ABC protein
[Lachnoanaerobaculum saburreum DSM 3986]
gi|315485995|gb|EFU76372.1| ABC superfamily ATP binding cassette transporter ABC protein
[Lachnoanaerobaculum saburreum DSM 3986]
Length = 831
Score = 43.9 bits (102), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 31/159 (19%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVL----VECKSAKKATW-FLLQGNDTIGK 522
+DS +L ++L KVL E V Q +++ ++ + V K K+ FL G +GK
Sbjct: 499 NDSQRL--NNLEKVLHERVVGQDEAVSAVARAIRRGRVGLKDPKRPIGSFLFLGPTGVGK 556
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL-- 569
L+ ++A S+FGS + L +DM ++ + HS ++G+ Y EK+
Sbjct: 557 TELSKALAYSIFGSENALIRVDM---SEYMEKHSVSRMVGSPPGYVGYEEGGQLSEKVRR 613
Query: 570 ----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
V+L ++I+ A P +++L DG T++ G+++
Sbjct: 614 NPYSVILFDEIEKAHPDVFNILLQVLDDGHITDSSGRMV 652
>gi|257125337|ref|YP_003163451.1| ATPase AAA [Leptotrichia buccalis C-1013-b]
gi|257049276|gb|ACV38460.1| ATPase AAA-2 domain protein [Leptotrichia buccalis C-1013-b]
Length = 719
Score = 43.9 bits (102), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 30/136 (22%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ D + +DM + +D + L+GT Y
Sbjct: 443 FLFVGPTGVGKTELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 500
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ ++L+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 501 NNNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 560
Query: 605 KGDSSNYEE-RIENQD 619
YE+ +EN D
Sbjct: 561 SNAGFGYEKGLVENAD 576
>gi|417935816|ref|ZP_12579133.1| ATPase, AAA family [Streptococcus infantis X]
gi|343402725|gb|EGV15230.1| ATPase, AAA family [Streptococcus infantis X]
Length = 700
Score = 43.9 bits (102), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + + ++ + FL G +GK LA +A
Sbjct: 407 DMGHRLQTKVIGQDKAVEAVAKAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 466
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 467 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNNNTLTERVRRNPYSIVLLD 524
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 525 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 572
>gi|322387252|ref|ZP_08060862.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
infantis ATCC 700779]
gi|419843414|ref|ZP_14366728.1| ATPase, AAA family [Streptococcus infantis ATCC 700779]
gi|321141781|gb|EFX37276.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
infantis ATCC 700779]
gi|385702880|gb|EIG40016.1| ATPase, AAA family [Streptococcus infantis ATCC 700779]
Length = 700
Score = 43.9 bits (102), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + + ++ + FL G +GK LA +A
Sbjct: 407 DMGHRLQTKVIGQDKAVEAVAKAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 466
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 467 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNNNTLTERVRRNPYSIVLLD 524
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 525 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 572
>gi|418077869|ref|ZP_12715093.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 4027-06]
gi|418080025|ref|ZP_12717241.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 6735-05]
gi|353748891|gb|EHD29542.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 4027-06]
gi|353754344|gb|EHD34957.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae 6735-05]
Length = 701
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIDQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|307708185|ref|ZP_07644652.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
mitis NCTC 12261]
gi|307615631|gb|EFN94837.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
mitis NCTC 12261]
Length = 701
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + + ++ + FL G +GK LA +A
Sbjct: 408 DMGHRLQTKVIGQDKAVEAVAKAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 467
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 468 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNNNTLTERVRRNPYSIVLLD 525
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 526 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|395499223|ref|ZP_10430802.1| type VI secretion ATPase, ClpV1 family protein [Pseudomonas sp.
PAMC 25886]
Length = 878
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 19 SASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHALFSSQKPASVSKEDIKLV 78
+AS FQ G + +P + EA + Q A S P E+I+ V
Sbjct: 163 TASDGFQVPGEDTGAL--APAAMGKQEALKRFTVDLTAQ--ARDSKMDPIVGRDEEIRQV 218
Query: 79 FEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKF 128
++ +R+++ N ++VG+ A+V F R+ RGDVP L+ ++
Sbjct: 219 IDILMRRRQNNPILVGEAGVGKTAVVEGFAQRIARGDVPPSLRDVQLLAL 268
>gi|390456410|ref|ZP_10241938.1| ATPase AAA [Paenibacillus peoriae KCTC 3763]
Length = 814
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ ++L E V Q +++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 501 NMEQLLHERVIGQDEAVKAVSRAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
S+FG + + IDM ++ + HS L+G Y EK+ VVL++
Sbjct: 561 SMFGDENAVIRIDM---SEYMEKHSTSRLVGAPPGYVGYEEGGQLTEKVRRKPYSVVLLD 617
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P+ +++L DG T++ G+V+
Sbjct: 618 EIEKAHPEVFNILLQVLEDGRLTDSKGRVV 647
>gi|385262363|ref|ZP_10040469.1| ATPase, AAA family [Streptococcus sp. SK643]
gi|385190670|gb|EIF38110.1| ATPase, AAA family [Streptococcus sp. SK643]
Length = 700
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + + ++ + FL G +GK LA +A
Sbjct: 407 DMGHRLQTKVIGQDKAVEAVAKAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 466
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 467 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNNNTLTERVRRNPYSIVLLD 524
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 525 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 572
>gi|419516050|ref|ZP_14055668.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA02506]
gi|379640053|gb|EIA04592.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA02506]
Length = 701
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + + ++ + FL G +GK LA +A
Sbjct: 408 DMGHRLQTKVIGQDKAVEAVAKAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 467
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 468 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNNNTLTERVRRNPYSIVLLD 525
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 526 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|153011782|ref|YP_001372995.1| ATPase [Ochrobactrum anthropi ATCC 49188]
gi|151563670|gb|ABS17166.1| ATPase AAA-2 domain protein [Ochrobactrum anthropi ATCC 49188]
Length = 964
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 29/162 (17%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDT 519
+EL+ K + L + L E V Q ++I ++ + + ++ + FL G
Sbjct: 600 TELTTEEKDKLLKLEEKLHERVIGQEEAIRAVADAVRLARAGLREGRGPTATFLFLGPTG 659
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EK 568
+GK LA ++AE +FG D + IDM + + HS L+G Y EK
Sbjct: 660 VGKTELAKTLAEVIFGDQDAIIRIDMSEYGE---RHSVARLVGAPPGYVGYDEGGQLTEK 716
Query: 569 L------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
+ VVL+++I+ A P +++ DG T+ G+V+
Sbjct: 717 VRRRPYSVVLLDEIEKAHPDVYNILLQVFDDGRLTDGKGRVV 758
>gi|308071007|ref|YP_003872612.1| Negative regulator of genetic competence clpC/mecB [Paenibacillus
polymyxa E681]
gi|305860286|gb|ADM72074.1| Negative regulator of genetic competence clpC/mecB [Paenibacillus
polymyxa E681]
Length = 814
Score = 43.9 bits (102), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ ++L E V Q +++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 501 NMEELLHERVIGQDEAVKAVSRAIRRARAGLKDPKRPMGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
S+FG + + IDM ++ + HS L+G Y EK+ VVL++
Sbjct: 561 SMFGDENAVIRIDM---SEYMEKHSTSRLVGAPPGYVGYEEGGQLTEKVRRKPYSVVLLD 617
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P+ +++L DG T++ G+V+
Sbjct: 618 EIEKAHPEVFNILLQVLEDGRLTDSKGRVV 647
>gi|419720434|ref|ZP_14247667.1| negative regulator of genetic competence ClpC/MecB
[Lachnoanaerobaculum saburreum F0468]
gi|383303387|gb|EIC94839.1| negative regulator of genetic competence ClpC/MecB
[Lachnoanaerobaculum saburreum F0468]
Length = 831
Score = 43.9 bits (102), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 31/159 (19%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVL----VECKSAKKATW-FLLQGNDTIGK 522
+DS +L ++L KVL E V Q +++ ++ + V K K+ FL G +GK
Sbjct: 499 NDSQRL--NNLEKVLHERVVGQDEAVSAVARAIRRGRVGLKDPKRPIGSFLFLGPTGVGK 556
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL-- 569
L+ ++A S+FGS + L +DM ++ + HS ++G+ Y EK+
Sbjct: 557 TELSKALAYSIFGSENALIRVDM---SEYMEKHSVSRMVGSPPGYVGYEEGGQLSEKVRR 613
Query: 570 ----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
V+L ++I+ A P +++L DG T++ G+++
Sbjct: 614 NPYSVILFDEIEKAHPDVFNILLQVLDDGHITDSSGRMV 652
>gi|325663437|ref|ZP_08151847.1| hypothetical protein HMPREF0490_02588 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470336|gb|EGC73567.1| hypothetical protein HMPREF0490_02588 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 814
Score = 43.9 bits (102), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 31/159 (19%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVL----VECKSAKKATW-FLLQGNDTIGK 522
S+SA+L++ L + LQ+ V Q +++ ++ + + V KS + FL G +GK
Sbjct: 496 SESARLRK--LEQTLQKRVIGQEEAVTAVAKAVKRGRVGLKSPNRPIGSFLFLGPTGVGK 553
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL-- 569
L+ ++AE++FG D + +DM ++ + HS ++G+ Y EK+
Sbjct: 554 TELSKALAEALFGQEDAMIRVDM---SEYMEKHSVSKMIGSPPGYVGHEEGGQLSEKVRR 610
Query: 570 ----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
V+L ++I+ A P +++L DG T++ G+ I
Sbjct: 611 NPYAVILFDEIEKAHPDVFNILLQVLDDGHITDSQGRKI 649
>gi|296275770|ref|ZP_06858277.1| ClpA-related protein [Staphylococcus aureus subsp. aureus MR1]
Length = 567
Score = 43.9 bits (102), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 251 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 310
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 311 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 367
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 368 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 396
>gi|386649475|gb|AFJ15543.1| Clp-like ATP-dependent protease, partial [Lactobacillus
delbrueckii]
Length = 562
Score = 43.9 bits (102), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D + L+GT Y
Sbjct: 383 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 440
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
EK+ ++L+++I+ ADPQ I ++L DG T+ G +
Sbjct: 441 NSNTLTEKVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTV 490
>gi|251799676|ref|YP_003014407.1| ATPase AAA [Paenibacillus sp. JDR-2]
gi|247547302|gb|ACT04321.1| ATPase AAA-2 domain protein [Paenibacillus sp. JDR-2]
Length = 817
Score = 43.9 bits (102), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 29/146 (19%)
Query: 481 VLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAESVFG 535
+L + V Q D++ ++ + ++ K F+ G +GK LA ++AE++FG
Sbjct: 505 ILHDRVIGQEDAVKAVSRAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAEAMFG 564
Query: 536 STDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVEDIDL 578
+ + IDM ++ + HS L+G Y EK+ VVL+++I+
Sbjct: 565 DENAVIRIDM---SEYMEKHSTSRLVGAPPGYVGYEEGGQLTEKVRRKPYSVVLLDEIEK 621
Query: 579 ADPQ----FIKILADGFETENFGKVI 600
A P+ +++L DG T++ G+V+
Sbjct: 622 AHPEVFNILLQVLEDGRLTDSKGRVV 647
>gi|403511395|ref|YP_006643033.1| sigma-54 interaction domain protein [Nocardiopsis alba ATCC
BAA-2165]
gi|402800569|gb|AFR07979.1| sigma-54 interaction domain protein [Nocardiopsis alba ATCC
BAA-2165]
Length = 827
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 77/159 (48%), Gaps = 23/159 (14%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDT 519
S+L+ + + + +L +VL + V Q +++ ++ E + ++ + FL G
Sbjct: 511 SQLTQAERDRLVNLEEVLHDRVIGQDEAVTAVSEAIRRNRAGLGDPDRPVGSFLFLGPTG 570
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKN 565
+GK LA ++AE++FGS D + +DM + + G + E L ++
Sbjct: 571 VGKTELARALAEALFGSEDSMVRLDMSEFQERHTASRLTGAPPGFVGYEEAGQLTEAVRR 630
Query: 566 YEKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
+ V+L+++I+ A P +++L DG T+ G+ +
Sbjct: 631 HPYSVLLLDEIEKAHPDVFNLLLQLLDDGRLTDGQGRTV 669
>gi|171060752|ref|YP_001793101.1| type VI secretion ATPase [Leptothrix cholodnii SP-6]
gi|170778197|gb|ACB36336.1| type VI secretion ATPase, ClpV1 family [Leptothrix cholodnii SP-6]
Length = 916
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Query: 21 SSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHAL------FSSQKPAS----- 69
+S+ G S +P EA I P + AL + Q A
Sbjct: 151 ASLLAASPEQSQGASDSGAAPG--EASDAIPPAAMGKQEALKRFTTDLTEQARAGKMDPI 208
Query: 70 VSKED-IKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKF 128
V ++D I+ V ++ +R+++ N ++VG+ A+V F R+ RGDVP LK+ ++
Sbjct: 209 VGRDDEIRQVVDILMRRRQNNPILVGEAGVGKTAVVEGFAQRIARGDVPPALKEVQLLAL 268
>gi|383777623|ref|YP_005462189.1| putative ATP-dependent Clp protease ATP-binding subunit
[Actinoplanes missouriensis 431]
gi|381370855|dbj|BAL87673.1| putative ATP-dependent Clp protease ATP-binding subunit
[Actinoplanes missouriensis 431]
Length = 763
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 27/144 (18%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAESVFGS 536
L V Q D++ ++ + ++ K + F+L G +GK L+ ++AE +FGS
Sbjct: 455 LHRRVVGQDDAVRAVSRAIRRTRAGLKDPKRPSGSFILAGPSGVGKTELSKALAEFLFGS 514
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
D L +DM + +D + L+G Y EK+ VVL ++I+ A
Sbjct: 515 EDALIQLDMSEFHDRYTVSR--LVGAPPGYVGYDEGGQLTEKVRRKPFSVVLFDEIEKAH 572
Query: 581 PQ----FIKILADGFETENFGKVI 600
P ++IL DG T+ G+++
Sbjct: 573 PDVFNTLLQILEDGRLTDGQGRIV 596
>gi|418950315|ref|ZP_13502500.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-160]
gi|375377281|gb|EHS80761.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-160]
Length = 818
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|331086971|ref|ZP_08336046.1| hypothetical protein HMPREF0987_02349 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330409421|gb|EGG88864.1| hypothetical protein HMPREF0987_02349 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 814
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 31/159 (19%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVL----VECKSAKKATW-FLLQGNDTIGK 522
S+SA+L++ L + LQ+ V Q +++ ++ + + V KS + FL G +GK
Sbjct: 496 SESARLRK--LEQTLQKRVIGQEEAVTAVAKAVKRGRVGLKSPNRPIGSFLFLGPTGVGK 553
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL-- 569
L+ ++AE++FG D + +DM ++ + HS ++G+ Y EK+
Sbjct: 554 TELSKALAEALFGQEDAMIRVDM---SEYMEKHSVSKMIGSPPGYVGHEEGGQLSEKVRR 610
Query: 570 ----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
V+L ++I+ A P +++L DG T++ G+ I
Sbjct: 611 NPYAVILFDEIEKAHPDVFNILLQVLDDGHITDSQGRKI 649
>gi|448744005|ref|ZP_21725910.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus KT/Y21]
gi|445562744|gb|ELY18910.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus KT/Y21]
Length = 818
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|392392052|ref|YP_006428654.1| chaperone ATPase [Desulfitobacterium dehalogenans ATCC 51507]
gi|390523130|gb|AFL98860.1| ATPase with chaperone activity, ATP-binding subunit
[Desulfitobacterium dehalogenans ATCC 51507]
Length = 826
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 43/198 (21%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L + L + V Q D++ ++ + ++ K F+ G +GK LA +++E+
Sbjct: 510 LEETLHQRVVGQEDAVKAVSRAVRRARAGLKDPKRPVGSFIFLGPTGVGKTELARALSEA 569
Query: 533 VFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDL 578
+FG D L IDM + + G H E L ++ V+L+++I+
Sbjct: 570 LFGEEDALIRIDMSEYMEKHAVSRLVGAPPGYIGHDEGGQLTEAVRRKPYSVILLDEIEK 629
Query: 579 ADPQ----FIKILADGFETENFGKVIFVLTKGDSSNYEERIENQDSVINMTLKVN----- 629
A P+ +++L DG T+ TKG + ++ +++VI MT V
Sbjct: 630 AHPEVFNILLQVLEDGRLTD---------TKGRTVDF------RNAVIIMTSNVGASFMR 674
Query: 630 ERNQNFDHKRKAEWEFAN 647
+ F +R E E+ N
Sbjct: 675 KEALGFASRRDEETEYKN 692
>gi|283769680|ref|ZP_06342572.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus subsp. aureus H19]
gi|283459827|gb|EFC06917.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus subsp. aureus H19]
Length = 818
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|258422629|ref|ZP_05685535.1| endopeptidase [Staphylococcus aureus A9635]
gi|417890327|ref|ZP_12534404.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21200]
gi|418308157|ref|ZP_12919810.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21194]
gi|418559680|ref|ZP_13124215.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21252]
gi|418888425|ref|ZP_13442562.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1524]
gi|418993239|ref|ZP_13540878.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG290]
gi|257847201|gb|EEV71209.1| endopeptidase [Staphylococcus aureus A9635]
gi|341855054|gb|EGS95908.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21200]
gi|365241637|gb|EHM82381.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21194]
gi|371974523|gb|EHO91853.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21252]
gi|377747202|gb|EHT71168.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG290]
gi|377754877|gb|EHT78782.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1524]
Length = 818
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDALHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|146318045|ref|YP_001197757.1| ATPases with chaperone activity, ATP-binding subunit [Streptococcus
suis 05ZYH33]
gi|145688851|gb|ABP89357.1| ATPases with chaperone activity, ATP-binding subunit [Streptococcus
suis 05ZYH33]
Length = 250
Score = 43.9 bits (102), Expect = 0.39, Method: Composition-based stats.
Identities = 43/174 (24%), Positives = 74/174 (42%), Gaps = 32/174 (18%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ +L L NV Q D++ ++ + ++ + FL G +GK
Sbjct: 52 SDIERLK--ELKNRLAANVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGK 109
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRND---------------GVSSHSEMLMGTLKNYE 567
LA +A +FG+ D + +DM + +D G +S L ++
Sbjct: 110 TELAKQLALDLFGNKDAIIRLDMSEYSDRTAVSKLIGTTAGYIGYDDNSHTLTERVRRNP 169
Query: 568 KLVVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNY 611
+VL+++I+ ADPQ I ++L DG T+ NF I + T Y
Sbjct: 170 YSIVLMDEIEKADPQVITLLLQVLDDGHLTDGQGNQVNFKNTIIIATSNAGFGY 223
>gi|138894526|ref|YP_001124979.1| ATP-dependent Clp protease-like protein [Geobacillus
thermodenitrificans NG80-2]
gi|196247869|ref|ZP_03146571.1| ATPase AAA-2 domain protein [Geobacillus sp. G11MC16]
gi|134266039|gb|ABO66234.1| ATP-dependent Clp protease-like (class III stress gene)
[Geobacillus thermodenitrificans NG80-2]
gi|196212653|gb|EDY07410.1| ATPase AAA-2 domain protein [Geobacillus sp. G11MC16]
Length = 711
Score = 43.9 bits (102), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 29/145 (20%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAESVFGS 536
L + V Q +++ + + + ++ KA FL G +GK LA ++AE +FG+
Sbjct: 419 LAKKVIGQAEAVKKVAKAIRRSRAGLKAKHRPVGSFLFVGPTGVGKTELAKTLAEELFGT 478
Query: 537 TDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVEDIDLA 579
D + +DM ++ + HS L+G+ Y EK+ ++L+++I+ A
Sbjct: 479 KDSMIRLDM---SEYMEKHSVSKLIGSPPGYVGFEEAGQLTEKVRRNPYSIILLDEIEKA 535
Query: 580 DPQ----FIKILADGFETENFGKVI 600
P F++IL DG T++ G+ +
Sbjct: 536 HPDVQHIFLQILEDGRLTDSQGRTV 560
>gi|325288483|ref|YP_004264664.1| ATPase AAA [Syntrophobotulus glycolicus DSM 8271]
gi|324963884|gb|ADY54663.1| ATPase AAA-2 domain protein [Syntrophobotulus glycolicus DSM 8271]
Length = 841
Score = 43.9 bits (102), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 25/158 (15%)
Query: 466 ELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTI 520
E +SA+L + L +VL E V Q +++ ++ + ++ K F+ G +
Sbjct: 499 EEEESARLLK--LEEVLHERVVGQEEAVSAVARSVRRARAGLKDPKRPIGSFIFLGPTGV 556
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNY 566
GK LA ++AE++FG + L +DM + + G H E L ++
Sbjct: 557 GKTELARALAEALFGDENSLIRVDMSEYMEKHAVSRMVGSPPGYVGHDEGGQLTEAVRRK 616
Query: 567 EKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
V+L ++I+ A P+ +++L DG T++ G+V+
Sbjct: 617 PYSVLLFDEIEKAHPEVFNILLQVLEDGRLTDSKGRVV 654
>gi|302540945|ref|ZP_07293287.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
hygroscopicus ATCC 53653]
gi|302458563|gb|EFL21656.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
himastatinicus ATCC 53653]
Length = 831
Score = 43.9 bits (102), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 69/142 (48%), Gaps = 23/142 (16%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
L++ V Q +++ ++ E ++ ++ + FL G+ +GK LA ++AE++FGS
Sbjct: 540 LRKRVIGQDEAVGAVAEAVLRSRTGLADPGRPTGSFLFLGSTGVGKTELARALAEALFGS 599
Query: 537 TDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADPQ 582
+L+ +DM + + G H E L ++ ++L+++++ A P
Sbjct: 600 EELMVRLDMSEYQERHTVSRLVGAPPGYVGHEEAGQLTEAVRRRPYSLLLLDEVEKAHPD 659
Query: 583 ----FIKILADGFETENFGKVI 600
+++L DG T+ G+ +
Sbjct: 660 VFNILLQVLDDGRLTDAQGRTV 681
>gi|418871544|ref|ZP_13425920.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-125]
gi|418949170|ref|ZP_13501429.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-157]
gi|375368097|gb|EHS72024.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-125]
gi|375369614|gb|EHS73487.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-157]
Length = 818
Score = 43.9 bits (102), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDEDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|418282574|ref|ZP_12895339.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21202]
gi|365169575|gb|EHM60821.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21202]
Length = 818
Score = 43.9 bits (102), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDALHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|384546805|ref|YP_005736058.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Staphylococcus aureus subsp. aureus ED133]
gi|416840758|ref|ZP_11903945.1| endopeptidase [Staphylococcus aureus O11]
gi|416846026|ref|ZP_11906369.1| endopeptidase [Staphylococcus aureus O46]
gi|298693856|gb|ADI97078.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Staphylococcus aureus subsp. aureus ED133]
gi|323439794|gb|EGA97511.1| endopeptidase [Staphylococcus aureus O11]
gi|323443104|gb|EGB00724.1| endopeptidase [Staphylococcus aureus O46]
Length = 818
Score = 43.9 bits (102), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|291303744|ref|YP_003515022.1| ATPase AAA-2 domain-containing protein [Stackebrandtia nassauensis
DSM 44728]
gi|290572964|gb|ADD45929.1| ATPase AAA-2 domain protein [Stackebrandtia nassauensis DSM 44728]
Length = 854
Score = 43.9 bits (102), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 53/222 (23%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAESVFGS 536
L + + Q D++ ++ + + ++ K + F+ G +GK L+ ++AE +FGS
Sbjct: 514 LHKRIIGQHDAVKAVSQAIRRTRAGLKDPKRPSGSFIFAGPSGVGKSELSKALAEFLFGS 573
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
D L +DM + +D + L+G Y EK+ VVL ++I+ A
Sbjct: 574 EDALIQLDMSEFHDRYTVSR--LVGAPPGYVGYDEGGQLTEKVRRKPFSVVLFDEIEKAH 631
Query: 581 PQ----FIKILADGFETENFGKV------IFVLT---------KGDSSNYEERIENQDSV 621
+ ++IL DG T+ G++ + +LT K S ++ +D
Sbjct: 632 SEVFNTLLQILEDGRLTDGQGRIVDFKNTVLILTTNLGTKDVAKAVSLGFQAETGGEDDY 691
Query: 622 INMTLKVN-ERNQNFDHKRKAEWEFANKTKS----PRIDEKE 658
M LKVN E Q+F EF N+ P++ E E
Sbjct: 692 ERMKLKVNDELKQHF------RPEFLNRIDDTIVFPKLSENE 727
>gi|282924437|ref|ZP_06332109.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus A9765]
gi|418911193|ref|ZP_13465176.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG547]
gi|418927840|ref|ZP_13481726.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1612]
gi|282592848|gb|EFB97852.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus A9765]
gi|377724571|gb|EHT48686.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG547]
gi|377737752|gb|EHT61761.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1612]
Length = 818
Score = 43.9 bits (102), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|257424638|ref|ZP_05601065.1| endopeptidase [Staphylococcus aureus subsp. aureus 55/2053]
gi|257427306|ref|ZP_05603705.1| endopeptidase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257429942|ref|ZP_05606326.1| endopeptidase [Staphylococcus aureus subsp. aureus 68-397]
gi|257435548|ref|ZP_05611596.1| ATPase AAA-2 domain-containing protein [Staphylococcus aureus
subsp. aureus M876]
gi|282913357|ref|ZP_06321146.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus M899]
gi|282923274|ref|ZP_06330954.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus subsp. aureus C101]
gi|293500403|ref|ZP_06666254.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus subsp. aureus 58-424]
gi|293509348|ref|ZP_06668059.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus subsp. aureus M809]
gi|293523935|ref|ZP_06670622.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus M1015]
gi|257272208|gb|EEV04331.1| endopeptidase [Staphylococcus aureus subsp. aureus 55/2053]
gi|257275499|gb|EEV06972.1| endopeptidase [Staphylococcus aureus subsp. aureus 65-1322]
gi|257279139|gb|EEV09740.1| endopeptidase [Staphylococcus aureus subsp. aureus 68-397]
gi|257284739|gb|EEV14858.1| ATPase AAA-2 domain-containing protein [Staphylococcus aureus
subsp. aureus M876]
gi|282314142|gb|EFB44532.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus subsp. aureus C101]
gi|282322389|gb|EFB52711.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus M899]
gi|290920898|gb|EFD97959.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus M1015]
gi|291095408|gb|EFE25669.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus subsp. aureus 58-424]
gi|291467445|gb|EFF09960.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus subsp. aureus M809]
Length = 818
Score = 43.9 bits (102), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|442805829|ref|YP_007373978.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Clostridium
stercorarium subsp. stercorarium DSM 8532]
gi|442741679|gb|AGC69368.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Clostridium
stercorarium subsp. stercorarium DSM 8532]
Length = 765
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 83/176 (47%), Gaps = 36/176 (20%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKS----AKKATWFLLQGNDTIGKRRLALSIAESVFGST 537
L V Q ++ S+ + + +S +K + F+ G +GK LA ++AE +FGS
Sbjct: 465 LHRRVVGQNRAVESVAKAIRRNRSDFRRKRKPSSFIFVGPTGVGKTELARAVAEELFGSE 524
Query: 538 DLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVEDIDLAD 580
D + +DM ++ + H+ L+G Y EK+ V+L+++I+ A
Sbjct: 525 DAMIRLDM---SEYMEKHTVSKLIGAPPGYVGFDQGGQLTEKVRRKPYSVILLDEIEKAH 581
Query: 581 PQ----FIKILADGFETENFGK-------VIFVLTKGDSSNYEERI-ENQDSVINM 624
P ++I+ DG T++ G+ +I + + +SN I N ++V+NM
Sbjct: 582 PDVFNILLQIMEDGRLTDSQGRTVSFENTIIIMTSNAGTSNRAYSIGYNNENVVNM 637
>gi|420143743|ref|ZP_14651240.1| ATP-dependent Clp protease ATP-binding subunit [Lactococcus
garvieae IPLA 31405]
gi|391856614|gb|EIT67154.1| ATP-dependent Clp protease ATP-binding subunit [Lactococcus
garvieae IPLA 31405]
Length = 816
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 23/145 (15%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAE 531
+L K L + V Q ++I ++ + +S T F+ G +GK LA ++AE
Sbjct: 510 NLEKELHKRVVGQEEAISAVSRAIRRARSGIADTRRPLGSFMFLGPTGVGKTELAKALAE 569
Query: 532 SVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDID 577
SVFGS + + +DM + + G + E L ++N V+L+++++
Sbjct: 570 SVFGSEENMIRVDMSEFMEKFSTSRLIGAPPGYVGYDEGGQLTEQVRNKPYSVILLDEVE 629
Query: 578 LADPQ----FIKILADGFETENFGK 598
A P ++IL DGF T+ G+
Sbjct: 630 KAHPDIFNIMLQILDDGFVTDTKGR 654
>gi|385259719|ref|ZP_10037883.1| ATPase, AAA family, partial [Streptococcus sp. SK140]
gi|385193372|gb|EIF40742.1| ATPase, AAA family, partial [Streptococcus sp. SK140]
Length = 660
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + ++ + FL G +GK LA +A
Sbjct: 407 DMGHRLQTKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 466
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 467 DMFGTKDAIIRLDMSEYSD--RTAVSKLIGTTAGYVGYDDNNNTLTERVRRNPYSIVLLD 524
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 525 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 572
>gi|418286169|ref|ZP_12898820.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21209]
gi|418924752|ref|ZP_13478655.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG2018]
gi|365167723|gb|EHM59100.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21209]
gi|377746047|gb|EHT70018.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG2018]
Length = 818
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|347520959|ref|YP_004778530.1| ATP-dependent Clp protease ATP-binding subunit [Lactococcus
garvieae ATCC 49156]
gi|385832322|ref|YP_005870097.1| ATP-dependent Clp protease ATP-binding subunit [Lactococcus
garvieae Lg2]
gi|343179527|dbj|BAK57866.1| ATP-dependent Clp protease ATP-binding subunit [Lactococcus
garvieae ATCC 49156]
gi|343181475|dbj|BAK59813.1| ATP-dependent Clp protease ATP-binding subunit [Lactococcus
garvieae Lg2]
Length = 816
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 23/145 (15%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAE 531
+L K L + V Q ++I ++ + +S T F+ G +GK LA ++AE
Sbjct: 510 NLEKELHKRVVGQEEAISAVSRAIRRARSGIADTRRPLGSFMFLGPTGVGKTELAKALAE 569
Query: 532 SVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDID 577
SVFGS + + +DM + + G + E L ++N V+L+++++
Sbjct: 570 SVFGSEENMIRVDMSEFMEKFSTSRLIGAPPGYVGYDEGGQLTEQVRNKPYSVILLDEVE 629
Query: 578 LADPQ----FIKILADGFETENFGK 598
A P ++IL DGF T+ G+
Sbjct: 630 KAHPDIFNIMLQILDDGFVTDTKGR 654
>gi|417902906|ref|ZP_12546767.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21269]
gi|341850525|gb|EGS91643.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21269]
Length = 818
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|373957808|ref|ZP_09617768.1| ATP-dependent chaperone ClpB [Mucilaginibacter paludis DSM 18603]
gi|373894408|gb|EHQ30305.1| ATP-dependent chaperone ClpB [Mucilaginibacter paludis DSM 18603]
Length = 870
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 107/252 (42%), Gaps = 51/252 (20%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
L + V Q ++I +I + + ++ K F+ G +GK LA ++AE +F
Sbjct: 564 LHKRVAGQEEAIEAISDAIRRSRAGLQDKRKPIGSFIFLGTTGVGKTELAKALAEYLFND 623
Query: 537 TDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADPQ 582
L IDM + + G + E L ++ VVL+++I+ A P
Sbjct: 624 ESALVRIDMSEYQERHAVSRLVGAPPGYVGYDEGGQLTEAVRRKPYSVVLLDEIEKAHPD 683
Query: 583 ----FIKILADGFETENFGKV------IFVLTKGDSSN--------YEERIENQDSVINM 624
+++L DG T+N G+V I ++T S+ YEE N+D VI
Sbjct: 684 VFNILLQVLDDGRLTDNKGRVVNFKNTIIIMTSNIGSHIIQENFQGYEEI--NRDEVIAK 741
Query: 625 TLKVNERNQNFDHKRKA-EWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSR-QSSF 682
T +N+ F+ RK EF N RIDE T ++ D +S K F Q +
Sbjct: 742 T-----KNELFELLRKTIRPEFLN-----RIDEIIMFTPLSRDEISDIVKLQFKHLQQTL 791
Query: 683 NTLDLNMKADDE 694
+ + + A +E
Sbjct: 792 AEMGITLDASEE 803
>gi|124009962|ref|ZP_01694627.1| ATP-dependent Clp protease, ATP-binding subunit ClpC, putative
[Microscilla marina ATCC 23134]
gi|123984046|gb|EAY24424.1| ATP-dependent Clp protease, ATP-binding subunit ClpC, putative
[Microscilla marina ATCC 23134]
Length = 1144
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 20/137 (14%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
Q N+ Q ++IH++ ++LV K+A K L G +GK +A +A+ +FG+
Sbjct: 460 FQTNIYGQNEAIHTVSDLLVAIKAAVVRRGKPLASLLFVGPTGVGKTEMAKVLAQFMFGN 519
Query: 537 TDLLFHID----------MRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQF--- 583
+ + D MR DG S +L +++ V+L ++++ P F
Sbjct: 520 RNKMIRFDMSEYTDTRAIMRLTGDGTSGEG-LLTSSIRQDPFSVLLFDELEKVHPSFYDL 578
Query: 584 -IKILADGFETENFGKV 599
++IL +G T+ G+V
Sbjct: 579 LLQILGEGRLTDARGRV 595
>gi|15923515|ref|NP_371049.1| endopeptidase [Staphylococcus aureus subsp. aureus Mu50]
gi|15926202|ref|NP_373735.1| endopeptidase [Staphylococcus aureus subsp. aureus N315]
gi|49482754|ref|YP_039978.1| stress response-related Clp ATPase [Staphylococcus aureus subsp.
aureus MRSA252]
gi|49485389|ref|YP_042610.1| stress response-related Clp ATPase [Staphylococcus aureus subsp.
aureus MSSA476]
gi|87161024|ref|YP_493213.1| endopeptidase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|88194286|ref|YP_499078.1| endopeptidase [Staphylococcus aureus subsp. aureus NCTC 8325]
gi|148266984|ref|YP_001245927.1| ATPase [Staphylococcus aureus subsp. aureus JH9]
gi|150393031|ref|YP_001315706.1| ATPase [Staphylococcus aureus subsp. aureus JH1]
gi|151220699|ref|YP_001331521.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Staphylococcus aureus subsp. aureus str. Newman]
gi|156978853|ref|YP_001441112.1| endopeptidase [Staphylococcus aureus subsp. aureus Mu3]
gi|161508764|ref|YP_001574423.1| AAA family ATP-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221141039|ref|ZP_03565532.1| AAA family ATP-binding protein [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|253731128|ref|ZP_04865293.1| ClpB ATPase [Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253732532|ref|ZP_04866697.1| ClpB ATPase [Staphylococcus aureus subsp. aureus TCH130]
gi|255005318|ref|ZP_05143919.2| endopeptidase [Staphylococcus aureus subsp. aureus Mu50-omega]
gi|257795377|ref|ZP_05644356.1| endopeptidase [Staphylococcus aureus A9781]
gi|258408936|ref|ZP_05681217.1| endopeptidase [Staphylococcus aureus A9763]
gi|258420427|ref|ZP_05683370.1| endopeptidase [Staphylococcus aureus A9719]
gi|258439347|ref|ZP_05690279.1| endopeptidase [Staphylococcus aureus A9299]
gi|258444087|ref|ZP_05692424.1| endopeptidase [Staphylococcus aureus A8115]
gi|258446355|ref|ZP_05694513.1| endopeptidase [Staphylococcus aureus A6300]
gi|258448448|ref|ZP_05696563.1| endopeptidase [Staphylococcus aureus A6224]
gi|258452743|ref|ZP_05700741.1| endopeptidase [Staphylococcus aureus A5948]
gi|258453804|ref|ZP_05701778.1| endopeptidase [Staphylococcus aureus A5937]
gi|269202147|ref|YP_003281416.1| ClpA-related protein [Staphylococcus aureus subsp. aureus ED98]
gi|282894957|ref|ZP_06303180.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus A8117]
gi|282903112|ref|ZP_06311003.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus C160]
gi|282904902|ref|ZP_06312760.1| endopeptidase [Staphylococcus aureus subsp. aureus Btn1260]
gi|282907852|ref|ZP_06315687.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282910165|ref|ZP_06317969.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282918312|ref|ZP_06326049.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus subsp. aureus C427]
gi|282928860|ref|ZP_06336451.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus A10102]
gi|283957322|ref|ZP_06374775.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus A017934/97]
gi|284023534|ref|ZP_06377932.1| ClpA-related protein [Staphylococcus aureus subsp. aureus 132]
gi|294850300|ref|ZP_06791034.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus A9754]
gi|295406901|ref|ZP_06816704.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus A8819]
gi|295427062|ref|ZP_06819698.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus EMRSA16]
gi|297208762|ref|ZP_06925190.1| ClpC ATPase [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|297246275|ref|ZP_06930124.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus A8796]
gi|297590586|ref|ZP_06949225.1| Clpc ATPase [Staphylococcus aureus subsp. aureus MN8]
gi|304381877|ref|ZP_07364524.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|379013806|ref|YP_005290042.1| ClpA-related protein [Staphylococcus aureus subsp. aureus VC40]
gi|379020295|ref|YP_005296957.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Staphylococcus aureus subsp. aureus M013]
gi|384549389|ref|YP_005738641.1| Clp protease ATP binding subunit [Staphylococcus aureus subsp.
aureus JKD6159]
gi|384861187|ref|YP_005743907.1| Clp protease ATP binding subunit [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|384863853|ref|YP_005749212.1| negative regulator of genetic competence clpC/mecB [Staphylococcus
aureus subsp. aureus ECT-R 2]
gi|384868552|ref|YP_005748748.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus TCH60]
gi|384869110|ref|YP_005751824.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus T0131]
gi|385780790|ref|YP_005756961.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus 11819-97]
gi|386728282|ref|YP_006194665.1| hemolysin [Staphylococcus aureus subsp. aureus 71193]
gi|386830168|ref|YP_006236822.1| putative stress response-related Clp ATPase [Staphylococcus aureus
subsp. aureus HO 5096 0412]
gi|387142214|ref|YP_005730607.1| putative stress response-related Clp ATPase [Staphylococcus aureus
subsp. aureus TW20]
gi|387149685|ref|YP_005741249.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
regulator of genetic competence clcC/mecB
[Staphylococcus aureus 04-02981]
gi|387601879|ref|YP_005733400.1| negative regulator of genetic competence ClpC/mecB [Staphylococcus
aureus subsp. aureus ST398]
gi|387779664|ref|YP_005754462.1| putative stress response-related Clp ATPase [Staphylococcus aureus
subsp. aureus LGA251]
gi|404477910|ref|YP_006709340.1| stress response-related Clp ATPase [Staphylococcus aureus
08BA02176]
gi|415684080|ref|ZP_11449235.1| AAA family ATP-binding protein [Staphylococcus aureus subsp. aureus
CGS00]
gi|415688911|ref|ZP_11452426.1| AAA family ATP-binding protein [Staphylococcus aureus subsp. aureus
CGS01]
gi|415693998|ref|ZP_11455603.1| AAA family ATP-binding protein [Staphylococcus aureus subsp. aureus
CGS03]
gi|417648357|ref|ZP_12298183.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21189]
gi|417650784|ref|ZP_12300549.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21172]
gi|417654130|ref|ZP_12303857.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21193]
gi|417796780|ref|ZP_12443984.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21305]
gi|417798480|ref|ZP_12445646.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21310]
gi|417801347|ref|ZP_12448440.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21318]
gi|417889316|ref|ZP_12533407.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21195]
gi|417893562|ref|ZP_12537588.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21201]
gi|417895979|ref|ZP_12539955.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21235]
gi|417899762|ref|ZP_12543663.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21259]
gi|417902183|ref|ZP_12546052.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21266]
gi|418279368|ref|ZP_12892731.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21178]
gi|418310656|ref|ZP_12922192.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21331]
gi|418312992|ref|ZP_12924490.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21334]
gi|418315148|ref|ZP_12926612.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21340]
gi|418318082|ref|ZP_12929496.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21232]
gi|418320331|ref|ZP_12931692.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus VCU006]
gi|418423697|ref|ZP_12996844.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS1]
gi|418426641|ref|ZP_12999667.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS2]
gi|418429567|ref|ZP_13002498.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS3a]
gi|418432462|ref|ZP_13005262.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS4]
gi|418436176|ref|ZP_13007993.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS5]
gi|418439075|ref|ZP_13010796.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS6]
gi|418442055|ref|ZP_13013672.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS7]
gi|418445183|ref|ZP_13016674.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS8]
gi|418448123|ref|ZP_13019528.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS9]
gi|418450947|ref|ZP_13022289.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS10]
gi|418453964|ref|ZP_13025237.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS11a]
gi|418456868|ref|ZP_13028083.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS11b]
gi|418561558|ref|ZP_13126046.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21262]
gi|418566028|ref|ZP_13130417.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21264]
gi|418566752|ref|ZP_13131120.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21272]
gi|418570503|ref|ZP_13134771.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21283]
gi|418573446|ref|ZP_13137640.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21333]
gi|418581200|ref|ZP_13145283.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1605]
gi|418595404|ref|ZP_13159018.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21342]
gi|418599346|ref|ZP_13162835.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21343]
gi|418601623|ref|ZP_13165043.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21345]
gi|418639547|ref|ZP_13201792.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-3]
gi|418642050|ref|ZP_13204251.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-24]
gi|418643846|ref|ZP_13206001.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-55]
gi|418646212|ref|ZP_13208323.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-88]
gi|418651241|ref|ZP_13213249.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-91]
gi|418654853|ref|ZP_13216746.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-99]
gi|418656945|ref|ZP_13218729.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-105]
gi|418658745|ref|ZP_13220454.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-111]
gi|418662543|ref|ZP_13224087.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-122]
gi|418874542|ref|ZP_13428808.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIGC93]
gi|418877374|ref|ZP_13431613.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1165]
gi|418880231|ref|ZP_13434451.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1213]
gi|418883158|ref|ZP_13437358.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1769]
gi|418885818|ref|ZP_13439968.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1150]
gi|418891128|ref|ZP_13445245.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1176]
gi|418893984|ref|ZP_13448085.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1057]
gi|418896910|ref|ZP_13450983.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIGC341D]
gi|418899874|ref|ZP_13453933.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1214]
gi|418905107|ref|ZP_13459136.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIGC345D]
gi|418908279|ref|ZP_13462287.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG149]
gi|418913715|ref|ZP_13467688.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIGC340D]
gi|418916334|ref|ZP_13470297.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1267]
gi|418919339|ref|ZP_13473285.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIGC348]
gi|418922157|ref|ZP_13476074.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1233]
gi|418930554|ref|ZP_13484402.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1750]
gi|418933455|ref|ZP_13487279.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIGC128]
gi|418980365|ref|ZP_13528148.1| Negative regulator of genetic competence clpC/mecB [Staphylococcus
aureus subsp. aureus DR10]
gi|418981392|ref|ZP_13529107.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1242]
gi|418985025|ref|ZP_13532715.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1500]
gi|418990419|ref|ZP_13538080.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1096]
gi|419774829|ref|ZP_14300783.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus CO-23]
gi|419785934|ref|ZP_14311678.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-M]
gi|421149287|ref|ZP_15608945.1| endopeptidase [Staphylococcus aureus subsp. aureus str. Newbould
305]
gi|422744661|ref|ZP_16798616.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus MRSA177]
gi|422745104|ref|ZP_16799050.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus MRSA131]
gi|424775944|ref|ZP_18202931.1| hemolysin B [Staphylococcus aureus subsp. aureus CM05]
gi|424784378|ref|ZP_18211188.1| ATP-dependent Clp protease [Staphylococcus aureus CN79]
gi|440707559|ref|ZP_20888254.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21282]
gi|440733999|ref|ZP_20913612.1| endopeptidase [Staphylococcus aureus subsp. aureus DSM 20231]
gi|443637217|ref|ZP_21121302.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21236]
gi|443638292|ref|ZP_21122339.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21196]
gi|448741467|ref|ZP_21723431.1| endopeptidase [Staphylococcus aureus KT/314250]
gi|81649908|sp|Q6GBW3.1|CLPC_STAAS RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
gi|81651703|sp|Q6GJE4.1|CLPC_STAAR RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
gi|81706177|sp|Q7A797.1|CLPC_STAAN RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
gi|81782085|sp|Q99W78.1|CLPC_STAAM RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
gi|122063320|sp|Q2FJB5.1|CLPC_STAA3 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
gi|122063321|sp|Q2G0P5.1|CLPC_STAA8 RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
gi|122063323|sp|P0C281.1|CLPC_STAAC RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
gi|13700415|dbj|BAB41713.1| endopeptidase [Staphylococcus aureus subsp. aureus N315]
gi|14246293|dbj|BAB56687.1| endopeptidase [Staphylococcus aureus subsp. aureus Mu50]
gi|49240883|emb|CAG39550.1| putative stress response-related Clp ATPase [Staphylococcus aureus
subsp. aureus MRSA252]
gi|49243832|emb|CAG42257.1| putative stress response-related Clp ATPase [Staphylococcus aureus
subsp. aureus MSSA476]
gi|87126998|gb|ABD21512.1| endopeptidase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|87201844|gb|ABD29654.1| endopeptidase, putative [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|147740053|gb|ABQ48351.1| ATPase AAA-2 domain protein [Staphylococcus aureus subsp. aureus
JH9]
gi|149945483|gb|ABR51419.1| ATPase AAA-2 domain protein [Staphylococcus aureus subsp. aureus
JH1]
gi|150373499|dbj|BAF66759.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Staphylococcus aureus subsp. aureus str. Newman]
gi|156720988|dbj|BAF77405.1| endopeptidase [Staphylococcus aureus subsp. aureus Mu3]
gi|160367573|gb|ABX28544.1| AAA family ATP-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253725142|gb|EES93871.1| ClpB ATPase [Staphylococcus aureus subsp. aureus USA300_TCH959]
gi|253729461|gb|EES98190.1| ClpB ATPase [Staphylococcus aureus subsp. aureus TCH130]
gi|257789349|gb|EEV27689.1| endopeptidase [Staphylococcus aureus A9781]
gi|257840287|gb|EEV64750.1| endopeptidase [Staphylococcus aureus A9763]
gi|257843617|gb|EEV68023.1| endopeptidase [Staphylococcus aureus A9719]
gi|257847684|gb|EEV71683.1| endopeptidase [Staphylococcus aureus A9299]
gi|257850757|gb|EEV74702.1| endopeptidase [Staphylococcus aureus A8115]
gi|257854949|gb|EEV77894.1| endopeptidase [Staphylococcus aureus A6300]
gi|257858317|gb|EEV81204.1| endopeptidase [Staphylococcus aureus A6224]
gi|257859616|gb|EEV82466.1| endopeptidase [Staphylococcus aureus A5948]
gi|257864060|gb|EEV86814.1| endopeptidase [Staphylococcus aureus A5937]
gi|262074437|gb|ACY10410.1| ClpA-related protein [Staphylococcus aureus subsp. aureus ED98]
gi|269940097|emb|CBI48473.1| putative stress response-related Clp ATPase [Staphylococcus aureus
subsp. aureus TW20]
gi|282317446|gb|EFB47818.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus subsp. aureus C427]
gi|282325557|gb|EFB55865.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282328236|gb|EFB58514.1| ATP-dependent chaperone ClpB [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282331727|gb|EFB61238.1| endopeptidase [Staphylococcus aureus subsp. aureus Btn1260]
gi|282589468|gb|EFB94557.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus A10102]
gi|282596067|gb|EFC01028.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus C160]
gi|282762639|gb|EFC02776.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus A8117]
gi|283469817|emb|CAQ49028.1| negative regulator of genetic competence ClpC/mecB [Staphylococcus
aureus subsp. aureus ST398]
gi|283790773|gb|EFC29588.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus A017934/97]
gi|285816224|gb|ADC36711.1| ATP-dependent Clp protease, ATP-binding subunit ClpC / Negative
regulator of genetic competence clcC/mecB
[Staphylococcus aureus 04-02981]
gi|294822812|gb|EFG39247.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus A9754]
gi|294968132|gb|EFG44158.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus A8819]
gi|295128850|gb|EFG58480.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus EMRSA16]
gi|296886707|gb|EFH25612.1| ClpC ATPase [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|297176873|gb|EFH36131.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus A8796]
gi|297576885|gb|EFH95600.1| Clpc ATPase [Staphylococcus aureus subsp. aureus MN8]
gi|302332238|gb|ADL22431.1| Clp protease ATP binding subunit [Staphylococcus aureus subsp.
aureus JKD6159]
gi|302750416|gb|ADL64593.1| Clp protease ATP binding subunit [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|304339663|gb|EFM05610.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|312439057|gb|ADQ78128.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus TCH60]
gi|312829020|emb|CBX33862.1| negative regulator of genetic competence clpC/mecB [Staphylococcus
aureus subsp. aureus ECT-R 2]
gi|315128816|gb|EFT84815.1| AAA family ATP-binding protein [Staphylococcus aureus subsp. aureus
CGS03]
gi|315193888|gb|EFU24282.1| AAA family ATP-binding protein [Staphylococcus aureus subsp. aureus
CGS00]
gi|315196665|gb|EFU27012.1| AAA family ATP-binding protein [Staphylococcus aureus subsp. aureus
CGS01]
gi|320141611|gb|EFW33450.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus MRSA131]
gi|320141761|gb|EFW33589.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus MRSA177]
gi|329313245|gb|AEB87658.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus T0131]
gi|329727906|gb|EGG64355.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21172]
gi|329731020|gb|EGG67393.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21189]
gi|329731944|gb|EGG68300.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21193]
gi|334268166|gb|EGL86611.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21305]
gi|334275810|gb|EGL94085.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21310]
gi|334276873|gb|EGL95116.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21318]
gi|341841185|gb|EGS82648.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21235]
gi|341843778|gb|EGS84999.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21266]
gi|341844370|gb|EGS85587.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21259]
gi|341851726|gb|EGS92637.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21195]
gi|341854333|gb|EGS95204.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21201]
gi|344176766|emb|CCC87228.1| putative stress response-related Clp ATPase [Staphylococcus aureus
subsp. aureus LGA251]
gi|359829604|gb|AEV77582.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Staphylococcus aureus subsp. aureus M013]
gi|364521779|gb|AEW64529.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus 11819-97]
gi|365170702|gb|EHM61663.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21178]
gi|365227517|gb|EHM68711.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus VCU006]
gi|365236360|gb|EHM77256.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21331]
gi|365236933|gb|EHM77809.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21334]
gi|365243778|gb|EHM84446.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21340]
gi|365244323|gb|EHM84984.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21232]
gi|371971902|gb|EHO89294.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21264]
gi|371977415|gb|EHO94686.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21262]
gi|371981811|gb|EHO98973.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21333]
gi|371983497|gb|EHP00639.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21272]
gi|371984012|gb|EHP01140.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21283]
gi|374362503|gb|AEZ36608.1| ClpA-related protein [Staphylococcus aureus subsp. aureus VC40]
gi|374397453|gb|EHQ68663.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21343]
gi|374398042|gb|EHQ69240.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21345]
gi|374401543|gb|EHQ72609.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21342]
gi|375014250|gb|EHS07942.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-99]
gi|375017187|gb|EHS10809.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-3]
gi|375017827|gb|EHS11430.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-24]
gi|375026147|gb|EHS19533.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-91]
gi|375027272|gb|EHS20637.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-55]
gi|375031945|gb|EHS25205.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-105]
gi|375033412|gb|EHS26605.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-88]
gi|375036042|gb|EHS29129.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-122]
gi|375037645|gb|EHS30664.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-111]
gi|377696082|gb|EHT20438.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1165]
gi|377698332|gb|EHT22680.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1057]
gi|377704956|gb|EHT29264.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1214]
gi|377707212|gb|EHT31505.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1242]
gi|377708157|gb|EHT32448.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1500]
gi|377711984|gb|EHT36207.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1605]
gi|377716271|gb|EHT40454.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1769]
gi|377716421|gb|EHT40603.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1750]
gi|377722541|gb|EHT46666.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1096]
gi|377727116|gb|EHT51223.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1150]
gi|377732085|gb|EHT56136.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1176]
gi|377732669|gb|EHT56719.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1213]
gi|377735480|gb|EHT59510.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1233]
gi|377751686|gb|EHT75614.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1267]
gi|377755618|gb|EHT79516.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG149]
gi|377758321|gb|EHT82206.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIGC340D]
gi|377761689|gb|EHT85558.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIGC341D]
gi|377766647|gb|EHT90480.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIGC345D]
gi|377767304|gb|EHT91102.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIGC348]
gi|377771235|gb|EHT94989.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIGC128]
gi|377771882|gb|EHT95635.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIGC93]
gi|379991893|gb|EIA13355.1| Negative regulator of genetic competence clpC/mecB [Staphylococcus
aureus subsp. aureus DR10]
gi|383361743|gb|EID39109.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-M]
gi|383971330|gb|EID87408.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus CO-23]
gi|384229575|gb|AFH68822.1| Negative regulator of genetic competence clpC/mecB [Staphylococcus
aureus subsp. aureus 71193]
gi|385195560|emb|CCG15169.1| putative stress response-related Clp ATPase [Staphylococcus aureus
subsp. aureus HO 5096 0412]
gi|387720914|gb|EIK08805.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS3a]
gi|387721079|gb|EIK08966.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS2]
gi|387722489|gb|EIK10287.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS1]
gi|387727528|gb|EIK15041.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS4]
gi|387729536|gb|EIK16971.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS5]
gi|387731576|gb|EIK18858.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS6]
gi|387738379|gb|EIK25422.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS8]
gi|387739630|gb|EIK26626.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS9]
gi|387739792|gb|EIK26775.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS7]
gi|387746895|gb|EIK33615.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS10]
gi|387748305|gb|EIK34994.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS11a]
gi|387749110|gb|EIK35754.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus VRS11b]
gi|394330204|gb|EJE56296.1| endopeptidase [Staphylococcus aureus subsp. aureus str. Newbould
305]
gi|402346723|gb|EJU81800.1| hemolysin B [Staphylococcus aureus subsp. aureus CM05]
gi|404439399|gb|AFR72592.1| putative stress response-related Clp ATPase [Staphylococcus aureus
08BA02176]
gi|408422956|emb|CCJ10367.1| Clp protease ATP binding subunit [Staphylococcus aureus subsp.
aureus ST228]
gi|408424944|emb|CCJ12331.1| Clp protease ATP binding subunit [Staphylococcus aureus subsp.
aureus ST228]
gi|408426933|emb|CCJ14296.1| Clp protease ATP binding subunit [Staphylococcus aureus subsp.
aureus ST228]
gi|408428921|emb|CCJ26086.1| Clp protease ATP binding subunit [Staphylococcus aureus subsp.
aureus ST228]
gi|408430909|emb|CCJ18224.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus ST228]
gi|408432903|emb|CCJ20188.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus ST228]
gi|408434892|emb|CCJ22152.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus ST228]
gi|408436877|emb|CCJ24120.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus ST228]
gi|421956977|gb|EKU09301.1| ATP-dependent Clp protease [Staphylococcus aureus CN79]
gi|436431894|gb|ELP29246.1| endopeptidase [Staphylococcus aureus subsp. aureus DSM 20231]
gi|436505881|gb|ELP41740.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21282]
gi|443406095|gb|ELS64680.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21236]
gi|443409729|gb|ELS68221.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus 21196]
gi|445547768|gb|ELY16030.1| endopeptidase [Staphylococcus aureus KT/314250]
Length = 818
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|82750232|ref|YP_415973.1| endopeptidase [Staphylococcus aureus RF122]
gi|282915846|ref|ZP_06323611.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus subsp. aureus D139]
gi|122063322|sp|Q2YSD6.1|CLPC_STAAB RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
gi|82655763|emb|CAI80163.1| endopeptidase [Staphylococcus aureus RF122]
gi|282320142|gb|EFB50487.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus subsp. aureus D139]
Length = 818
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|418954707|ref|ZP_13506663.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-189]
gi|375372472|gb|EHS76212.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-189]
Length = 818
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|253315634|ref|ZP_04838847.1| endopeptidase [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
Length = 818
Score = 43.9 bits (102), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|418578415|ref|ZP_13142510.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1114]
gi|418902788|ref|ZP_13456829.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1770]
gi|377696442|gb|EHT20797.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1114]
gi|377741803|gb|EHT65788.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1770]
Length = 818
Score = 43.9 bits (102), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|357238624|ref|ZP_09125960.1| ATPase, AAA family [Streptococcus ictaluri 707-05]
gi|356752346|gb|EHI69471.1| ATPase, AAA family [Streptococcus ictaluri 707-05]
Length = 699
Score = 43.9 bits (102), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDLFGSKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 506 NKNTLTERVRRNPYAIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 555
>gi|313124687|ref|YP_004034946.1| clp-like ATP-dependent protease ATP-binding subunit [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
gi|312281250|gb|ADQ61969.1| Putative Clp-like ATP-dependent protease ATP-binding subunit
[Lactobacillus delbrueckii subsp. bulgaricus ND02]
Length = 696
Score = 43.9 bits (102), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D + L+GT Y
Sbjct: 443 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 500
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
EK+ ++L+++I+ ADPQ I ++L DG T+ G +
Sbjct: 501 NSNTLTEKVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTV 550
>gi|431795765|ref|YP_007222669.1| chaperone ATPase [Echinicola vietnamensis DSM 17526]
gi|430786530|gb|AGA76659.1| ATPase with chaperone activity, ATP-binding subunit [Echinicola
vietnamensis DSM 17526]
Length = 842
Score = 43.9 bits (102), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 99/231 (42%), Gaps = 54/231 (23%)
Query: 482 LQENVPWQFDSIHSIVEVL----VECKSAKKATW-FLLQGNDTIGKRRLALSIAESVFGS 536
LQ+ V Q D+I + + + V K KK F+ G +GK LA ++A +F
Sbjct: 532 LQDKVIGQNDAIKKLTKAIQRTRVGLKDPKKPIGSFVFLGPTGVGKTELAKTLATYLFDK 591
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
D L IDM + + S L+G Y EK+ VVL+++I+ A
Sbjct: 592 EDSLVRIDMSEYMEKFSVSR--LVGAPPGYVGYEEGGQLTEKVRRKPYSVVLLDEIEKAH 649
Query: 581 PQ----FIKILADGFETENFGKVIFVLTKGDSSNYEERIENQDSVINMTLKVNERN-QNF 635
P +++L DG T+ G+ R++ +++VI MT + R+ ++F
Sbjct: 650 PDVFNLLLQVLDDGILTDGLGR---------------RVDFRNTVIIMTSNIGVRDLKDF 694
Query: 636 DHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLD 686
A FA+K K +DE V + S KK FS + N LD
Sbjct: 695 G----AGIGFASKAKQENMDE------VMKSTIQSALKKAFSPE-FLNRLD 734
>gi|91783924|ref|YP_559130.1| ATP-dependent Clp protease, ATP- binding subunit [Burkholderia
xenovorans LB400]
gi|91687878|gb|ABE31078.1| Putative ATP-dependent Clp protease, ATP- binding subunit
[Burkholderia xenovorans LB400]
Length = 961
Score = 43.9 bits (102), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 108/265 (40%), Gaps = 60/265 (22%)
Query: 393 FLDSNSISFA-ESAMKPHNSSNS-----------VAKFRRQQSCSTIEFNFGNCT---RK 437
FL ++ ++A + H SS S +A+ RR+Q + F T +
Sbjct: 471 FLPDKAVDLIDQAAAREHLSSTSRPAEVLELESEIAQIRREQEYAASHKQFERATALGEQ 530
Query: 438 PQGVEPRLDSLK-------SNEGKEVKITL---------ALGNSELSDSAKLQRSDLYKV 481
G + RLD S EV TL + ++L+ K + +
Sbjct: 531 LSGKQTRLDDATQAWKRRVSTSTAEVTRTLVAEIVAKMTGIPVADLTQEEKTRLLQMEDR 590
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKKA-----TWFLLQGNDTIGKRRLALSIAESVFGS 536
L V Q ++I ++ + + ++ +A FL G +GK LA ++AE VFG
Sbjct: 591 LHRRVIGQEEAISAVSDAVRRSRAGLQARHQPLAVFLFLGPTGVGKTELAKALAEVVFGD 650
Query: 537 TDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVEDIDLA 579
D + IDM ++ + H+ L+G Y E++ V+L+++I+ A
Sbjct: 651 EDAIVRIDM---SEYMERHAVARLIGAPPGYVGYDEGGQLTERVRRRPHSVILLDEIEKA 707
Query: 580 DPQ----FIKILADGFETENFGKVI 600
P +++ DG T+ G+VI
Sbjct: 708 HPDVYNVLLQVFDDGRLTDGKGRVI 732
>gi|4587988|gb|AAD25929.1|AF085279_2 hypothetical protein [Arabidopsis thaliana]
Length = 798
Score = 43.9 bits (102), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 23/150 (15%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSA--KKATWFLLQGNDTIGKRRLALSIAESVFG 535
+Y+ L + V Q ++ I L + + ++ W L G DT+GKRR++L +AE V+
Sbjct: 428 IYRRLTDMVSGQDEAARVISCALSQPPKSVTRRDVWLNLVGPDTVGKRRMSLVLAEIVYQ 487
Query: 536 STDLLFHIDMRKRNDGVSSHSEMLMGTLKN-----YEKL------VVLVEDIDLADPQFI 584
S +D+ G+ + + K +E + VV +E+I+ AD +
Sbjct: 488 SEHRFMAVDLGAAEQGMGGCDDPMRLRGKTMVDHIFEVMCRNPFCVVFLENIEKADEKLQ 547
Query: 585 KILADGFETENF----------GKVIFVLT 604
L+ ET F G IFV+T
Sbjct: 548 MSLSKAIETGKFMDSHGREVGIGNTIFVMT 577
>gi|320546903|ref|ZP_08041205.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
equinus ATCC 9812]
gi|320448421|gb|EFW89162.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
equinus ATCC 9812]
Length = 702
Score = 43.9 bits (102), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D + L+GT Y
Sbjct: 450 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSD--RTAVSKLIGTTAGYVGYDD 507
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 508 NNNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 557
>gi|262049567|ref|ZP_06022436.1| endopeptidase [Staphylococcus aureus D30]
gi|259162307|gb|EEW46880.1| endopeptidase [Staphylococcus aureus D30]
Length = 818
Score = 43.9 bits (102), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|257432644|ref|ZP_05609004.1| endopeptidase [Staphylococcus aureus subsp. aureus E1410]
gi|257282059|gb|EEV12194.1| endopeptidase [Staphylococcus aureus subsp. aureus E1410]
Length = 818
Score = 43.9 bits (102), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|325261892|ref|ZP_08128630.1| ATP-dependent chaperone protein ClpB [Clostridium sp. D5]
gi|324033346|gb|EGB94623.1| ATP-dependent chaperone protein ClpB [Clostridium sp. D5]
Length = 865
Score = 43.5 bits (101), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 118/605 (19%), Positives = 219/605 (36%), Gaps = 118/605 (19%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P E+I+ V + RK + N V++G+ A+V R+ RGDVP+ LK +
Sbjct: 178 PVIGRDEEIRNVIRILSRKTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPEGLKNKTIF 237
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNF 186
+ + E E LK ++ + + G I++ +L V
Sbjct: 238 SLDMGALVAGAKYRGEFE---ERLKAVLEEVKNSDGQIILFIDELHTIVGA--------- 285
Query: 187 NGEIASCYNPINHLVSEVGKLVSDCNSASST---RVWLMATASYQT-YMKCQMRQPPLEI 242
G+ + N L + + C A++ R ++ A+ + + + +P +E
Sbjct: 286 -GKTDGAMDAGNMLKPMLARGELHCIGATTLDEYRQYIEKDAALERRFQPVMVEEPTVE- 343
Query: 243 QWALQAVSIPSGGLGLS-----LHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNC 297
A+SI G L H + +S L + S + + F D ++
Sbjct: 344 ----DAISILRG---LKERYEVFHGVKITDSALVAAAMLSNRYISDRFL----PDKAIDL 392
Query: 298 CAECTSNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQKDELVEMRRKWNRSCHSLHQGRH 357
E + + E + +L +Q A +K+E R R H
Sbjct: 393 VDEACALIKTELDSMPTELDELRRRIMQLEIEEEALKKEE---DRLSKERLGHL------ 443
Query: 358 TQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSISFAESAMKPHNSSN-SVA 416
+ L G + YA W ++ + S+ + + N +
Sbjct: 444 -----------QEELAGLNEEYAGKKAQWDNEKA------SVERVQKIREEIEQVNKDIQ 486
Query: 417 KFRRQQSCS-TIEFNFGNCTRKPQGVEPRLDSLKSNEGKEVKITLALGNSELSDS----- 470
K +R+ + E +G + + +E D ++ E LAL + ++D
Sbjct: 487 KAQREYDLNLAAELQYGRLPQLQKQLEEEEDKVREKE-------LALVHEAVTDEEIAKI 539
Query: 471 ---------AKLQRSDLYKVLQ------ENVPWQFDSIHSIVEVLVECKS-----AKKAT 510
AKL S+ K L V Q + + + E ++ K+ +K
Sbjct: 540 ISRWTGIPVAKLNESERSKTLHLGDELHRRVIGQDEGVELVTEAIIRSKAGIKDPSKPIG 599
Query: 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE- 557
FL G +GK LA ++AES+F + + IDM + + G + E
Sbjct: 600 SFLFLGPTGVGKTELAKALAESLFDDENSMVRIDMSEYMEKFSVSRLIGAPPGYVGYDEG 659
Query: 558 -MLMGTLKNYEKLVVLVEDIDLADPQ----FIKILADGFETENFGK------VIFVLTKG 606
L ++ VVL ++I+ A P +++L DG T++ G+ I ++T
Sbjct: 660 GQLTEAVRRKPYSVVLFDEIEKAHPDVFNVLLQVLDDGRITDSQGRTVDFKNTILIMTSN 719
Query: 607 DSSNY 611
+NY
Sbjct: 720 LGANY 724
>gi|374320677|ref|YP_005073806.1| Negative regulator of genetic competence clpC/mecB [Paenibacillus
terrae HPL-003]
gi|357199686|gb|AET57583.1| Negative regulator of genetic competence clpC/mecB [Paenibacillus
terrae HPL-003]
Length = 814
Score = 43.5 bits (101), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 39/176 (22%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY---- 566
F+ G +GK LA ++AES+FG + + IDM ++ + HS L+G Y
Sbjct: 541 FIFLGPTGVGKTELARALAESMFGDENAVIRIDM---SEYMEKHSTSRLVGAPPGYVGYE 597
Query: 567 ------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI------FVLT 604
EK+ VVL+++I+ A P+ +++L DG T++ G+V+ +LT
Sbjct: 598 EGGQLTEKVRRKPYSVVLLDEIEKAHPEVFNILLQVLEDGRLTDSKGRVVDFRNTLIILT 657
Query: 605 KGDSSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSP----RIDE 656
SN ++ ++S + T V+ ++D+ + E K+ P RIDE
Sbjct: 658 ----SNVGAQVIKRNSTLGFTAVVDA-GADYDNMKGKVMEELKKSFRPEFLNRIDE 708
>gi|340356808|ref|ZP_08679449.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Sporosarcina
newyorkensis 2681]
gi|339620146|gb|EGQ24717.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Sporosarcina
newyorkensis 2681]
Length = 817
Score = 43.5 bits (101), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 31/159 (19%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGK 522
++SAKL + + ++L E V Q +++ +I + ++ K F+ G +GK
Sbjct: 497 TESAKLLK--MEEILHERVIGQNEAVLAISRAIRRARAGLKDPKRPIGSFIFLGPTGVGK 554
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSH-SEMLMGTLKNY----------EKL-- 569
LA ++AE +FG D + IDM ++ + H + L+G+ Y EK+
Sbjct: 555 TELARALAEVMFGDEDAMIRIDM---SEYMEKHATSRLVGSPPGYVGYEEGGQLTEKVRR 611
Query: 570 ----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
VVL+++I+ A P +++L DG T++ G+ +
Sbjct: 612 KPYSVVLLDEIEKAHPDVFNILLQVLEDGRLTDSKGRTV 650
>gi|417938523|ref|ZP_12581820.1| ATPase, AAA family [Streptococcus infantis SK970]
gi|343390983|gb|EGV03559.1| ATPase, AAA family [Streptococcus infantis SK970]
Length = 700
Score = 43.5 bits (101), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + + ++ + FL G +GK LA +A
Sbjct: 407 DMGHRLQTKVIGQDKAVEAVAKAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 466
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 467 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRRNPYSIVLLD 524
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 525 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 572
>gi|300812503|ref|ZP_07092928.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
gi|300496530|gb|EFK31627.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
Length = 696
Score = 43.5 bits (101), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D + L+GT Y
Sbjct: 443 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 500
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
EK+ ++L+++I+ ADPQ I ++L DG T+ G +
Sbjct: 501 NSNTLTEKVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTV 550
>gi|417685806|ref|ZP_12335086.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA41301]
gi|418158967|ref|ZP_12795673.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA17227]
gi|419520304|ref|ZP_14059903.1| AAA domain family protein [Streptococcus pneumoniae GA05245]
gi|332077624|gb|EGI88085.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA41301]
gi|353826622|gb|EHE06780.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA17227]
gi|379541928|gb|EHZ07093.1| AAA domain family protein [Streptococcus pneumoniae GA05245]
Length = 701
Score = 43.5 bits (101), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ + + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQNAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|422758763|ref|ZP_16812525.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
gi|322411598|gb|EFY02506.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
Length = 702
Score = 43.5 bits (101), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D + L+GT Y
Sbjct: 451 FLFVGPTGVGKTELAKQLALDLFGSKDAIIRLDMSEYSDRTAVSK--LIGTTAGYIGYDD 508
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 509 NNNTLTERVRRNPYAIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 558
>gi|419799818|ref|ZP_14325138.1| ATPase, AAA family [Streptococcus parasanguinis F0449]
gi|385697014|gb|EIG27472.1| ATPase, AAA family [Streptococcus parasanguinis F0449]
Length = 709
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + ++ + FL G +GK LA +A
Sbjct: 404 DMGHRLQTKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 463
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 464 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRRNPYSIVLLD 521
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 522 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 569
>gi|379794996|ref|YP_005324994.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus subsp. aureus MSHR1132]
gi|356871986|emb|CCE58325.1| ATP-dependent Clp protease ATP-binding subunit clpC [Staphylococcus
aureus subsp. aureus MSHR1132]
Length = 818
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|306831532|ref|ZP_07464690.1| ATP-dependent Clp protease [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|304426317|gb|EFM29431.1| ATP-dependent Clp protease [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
Length = 702
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D + L+GT Y
Sbjct: 450 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSD--RTAVSKLIGTTAGYVGYDD 507
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 508 NSNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 557
>gi|288905450|ref|YP_003430672.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
gallolyticus UCN34]
gi|325978440|ref|YP_004288156.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus gallolyticus subsp. gallolyticus ATCC
BAA-2069]
gi|386337895|ref|YP_006034064.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
gi|288732176|emb|CBI13741.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
gallolyticus UCN34]
gi|325178368|emb|CBZ48412.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus gallolyticus subsp. gallolyticus ATCC
BAA-2069]
gi|334280531|dbj|BAK28105.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
gallolyticus subsp. gallolyticus ATCC 43143]
Length = 702
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D + L+GT Y
Sbjct: 450 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSD--RTAVSKLIGTTAGYVGYDD 507
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 508 NSNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 557
>gi|421276907|ref|ZP_15727727.1| hypothetical protein SPAR10_0836 [Streptococcus mitis SPAR10]
gi|395876188|gb|EJG87264.1| hypothetical protein SPAR10_0836 [Streptococcus mitis SPAR10]
Length = 700
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + + ++ + FL G +GK LA +A
Sbjct: 407 DMGHRLQTKVIGQDKAVEAVAKAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 466
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 467 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNNNTLTERVRRNPYSIVLLD 524
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 525 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 572
>gi|322386189|ref|ZP_08059822.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
cristatus ATCC 51100]
gi|321269769|gb|EFX52696.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
cristatus ATCC 51100]
Length = 704
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 29/132 (21%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ D + +DM + +D + L+GT Y
Sbjct: 449 FLFVGPTGVGKTELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 506
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ ++L+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 507 NNNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 566
Query: 605 KGDSSNYEERIE 616
YE +E
Sbjct: 567 SNAGFGYEAGLE 578
>gi|297172680|gb|ADI23647.1| hypothetical protein [uncultured Gemmatimonadales bacterium
HF4000_15H13]
Length = 826
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 23/142 (16%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAESVFGS 536
L + + Q D+I +I + ++ K F+ G +GK LA ++AE +F
Sbjct: 519 LHKRIVGQQDAIEAISRAIRRSRAGLKDPRRPIGSFIFSGPTGVGKTELARALAEFLFAD 578
Query: 537 TDLLFHIDMRKRNDGVS--------------SHSEMLMGTLKNYEKLVVLVEDIDLADPQ 582
D L +DM + + S S L ++ VVL+++I+ A P
Sbjct: 579 RDALIRVDMSEYMEKFSVSRLIGAPPGYVGYEDSGALTKAVRRRPYSVVLLDEIEKAHPD 638
Query: 583 ----FIKILADGFETENFGKVI 600
+++L +G T+N+G+VI
Sbjct: 639 VFNILLQVLDEGHLTDNYGRVI 660
>gi|337283235|ref|YP_004622706.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
parasanguinis ATCC 15912]
gi|335370828|gb|AEH56778.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
parasanguinis ATCC 15912]
Length = 709
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + ++ + FL G +GK LA +A
Sbjct: 404 DMGHRLQTKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 463
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 464 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRRNPYSIVLLD 521
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 522 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 569
>gi|297582418|ref|YP_003698198.1| ATPase AAA-2 domain-containing protein [Bacillus selenitireducens
MLS10]
gi|297140875|gb|ADH97632.1| ATPase AAA-2 domain protein [Bacillus selenitireducens MLS10]
Length = 815
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 18/107 (16%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHID----MRKRND--------GVSSHSE-- 557
F+ G +GK LA ++AE++FG D + ID M K N G H E
Sbjct: 547 FIFLGPTGVGKTELARAVAETLFGDEDAIIRIDMSEYMEKHNTSRLVGSPPGYVGHDEGG 606
Query: 558 MLMGTLKNYEKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
L ++ V+L+++I+ A P+ +++L DGF T++ G+ +
Sbjct: 607 QLTEKVRRKPYSVILLDEIEKAHPEVFNILLQVLEDGFLTDSKGRRV 653
>gi|254255396|ref|ZP_04948712.1| ATPase with chaperone activity ATP-binding subunit [Burkholderia
dolosa AUO158]
gi|124901133|gb|EAY71883.1| ATPase with chaperone activity ATP-binding subunit [Burkholderia
dolosa AUO158]
Length = 1065
Score = 43.5 bits (101), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 29/145 (20%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKKA-----TWFLLQGNDTIGKRRLALSIAESVFGS 536
L+E V Q +++ ++ + + ++ +A FL G +GK LA ++AE VFG
Sbjct: 736 LRERVIGQDEAVTAVSDAVRRARAGLQARRRPTAVFLFLGPTGVGKTELAKALAEVVFGD 795
Query: 537 TDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVEDIDLA 579
D + +DM ++ + H+ L+G+ Y E++ VVL ++I+ A
Sbjct: 796 EDAIVRVDM---SEYMERHAVARLIGSPPGYVGYDEGGQLTERVRRRPYSVVLFDEIEKA 852
Query: 580 DPQ----FIKILADGFETENFGKVI 600
P +++ DG T+ G+V+
Sbjct: 853 HPDVYNVLLQVFDDGRLTDGKGRVV 877
Score = 40.0 bits (92), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 74 DIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPV 133
+I+ + EV R+++ N V++G+ A+V R+ GDVP+ L+ +++F+ V
Sbjct: 415 EIETMVEVLARRRKNNPVLIGEPGVGKTAVVEGLAQRIVSGDVPESLRAKRLVEFNVNAV 474
Query: 134 TLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASC 193
+ E E + ++ VD +T+ +++ ++ V + + IA+
Sbjct: 475 VAGAKYRGEFEERIQQI---VDEITANRDSVVLFVDEIHTIVGAGQGGGEGGLD--IANV 529
Query: 194 YNP 196
+ P
Sbjct: 530 FKP 532
>gi|395244491|ref|ZP_10421457.1| ATP-dependent protease [Lactobacillus hominis CRBIP 24.179]
gi|394483245|emb|CCI82465.1| ATP-dependent protease [Lactobacillus hominis CRBIP 24.179]
Length = 706
Score = 43.5 bits (101), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 22/109 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FLL G +GK LA +A +FG D L +DM + D ++ + L+G+ Y
Sbjct: 423 FLLTGPTGVGKTELAKQLAVKLFGKADALVRLDMSEYQDQMAVNK--LIGSAPGYVGYGE 480
Query: 567 -----EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ ++L+++I+ A+PQ ++I+ DG T+ G+ I
Sbjct: 481 GGQLTEKIRHQPYSLILLDEIEKANPQVFNALLQIMDDGRLTDAQGRTI 529
Score = 39.7 bits (91), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 75 IKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHF---- 130
I V E+ R+K+ N V+ G ++V R+ GDVP++LK+ H+I+ +
Sbjct: 79 IDQVIEILSRRKKNNPVLTGPAGVGKTSVVEGLAQRIVDGDVPEKLKKAHIIELNINELV 138
Query: 131 APVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEI 190
A +LR +E +LK+ +D I++ +L V +++ NN +G+
Sbjct: 139 AGTSLRGSFEE-------KLKKIIDKAKG-DKNVILFIDELHNIVGAGSTDSENN-SGDA 189
Query: 191 ASCYNP 196
A+ P
Sbjct: 190 ANILKP 195
>gi|320530200|ref|ZP_08031270.1| negative regulator of genetic competence ClpC/MecB [Selenomonas
artemidis F0399]
gi|320137633|gb|EFW29545.1| negative regulator of genetic competence ClpC/MecB [Selenomonas
artemidis F0399]
Length = 835
Score = 43.5 bits (101), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 35/166 (21%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L K + V Q ++IH++ + + ++ K FL G+ +GK LA ++AES
Sbjct: 509 LEKTIGRRVIGQDEAIHAVSKAVRRARAGVKDPRRPIGSFLFLGSTGVGKTELARALAES 568
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEM-LMGTLKNYEKL----------------VVLVED 575
VFG+ D + DM ++ + H+ L+G Y +VL ++
Sbjct: 569 VFGTEDAIIRFDM---SEYMEKHTTARLVGAPPGYVGYEEGGQLTDAVRKKPFSIVLFDE 625
Query: 576 IDLADP----QFIKILADGFETENFGKV------IFVLTKGDSSNY 611
++ A P +++L DG T+ G V I ++T +N+
Sbjct: 626 VEKAHPDVFHMLLQVLEDGRLTDGQGTVTDFRNTIIIMTSNAGANH 671
>gi|418018478|ref|ZP_12658034.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
salivarius M18]
gi|345527327|gb|EGX30638.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
salivarius M18]
Length = 701
Score = 43.5 bits (101), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + ++ + FL G +GK LA +A
Sbjct: 406 DMGHRLQTKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 465
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 466 DMFGTKDAIIRLDMSEYSD--RTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIVLLD 523
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 524 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 571
>gi|387784736|ref|YP_006070819.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
salivarius JIM8777]
gi|338745618|emb|CCB95984.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
salivarius JIM8777]
Length = 701
Score = 43.5 bits (101), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + ++ + FL G +GK LA +A
Sbjct: 406 DMGHRLQTKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 465
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 466 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRRNPYSIVLLD 523
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 524 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 571
>gi|418036725|ref|ZP_12675123.1| hypothetical protein LDBUL1519_01823 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
gi|354686743|gb|EHE86873.1| hypothetical protein LDBUL1519_01823 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1519]
Length = 696
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D + L+GT Y
Sbjct: 443 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 500
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
EK+ ++L+++I+ ADPQ I ++L DG T+ G +
Sbjct: 501 NSNTLTEKVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTV 550
>gi|357637355|ref|ZP_09135230.1| ATPase, AAA family [Streptococcus macacae NCTC 11558]
gi|357585809|gb|EHJ53012.1| ATPase, AAA family [Streptococcus macacae NCTC 11558]
Length = 700
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D + L+GT Y
Sbjct: 445 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 502
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ ++L+++I+ ADPQ I ++L DG T+ G I
Sbjct: 503 NSNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 552
>gi|238852945|ref|ZP_04643345.1| chaperone protein ClpB [Lactobacillus gasseri 202-4]
gi|238834451|gb|EEQ26688.1| chaperone protein ClpB [Lactobacillus gasseri 202-4]
Length = 705
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 22/109 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FLL G +GK LA +A +FG D L +DM + D ++ + L+G+ Y
Sbjct: 425 FLLTGPTGVGKTELAKQLAIKLFGKADALVRLDMSEYQDQMAVNK--LIGSAPGYVGYGE 482
Query: 567 -----EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ ++L+++I+ A+PQ ++I+ DG T+ G+ I
Sbjct: 483 GGQLTEKIRHQPYSLILLDEIEKANPQVFNALLQIMDDGRLTDAQGRTI 531
Score = 39.3 bits (90), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 78/182 (42%), Gaps = 32/182 (17%)
Query: 75 IKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHF---- 130
I V E+ R+K+ N V+ G ++V R+ GDVP++LK H+I+ +
Sbjct: 81 IDQVIEILSRRKKNNPVLTGPAGVGKTSVVEGLAQRIVDGDVPEKLKNAHIIELNINELV 140
Query: 131 APVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEI 190
A +LR +E +LK+ +D I++ +L V +++ NN +G+
Sbjct: 141 AGTSLRGSFEE-------KLKKIIDKAKG-DKNVILFIDELHNIVGAGSTDSENN-SGDA 191
Query: 191 ASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVS 250
A+ P + +S + L+ + Y + + + P L ++ Q V
Sbjct: 192 ANILKP----------------ALASGEICLIGATTTSEYQQIE-KDPALARRF--QPVQ 232
Query: 251 IP 252
+P
Sbjct: 233 VP 234
>gi|23097548|ref|NP_691014.1| ATP-dependent Clp protease [Oceanobacillus iheyensis HTE831]
gi|54035854|sp|Q8EU05.1|CLPB_OCEIH RecName: Full=Chaperone protein ClpB
gi|22775771|dbj|BAC12049.1| ATP-dependent Clp protease (ATP-binding subunit) [Oceanobacillus
iheyensis HTE831]
Length = 809
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 75/150 (50%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ K+L + V Q ++++++ + + ++ K F+ G +GK LA ++AE
Sbjct: 504 NMEKILHDRVIGQSEAVNAVAKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 563
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSH-SEMLMGTLKNY----------EKL------VVLVE 574
+F D + IDM ++ + H + L+G+ Y EK+ VVL++
Sbjct: 564 VMFADEDAMIRIDM---SEYMERHATSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLD 620
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+++ A P+ +++L DG T++ G+V+
Sbjct: 621 EVEKAHPEVFNILLQVLEDGRLTDSKGRVV 650
>gi|87309320|ref|ZP_01091456.1| negative regulator of genetic competence ClpC/MecB [Blastopirellula
marina DSM 3645]
gi|87287959|gb|EAQ79857.1| negative regulator of genetic competence ClpC/MecB [Blastopirellula
marina DSM 3645]
Length = 849
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 35/155 (22%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA----KKATW-FLLQGNDTIGKRRLALSIAESVFGS 536
L V Q D+I ++ + + +S K+ T F+ G +GK LA ++AE +FG
Sbjct: 521 LHRKVISQHDAIKAVSKAVRRSRSGLKDPKRPTGCFVFAGPTGVGKTLLAKALAEFMFGD 580
Query: 537 TDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVEDIDLA 579
D L IDM ++ + H+ L+G Y EK+ VVL+++I+ A
Sbjct: 581 ADALIQIDM---SEYMEKHNVSRLIGAPPGYVGYEEGGQLTEKIRRRPYAVVLLDEIEKA 637
Query: 580 DP----QFIKILADGFETENFGK------VIFVLT 604
P ++++ +G T++FG+ VI ++T
Sbjct: 638 HPDVFNMLLQVMEEGRLTDSFGRNVDFRNVILIMT 672
>gi|15806137|ref|NP_294841.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Deinococcus
radiodurans R1]
gi|6458849|gb|AAF10687.1|AE001961_6 ATP-dependent Clp protease, ATP-binding subunit ClpC [Deinococcus
radiodurans R1]
Length = 747
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
DL + L + V Q D++ ++ + + + + FL G +GK LA ++A
Sbjct: 442 DLEEQLNDQVYGQPDAVKALTSAMRRARVGLGGRTRVSASFLFVGPSGVGKTHLAKALAR 501
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL----------------VVLVE 574
++FGS L +DM + +G HS L+G+ Y V+L++
Sbjct: 502 TLFGSERALIRVDMSEFQEG---HSISKLIGSPPGYVGFEQGGRLTEAVRRQPFSVILLD 558
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P F+++L DG T+ G+ +
Sbjct: 559 EIEKAHPDIYNTFLQVLDDGRLTDGQGRTV 588
>gi|421284472|ref|ZP_15735250.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae GA60190]
gi|395888392|gb|EJG99403.1| phospho-N-acetylmuramoyl-pentapeptide-transferase [Streptococcus
pneumoniae GA60190]
Length = 691
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + + ++ + FL G +GK LA +A
Sbjct: 398 DMGHRLQTKVIGQDKAVEAVAKAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 457
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ ++L++
Sbjct: 458 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRRNPYSIILLD 515
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 516 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 563
>gi|270291142|ref|ZP_06197365.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Pediococcus
acidilactici 7_4]
gi|270280538|gb|EFA26373.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Pediococcus
acidilactici 7_4]
Length = 823
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L K+L E+V Q +++ S+ + +S K F+ G +GK LA ++A
Sbjct: 508 NLEKILHEHVIGQDEAVSSVARAIRRARSGLKNPKRPIGSFMFLGPTGVGKTELAKTLAN 567
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
+FGS D + IDM + + S+ L+G+ Y E++ VVL ++
Sbjct: 568 VMFGSEDNMIRIDMSEYMERFSTSR--LVGSAPGYVGYDEGGQLTEQVRRKPYSVVLFDE 625
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++ DGF T++ G+ +
Sbjct: 626 VEKAHPDVFNLLLQVFDDGFLTDSKGRRV 654
>gi|256847923|ref|ZP_05553368.1| ATP-dependent chaperone ClpB [Lactobacillus coleohominis 101-4-CHN]
gi|256715612|gb|EEU30588.1| ATP-dependent chaperone ClpB [Lactobacillus coleohominis 101-4-CHN]
Length = 736
Score = 43.5 bits (101), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 29/171 (16%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVEC-----KSAKKA 509
E K + +G +L + Q DL K L +V Q +++ I + KS +
Sbjct: 407 EEKTNIPVG--DLQKQEETQLKDLDKKLDAHVIGQTEAVDKIARAIRRNRIGLNKSGRPI 464
Query: 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY--- 566
FL G +GK A +A+ +FGS D + DM + D +S+ L+G+ Y
Sbjct: 465 GSFLFVGPTGVGKTETAKQLAQQLFGSKDAMIRFDMSEYMDKMSTSK--LIGSAPGYVGY 522
Query: 567 -------EKL------VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
E++ ++L+++++ A P F++IL DG T++ G+ +
Sbjct: 523 EEAGQLTEQVRRHPYSLILLDEVEKAHPDVMHMFLQILDDGRLTDSQGRTV 573
>gi|358052016|ref|ZP_09146007.1| endopeptidase [Staphylococcus simiae CCM 7213]
gi|357258496|gb|EHJ08562.1| endopeptidase [Staphylococcus simiae CCM 7213]
Length = 816
Score = 43.5 bits (101), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|418088119|ref|ZP_12725284.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47033]
gi|418201631|ref|ZP_12838063.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA52306]
gi|419454742|ref|ZP_13994705.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae EU-NP04]
gi|353755796|gb|EHD36399.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA47033]
gi|353869107|gb|EHE48990.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA52306]
gi|379631183|gb|EHZ95763.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae EU-NP04]
Length = 701
Score = 43.5 bits (101), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + + ++ + FL G +GK LA +A
Sbjct: 408 DMGHRLQTKVIGQDKAVEAVAKAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 467
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ ++L++
Sbjct: 468 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRRNPYSIILLD 525
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 526 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|312863886|ref|ZP_07724124.1| chaperone protein ClpB [Streptococcus vestibularis F0396]
gi|322516203|ref|ZP_08069136.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
vestibularis ATCC 49124]
gi|311101422|gb|EFQ59627.1| chaperone protein ClpB [Streptococcus vestibularis F0396]
gi|322125379|gb|EFX96734.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
vestibularis ATCC 49124]
Length = 701
Score = 43.5 bits (101), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + ++ + FL G +GK LA +A
Sbjct: 406 DMGHRLQTKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 465
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 466 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRRNPYSIVLLD 523
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 524 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 571
>gi|255591162|ref|XP_002535454.1| conserved hypothetical protein [Ricinus communis]
gi|223523058|gb|EEF26929.1| conserved hypothetical protein [Ricinus communis]
Length = 398
Score = 43.5 bits (101), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 59/115 (51%), Gaps = 19/115 (16%)
Query: 140 KEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINH 199
KE++ EL+ K++ +G G ++ G+LK VD+ N F+ + AS +
Sbjct: 289 KEKMGFKFEELRNKLEQ--CLGVGVVLNFGELKVLVDE------NVFSSDAAS------Y 334
Query: 200 LVSEVGKLVSDCNSASSTRVWLM-ATASYQTYMKCQMRQPPLEIQWALQAVSIPS 253
LV ++ L+ D + ++WLM A A+Y+TY K + P +E W L + I S
Sbjct: 335 LVEKLTGLLEDFRN----KLWLMGAAATYETYSKFLGKFPSIEKDWDLHLLPITS 385
>gi|421453048|ref|ZP_15902404.1| ATP-dependent endopeptidase clp ATP-binding subunit clpL
[Streptococcus salivarius K12]
gi|400181357|gb|EJO15624.1| ATP-dependent endopeptidase clp ATP-binding subunit clpL
[Streptococcus salivarius K12]
Length = 701
Score = 43.5 bits (101), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + ++ + FL G +GK LA +A
Sbjct: 406 DMGHRLQTKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 465
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 466 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRRNPYSIVLLD 523
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 524 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 571
>gi|418069700|ref|ZP_12706977.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Pediococcus acidilactici MA18/5M]
gi|427440976|ref|ZP_18925093.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Pediococcus lolii NGRI 0510Q]
gi|357536231|gb|EHJ20262.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Pediococcus acidilactici MA18/5M]
gi|425787224|dbj|GAC45881.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Pediococcus lolii NGRI 0510Q]
Length = 823
Score = 43.5 bits (101), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L K+L E+V Q +++ S+ + +S K F+ G +GK LA ++A
Sbjct: 508 NLEKILHEHVIGQDEAVSSVARAIRRARSGLKNPKRPIGSFMFLGPTGVGKTELAKTLAN 567
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
+FGS D + IDM + + S+ L+G+ Y E++ VVL ++
Sbjct: 568 VMFGSEDNMIRIDMSEYMERFSTSR--LVGSAPGYVGYDEGGQLTEQVRRKPYSVVLFDE 625
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++ DGF T++ G+ +
Sbjct: 626 VEKAHPDVFNLLLQVFDDGFLTDSKGRRV 654
>gi|417921278|ref|ZP_12564770.1| ATPase, AAA family [Streptococcus cristatus ATCC 51100]
gi|342834438|gb|EGU68707.1| ATPase, AAA family [Streptococcus cristatus ATCC 51100]
Length = 703
Score = 43.5 bits (101), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 29/132 (21%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ D + +DM + +D + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ ++L+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 506 NNNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 565
Query: 605 KGDSSNYEERIE 616
YE +E
Sbjct: 566 SNAGFGYEAGLE 577
>gi|282876956|ref|ZP_06285805.1| ATP-dependent chaperone protein ClpB [Prevotella buccalis ATCC
35310]
gi|281300910|gb|EFA93230.1| ATP-dependent chaperone protein ClpB [Prevotella buccalis ATCC
35310]
Length = 863
Score = 43.5 bits (101), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P E+I+ V ++ R+ + N +++G+ + A+V GR+ RGDVP+ LK +
Sbjct: 178 PVIGRDEEIRRVLQILSRRTKNNPILIGEPGTGKTAIVEGLAGRIVRGDVPENLKNKQLY 237
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
+ K E E LK + +T G I++ ++ V
Sbjct: 238 SLDMGALVAGAKYKGEFE---ERLKSVIKEVTHAEGEIILFIDEIHTLV 283
>gi|340399479|ref|YP_004728504.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
salivarius CCHSS3]
gi|387760696|ref|YP_006067673.1| chaperone protein ClpB [Streptococcus salivarius 57.I]
gi|338743472|emb|CCB93982.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
salivarius CCHSS3]
gi|339291463|gb|AEJ52810.1| chaperone protein ClpB [Streptococcus salivarius 57.I]
Length = 701
Score = 43.5 bits (101), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + ++ + FL G +GK LA +A
Sbjct: 406 DMGHRLQTKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 465
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 466 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRRNPYSIVLLD 523
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 524 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 571
>gi|312868109|ref|ZP_07728313.1| ATPase, AAA family [Streptococcus parasanguinis F0405]
gi|311096513|gb|EFQ54753.1| ATPase, AAA family [Streptococcus parasanguinis F0405]
Length = 709
Score = 43.5 bits (101), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + ++ + FL G +GK LA +A
Sbjct: 404 DMGHRLQTKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 463
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 464 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRRNPYSIVLLD 521
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 522 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 569
>gi|419706285|ref|ZP_14233811.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
salivarius PS4]
gi|383283955|gb|EIC81893.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
salivarius PS4]
Length = 694
Score = 43.5 bits (101), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + ++ + FL G +GK LA +A
Sbjct: 399 DMGNRLQTKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 458
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ ++L++
Sbjct: 459 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRRNPYSIILLD 516
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 564
>gi|383754480|ref|YP_005433383.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381366532|dbj|BAL83360.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC
[Selenomonas ruminantium subsp. lactilytica TAM6421]
Length = 832
Score = 43.5 bits (101), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 74/156 (47%), Gaps = 25/156 (16%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGK 522
S+SA+L + L K+L + V Q D++ ++ + + +S K FL G +GK
Sbjct: 501 SESARLLK--LEKILGKRVIGQTDAVKAVAKAIRRARSGLKDPKRPIGSFLFLGPTGVGK 558
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEK 568
LA ++A+++FGS + + DM + + G + E L ++
Sbjct: 559 TELARTLADALFGSEEAIIRFDMSEYMEKHTVSRMVGAPPGYVGYQEGGQLTDAVRRKPY 618
Query: 569 LVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++L+++I+ A P +++L DG T+ G+ +
Sbjct: 619 SIILLDEIEKAHPDVFNILLQVLDDGRLTDGQGRTV 654
>gi|116514872|ref|YP_813778.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|385816540|ref|YP_005852931.1| Putative Clp-like ATP-dependent protease, ATP-binding subunit
[Lactobacillus delbrueckii subsp. bulgaricus 2038]
gi|418029799|ref|ZP_12668323.1| hypothetical protein LDBUL1632_01117 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
gi|116094187|gb|ABJ59340.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|325126577|gb|ADY85907.1| Putative Clp-like ATP-dependent protease, ATP-binding subunit
[Lactobacillus delbrueckii subsp. bulgaricus 2038]
gi|354689007|gb|EHE89024.1| hypothetical protein LDBUL1632_01117 [Lactobacillus delbrueckii
subsp. bulgaricus CNCM I-1632]
Length = 696
Score = 43.5 bits (101), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D + L+GT Y
Sbjct: 443 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 500
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
EK+ ++L+++I+ ADPQ I ++L DG T+ G +
Sbjct: 501 NSNTLTEKVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTV 550
>gi|387878913|ref|YP_006309216.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperone
[Streptococcus parasanguinis FW213]
gi|386792370|gb|AFJ25405.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperone
[Streptococcus parasanguinis FW213]
Length = 709
Score = 43.5 bits (101), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + ++ + FL G +GK LA +A
Sbjct: 404 DMGHRLQTKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 463
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 464 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRRNPYSIVLLD 521
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 522 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 569
>gi|422844836|ref|ZP_16891546.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
gi|325684966|gb|EGD27107.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
Length = 391
Score = 43.5 bits (101), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D + L+GT Y
Sbjct: 138 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 195
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
EK+ ++L+++I+ ADPQ I ++L DG T+ G +
Sbjct: 196 NSNTLTEKVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTV 245
>gi|309799695|ref|ZP_07693912.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
infantis SK1302]
gi|308116651|gb|EFO54110.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
infantis SK1302]
Length = 700
Score = 43.5 bits (101), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + ++ + FL G +GK LA +A
Sbjct: 407 DMGHRLQTKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 466
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 467 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNNNTLTERVRRNPYSIVLLD 524
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 525 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 572
>gi|326335913|ref|ZP_08202090.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Capnocytophaga
sp. oral taxon 338 str. F0234]
gi|325691877|gb|EGD33839.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Capnocytophaga
sp. oral taxon 338 str. F0234]
Length = 876
Score = 43.5 bits (101), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 25/158 (15%)
Query: 466 ELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTI 520
E S+ KL S L K++ E V Q ++I IV+ + ++ K F+ G +
Sbjct: 548 EQSEMKKL--SSLEKLITEKVIGQEEAISKIVKAIKRNRTGLKDPNRPIGSFIFIGQTGV 605
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNY 566
GK +LA +A +F S + L +DM + + G H E L ++
Sbjct: 606 GKTQLAKILARELFDSEESLIRLDMSEYMEKFTTSRLIGAPPGYVGHEEGGQLTERVRRK 665
Query: 567 EKLVVLVEDIDLADP----QFIKILADGFETENFGKVI 600
V+L+++I+ A P +++L DGF T++ G+ +
Sbjct: 666 PYAVILLDEIEKAHPDVFNMLLQVLDDGFLTDSLGRKV 703
>gi|407797861|ref|ZP_11144776.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Salimicrobium
sp. MJ3]
gi|407017624|gb|EKE30381.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Salimicrobium
sp. MJ3]
Length = 821
Score = 43.5 bits (101), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L V Q +++ S+ + + ++ K F+ G +GK LA ++AES
Sbjct: 512 LEDTLHNRVIGQEEAVDSVAKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 571
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + HS L+G+ Y EK+ VVL+++
Sbjct: 572 MFGEEDAMIRVDM---SEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRQKPYSVVLLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+V+
Sbjct: 629 VEKAHPDVFNVLLQVLEDGRLTDGKGRVV 657
>gi|347524574|ref|YP_004831322.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
ruminis ATCC 27782]
gi|345283533|gb|AEN77386.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
ruminis ATCC 27782]
Length = 699
Score = 43.5 bits (101), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA IA +FG D + +DM + +D + L+GT Y
Sbjct: 446 FLFVGPTGVGKTELAKQIALDMFGKKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 503
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 504 NNNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 553
>gi|333904861|ref|YP_004478732.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
parauberis KCTC 11537]
gi|333120126|gb|AEF25060.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
parauberis KCTC 11537]
Length = 702
Score = 43.5 bits (101), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ ++L+++I+ ADPQ I ++L DG T+ G I
Sbjct: 506 NQYTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 555
>gi|329117468|ref|ZP_08246185.1| negative regulator of genetic competence ClpC/MecB [Streptococcus
parauberis NCFD 2020]
gi|326907873|gb|EGE54787.1| negative regulator of genetic competence ClpC/MecB [Streptococcus
parauberis NCFD 2020]
gi|456370745|gb|EMF49641.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
parauberis KRS-02109]
Length = 702
Score = 43.5 bits (101), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ ++L+++I+ ADPQ I ++L DG T+ G I
Sbjct: 506 NQYTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 555
>gi|322391492|ref|ZP_08064961.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
peroris ATCC 700780]
gi|321145575|gb|EFX40967.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
peroris ATCC 700780]
Length = 700
Score = 43.5 bits (101), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + ++ + FL G +GK LA +A
Sbjct: 407 DMGHRLQTKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 466
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 467 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRRNPYSIVLLD 524
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 525 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 572
>gi|104774741|ref|YP_619721.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
gi|103423822|emb|CAI98840.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
delbrueckii subsp. bulgaricus ATCC 11842]
Length = 696
Score = 43.5 bits (101), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D + L+GT Y
Sbjct: 443 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 500
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
EK+ ++L+++I+ ADPQ I ++L DG T+ G +
Sbjct: 501 NSNTLTEKVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTV 550
>gi|418976681|ref|ZP_13524538.1| ATPase, AAA family [Streptococcus mitis SK575]
gi|383351094|gb|EID28922.1| ATPase, AAA family [Streptococcus mitis SK575]
Length = 701
Score = 43.5 bits (101), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + + ++ + FL G +GK LA +A
Sbjct: 408 DMGHRLQTKVIGQDKAVEAVAKAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 467
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ ++L++
Sbjct: 468 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRRNPYSIILLD 525
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 526 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|304385424|ref|ZP_07367769.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Pediococcus
acidilactici DSM 20284]
gi|304328631|gb|EFL95852.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Pediococcus
acidilactici DSM 20284]
Length = 823
Score = 43.5 bits (101), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L K+L E+V Q +++ S+ + +S K F+ G +GK LA ++A
Sbjct: 508 NLEKILHEHVIGQDEAVSSVARAIRRARSGLKNPKRPIGSFMFLGPTGVGKTELAKTLAN 567
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
+FGS D + IDM + + S+ L+G+ Y E++ VVL ++
Sbjct: 568 VMFGSEDNMIRIDMSEYMERFSTSR--LVGSAPGYVGYDEGGQLTEQVRRKPYSVVLFDE 625
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++ DGF T++ G+ +
Sbjct: 626 VEKAHPDVFNLLLQVFDDGFLTDSKGRRV 654
>gi|288555417|ref|YP_003427352.1| AAA ATPase [Bacillus pseudofirmus OF4]
gi|288546577|gb|ADC50460.1| AAA-2 domain ATPase modulates CtsR MecA [Bacillus pseudofirmus OF4]
Length = 718
Score = 43.5 bits (101), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 31/172 (18%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW--- 511
E K + +G + +D K++ +L L+ V Q ++ + + + ++ KA
Sbjct: 402 EKKTGIPVGKLQANDQEKMK--NLADQLRGKVIGQEKAVEKVAKAVRRSRAGLKAKHRPI 459
Query: 512 --FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY-- 566
FL G +GK L S+AE +FG+ + + +DM ++ + HS L+G+ Y
Sbjct: 460 GSFLFVGPTGVGKTELTKSLAEQLFGTKEAMVRLDM---SEYMEKHSVSKLIGSPPGYVG 516
Query: 567 --------EKL------VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
EK+ ++L+++I+ A P F++IL DG T++ G+ +
Sbjct: 517 HDEAGQLTEKVRRNPYSIILLDEIEKAHPDVQHMFLQILEDGRLTDSQGRTV 568
>gi|55823518|ref|YP_141959.1| ATP-dependent proteinase ATP-binding subunit [Streptococcus
thermophilus CNRZ1066]
gi|55739503|gb|AAV63144.1| ATP-dependent proteinase ATP-binding subunit [Streptococcus
thermophilus CNRZ1066]
Length = 699
Score = 43.5 bits (101), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + ++ + FL G +GK LA +A
Sbjct: 404 DMGNRLQAKVIGQDKAVEAVARSIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 463
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ ++L++
Sbjct: 464 DLFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRRNPYSIILLD 521
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF I + T YE
Sbjct: 522 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTIIIATSNAGFGYE 569
>gi|457095608|gb|EMG26079.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
parauberis KRS-02083]
Length = 702
Score = 43.5 bits (101), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ ++L+++I+ ADPQ I ++L DG T+ G I
Sbjct: 506 NQYTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 555
>gi|402301968|ref|ZP_10821089.1| negative regulator of genetic competence ClpC/MecB [Selenomonas sp.
FOBRC9]
gi|400381253|gb|EJP34056.1| negative regulator of genetic competence ClpC/MecB [Selenomonas sp.
FOBRC9]
Length = 835
Score = 43.5 bits (101), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 35/166 (21%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L K + V Q ++IH++ + + ++ K FL G+ +GK LA ++AES
Sbjct: 509 LEKTIGRRVIGQDEAIHAVSKAVRRARAGVKDPRRPIGSFLFLGSTGVGKTELARALAES 568
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEM-LMGTLKNYEKL----------------VVLVED 575
VFG+ D + DM ++ + H+ L+G Y +VL ++
Sbjct: 569 VFGTEDAIIRFDM---SEYMEKHTTARLVGAPPGYVGYEEGGQLTDAVRKKPFSIVLFDE 625
Query: 576 IDLADP----QFIKILADGFETENFGKV------IFVLTKGDSSNY 611
++ A P +++L DG T+ G V I ++T +N+
Sbjct: 626 VEKAHPDVFHMLLQVLEDGRLTDGQGTVTDFRNTIIIMTSNAGANH 671
>gi|399517318|ref|ZP_10758870.1| ClpB protein [Leuconostoc pseudomesenteroides 4882]
gi|398647724|emb|CCJ66897.1| ClpB protein [Leuconostoc pseudomesenteroides 4882]
Length = 547
Score = 43.5 bits (101), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 33/189 (17%)
Query: 437 KPQGVEPR--LDSLKSNEGKEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIH 494
KPQ ++ + LD + E K + +G EL ++ Q DL K L E+V Q +++
Sbjct: 209 KPQNIDEKDILDII------EEKTDIPVG--ELKENEANQLQDLDKNLSEHVVGQENAVE 260
Query: 495 SIVEVLVE-----CKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRN 549
++ + + KS + FL G +GK A +A+ +FGS D + DM +
Sbjct: 261 TVAKAVRRNRIGLTKSGRPIGSFLFVGPTGVGKTETAKQLAKEMFGSEDAMIRFDMSEYM 320
Query: 550 D------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADP----QFIKILADGF 591
+ G + E L ++ + +VL ++++ A P F++IL DG
Sbjct: 321 EKHTASKMIGAPAGYVGYEEAGQLTEQVRRHPYSLVLFDEVEKAHPDIMNMFLQILDDGR 380
Query: 592 ETENFGKVI 600
T+ G V+
Sbjct: 381 LTDAQGHVV 389
>gi|357398262|ref|YP_004910187.1| ATP-dependent Clp protease ATP-binding subunit clpC [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|337764671|emb|CCB73380.1| ATP-dependent Clp protease ATP-binding subunit clpC [Streptomyces
cattleya NRRL 8057 = DSM 46488]
Length = 840
Score = 43.5 bits (101), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 67/142 (47%), Gaps = 23/142 (16%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
L + V Q +++ ++ + ++ ++ + FL G +GK LA ++AE++FGS
Sbjct: 541 LHQRVIGQDEAVTAVADAVLRSRAGLADPNRPIGSFLFLGPTGVGKTELARALAEALFGS 600
Query: 537 TDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADPQ 582
D + +DM + + G H E L ++ + +VL+++++ A P
Sbjct: 601 EDRMVRLDMSEYQERHTVSRLVGAPPGYVGHDEAGQLTEAVRRHPYSLVLLDEVEKAHPD 660
Query: 583 ----FIKILADGFETENFGKVI 600
+++L DG T+ G+ +
Sbjct: 661 VFNTLLQVLDDGRLTDAQGRTV 682
>gi|227889239|ref|ZP_04007044.1| ATP-dependent protease [Lactobacillus johnsonii ATCC 33200]
gi|227850468|gb|EEJ60554.1| ATP-dependent protease [Lactobacillus johnsonii ATCC 33200]
Length = 704
Score = 43.5 bits (101), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 22/109 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FLL G +GK LA +A +FG D L +DM + D ++ + L+G+ Y
Sbjct: 424 FLLTGPTGVGKTELAKQLAIKLFGKADALVRLDMSEYQDQMAVNK--LIGSAPGYVGYGE 481
Query: 567 -----EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ ++L+++I+ A+PQ ++I+ DG T+ G+ I
Sbjct: 482 GGQLTEKIRHQPYSLILLDEIEKANPQVFNALLQIMDDGRLTDAQGRTI 530
Score = 39.3 bits (90), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 13/126 (10%)
Query: 75 IKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHF---- 130
I V E+ R+K+ N V+ G ++V R+ GDVP++LK H+I+ +
Sbjct: 80 IDQVIEILSRRKKNNPVLTGPAGVGKTSVVEGLAQRIVDGDVPEKLKNAHIIELNINELV 139
Query: 131 APVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEI 190
A +LR +E +LK+ +D I++ +L V +++ NN +G+
Sbjct: 140 AGTSLRGSFEE-------KLKKIIDKAKG-DKNVILFIDELHNIVGAGSTDSENN-SGDA 190
Query: 191 ASCYNP 196
A+ P
Sbjct: 191 ANILKP 196
>gi|386354296|ref|YP_006052542.1| Clp protease ATP binding subunit [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|365804804|gb|AEW93020.1| Clp protease ATP binding subunit [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 845
Score = 43.5 bits (101), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 67/142 (47%), Gaps = 23/142 (16%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
L + V Q +++ ++ + ++ ++ + FL G +GK LA ++AE++FGS
Sbjct: 546 LHQRVIGQDEAVTAVADAVLRSRAGLADPNRPIGSFLFLGPTGVGKTELARALAEALFGS 605
Query: 537 TDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADPQ 582
D + +DM + + G H E L ++ + +VL+++++ A P
Sbjct: 606 EDRMVRLDMSEYQERHTVSRLVGAPPGYVGHDEAGQLTEAVRRHPYSLVLLDEVEKAHPD 665
Query: 583 ----FIKILADGFETENFGKVI 600
+++L DG T+ G+ +
Sbjct: 666 VFNTLLQVLDDGRLTDAQGRTV 687
>gi|417751523|ref|ZP_12399815.1| ATPase, AAA family [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
gi|333772699|gb|EGL49520.1| ATPase, AAA family [Streptococcus dysgalactiae subsp. equisimilis
SK1249]
Length = 634
Score = 43.5 bits (101), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 28/145 (19%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
L+E+V Q ++ ++ + ++ + FL G +GK LA +A +FGS
Sbjct: 413 LKEHVIGQDGAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDLFGS 472
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVEDIDLA 579
+ + +DM + +D + L+GT Y E++ +VL+++I+ A
Sbjct: 473 KEAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNNNTLTERVRRNPYAIVLLDEIEKA 530
Query: 580 DPQFI----KILADGFETENFGKVI 600
DPQ I ++L DG T+ G I
Sbjct: 531 DPQVITLLLQVLDDGRLTDGQGNTI 555
>gi|332881906|ref|ZP_08449548.1| ATPase family protein [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332680141|gb|EGJ53096.1| ATPase family protein [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 854
Score = 43.5 bits (101), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 72/150 (48%), Gaps = 27/150 (18%)
Query: 476 SDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIA 530
++L +++ + Q +++ +V+ + ++ K F+ G +GK +LA +A
Sbjct: 539 AELSAIMKSKIIGQDEAVEKVVKAIKRNRTGLKDPNKPIGSFIFLGQTGVGKTQLAKVLA 598
Query: 531 ESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVE 574
+ +F S D + IDM + + S+ L+G Y EK+ VVL++
Sbjct: 599 KELFDSEDTMVRIDMSEYMEKFSTTR--LIGAPPGYVGYEEGGQLTEKVRRKPYSVVLLD 656
Query: 575 DIDLADP----QFIKILADGFETENFGKVI 600
+I+ A P +++L DGF T++ G+ I
Sbjct: 657 EIEKAHPDVFNMLLQVLDDGFLTDSLGRKI 686
>gi|322373543|ref|ZP_08048079.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sp. C150]
gi|321278585|gb|EFX55654.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sp. C150]
Length = 701
Score = 43.5 bits (101), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + ++ + FL G +GK LA +A
Sbjct: 406 DMGNRLQTKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 465
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ ++L++
Sbjct: 466 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRRNPYSIILLD 523
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 524 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 571
>gi|322390829|ref|ZP_08064339.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
parasanguinis ATCC 903]
gi|321142499|gb|EFX37967.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
parasanguinis ATCC 903]
Length = 709
Score = 43.5 bits (101), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + ++ + FL G +GK LA +A
Sbjct: 404 DMGHRLQTKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 463
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 464 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRRNPYSIVLLD 521
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 522 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 569
>gi|425738218|ref|ZP_18856484.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
massiliensis S46]
gi|425480228|gb|EKU47396.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
massiliensis S46]
Length = 815
Score = 43.5 bits (101), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L L E V Q D++ SI + + ++ K F+ G +GK LA ++AE
Sbjct: 501 NLEDTLHERVIGQKDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
S+FG D + +DM ++ + H+ L+G Y EK+ VVL +
Sbjct: 561 SMFGEEDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVVLFD 617
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P+ +++L DG T+ G+ +
Sbjct: 618 EIEKAHPEVFNILLQVLDDGHLTDTKGRKV 647
>gi|406666957|ref|ZP_11074720.1| Negative regulator of genetic competence ClpC/MecB [Bacillus
isronensis B3W22]
gi|405385240|gb|EKB44676.1| Negative regulator of genetic competence ClpC/MecB [Bacillus
isronensis B3W22]
Length = 814
Score = 43.5 bits (101), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 31/159 (19%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGK 522
++SAKL +L + L + V Q +++ +I + ++ K F+ G +GK
Sbjct: 496 AESAKLL--NLEEELHKRVVGQGEAVEAISRAIRRARAGLKDPKRPIGSFIFLGPTGVGK 553
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL-- 569
LA ++AE +FG D + +DM ++ + HS L+G+ Y EK+
Sbjct: 554 TELARALAEVMFGDEDAMIRVDM---SEYMEKHSTSRLVGSPPGYVGFDDGGQLTEKVRR 610
Query: 570 ----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
VVL+++I+ A P +++L DG T++ G+V+
Sbjct: 611 KPYSVVLLDEIEKAHPDVFNILLQVLEDGRLTDSKGRVV 649
>gi|429204139|ref|ZP_19195432.1| ATP-binding Clp protease subunit [Lactobacillus saerimneri 30a]
gi|428147638|gb|EKW99861.1| ATP-binding Clp protease subunit [Lactobacillus saerimneri 30a]
Length = 821
Score = 43.1 bits (100), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 33/159 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
+L + L V Q +++ ++ + + +S + F+ G +GK LA ++A+
Sbjct: 510 NLEETLHRQVVGQDEAVVAVAKAIRRARSGLGDPNRPIGSFMFLGPTGVGKTELAKALAQ 569
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
+VFGS D + IDM + + S L+G+ Y EK+ VVL+++
Sbjct: 570 AVFGSEDSMIRIDMSEYMEKYSVSR--LVGSPPGYVGYDEGGQLTEKVRQHPYSVVLLDE 627
Query: 576 IDLADPQ----FIKILADGFETE------NFGKVIFVLT 604
++ A P +++L DG+ T+ NF I ++T
Sbjct: 628 VEKAHPDVFNLLLQVLDDGYLTDSKGRKVNFQNTIIIMT 666
>gi|1314297|gb|AAC44446.1| ClpC ATPase [Listeria monocytogenes]
Length = 825
Score = 43.1 bits (100), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ K+L E V Q ++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 505 NMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 564
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
S+FG D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 565 SMFGDEDSMIRIDMSEYMEKFSTAR--LVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDE 622
Query: 576 IDLADP----QFIKILADGFETENFGKVI 600
I+ A P +++L DG T++ G+V+
Sbjct: 623 IEKAHPDVFNMLLQVLDDGRLTDSKGRVV 651
>gi|336064443|ref|YP_004559302.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
pasteurianus ATCC 43144]
gi|334282643|dbj|BAK30216.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus
pasteurianus ATCC 43144]
Length = 702
Score = 43.1 bits (100), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 77/167 (46%), Gaps = 30/167 (17%)
Query: 460 LALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLL 514
+ + N SD +L+ +L L++ V Q +++ ++ + ++ + FL
Sbjct: 395 VPVSNMGASDIERLK--ELASRLKDKVIGQDEAVEAVSRAIRRNRAGFDEGNRPIGSFLF 452
Query: 515 QGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-------- 566
G +GK LA +A +FGS D + +DM + +D + L+GT Y
Sbjct: 453 VGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSN 510
Query: 567 ---EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ ++L+++I+ ADPQ I ++L DG T+ G I
Sbjct: 511 TLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 557
>gi|268320188|ref|YP_003293844.1| ATP-dependent Clp protease ATP-binding subunit ClpE2 [Lactobacillus
johnsonii FI9785]
gi|262398563|emb|CAX67577.1| ATP-dependent Clp protease ATP-binding subunit ClpE2 [Lactobacillus
johnsonii FI9785]
Length = 704
Score = 43.1 bits (100), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 22/109 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FLL G +GK LA +A +FG D L +DM + D ++ + L+G+ Y
Sbjct: 424 FLLTGPTGVGKTELAKQLAIKLFGKADALVRLDMSEYQDQMAVNK--LIGSAPGYVGYGE 481
Query: 567 -----EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ ++L+++I+ A+PQ ++I+ DG T+ G+ I
Sbjct: 482 GGQLTEKIRHQPYSLILLDEIEKANPQVFNALLQIMDDGRLTDAQGRTI 530
>gi|338733672|ref|YP_004672145.1| ATP-dependent chaperone protein ClpB [Simkania negevensis Z]
gi|336483055|emb|CCB89654.1| ATP-dependent chaperone protein ClpB [Simkania negevensis Z]
Length = 909
Score = 43.1 bits (100), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 25/156 (16%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK-----SAKKATWFLLQGNDTIGK 522
+D+ KL++ D + L E V Q ++H+I E L + +K FL G GK
Sbjct: 581 ADAEKLRKLD--EALGEQVIGQSKAVHAIAEALKAARLGLRDESKPRGVFLCAGTSGTGK 638
Query: 523 RRLALSIAESVFGSTDLLFHIDM--------RKRNDGVS------SHSEMLMGTLKNYEK 568
+A +IA +FG + +DM + R G L LK
Sbjct: 639 TEMAKAIARQIFGDERNMTRLDMSEYQAKENKSRLIGAPPGYVGFDKGGQLTEALKENPY 698
Query: 569 LVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
V+L+++++ A P F+++ +DG T+ G V+
Sbjct: 699 QVILIDEVEKASPDVLTAFLQVFSDGRLTDGQGNVV 734
>gi|393198912|ref|YP_006460754.1| chaperone ATPase [Solibacillus silvestris StLB046]
gi|327438243|dbj|BAK14608.1| ATPase with chaperone activity, ATP-binding subunit [Solibacillus
silvestris StLB046]
Length = 814
Score = 43.1 bits (100), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 31/159 (19%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGK 522
++SAKL +L + L + V Q +++ +I + ++ K F+ G +GK
Sbjct: 496 AESAKLL--NLEEELHKRVVGQGEAVEAISRAIRRARAGLKDPKRPIGSFIFLGPTGVGK 553
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL-- 569
LA ++AE +FG D + +DM ++ + HS L+G+ Y EK+
Sbjct: 554 TELARALAEVMFGDEDAMIRVDM---SEYMEKHSTSRLVGSPPGYVGFDDGGQLTEKVRR 610
Query: 570 ----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
VVL+++I+ A P +++L DG T++ G+V+
Sbjct: 611 KPYSVVLLDEIEKAHPDVFNILLQVLEDGRLTDSKGRVV 649
>gi|229547309|ref|ZP_04436034.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
[Enterococcus faecalis TX1322]
gi|229307548|gb|EEN73535.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
[Enterococcus faecalis TX1322]
Length = 831
Score = 43.1 bits (100), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDTIGKRRLALSIAE 531
+L +L + V Q +++ ++ + +S A+ F+ G +GK LA ++AE
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIRRARSGLKDPARPIGSFMFLGPTGVGKTELAKALAE 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS + L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 571 AMFGSEEALIRVDMSEFMEKYSTSR--LIGSPPGYVGYEEGGQLTEKIRQRPYSVILLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 629 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 657
>gi|300362784|ref|ZP_07058959.1| ATP-dependent protease [Lactobacillus gasseri JV-V03]
gi|300353212|gb|EFJ69085.1| ATP-dependent protease [Lactobacillus gasseri JV-V03]
Length = 705
Score = 43.1 bits (100), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 22/109 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FLL G +GK LA +A +FG D L +DM + D ++ + L+G+ Y
Sbjct: 425 FLLTGPTGVGKTELAKQLAIKLFGKADALVRLDMSEYQDQMAVNK--LIGSAPGYVGYGE 482
Query: 567 -----EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ ++L+++I+ A+PQ ++I+ DG T+ G+ I
Sbjct: 483 GGQLTEKIRHQPYSLILLDEIEKANPQVFNALLQIMDDGRLTDAQGRTI 531
>gi|319791259|ref|YP_004152899.1| type VI secretion ATPase, clpv1 family [Variovorax paradoxus EPS]
gi|315593722|gb|ADU34788.1| type VI secretion ATPase, ClpV1 family [Variovorax paradoxus EPS]
Length = 926
Score = 43.1 bits (100), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 8/147 (5%)
Query: 17 DSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHALFSSQK-------PAS 69
D+S S + +G G +P S + A + + A+ ++K P +
Sbjct: 155 DASPESQMRAQDGTGMG-SGAPGEDSGAMAPAAMGKGDALKKFAVDLTEKAKKGEMDPVT 213
Query: 70 VSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFH 129
E+I+ + ++ +R+++ N ++ G+ A+V F R+ RGDVP +LK ++
Sbjct: 214 GRDEEIRQIVDILMRRRQNNPLLTGEAGVGKTAVVEGFAQRLARGDVPPQLKDVKLLTLD 273
Query: 130 FAPVTLRFMKKEEVEMNLTELKRKVDS 156
+ K E E L ++ +V S
Sbjct: 274 IGLLQAGASMKGEFEQRLRQVIDEVQS 300
>gi|259047337|ref|ZP_05737738.1| negative regulator of genetic competence ClpC/MecB [Granulicatella
adiacens ATCC 49175]
gi|259036033|gb|EEW37288.1| negative regulator of genetic competence ClpC/MecB [Granulicatella
adiacens ATCC 49175]
Length = 825
Score = 43.1 bits (100), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 72/149 (48%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L K L + V Q +++ ++ + +S K FL G+ +GK LA ++AE+
Sbjct: 510 LEKELHQRVIGQEEAVSAVARSIRRARSGLKDPKRPIGSFLFLGSTGVGKTELAKTLAEA 569
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D L IDM ++ + H+ L+G+ Y EK+ V+L+++
Sbjct: 570 MFGDQDALVRIDM---SEYMEKHAVSRLVGSPPGYVGFDEGGQLTEKIRNKPYSVILLDE 626
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T++ G+ +
Sbjct: 627 IEKAHPDVFNILLQVLDDGHLTDSKGRKV 655
>gi|240142554|ref|YP_002967067.1| protein disaggregation chaperone [Methylobacterium extorquens AM1]
gi|240012501|gb|ACS43726.1| protein disaggregation chaperone [Methylobacterium extorquens AM1]
Length = 964
Score = 43.1 bits (100), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 29/162 (17%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDT 519
+EL+ K + L L E V Q ++I ++ + + ++ + FL G
Sbjct: 600 TELTAEEKDKLLKLEDKLHERVIGQEEAIRAVADAVRLARAGLREGRGPTATFLFLGPTG 659
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EK 568
+GK LA ++AE +FG D + IDM + + HS L+G Y EK
Sbjct: 660 VGKTELAKTLAEVIFGDQDAIIRIDMSEYGE---RHSVARLVGAPPGYVGYDEGGQLTEK 716
Query: 569 L------VVLVEDIDLADPQFIKILA----DGFETENFGKVI 600
+ VVL+++I+ A P IL DG T+ G+V+
Sbjct: 717 VRRRPYSVVLLDEIEKAHPDVYNILLQVFDDGRLTDGKGRVV 758
>gi|313679912|ref|YP_004057651.1| ATP-dependent clp protease ATP-binding subunit clpa [Oceanithermus
profundus DSM 14977]
gi|313152627|gb|ADR36478.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Oceanithermus
profundus DSM 14977]
Length = 734
Score = 43.1 bits (100), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 35/155 (22%)
Query: 482 LQENVPWQFDSIHSIVEVLVECK-----SAKKATWFLLQGNDTIGKRRLALSIAESVFGS 536
L+E V Q ++ ++ L + A+ FL G +GK +LA ++AE++FGS
Sbjct: 445 LREKVVGQDQAVRALASALRRARVGLGGRARVTASFLFVGPSGVGKTQLAKALAETLFGS 504
Query: 537 TDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL----------------VVLVEDIDLA 579
L DM + + HS L+G Y VVL+++I+ A
Sbjct: 505 ERALIRFDMSEFQE---PHSISKLIGAPPGYVGYEQGGRLTEAVRRQPFSVVLLDEIEKA 561
Query: 580 DPQ----FIKILADGFETENFG------KVIFVLT 604
P F+++L DG T+ G +VI ++T
Sbjct: 562 HPDVYGAFLQVLDDGRLTDGLGRTVDFRRVILIMT 596
>gi|116630350|ref|YP_815627.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus gasseri ATCC 33323]
gi|420148662|ref|ZP_14655926.1| ATP-dependent proteinase [Lactobacillus gasseri CECT 5714]
gi|116095932|gb|ABJ61084.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus gasseri ATCC 33323]
gi|398399702|gb|EJN53334.1| ATP-dependent proteinase [Lactobacillus gasseri CECT 5714]
Length = 705
Score = 43.1 bits (100), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 22/109 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FLL G +GK LA +A +FG D L +DM + D ++ + L+G+ Y
Sbjct: 425 FLLTGPTGVGKTELAKQLAIKLFGKADALVRLDMSEYQDQMAVNK--LIGSAPGYVGYGE 482
Query: 567 -----EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ ++L+++I+ A+PQ ++I+ DG T+ G+ I
Sbjct: 483 GGQLTEKIRHQPYSLILLDEIEKANPQVFNALLQIMDDGRLTDAQGRTI 531
>gi|419783096|ref|ZP_14308888.1| ATPase, AAA family [Streptococcus oralis SK610]
gi|383182522|gb|EIC75076.1| ATPase, AAA family [Streptococcus oralis SK610]
Length = 701
Score = 43.1 bits (100), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ L+ V Q ++ ++ + + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMVHRLEHKVIGQDKAVEAVAKAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|417809334|ref|ZP_12456016.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
salivarius GJ-24]
gi|335351290|gb|EGM52784.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
salivarius GJ-24]
Length = 702
Score = 43.1 bits (100), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 30/159 (18%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ ++ K L+ V Q ++++++ + ++ + FL G +GK
Sbjct: 397 SDIERLK--EIGKRLKGKVIGQDEAVNAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 454
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FGS D + +DM + +D + L+GT Y E++
Sbjct: 455 TELAKQLALDMFGSKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 512
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
++L+++I+ ADPQ I ++L DG T+ G I
Sbjct: 513 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 551
>gi|328542274|ref|YP_004302383.1| ATPase AAA [Polymorphum gilvum SL003B-26A1]
gi|326412023|gb|ADZ69086.1| ATPase AAA-2 domain protein [Polymorphum gilvum SL003B-26A1]
Length = 968
Score = 43.1 bits (100), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L + L E V Q ++I ++ + + ++ + FL G +GK LA ++AE
Sbjct: 613 LEEKLHERVIGQEEAIRAVADAVRLARAGLREGRGPTATFLFLGPTGVGKTELAKTLAEV 672
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + IDM + + HS L+G Y EK+ VVL+++
Sbjct: 673 IFGDQDAIIRIDMSEYGE---RHSVARLVGAPPGYVGYDEGGQLTEKVRRRPYSVVLLDE 729
Query: 576 IDLADPQFIKILA----DGFETENFGKVI 600
I+ A P IL DG T+ G+V+
Sbjct: 730 IEKAHPDVYNILLQVFDDGRLTDGKGRVV 758
>gi|385839866|ref|YP_005863190.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus
salivarius CECT 5713]
gi|300213987|gb|ADJ78403.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus
salivarius CECT 5713]
Length = 702
Score = 43.1 bits (100), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 30/159 (18%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ ++ K L+ V Q ++++++ + ++ + FL G +GK
Sbjct: 397 SDIERLK--EIGKRLKGKVIGQDEAVNAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 454
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FGS D + +DM + +D + L+GT Y E++
Sbjct: 455 TELAKQLALDMFGSKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 512
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
++L+++I+ ADPQ I ++L DG T+ G I
Sbjct: 513 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 551
>gi|326327981|pdb|3PXI|A Chain A, Structure Of Meca108:clpc
gi|326327983|pdb|3PXI|B Chain B, Structure Of Meca108:clpc
gi|326327985|pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 43.1 bits (100), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVV 571
F+ G +GK LA ++AES+FG + + IDM + + S+ L ++ VV
Sbjct: 524 FIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRRKPYSVV 583
Query: 572 LVEDIDLADPQ----FIKILADGFETENFGKVI 600
L++ I+ A P +++L DG T++ G+ +
Sbjct: 584 LLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTV 616
>gi|306833684|ref|ZP_07466811.1| ATP-dependent Clp protease [Streptococcus bovis ATCC 700338]
gi|304424454|gb|EFM27593.1| ATP-dependent Clp protease [Streptococcus bovis ATCC 700338]
Length = 702
Score = 43.1 bits (100), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D + L+GT Y
Sbjct: 450 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 507
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ ++L+++I+ ADPQ I ++L DG T+ G I
Sbjct: 508 NSNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 557
>gi|21282209|ref|NP_645297.1| endopeptidase [Staphylococcus aureus subsp. aureus MW2]
gi|300912852|ref|ZP_07130294.1| clpc ATPase [Staphylococcus aureus subsp. aureus TCH70]
gi|418987425|ref|ZP_13535098.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1835]
gi|81762804|sp|Q8NXY8.1|CLPC_STAAW RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
gi|21203645|dbj|BAB94345.1| endopeptidase [Staphylococcus aureus subsp. aureus MW2]
gi|300885956|gb|EFK81159.1| clpc ATPase [Staphylococcus aureus subsp. aureus TCH70]
gi|377719213|gb|EHT43383.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
aureus subsp. aureus CIG1835]
Length = 818
Score = 43.1 bits (100), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPLGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|225868474|ref|YP_002744422.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus equi
subsp. zooepidemicus]
gi|225701750|emb|CAW99127.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus equi subsp. zooepidemicus]
Length = 697
Score = 43.1 bits (100), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D + L+GT Y
Sbjct: 446 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSD--RTAVSKLIGTTAGYVGYDD 503
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ ++L+++I+ ADPQ I ++L DG T+ G I
Sbjct: 504 NQNTLTERVRRSPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 553
>gi|385826636|ref|YP_005862978.1| ATP-dependent clp protease ATP-binding subunit clpE [Lactobacillus
johnsonii DPC 6026]
gi|417838314|ref|ZP_12484552.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Lactobacillus
johnsonii pf01]
gi|329668080|gb|AEB94028.1| ATP-dependent clp protease ATP-binding subunit clpE [Lactobacillus
johnsonii DPC 6026]
gi|338761857|gb|EGP13126.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Lactobacillus
johnsonii pf01]
Length = 704
Score = 43.1 bits (100), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 22/109 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FLL G +GK LA +A +FG D L +DM + D ++ + L+G+ Y
Sbjct: 424 FLLTGPTGVGKTELAKQLAIKLFGKADALVRLDMSEYQDQMAVNK--LIGSAPGYVGYGE 481
Query: 567 -----EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ ++L+++I+ A+PQ ++I+ DG T+ G+ I
Sbjct: 482 GGQLTEKIRHQPYSLILLDEIEKANPQVFNALLQIMDDGRLTDAQGRTI 530
>gi|319945659|ref|ZP_08019911.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
australis ATCC 700641]
gi|417919048|ref|ZP_12562589.1| ATPase, AAA family [Streptococcus australis ATCC 700641]
gi|319748258|gb|EFW00500.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
australis ATCC 700641]
gi|342834635|gb|EGU68899.1| ATPase, AAA family [Streptococcus australis ATCC 700641]
Length = 701
Score = 43.1 bits (100), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 29/128 (22%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ D + +DM + +D + L+GT Y
Sbjct: 444 FLFVGPTGVGKTELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 501
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ +VL+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 502 NNNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 561
Query: 605 KGDSSNYE 612
YE
Sbjct: 562 SNAGFGYE 569
>gi|418960486|ref|ZP_13512373.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
salivarius SMXD51]
gi|380344153|gb|EIA32499.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
salivarius SMXD51]
Length = 702
Score = 43.1 bits (100), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 30/159 (18%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ ++ K L+ V Q ++++++ + ++ + FL G +GK
Sbjct: 397 SDIERLK--EIGKRLKGKVIGQDEAVNAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 454
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FGS D + +DM + +D + L+GT Y E++
Sbjct: 455 TELAKQLALDMFGSKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 512
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
++L+++I+ ADPQ I ++L DG T+ G I
Sbjct: 513 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 551
>gi|414564095|ref|YP_006043056.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus equi
subsp. zooepidemicus ATCC 35246]
gi|338847160|gb|AEJ25372.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus equi
subsp. zooepidemicus ATCC 35246]
Length = 697
Score = 43.1 bits (100), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D + L+GT Y
Sbjct: 446 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 503
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ ++L+++I+ ADPQ I ++L DG T+ G I
Sbjct: 504 NQNTLTERVRRSPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 553
>gi|282850669|ref|ZP_06260044.1| putative chaperone protein ClpB [Lactobacillus gasseri 224-1]
gi|282558077|gb|EFB63664.1| putative chaperone protein ClpB [Lactobacillus gasseri 224-1]
Length = 706
Score = 43.1 bits (100), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 22/109 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FLL G +GK LA +A +FG D L +DM + D ++ + L+G+ Y
Sbjct: 425 FLLTGPTGVGKTELAKQLAIKLFGKADALVRLDMSEYQDQMAVNK--LIGSAPGYVGYGE 482
Query: 567 -----EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ ++L+++I+ A+PQ ++I+ DG T+ G+ I
Sbjct: 483 GGQLTEKIRHQPYSLILLDEIEKANPQVFNALLQIMDDGRLTDAQGRTI 531
>gi|195978193|ref|YP_002123437.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|195974898|gb|ACG62424.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 697
Score = 43.1 bits (100), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D + L+GT Y
Sbjct: 446 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSD--RTAVSKLIGTTAGYVGYDD 503
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ ++L+++I+ ADPQ I ++L DG T+ G I
Sbjct: 504 NQNTLTERVRRSPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 553
>gi|42519824|ref|NP_965754.1| ATP-dependent Clp protease ATP-binding subunit clpE [Lactobacillus
johnsonii NCC 533]
gi|41584114|gb|AAS09720.1| ATP-dependent clp protease ATP-binding subunit clpE [Lactobacillus
johnsonii NCC 533]
Length = 704
Score = 43.1 bits (100), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 22/109 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FLL G +GK LA +A +FG D L +DM + D ++ + L+G+ Y
Sbjct: 424 FLLTGPTGVGKTELAKQLAIKLFGKADALVRLDMSEYQDQMAVNK--LIGSAPGYVGYGE 481
Query: 567 -----EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ ++L+++I+ A+PQ ++I+ DG T+ G+ I
Sbjct: 482 GGQLTEKIRHQPYSLILLDEIEKANPQVFNALLQIMDDGRLTDAQGRTI 530
>gi|225870479|ref|YP_002746426.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus equi
subsp. equi 4047]
gi|225699883|emb|CAW93779.1| putative ATP-dependent protease ATP-binding subunit ClpL
[Streptococcus equi subsp. equi 4047]
Length = 699
Score = 43.1 bits (100), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ ++L+++I+ ADPQ I ++L DG T+ G I
Sbjct: 506 NQNTLTERVRRSPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 555
>gi|414563081|ref|YP_006042042.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus equi
subsp. zooepidemicus ATCC 35246]
gi|338846146|gb|AEJ24358.1| ATP-dependent Clp protease ATP-binding subunit [Streptococcus equi
subsp. zooepidemicus ATCC 35246]
Length = 806
Score = 43.1 bits (100), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 59/147 (40%), Gaps = 13/147 (8%)
Query: 4 AGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSS--EAHHFINPNTFWQNHAL 61
AG+S TIK + + + S G FS P S+ E F T L
Sbjct: 148 AGYSKETIK------AIHELRKPKKSKSVGTFSEMMKPQSTAGELSDFTRDLTEMARQGL 201
Query: 62 FSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELK 121
+P ++++ + +V RK + N V+VGD AL + R+ G +P EL+
Sbjct: 202 L---EPVIGREKEVSRMVQVLCRKTKNNPVLVGDAGVGKTALAYGLAQRIANGAIPYELQ 258
Query: 122 QTHVIKFHFAPVTL--RFMKKEEVEMN 146
V++ V RF E MN
Sbjct: 259 DMRVLELDMMSVVAGTRFRGDFEERMN 285
>gi|301067515|ref|YP_003789538.1| Clp protease/DnaK/DnaJ chaperone ATP-binding subunit [Lactobacillus
casei str. Zhang]
gi|417981703|ref|ZP_12622368.1| Clp protease ATP-binding subunit [Lactobacillus casei 12A]
gi|300439922|gb|ADK19688.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus casei str. Zhang]
gi|410521842|gb|EKP96800.1| Clp protease ATP-binding subunit [Lactobacillus casei 12A]
Length = 835
Score = 43.1 bits (100), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAE 531
+L K+L E V Q +++ ++ + +S K F+ G +GK LA ++AE
Sbjct: 512 NLEKILHERVVGQDEAVSAVARAIRRARSGLKDPTRPIGSFMFLGPTGVGKTELAKALAE 571
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D + +DM + + S+ L+G Y EK+ VVL+++
Sbjct: 572 AMFGSEDAMIRVDMSEYMEKFSTSR--LIGAAPGYVGYDEGGQLTEKVRNKPYSVVLLDE 629
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG+ T++ G+ +
Sbjct: 630 VEKAHPDVFNILLQVLDDGYLTDSKGRRV 658
>gi|16802278|ref|NP_463763.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
EGD-e]
gi|47097423|ref|ZP_00234971.1| negative regulator of genetic competence ClpC/MecB [Listeria
monocytogenes str. 1/2a F6854]
gi|254828692|ref|ZP_05233379.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes FSL
N3-165]
gi|254913462|ref|ZP_05263474.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
J2818]
gi|254937957|ref|ZP_05269654.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes
F6900]
gi|284800527|ref|YP_003412392.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
08-5578]
gi|284993713|ref|YP_003415481.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
08-5923]
gi|386042568|ref|YP_005961373.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Listeria
monocytogenes 10403S]
gi|386045869|ref|YP_005964201.1| Clp protease ATP binding subunit [Listeria monocytogenes J0161]
gi|386049161|ref|YP_005967152.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes FSL
R2-561]
gi|386052509|ref|YP_005970067.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes
Finland 1998]
gi|404282664|ref|YP_006683561.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2372]
gi|404409465|ref|YP_006695053.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC5850]
gi|404412333|ref|YP_006697920.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC7179]
gi|405757220|ref|YP_006686496.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2479]
gi|16409597|emb|CAD00759.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
EGD-e]
gi|47014200|gb|EAL05185.1| negative regulator of genetic competence ClpC/MecB [Listeria
monocytogenes str. 1/2a F6854]
gi|258601096|gb|EEW14421.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes FSL
N3-165]
gi|258610567|gb|EEW23175.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes
F6900]
gi|284056089|gb|ADB67030.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
08-5578]
gi|284059180|gb|ADB70119.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
08-5923]
gi|293591469|gb|EFF99803.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
J2818]
gi|345532860|gb|AEO02301.1| Clp protease ATP binding subunit [Listeria monocytogenes J0161]
gi|345535802|gb|AEO05242.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Listeria
monocytogenes 10403S]
gi|346423007|gb|AEO24532.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes FSL
R2-561]
gi|346645160|gb|AEO37785.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes
Finland 1998]
gi|404229291|emb|CBY50695.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC5850]
gi|404232166|emb|CBY53569.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2372]
gi|404235102|emb|CBY56504.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2479]
gi|404238032|emb|CBY59433.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC7179]
gi|441469781|emb|CCQ19536.1| Negative regulator of genetic competence ClpC/MecB [Listeria
monocytogenes]
gi|441472917|emb|CCQ22671.1| Negative regulator of genetic competence ClpC/MecB [Listeria
monocytogenes N53-1]
Length = 820
Score = 43.1 bits (100), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ K+L E V Q ++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 500 NMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 559
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
S+FG D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 560 SMFGDEDSMIRIDMSEYMEKFSTAR--LVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDE 617
Query: 576 IDLADP----QFIKILADGFETENFGKVI 600
I+ A P +++L DG T++ G+V+
Sbjct: 618 IEKAHPDVFNMLLQVLDDGRLTDSKGRVV 646
>gi|90961047|ref|YP_534963.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
salivarius UCC118]
gi|90820241|gb|ABD98880.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus
salivarius UCC118]
Length = 702
Score = 43.1 bits (100), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 30/159 (18%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ ++ K L+ V Q ++++++ + ++ + FL G +GK
Sbjct: 397 SDIERLK--EIGKRLKGKVIGQDEAVNAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 454
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FGS D + +DM + +D + L+GT Y E++
Sbjct: 455 TELAKQLALDMFGSKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 512
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
++L+++I+ ADPQ I ++L DG T+ G I
Sbjct: 513 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 551
>gi|116628305|ref|YP_820924.1| ATP-dependent proteinase ATP-binding subunit [Streptococcus
thermophilus LMD-9]
gi|386087216|ref|YP_006003090.1| Putative Clp-like ATP-dependent protease ATP-binding subunit
[Streptococcus thermophilus ND03]
gi|386345312|ref|YP_006041476.1| ATP-dependent proteinase ATP-binding subunit [Streptococcus
thermophilus JIM 8232]
gi|387910318|ref|YP_006340624.1| ATP-dependent proteinase ATP-binding subunit [Streptococcus
thermophilus MN-ZLW-002]
gi|116101582|gb|ABJ66728.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Streptococcus thermophilus LMD-9]
gi|312278929|gb|ADQ63586.1| Putative Clp-like ATP-dependent protease ATP-binding subunit
[Streptococcus thermophilus ND03]
gi|339278773|emb|CCC20521.1| ATP-dependent proteinase ATP-binding subunit [Streptococcus
thermophilus JIM 8232]
gi|387575253|gb|AFJ83959.1| ATP-dependent proteinase ATP-binding subunit [Streptococcus
thermophilus MN-ZLW-002]
Length = 699
Score = 43.1 bits (100), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ V Q ++ ++ + ++ + FL G +GK
Sbjct: 397 SDIERLK--DMGNRLQAKVIGQDKAVEAVARSIRRNRAGFDEGNRPIGSFLFVGPTGVGK 454
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 455 TELAKQLALDLFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 512
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 513 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 569
>gi|417787362|ref|ZP_12435045.1| putative ATP-dependent Clp proteinase (ATP-binding subunit)
[Lactobacillus salivarius NIAS840]
gi|334307539|gb|EGL98525.1| putative ATP-dependent Clp proteinase (ATP-binding subunit)
[Lactobacillus salivarius NIAS840]
Length = 702
Score = 43.1 bits (100), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 30/159 (18%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ ++ K L+ V Q ++++++ + ++ + FL G +GK
Sbjct: 397 SDIERLK--EIGKRLKGKVIGQDEAVNAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 454
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FGS D + +DM + +D + L+GT Y E++
Sbjct: 455 TELAKQLALDMFGSKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 512
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
++L+++I+ ADPQ I ++L DG T+ G I
Sbjct: 513 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 551
>gi|417990814|ref|ZP_12631278.1| Clp protease ATP-binding subunit [Lactobacillus casei A2-362]
gi|410533564|gb|EKQ08235.1| Clp protease ATP-binding subunit [Lactobacillus casei A2-362]
Length = 835
Score = 43.1 bits (100), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAE 531
+L K+L E V Q +++ ++ + +S K F+ G +GK LA ++AE
Sbjct: 512 NLEKILHERVVGQDEAVSAVARAIRRARSGLKDPTRPIGSFMFLGPTGVGKTELAKALAE 571
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D + +DM + + S+ L+G Y EK+ VVL+++
Sbjct: 572 AMFGSEDAMIRVDMSEYMEKFSTSR--LIGAAPGYVGYDEGGQLTEKVRNKPYSVVLLDE 629
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG+ T++ G+ +
Sbjct: 630 VEKAHPDVFNILLQVLDDGYLTDSKGRRV 658
>gi|229547888|ref|ZP_04436613.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
[Enterococcus faecalis ATCC 29200]
gi|229306909|gb|EEN72905.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
[Enterococcus faecalis ATCC 29200]
Length = 831
Score = 43.1 bits (100), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDTIGKRRLALSIAE 531
+L +L + V Q +++ ++ + +S A+ F+ G +GK LA ++AE
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIRRARSGLKDPARPIGSFMFLGPTGVGKTELAKALAE 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS + L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 571 AMFGSEEALIRVDMSEFMEKYSTSR--LIGSPPGYVGYEEGGQLTEKIRQRPYSVILLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 629 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 657
>gi|225869671|ref|YP_002745618.1| stress response-related Clp ATPase [Streptococcus equi subsp. equi
4047]
gi|225699075|emb|CAW92217.1| putative stress response-related Clp ATPase [Streptococcus equi
subsp. equi 4047]
Length = 813
Score = 43.1 bits (100), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 59/147 (40%), Gaps = 13/147 (8%)
Query: 4 AGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSS--EAHHFINPNTFWQNHAL 61
AG+S TIK + + + S G FS P S+ E F T L
Sbjct: 155 AGYSKETIK------AIHELRKPKKSKSVGTFSEMMKPQSTAGELSDFTRDLTEMARQGL 208
Query: 62 FSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELK 121
+P ++++ + +V RK + N V+VGD AL + R+ G +P EL+
Sbjct: 209 L---EPVIGREKEVSRMVQVLCRKTKNNPVLVGDAGVGKTALAYGLAQRIANGAIPYELQ 265
Query: 122 QTHVIKFHFAPVTL--RFMKKEEVEMN 146
V++ V RF E MN
Sbjct: 266 DMRVLELDMMSVVAGTRFRGDFEERMN 292
>gi|116871616|ref|YP_848397.1| ClpB ATPase [Listeria welshimeri serovar 6b str. SLCC5334]
gi|116740494|emb|CAK19614.1| ClpB ATPase [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 820
Score = 43.1 bits (100), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ K+L E V Q ++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 500 NMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 559
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
S+FG D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 560 SMFGDEDSMIRIDMSEYMEKFSTAR--LVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDE 617
Query: 576 IDLADP----QFIKILADGFETENFGKVI 600
I+ A P +++L DG T++ G+V+
Sbjct: 618 IEKAHPDVFNMLLQVLDDGRLTDSKGRVV 646
>gi|18405278|ref|NP_030558.1| heat shock-related protein [Arabidopsis thaliana]
gi|15450731|gb|AAK96637.1| At2g40130/T7M7.2 [Arabidopsis thaliana]
gi|20334718|gb|AAM16220.1| At2g40130/T7M7.2 [Arabidopsis thaliana]
gi|330254691|gb|AEC09785.1| heat shock-related protein [Arabidopsis thaliana]
Length = 491
Score = 43.1 bits (100), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 40/194 (20%)
Query: 161 GGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVW 220
G G +++ GDL+ N G + + N++V+ + +L+ RVW
Sbjct: 308 GPGLLLHYGDLRVF---------TNGEGNVPAA----NYIVNRISELLRR----HGRRVW 350
Query: 221 LM-ATASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHESRLTF----SQN 275
L+ AT S + Y K R P +E W LQ ++I S L + SS+ S + F S
Sbjct: 351 LIGATTSNEVYEKMMRRFPNVEKDWDLQLLTITSLKPCLPHNKSSLIGSFVPFGGFFSTT 410
Query: 276 PSQVWETKPFA-IKEEEDHKLNCCAECTSNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQ 334
PS++ PF+ K E ++ ++ T + LPPWLQ + ++ NQ
Sbjct: 411 PSEL--KLPFSGFKTEITGPVSSISDQT--------------QSTLPPWLQMTTRTDLNQ 454
Query: 335 KDEL-VEMRRKWNR 347
K ++ WN+
Sbjct: 455 KSSAKCRPKKGWNQ 468
>gi|422808348|ref|ZP_16856759.1| negative regulator of genetic competence ClpC/mecB [Listeria
monocytogenes FSL J1-208]
gi|378753382|gb|EHY63966.1| negative regulator of genetic competence ClpC/mecB [Listeria
monocytogenes FSL J1-208]
Length = 820
Score = 43.1 bits (100), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ K+L E V Q ++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 500 NMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 559
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
S+FG D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 560 SMFGDEDSMIRIDMSEYMEKFSTAR--LVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDE 617
Query: 576 IDLADP----QFIKILADGFETENFGKVI 600
I+ A P +++L DG T++ G+V+
Sbjct: 618 IEKAHPDVFNMLLQVLDDGRLTDSKGRVV 646
>gi|282880308|ref|ZP_06289022.1| ATP-dependent chaperone protein ClpB [Prevotella timonensis CRIS
5C-B1]
gi|281305810|gb|EFA97856.1| ATP-dependent chaperone protein ClpB [Prevotella timonensis CRIS
5C-B1]
Length = 863
Score = 43.1 bits (100), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 3/118 (2%)
Query: 58 NHALFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVP 117
N A P E+I+ V ++ R+ + N +++G+ + A+V R+ RGDVP
Sbjct: 168 NEARAGKLDPVIGRDEEIRRVLQILSRRTKNNPILIGEPGTGKTAIVEGLAARIVRGDVP 227
Query: 118 QELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
+ LK + + K E E LK + +T G I++ ++ V
Sbjct: 228 ENLKNKQLYSLDMGALVAGAKYKGEFE---ERLKSVIKEVTHANGDIILFIDEIHTLV 282
>gi|254853501|ref|ZP_05242849.1| ClpC ATPase [Listeria monocytogenes FSL R2-503]
gi|258606873|gb|EEW19481.1| ClpC ATPase [Listeria monocytogenes FSL R2-503]
Length = 821
Score = 43.1 bits (100), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ K+L E V Q ++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 500 NMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 559
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
S+FG D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 560 SMFGDEDSMIRIDMSEYMEKFSTAR--LVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDE 617
Query: 576 IDLADP----QFIKILADGFETENFGKVI 600
I+ A P +++L DG T++ G+V+
Sbjct: 618 IEKAHPDVFNMLLQVLDDGRLTDSKGRVV 646
>gi|46906465|ref|YP_012854.1| ClpC ATPase [Listeria monocytogenes serotype 4b str. F2365]
gi|47093952|ref|ZP_00231688.1| negative regulator of genetic competence ClpC/MecB [Listeria
monocytogenes str. 4b H7858]
gi|226222861|ref|YP_002756968.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|254825724|ref|ZP_05230725.1| ClpC ATPase [Listeria monocytogenes FSL J1-194]
gi|254932450|ref|ZP_05265809.1| ClpC ATPase [Listeria monocytogenes HPB2262]
gi|300764643|ref|ZP_07074635.1| ClpC ATPase [Listeria monocytogenes FSL N1-017]
gi|386730997|ref|YP_006204493.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
07PF0776]
gi|404279782|ref|YP_006680680.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2755]
gi|404285599|ref|YP_006692185.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes serotype 7 str. SLCC2482]
gi|405748575|ref|YP_006672041.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes ATCC 19117]
gi|405751449|ref|YP_006674914.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2378]
gi|405754317|ref|YP_006677781.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2540]
gi|406703005|ref|YP_006753359.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes L312]
gi|417314282|ref|ZP_12100983.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
J1816]
gi|424713097|ref|YP_007013812.1| Negative regulator of genetic competence ClpC/MecB [Listeria
monocytogenes serotype 4b str. LL195]
gi|424821963|ref|ZP_18246976.1| Chaperone protein ClpB [Listeria monocytogenes str. Scott A]
gi|46879729|gb|AAT03031.1| ClpC ATPase [Listeria monocytogenes serotype 4b str. F2365]
gi|47017673|gb|EAL08470.1| negative regulator of genetic competence ClpC/MecB [Listeria
monocytogenes str. 4b H7858]
gi|225875323|emb|CAS04020.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|293584007|gb|EFF96039.1| ClpC ATPase [Listeria monocytogenes HPB2262]
gi|293594968|gb|EFG02729.1| ClpC ATPase [Listeria monocytogenes FSL J1-194]
gi|300514750|gb|EFK41805.1| ClpC ATPase [Listeria monocytogenes FSL N1-017]
gi|328467843|gb|EGF38883.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
J1816]
gi|332310643|gb|EGJ23738.1| Chaperone protein ClpB [Listeria monocytogenes str. Scott A]
gi|384389755|gb|AFH78825.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes
07PF0776]
gi|404217775|emb|CBY69139.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes ATCC 19117]
gi|404220649|emb|CBY72012.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2378]
gi|404223517|emb|CBY74879.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2540]
gi|404226417|emb|CBY47822.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2755]
gi|404244528|emb|CBY02753.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes serotype 7 str. SLCC2482]
gi|406360035|emb|CBY66308.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes L312]
gi|424012281|emb|CCO62821.1| Negative regulator of genetic competence ClpC/MecB [Listeria
monocytogenes serotype 4b str. LL195]
Length = 820
Score = 43.1 bits (100), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ K+L E V Q ++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 500 NMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 559
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
S+FG D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 560 SMFGDEDSMIRIDMSEYMEKFSTAR--LVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDE 617
Query: 576 IDLADP----QFIKILADGFETENFGKVI 600
I+ A P +++L DG T++ G+V+
Sbjct: 618 IEKAHPDVFNMLLQVLDDGRLTDSKGRVV 646
>gi|16799341|ref|NP_469609.1| endopeptidase Clp ATP-binding chain C [Listeria innocua Clip11262]
gi|423099292|ref|ZP_17086999.1| negative regulator of genetic competence ClpC/MecB [Listeria
innocua ATCC 33091]
gi|16412693|emb|CAC95497.1| endopeptidase Clp ATP-binding chain C [Listeria innocua Clip11262]
gi|370794190|gb|EHN61972.1| negative regulator of genetic competence ClpC/MecB [Listeria
innocua ATCC 33091]
Length = 820
Score = 43.1 bits (100), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ K+L E V Q ++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 500 NMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 559
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
S+FG D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 560 SMFGDEDSMIRIDMSEYMEKFSTAR--LVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDE 617
Query: 576 IDLADP----QFIKILADGFETENFGKVI 600
I+ A P +++L DG T++ G+V+
Sbjct: 618 IEKAHPDVFNMLLQVLDDGRLTDSKGRVV 646
>gi|421766452|ref|ZP_16203226.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Lactococcus
garvieae DCC43]
gi|407625220|gb|EKF51935.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Lactococcus
garvieae DCC43]
Length = 816
Score = 43.1 bits (100), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 23/145 (15%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
+L K L + V Q ++I ++ + +S + F+ G +GK LA ++AE
Sbjct: 510 NLEKELHKRVVGQEEAISAVSRAIRRARSGIADSRRPLGSFMFLGPTGVGKTELAKALAE 569
Query: 532 SVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDID 577
SVFGS + + +DM + + G + E L ++N V+L ++++
Sbjct: 570 SVFGSEESMIRVDMSEYMEKFSTSRLIGAPPGYVGYDEGGQLTEQVRNKPYSVILFDEVE 629
Query: 578 LADPQ----FIKILADGFETENFGK 598
A P ++IL DGF T+ G+
Sbjct: 630 KAHPDIFNIMLQILDDGFVTDTKGR 654
>gi|239630364|ref|ZP_04673395.1| ATP-binding subunit of Clp protease and DnaK+DnaJ chaperones
[Lactobacillus paracasei subsp. paracasei 8700:2]
gi|239527976|gb|EEQ66977.1| ATP-binding subunit of Clp protease and DnaK+DnaJ chaperones
[Lactobacillus paracasei subsp. paracasei 8700:2]
Length = 835
Score = 43.1 bits (100), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAE 531
+L K+L E V Q +++ ++ + +S K F+ G +GK LA ++AE
Sbjct: 512 NLEKILHERVVGQDEAVSAVARAIRRARSGLKDPTRPIGSFMFLGPTGVGKTELAKALAE 571
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D + +DM + + S+ L+G Y EK+ VVL+++
Sbjct: 572 AMFGSEDAMIRVDMSEYMEKFSTSR--LIGAAPGYVGYDEGGQLTEKVRNKPYSVVLLDE 629
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG+ T++ G+ +
Sbjct: 630 VEKAHPDVFNILLQVLDDGYLTDSKGRRV 658
>gi|191639440|ref|YP_001988606.1| ATP-dependent Clp protease ATP-binding protein ClpC [Lactobacillus
casei BL23]
gi|385821202|ref|YP_005857589.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus casei LC2W]
gi|385824395|ref|YP_005860737.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus casei BD-II]
gi|190713742|emb|CAQ67748.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Lactobacillus
casei BL23]
gi|327383529|gb|AEA55005.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus casei LC2W]
gi|327386722|gb|AEA58196.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus casei BD-II]
Length = 835
Score = 43.1 bits (100), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAE 531
+L K+L E V Q +++ ++ + +S K F+ G +GK LA ++AE
Sbjct: 512 NLEKILHERVVGQDEAVSAVARAIRRARSGLKDPTRPIGSFMFLGPTGVGKTELAKALAE 571
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D + +DM + + S+ L+G Y EK+ VVL+++
Sbjct: 572 AMFGSEDAMIRVDMSEYMEKFSTSR--LIGAAPGYVGYDEGGQLTEKVRNKPYSVVLLDE 629
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG+ T++ G+ +
Sbjct: 630 VEKAHPDVFNILLQVLDDGYLTDSKGRRV 658
>gi|430371703|ref|ZP_19429425.1| ATP-dependent Clp protease [Enterococcus faecalis M7]
gi|429515041|gb|ELA04572.1| ATP-dependent Clp protease [Enterococcus faecalis M7]
Length = 372
Score = 43.1 bits (100), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 71/147 (48%), Gaps = 27/147 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDTIGKRRLALSIAE 531
+L +L + V Q +++ ++ + +S A+ F+ G +GK LA ++AE
Sbjct: 52 ELETILHQRVVGQNEAVEAVSRAIRRARSGLKDPARPIGSFMFLGPTGVGKTELAKALAE 111
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS + L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 112 AMFGSEEALIRVDMSEFMEKYSTSR--LIGSPPGYVGYEEGGQLTEKIRQRPYSVILLDE 169
Query: 576 IDLADPQ----FIKILADGFETENFGK 598
++ A P +++L DG T+ G+
Sbjct: 170 VEKAHPDVFNILLQVLDDGHLTDAKGR 196
>gi|410727947|ref|ZP_11366140.1| ATPase with chaperone activity, ATP-binding subunit [Clostridium
sp. Maddingley MBC34-26]
gi|410597507|gb|EKQ52118.1| ATPase with chaperone activity, ATP-binding subunit [Clostridium
sp. Maddingley MBC34-26]
Length = 823
Score = 43.1 bits (100), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 91/208 (43%), Gaps = 39/208 (18%)
Query: 432 GNCTRKPQGVEPRLDSLKSNEGKEVKITLALGNSE----------------LSDSAKLQR 475
N K + ++ +L S+K N + I L + N+E L++S +
Sbjct: 444 ANLRDKERNLKDKLSSMKDNWDTQNSIKLLVVNAEKIASVVSSWTKIPIEKLTESESERL 503
Query: 476 SDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIA 530
+L +L + V Q +++ SI + + K F+ G +GK L+ ++A
Sbjct: 504 LNLENILHKRVVGQNEAVKSIARAVRRARVGIKDPNRPIGSFIFLGPTGVGKTELSKALA 563
Query: 531 ESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDI 576
E++FG + + IDM + + G H E L ++ +VL+++I
Sbjct: 564 EAMFGDENSIIRIDMSEYMESHSVSRLIGSPPGYVGHEEGGQLTEAVRRKPYSIVLLDEI 623
Query: 577 DLADPQ----FIKILADGFETENFGKVI 600
+ A+P+ ++I+ DG T+ GKV+
Sbjct: 624 EKANPEVFNILLQIMEDGRLTDGKGKVV 651
>gi|418003298|ref|ZP_12643388.1| Clp protease, ATP-binding subunit ClpC [Lactobacillus casei UCD174]
gi|410542573|gb|EKQ17013.1| Clp protease, ATP-binding subunit ClpC [Lactobacillus casei UCD174]
Length = 835
Score = 43.1 bits (100), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAE 531
+L K+L E V Q +++ ++ + +S K F+ G +GK LA ++AE
Sbjct: 512 NLEKILHERVVGQDEAVSAVARAIRRARSGLKDPTRPIGSFMFLGPTGVGKTELAKALAE 571
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D + +DM + + S+ L+G Y EK+ VVL+++
Sbjct: 572 AMFGSEDAMIRVDMSEYMEKFSTSR--LIGAAPGYVGYDEGGQLTEKVRNKPYSVVLLDE 629
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG+ T++ G+ +
Sbjct: 630 VEKAHPDVFNILLQVLDDGYLTDSKGRRV 658
>gi|365157357|ref|ZP_09353630.1| chaperone ClpB [Bacillus smithii 7_3_47FAA]
gi|363625258|gb|EHL76300.1| chaperone ClpB [Bacillus smithii 7_3_47FAA]
Length = 811
Score = 43.1 bits (100), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 79/162 (48%), Gaps = 29/162 (17%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDT 519
S+L+ + + +L ++L V Q +++ ++ + + ++ K F+ G
Sbjct: 489 SKLAQTETERLLNLEEILHSRVIGQEEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTG 548
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EK 568
+GK LA ++AE++FG D + IDM ++ + HS L+G+ Y EK
Sbjct: 549 VGKTELARALAEAMFGDEDAMIRIDM---SEYMEKHSTSRLVGSPPGYVGFEEGGQLTEK 605
Query: 569 L------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
+ V+L+++I+ A P +++L DG T++ G+ +
Sbjct: 606 VRRKPYSVILLDEIEKAHPDVFNILLQVLEDGRLTDSKGRTV 647
>gi|255520324|ref|ZP_05387561.1| endopeptidase Clp ATP-binding chain C [Listeria monocytogenes FSL
J1-175]
Length = 819
Score = 43.1 bits (100), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ K+L E V Q ++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 500 NMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 559
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
S+FG D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 560 SMFGDEDSMIRIDMSEYMEKFSTAR--LVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDE 617
Query: 576 IDLADP----QFIKILADGFETENFGKVI 600
I+ A P +++L DG T++ G+V+
Sbjct: 618 IEKAHPDVFNMLLQVLDDGRLTDSKGRVV 646
>gi|172056112|ref|YP_001812572.1| ATPase [Exiguobacterium sibiricum 255-15]
gi|171988633|gb|ACB59555.1| ATPase AAA-2 domain protein [Exiguobacterium sibiricum 255-15]
Length = 815
Score = 43.1 bits (100), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L ++L V Q +++ SI + + ++ K F+ G +GK LA ++AE+
Sbjct: 502 LEEILHGRVIGQNEAVKSISKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARAVAEA 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + IDM ++ + H+ L+G+ Y EK+ V+L+++
Sbjct: 562 MFGDEDAIIRIDM---SEYMEKHATSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVILLDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P+ +++L DG T++ G+ +
Sbjct: 619 IEKAHPEVFNILLQVLDDGRLTDSKGRTV 647
>gi|410455350|ref|ZP_11309232.1| ATPase AAA [Bacillus bataviensis LMG 21833]
gi|409929351|gb|EKN66431.1| ATPase AAA [Bacillus bataviensis LMG 21833]
Length = 717
Score = 43.1 bits (100), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 78/162 (48%), Gaps = 29/162 (17%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDT 519
+L +L+ L + L+ V Q ++ I + + ++ K+ FL G
Sbjct: 405 GKLQQDEQLKMKALEENLKSKVIGQEKAVKKIAKAIRRSRAGLKSKHRPIGSFLFVGPTG 464
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EK 568
+GK L+ ++AE +FG+ D + +DM ++ + HS L+G+ Y EK
Sbjct: 465 VGKTELSKTLAEELFGTKDSMVRLDM---SEYMEKHSVSKLIGSPPGYIGHDEAGQLTEK 521
Query: 569 L------VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
+ ++L+++I+ A P F++IL DG T++ G+++
Sbjct: 522 VRRNPYSIILLDEIEKAHPDVQHMFLQILEDGRLTDSQGRIV 563
>gi|417918620|ref|ZP_12562170.1| ATPase, AAA family [Streptococcus parasanguinis SK236]
gi|342828290|gb|EGU62664.1| ATPase, AAA family [Streptococcus parasanguinis SK236]
Length = 709
Score = 43.1 bits (100), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 29/128 (22%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ D + +DM + +D + L+GT Y
Sbjct: 444 FLFVGPTGVGKTELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 501
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ +VL+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 502 NSNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 561
Query: 605 KGDSSNYE 612
YE
Sbjct: 562 SNAGFGYE 569
>gi|331002049|ref|ZP_08325569.1| hypothetical protein HMPREF0491_00431 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330411845|gb|EGG91250.1| hypothetical protein HMPREF0491_00431 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 829
Score = 43.1 bits (100), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 31/159 (19%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVL----VECKSAKKATW-FLLQGNDTIGK 522
+DS +L ++L KVL E V Q ++++++ + V K K+ FL G +GK
Sbjct: 499 NDSQRL--NNLEKVLHERVVGQEEAVNAVARAIRRGRVGLKDPKRPIGSFLFLGPTGVGK 556
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL-- 569
L+ ++A S+FGS + L +DM ++ + HS ++G+ Y EK+
Sbjct: 557 TELSKALAYSMFGSENALIRVDM---SEYMEKHSVSKMVGSPPGYVGYDEGGQLSEKVRR 613
Query: 570 ----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
V+L ++I+ A P +++L DG T++ G+ +
Sbjct: 614 NPYSVILFDEIEKAHPDVFNILLQVLDDGHITDSSGRTV 652
>gi|384517059|ref|YP_005704364.1| clpC ATPase [Enterococcus faecalis 62]
gi|323479192|gb|ADX78631.1| clpC ATPase [Enterococcus faecalis 62]
Length = 831
Score = 43.1 bits (100), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDTIGKRRLALSIAE 531
+L +L + V Q +++ ++ + +S A+ F+ G +GK LA ++AE
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIRRARSGLKDPARPIGSFMFLGPTGVGKTELAKALAE 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS + L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 571 AMFGSEEALIRVDMSEFMEKYSTSR--LIGSPPGYVGYEEGGQLTEKIRQRPYSVILLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 629 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 657
>gi|319902119|ref|YP_004161847.1| ATPase AAA [Bacteroides helcogenes P 36-108]
gi|319417150|gb|ADV44261.1| ATPase AAA-2 domain protein [Bacteroides helcogenes P 36-108]
Length = 842
Score = 43.1 bits (100), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 67/144 (46%), Gaps = 27/144 (18%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAESVFGS 536
LQ V Q +I +V+ ++ + K F+ G +GK LA +A+ +FGS
Sbjct: 539 LQARVVAQDAAIEKLVKAILRSRVGLKDPNRPIGTFMFLGPTGVGKTHLAKQLAKYMFGS 598
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
+D L IDM + + + ++G Y EK+ +VL+++I+ A
Sbjct: 599 SDALIRIDMSEYMEKYTVSR--MIGAAPGYVGYEEGGQLTEKVRRKPYSIVLLDEIEKAH 656
Query: 581 PQ----FIKILADGFETENFGKVI 600
P +++L +G T+N+G+ +
Sbjct: 657 PDVFNILLQVLDEGRLTDNYGRTV 680
>gi|422408257|ref|ZP_16485218.1| negative regulator of genetic competence ClpC/MecB [Listeria
monocytogenes FSL F2-208]
gi|313611199|gb|EFR86009.1| negative regulator of genetic competence ClpC/MecB [Listeria
monocytogenes FSL F2-208]
Length = 820
Score = 43.1 bits (100), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ K+L E V Q ++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 500 NMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 559
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
S+FG D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 560 SMFGDEDSMIRIDMSEYMEKFSTAR--LVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDE 617
Query: 576 IDLADP----QFIKILADGFETENFGKVI 600
I+ A P +++L DG T++ G+V+
Sbjct: 618 IEKAHPDVFNMLLQVLDDGRLTDSKGRVV 646
>gi|311111641|ref|ZP_07713038.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Lactobacillus
gasseri MV-22]
gi|311066795|gb|EFQ47135.1| ATP-dependent Clp protease, ATP-binding subunit ClpE [Lactobacillus
gasseri MV-22]
Length = 417
Score = 43.1 bits (100), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 22/109 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FLL G +GK LA +A +FG D L +DM + D ++ + L+G+ Y
Sbjct: 137 FLLTGPTGVGKTELAKQLAIKLFGKADALVRLDMSEYQDQMAVNK--LIGSAPGYVGYGE 194
Query: 567 -----EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ ++L+++I+ A+PQ ++I+ DG T+ G+ I
Sbjct: 195 GGQLTEKIRHQPYSLILLDEIEKANPQVFNALLQIMDDGRLTDAQGRTI 243
>gi|340750630|ref|ZP_08687468.1| chaperone ClpB [Fusobacterium mortiferum ATCC 9817]
gi|229420258|gb|EEO35305.1| chaperone ClpB [Fusobacterium mortiferum ATCC 9817]
Length = 859
Score = 43.1 bits (100), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 76/161 (47%), Gaps = 27/161 (16%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKAT-----WFLLQGNDT 519
S+L+++ K + +L L+E V Q +++ ++ + ++ ++ K T F+ G
Sbjct: 549 SKLAETEKEKILNLENSLKERVKGQDEAVKAVADTMIRSRAGLKDTNRPMGSFIFLGPTG 608
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKL---------- 569
+GK LA S+A ++F S D + IDM + D S+ L+G Y
Sbjct: 609 VGKTYLAKSLAYNLFDSEDSVIRIDMSEYMDKFSTTR--LIGAPPGYVGYEEGGQLTEAV 666
Query: 570 ------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
V+L ++I+ A P +++L DG T+ G+V+
Sbjct: 667 RTKPYSVILFDEIEKAHPDVFNILLQVLDDGRLTDGQGRVV 707
>gi|217965681|ref|YP_002351359.1| negative regulator of genetic competence ClpC/mecB [Listeria
monocytogenes HCC23]
gi|290892627|ref|ZP_06555620.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes FSL
J2-071]
gi|386006961|ref|YP_005925239.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes L99]
gi|386025542|ref|YP_005946318.1| Clp endopeptidase ATP-binding subunit [Listeria monocytogenes M7]
gi|404406685|ref|YP_006689400.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2376]
gi|217334951|gb|ACK40745.1| negative regulator of genetic competence ClpC/mecB [Listeria
monocytogenes HCC23]
gi|290557936|gb|EFD91457.1| endopeptidase subunit Clp ATP-binding C [Listeria monocytogenes FSL
J2-071]
gi|307569771|emb|CAR82950.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes L99]
gi|336022123|gb|AEH91260.1| Clp endopeptidase ATP-binding subunit; putative ClpB [Listeria
monocytogenes M7]
gi|404240834|emb|CBY62234.1| ATP-dependent Clp protease ATP-binding subunit [Listeria
monocytogenes SLCC2376]
Length = 820
Score = 43.1 bits (100), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ K+L E V Q ++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 500 NMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 559
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
S+FG D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 560 SMFGDEDSMIRIDMSEYMEKFSTAR--LVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDE 617
Query: 576 IDLADP----QFIKILADGFETENFGKVI 600
I+ A P +++L DG T++ G+V+
Sbjct: 618 IEKAHPDVFNMLLQVLDDGRLTDSKGRVV 646
>gi|418006332|ref|ZP_12646291.1| Clp protease, ATP-binding subunit ClpC [Lactobacillus casei UW1]
gi|410544256|gb|EKQ18592.1| Clp protease, ATP-binding subunit ClpC [Lactobacillus casei UW1]
Length = 835
Score = 43.1 bits (100), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAE 531
+L K+L E V Q +++ ++ + +S K F+ G +GK LA ++AE
Sbjct: 512 NLEKILHERVVGQDEAVSAVARAIRRARSGLKDPTRPIGSFMFLGPTGVGKTELAKALAE 571
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D + +DM + + S+ L+G Y EK+ VVL+++
Sbjct: 572 AMFGSEDAMIRVDMSEYMEKFSTSR--LIGAAPGYVGYDEGGQLTEKVRNKPYSVVLLDE 629
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG+ T++ G+ +
Sbjct: 630 VEKAHPDVFNILLQVLDDGYLTDSKGRRV 658
>gi|417995435|ref|ZP_12635728.1| Clp protease ATP-binding subunit [Lactobacillus casei M36]
gi|418014997|ref|ZP_12654581.1| Clp protease, ATP-binding subunit ClpC [Lactobacillus casei Lpc-37]
gi|410537572|gb|EKQ12145.1| Clp protease ATP-binding subunit [Lactobacillus casei M36]
gi|410552519|gb|EKQ26543.1| Clp protease, ATP-binding subunit ClpC [Lactobacillus casei Lpc-37]
Length = 835
Score = 43.1 bits (100), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAE 531
+L K+L E V Q +++ ++ + +S K F+ G +GK LA ++AE
Sbjct: 512 NLEKILHERVVGQDEAVSAVARAIRRARSGLKDPTRPIGSFMFLGPTGVGKTELAKALAE 571
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D + +DM + + S+ L+G Y EK+ VVL+++
Sbjct: 572 AMFGSEDAMIRVDMSEYMEKFSTSR--LIGAAPGYVGYDEGGQLTEKVRNKPYSVVLLDE 629
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG+ T++ G+ +
Sbjct: 630 VEKAHPDVFNILLQVLDDGYLTDSKGRRV 658
>gi|255970546|ref|ZP_05421132.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis T1]
gi|256617980|ref|ZP_05474826.1| UvrB/UvrC protein [Enterococcus faecalis ATCC 4200]
gi|256958535|ref|ZP_05562706.1| UvrB/UvrC protein [Enterococcus faecalis DS5]
gi|257078149|ref|ZP_05572510.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis JH1]
gi|257091493|ref|ZP_05585854.1| ATP-dependent Clp protease ATP-binding subunit [Enterococcus
faecalis CH188]
gi|257420295|ref|ZP_05597285.1| ATP-dependent Clp protease [Enterococcus faecalis X98]
gi|294780724|ref|ZP_06746084.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis PC1.1]
gi|307270010|ref|ZP_07551335.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX4248]
gi|307274514|ref|ZP_07555695.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX2134]
gi|312899758|ref|ZP_07759078.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0470]
gi|312905574|ref|ZP_07764688.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0635]
gi|312953740|ref|ZP_07772573.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0102]
gi|384514494|ref|YP_005709587.1| ATPase/chaperone ClpC [Enterococcus faecalis OG1RF]
gi|397701405|ref|YP_006539193.1| clpC ATPase [Enterococcus faecalis D32]
gi|421513228|ref|ZP_15960008.1| ATP-dependent Clp protease [Enterococcus faecalis ATCC 29212]
gi|422690562|ref|ZP_16748612.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0630]
gi|422692538|ref|ZP_16750555.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0031]
gi|422694175|ref|ZP_16752177.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX4244]
gi|422698655|ref|ZP_16756547.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX1346]
gi|422700278|ref|ZP_16758127.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX1342]
gi|422708175|ref|ZP_16765709.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0043]
gi|422710749|ref|ZP_16767703.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0027]
gi|422726124|ref|ZP_16782578.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0312]
gi|422731699|ref|ZP_16788055.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0645]
gi|430356044|ref|ZP_19424742.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
[Enterococcus faecalis OG1X]
gi|255961564|gb|EET94040.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis T1]
gi|256597507|gb|EEU16683.1| UvrB/UvrC protein [Enterococcus faecalis ATCC 4200]
gi|256949031|gb|EEU65663.1| UvrB/UvrC protein [Enterococcus faecalis DS5]
gi|256986179|gb|EEU73481.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis JH1]
gi|257000305|gb|EEU86825.1| ATP-dependent Clp protease ATP-binding subunit [Enterococcus
faecalis CH188]
gi|257162119|gb|EEU92079.1| ATP-dependent Clp protease [Enterococcus faecalis X98]
gi|294452164|gb|EFG20606.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis PC1.1]
gi|306508786|gb|EFM77875.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX2134]
gi|306513675|gb|EFM82282.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX4248]
gi|310628344|gb|EFQ11627.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0102]
gi|310631303|gb|EFQ14586.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0635]
gi|311293110|gb|EFQ71666.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0470]
gi|315035218|gb|EFT47150.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0027]
gi|315148386|gb|EFT92402.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX4244]
gi|315152751|gb|EFT96767.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0031]
gi|315154576|gb|EFT98592.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0043]
gi|315158946|gb|EFU02963.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0312]
gi|315162279|gb|EFU06296.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0645]
gi|315171228|gb|EFU15245.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX1342]
gi|315172856|gb|EFU16873.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX1346]
gi|315576520|gb|EFU88711.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0630]
gi|327536383|gb|AEA95217.1| ATPase/chaperone ClpC, probable specificity factor for ClpP
protease [Enterococcus faecalis OG1RF]
gi|397338044|gb|AFO45716.1| clpC ATPase [Enterococcus faecalis D32]
gi|401673667|gb|EJS80045.1| ATP-dependent Clp protease [Enterococcus faecalis ATCC 29212]
gi|429514421|gb|ELA03970.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
[Enterococcus faecalis OG1X]
Length = 831
Score = 43.1 bits (100), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDTIGKRRLALSIAE 531
+L +L + V Q +++ ++ + +S A+ F+ G +GK LA ++AE
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIRRARSGLKDPARPIGSFMFLGPTGVGKTELAKALAE 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS + L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 571 AMFGSEEALIRVDMSEFMEKYSTSR--LIGSPPGYVGYEEGGQLTEKIRQRPYSVILLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 629 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 657
>gi|300861491|ref|ZP_07107575.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Enterococcus
faecalis TUSoD Ef11]
gi|422741397|ref|ZP_16795423.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX2141]
gi|428768366|ref|YP_007154477.1| Clp protease [Enterococcus faecalis str. Symbioflor 1]
gi|295114559|emb|CBL33196.1| ATPases with chaperone activity, ATP-binding subunit [Enterococcus
sp. 7L76]
gi|300848952|gb|EFK76705.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Enterococcus
faecalis TUSoD Ef11]
gi|315143909|gb|EFT87925.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX2141]
gi|427186539|emb|CCO73763.1| Clp protease [Enterococcus faecalis str. Symbioflor 1]
Length = 831
Score = 43.1 bits (100), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDTIGKRRLALSIAE 531
+L +L + V Q +++ ++ + +S A+ F+ G +GK LA ++AE
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIRRARSGLKDPARPIGSFMFLGPTGVGKTELAKALAE 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS + L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 571 AMFGSEEALIRVDMSEFMEKYSTSR--LIGSPPGYVGYEEGGQLTEKIRQRPYSVILLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 629 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 657
>gi|414156783|ref|ZP_11413084.1| hypothetical protein HMPREF9186_01504 [Streptococcus sp. F0442]
gi|410869776|gb|EKS17736.1| hypothetical protein HMPREF9186_01504 [Streptococcus sp. F0442]
Length = 706
Score = 43.1 bits (100), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 29/128 (22%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ D + +DM + +D + L+GT Y
Sbjct: 444 FLFVGPTGVGKTELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 501
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ +VL+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 502 NNNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 561
Query: 605 KGDSSNYE 612
YE
Sbjct: 562 SNAGFGYE 569
>gi|418011898|ref|ZP_12651647.1| Clp protease, ATP-binding subunit ClpC [Lactobacillus casei Lc-10]
gi|410551514|gb|EKQ25572.1| Clp protease, ATP-binding subunit ClpC [Lactobacillus casei Lc-10]
Length = 835
Score = 43.1 bits (100), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAE 531
+L K+L E V Q +++ ++ + +S K F+ G +GK LA ++AE
Sbjct: 512 NLEKILHERVVGQDEAVSAVARAIRRARSGLKDPTRPIGSFMFLGPTGVGKTELAKALAE 571
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D + +DM + + S+ L+G Y EK+ VVL+++
Sbjct: 572 AMFGSEDAMIRVDMSEYMEKFSTSR--LIGAAPGYVGYDEGGQLTEKVRNKPYSVVLLDE 629
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG+ T++ G+ +
Sbjct: 630 VEKAHPDVFNILLQVLDDGYLTDSKGRRV 658
>gi|407981108|ref|ZP_11161862.1| endopeptidase ClpE [Bacillus sp. HYC-10]
gi|407412045|gb|EKF33901.1| endopeptidase ClpE [Bacillus sp. HYC-10]
Length = 700
Score = 43.1 bits (100), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 25/169 (14%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW--- 511
E K + +G + + K++ D+ L+ V Q ++ + + + ++ K+
Sbjct: 382 EQKTGIPVGKLQADEQTKMKEIDVR--LKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPT 439
Query: 512 --FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE 557
FL G +GK L+ ++AE +FGS D + +DM + + G H E
Sbjct: 440 GSFLFVGPTGVGKTELSKTLAEELFGSKDAIIRLDMSEYMEKHSVSKIIGSPPGYVGHDE 499
Query: 558 MLMGTLKNYEKL--VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
T K K ++L+++I+ A P F++I+ DG T++ G+ +
Sbjct: 500 AGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTV 548
>gi|422719707|ref|ZP_16776335.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0017]
gi|315032999|gb|EFT44931.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0017]
Length = 831
Score = 43.1 bits (100), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDTIGKRRLALSIAE 531
+L +L + V Q +++ ++ + +S A+ F+ G +GK LA ++AE
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIRRARSGLKDPARPIGSFMFLGPTGVGKTELAKALAE 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS + L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 571 AMFGSEEALIRVDMSEFMEKYSTSR--LIGSPPGYVGYEEGGQLTEKIRQRPYSVILLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 629 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 657
>gi|257080312|ref|ZP_05574673.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
faecalis E1Sol]
gi|256988342|gb|EEU75644.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
faecalis E1Sol]
Length = 831
Score = 43.1 bits (100), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDTIGKRRLALSIAE 531
+L +L + V Q +++ ++ + +S A+ F+ G +GK LA ++AE
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIRRARSGLKDPARPIGSFMFLGPTGVGKTELAKALAE 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS + L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 571 AMFGSEEALIRVDMSEFMEKYSTSR--LIGSPPGYVGYEEGGQLTEKIRQRPYSVILLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 629 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 657
>gi|255974129|ref|ZP_05424715.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
faecalis T2]
gi|307283899|ref|ZP_07564072.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0860]
gi|422736196|ref|ZP_16792461.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX1341]
gi|255967001|gb|EET97623.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
faecalis T2]
gi|306503549|gb|EFM72796.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0860]
gi|315167028|gb|EFU11045.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX1341]
Length = 831
Score = 43.1 bits (100), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDTIGKRRLALSIAE 531
+L +L + V Q +++ ++ + +S A+ F+ G +GK LA ++AE
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIRRARSGLKDPARPIGSFMFLGPTGVGKTELAKALAE 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS + L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 571 AMFGSEEALIRVDMSEFMEKYSTSR--LIGSPPGYVGYEEGGQLTEKIRQRPYSVILLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 629 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 657
>gi|407475965|ref|YP_006789842.1| class III stress response-related ATPase [Exiguobacterium
antarcticum B7]
gi|407060044|gb|AFS69234.1| class III stress response-related ATPase [Exiguobacterium
antarcticum B7]
Length = 815
Score = 43.1 bits (100), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L ++L V Q +++ SI + + ++ K F+ G +GK LA ++AE+
Sbjct: 502 LEEILHGRVIGQNEAVKSISKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARAVAEA 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + IDM ++ + H+ L+G+ Y EK+ V+L+++
Sbjct: 562 MFGDEDAIIRIDM---SEYMEKHATSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVILLDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P+ +++L DG T++ G+ +
Sbjct: 619 IEKAHPEVFNILLQVLDDGRLTDSKGRTV 647
>gi|424668788|ref|ZP_18105813.1| hypothetical protein A1OC_02385 [Stenotrophomonas maltophilia
Ab55555]
gi|401072124|gb|EJP80633.1| hypothetical protein A1OC_02385 [Stenotrophomonas maltophilia
Ab55555]
Length = 949
Score = 43.1 bits (100), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 27/161 (16%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDT 519
SEL+ + + L + L E V Q +++ ++ + + ++ +K FL G
Sbjct: 594 SELTVEEREKLLHLEQRLHERVVGQDEAVRAVADAVRLARAGLREGSKPVATFLFLGPTG 653
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL 569
+GK LA ++AES++G L IDM + G L+G Y EK+
Sbjct: 654 VGKTELAKALAESIYGDEGALLRIDMSEY--GERHTVARLVGAPPGYVGYDEGGQLTEKV 711
Query: 570 ------VVLVEDIDLADPQFIKILA----DGFETENFGKVI 600
V+L+++I+ A P IL DG T+ G+V+
Sbjct: 712 RRKPYSVLLLDEIEKAHPDVYNILLQVFDDGRLTDGKGRVV 752
>gi|329963591|ref|ZP_08301070.1| ATPase family protein [Bacteroides fluxus YIT 12057]
gi|328528580|gb|EGF55551.1| ATPase family protein [Bacteroides fluxus YIT 12057]
Length = 841
Score = 43.1 bits (100), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 27/144 (18%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAESVFGS 536
LQ V Q +I +V+ ++ + K F+ G +GK LA +A +FGS
Sbjct: 537 LQAKVIAQDPAIEKLVKAILRSRVGLKDPNRPIGTFMFLGPTGVGKTHLAKQLANYMFGS 596
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
+D L IDM + + + ++G Y EK+ +VL+++I+ A
Sbjct: 597 SDALIRIDMSEYMEKYTVSR--MIGAAPGYVGYEEGGQLTEKVRRKPYSIVLLDEIEKAH 654
Query: 581 PQ----FIKILADGFETENFGKVI 600
P +++L +G T+N+G+ I
Sbjct: 655 PDVFNILLQVLDEGRLTDNYGRTI 678
>gi|301300299|ref|ZP_07206507.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC
[Lactobacillus salivarius ACS-116-V-Col5a]
gi|300852102|gb|EFK79778.1| putative ATP-dependent Clp protease ATP-binding subunit ClpC
[Lactobacillus salivarius ACS-116-V-Col5a]
Length = 702
Score = 43.1 bits (100), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 30/159 (18%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ ++ K L+ V Q ++++++ + ++ + FL G +GK
Sbjct: 397 SDIERLK--EIGKRLKGKVIGQDEAVNAVARAIRRNRAGFDEENRPIGSFLFVGPTGVGK 454
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FGS D + +DM + +D + L+GT Y E++
Sbjct: 455 TELAKQLALDMFGSKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 512
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
++L+++I+ ADPQ I ++L DG T+ G I
Sbjct: 513 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 551
>gi|116495961|ref|YP_807695.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus casei ATCC 334]
gi|417994137|ref|ZP_12634472.1| Clp protease ATP-binding subunit [Lactobacillus casei CRF28]
gi|418000163|ref|ZP_12640360.1| Clp protease, ATP-binding subunit ClpC [Lactobacillus casei T71499]
gi|418009031|ref|ZP_12648874.1| Clp protease ATP-binding subunit [Lactobacillus casei UW4]
gi|116106111|gb|ABJ71253.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus casei ATCC 334]
gi|410530793|gb|EKQ05561.1| Clp protease ATP-binding subunit [Lactobacillus casei CRF28]
gi|410537332|gb|EKQ11908.1| Clp protease, ATP-binding subunit ClpC [Lactobacillus casei T71499]
gi|410544862|gb|EKQ19175.1| Clp protease ATP-binding subunit [Lactobacillus casei UW4]
Length = 835
Score = 43.1 bits (100), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAE 531
+L K+L E V Q +++ ++ + +S K F+ G +GK LA ++AE
Sbjct: 512 NLEKILHERVVGQDEAVSAVARAIRRARSGLKDPTRPIGSFMFLGPTGVGKTELAKALAE 571
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D + +DM + + S+ L+G Y EK+ VVL+++
Sbjct: 572 AMFGSEDAMIRVDMSEYMEKFSTSR--LIGAAPGYVGYDEGGQLTEKVRNKPYSVVLLDE 629
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG+ T++ G+ +
Sbjct: 630 VEKAHPDVFNILLQVLDDGYLTDSKGRRV 658
>gi|29377725|ref|NP_816879.1| ATP-dependent Clp protease, ATP-binding protein ClpC [Enterococcus
faecalis V583]
gi|227517135|ref|ZP_03947184.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
[Enterococcus faecalis TX0104]
gi|227555222|ref|ZP_03985269.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
[Enterococcus faecalis HH22]
gi|257088425|ref|ZP_05582786.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis D6]
gi|257418098|ref|ZP_05595092.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis T11]
gi|422714244|ref|ZP_16770976.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0309A]
gi|422716305|ref|ZP_16773016.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0309B]
gi|422721899|ref|ZP_16778478.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX2137]
gi|424672474|ref|ZP_18109436.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis 599]
gi|424677514|ref|ZP_18114366.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV103]
gi|424680868|ref|ZP_18117664.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV116]
gi|424682811|ref|ZP_18119573.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV129]
gi|424688566|ref|ZP_18125171.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV25]
gi|424690735|ref|ZP_18127267.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV31]
gi|424694470|ref|ZP_18130873.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV37]
gi|424697804|ref|ZP_18134116.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV41]
gi|424701101|ref|ZP_18137278.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV62]
gi|424704695|ref|ZP_18140790.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV63]
gi|424711826|ref|ZP_18144038.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV65]
gi|424717779|ref|ZP_18147055.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV68]
gi|424721762|ref|ZP_18150839.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV72]
gi|424724563|ref|ZP_18153501.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV73]
gi|424727723|ref|ZP_18156352.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV81]
gi|424744327|ref|ZP_18172621.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV85]
gi|424753742|ref|ZP_18181671.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV93]
gi|29345193|gb|AAO82949.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Enterococcus
faecalis V583]
gi|227075415|gb|EEI13378.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
[Enterococcus faecalis TX0104]
gi|227175651|gb|EEI56623.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
[Enterococcus faecalis HH22]
gi|256996455|gb|EEU83757.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis D6]
gi|257159926|gb|EEU89886.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis T11]
gi|315028021|gb|EFT39953.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX2137]
gi|315575413|gb|EFU87604.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0309B]
gi|315580852|gb|EFU93043.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0309A]
gi|402352709|gb|EJU87549.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV116]
gi|402354333|gb|EJU89144.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV103]
gi|402355646|gb|EJU90411.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis 599]
gi|402360230|gb|EJU94834.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV25]
gi|402363478|gb|EJU97957.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV31]
gi|402366381|gb|EJV00762.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV129]
gi|402370657|gb|EJV04854.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV37]
gi|402372546|gb|EJV06661.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV62]
gi|402374375|gb|EJV08400.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV41]
gi|402381195|gb|EJV14906.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV63]
gi|402382846|gb|EJV16484.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV65]
gi|402383726|gb|EJV17311.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV68]
gi|402390441|gb|EJV23784.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV72]
gi|402394441|gb|EJV27613.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV73]
gi|402395898|gb|EJV28978.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV81]
gi|402399294|gb|EJV32178.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV85]
gi|402403745|gb|EJV36401.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis ERV93]
Length = 831
Score = 43.1 bits (100), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDTIGKRRLALSIAE 531
+L +L + V Q +++ ++ + +S A+ F+ G +GK LA ++AE
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIRRARSGLKDPARPIGSFMFLGPTGVGKTELAKALAE 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS + L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 571 AMFGSEEALIRVDMSEFMEKYSTSR--LIGSPPGYVGYEEGGQLTEKIRQRPYSVILLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 629 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 657
>gi|342163133|ref|YP_004767772.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
pseudopneumoniae IS7493]
gi|341933015|gb|AEL09912.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
pseudopneumoniae IS7493]
Length = 701
Score = 43.1 bits (100), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 29/128 (22%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ D + +DM + +D + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ +VL+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 506 NNNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 565
Query: 605 KGDSSNYE 612
YE
Sbjct: 566 SNAGFGYE 573
>gi|422867278|ref|ZP_16913875.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX1467]
gi|329577560|gb|EGG58995.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX1467]
Length = 700
Score = 43.1 bits (100), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDTIGKRRLALSIAE 531
+L +L + V Q +++ ++ + +S A+ F+ G +GK LA ++AE
Sbjct: 380 ELETILHQRVVGQNEAVEAVSRAIRRARSGLKDPARPIGSFMFLGPTGVGKTELAKALAE 439
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS + L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 440 AMFGSEEALIRVDMSEFMEKYSTSR--LIGSPPGYVGYEEGGQLTEKIRQRPYSVILLDE 497
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 498 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 526
>gi|256963095|ref|ZP_05567266.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis HIP11704]
gi|307272616|ref|ZP_07553867.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0855]
gi|256953591|gb|EEU70223.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis HIP11704]
gi|306510718|gb|EFM79737.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0855]
Length = 831
Score = 43.1 bits (100), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDTIGKRRLALSIAE 531
+L +L + V Q +++ ++ + +S A+ F+ G +GK LA ++AE
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIRRARSGLKDPARPIGSFMFLGPTGVGKTELAKALAE 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS + L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 571 AMFGSEEALIRVDMSEFMEKYSTSR--LIGSPPGYVGYEEGGQLTEKIRQRPYSVILLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 629 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 657
>gi|395238743|ref|ZP_10416652.1| ATPase [Lactobacillus gigeriorum CRBIP 24.85]
gi|394477264|emb|CCI86629.1| ATPase [Lactobacillus gigeriorum CRBIP 24.85]
Length = 827
Score = 43.1 bits (100), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%), Gaps = 22/109 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA ++A ++FGS D + IDM + D +++ L+G+ Y
Sbjct: 556 FLFLGPTGVGKTELAKAVAAAIFGSEDNMIRIDMSEYMDSIANSK--LIGSAPGYVGYEE 613
Query: 567 -----EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
E++ VVL+++++ A P +++L +GF T++ G+ +
Sbjct: 614 GGQLSEQVRRHPYSVVLLDEVEKAHPDVFNLLLQVLDEGFLTDSKGRKV 662
>gi|386316824|ref|YP_006012988.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
gi|323127111|gb|ADX24408.1| ATP-dependent protease ATP-binding subunit ClpL [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
Length = 699
Score = 43.1 bits (100), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 67/145 (46%), Gaps = 28/145 (19%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
L+E+V Q ++ ++ + ++ + FL G +GK LA +A +FGS
Sbjct: 413 LKEHVIGQDGAVEAVARAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDLFGS 472
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVEDIDLA 579
+ + +DM + +D + L+GT Y E++ +VL+++I+ A
Sbjct: 473 KEAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNNNTLTERVRRNPYAIVLLDEIEKA 530
Query: 580 DPQFI----KILADGFETENFGKVI 600
DPQ I ++L DG T+ G I
Sbjct: 531 DPQVITLLLQVLDDGRLTDGQGNTI 555
>gi|408790713|ref|ZP_11202327.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Lactobacillus
florum 2F]
gi|408519986|gb|EKK20092.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Lactobacillus
florum 2F]
Length = 672
Score = 43.1 bits (100), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 27/159 (16%)
Query: 467 LSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVEC-----KSAKKATWFLLQGNDTIG 521
L + K Q +L L+++V Q +++ + + + KS + FL G +G
Sbjct: 366 LEEQEKQQLKELAPQLEQHVIGQPEAVQQVTKAIQRNRLGFNKSGRPIGSFLFVGPTGVG 425
Query: 522 KRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL-- 569
K LA +A +FGS D L DM + + S L+G Y EK+
Sbjct: 426 KTELAKQLANQLFGSKDALIRFDMSEYREPQSVAK--LIGAAPGYVGYDEAGQLTEKVRR 483
Query: 570 ----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++L+++++ A P F+++L DG T++ G+ +
Sbjct: 484 HPYSLILLDEVEKAHPDVLHTFLQVLDDGRLTDSQGRTV 522
>gi|257083072|ref|ZP_05577433.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
faecalis Fly1]
gi|256991102|gb|EEU78404.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
faecalis Fly1]
Length = 831
Score = 43.1 bits (100), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDTIGKRRLALSIAE 531
+L +L + V Q +++ ++ + +S A+ F+ G +GK LA ++AE
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIRRARSGLKDPARPIGSFMFLGPTGVGKTELAKALAE 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS + L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 571 AMFGSEEALIRVDMSEFMEKYSTSR--LIGSPPGYVGYEEGGQLTEKIRQRPYSVILLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 629 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 657
>gi|256960597|ref|ZP_05564768.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis Merz96]
gi|293384400|ref|ZP_06630281.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis R712]
gi|293389786|ref|ZP_06634227.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis S613]
gi|312906551|ref|ZP_07765552.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis DAPTO 512]
gi|312910758|ref|ZP_07769596.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis DAPTO 516]
gi|256951093|gb|EEU67725.1| UvrB/UvrC protein:AAA ATPase [Enterococcus faecalis Merz96]
gi|291078248|gb|EFE15612.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis R712]
gi|291080912|gb|EFE17875.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis S613]
gi|310627420|gb|EFQ10703.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis DAPTO 512]
gi|311288957|gb|EFQ67513.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis DAPTO 516]
Length = 831
Score = 43.1 bits (100), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDTIGKRRLALSIAE 531
+L +L + V Q +++ ++ + +S A+ F+ G +GK LA ++AE
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIRRARSGLKDPARPIGSFMFLGPTGVGKTELAKALAE 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS + L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 571 AMFGSEEALIRVDMSEFMEKYSTSR--LIGSPPGYVGYEEGGQLTEKIRQRPYSVILLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 629 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 657
>gi|375089120|ref|ZP_09735456.1| hypothetical protein HMPREF9703_01538 [Dolosigranulum pigrum ATCC
51524]
gi|374560921|gb|EHR32274.1| hypothetical protein HMPREF9703_01538 [Dolosigranulum pigrum ATCC
51524]
Length = 831
Score = 43.1 bits (100), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 68/147 (46%), Gaps = 23/147 (15%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L +L E V Q +++ ++ + + +S K FL G +GK LA ++AE
Sbjct: 513 NLETLLHERVIGQDEAVKAVAKAIRRARSGLKDPNRPIGSFLFLGPTGVGKTELAKTLAE 572
Query: 532 SVFGSTDLLFHID----MRKRND--------GVSSHSE--MLMGTLKNYEKLVVLVEDID 577
++F S D L +D M K N G H E L ++ VVL+++++
Sbjct: 573 AMFSSEDHLIRVDMSEFMEKHNTSRLIGSPPGYVGHDEGGQLTEKIRQNPYSVVLLDEVE 632
Query: 578 LADPQ----FIKILADGFETENFGKVI 600
A P +++L DG T+ G+++
Sbjct: 633 KAHPDVFNLLLQVLDDGQITDGKGRLV 659
>gi|289433587|ref|YP_003463459.1| ClpC ATPase [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289169831|emb|CBH26369.1| ClpC ATPase [Listeria seeligeri serovar 1/2b str. SLCC3954]
Length = 820
Score = 43.1 bits (100), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ K+L E V Q ++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 500 NMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 559
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
S+FG D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 560 SMFGDEDSMIRIDMSEYMEKFSTAR--LVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDE 617
Query: 576 IDLADP----QFIKILADGFETENFGKVI 600
I+ A P +++L DG T++ G+V+
Sbjct: 618 IEKAHPDVFNMLLQVLDDGRLTDSKGRVV 646
>gi|424760005|ref|ZP_18187660.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis R508]
gi|402404076|gb|EJV36710.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis R508]
Length = 831
Score = 43.1 bits (100), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDTIGKRRLALSIAE 531
+L +L + V Q +++ ++ + +S A+ F+ G +GK LA ++AE
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIRRARSGLKDPARPIGSFMFLGPTGVGKTELAKALAE 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS + L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 571 AMFGSEEALIRVDMSEFMEKYSTSR--LIGSPPGYVGYEEGGQLTEKIRQRPYSVILLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 629 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 657
>gi|297203464|ref|ZP_06920861.1| ATP-dependent chaperone ClpB [Streptomyces sviceus ATCC 29083]
gi|297148417|gb|EDY60364.2| ATP-dependent chaperone ClpB [Streptomyces sviceus ATCC 29083]
Length = 847
Score = 43.1 bits (100), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 75/159 (47%), Gaps = 23/159 (14%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDT 519
S L++ K + L + L E V Q +++ + + ++ ++ + FL G
Sbjct: 525 SSLTEEEKDRLLGLERHLHERVVGQDEAVRVVSDAVLRSRAGLASPDRPIGSFLFLGPTG 584
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKN 565
+GK LA ++AES+FGS + + +DM + + G H E L ++
Sbjct: 585 VGKTELARALAESLFGSEERMVRLDMSEYQERHTVSRLVGAPPGYVGHEEAGQLTEVVRR 644
Query: 566 YEKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
+ ++L+++++ A P +++L DG T++ G+ +
Sbjct: 645 HPYSLLLLDEVEKAHPDVFNILLQVLDDGRLTDSQGRTV 683
>gi|256760910|ref|ZP_05501490.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
faecalis T3]
gi|307288063|ref|ZP_07568079.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0109]
gi|422704997|ref|ZP_16762805.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX1302]
gi|256682161|gb|EEU21856.1| ATP-dependent Clp protease, ATP-binding subunit [Enterococcus
faecalis T3]
gi|306500941|gb|EFM70256.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0109]
gi|315163552|gb|EFU07569.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX1302]
Length = 831
Score = 43.1 bits (100), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDTIGKRRLALSIAE 531
+L +L + V Q +++ ++ + +S A+ F+ G +GK LA ++AE
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIRRARSGLKDPARPIGSFMFLGPTGVGKTELAKALAE 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS + L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 571 AMFGSEEALIRVDMSEFMEKYSTSR--LIGSPPGYVGYEEGGQLTEKIRQRPYSVILLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 629 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 657
>gi|227533946|ref|ZP_03963995.1| ATP-binding Clp protease subunit [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|227188418|gb|EEI68485.1| ATP-binding Clp protease subunit [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
Length = 835
Score = 43.1 bits (100), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAE 531
+L K+L E V Q +++ ++ + +S K F+ G +GK LA ++AE
Sbjct: 512 NLEKILHERVVGQDEAVSAVARAIRRARSGLKDPTRPIGSFMFLGPTGVGKTELAKALAE 571
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D + +DM + + S+ L+G Y EK+ VVL+++
Sbjct: 572 AMFGSEDAMIRVDMSEYMEKFSTSR--LIGAAPGYVGYDEGGQLTEKVRNKPYSVVLLDE 629
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG+ T++ G+ +
Sbjct: 630 VEKAHPDVFNILLQVLDDGYLTDSKGRRV 658
>gi|171778310|ref|ZP_02919516.1| hypothetical protein STRINF_00358 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379705415|ref|YP_005203874.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
infantarius subsp. infantarius CJ18]
gi|171283010|gb|EDT48434.1| ATPase family associated with various cellular activities (AAA)
[Streptococcus infantarius subsp. infantarius ATCC
BAA-102]
gi|374682114|gb|AEZ62403.1| ATP-dependent Clp protease, ATP-binding subunit [Streptococcus
infantarius subsp. infantarius CJ18]
Length = 702
Score = 43.1 bits (100), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 72/168 (42%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + ++ + FL G +GK LA +A
Sbjct: 410 DMGNRLQAKVIGQDKAVEAVARSIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLAL 469
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ ++L++
Sbjct: 470 DLFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNNNTLTERVRRNPYSIILLD 527
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 528 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 575
>gi|402813960|ref|ZP_10863554.1| chaperone protein ClpB [Paenibacillus alvei DSM 29]
gi|402507807|gb|EJW18328.1| chaperone protein ClpB [Paenibacillus alvei DSM 29]
Length = 551
Score = 42.7 bits (99), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
+ ++L + V Q +++ ++ + ++ K F+ G +GK LA ++AES
Sbjct: 238 MEEILHQRVIGQDEAVKAVSRAIRRARAGLKDPKRPMGSFIFLGPTGVGKTELARALAES 297
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEM-LMGTLKNY----------EKL------VVLVED 575
+FG + + IDM ++ + HS L+G Y EK+ VVL+++
Sbjct: 298 LFGDENAVIRIDM---SEYMEKHSTARLVGAPPGYVGYEEGGQLTEKVRRKPYSVVLLDE 354
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P+ +++L DG T++ G+V+
Sbjct: 355 IEKAHPEVFNILLQVLEDGRLTDSKGRVV 383
>gi|417793312|ref|ZP_12440592.1| AAA domain, Cdc48 family protein [Streptococcus oralis SK255]
gi|334273560|gb|EGL91904.1| AAA domain, Cdc48 family protein [Streptococcus oralis SK255]
Length = 701
Score = 42.7 bits (99), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ L+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLEHKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|313665264|ref|YP_004047135.1| chaperone protein ClpB [Mycoplasma leachii PG50]
gi|392388696|ref|YP_005907105.1| chaperone protein clpB [Mycoplasma leachii 99/014/6]
gi|312949195|gb|ADR23791.1| chaperone protein ClpB [Mycoplasma leachii PG50]
gi|339276341|emb|CBV66920.1| Chaperone protein clpB [Mycoplasma leachii 99/014/6]
Length = 713
Score = 42.7 bits (99), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 111/589 (18%), Positives = 225/589 (38%), Gaps = 87/589 (14%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P +E+I V ++ RK + N V++G+ A+V R+ +GDVP LK ++
Sbjct: 31 PVIGREEEISRVIQILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPTLLKNKRIL 90
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNF 186
+ + M + E + +K V+ + G I++ +L V ++ NN+
Sbjct: 91 ELDMGSLMAGAMYMGDYE---SRVKSVVNEIQKSNGEIILFIDELHLIVGAGKTGNNSGM 147
Query: 187 NGEIASCYNPINHLVSEVGKLVS-DCNSASSTRVWLMATASYQ-TYMKCQMRQPPLEIQW 244
+ +++ P G+L + + + R ++ A+ + + + + +P ++
Sbjct: 148 D--VSNLLKP----ALARGELKAIGSTTLNEYRQYIEKDAALERRFQRVLVNEPTVD--- 198
Query: 245 ALQAVSIPSGGLGL--SLHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCAECT 302
Q +SI G + H +H++ L + S + T + + D CA
Sbjct: 199 --QTISILRGLKDRFETYHGVRIHDNALVSAAKLSSRYITDRYLPDKAIDLVDEACASIK 256
Query: 303 SNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQKDELVEMRRKWNRSCHSLHQGRHTQSQF 362
+ +K++ L+ +S+ +KD+ + + +W + L + Q+
Sbjct: 257 TELASVPIELDQVNRKVM--QLEIETSALEKEKDD--KSKERWQEAKKELDSLKIEQANL 312
Query: 363 SSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSISFA---ESAMKPHNSSNSVAKFR 419
+ + K S S+ + + + A + ++ P + S+ F
Sbjct: 313 NQKWEKEKEQLNKINSVKSSIENLKQELETAQNDGNYKRAGEIQYSLLP-SLEKSLVLFE 371
Query: 420 RQQSCSTI-----EFNFGNCTRKPQGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQ 474
Q I E K G+ +D L S+E + + L
Sbjct: 372 IQSGTKMISEEVTEQEIAKVVSKSTGI--LVDKLISSEKERL----------------LN 413
Query: 475 RSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSI 529
DL L++ V Q +I ++ ++ +S K FL G +GK +A S+
Sbjct: 414 LEDL---LKKYVKGQDQAIKAVTSAIMRSRSGIKNPDKPIGSFLFLGPTGVGKTEVARSL 470
Query: 530 AESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL----------------VVL 572
A+ +F S + +DM ++ + HS L+G Y ++L
Sbjct: 471 ADILFNSPKKMIRLDM---SEYMEKHSVAKLIGAPPGYVGYEEGGRLTEAVRRNPYSIIL 527
Query: 573 VEDIDLADPQ----FIKILADGFETENFGK------VIFVLTKGDSSNY 611
++I+ A ++IL DG T++ GK I V+T +S Y
Sbjct: 528 FDEIEKAHSDVFNILLQILDDGRLTDSLGKTIDFKNTIIVMTSNIASQY 576
>gi|125539778|gb|EAY86173.1| hypothetical protein OsI_07552 [Oryza sativa Indica Group]
Length = 822
Score = 42.7 bits (99), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 29/145 (20%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
L E V Q +++ + + ++ ++ + FL G+ +GK LA ++AE +F S
Sbjct: 487 LHERVVGQDEAVKLVAQAVLRSRAGLEQPGQPIGSFLFLGSTGVGKTELAKALAEQLFDS 546
Query: 537 TDLLFHIDMRKRNDGVSSHSEM-LMGTLKNY----------EKL------VVLVEDIDLA 579
+L DM ++ V S S + L+G +Y EK+ V+L ++++ A
Sbjct: 547 EKMLIRFDM---SEFVGSGSVLRLIGAPPSYHGHQDGGQLTEKVRTRPYSVILFDEVEKA 603
Query: 580 DPQ----FIKILADGFETENFGKVI 600
DP F+++L DG T+ G+ +
Sbjct: 604 DPSVFNVFLQLLDDGMLTDGKGRTV 628
>gi|146307395|ref|YP_001187860.1| ATPase [Pseudomonas mendocina ymp]
gi|145575596|gb|ABP85128.1| ATPase AAA-2 domain protein [Pseudomonas mendocina ymp]
Length = 947
Score = 42.7 bits (99), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDTIGKRRLALSIAES 532
L + L E + Q +++ ++ + + ++ +K FL G +GK LA ++AES
Sbjct: 607 LEQRLHERLVGQDEAVRAVADAVRLSRAGLREGSKPVATFLFLGPTGVGKTELAKALAES 666
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
V+GS L IDM + + H+ L+G Y EK+ V+L+++
Sbjct: 667 VYGSEGALLRIDMSEYGE---RHTVARLVGAPPGYVGYDEGGQLTEKVRRKPYSVLLLDE 723
Query: 576 IDLADPQFIKILA----DGFETENFGKVI 600
I+ A P IL DG T+ G+V+
Sbjct: 724 IEKAHPDVYNILLQVFDDGRLTDGKGRVV 752
>gi|417984526|ref|ZP_12625147.1| Clp protease ATP-binding subunit [Lactobacillus casei 21/1]
gi|410525190|gb|EKQ00095.1| Clp protease ATP-binding subunit [Lactobacillus casei 21/1]
Length = 811
Score = 42.7 bits (99), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 27/148 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAES 532
L K+L E V Q +++ ++ + +S K F+ G +GK LA ++AE+
Sbjct: 513 LEKILHERVVGQDEAVSAVARAIRRARSGLKDPTRPIGSFMFLGPTGVGKTELAKALAEA 572
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDI 576
+FGS D + +DM + + S+ L+G Y EK+ VVL++++
Sbjct: 573 MFGSEDAMIRVDMSEYMEKFSTSR--LIGAAPGYVGYDEGGQLTEKVRNKPYSVVLLDEV 630
Query: 577 DLADPQ----FIKILADGFETENFGKVI 600
+ A P +++L DG+ T++ G+ +
Sbjct: 631 EKAHPDVFNILLQVLDDGYLTDSKGRRV 658
>gi|422728728|ref|ZP_16785136.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0012]
gi|315150882|gb|EFT94898.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0012]
Length = 831
Score = 42.7 bits (99), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDTIGKRRLALSIAE 531
+L +L + V Q +++ ++ + +S A+ F+ G +GK LA ++AE
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIRRARSGLKDPARPIGSFMFLGPTGVGKTELAKALAE 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS + L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 571 AMFGSEEALIRVDMSEFMEKYSTSR--LIGSPPGYVGYEEGGQLTEKIRQRPYSVILLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 629 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 657
>gi|259502080|ref|ZP_05744982.1| ATP-dependent Clp protease [Lactobacillus antri DSM 16041]
gi|259169893|gb|EEW54388.1| ATP-dependent Clp protease [Lactobacillus antri DSM 16041]
Length = 737
Score = 42.7 bits (99), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 26/157 (16%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ K L+ V Q +++ ++ + ++ FL G +GK
Sbjct: 402 SDVERLK--DMDKRLEGKVIGQDEAVEAVARAIRRNRAGFDEGESPIGSFLFVGPTGVGK 459
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRND---------------GVSSHSEMLMGTLKNYE 567
LA +A +FGS D + +DM + +D G +S L ++ +
Sbjct: 460 TELAKQLALDMFGSKDDIIRLDMSEYSDRTAVSKLIGTTAGYVGYDDNSNTLTEKVRRHP 519
Query: 568 KLVVLVEDIDLADPQFI----KILADGFETENFGKVI 600
++L+++I+ A+PQ I ++L DG T+ G I
Sbjct: 520 YSIILLDEIEKANPQVITLLLQVLDDGRLTDGQGNTI 556
>gi|347547703|ref|YP_004854031.1| putative endopeptidase Clp ATP-binding chain C [Listeria ivanovii
subsp. ivanovii PAM 55]
gi|346980774|emb|CBW84681.1| Putative endopeptidase Clp ATP-binding chain C [Listeria ivanovii
subsp. ivanovii PAM 55]
Length = 820
Score = 42.7 bits (99), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ K+L E V Q ++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 500 NMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 559
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
S+FG D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 560 SMFGDEDSMIRIDMSEYMEKFSTAR--LVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDE 617
Query: 576 IDLADP----QFIKILADGFETENFGKVI 600
I+ A P +++L DG T++ G+V+
Sbjct: 618 IEKAHPDVFNMLLQVLDDGRLTDSKGRVV 646
>gi|289167935|ref|YP_003446204.1| ATP-dependent Clp protease [Streptococcus mitis B6]
gi|288907502|emb|CBJ22339.1| ATP-dependent Clp protease [Streptococcus mitis B6]
Length = 767
Score = 42.7 bits (99), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 29/161 (18%)
Query: 473 LQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLAL 527
L+ S+L L E V Q D+ +SI E ++ K+ + FL G +GK A
Sbjct: 533 LRLSNLKNTLAEKVIGQSDATNSIAEAVIRSKTGFRNPKRPIGVFLFLGTSGVGKTETAK 592
Query: 528 SIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLV 573
++E + GS + L +DM + G + +L +K K VVL+
Sbjct: 593 ILSEELTGSVEDLIRLDMSEYQQEHEVSKLIGAPPGYAGFGRGGVLTNAVKRNPKAVVLL 652
Query: 574 EDIDLADPQ----FIKILADGFETENFGK------VIFVLT 604
++I+ A P+ +++ DG T+ G+ I +LT
Sbjct: 653 DEIEKAHPKVYDLMLQVFDDGILTDAMGQKVDFTNTIIILT 693
>gi|256854930|ref|ZP_05560294.1| ATP-dependent Clp protease [Enterococcus faecalis T8]
gi|307290756|ref|ZP_07570654.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0411]
gi|422684442|ref|ZP_16742680.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX4000]
gi|256710490|gb|EEU25534.1| ATP-dependent Clp protease [Enterococcus faecalis T8]
gi|306498176|gb|EFM67695.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX0411]
gi|315030822|gb|EFT42754.1| negative regulator of genetic competence ClpC/MecB [Enterococcus
faecalis TX4000]
Length = 831
Score = 42.7 bits (99), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDTIGKRRLALSIAE 531
+L +L + V Q +++ ++ + +S A+ F+ G +GK LA ++AE
Sbjct: 511 ELETILHQRVVGQNEAVEAVSRAIRRARSGLKDPARPIGSFMFLGPTGVGKTELAKALAE 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS + L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 571 AMFGSEEALIRVDMSEFMEKYSTSR--LIGSPPGYVGYEEGGQLTEKIRQRPYSVILLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 629 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 657
>gi|422420829|ref|ZP_16497782.1| negative regulator of genetic competence ClpC/MecB, partial
[Listeria seeligeri FSL S4-171]
gi|313639760|gb|EFS04509.1| negative regulator of genetic competence ClpC/MecB [Listeria
seeligeri FSL S4-171]
Length = 783
Score = 42.7 bits (99), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ K+L E V Q ++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 463 NMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 522
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
S+FG D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 523 SMFGDEDSMIRIDMSEYMEKFSTAR--LVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDE 580
Query: 576 IDLADP----QFIKILADGFETENFGKVI 600
I+ A P +++L DG T++ G+V+
Sbjct: 581 IEKAHPDVFNMLLQVLDDGRLTDSKGRVV 609
>gi|89100727|ref|ZP_01173582.1| class III stress response-related ATPase [Bacillus sp. NRRL
B-14911]
gi|89084544|gb|EAR63690.1| class III stress response-related ATPase [Bacillus sp. NRRL
B-14911]
Length = 817
Score = 42.7 bits (99), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 79/159 (49%), Gaps = 31/159 (19%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGK 522
+++AKL ++ ++L V Q +++ +I + + ++ K F+ G +GK
Sbjct: 494 TETAKLL--NMEEILHSRVIGQEEAVKAISKAVRRARAGLKDPKRPIGSFVFLGPTGVGK 551
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL-- 569
LA ++AE++FG D + IDM ++ + HS L+G+ Y EK+
Sbjct: 552 TELARALAEAMFGDEDAMIRIDM---SEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRR 608
Query: 570 ----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
VVL+++I+ A P +++L DG T++ G+ +
Sbjct: 609 KPYSVVLLDEIEKAHPDVFNILLQVLEDGRLTDSKGRTV 647
>gi|55821590|ref|YP_140032.1| ATP-dependent proteinase ATP-binding subunit [Streptococcus
thermophilus LMG 18311]
gi|55737575|gb|AAV61217.1| ATP-dependent proteinase ATP-binding subunit [Streptococcus
thermophilus LMG 18311]
Length = 699
Score = 42.7 bits (99), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 29/128 (22%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ D + +DM + +D + L+GT Y
Sbjct: 444 FLFVGPTGVGKTELAKQLALDLFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 501
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ ++L+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 502 NSNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 561
Query: 605 KGDSSNYE 612
YE
Sbjct: 562 SNAGFGYE 569
>gi|421489524|ref|ZP_15936901.1| ATPase, AAA family [Streptococcus anginosus SK1138]
gi|400374591|gb|EJP27507.1| ATPase, AAA family [Streptococcus anginosus SK1138]
Length = 710
Score = 42.7 bits (99), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 29/128 (22%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ D + +DM + +D + L+GT Y
Sbjct: 450 FLFVGPTGVGKTELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 507
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ ++L+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 508 NSNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 567
Query: 605 KGDSSNYE 612
YE
Sbjct: 568 SNAGFGYE 575
>gi|194292427|ref|YP_002008334.1| ATP-dependent protease [Cupriavidus taiwanensis LMG 19424]
gi|193226331|emb|CAQ72280.1| ATP-dependent protease [Cupriavidus taiwanensis LMG 19424]
Length = 929
Score = 42.7 bits (99), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 103/231 (44%), Gaps = 48/231 (20%)
Query: 415 VAKFRRQQSCSTIEFNFGNCTR---KPQGVEPRLDSL----KSNEGKE-VKITLA----- 461
+A+ +R+Q + F + G + RLD L + G E +++T+A
Sbjct: 507 IAQLKREQDYAASRKRFDEAKAFEDRITGKQKRLDELTEAWQRKTGSETLEVTVAAIAEV 566
Query: 462 ---LGNSELSDSAKLQRSDLYKV---LQENVPWQFDSIHSIVEVLVECKSA-----KKAT 510
L ++D + +R L K+ L+E + Q D++ ++ + + ++ +
Sbjct: 567 VSRLTGIPVTDLTQEERQKLLKMEERLRERIVGQDDAVVAVSDAVRLSRAGLGQANRPIA 626
Query: 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY--- 566
FL G +GK LA ++AESVFG + IDM ++ + H+ L+G Y
Sbjct: 627 TFLFLGPTGVGKTELAKALAESVFGDEQAIIRIDM---SEYMERHAVARLIGAPPGYVGY 683
Query: 567 -------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
E++ V+L+++I+ A P +++ DG T+ G+V+
Sbjct: 684 DEGGQLTERVRRQPYSVILLDEIEKAHPDVYNVLLQVFDDGRLTDGKGRVV 734
>gi|423334640|ref|ZP_17312418.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Lactobacillus
reuteri ATCC 53608]
gi|337728161|emb|CCC03252.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Lactobacillus
reuteri ATCC 53608]
Length = 734
Score = 42.7 bits (99), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 27/152 (17%)
Query: 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVEC-----KSAKKATWFLLQGNDTIGKRRLALS 528
Q DL K L E+V Q ++ + + KS + FL G +GK A
Sbjct: 425 QLRDLDKKLDEHVIGQTQAVDKVARAIRRNRIGLNKSGRPIGSFLFVGPTGVGKTETAKQ 484
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVL 572
+A +FGS D++ DM + D S+ L+G Y E++ ++L
Sbjct: 485 LALQLFGSKDVMIRFDMSEYMDKTSTSK--LIGAAPGYVGYEEAGQLTEQVRRHPYSLIL 542
Query: 573 VEDIDLADP----QFIKILADGFETENFGKVI 600
+++++ A P F++IL DG T++ G+ +
Sbjct: 543 LDEVEKAHPDVMHMFLQILDDGRLTDSQGRTV 574
>gi|306828889|ref|ZP_07462081.1| ATP-dependent Clp protease [Streptococcus mitis ATCC 6249]
gi|304429067|gb|EFM32155.1| ATP-dependent Clp protease [Streptococcus mitis ATCC 6249]
Length = 701
Score = 42.7 bits (99), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ L+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLEHKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|423284252|ref|ZP_17263136.1| hypothetical protein HMPREF1204_02674 [Bacteroides fragilis HMW
615]
gi|404580245|gb|EKA84956.1| hypothetical protein HMPREF1204_02674 [Bacteroides fragilis HMW
615]
Length = 844
Score = 42.7 bits (99), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 27/144 (18%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
LQ V Q D+I +V+ ++ + K F+ G +GK LA +A+ +FGS
Sbjct: 536 LQSKVIAQDDAIKKLVKAILRSRVGLKDPNKPIGTFMFLGPTGVGKTHLAKELAKYMFGS 595
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
+D L IDM + + + L+G Y EK+ +VL+++I+ A
Sbjct: 596 SDALIRIDMSEFMEKFTVSR--LVGAPPGYVGYEEGGQLTEKVRRKPYSIVLLDEIEKAH 653
Query: 581 PQ----FIKILADGFETENFGKVI 600
P ++++ +G T+++G+++
Sbjct: 654 PDVFNLLLQVMDEGRLTDSYGRMV 677
>gi|415886308|ref|ZP_11548131.1| Class III stress response-related ATPase, ClpC [Bacillus
methanolicus MGA3]
gi|387588961|gb|EIJ81282.1| Class III stress response-related ATPase, ClpC [Bacillus
methanolicus MGA3]
Length = 814
Score = 42.7 bits (99), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 79/162 (48%), Gaps = 29/162 (17%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDT 519
S+L+++ + L ++L V Q +++ +I + + ++ K F+ G
Sbjct: 489 SKLAETETEKLLKLEEILHSRVIGQEEAVKAISKAVRRARAGLKDPKRPIGSFIFLGPTG 548
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EK 568
+GK LA ++AE++FG D + IDM ++ + HS L+G+ Y EK
Sbjct: 549 VGKTELARALAEAMFGDEDAMIRIDM---SEYMEKHSTSRLVGSPPGYVGYEEGGQLTEK 605
Query: 569 L------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
+ V+L+++I+ A P +++L DG T++ G+ +
Sbjct: 606 VRRKPYSVILLDEIEKAHPDVFNILLQVLEDGRLTDSKGRTV 647
>gi|358464073|ref|ZP_09174042.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Streptococcus
sp. oral taxon 058 str. F0407]
gi|357067493|gb|EHI77609.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Streptococcus
sp. oral taxon 058 str. F0407]
Length = 701
Score = 42.7 bits (99), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ L+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLEHKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|322374936|ref|ZP_08049450.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sp. C300]
gi|321280436|gb|EFX57475.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sp. C300]
Length = 701
Score = 42.7 bits (99), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ L+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLEHKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|306825863|ref|ZP_07459202.1| ATP-dependent Clp protease [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|304432224|gb|EFM35201.1| ATP-dependent Clp protease [Streptococcus sp. oral taxon 071 str.
73H25AP]
Length = 701
Score = 42.7 bits (99), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ L+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLEHKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|331267028|ref|YP_004326658.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
oralis Uo5]
gi|326683700|emb|CBZ01318.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
oralis Uo5]
Length = 701
Score = 42.7 bits (99), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ L+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLEHKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|194014936|ref|ZP_03053553.1| negative regulator of genetic competence ClpC/mecB [Bacillus
pumilus ATCC 7061]
gi|194013962|gb|EDW23527.1| negative regulator of genetic competence ClpC/mecB [Bacillus
pumilus ATCC 7061]
Length = 661
Score = 42.7 bits (99), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 82/172 (47%), Gaps = 31/172 (18%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW--- 511
E K + +G + + K++ D+ L+ V Q ++ + + + ++ K+
Sbjct: 343 EQKTGIPVGKLQADEQTKMKEIDVR--LKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPT 400
Query: 512 --FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY-- 566
FL G +GK L+ ++AE +FGS D + +DM ++ + HS L+G+ Y
Sbjct: 401 GSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDM---SEYMEKHSVSKLIGSPPGYVG 457
Query: 567 --------EKL------VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
EK+ ++L+++I+ A P F++I+ DG T++ G+ +
Sbjct: 458 HDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTV 509
>gi|167766425|ref|ZP_02438478.1| hypothetical protein CLOSS21_00930 [Clostridium sp. SS2/1]
gi|317498298|ref|ZP_07956596.1| ATP-dependent chaperone ClpB [Lachnospiraceae bacterium 5_1_63FAA]
gi|167711834|gb|EDS22413.1| ATP-dependent chaperone protein ClpB [Clostridium sp. SS2/1]
gi|291560865|emb|CBL39665.1| ATP-dependent chaperone ClpB [butyrate-producing bacterium SSC/2]
gi|316894374|gb|EFV16558.1| ATP-dependent chaperone ClpB [Lachnospiraceae bacterium 5_1_63FAA]
Length = 861
Score = 42.7 bits (99), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 113/260 (43%), Gaps = 46/260 (17%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDT 519
++L++S + + L K+L E V Q +++ + E ++ K+ +K FL G
Sbjct: 549 AKLTESERNKTLHLDKILHERVVGQDEAVELVTESIIRSKAGIKDPSKPIGSFLFLGPTG 608
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL--------- 569
+GK LA ++AES+F + + IDM ++ + HS L+G Y
Sbjct: 609 VGKTELAKALAESLFDNEQNIVRIDM---SEYMEKHSVARLIGAPPGYVGYEEGGQLTEA 665
Query: 570 -------VVLVEDIDLADPQ----FIKILADGFETENFGK------VIFVLTKGDSSNYE 612
VVL ++I+ A P +++L DG T++ GK I ++T S+Y
Sbjct: 666 VRRKPYSVVLFDEIEKAHPDVFNILLQVLDDGRITDSKGKTVDFKNTILIMTSNIGSSY- 724
Query: 613 ERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEK---EDATSVTIDNVS 669
+E D N+ + + N D K EF N R+DE + T I N+
Sbjct: 725 -LLEGIDEDGNIKPEAQDMVMN-DLKNHFRPEFLN-----RLDETIMFKPLTKANITNII 777
Query: 670 SGNKKDFSRQSSFNTLDLNM 689
KD +R+ + L + +
Sbjct: 778 DLLVKDLNRRLADKELSVEL 797
>gi|81429391|ref|YP_396392.1| ATPase/chaperone ClpC, specificity factor for ClpP protease
[Lactobacillus sakei subsp. sakei 23K]
gi|78611034|emb|CAI56087.1| ATPase/chaperone ClpC, putative specificity factor for ClpP
protease [Lactobacillus sakei subsp. sakei 23K]
Length = 822
Score = 42.7 bits (99), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 33/158 (20%)
Query: 472 KLQRSD------LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTI 520
+LQR + L KVL E V Q ++I ++ + +S K F+ G +
Sbjct: 499 QLQRKESERLLQLEKVLHERVVGQEEAISAVARAIRRARSGLKDPKRPIGSFMFLGPTGV 558
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL- 569
GK LA ++AE++FGS D L +DM + + S+ L+G Y EK+
Sbjct: 559 GKTELAKALAEAMFGSEDNLIRVDMSEYMERYSTSR--LVGAAPGYVGYDEGGQLTEKVR 616
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETENFGK 598
VVL ++++ A P +++L DG+ T++ G+
Sbjct: 617 NKPYSVVLFDEVEKAHPDVFNILLQVLDDGYLTDSKGR 654
>gi|381182154|ref|ZP_09890974.1| ATP-dependent protease clpE [Listeriaceae bacterium TTU M1-001]
gi|380317959|gb|EIA21258.1| ATP-dependent protease clpE [Listeriaceae bacterium TTU M1-001]
Length = 716
Score = 42.7 bits (99), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 31/172 (18%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKAT---- 510
E K + +G E + +KL+ DL L E V Q +++ I + + + K
Sbjct: 394 EEKTGIPVGRLEQDEQSKLK--DLEAHLNEKVIGQKEAVKKITKAIRRGRVGLKQKNRPI 451
Query: 511 -WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY-- 566
FL G +GK L ++A +FGS D + +DM ++ + HS L+G+ Y
Sbjct: 452 GSFLFVGPTGVGKTELGRTLANELFGSEDAMIRLDM---SEFMEQHSVSKLIGSPPGYVG 508
Query: 567 --------EKL------VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
EK+ ++L+++++ A P F++IL DG T++ G+ +
Sbjct: 509 HEEAGQLTEKIRRNPYSILLLDEMEKAHPDVQHMFLQILEDGRLTDSQGRTV 560
>gi|417916689|ref|ZP_12560264.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Streptococcus
mitis bv. 2 str. SK95]
gi|342829172|gb|EGU63532.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Streptococcus
mitis bv. 2 str. SK95]
Length = 701
Score = 42.7 bits (99), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ L+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLEHKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|50251978|dbj|BAD27912.1| putative endopeptidase Clp ATP-binding chain [Oryza sativa Japonica
Group]
gi|125582406|gb|EAZ23337.1| hypothetical protein OsJ_07035 [Oryza sativa Japonica Group]
Length = 822
Score = 42.7 bits (99), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 70/145 (48%), Gaps = 29/145 (20%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
L E V Q +++ + + ++ ++ + FL G+ +GK LA ++AE +F S
Sbjct: 487 LHERVVGQDEAVKLVAQAVLRSRAGLEQPGQPIGSFLFLGSTGVGKTELAKALAEQLFDS 546
Query: 537 TDLLFHIDMRKRNDGVSSHSEM-LMGTLKNY----------EKL------VVLVEDIDLA 579
+L DM ++ V S S + L+G +Y EK+ V+L ++++ A
Sbjct: 547 EKMLIRFDM---SEFVGSGSVLRLIGAPPSYHGHQDGGQLTEKVRTRPYSVILFDEVEKA 603
Query: 580 DPQ----FIKILADGFETENFGKVI 600
DP F+++L DG T+ G+ +
Sbjct: 604 DPSVFNVFLQLLDDGMLTDGKGRTV 628
>gi|323703791|ref|ZP_08115429.1| ATPase AAA-2 domain protein [Desulfotomaculum nigrificans DSM 574]
gi|323531260|gb|EGB21161.1| ATPase AAA-2 domain protein [Desulfotomaculum nigrificans DSM 574]
Length = 818
Score = 42.7 bits (99), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 23/147 (15%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L +VL + V Q D++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 506 NLEEVLHQRVVGQDDAVKAVSRAVRRARAGLKDPKRPVGSFIFLGPTGVGKTELARALAE 565
Query: 532 SVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDID 577
++FG D L IDM + + G + E L ++ VVL+++I+
Sbjct: 566 ALFGDEDALVRIDMSEYMEKHAVSRLVGAPPGYVGYDEGGQLTEAVRRKPYSVVLLDEIE 625
Query: 578 LADPQ----FIKILADGFETENFGKVI 600
A P +++L DG T+ G+ +
Sbjct: 626 KAHPDVFNILLQVLEDGRLTDAKGRTV 652
>gi|306820444|ref|ZP_07454080.1| ATPase with chaperone activity, ATP-binding subunit [Eubacterium
yurii subsp. margaretiae ATCC 43715]
gi|304551519|gb|EFM39474.1| ATPase with chaperone activity, ATP-binding subunit [Eubacterium
yurii subsp. margaretiae ATCC 43715]
Length = 896
Score = 42.7 bits (99), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA----KKATWFLLQGNDTIGKRRLALSIAES 532
DL K L+E V Q +I I + + ++ KK + F+ G +GK +L S+A+
Sbjct: 595 DLEKRLKETVVGQDRAIEVIAKAIRRNRAGISAVKKPSSFIFVGPTGVGKTQLVKSLAKD 654
Query: 533 VFGSTDLLFHIDM 545
+FGS D++ +DM
Sbjct: 655 MFGSEDMIIRVDM 667
>gi|419781057|ref|ZP_14306889.1| ATPase, AAA family [Streptococcus oralis SK100]
gi|383184449|gb|EIC76963.1| ATPase, AAA family [Streptococcus oralis SK100]
Length = 701
Score = 42.7 bits (99), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ L+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLEHKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|414157899|ref|ZP_11414193.1| hypothetical protein HMPREF9188_00467 [Streptococcus sp. F0441]
gi|410870444|gb|EKS18401.1| hypothetical protein HMPREF9188_00467 [Streptococcus sp. F0441]
Length = 701
Score = 42.7 bits (99), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ L+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLEHKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|319940270|ref|ZP_08014622.1| ATPase AAA-2 domain-containing protein [Streptococcus anginosus
1_2_62CV]
gi|319810572|gb|EFW06908.1| ATPase AAA-2 domain-containing protein [Streptococcus anginosus
1_2_62CV]
Length = 710
Score = 42.7 bits (99), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 29/128 (22%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ D + +DM + +D + L+GT Y
Sbjct: 450 FLFVGPTGVGKTELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 507
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ ++L+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 508 NSNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 567
Query: 605 KGDSSNYE 612
YE
Sbjct: 568 SNAGFGYE 575
>gi|319654839|ref|ZP_08008914.1| class III stress response-like ATPase [Bacillus sp. 2_A_57_CT2]
gi|317393402|gb|EFV74165.1| class III stress response-like ATPase [Bacillus sp. 2_A_57_CT2]
Length = 816
Score = 42.7 bits (99), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L ++L V Q +++ +I + + ++ K F+ G +GK LA ++AE
Sbjct: 501 NLEEILHSRVIGQEEAVKAISKAVRRARAGLKDPKRPIGSFVFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
++FG D + IDM ++ + HS L+G+ Y EK+ VVL++
Sbjct: 561 AMFGDEDAMIRIDM---SEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLD 617
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P +++L DG T++ G+ +
Sbjct: 618 EIEKAHPDVFNILLQVLEDGRLTDSKGRTV 647
>gi|261417579|ref|YP_003251261.1| ATPase AAA [Geobacillus sp. Y412MC61]
gi|319765237|ref|YP_004130738.1| ATPase AAA [Geobacillus sp. Y412MC52]
gi|261374036|gb|ACX76779.1| ATPase AAA-2 domain protein [Geobacillus sp. Y412MC61]
gi|317110103|gb|ADU92595.1| ATPase AAA-2 domain protein [Geobacillus sp. Y412MC52]
Length = 810
Score = 42.7 bits (99), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 79/162 (48%), Gaps = 29/162 (17%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDT 519
S+L+++ + L ++L V Q +++ ++ + + ++ K F+ G
Sbjct: 489 SKLAETETERLLKLEEILHSRVVGQDEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTG 548
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EK 568
+GK LA ++AE++FG D L IDM ++ + HS L+G+ Y EK
Sbjct: 549 VGKTELARALAEAMFGDEDALIRIDM---SEYMEKHSTSRLIGSPPGYVGYEEGGQLTEK 605
Query: 569 L------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
+ VVL+++++ A P +++L DG T++ G+ +
Sbjct: 606 VRRKPYSVVLLDEMEKAHPDVFNILLQVLEDGRLTDSKGRTV 647
>gi|406588424|ref|ZP_11063034.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
sp. GMD1S]
gi|404468127|gb|EKA13149.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
sp. GMD1S]
Length = 701
Score = 42.7 bits (99), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ L+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLEHKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|417933754|ref|ZP_12577074.1| ATPase, AAA family [Streptococcus mitis bv. 2 str. F0392]
gi|340770324|gb|EGR92839.1| ATPase, AAA family [Streptococcus mitis bv. 2 str. F0392]
Length = 698
Score = 42.7 bits (99), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ L+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 398 SDIERLK--DMAHRLEHKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 455
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 456 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 513
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 514 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 570
>gi|332637144|ref|ZP_08416007.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Weissella
cibaria KACC 11862]
Length = 832
Score = 42.7 bits (99), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L KVL V Q +++ +I + +S K F+ G GK LA ++AE
Sbjct: 516 NLEKVLHNRVVGQDEAVSAIARSIRRARSGLKDPQRPIGTFMFLGPTGTGKTELAKALAE 575
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D + +DM + + S+ L+G+ Y EK+ VVL+++
Sbjct: 576 AMFGSEDNMIRVDMSEYREAYSASR--LVGSAPGYVGYEEGGQLTEKVRRNPYSVVLLDE 633
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
+ A P +++ DG+ T+ G+ +
Sbjct: 634 AEKAHPDIYNLMLQVFDDGYLTDAKGRKV 662
>gi|315612527|ref|ZP_07887440.1| ATP-dependent Clp protease [Streptococcus sanguinis ATCC 49296]
gi|315315508|gb|EFU63547.1| ATP-dependent Clp protease [Streptococcus sanguinis ATCC 49296]
Length = 701
Score = 42.7 bits (99), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ L+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLEHKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|293364245|ref|ZP_06610971.1| ATP-dependent Clp protease [Streptococcus oralis ATCC 35037]
gi|307702524|ref|ZP_07639478.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
oralis ATCC 35037]
gi|291317091|gb|EFE57518.1| ATP-dependent Clp protease [Streptococcus oralis ATCC 35037]
gi|307623936|gb|EFO02919.1| ATP-dependent Clp protease ATP-binding subunit clpL [Streptococcus
oralis ATCC 35037]
Length = 701
Score = 42.7 bits (99), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ L+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLEHKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|189218258|ref|YP_001938900.1| ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones
[Methylacidiphilum infernorum V4]
gi|189185116|gb|ACD82301.1| ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones
[Methylacidiphilum infernorum V4]
Length = 836
Score = 42.7 bits (99), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 27/144 (18%)
Query: 482 LQENVPWQFDSIHSIVEVL----VECKSAKKATW-FLLQGNDTIGKRRLALSIAESVFGS 536
L++ V Q ++I ++ L + K K+ F+ G +GK LA ++AE VFGS
Sbjct: 520 LRKRVIGQDEAIEALSRALQRSRADLKDPKRPIGSFIFLGPTGVGKTMLAKTLAEYVFGS 579
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
+ L IDM + + + L+G+ Y EK+ VVL ++I+ A
Sbjct: 580 AEALIQIDMSEYMEKFNVSR--LIGSPPGYVGYEEGGQLTEKIRRRPYSVVLFDEIEKAH 637
Query: 581 PQ----FIKILADGFETENFGKVI 600
P ++IL DG T++ G+ I
Sbjct: 638 PDVWNILLQILEDGIVTDSLGRKI 661
>gi|154483501|ref|ZP_02025949.1| hypothetical protein EUBVEN_01205 [Eubacterium ventriosum ATCC
27560]
gi|149735753|gb|EDM51639.1| ATPase family associated with various cellular activities (AAA)
[Eubacterium ventriosum ATCC 27560]
Length = 831
Score = 42.7 bits (99), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 35/165 (21%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVL----VECKSAKKATW-FLLQGNDTIGKRRLALSIAES 532
L +L + V Q +++ ++ + + V KSA + FL G +GK L+ ++AE+
Sbjct: 524 LESILHKRVVGQTEAVTAVAKAVRRGRVGLKSANRPIGSFLFLGPTGVGKTELSKTLAEA 583
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
VFGS D + +DM ++ + HS L+G+ Y +K+ VVL ++
Sbjct: 584 VFGSEDAMIRVDM---SEYMEKHSVSKLIGSPPGYVGYEEGGQLSDKVRRNPYSVVLFDE 640
Query: 576 IDLADPQ----FIKILADGFETENFGK------VIFVLTKGDSSN 610
I+ A P +++L DG T++ G+ I ++T +N
Sbjct: 641 IEKAHPDVFNILLQVLDDGQITDSKGRKVSFKNTIIIMTSNAGAN 685
>gi|429763360|ref|ZP_19295712.1| ATP-dependent chaperone protein ClpB [Anaerostipes hadrus DSM 3319]
gi|429178936|gb|EKY20201.1| ATP-dependent chaperone protein ClpB [Anaerostipes hadrus DSM 3319]
Length = 861
Score = 42.7 bits (99), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 35/179 (19%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDT 519
++L++S + + L K+L E V Q +++ + E ++ K+ +K FL G
Sbjct: 549 AKLTESERNKTLHLDKILHERVVGQDEAVELVTESIIRSKAGIKDPSKPIGSFLFLGPTG 608
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL--------- 569
+GK LA ++AES+F + + IDM ++ + HS L+G Y
Sbjct: 609 VGKTELAKALAESLFDNEQNIVRIDM---SEYMEKHSVARLIGAPPGYVGYEEGGQLTEA 665
Query: 570 -------VVLVEDIDLADPQ----FIKILADGFETENFGK------VIFVLTKGDSSNY 611
VVL ++I+ A P +++L DG T++ GK I ++T S+Y
Sbjct: 666 VRRKPYSVVLFDEIEKAHPDVFNILLQVLDDGRITDSKGKTVDFKNTILIMTSNIGSSY 724
>gi|419778187|ref|ZP_14304083.1| ATPase, AAA family [Streptococcus oralis SK10]
gi|383187504|gb|EIC79954.1| ATPase, AAA family [Streptococcus oralis SK10]
Length = 701
Score = 42.7 bits (99), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ L+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLEHKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|373499621|ref|ZP_09590027.1| chaperone ClpB [Prevotella micans F0438]
gi|371957045|gb|EHO74818.1| chaperone ClpB [Prevotella micans F0438]
Length = 862
Score = 42.7 bits (99), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P E+I+ V ++ R+ + N +++G+ + A+V GR+ RGDVP LK +
Sbjct: 177 PVIGRDEEIRRVLQILSRRTKNNPILIGEPGTGKTAIVEGLAGRIVRGDVPDNLKDKQIY 236
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
+ K E E LK + +T G I++ ++ V
Sbjct: 237 SLDMGALLAGAKYKGEFE---ERLKSVIKEVTQSEGNIILFIDEIHTLV 282
>gi|417939974|ref|ZP_12583262.1| ATPase, AAA family [Streptococcus oralis SK313]
gi|343388855|gb|EGV01440.1| ATPase, AAA family [Streptococcus oralis SK313]
Length = 701
Score = 42.7 bits (99), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ L+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLEHKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|270293385|ref|ZP_06199594.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sp. M143]
gi|270278234|gb|EFA24082.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sp. M143]
Length = 701
Score = 42.7 bits (99), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ L+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLEHKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|423271605|ref|ZP_17250575.1| hypothetical protein HMPREF1079_03657 [Bacteroides fragilis
CL05T00C42]
gi|423275491|ref|ZP_17254435.1| hypothetical protein HMPREF1080_03088 [Bacteroides fragilis
CL05T12C13]
gi|392697301|gb|EIY90487.1| hypothetical protein HMPREF1079_03657 [Bacteroides fragilis
CL05T00C42]
gi|392701939|gb|EIY95089.1| hypothetical protein HMPREF1080_03088 [Bacteroides fragilis
CL05T12C13]
Length = 844
Score = 42.7 bits (99), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 27/144 (18%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
LQ V Q D+I +V+ ++ + K F+ G +GK LA +A+ +FGS
Sbjct: 536 LQSKVIAQDDAIKKLVKAILRSRVGLKDPNKPIGTFMFLGPTGVGKTHLAKELAKYMFGS 595
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
+D L IDM + + + L+G Y EK+ +VL+++I+ A
Sbjct: 596 SDALIRIDMSEFMEKFTVSR--LVGAPPGYVGYEEGGQLTEKVRRKPYSIVLLDEIEKAH 653
Query: 581 PQ----FIKILADGFETENFGKVI 600
P ++++ +G T+++G+++
Sbjct: 654 PDVFNLLLQVMDEGRLTDSYGRMV 677
>gi|392529703|ref|ZP_10276840.1| ATP-dependent Clp protease [Carnobacterium maltaromaticum ATCC
35586]
gi|414084607|ref|YP_006993315.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Carnobacterium
maltaromaticum LMA28]
gi|412998191|emb|CCO12000.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Carnobacterium
maltaromaticum LMA28]
Length = 748
Score = 42.7 bits (99), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 8/129 (6%)
Query: 28 TSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHALFSSQKPASVSKEDIKLVFEVFLRKKR 87
T SGGG A + N +N A+ P +IK V E+ R+ +
Sbjct: 87 TQSGGGGKRPNGRQGGLLAEYGTNLTDMAKNGAI----DPVIGRDNEIKRVIEILNRRTK 142
Query: 88 RNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVT----LRFMKKEEV 143
N V++G+ A+V ++ GDVPQ+L VI+ A + +R +E +
Sbjct: 143 NNPVLIGEPGVGKTAVVEGLAQKIIEGDVPQKLMDKEVIRLDVASLVQGTGIRGQFEERM 202
Query: 144 EMNLTELKR 152
+ + ELK+
Sbjct: 203 QQLMDELKK 211
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 31/172 (18%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVEC-----KSAKKA 509
E+K + +G+ + + A+L+ +L + LQ++V Q +++ + + + K +
Sbjct: 413 EMKTNIPVGDIKEKEQAQLR--NLAEDLQQHVIGQNEAVEKVSKAIRRSRIGLNKKNRPI 470
Query: 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY-- 566
FL G +GK LA +A +FG+ D + DM ++ + HS L+G+ Y
Sbjct: 471 GSFLFVGPTGVGKTELAKQLAVELFGTADSIIRFDM---SEYMEKHSVAKLIGSPPGYVG 527
Query: 567 --------EKL------VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
EK+ +VL+++I+ A P F++IL DG T+ G+ +
Sbjct: 528 YDEAGQLTEKVRRNPYSIVLLDEIEKAHPDVMHMFLQILDDGRLTDAQGRTV 579
>gi|60681972|ref|YP_212116.1| negative regulator of genetic competence [Bacteroides fragilis NCTC
9343]
gi|265764025|ref|ZP_06092593.1| ATP-dependent chaperone ClpB [Bacteroides sp. 2_1_16]
gi|336410061|ref|ZP_08590543.1| hypothetical protein HMPREF1018_02559 [Bacteroides sp. 2_1_56FAA]
gi|375358729|ref|YP_005111501.1| negative regulator of genetic competence [Bacteroides fragilis
638R]
gi|383118624|ref|ZP_09939365.1| hypothetical protein BSHG_2624 [Bacteroides sp. 3_2_5]
gi|423250261|ref|ZP_17231277.1| hypothetical protein HMPREF1066_02287 [Bacteroides fragilis
CL03T00C08]
gi|423255764|ref|ZP_17236693.1| hypothetical protein HMPREF1067_03337 [Bacteroides fragilis
CL03T12C07]
gi|423257137|ref|ZP_17238060.1| hypothetical protein HMPREF1055_00337 [Bacteroides fragilis
CL07T00C01]
gi|423265892|ref|ZP_17244895.1| hypothetical protein HMPREF1056_02582 [Bacteroides fragilis
CL07T12C05]
gi|60493406|emb|CAH08192.1| negative regulator of genetic competence [Bacteroides fragilis NCTC
9343]
gi|251945928|gb|EES86335.1| hypothetical protein BSHG_2624 [Bacteroides sp. 3_2_5]
gi|263256633|gb|EEZ27979.1| ATP-dependent chaperone ClpB [Bacteroides sp. 2_1_16]
gi|301163410|emb|CBW22961.1| negative regulator of genetic competence [Bacteroides fragilis
638R]
gi|335946442|gb|EGN08248.1| hypothetical protein HMPREF1018_02559 [Bacteroides sp. 2_1_56FAA]
gi|387778613|gb|EIK40708.1| hypothetical protein HMPREF1055_00337 [Bacteroides fragilis
CL07T00C01]
gi|392649846|gb|EIY43518.1| hypothetical protein HMPREF1067_03337 [Bacteroides fragilis
CL03T12C07]
gi|392653647|gb|EIY47302.1| hypothetical protein HMPREF1066_02287 [Bacteroides fragilis
CL03T00C08]
gi|392703550|gb|EIY96694.1| hypothetical protein HMPREF1056_02582 [Bacteroides fragilis
CL07T12C05]
Length = 844
Score = 42.7 bits (99), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 27/144 (18%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
LQ V Q D+I +V+ ++ + K F+ G +GK LA +A+ +FGS
Sbjct: 536 LQSKVIAQDDAIKKLVKAILRSRVGLKDPNKPIGTFMFLGPTGVGKTHLAKELAKYMFGS 595
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
+D L IDM + + + L+G Y EK+ +VL+++I+ A
Sbjct: 596 SDALIRIDMSEFMEKFTVSR--LVGAPPGYVGYEEGGQLTEKVRRKPYSIVLLDEIEKAH 653
Query: 581 PQ----FIKILADGFETENFGKVI 600
P ++++ +G T+++G+++
Sbjct: 654 PDVFNLLLQVMDEGRLTDSYGRMV 677
>gi|53713701|ref|YP_099693.1| ATP-dependent Clp protease [Bacteroides fragilis YCH46]
gi|52216566|dbj|BAD49159.1| ATP-dependent Clp protease [Bacteroides fragilis YCH46]
Length = 844
Score = 42.7 bits (99), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 27/144 (18%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
LQ V Q D+I +V+ ++ + K F+ G +GK LA +A+ +FGS
Sbjct: 536 LQSKVIAQDDAIKKLVKAILRSRVGLKDPNKPIGTFMFLGPTGVGKTHLAKELAKYMFGS 595
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
+D L IDM + + + L+G Y EK+ +VL+++I+ A
Sbjct: 596 SDALIRIDMSEFMEKFTVSR--LVGAPPGYVGYEEGGQLTEKVRRKPYSIVLLDEIEKAH 653
Query: 581 PQ----FIKILADGFETENFGKVI 600
P ++++ +G T+++G+++
Sbjct: 654 PDVFNLLLQVMDEGRLTDSYGRMV 677
>gi|402309393|ref|ZP_10828386.1| putative negative regulator of genetic competence ClpC/MecB
[Eubacterium sp. AS15]
gi|400372360|gb|EJP25304.1| putative negative regulator of genetic competence ClpC/MecB
[Eubacterium sp. AS15]
Length = 896
Score = 42.7 bits (99), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA----KKATWFLLQGNDTIGKRRLALSIAES 532
DL K L+E V Q +I I + + ++ KK + F+ G +GK +L S+A+
Sbjct: 595 DLEKRLKETVVGQDRAIEVIAKAIRRNRAGISAVKKPSSFIFVGPTGVGKTQLVKSLAKD 654
Query: 533 VFGSTDLLFHIDM 545
+FGS D++ +DM
Sbjct: 655 MFGSEDMIIRVDM 667
>gi|242075808|ref|XP_002447840.1| hypothetical protein SORBIDRAFT_06g016690 [Sorghum bicolor]
gi|241939023|gb|EES12168.1| hypothetical protein SORBIDRAFT_06g016690 [Sorghum bicolor]
Length = 689
Score = 42.7 bits (99), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 30/146 (20%)
Query: 482 LQENVPWQFDSIHSIVEVLVECK------SAKKATWFLLQGNDTIGKRRLALSIAESVFG 535
L E V Q ++++S+ + ++ + + FL G+ +GK LA ++AE +F
Sbjct: 306 LHERVVGQEEAVNSVAQAVLRARIGLDNCGRQPIGCFLFLGSTGVGKTELAKALAEQLFD 365
Query: 536 STDLLFHIDMRKRNDGVSSHSEM-LMGTLKNY----------EKL------VVLVEDIDL 578
S ++L DM ++ V S S + L+G +Y EK+ V+L ++++
Sbjct: 366 SENMLIRFDM---SESVGSSSVLRLIGAPPSYTGYEDGGQLTEKVRRRPYSVILFDEVEK 422
Query: 579 ADP----QFIKILADGFETENFGKVI 600
ADP +++L DG T+ G+ +
Sbjct: 423 ADPAVFDAILQLLDDGVLTDGKGRAV 448
>gi|445381956|ref|ZP_21427165.1| ATP-dependent proteinase ATP-binding subunit [Streptococcus
thermophilus MTCC 5460]
gi|445394775|ref|ZP_21428899.1| ATP-dependent proteinase ATP-binding subunit [Streptococcus
thermophilus MTCC 5461]
gi|444748785|gb|ELW73737.1| ATP-dependent proteinase ATP-binding subunit [Streptococcus
thermophilus MTCC 5461]
gi|444748848|gb|ELW73797.1| ATP-dependent proteinase ATP-binding subunit [Streptococcus
thermophilus MTCC 5460]
Length = 699
Score = 42.7 bits (99), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 29/128 (22%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ D + +DM + +D + L+GT Y
Sbjct: 444 FLFVGPTGVGKTELAKQLALDLFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 501
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ ++L+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 502 NSNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 561
Query: 605 KGDSSNYE 612
YE
Sbjct: 562 SNAGFGYE 569
>gi|401684181|ref|ZP_10816064.1| ATPase, AAA family [Streptococcus sp. BS35b]
gi|400186486|gb|EJO20698.1| ATPase, AAA family [Streptococcus sp. BS35b]
Length = 701
Score = 42.7 bits (99), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ L+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLEHKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|251772527|gb|EES53093.1| putative ATP-dependent Clp protease, ATPase subunit [Leptospirillum
ferrodiazotrophum]
Length = 813
Score = 42.7 bits (99), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 79/189 (41%), Gaps = 39/189 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE-- 557
F+ G +GK LA ++AE +FG+ D L +DM + + G + E
Sbjct: 541 FIFLGPTGVGKTELARTLAEVMFGNEDALIRVDMSEYMERFNVSRLTGAPPGYVGYEEGG 600
Query: 558 MLMGTLKNYEKLVVLVEDIDLADPQ----FIKILADGFETENFGK------VIFVLTKGD 607
L ++ V+L ++I+ A P +++L DGF T++ G+ + ++T
Sbjct: 601 QLTEKVRRRPYSVILFDEIEKAHPDMFNVLLQVLDDGFITDSLGRKIDFKNTVLIMT--- 657
Query: 608 SSNYEERIENQDSVINMTLKVNERNQNF-------DHKRKAEWEFANKTKSPRI----DE 656
SN R +D + E ++F D KR EF N+ + DE
Sbjct: 658 -SNLGARAIEKDGSLGFARGAGEVREDFIKTTIQDDLKRTFNPEFLNRIDEIVVFHPLDE 716
Query: 657 KEDATSVTI 665
K+ A V I
Sbjct: 717 KQLAAIVDI 725
>gi|417924059|ref|ZP_12567512.1| ATPase, AAA family [Streptococcus mitis SK569]
gi|342836288|gb|EGU70503.1| ATPase, AAA family [Streptococcus mitis SK569]
Length = 701
Score = 42.7 bits (99), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ L+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLEHKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|294672907|ref|YP_003573523.1| ATP-dependent chaperone protein ClpB [Prevotella ruminicola 23]
gi|294473088|gb|ADE82477.1| ATP-dependent chaperone protein ClpB [Prevotella ruminicola 23]
Length = 836
Score = 42.7 bits (99), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P ++I+ V ++ R+ + N +++G+ + A+V GR+ RGDVP+ LK +
Sbjct: 178 PVIGRDDEIRRVLQILSRRTKNNPILIGEPGTGKTAIVEGLAGRIVRGDVPENLKDKQLY 237
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
+ K E E LK ++ +T G I++ ++ V
Sbjct: 238 SLDMGALVAGAKYKGEFE---ERLKSVINEVTKAEGRIILFIDEIHTLV 283
>gi|221632469|ref|YP_002521690.1| chaperone clpB 1 [Thermomicrobium roseum DSM 5159]
gi|221157168|gb|ACM06295.1| chaperone clpB 1 [Thermomicrobium roseum DSM 5159]
Length = 870
Score = 42.7 bits (99), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P ++I+ V +V LR+ + N V++G+ A+V R+ RGDVP+ L+ ++
Sbjct: 180 PVIGRDDEIRRVIQVLLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVRGDVPEGLRDKRIV 239
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
+ A + + E E LK +D + + G I++ ++ V
Sbjct: 240 QLDLAAMLAGAKYRGEFE---ERLKAVLDEIRASEGEIIVFIDEVHTVV 285
>gi|56418613|ref|YP_145931.1| ATP-dependent Clp protease ATPase [Geobacillus kaustophilus HTA426]
gi|297528454|ref|YP_003669729.1| ATPase AAA [Geobacillus sp. C56-T3]
gi|375006890|ref|YP_004980520.1| negative regulator of genetic competence [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|448236388|ref|YP_007400446.1| ATP-dependent Clp protease [Geobacillus sp. GHH01]
gi|56378455|dbj|BAD74363.1| ATP-dependent Clp protease ATPase subunit [Geobacillus kaustophilus
HTA426]
gi|297251706|gb|ADI25152.1| ATPase AAA-2 domain protein [Geobacillus sp. C56-T3]
gi|359285736|gb|AEV17420.1| Negative regulator of genetic competence [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|445205230|gb|AGE20695.1| ATP-dependent Clp protease [Geobacillus sp. GHH01]
Length = 810
Score = 42.7 bits (99), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 79/162 (48%), Gaps = 29/162 (17%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDT 519
S+L+++ + L ++L V Q +++ ++ + + ++ K F+ G
Sbjct: 489 SKLAETETERLLKLEEILHSRVVGQDEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTG 548
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EK 568
+GK LA ++AE++FG D L IDM ++ + HS L+G+ Y EK
Sbjct: 549 VGKTELARALAEAMFGDEDALIRIDM---SEYMEKHSTSRLIGSPPGYVGYEEGGQLTEK 605
Query: 569 L------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
+ VVL+++++ A P +++L DG T++ G+ +
Sbjct: 606 VRRKPYSVVLLDEMEKAHPDVFNILLQVLEDGRLTDSKGRTV 647
>gi|398809981|ref|ZP_10568817.1| type VI secretion ATPase, ClpV1 family [Variovorax sp. CF313]
gi|398084384|gb|EJL75071.1| type VI secretion ATPase, ClpV1 family [Variovorax sp. CF313]
Length = 925
Score = 42.7 bits (99), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 8/145 (5%)
Query: 20 ASSVFQCYTSSGGGVFS-SPCSPSSSEAHHFINPNTFWQNHALFSSQK-------PASVS 71
AS Q G G+ S +P S + A + + A+ ++K P +
Sbjct: 156 ASPEAQMRAQDGTGMGSGAPGEDSGAMAPAAMGKGDALKKFAVDLTEKAKKGEMDPVTGR 215
Query: 72 KEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFA 131
E+I+ + ++ +R+++ N ++ G+ A+V F R+ RGDVP +LK ++
Sbjct: 216 DEEIRQIVDILMRRRQNNPLLTGEAGVGKTAVVEGFAQRLARGDVPPQLKDVKLLTLDIG 275
Query: 132 PVTLRFMKKEEVEMNLTELKRKVDS 156
+ K E E L ++ +V S
Sbjct: 276 LLQAGASMKGEFEQRLRQVIDEVQS 300
>gi|333922411|ref|YP_004495991.1| ATPase AAA-2 domain-containing protein [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|333747972|gb|AEF93079.1| ATPase AAA-2 domain protein [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 818
Score = 42.7 bits (99), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 23/147 (15%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L +VL + V Q D++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 506 NLEEVLHQRVVGQDDAVKAVSRAVRRARAGLKDPKRPVGSFIFLGPTGVGKTELARALAE 565
Query: 532 SVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDID 577
++FG D L IDM + + G + E L ++ VVL+++I+
Sbjct: 566 ALFGDEDALVRIDMSEYMEKHAVSRLVGAPPGYVGYDEGGQLTEAVRRKPYSVVLLDEIE 625
Query: 578 LADPQ----FIKILADGFETENFGKVI 600
A P +++L DG T+ G+ +
Sbjct: 626 KAHPDVFNILLQVLEDGRLTDAKGRTV 652
>gi|184154509|ref|YP_001842849.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
fermentum IFO 3956]
gi|183225853|dbj|BAG26369.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
fermentum IFO 3956]
Length = 697
Score = 42.7 bits (99), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 19/108 (17%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND---------------GVSSHS 556
FL G +GK LA +A +FGST+ L +DM + D G +S
Sbjct: 447 FLFVGPTGVGKTELAKQLALDMFGSTNDLIRLDMSEYTDRTAVSKLIGTTAGYVGYDDNS 506
Query: 557 EMLMGTLKNYEKLVVLVEDIDLADPQFI----KILADGFETENFGKVI 600
L ++ + +VL+++I+ A+PQ I ++L DG T+ G +
Sbjct: 507 NTLTEKVRRHPYSIVLLDEIEKANPQVITLLLQVLDDGRLTDGQGNTV 554
>gi|406576676|ref|ZP_11052302.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
sp. GMD6S]
gi|404460796|gb|EKA07038.1| ATP-dependent Clp protease ATP-binding subunit ClpL [Streptococcus
sp. GMD6S]
Length = 701
Score = 42.7 bits (99), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ L+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLEHKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|418975290|ref|ZP_13523199.1| ATPase, AAA family [Streptococcus oralis SK1074]
gi|383348661|gb|EID26620.1| ATPase, AAA family [Streptococcus oralis SK1074]
Length = 701
Score = 42.7 bits (99), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ L+ V Q ++ ++ + ++ + FL G +GK
Sbjct: 401 SDIERLK--DMAHRLEHKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|418028014|ref|ZP_12666605.1| ClpL [Streptococcus thermophilus CNCM I-1630]
gi|354688785|gb|EHE88812.1| ClpL [Streptococcus thermophilus CNCM I-1630]
Length = 512
Score = 42.7 bits (99), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 29/128 (22%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ D + +DM + +D + L+GT Y
Sbjct: 257 FLFVGPTGVGKTELAKQLALDLFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 314
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ ++L+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 315 NSNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 374
Query: 605 KGDSSNYE 612
YE
Sbjct: 375 SNAGFGYE 382
>gi|333398215|ref|ZP_08480028.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Leuconostoc
gelidum KCTC 3527]
gi|406599592|ref|YP_006744938.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Leuconostoc
gelidum JB7]
gi|406371127|gb|AFS40052.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Leuconostoc
gelidum JB7]
Length = 687
Score = 42.7 bits (99), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 29/187 (15%)
Query: 437 KPQGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSI 496
KPQ V + D LK E K + +G+ L D+ Q +L L ++V Q ++ ++
Sbjct: 351 KPQSVTEK-DILKIIEDK---TDIPVGD--LKDNEANQLQELDNQLAQHVIGQDIAVQTV 404
Query: 497 VEVLVE-----CKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND- 550
+ + KS + FL G +GK LA +A+ +FGS D L DM + +
Sbjct: 405 AKAIRRNRIGLTKSGRPIGSFLFVGPTGVGKTELAKQLAQEMFGSKDALIRFDMSEYMEK 464
Query: 551 -----------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADP----QFIKILADGFET 593
G + E L ++ + ++L+++++ A P F++IL DG T
Sbjct: 465 HAISKMIGAPAGYVGYEEAGQLTEQVRRHPYSLILIDEVEKAHPDVTNMFLQILDDGRLT 524
Query: 594 ENFGKVI 600
+ G V+
Sbjct: 525 DAQGHVV 531
>gi|294497454|ref|YP_003561154.1| ATP-dependent chaperone ClpB [Bacillus megaterium QM B1551]
gi|294347391|gb|ADE67720.1| ATP-dependent chaperone ClpB [Bacillus megaterium QM B1551]
Length = 867
Score = 42.7 bits (99), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 23/146 (15%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L +LQ+ V Q +++ + + ++ ++ K F+ G +GK LA ++A S
Sbjct: 570 LESILQQRVIGQDEAVSLVTDAVIRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAHS 629
Query: 533 VFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDL 578
+F S + + IDM + + G + E L ++ VVL+++I+
Sbjct: 630 LFDSEEQMVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLLDEIEK 689
Query: 579 ADPQ----FIKILADGFETENFGKVI 600
A P+ ++IL DG T++ GKVI
Sbjct: 690 AHPEVFNVLLQILDDGRATDSKGKVI 715
>gi|404482398|ref|ZP_11017625.1| hypothetical protein HMPREF1135_00685 [Clostridiales bacterium
OBRC5-5]
gi|404344559|gb|EJZ70916.1| hypothetical protein HMPREF1135_00685 [Clostridiales bacterium
OBRC5-5]
Length = 829
Score = 42.7 bits (99), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 31/159 (19%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVL----VECKSAKKATW-FLLQGNDTIGK 522
+DS +L ++L KVL E V Q ++++++ + V K K+ FL G +GK
Sbjct: 499 NDSQRL--NNLEKVLHERVVGQEEAVNAVARAIRRGRVGLKDPKRPIGSFLFLGPTGVGK 556
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL-- 569
L+ ++A S+FGS L +DM ++ + HS ++G+ Y EK+
Sbjct: 557 TELSKALAYSMFGSESALIRVDM---SEYMEKHSVSKMVGSPPGYVGYDEGGQLSEKVRR 613
Query: 570 ----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
V+L ++I+ A P +++L DG T++ G+ +
Sbjct: 614 NPYSVILFDEIEKAHPDVFNILLQVLDDGHITDSSGRTV 652
>gi|298243411|ref|ZP_06967218.1| ATPase AAA-2 domain protein [Ktedonobacter racemifer DSM 44963]
gi|297556465|gb|EFH90329.1| ATPase AAA-2 domain protein [Ktedonobacter racemifer DSM 44963]
Length = 1208
Score = 42.7 bits (99), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 23/142 (16%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAESVFGS 536
L+E V Q ++++ + + + ++ K A FL G +GK LA ++A VFGS
Sbjct: 886 LKERVIGQDEAVNRVTQAIQVARAGLKPRHRPAGVFLFLGPTGVGKTELARALAAEVFGS 945
Query: 537 TDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADPQ 582
D L +DM + + G + + L G L+ VVL+++++ A P+
Sbjct: 946 DDHLIRVDMSEYMEKHAVSRMIGAPPGYVGYDQEGQLTGKLRRRPHCVVLLDEVEKAHPE 1005
Query: 583 ----FIKILADGFETENFGKVI 600
F+++ G T+ G +
Sbjct: 1006 VFDLFLQVFDAGRLTDAQGHTV 1027
>gi|138893757|ref|YP_001124210.1| negative regulator of genetic competence ClpC/MecB [Geobacillus
thermodenitrificans NG80-2]
gi|196251133|ref|ZP_03149812.1| ATPase AAA-2 domain protein [Geobacillus sp. G11MC16]
gi|134265270|gb|ABO65465.1| Negative regulator of genetic competence ClpC/MecB [Geobacillus
thermodenitrificans NG80-2]
gi|196209374|gb|EDY04154.1| ATPase AAA-2 domain protein [Geobacillus sp. G11MC16]
Length = 811
Score = 42.7 bits (99), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 79/162 (48%), Gaps = 29/162 (17%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDT 519
S+L+++ + L ++L V Q +++ ++ + + ++ K F+ G
Sbjct: 490 SKLAETETERLLKLEEILHARVVGQDEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTG 549
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EK 568
+GK LA ++AE++FG D L IDM ++ + HS L+G+ Y EK
Sbjct: 550 VGKTELARALAEAMFGDEDALIRIDM---SEYMEKHSTSRLIGSPPGYVGYEEGGQLTEK 606
Query: 569 L------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
+ VVL+++++ A P +++L DG T++ G+ +
Sbjct: 607 VRRKPYSVVLLDEMEKAHPDVFNILLQVLEDGRLTDSKGRTV 648
>gi|422872339|ref|ZP_16918832.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis SK1087]
gi|328944589|gb|EGG38750.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis SK1087]
Length = 712
Score = 42.7 bits (99), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 29/132 (21%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ + + +DM + +D + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDIFGTKEAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ ++L+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 506 NNNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 565
Query: 605 KGDSSNYEERIE 616
YE +E
Sbjct: 566 SNAGFGYEAGLE 577
>gi|295702826|ref|YP_003595901.1| ATP-dependent chaperone ClpB [Bacillus megaterium DSM 319]
gi|294800485|gb|ADF37551.1| ATP-dependent chaperone ClpB [Bacillus megaterium DSM 319]
Length = 867
Score = 42.7 bits (99), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 23/146 (15%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L +LQ+ V Q +++ + + ++ ++ K F+ G +GK LA ++A S
Sbjct: 570 LESILQQRVIGQDEAVSLVTDAVIRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAHS 629
Query: 533 VFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDL 578
+F S + + IDM + + G + E L ++ VVL+++I+
Sbjct: 630 LFDSEEQMVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLLDEIEK 689
Query: 579 ADPQ----FIKILADGFETENFGKVI 600
A P+ ++IL DG T++ GKVI
Sbjct: 690 AHPEVFNVLLQILDDGRATDSKGKVI 715
>gi|312135577|ref|YP_004002915.1| ATPase AAA-2 domain-containing protein [Caldicellulosiruptor
owensensis OL]
gi|311775628|gb|ADQ05115.1| ATPase AAA-2 domain protein [Caldicellulosiruptor owensensis OL]
Length = 829
Score = 42.7 bits (99), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 70/148 (47%), Gaps = 27/148 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVL----VECKSAKKATW-FLLQGNDTIGKRRLALSIAES 532
L +VL V Q +++ ++ + V K K+ F+ G +GK LA ++AE+
Sbjct: 509 LEEVLHRRVVGQDEAVKAVARAIRRGRVGLKDPKRPIGSFIFLGPTGVGKTELARALAEA 568
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDI 576
+FG+ D L IDM + + + L+G+ Y EK+ VVL ++I
Sbjct: 569 LFGTEDALIRIDMSEYMEKFNVSK--LIGSPPGYVGYEEGGQLTEKVRRRPYSVVLFDEI 626
Query: 577 DLADPQ----FIKILADGFETENFGKVI 600
+ A P ++IL DG T++ G+ +
Sbjct: 627 EKAHPDVFNLLLQILDDGRLTDSQGRTV 654
>gi|403238378|ref|ZP_10916964.1| Class III stress response-related ATPase, ClpC [Bacillus sp.
10403023]
Length = 814
Score = 42.7 bits (99), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 74/150 (49%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVL----VECKSAKKATW-FLLQGNDTIGKRRLALSIAE 531
++ ++L V Q +++ ++ + + K K+ T F+ G +GK LA ++AE
Sbjct: 502 NMEEILHSRVIGQEEAVKAVSKAVRRSRAGLKDPKRPTGSFIFLGPTGVGKTELARALAE 561
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
S+FG D + +DM ++ + HS L+G+ Y EK+ V+L++
Sbjct: 562 SIFGDEDAMIRVDM---SEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVILLD 618
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P +++L DG T++ G+ +
Sbjct: 619 EIEKAHPDVFNILLQVLEDGRLTDSKGRTV 648
>gi|83319920|ref|YP_424350.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Mycoplasma
capricolum subsp. capricolum ATCC 27343]
gi|83283806|gb|ABC01738.1| ATP-dependent Clp protease, ATP-binding subunit ClpB, putative
[Mycoplasma capricolum subsp. capricolum ATCC 27343]
Length = 713
Score = 42.7 bits (99), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 111/589 (18%), Positives = 225/589 (38%), Gaps = 87/589 (14%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P +E+I V ++ RK + N V++G+ A+V R+ +GDVP LK ++
Sbjct: 31 PVIGREEEISRVIQILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPTLLKDKRIL 90
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNF 186
+ + M + E + +K V+ + G I++ +L V ++ NN+
Sbjct: 91 ELDMGSLMAGAMYMGDYE---SRVKAVVNEIQKSNGEIILFIDELHLIVGAGKTGNNSGM 147
Query: 187 NGEIASCYNPINHLVSEVGKLVS-DCNSASSTRVWLMATASYQ-TYMKCQMRQPPLEIQW 244
+ +++ P G+L + + + R ++ A+ + + + + +P ++
Sbjct: 148 D--VSNLLKP----ALARGELKAIGSTTLNEYRQYIEKDAALERRFQRVLVSEPTID--- 198
Query: 245 ALQAVSIPSGGLGL--SLHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCAECT 302
Q +SI G + H +H++ L + S + T + + D CA
Sbjct: 199 --QTISILRGLKDRFETYHGVRIHDNALVSAAKLSSRYITDRYLPDKAIDLVDEACASIK 256
Query: 303 SNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQKDELVEMRRKWNRSCHSLHQGRHTQSQF 362
+ +K++ L+ +S+ +KD+ + + +W + L + Q+
Sbjct: 257 TELASIPIELDQVNRKVM--QLEIETSALEKEKDD--KSKERWQEAKKELDSLKIEQATL 312
Query: 363 SSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSISFA---ESAMKPHNSSNSVAKFR 419
+ + K S+ + + + A + ++ P + S+A F
Sbjct: 313 NKKWEKEKEELSKINLVKSSIENLKQELETAQNDGNYKRAGEIKYSLLP-SLEKSLALFE 371
Query: 420 RQQSCSTI-----EFNFGNCTRKPQGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQ 474
Q I E K G+ +D L S+E + + L
Sbjct: 372 TQTGAKMISEEVTEQEIAKVVSKSTGI--LVDKLISSEKERL----------------LN 413
Query: 475 RSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSI 529
DL L++ V Q +I ++ ++ +S K FL G +GK +A S+
Sbjct: 414 LEDL---LKKYVKGQDQAIKAVTSAIMRSRSGIKNPDKPIGSFLFLGPTGVGKTEVARSL 470
Query: 530 AESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL----------------VVL 572
A+ +F S + +DM ++ + HS L+G Y ++L
Sbjct: 471 ADILFNSPKKMIRLDM---SEYMEKHSVAKLIGAPPGYVGYEEGGRLTEAVRRNPYSIIL 527
Query: 573 VEDIDLADPQ----FIKILADGFETENFGK------VIFVLTKGDSSNY 611
++I+ A ++IL DG T++ GK I V+T +S Y
Sbjct: 528 FDEIEKAHSDVFNILLQILDDGRLTDSLGKTIDFKNTIIVMTSNIASQY 576
>gi|257417375|ref|ZP_05594369.1| UvrB/UvrC protein [Enterococcus faecalis ARO1/DG]
gi|257159203|gb|EEU89163.1| UvrB/UvrC protein [Enterococcus faecalis ARO1/DG]
Length = 831
Score = 42.7 bits (99), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKS-----AKKATWFLLQGNDTIGKRRLALSIAE 531
+L +L + V Q +++ ++ + +S A+ F+ G +GK LA ++AE
Sbjct: 511 ELETILHQRVVSQNEAVEAVSRAIRRARSGLKDPARPIGSFMFLGPTGVGKTELAKALAE 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS + L +DM + + S+ L+G+ Y EK+ V+L+++
Sbjct: 571 AMFGSEEALIRVDMSEFMEKYSTSR--LIGSPPGYVGYEEGGQLTEKIRQRPYSVILLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T+ G+ +
Sbjct: 629 VEKAHPDVFNILLQVLDDGHLTDAKGRKV 657
>gi|384048740|ref|YP_005496757.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Bacillus
megaterium WSH-002]
gi|345446431|gb|AEN91448.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Bacillus
megaterium WSH-002]
Length = 867
Score = 42.4 bits (98), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 23/146 (15%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L +LQ+ V Q +++ + + ++ ++ K F+ G +GK LA ++A S
Sbjct: 570 LESILQQRVIGQDEAVSLVTDAVIRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAHS 629
Query: 533 VFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDL 578
+F S + + IDM + + G + E L ++ VVL+++I+
Sbjct: 630 LFDSEEQMVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLLDEIEK 689
Query: 579 ADPQ----FIKILADGFETENFGKVI 600
A P+ ++IL DG T++ GKVI
Sbjct: 690 AHPEVFNVLLQILDDGRATDSKGKVI 715
>gi|330444364|ref|YP_004377350.1| endopeptidase Clp ATP-binding chain clpC [Chlamydophila pecorum
E58]
gi|328807474|gb|AEB41647.1| endopeptidase Clp ATP-binding chain clpC [Chlamydophila pecorum
E58]
Length = 847
Score = 42.4 bits (98), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 23/166 (13%)
Query: 456 VKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----AT 510
V + + ++ L+++ + L LQ+ + Q D++ SI + ++ K
Sbjct: 504 VSLQTGIPSARLTEAESEKLLKLEHTLQQKIIGQNDAVSSICRAIRRSRTGIKDPNRPTG 563
Query: 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE- 557
FL G +GK LA IA +FG D L +DM + + G H E
Sbjct: 564 SFLFLGPTGVGKTLLAQQIAIEMFGGEDALIQVDMSEYMEKFAATKMMGSPPGYVGHEEG 623
Query: 558 -MLMGTLKNYEKLVVLVEDIDLADPQ----FIKILADGFETENFGK 598
L ++ VVL ++I+ A P ++IL G T++FG+
Sbjct: 624 GHLTEQVRRRPYCVVLFDEIEKAHPDIMDLMLQILEQGRLTDSFGR 669
>gi|283779663|ref|YP_003370418.1| ATPase AAA [Pirellula staleyi DSM 6068]
gi|283438116|gb|ADB16558.1| ATPase AAA-2 domain protein [Pirellula staleyi DSM 6068]
Length = 852
Score = 42.4 bits (98), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 37/168 (22%)
Query: 469 DSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKR 523
DS +L + + + L + V Q ++ +I + + +S K A F+ G +GK
Sbjct: 516 DSLRLMK--MEEELHKKVISQDQAVTAIAKAVRRTRSGLKDPRRPAGCFVFAGPTGVGKT 573
Query: 524 RLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL--- 569
LA ++AE +FG D L IDM ++ + H+ L+G Y EK+
Sbjct: 574 LLAKALAEFMFGDADALIQIDM---SEYMEKHNVSRLIGAPPGYVGYEEGGQLTEKIRRR 630
Query: 570 ---VVLVEDIDLADPQ----FIKILADGFETENFGK------VIFVLT 604
VVL+++I+ A P ++++ +G T++FG+ VI ++T
Sbjct: 631 PYAVVLLDEIEKAHPDVFNTLLQVMEEGRLTDSFGRRVDFRNVILIMT 678
>gi|212637926|ref|YP_002314446.1| Class III stress response-related ATPase, ClpC [Anoxybacillus
flavithermus WK1]
gi|212559406|gb|ACJ32461.1| Class III stress response-related ATPase, ClpC [Anoxybacillus
flavithermus WK1]
Length = 813
Score = 42.4 bits (98), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L ++L V Q +++ ++ + + ++ K F+ G +GK LA ++AE+
Sbjct: 505 LEEILHSRVIGQEEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAEA 564
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + IDM ++ + HS L+G+ Y EK+ V+L+++
Sbjct: 565 MFGDEDAMIRIDM---SEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVILLDE 621
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T++ G+ +
Sbjct: 622 IEKAHPDVFNILLQVLEDGRLTDSKGRTV 650
>gi|414161188|ref|ZP_11417449.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
simulans ACS-120-V-Sch1]
gi|410876450|gb|EKS24356.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
simulans ACS-120-V-Sch1]
Length = 821
Score = 42.4 bits (98), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L L + V Q D++ SI + + ++ K F+ G +GK LA ++AE
Sbjct: 501 NLEDTLHKRVIGQKDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
S+FG D + +DM ++ + H+ L+G Y EK+ V+L +
Sbjct: 561 SMFGDEDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFD 617
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+++ A P +++L DGF T+ G+ +
Sbjct: 618 EVEKAHPDVFNIMLQVLDDGFLTDTKGRRV 647
>gi|385825240|ref|YP_005861582.1| ATP-dependent clp protease ATP-binding subunit clpA-like protein
[Lactobacillus johnsonii DPC 6026]
gi|329666684|gb|AEB92632.1| ATP-dependent clp protease ATP-binding subunit clpA-like protein
[Lactobacillus johnsonii DPC 6026]
Length = 822
Score = 42.4 bits (98), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 27/146 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L +L E V Q ++I ++ + +S K FL G +GK LA ++A +
Sbjct: 510 LESILHERVIGQDEAISAVSRAIRRSRSGIKDENRPIGSFLFLGPTGVGKTELAKALAAA 569
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDI 576
VFGS + +DM + D +++ L+G+ Y E++ V+L++++
Sbjct: 570 VFGSERNIIRVDMSEYMDQIATSK--LIGSAPGYVGYEEGGQLSERVRRNPYSVILLDEV 627
Query: 577 DLADPQ----FIKILADGFETENFGK 598
+ A P +++L +GF T++ G+
Sbjct: 628 EKAHPDVFNLLLQVLDEGFLTDSKGR 653
>gi|315274644|ref|ZP_07869487.1| negative regulator of genetic competence ClpC/MecB, partial
[Listeria marthii FSL S4-120]
gi|313615725|gb|EFR89010.1| negative regulator of genetic competence ClpC/MecB [Listeria
marthii FSL S4-120]
Length = 338
Score = 42.4 bits (98), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ K+L E V Q ++ ++ + ++ K F+ G +GK LA ++AE
Sbjct: 18 NMEKLLHERVIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 77
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
S+FG D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 78 SMFGDEDSMIRIDMSEYMEKFSTAR--LVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDE 135
Query: 576 IDLADP----QFIKILADGFETENFGKVI 600
I+ A P +++L DG T++ G+V+
Sbjct: 136 IEKAHPDVFNMLLQVLDDGRLTDSKGRVV 164
>gi|226309775|ref|YP_002769669.1| negative regulator of genetic competence [Brevibacillus brevis NBRC
100599]
gi|226092723|dbj|BAH41165.1| negative regulator of genetic competence [Brevibacillus brevis NBRC
100599]
Length = 815
Score = 42.4 bits (98), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
+ ++L + V Q +++ SI + ++ K F+ G +GK LA ++AE+
Sbjct: 506 MEEILHDRVIGQDEAVKSISRAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARAVAET 565
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEM-LMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + HS L+G Y EK+ V+L+++
Sbjct: 566 LFGDEDAMIRVDM---SEYMEKHSTARLVGAPPGYVGFDEGGQLTEKVRRKPYSVILLDE 622
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T++ G+ +
Sbjct: 623 IEKAHPDVFNILLQVLDDGRLTDSKGRTV 651
>gi|167629433|ref|YP_001679932.1| clpc ATPase [Heliobacterium modesticaldum Ice1]
gi|167592173|gb|ABZ83921.1| clpc ATPase [Heliobacterium modesticaldum Ice1]
Length = 814
Score = 42.4 bits (98), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 74/156 (47%), Gaps = 25/156 (16%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGK 522
S+SA+L + L + L V Q +++ ++ + ++ K F+ G +GK
Sbjct: 497 SESARLLK--LEEELHRRVIGQDEAVAAVSRAVRRARAGLKDPKRPIGSFIFLGPTGVGK 554
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEK 568
LA ++AE++FG D + IDM + + G H E L ++
Sbjct: 555 TELARALAEALFGQEDAMVRIDMSEYMEKHSVSRLVGAPPGYIGHDEGGQLTEAVRRRPY 614
Query: 569 LVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
V+L+++I+ A+P+ +++L DG T++ G+ +
Sbjct: 615 SVILLDEIEKANPEVFNILLQVLEDGRLTDSKGRTV 650
>gi|15559055|gb|AAL02102.1|AF404759_1 ClpB protease [Bacteroides fragilis 638R]
Length = 442
Score = 42.4 bits (98), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 27/144 (18%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
LQ V Q D+I +V+ ++ + K F+ G +GK LA +A+ +FGS
Sbjct: 134 LQSKVIAQDDAIKKLVKAILRSRVGLKDPNKPIGTFMFLGPTGVGKTHLAKELAKYMFGS 193
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
+D L IDM + + + L+G Y EK+ +VL+++I+ A
Sbjct: 194 SDALIRIDMSEFMEKFTVSR--LVGAPPGYVGYEEGGQLTEKVRRKPYSIVLLDEIEKAH 251
Query: 581 PQ----FIKILADGFETENFGKVI 600
P ++++ +G T+++G+++
Sbjct: 252 PDVFNLLLQVMDEGRLTDSYGRMV 275
>gi|15487810|gb|AAL00952.1|AF401667_2 chaperone ATP-dependent protease [Lactobacillus sakei]
Length = 709
Score = 42.4 bits (98), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 33/158 (20%)
Query: 472 KLQRSD------LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTI 520
+LQR + L KVL E V Q ++I ++ + +S K F+ G +
Sbjct: 499 QLQRKESERLLQLEKVLHERVVGQEEAISAVARAIRRARSGLKDPKRPIGSFMFLGPTGV 558
Query: 521 GKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL- 569
GK LA ++AE++FGS D L +DM + + S+ L+G Y EK+
Sbjct: 559 GKTELAKALAEAMFGSEDNLIRVDMSEYMERYSTSR--LVGAAPGYVGYDEGGQLTEKVR 616
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETENFGK 598
VVL ++++ A P +++L DG+ T++ G+
Sbjct: 617 NKPYSVVLFDEVEKAHPDVFNILLQVLDDGYLTDSKGR 654
>gi|373460205|ref|ZP_09551960.1| hypothetical protein HMPREF9944_00224 [Prevotella maculosa OT 289]
gi|371956290|gb|EHO74079.1| hypothetical protein HMPREF9944_00224 [Prevotella maculosa OT 289]
Length = 842
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 79/159 (49%), Gaps = 27/159 (16%)
Query: 467 LSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKAT-----WFLLQGNDTIG 521
++++ ++ ++ KVL+E V Q ++I +V+ + + KA F+ G +G
Sbjct: 520 IAEAENVKLKNMGKVLKEQVIAQDNAIEKMVKAIQRNRVGIKAPNHPIGVFMFLGPTGVG 579
Query: 522 KRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL-- 569
K LA +AE +FGS + L IDM + ++ S ++ L+G Y EK+
Sbjct: 580 KTYLAKKLAEYMFGSDEALIRIDMSEYSE--SFNTSRLIGAPPGYVGYEEGGQLTEKVRR 637
Query: 570 ----VVLVEDIDLAD----PQFIKILADGFETENFGKVI 600
++L+++I+ A +++L +G T+ G++I
Sbjct: 638 HPYSIILLDEIEKAHGNIFSMLLQVLDEGRLTDGNGRLI 676
>gi|398813140|ref|ZP_10571842.1| ATPase with chaperone activity, ATP-binding subunit [Brevibacillus
sp. BC25]
gi|398039301|gb|EJL32439.1| ATPase with chaperone activity, ATP-binding subunit [Brevibacillus
sp. BC25]
Length = 816
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
+ ++L + V Q +++ SI + ++ K F+ G +GK LA ++AE+
Sbjct: 507 MEEILHDRVIGQDEAVKSISRAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARAVAET 566
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEM-LMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + HS L+G Y EK+ V+L+++
Sbjct: 567 LFGDEDAMIRVDM---SEYMEKHSTARLVGAPPGYVGFDEGGQLTEKVRRKPYSVILLDE 623
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T++ G+ +
Sbjct: 624 IEKAHPDVFNILLQVLDDGRLTDSKGRTV 652
>gi|335029491|ref|ZP_08522998.1| ATPase, AAA family [Streptococcus infantis SK1076]
gi|334268788|gb|EGL87220.1| ATPase, AAA family [Streptococcus infantis SK1076]
Length = 312
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 34/168 (20%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAE 531
D+ LQ V Q ++ ++ + + ++ + FL G +GK LA +A
Sbjct: 19 DMGHRLQTKVIGQDKAVEAVAKAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLAL 78
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL------VVLVE 574
+FG+ D + +DM + +D + L+GT Y E++ +VL++
Sbjct: 79 DMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNNNTLTERVRRNPYSIVLLD 136
Query: 575 DIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
+I+ ADPQ I ++L DG T+ NF + + T YE
Sbjct: 137 EIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 184
>gi|419818122|ref|ZP_14342222.1| ATP-dependent Clp protease ATP-binding subunit ClpL, partial
[Streptococcus sp. GMD4S]
gi|404464720|gb|EKA10244.1| ATP-dependent Clp protease ATP-binding subunit ClpL, partial
[Streptococcus sp. GMD4S]
Length = 646
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 29/128 (22%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ D + +DM + +D + L+GT Y
Sbjct: 393 FLFVGPTGVGKTELAKQLALDMFGTKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 450
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ ++L+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 451 NSNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 510
Query: 605 KGDSSNYE 612
YE
Sbjct: 511 SNAGFGYE 518
>gi|227891733|ref|ZP_04009538.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
salivarius ATCC 11741]
gi|227866458|gb|EEJ73879.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
salivarius ATCC 11741]
Length = 702
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 26/157 (16%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ ++ K L+ V Q ++++++ + ++ + FL G +GK
Sbjct: 397 SDIERLK--EIGKRLKGKVIGQDEAVNAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGK 454
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRND---------------GVSSHSEMLMGTLKNYE 567
LA +A +FGS D + +DM + +D G +S L ++
Sbjct: 455 TELAKQLALDMFGSKDAIIRLDMSEYSDRTAVSKLIGTTAGYVGYDDNSNTLTEHVRRNP 514
Query: 568 KLVVLVEDIDLADPQFI----KILADGFETENFGKVI 600
++L+++I+ ADPQ I ++L DG T+ G I
Sbjct: 515 YSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 551
>gi|227544413|ref|ZP_03974462.1| ATP-binding Clp protease subunit [Lactobacillus reuteri CF48-3A]
gi|338202962|ref|YP_004649107.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactobacillus
reuteri SD2112]
gi|227185609|gb|EEI65680.1| ATP-binding Clp protease subunit [Lactobacillus reuteri CF48-3A]
gi|336448202|gb|AEI56817.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactobacillus
reuteri SD2112]
Length = 830
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L KVL + V Q +++ + + + +S K F+ G +GK LA ++A
Sbjct: 511 NLEKVLHQRVIGQDEAVTVVAKAIRRARSGLKDPSRPIGSFMFLGPTGVGKTELAKALAA 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 571 AMFGSEDNMIRIDMSEYMEKYSTSR--LIGAAPGYVGYDEGGQLTEKVRQHPYSVVLLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
+ A P +++L DG+ T+ G+ +
Sbjct: 629 AEKAHPDVFNLLLQVLDDGYLTDAKGRRV 657
>gi|418472966|ref|ZP_13042612.1| Clp protease ATP binding subunit [Streptomyces coelicoflavus
ZG0656]
gi|371546359|gb|EHN74873.1| Clp protease ATP binding subunit [Streptomyces coelicoflavus
ZG0656]
Length = 842
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 67/142 (47%), Gaps = 23/142 (16%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
L E V Q +++ + + ++ ++ + FL G +GK LA ++AE++FGS
Sbjct: 534 LHERVVGQDEAVRVVSDAVLRSRAGLSSPDRPIGSFLFLGPTGVGKTELARALAEALFGS 593
Query: 537 TDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADPQ 582
D + +DM + + G H E L ++ + ++L+++++ A P
Sbjct: 594 EDRMVRLDMSEYQERHTVSRLVGAPPGYVGHEEAGQLTEVVRRHPYSLLLLDEVEKAHPD 653
Query: 583 ----FIKILADGFETENFGKVI 600
+++L DG T++ G+ +
Sbjct: 654 VFNILLQVLDDGRLTDSQGRTV 675
>gi|326804075|ref|YP_004321893.1| AAA family ATPase [Aerococcus urinae ACS-120-V-Col10a]
gi|326650700|gb|AEA00883.1| ATPase, AAA family [Aerococcus urinae ACS-120-V-Col10a]
Length = 852
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 90/199 (45%), Gaps = 36/199 (18%)
Query: 451 NEGKEVKITLA-LGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKS---- 505
NE EV LA + +E+ Q + + L+EN D I I+ ++ + +S
Sbjct: 530 NEIHEVVAQLAHMPKAEMESDPAAQIAKIESDLRENFVGADDLIDKIISLVTQSRSGLFN 589
Query: 506 -AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLK 564
AK +L G GK LA IA+++FG + L +DM + D +S + L+G+
Sbjct: 590 QAKPLLSLILAGESGTGKTYLARLIAQALFGGEEHLIALDMSEFRD--ASSNTKLIGSPP 647
Query: 565 NY----------EKL------VVLVEDIDLADPQFI----KILADGFETENFGK------ 598
Y E++ VVL+E+ID A P +I+A G +N +
Sbjct: 648 GYIGYESNNHLTEQIRTRPYSVVLLENIDYAHPDIFALIKQIVASGQIRDNKSRDVDFSN 707
Query: 599 --VIFVLTKGDSSNYEERI 615
+I LT +++Y++++
Sbjct: 708 TVIIATLTLDGNADYQKQV 726
>gi|300362397|ref|ZP_07058573.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactobacillus
gasseri JV-V03]
gi|300353388|gb|EFJ69260.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactobacillus
gasseri JV-V03]
Length = 822
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 27/146 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L +L E V Q +I ++ + +S K FL G +GK LA ++A +
Sbjct: 510 LESILHERVIGQDKAISAVSRAIRRSRSGIKDENRPIGSFLFLGPTGVGKTELAKALAAA 569
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDI 576
VFGS + +DM + D V++ L+G+ Y E++ V+L++++
Sbjct: 570 VFGSERNIIRVDMSEYMDQVATSK--LIGSAPGYVGYEEGGQLSERVRRNPYSVILLDEV 627
Query: 577 DLADPQ----FIKILADGFETENFGK 598
+ A P +++L +GF T++ G+
Sbjct: 628 EKAHPDVFNLLLQVLDEGFLTDSKGR 653
>gi|116628955|ref|YP_814127.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus gasseri ATCC 33323]
gi|116094537|gb|ABJ59689.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus gasseri ATCC 33323]
Length = 838
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 27/148 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L +L E V Q +I ++ + +S K FL G +GK LA ++A +
Sbjct: 526 LESILHERVIGQDKAISAVSRAIRRSRSGIKDENRPIGSFLFLGPTGVGKTELAKALAAA 585
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDI 576
VFGS + +DM + D V++ L+G+ Y E++ V+L++++
Sbjct: 586 VFGSERNIIRVDMSEYMDQVATSK--LIGSAPGYVGYEEGGQLSERVRRNPYSVILLDEV 643
Query: 577 DLADPQ----FIKILADGFETENFGKVI 600
+ A P +++L +GF T++ G+ +
Sbjct: 644 EKAHPDVFNLLLQVLDEGFLTDSKGRKV 671
>gi|194466966|ref|ZP_03072953.1| ATPase AAA-2 domain protein [Lactobacillus reuteri 100-23]
gi|194454002|gb|EDX42899.1| ATPase AAA-2 domain protein [Lactobacillus reuteri 100-23]
Length = 830
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAE 531
+L KVL + V Q +++ + + + +S K F+ G +GK LA ++A
Sbjct: 511 NLEKVLHQRVIGQDEAVAVVAKAIRRARSGLKDPRRPIGSFMFLGPTGVGKTELAKALAA 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 571 AMFGSEDNMIRIDMSEYMEKYSTSR--LIGAAPGYIGYDEGGQLTEKVRQHPYSVVLLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
+ A P +++L DG+ T+ G+ +
Sbjct: 629 AEKAHPDVFNLLLQVLDDGYLTDAKGRRV 657
>gi|406906024|gb|EKD47311.1| hypothetical protein ACD_66C00123G0003 [uncultured bacterium]
Length = 747
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 41/201 (20%)
Query: 445 LDSLKSNEGKEVK-ITLALGNSELSDSAKLQR-----------SDLYKVLQENVPWQFDS 492
+ S N+ KE+K IT +L LS + + DL K L++NV Q
Sbjct: 409 IGSYARNQNKEIKTITQSLVIEALSQATGISTQTIKRQTKQVLGDLDKTLKKNVLSQDKI 468
Query: 493 IHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547
I +IV L + K + FL G +GK LA IA++ F + L +DM +
Sbjct: 469 IDNIVHHLKRAHAGLANTKKPLSSFLFVGPSGVGKTELAKQIAKAFFNGSRPLLRLDMSE 528
Query: 548 RNDGVSS--------------HSEMLMGTLKNYEKLVVLVEDIDLADPQ----FIKILAD 589
+ ++ + +L ++NY + V+L ++I+ A P ++IL +
Sbjct: 529 YKEAFNASKLLGAPAGYVGYKDTNVLADHVRNYPRSVILFDEIEKAHPDIHNLLLQILEE 588
Query: 590 GFETE------NFGKVIFVLT 604
G + +FG+ I +LT
Sbjct: 589 GSIRDASGRELSFGQSIVILT 609
>gi|402311568|ref|ZP_10830509.1| negative regulator of genetic competence ClpC/MecB [Lachnospiraceae
bacterium ICM7]
gi|400371740|gb|EJP24690.1| negative regulator of genetic competence ClpC/MecB [Lachnospiraceae
bacterium ICM7]
Length = 829
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 31/159 (19%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVL----VECKSAKKATW-FLLQGNDTIGK 522
+DS +L ++L KVL E V Q ++++++ + V K K+ FL G +GK
Sbjct: 499 NDSQRL--NNLEKVLHERVVGQEEAVNAVARAIRRGRVGLKDPKRPIGSFLFLGPTGVGK 556
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL-- 569
L+ ++A S+FGS L +DM ++ + HS ++G+ Y EK+
Sbjct: 557 TELSKALAYSMFGSESALIRVDM---SEYMEKHSVSKMVGSPPGYVGYDEGGQLSEKVRR 613
Query: 570 ----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
V+L ++I+ A P +++L DG T++ G+ +
Sbjct: 614 NPYSVILFDEIEKAHPDVFNILLQVLDDGHITDSSGRTV 652
>gi|399055773|ref|ZP_10743423.1| ATPase with chaperone activity, ATP-binding subunit [Brevibacillus
sp. CF112]
gi|433543324|ref|ZP_20499734.1| negative regulator of genetic competence [Brevibacillus agri
BAB-2500]
gi|398046636|gb|EJL39230.1| ATPase with chaperone activity, ATP-binding subunit [Brevibacillus
sp. CF112]
gi|432185453|gb|ELK42944.1| negative regulator of genetic competence [Brevibacillus agri
BAB-2500]
Length = 816
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
+ ++L + V Q +++ SI + ++ K F+ G +GK LA ++AE+
Sbjct: 507 MEEILHDRVIGQDEAVKSISRAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARAVAET 566
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEM-LMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + HS L+G Y EK+ V+L+++
Sbjct: 567 LFGDEDAMIRVDM---SEYMEKHSTARLVGAPPGYVGFDEGGQLTEKVRRKPYSVILLDE 623
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T++ G+ +
Sbjct: 624 IEKAHPDVFNILLQVLDDGRLTDSKGRTV 652
>gi|430747124|ref|YP_007206253.1| chaperone ATPase [Singulisphaera acidiphila DSM 18658]
gi|430018844|gb|AGA30558.1| ATPase with chaperone activity, ATP-binding subunit [Singulisphaera
acidiphila DSM 18658]
Length = 842
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 31/165 (18%)
Query: 460 LALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLL 514
+ L E ++ +L R + + +Q+ V Q ++I I + + +S K F+
Sbjct: 493 IPLTRLEAEETGRLLR--MEEEIQKKVISQTEAIKRISQAVRRSRSGLKDPKRPIGCFIF 550
Query: 515 QGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY------- 566
G +GK LA ++AE +FG +D L IDM ++ + H+ L+G Y
Sbjct: 551 AGPTGVGKTLLAKALAEFMFGDSDALIQIDM---SEYMEKHNVSRLIGAPPGYVGYEEGG 607
Query: 567 ---EKL------VVLVEDIDLADP----QFIKILADGFETENFGK 598
EK+ VVL+++I+ A P ++I+ +G T++FG+
Sbjct: 608 QLTEKIRRRPYAVVLLDEIEKAHPDVYNMLLQIMEEGRLTDSFGR 652
>gi|384439305|ref|YP_005654029.1| ATPase AAA-2 [Thermus sp. CCB_US3_UF1]
gi|359290438|gb|AEV15955.1| ATPase AAA-2 [Thermus sp. CCB_US3_UF1]
Length = 736
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 37/174 (21%)
Query: 469 DSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKR 523
D KL R L + L++ V Q ++I ++ L + + A FL G +GK
Sbjct: 434 DDEKLMR--LEEELKKRVVGQEEAIRALASALRRARVGLGGRTRVAASFLFVGQSGVGKT 491
Query: 524 RLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL------------- 569
+LA ++AE +FGS L DM + + HS L+G Y
Sbjct: 492 QLAKALAEVLFGSERALIRFDMSEFQE---PHSISKLIGAPPGYVGYEQGGRLTEAVRRQ 548
Query: 570 ---VVLVEDIDLADPQ----FIKILADGFETENFG------KVIFVLTKGDSSN 610
VVL+++I+ A P F+++L +G T+ G +VI ++T N
Sbjct: 549 PFSVVLLDEIEKAHPDVYNTFLQVLDEGRLTDGMGRTVDFRRVILIMTSNTGYN 602
>gi|42518421|ref|NP_964351.1| ATP-dependent Clp protease ATP-binding subunit clpA-like protein
[Lactobacillus johnsonii NCC 533]
gi|41582706|gb|AAS08317.1| ATP-dependent clp protease ATP-binding subunit clpA-like protein
[Lactobacillus johnsonii NCC 533]
Length = 822
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 27/146 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L +L E V Q ++I ++ + +S K FL G +GK LA ++A +
Sbjct: 510 LESILHERVIGQDEAISAVSRAIRRSRSGIKDENRPIGSFLFLGPTGVGKTELAKALAAA 569
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDI 576
VFGS + +DM + D +++ L+G+ Y E++ V+L++++
Sbjct: 570 VFGSERNIIRVDMSEYMDQIATSK--LIGSAPGYVGYEEGGQLSERVRRNPYSVILLDEV 627
Query: 577 DLADPQ----FIKILADGFETENFGK 598
+ A P +++L +GF T++ G+
Sbjct: 628 EKAHPDVFNLLLQVLDEGFLTDSKGR 653
>gi|320449888|ref|YP_004201984.1| chaperone protein ClpB 1 [Thermus scotoductus SA-01]
gi|320150057|gb|ADW21435.1| chaperone protein ClpB 1 [Thermus scotoductus SA-01]
Length = 742
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 37/174 (21%)
Query: 469 DSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKR 523
D KL R L + L++ V Q ++I ++ L + + A FL G +GK
Sbjct: 440 DDEKLMR--LEEELRKRVVGQEEAIRALASALRRARVGLGGRTRVAASFLFVGQSGVGKT 497
Query: 524 RLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL------------- 569
+LA ++AE +FGS L DM + + HS L+G Y
Sbjct: 498 QLAKALAEVLFGSERALIRFDMSEFQE---PHSVSKLIGAPPGYVGYEQGGRLTEAVRRQ 554
Query: 570 ---VVLVEDIDLADPQ----FIKILADGFETENFG------KVIFVLTKGDSSN 610
VVL+++I+ A P F+++L +G T+ G +VI ++T N
Sbjct: 555 PFSVVLLDEIEKAHPDIYNTFLQVLDEGRLTDGMGRTVDFRRVILIMTSNTGYN 608
>gi|221056062|ref|XP_002259169.1| heat shock protein 101 [Plasmodium knowlesi strain H]
gi|193809240|emb|CAQ39942.1| heat shock protein 101, putative [Plasmodium knowlesi strain H]
Length = 906
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 73 EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAP 132
E+I+ V E LR + + V+VG + +V + R+E+GDVP+EL+ VI +F
Sbjct: 214 EEIRAVIESLLRYNKNSPVLVGQPGTGKTTIVEGLVYRIEKGDVPKELRGYTVISLNFRK 273
Query: 133 VT 134
T
Sbjct: 274 FT 275
>gi|130893190|gb|ABO32597.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactobacillus
reuteri]
Length = 830
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L KVL + V Q +++ + + + +S K F+ G +GK LA ++A
Sbjct: 511 NLEKVLHQRVIGQDEAVTVVAKAIRRARSGLKDPSRPIGSFMFLGPTGVGKTELAKALAA 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 571 AMFGSEDNMIRIDMSEYMEKYSTSR--LIGAAPGYVGYDEGGQLTEKVRQHPYSVVLLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
+ A P +++L DG+ T+ G+ +
Sbjct: 629 AEKAHPDVFNLLLQVLDDGYLTDAKGRRV 657
>gi|85818996|gb|EAQ40155.1| ATP-dependent Clp protease [Dokdonia donghaensis MED134]
Length = 850
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 27/150 (18%)
Query: 476 SDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIA 530
++L ++ENV Q +++ + + + ++ K F+ G +GK +LA +A
Sbjct: 533 AELPATIKENVIGQDEAVAKVAKAIQRNRAGLKDPNKPIGSFIFLGQTGVGKTQLAKVLA 592
Query: 531 ESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVE 574
+ +F + D L IDM + + S L+G Y EK+ VVL++
Sbjct: 593 KELFDNQDALIRIDMSEYMEKFSISR--LVGAPPGYVGYEEGGQLTEKVRRKPYSVVLLD 650
Query: 575 DIDLADP----QFIKILADGFETENFGKVI 600
+I+ A P +++L DGF T++ G+ I
Sbjct: 651 EIEKAHPDVFNMLLQVLDDGFLTDSLGRKI 680
>gi|433447284|ref|ZP_20410881.1| Class III stress response-related ATPase, ClpC subunit
[Anoxybacillus flavithermus TNO-09.006]
gi|431999948|gb|ELK20855.1| Class III stress response-related ATPase, ClpC subunit
[Anoxybacillus flavithermus TNO-09.006]
Length = 810
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L ++L V Q +++ ++ + + ++ K F+ G +GK LA ++AE+
Sbjct: 502 LEEILHSRVIGQEEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAEA 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + IDM ++ + HS L+G+ Y EK+ V+L+++
Sbjct: 562 MFGDEDAMIRIDM---SEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVILLDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T++ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLEDGRLTDSKGRTV 647
>gi|423718349|ref|ZP_17692531.1| ATP-dependent Clp protease ATP-binding subunit clpA [Geobacillus
thermoglucosidans TNO-09.020]
gi|383365159|gb|EID42460.1| ATP-dependent Clp protease ATP-binding subunit clpA [Geobacillus
thermoglucosidans TNO-09.020]
Length = 810
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L ++L V Q +++ ++ + + ++ K F+ G +GK LA ++AE+
Sbjct: 502 LEEILHSRVVGQDEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAEA 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D L IDM ++ + HS L+G+ Y EK+ VVL+++
Sbjct: 562 MFGDEDALIRIDM---SEYMEKHSTSRLIGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T++ G+ +
Sbjct: 619 MEKAHPDVFNILLQVLEDGRLTDSKGRTV 647
>gi|282852642|ref|ZP_06261984.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
gasseri 224-1]
gi|282556384|gb|EFB62004.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
gasseri 224-1]
Length = 822
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 27/146 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L +L E V Q +I ++ + +S K FL G +GK LA ++A +
Sbjct: 510 LESILHERVIGQDKAISAVSRAIRRSRSGIKDENRPIGSFLFLGPTGVGKTELAKALAAA 569
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDI 576
VFGS + +DM + D V++ L+G+ Y E++ V+L++++
Sbjct: 570 VFGSERNIIRVDMSEYMDQVATSK--LIGSAPGYVGYEEGGQLSERVRRNPYSVILLDEV 627
Query: 577 DLADPQ----FIKILADGFETENFGK 598
+ A P +++L +GF T++ G+
Sbjct: 628 EKAHPDVFNLLLQVLDEGFLTDSKGR 653
>gi|398816815|ref|ZP_10575456.1| ATPase with chaperone activity, ATP-binding subunit [Brevibacillus
sp. BC25]
gi|398031954|gb|EJL25322.1| ATPase with chaperone activity, ATP-binding subunit [Brevibacillus
sp. BC25]
Length = 712
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/272 (19%), Positives = 121/272 (44%), Gaps = 53/272 (19%)
Query: 376 SCSYASTY---PWWPSQSSIFLD--SNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFN 430
S Y+ Y + P ++ +D + ++ SA+ +A+ +++ +T +
Sbjct: 298 SVEYSHRYIQDRFLPDKAIDLMDEVGSRLNLRSSAVDTAELHERLAQINQEKKEATEQEA 357
Query: 431 FGNCTR---KPQGVEPRLDSLKSNEGKEVKITLALGN-------------SELSDSAKLQ 474
+ R + G+ +LD + EGKE ++ + + + ++L +++
Sbjct: 358 YERAARLRDEEAGILEKLDQI---EGKEQRVQVDVTDIQALIEQKTGIPVTKLQSDEQMK 414
Query: 475 RSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKA-----TWFLLQGNDTIGKRRLALSI 529
+L L+ + Q +++ + + + ++ K FL G +GK L+ ++
Sbjct: 415 MKNLAAHLEAKIIGQSEAVTQVAKAIRRSRAGLKPKNRPIASFLFVGPTGVGKTELSKAL 474
Query: 530 AESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVL 572
AE +FG+ D + +DM ++ + HS L+G+ Y E++ ++L
Sbjct: 475 AEELFGTRDSMIRLDM---SEYMEKHSVSKLIGSPPGYVGHEEAGQLTERVRRNPYSIIL 531
Query: 573 VEDIDLADP----QFIKILADGFETENFGKVI 600
+++I+ A P F++IL DG T++ G+ +
Sbjct: 532 LDEIEKAHPDVMHMFLQILEDGRLTDSQGRTV 563
>gi|161522444|ref|YP_001585373.1| ATPase [Burkholderia multivorans ATCC 17616]
gi|189348680|ref|YP_001941876.1| ATP-dependent Clp protease ATP-binding subunit [Burkholderia
multivorans ATCC 17616]
gi|160345997|gb|ABX19081.1| ATPase AAA-2 domain protein [Burkholderia multivorans ATCC 17616]
gi|189338818|dbj|BAG47886.1| ATP-dependent Clp protease ATP-binding subunit [Burkholderia
multivorans ATCC 17616]
Length = 953
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 58/296 (19%), Positives = 121/296 (40%), Gaps = 61/296 (20%)
Query: 357 HTQSQFSSNLYNNQSLTGKSCSYASTY---PWWPSQSSIFLDSNS----ISFAESAMKPH 409
H Q FS + + + +A Y + P ++ +D + I +
Sbjct: 441 HHQVTFSDDAFVG------AAEFADRYITSRFLPDKAIDLIDQAAARVRIGATSRPVDIQ 494
Query: 410 NSSNSVAKFRRQQSCSTIEFNFGNCTR-------KPQGVEPRLDSLKSNEGKE------- 455
+A+ +R+Q +T F + K + ++ ++++ + G E
Sbjct: 495 EDEAQIAQLKREQDYATSRKRFDEAKQFEEQINAKQKALDEKMEAWQRKTGSETLEVTVE 554
Query: 456 --VKITLALGNSELSDSAKLQRSDLYKV---LQENVPWQFDSIHSIVEVLVECKSA---- 506
++ L +S+ + +R L K+ L+E V Q D++ ++ + + ++
Sbjct: 555 SVAEVVSRLTGIPVSELTQEERQKLLKMEEQLRERVVGQNDAVVAVSDAVRLSRAGLGQT 614
Query: 507 -KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLK 564
+ FL G +GK LA ++AESVFG + IDM ++ + H+ L+G
Sbjct: 615 HRPIATFLFLGPTGVGKTELAKALAESVFGDEQAIIRIDM---SEYMERHAVARLIGAPP 671
Query: 565 NY----------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
Y E++ V+L+++I+ A P +++ DG T+ G+V+
Sbjct: 672 GYVGYDEGGQLTERVRRRPYSVILLDEIEKAHPDVYNVLLQVFDDGRLTDGKGRVV 727
>gi|156098506|ref|XP_001615285.1| heat shock protein 101 [Plasmodium vivax Sal-1]
gi|148804159|gb|EDL45558.1| heat shock protein 101, putative [Plasmodium vivax]
Length = 905
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 73 EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAP 132
E+I+ V E LR + + V+VG + +V + R+E+GDVP+EL+ VI +F
Sbjct: 213 EEIRAVIESLLRYNKNSPVLVGQPGTGKTTIVEGLVYRIEKGDVPKELRGYTVISLNFRK 272
Query: 133 VT 134
T
Sbjct: 273 FT 274
>gi|432881393|ref|ZP_20097765.1| hypothetical protein A317_04049 [Escherichia coli KTE154]
gi|431412343|gb|ELG95428.1| hypothetical protein A317_04049 [Escherichia coli KTE154]
Length = 912
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 77/162 (47%), Gaps = 29/162 (17%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDT 519
S+L+ + + ++ ++LQ+ V Q ++ ++ + + ++ + FL G
Sbjct: 576 SDLTQEERKKLLNMEELLQKRVVGQDQAVAAVSDAVRLSRAGLGQAHRPVATFLFLGPTG 635
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EK 568
+GK LA +IAE+VFG + IDM ++ + H+ L+G Y EK
Sbjct: 636 VGKTELAKAIAEAVFGDEQAIIRIDM---SEYMEKHTVARLIGAPPGYVGYDEGGQLTEK 692
Query: 569 L------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
+ V+L+++I+ A P +++ DG T+ G+VI
Sbjct: 693 VRRRPYSVILLDEIEKAHPDVYNVLLQVFDDGRLTDGKGRVI 734
>gi|268318843|ref|YP_003292499.1| ATP-dependent Clp protease [Lactobacillus johnsonii FI9785]
gi|262397218|emb|CAX66232.1| ATP-dependent Clp protease [Lactobacillus johnsonii FI9785]
Length = 818
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 27/146 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L +L E V Q ++I ++ + +S K FL G +GK LA ++A +
Sbjct: 510 LESILHERVIGQDEAISAVSRAIRRSRSGIKDENRPIGSFLFLGPTGVGKTELAKALAAA 569
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDI 576
VFGS + +DM + D +++ L+G+ Y E++ V+L++++
Sbjct: 570 VFGSERNIIRVDMSEYMDQIATSK--LIGSAPGYVGYEEGGQLSERVRRNPYSVILLDEV 627
Query: 577 DLADPQ----FIKILADGFETENFGK 598
+ A P +++L +GF T++ G+
Sbjct: 628 EKAHPDVFNLLLQVLDEGFLTDSKGR 653
>gi|239825665|ref|YP_002948289.1| ATPase AAA [Geobacillus sp. WCH70]
gi|239805958|gb|ACS23023.1| ATPase AAA-2 domain protein [Geobacillus sp. WCH70]
Length = 811
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L ++L V Q +++ ++ + + ++ K F+ G +GK LA ++AE+
Sbjct: 503 LEEILHSRVVGQDEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAEA 562
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D L IDM ++ + HS L+G+ Y EK+ VVL+++
Sbjct: 563 MFGDEDALIRIDM---SEYMEKHSTSRLIGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDE 619
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T++ G+ +
Sbjct: 620 MEKAHPDVFNILLQVLEDGRLTDSKGRTV 648
>gi|119900192|ref|YP_935405.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpB
[Azoarcus sp. BH72]
gi|119672605|emb|CAL96519.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpB
[Azoarcus sp. BH72]
Length = 906
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 73 EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKF 128
E+I+ V ++ +R+++ N ++VG+ A+V F R+ RGDVP LK ++
Sbjct: 214 EEIRQVVDILMRRRQNNPILVGEAGVGKTAVVEGFAQRIARGDVPPALKDVSLLAL 269
>gi|871784|gb|AAA68910.1| Clp-like ATP-dependent protease binding subunit, partial [Bos
taurus]
Length = 586
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 19/108 (17%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND---------------GVSSHS 556
FL G +GK LA +A +FGST+ + +DM + D G +S
Sbjct: 442 FLFVGPTGVGKTELAKQLALDMFGSTNDIIRLDMSEYTDRTAVSKLIGTTAGYVGYDDNS 501
Query: 557 EMLMGTLKNYEKLVVLVEDIDLADPQFI----KILADGFETENFGKVI 600
L ++ + +VL+++I+ A+PQ I ++L DG T+ G +
Sbjct: 502 NTLTEKVRRHPYSIVLLDEIEKANPQVITLLLQVLDDGRLTDGQGNTV 549
>gi|389816088|ref|ZP_10207275.1| Class III stress response-related ATPase, ClpC [Planococcus
antarcticus DSM 14505]
gi|388465352|gb|EIM07670.1| Class III stress response-related ATPase, ClpC [Planococcus
antarcticus DSM 14505]
Length = 818
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L +L V Q +++ SI + + ++ K F+ G +GK LA ++AE
Sbjct: 501 NLEAILHNRVIGQDEAVTSISKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
S+FG D + IDM ++ + HS L+G+ Y EK+ V+L++
Sbjct: 561 SMFGDEDAMIRIDM---SEYMERHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVILLD 617
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P +++L DG T++ G+ +
Sbjct: 618 EIEKAHPDVFNILLQVLEDGRLTDSKGRRV 647
>gi|335997827|ref|ZP_08563740.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
ruminis SPM0211]
gi|335349709|gb|EGM51208.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
ruminis SPM0211]
Length = 699
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG D + +DM + +D + L+GT Y
Sbjct: 446 FLFVGPTGVGKTELAKQLALDMFGKKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 503
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 504 NNNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTI 553
>gi|238853491|ref|ZP_04643869.1| negative regulator of genetic competence ClpC/mecB [Lactobacillus
gasseri 202-4]
gi|238833931|gb|EEQ26190.1| negative regulator of genetic competence ClpC/mecB [Lactobacillus
gasseri 202-4]
Length = 822
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 27/146 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L +L E V Q +I ++ + +S K FL G +GK LA ++A +
Sbjct: 510 LESILHERVIGQDKAISAVSRAIRRSRSGIKDENRPIGSFLFLGPTGVGKTELAKALAAA 569
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDI 576
VFGS + +DM + D V++ L+G+ Y E++ V+L++++
Sbjct: 570 VFGSERNIIRVDMSEYMDQVATSK--LIGSAPGYVGYEEGGQLSERVRRNPYSVILLDEV 627
Query: 577 DLADPQ----FIKILADGFETENFGK 598
+ A P +++L +GF T++ G+
Sbjct: 628 EKAHPDVFNLLLQVLDEGFLTDSKGR 653
>gi|417987778|ref|ZP_12628332.1| Clp protease ATP-binding subunit [Lactobacillus casei 32G]
gi|410522600|gb|EKP97544.1| Clp protease ATP-binding subunit [Lactobacillus casei 32G]
Length = 294
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 22/109 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
F+ G +GK LA ++AE++FGS D + +DM + + S+ L+G Y
Sbjct: 11 FMFLGPTGVGKTELAKALAEAMFGSEDAMIRVDMSEYMEKFSTSR--LIGAAPGYVGYDE 68
Query: 567 -----EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ VVL+++++ A P +++L DG+ T++ G+ +
Sbjct: 69 GGQLTEKVRNKPYSVVLLDEVEKAHPDVFNILLQVLDDGYLTDSKGRRV 117
>gi|315037522|ref|YP_004031090.1| ATPase [Lactobacillus amylovorus GRL 1112]
gi|312275655|gb|ADQ58295.1| ATPase [Lactobacillus amylovorus GRL 1112]
Length = 832
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 73/152 (48%), Gaps = 27/152 (17%)
Query: 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALS 528
Q ++L +L + V Q ++ ++ + +S K FL G +GK LA S
Sbjct: 512 QLANLESLLHKRVIGQDKAVSAVARAIRRSRSGIKDEHRPIGSFLFLGPTGVGKTELAKS 571
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVL 572
+A ++F S D + +DM + D ++S L+G+ Y E++ VVL
Sbjct: 572 VAAAMFDSEDNMIRLDMSEYMDQIASSK--LIGSAPGYVGYEEGGQLSEQVRRHPYSVVL 629
Query: 573 VEDIDLADPQ----FIKILADGFETENFGKVI 600
+++++ A P +++L +GF T++ G+ +
Sbjct: 630 LDEVEKAHPDVFNLLLQVLDEGFLTDSKGRKV 661
>gi|289768009|ref|ZP_06527387.1| Clp protease ATP binding subunit [Streptomyces lividans TK24]
gi|289698208|gb|EFD65637.1| Clp protease ATP binding subunit [Streptomyces lividans TK24]
Length = 842
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 67/142 (47%), Gaps = 23/142 (16%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
L E V Q +++ + + ++ ++ + FL G +GK LA ++AE++FGS
Sbjct: 534 LHERVVGQDEAVRVVSDAVLRSRAGLSSADRPIGSFLFLGPTGVGKTELARALAEALFGS 593
Query: 537 TDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADPQ 582
D + +DM + + G H E L ++ + ++L+++++ A P
Sbjct: 594 EDRMVRLDMSEYQERHTVSRLVGAPPGYVGHEEAGQLTEVVRRHPYSLLLLDEVEKAHPD 653
Query: 583 ----FIKILADGFETENFGKVI 600
+++L DG T++ G+ +
Sbjct: 654 VFNILLQVLDDGRLTDSQGRTV 675
>gi|389583709|dbj|GAB66443.1| heat shock protein 101 [Plasmodium cynomolgi strain B]
Length = 907
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 73 EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAP 132
E+I+ V E LR + + V+VG + +V + R+E+GDVP+EL+ VI +F
Sbjct: 215 EEIRAVIESLLRYNKNSPVLVGQPGTGKTTIVEGLVYRIEKGDVPKELRGYTVISLNFRK 274
Query: 133 VT 134
T
Sbjct: 275 FT 276
>gi|325916769|ref|ZP_08179023.1| Type VI secretion ATPase, ClpV1 family [Xanthomonas vesicatoria
ATCC 35937]
gi|325537023|gb|EGD08765.1| Type VI secretion ATPase, ClpV1 family [Xanthomonas vesicatoria
ATCC 35937]
Length = 924
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 14/132 (10%)
Query: 6 FSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHAL---- 61
+ H + A S S G FS + + EA I P + AL
Sbjct: 141 LKPAVLNEHFAEIVAGSPEDGLLPSDG--FSLGQTAAPGEASGAIAPAALGKQEALKKFT 198
Query: 62 --FSSQK------PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVER 113
++Q P ++I+ V ++ +R+++ N ++VG+ A+V F R+ R
Sbjct: 199 TDLTAQAREGKLDPIIGRDDEIRQVVDILMRRRQNNPILVGEAGVGKTAVVEGFAQRIAR 258
Query: 114 GDVPQELKQTHV 125
GDVP LK +
Sbjct: 259 GDVPPALKDVQL 270
>gi|227888861|ref|ZP_04006666.1| ATP-binding Clp protease subunit [Lactobacillus johnsonii ATCC
33200]
gi|227850698|gb|EEJ60784.1| ATP-binding Clp protease subunit [Lactobacillus johnsonii ATCC
33200]
Length = 828
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 27/146 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L +L E V Q ++I ++ + +S K FL G +GK LA ++A +
Sbjct: 520 LESILHERVIGQDEAISAVSRAIRRSRSGIKDENRPIGSFLFLGPTGVGKTELAKALAAA 579
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDI 576
VFGS + +DM + D +++ L+G+ Y E++ V+L++++
Sbjct: 580 VFGSERNIIRVDMSEYMDQIATSK--LIGSAPGYVGYEEGGQLSERVRRNPYSVILLDEV 637
Query: 577 DLADPQ----FIKILADGFETENFGK 598
+ A P +++L +GF T++ G+
Sbjct: 638 EKAHPDVFNLLLQVLDEGFLTDSKGR 663
>gi|167763106|ref|ZP_02435233.1| hypothetical protein BACSTE_01475 [Bacteroides stercoris ATCC
43183]
gi|167699446|gb|EDS16025.1| ATPase family associated with various cellular activities (AAA)
[Bacteroides stercoris ATCC 43183]
Length = 842
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 74/159 (46%), Gaps = 27/159 (16%)
Query: 467 LSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIG 521
++ + L+ + + + LQ V Q +I + + ++ + K F+ G +G
Sbjct: 524 MAQAESLKLAGMKEDLQAKVVAQDAAIEKLTKAILRSRVGLKDPNRPIGTFMFLGPTGVG 583
Query: 522 KRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL-- 569
K LA +A+ +FGS+D L IDM + + + ++G Y EK+
Sbjct: 584 KTHLAKQLAKYMFGSSDALIRIDMSEYMEKYTVSR--MIGAAPGYVGYEEGGQLTEKVRR 641
Query: 570 ----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
+VL+++I+ A P +++L +G T+N+G+ I
Sbjct: 642 KPYSIVLLDEIEKAHPDVFNILLQVLDEGRLTDNYGRTI 680
>gi|21224716|ref|NP_630495.1| Clp protease ATP binding subunit [Streptomyces coelicolor A3(2)]
gi|3218360|emb|CAA19619.1| clp protease ATP binding subunit [Streptomyces coelicolor A3(2)]
Length = 842
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 67/142 (47%), Gaps = 23/142 (16%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
L E V Q +++ + + ++ ++ + FL G +GK LA ++AE++FGS
Sbjct: 534 LHERVVGQDEAVRVVSDAVLRSRAGLSSADRPIGSFLFLGPTGVGKTELARALAEALFGS 593
Query: 537 TDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADPQ 582
D + +DM + + G H E L ++ + ++L+++++ A P
Sbjct: 594 EDRMVRLDMSEYQERHTVSRLVGAPPGYVGHEEAGQLTEVVRRHPYSLLLLDEVEKAHPD 653
Query: 583 ----FIKILADGFETENFGKVI 600
+++L DG T++ G+ +
Sbjct: 654 VFNILLQVLDDGRLTDSQGRTV 675
>gi|387928140|ref|ZP_10130818.1| Class III stress response-related ATPase, ClpC [Bacillus
methanolicus PB1]
gi|387587726|gb|EIJ80048.1| Class III stress response-related ATPase, ClpC [Bacillus
methanolicus PB1]
Length = 814
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L ++L V Q +++ +I + + ++ K F+ G +GK LA ++AE+
Sbjct: 502 LEEILHSRVIGQEEAVKAISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAEA 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + IDM ++ + HS L+G+ Y EK+ V+L+++
Sbjct: 562 MFGDEDAMIRIDM---SEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVILLDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T++ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLEDGRLTDSKGRTV 647
>gi|419858273|ref|ZP_14380949.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni DSM 20252 = AWRIB129]
gi|410499023|gb|EKP90463.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni DSM 20252 = AWRIB129]
Length = 822
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 33/178 (18%)
Query: 454 KEVKITLALGNSELSDSAKLQRSD------LYKVLQENVPWQFDSIHSIVEVLVECKSAK 507
+E IT +G +LQ+S+ L ++L V Q ++I ++ + +S
Sbjct: 480 REKDITDVVGQQTGIPVTQLQKSESERLLHLEEILHRRVVGQNEAISAVSRAIRRARSGI 539
Query: 508 K-----ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGT 562
K FL G +GK LA ++AE++F S D + +DM + + S+ L+G+
Sbjct: 540 KDPSRPIGTFLFLGPTGVGKTELAKALAEAMFDSEDNMIRVDMSEYQESYSASR--LIGS 597
Query: 563 ----------------LKNYEKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++N+ VVL+++ + A P +++ DG+ T++ G+ +
Sbjct: 598 APGYVGYDEGGQLTERVRNHPYSVVLLDEAEKAHPDIFNLLLQVFDDGYMTDSKGRKV 655
>gi|403714711|ref|ZP_10940596.1| chaperone ClpB [Kineosphaera limosa NBRC 100340]
gi|403211238|dbj|GAB95279.1| chaperone ClpB [Kineosphaera limosa NBRC 100340]
Length = 877
Score = 42.4 bits (98), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 25/156 (16%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGK 522
+ AKL R D ++L E V Q +++ + + ++ +S K FL G +GK
Sbjct: 563 GERAKLLRLD--EILHERVVGQDEAVQLVADAIIRARSGVKDPRRPIGSFLFLGPTGVGK 620
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEK 568
LA ++A+++F S D + IDM + + G + E L ++
Sbjct: 621 TELAKTLAQALFDSGDNVVRIDMSEYQERHTVSRLIGAPPGYVGYEEGGQLTEAVRRKPY 680
Query: 569 LVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
VVL ++I+ A P +++L DG T++ G+ +
Sbjct: 681 SVVLFDEIEKAHPDVFNTLLQVLDDGRLTDSQGRTV 716
>gi|455647248|gb|EMF26230.1| Clp protease ATP binding subunit [Streptomyces gancidicus BKS
13-15]
Length = 844
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 75/159 (47%), Gaps = 23/159 (14%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDT 519
S L++ K + L + L + V Q +++ + + ++ ++ + FL G
Sbjct: 519 SRLTEEEKDRLLGLEQHLHQRVVGQEEAVRVVSDAVLRSRAGLSSPDRPIGSFLFLGPTG 578
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKN 565
+GK LA ++AE++FGS D + +DM + + G H E L ++
Sbjct: 579 VGKTELARALAEALFGSEDRMVRLDMSEYQERHTVSRLVGAPPGYVGHEEAGQLTEVVRR 638
Query: 566 YEKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
+ ++L+++++ A P +++L DG T++ G+ +
Sbjct: 639 HPYSLLLLDEVEKAHPDVFNILLQVLDDGRLTDSQGRTV 677
>gi|154503279|ref|ZP_02040339.1| hypothetical protein RUMGNA_01103 [Ruminococcus gnavus ATCC 29149]
gi|336432911|ref|ZP_08612741.1| hypothetical protein HMPREF0991_01860 [Lachnospiraceae bacterium
2_1_58FAA]
gi|153796273|gb|EDN78693.1| ATPase family associated with various cellular activities (AAA)
[Ruminococcus gnavus ATCC 29149]
gi|336017581|gb|EGN47339.1| hypothetical protein HMPREF0991_01860 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 813
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 25/156 (16%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVL----VECKSAKKATW-FLLQGNDTIGK 522
+D+ +LQ+ L + L + V Q +++ ++ + V KS + FL G +GK
Sbjct: 496 TDAHRLQK--LEETLHKRVIGQEEAVSAVTRAVKRGRVGLKSPNRPIGSFLFLGPTGVGK 553
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEK 568
L+ ++AE++FG D + +DM + + G H E L ++ +
Sbjct: 554 TELSKALAEALFGREDSMIRVDMSEYMEKHSVAKMIGSPPGYVGHDEGGQLSDKVRTHPY 613
Query: 569 LVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
V+L ++I+ A P +++L DG T++ G+V+
Sbjct: 614 SVILFDEIEKAHPDVFNILLQVLDDGRITDSQGRVV 649
>gi|406838840|ref|ZP_11098434.1| ATP-dependent clp protease ATP-binding subunit [Lactobacillus vini
DSM 20605]
Length = 727
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 31/172 (18%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVEC-----KSAKKA 509
E K ++ +G EL + Q L L+++V Q ++ I + KS +
Sbjct: 404 EEKTSIPVG--ELKRKEQQQLKSLADSLKQHVIGQDQAVDKIARAIRRNRIGFNKSGRPI 461
Query: 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY-- 566
FL G +GK A +A+ +FG+TD + DM ++ + HS L+G+ Y
Sbjct: 462 GSFLFVGPTGVGKTETAKQLAQELFGTTDAMIRFDM---SEYMEKHSVSKLIGSPPGYVG 518
Query: 567 --------EKL------VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
EK+ ++L+++I+ A P F++IL DG T++ G+ +
Sbjct: 519 YEEAGQLTEKVRRHPYSLILLDEIEKAHPDVMHMFLQILDDGRLTDSQGRTV 570
>gi|421189468|ref|ZP_15646783.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB422]
gi|421192238|ref|ZP_15649506.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB548]
gi|399969763|gb|EJO04083.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB548]
gi|399972991|gb|EJO07178.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB422]
Length = 823
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 33/178 (18%)
Query: 454 KEVKITLALGNSELSDSAKLQRSD------LYKVLQENVPWQFDSIHSIVEVLVECKSAK 507
+E IT +G +LQ+S+ L ++L V Q ++I ++ + +S
Sbjct: 481 REKDITDVVGQQTGIPVTQLQKSESERLLHLEEILHRRVVGQNEAISAVSRAIRRARSGI 540
Query: 508 K-----ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGT 562
K FL G +GK LA ++AE++F S D + +DM + + S+ L+G+
Sbjct: 541 KDPSRPIGTFLFLGPTGVGKTELAKALAEAMFDSEDNMIRVDMSEYQESYSASR--LIGS 598
Query: 563 ----------------LKNYEKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++N+ VVL+++ + A P +++ DG+ T++ G+ +
Sbjct: 599 APGYVGYDEGGQLTERVRNHPYSVVLLDEAEKAHPDIFNLLLQVFDDGYMTDSKGRKV 656
>gi|269836474|ref|YP_003318702.1| ATP-dependent chaperone ClpB [Sphaerobacter thermophilus DSM 20745]
gi|269785737|gb|ACZ37880.1| ATP-dependent chaperone ClpB [Sphaerobacter thermophilus DSM 20745]
Length = 870
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P E+I+ V +V R+ + N V++G+ A+V R+ RGDVP+ LK ++
Sbjct: 180 PVIGRDEEIRRVIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVRGDVPEGLKDKRIV 239
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
+ A + + E E LK ++ + G I++ +L V
Sbjct: 240 QLDLAAMLAGAKYRGEFE---ERLKATLNEIQEAEGQIIVFIDELHTVV 285
>gi|221211794|ref|ZP_03584772.1| negative regulator of genetic competence ClpC/mecB [Burkholderia
multivorans CGD1]
gi|221167879|gb|EEE00348.1| negative regulator of genetic competence ClpC/mecB [Burkholderia
multivorans CGD1]
Length = 956
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 102/231 (44%), Gaps = 48/231 (20%)
Query: 415 VAKFRRQQSCSTIEFNFGNCTR-------KPQGVEPRLDSLKSNEGKE---------VKI 458
+A+ +R+Q +T F + K + ++ ++++ + G E ++
Sbjct: 500 IAQLKREQDYATSRKRFDEAKQFEEQINAKQKALDEKMEAWQRKTGSETLEVTVESVAEV 559
Query: 459 TLALGNSELSDSAKLQRSDLYKV---LQENVPWQFDSIHSIVEVLVECKSA-----KKAT 510
L +S+ + +R L K+ L+E V Q D++ ++ + + ++ +
Sbjct: 560 VSRLTGIPVSELTQEERQKLLKMEEQLRERVVGQNDAVVAVSDAVRLSRAGLGQTHRPIA 619
Query: 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY--- 566
FL G +GK LA ++AESVFG + IDM ++ + H+ L+G Y
Sbjct: 620 TFLFLGPTGVGKTELAKALAESVFGDEQAIIRIDM---SEYMERHAVARLIGAPPGYVGY 676
Query: 567 -------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
E++ V+L+++I+ A P +++ DG T+ G+V+
Sbjct: 677 DEGGQLTERVRRRPYSVILLDEIEKAHPDVYNVLLQVFDDGRLTDGKGRVV 727
>gi|189218123|ref|YP_001938765.1| ATP-binding subunits of Clp protease ClpB [Methylacidiphilum
infernorum V4]
gi|189184981|gb|ACD82166.1| ATP-binding subunits of Clp protease ClpB [Methylacidiphilum
infernorum V4]
Length = 869
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 81/179 (45%), Gaps = 35/179 (19%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDT 519
S L + K + L ++L + V Q +++ ++ + ++ +S K F+ G
Sbjct: 555 SRLLEGEKEKLLKLDQILHKRVVGQDEAVQAVTDAILRARSGLKDPKRPIGSFIFLGPTG 614
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL--------- 569
+GK LA S+AE++F S + + +DM ++ + H+ L+G Y
Sbjct: 615 VGKTELARSLAEALFDSEENMIRLDM---SEYMEKHTVARLIGAPPGYVGFEEGGQLTEA 671
Query: 570 -------VVLVEDIDLADPQ----FIKILADGFETENFGK------VIFVLTKGDSSNY 611
V+L+++I+ A P+ F++IL DG T+ G+ I ++T S Y
Sbjct: 672 VRRKPYSVLLLDEIEKAHPEVFNLFLQILEDGRLTDGHGRTVDFRNTIIIMTSNIGSVY 730
>gi|290889986|ref|ZP_06553071.1| hypothetical protein AWRIB429_0461 [Oenococcus oeni AWRIB429]
gi|419757704|ref|ZP_14284033.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB304]
gi|419857090|ref|ZP_14379803.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB202]
gi|421184253|ref|ZP_15641678.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB318]
gi|421187578|ref|ZP_15644931.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB419]
gi|421192522|ref|ZP_15649776.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB553]
gi|421194703|ref|ZP_15651920.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB568]
gi|421196699|ref|ZP_15653881.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB576]
gi|290480333|gb|EFD88972.1| hypothetical protein AWRIB429_0461 [Oenococcus oeni AWRIB429]
gi|399905564|gb|EJN93003.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB304]
gi|399967689|gb|EJO02157.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB318]
gi|399968051|gb|EJO02507.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB419]
gi|399974524|gb|EJO08675.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB553]
gi|399976524|gb|EJO10544.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB576]
gi|399977251|gb|EJO11237.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB568]
gi|410498435|gb|EKP89886.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB202]
Length = 823
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 33/178 (18%)
Query: 454 KEVKITLALGNSELSDSAKLQRSD------LYKVLQENVPWQFDSIHSIVEVLVECKSAK 507
+E IT +G +LQ+S+ L ++L V Q ++I ++ + +S
Sbjct: 481 REKDITDVVGQQTGIPVTQLQKSESERLLHLEEILHRRVVGQNEAISAVSRAIRRARSGI 540
Query: 508 K-----ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGT 562
K FL G +GK LA ++AE++F S D + +DM + + S+ L+G+
Sbjct: 541 KDPSRPIGTFLFLGPTGVGKTELAKALAEAMFDSEDNMIRVDMSEYQESYSASR--LIGS 598
Query: 563 ----------------LKNYEKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++N+ VVL+++ + A P +++ DG+ T++ G+ +
Sbjct: 599 APGYVGYDEGGQLTERVRNHPYSVVLLDEAEKAHPDIFNLLLQVFDDGYMTDSKGRKV 656
>gi|46198482|ref|YP_004149.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Thermus
thermophilus HB27]
gi|55980511|ref|YP_143808.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Thermus
thermophilus HB8]
gi|46196104|gb|AAS80522.1| ATP-dependent clp protease ATP-binding subunit clpA [Thermus
thermophilus HB27]
gi|55771924|dbj|BAD70365.1| ATP-dependent Clp protease, ATP-binding subunit (ClpA) [Thermus
thermophilus HB8]
Length = 736
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 37/174 (21%)
Query: 469 DSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKR 523
D KL R L + L++ V Q ++I ++ L + + A FL G +GK
Sbjct: 434 DDEKLMR--LEEELRKRVVGQEEAIRALANALRRARVGLGGRTRVAASFLFVGQSGVGKT 491
Query: 524 RLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL------------- 569
+LA ++AE +FGS L DM + + HS L+G Y
Sbjct: 492 QLAKALAEVLFGSERALIRFDMSEFQE---PHSISKLIGAPPGYVGYEQGGRLTEAVRRQ 548
Query: 570 ---VVLVEDIDLADPQ----FIKILADGFETENFG------KVIFVLTKGDSSN 610
VVL+++I+ A P F+++L +G T+ G +VI ++T N
Sbjct: 549 PFSVVLLDEIEKAHPDIYNTFLQVLDEGRLTDGMGRTVDFRRVILIMTSNTGYN 602
>gi|403235214|ref|ZP_10913800.1| ATPase AAA [Bacillus sp. 10403023]
Length = 711
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 30/208 (14%)
Query: 416 AKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGKEVKITLALGNSELSDSAKLQR 475
AK R Q+ +E N K + V +D + E K + +G + ++ K++
Sbjct: 360 AKLRHQEIL--LEKQLNNPETKEEHV---IDVANIQQIIEKKTGIPVGKLQENEQQKMKH 414
Query: 476 SDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIA 530
L + L + V Q +++ + + + ++ KA FL G +GK L ++A
Sbjct: 415 --LAENLAKKVIGQEEAVTKVAKAVRRSRAGLKAKTRPIGSFLFVGPTGVGKTELTKTLA 472
Query: 531 ESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDI 576
E +FGS D + +DM + + G H E L ++ ++L+++I
Sbjct: 473 EELFGSKDAMIRLDMSEYMEKHSVSKIIGSPPGYVGHEEAGQLTEKVRRNPYSIILLDEI 532
Query: 577 DLADP----QFIKILADGFETENFGKVI 600
+ A P F++IL DG T++ G+ +
Sbjct: 533 EKAHPDVQHMFLQILEDGRLTDSQGRTV 560
>gi|420147739|ref|ZP_14655014.1| ATP-dependent proteinase [Lactobacillus gasseri CECT 5714]
gi|398400886|gb|EJN54417.1| ATP-dependent proteinase [Lactobacillus gasseri CECT 5714]
Length = 656
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 27/146 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L +L E V Q +I ++ + +S K FL G +GK LA ++A +
Sbjct: 344 LESILHERVIGQDKAISAVSRAIRRSRSGIKDENRPIGSFLFLGPTGVGKTELAKALAAA 403
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDI 576
VFGS + +DM + D V++ L+G+ Y E++ V+L++++
Sbjct: 404 VFGSERNIIRVDMSEYMDQVATSK--LIGSAPGYVGYEEGGQLSERVRRNPYSVILLDEV 461
Query: 577 DLADPQ----FIKILADGFETENFGK 598
+ A P +++L +GF T++ G+
Sbjct: 462 EKAHPDVFNLLLQVLDEGFLTDSKGR 487
>gi|449016715|dbj|BAM80117.1| heat shock protein ClpB [Cyanidioschyzon merolae strain 10D]
Length = 948
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 25/156 (16%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
S+S KL L + L + V Q D++ ++ E + ++ + F+ G +GK
Sbjct: 632 SESEKLM--SLERDLSKRVVGQRDAVRAVSEAIQRSRAGLADPRRPIASFMFLGPTGVGK 689
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEK 568
LA S+AE +F S D L IDM + + G + E L ++
Sbjct: 690 TELAKSLAERLFDSEDALIRIDMSEYMEKFSVSRLIGAPPGYVGYEEAGQLTEAVRRRPY 749
Query: 569 LVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
VVL+++I+ A P +++L DG T++ G+ +
Sbjct: 750 SVVLLDEIEKAHPDVFNVLLQVLDDGRLTDSQGRTV 785
>gi|406661369|ref|ZP_11069489.1| Negative regulator of genetic competence ClpC/MecB [Cecembia
lonarensis LW9]
gi|405554766|gb|EKB49838.1| Negative regulator of genetic competence ClpC/MecB [Cecembia
lonarensis LW9]
Length = 844
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 99/231 (42%), Gaps = 54/231 (23%)
Query: 482 LQENVPWQFDSIHSIVEVL----VECKSAKKATW-FLLQGNDTIGKRRLALSIAESVFGS 536
LQ V Q ++I +V+ + V K KK F+ G +GK LA +A +F
Sbjct: 534 LQAKVIGQDEAIKKLVKAIQRTRVGLKDPKKPIGSFIFLGPTGVGKTELAKMLASYLFDK 593
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
D L IDM + + S L+G Y EK+ VVL+++I+ A
Sbjct: 594 EDSLVRIDMSEYMEKFSVSR--LVGAPPGYVGYEEGGQLTEKVRRKPYSVVLLDEIEKAH 651
Query: 581 PQ----FIKILADGFETENFGKVIFVLTKGDSSNYEERIENQDSVINMTLKVNERN-QNF 635
P +++L DG T+ G+ R++ ++++I MT + R+ ++F
Sbjct: 652 PDVFNILLQVLDDGILTDGLGR---------------RVDFRNTIIIMTSNIGVRDLKDF 696
Query: 636 DHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLD 686
A FA+K+K +DE V + S KK FS + N LD
Sbjct: 697 G----AGIGFASKSKQQSMDE------VMKSTIQSALKKAFSPE-FLNRLD 736
>gi|346726873|ref|YP_004853542.1| ClpB protein [Xanthomonas axonopodis pv. citrumelo F1]
gi|346651620|gb|AEO44244.1| ClpB protein [Xanthomonas axonopodis pv. citrumelo F1]
Length = 920
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 12/103 (11%)
Query: 35 FSSPCSPSSSEAHHFINPNTFWQNHAL------FSSQK------PASVSKEDIKLVFEVF 82
FS + + EA I P + AL ++Q P ++I+ V ++
Sbjct: 168 FSLGQTAAPGEASGAIAPAALGKQEALKKFTTDLTAQAREGKLDPIIGRDDEIRQVVDIL 227
Query: 83 LRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHV 125
+R+++ N ++VG+ A+V F R+ RGDVP LK +
Sbjct: 228 MRRRQNNPILVGEAGVGKTAVVEGFAQRIARGDVPPALKDVQL 270
>gi|218190920|gb|EEC73347.1| hypothetical protein OsI_07555 [Oryza sativa Indica Group]
Length = 683
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 16/76 (21%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSA----------------KKATWFLLQGNDTIG 521
L L++ VPWQ + I ++ C+S K+ TW L G D G
Sbjct: 399 LCGALEKEVPWQKVIVPEIASTVLRCRSGMAAPAMARRSSSCSSSKEHTWMLFLGGDADG 458
Query: 522 KRRLALSIAESVFGST 537
K R+A +A VFGS+
Sbjct: 459 KLRVARELASLVFGSS 474
Score = 40.0 bits (92), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 225 ASYQTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSL 260
+YQT ++C+ P LE W L +++P+G L LSL
Sbjct: 136 GTYQTNIRCRTGHPSLETLWGLHTLAVPAGSLALSL 171
>gi|78032595|emb|CAI65391.1| ATP-dependent Clp protease, ATP binding subunit ClpC [Oenococcus
oeni]
Length = 823
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 33/178 (18%)
Query: 454 KEVKITLALGNSELSDSAKLQRSD------LYKVLQENVPWQFDSIHSIVEVLVECKSAK 507
+E IT +G +LQ+S+ L ++L V Q ++I ++ + +S
Sbjct: 481 REKDITDVVGQQTGIPVTQLQKSESERLLHLEEILHRRVVGQNEAISAVSRAIRRARSGI 540
Query: 508 K-----ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGT 562
K FL G +GK LA ++AE++F S D + +DM + + S+ L+G+
Sbjct: 541 KDPSRPIGTFLFLGPTGVGKTELAKALAEAMFDSEDNMIRVDMSEYQESYSASR--LIGS 598
Query: 563 ----------------LKNYEKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++N+ VVL+++ + A P +++ DG+ T++ G+ +
Sbjct: 599 APGYVGYDEGGQLTERVRNHPYSVVLLDEAEKAHPDIFNLLLQVFDDGYMTDSKGRKV 656
>gi|421186949|ref|ZP_15644330.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB418]
gi|399965199|gb|EJN99825.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni AWRIB418]
Length = 823
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 33/178 (18%)
Query: 454 KEVKITLALGNSELSDSAKLQRSD------LYKVLQENVPWQFDSIHSIVEVLVECKSAK 507
+E IT +G +LQ+S+ L ++L V Q ++I ++ + +S
Sbjct: 481 REKDITDVVGQQTGIPVTQLQKSESERLLHLEEILHRRVVGQNEAISAVSRAIRRARSGI 540
Query: 508 K-----ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGT 562
K FL G +GK LA ++AE++F S D + +DM + + S+ L+G+
Sbjct: 541 KDPSRPIGTFLFLGPTGVGKTELAKALAEAMFDSEDNMIRVDMSEYQESYSASR--LIGS 598
Query: 563 ----------------LKNYEKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++N+ VVL+++ + A P +++ DG+ T++ G+ +
Sbjct: 599 APGYVGYDEGGQLTERVRNHPYSVVLLDEAEKAHPDIFNLLLQVFDDGYMTDSKGRKV 656
>gi|383782938|ref|YP_005467505.1| putative ATPase associated with various cellular activities
[Actinoplanes missouriensis 431]
gi|381376171|dbj|BAL92989.1| putative ATPase associated with various cellular activities
[Actinoplanes missouriensis 431]
Length = 840
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 27/144 (18%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAESVFGS 536
L + V Q D++ ++ + + ++ K + F+ G +GK L+ ++AE +FGS
Sbjct: 511 LHKRVIGQEDAVQAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALAEFLFGS 570
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
D L +DM + +D + L+G Y EK+ VVL ++I+ A
Sbjct: 571 EDALIQLDMSEFHDRYTVSR--LVGAPPGYVGYDEGGQLTEKVRRKPFSVVLFDEIEKAH 628
Query: 581 PQ----FIKILADGFETENFGKVI 600
P ++IL DG T+ G+++
Sbjct: 629 PDVFNTLLQILEDGRLTDGQGRIV 652
>gi|325955994|ref|YP_004286604.1| ATPase [Lactobacillus acidophilus 30SC]
gi|385816880|ref|YP_005853270.1| ATPase [Lactobacillus amylovorus GRL1118]
gi|325332559|gb|ADZ06467.1| ATPase [Lactobacillus acidophilus 30SC]
gi|327182818|gb|AEA31265.1| ATPase [Lactobacillus amylovorus GRL1118]
Length = 829
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 73/152 (48%), Gaps = 27/152 (17%)
Query: 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALS 528
Q ++L +L + V Q ++ ++ + +S K FL G +GK LA S
Sbjct: 512 QLANLESLLHKRVIGQDKAVSAVARAIRRSRSGIKDEHRPIGSFLFLGPTGVGKTELAKS 571
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVL 572
+A ++F S D + +DM + D ++S L+G+ Y E++ VVL
Sbjct: 572 VAAAMFDSEDNMIRLDMSEYMDQIASSK--LIGSAPGYVGYEEGGQLSEQVRRHPYSVVL 629
Query: 573 VEDIDLADPQ----FIKILADGFETENFGKVI 600
+++++ A P +++L +GF T++ G+ +
Sbjct: 630 LDEVEKAHPDVFNLLLQVLDEGFLTDSKGRKV 661
>gi|312109233|ref|YP_003987549.1| ATPase AAA [Geobacillus sp. Y4.1MC1]
gi|336233627|ref|YP_004586243.1| ATPase AAA-2 domain-containing protein [Geobacillus
thermoglucosidasius C56-YS93]
gi|311214334|gb|ADP72938.1| ATPase AAA-2 domain protein [Geobacillus sp. Y4.1MC1]
gi|335360482|gb|AEH46162.1| ATPase AAA-2 domain protein [Geobacillus thermoglucosidasius
C56-YS93]
Length = 812
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L ++L V Q +++ ++ + + ++ K F+ G +GK LA ++AE+
Sbjct: 504 LEEILHSRVVGQDEAVKAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAEA 563
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D L IDM ++ + HS L+G+ Y EK+ VVL+++
Sbjct: 564 MFGDEDALIRIDM---SEYMEKHSTSRLIGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDE 620
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
++ A P +++L DG T++ G+ +
Sbjct: 621 MEKAHPDVFNILLQVLEDGRLTDSKGRTV 649
>gi|118586817|ref|ZP_01544252.1| stress response-related ATPase, class III [Oenococcus oeni ATCC
BAA-1163]
gi|118432737|gb|EAV39468.1| stress response-related ATPase, class III [Oenococcus oeni ATCC
BAA-1163]
Length = 829
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 33/178 (18%)
Query: 454 KEVKITLALGNSELSDSAKLQRSD------LYKVLQENVPWQFDSIHSIVEVLVECKSAK 507
+E IT +G +LQ+S+ L ++L V Q ++I ++ + +S
Sbjct: 487 REKDITDVVGQQTGIPVTQLQKSESERLLHLEEILHRRVVGQNEAISAVSRAIRRARSGI 546
Query: 508 K-----ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGT 562
K FL G +GK LA ++AE++F S D + +DM + + S+ L+G+
Sbjct: 547 KDPSRPIGTFLFLGPTGVGKTELAKALAEAMFDSEDNMIRVDMSEYQESYSASR--LIGS 604
Query: 563 ----------------LKNYEKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++N+ VVL+++ + A P +++ DG+ T++ G+ +
Sbjct: 605 APGYVGYDEGGQLTERVRNHPYSVVLLDEAEKAHPDIFNLLLQVFDDGYMTDSKGRKV 662
>gi|339449314|ref|ZP_08652870.1| ATPase AAA-2 domain-containing protein [Lactobacillus fructivorans
KCTC 3543]
Length = 671
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 27/161 (16%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK-----SAKKATWFLLQGNDT 519
EL + Q DL L+++V Q ++ S+ + + + S + FL G+
Sbjct: 363 GELQAKEQQQLKDLAPNLKQHVIGQDKAVDSVAKAIKRNRIGFNGSGRPIGSFLFVGSTG 422
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL 569
IGK +A +A +FGS D + DM + + S L+G+ Y EK+
Sbjct: 423 IGKTEMAKQLARELFGSEDSMIRFDMSEYREPQSVAK--LIGSPPGYVGYDEAGQLTEKV 480
Query: 570 ------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++L+++++ A P F++IL DG T++ G+ +
Sbjct: 481 RRNPYSLILLDEVEKAHPDVLHTFLQILDDGRLTDSQGRTV 521
>gi|335358050|ref|ZP_08549920.1| putative Clp-like ATP-dependent protease, ATP-binding subunit
[Lactobacillus animalis KCTC 3501]
Length = 720
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 19/108 (17%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND---------------GVSSHS 556
FL G +GK LA +A +FG+ D + +DM + +D G +S
Sbjct: 453 FLFVGPTGVGKTELAKQLAYDMFGNKDAIIRLDMSEYSDRTAVSKLIGTTAGYVGYDDNS 512
Query: 557 EMLMGTLKNYEKLVVLVEDIDLADPQFI----KILADGFETENFGKVI 600
L ++ +VL+++I+ ADPQ I ++L DG T+ G +
Sbjct: 513 NTLTERVRRQPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTV 560
>gi|227530360|ref|ZP_03960409.1| ATP-binding subunit of chaperone [Lactobacillus vaginalis ATCC
49540]
gi|227349721|gb|EEJ40012.1| ATP-binding subunit of chaperone [Lactobacillus vaginalis ATCC
49540]
Length = 782
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 27/152 (17%)
Query: 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVEC-----KSAKKATWFLLQGNDTIGKRRLALS 528
Q DL K L E+V Q +++ I + KS + FL G +GK A
Sbjct: 474 QLRDLDKKLDEHVIGQTEAVDKIARAIRRNRIGLNKSGRPIGSFLFVGPTGVGKTETAKQ 533
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVL 572
+A +FGS D + DM + D S+ L+G Y E++ ++L
Sbjct: 534 LALQLFGSKDSMIRFDMSEYMDKTSTSK--LIGAAPGYVGYEEAGQLTEQVRRHPYSLIL 591
Query: 573 VEDIDLADP----QFIKILADGFETENFGKVI 600
+++++ A P F++IL DG T++ G+ +
Sbjct: 592 LDEVEKAHPDVMHMFLQILDDGRLTDSQGRTV 623
>gi|221198590|ref|ZP_03571635.1| negative regulator of genetic competence ClpC/mecB [Burkholderia
multivorans CGD2M]
gi|221207820|ref|ZP_03580827.1| ATPase family associated with various cellular activities (AAA)
protein [Burkholderia multivorans CGD2]
gi|221172317|gb|EEE04757.1| ATPase family associated with various cellular activities (AAA)
protein [Burkholderia multivorans CGD2]
gi|221181041|gb|EEE13443.1| negative regulator of genetic competence ClpC/mecB [Burkholderia
multivorans CGD2M]
Length = 953
Score = 42.4 bits (98), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 102/231 (44%), Gaps = 48/231 (20%)
Query: 415 VAKFRRQQSCSTIEFNFGNCTR-------KPQGVEPRLDSLKSNEGKE---------VKI 458
+A+ +R+Q +T F + K + ++ ++++ + G E ++
Sbjct: 500 IAQLKREQDYATSRKRFDEAKQFEERINAKQKALDEKMEAWQRKTGSETLEVTVESVAEV 559
Query: 459 TLALGNSELSDSAKLQRSDLYKV---LQENVPWQFDSIHSIVEVLVECKSA-----KKAT 510
L +S+ + +R L K+ L+E V Q D++ ++ + + ++ +
Sbjct: 560 VSRLTGIPVSELTQEERQKLLKMEEQLRERVVGQNDAVVAVSDAVRLSRAGLGQTHRPIA 619
Query: 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY--- 566
FL G +GK LA ++AESVFG + IDM ++ + H+ L+G Y
Sbjct: 620 TFLFLGPTGVGKTELAKALAESVFGDEQAIIRIDM---SEYMERHAVARLIGAPPGYVGY 676
Query: 567 -------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
E++ V+L+++I+ A P +++ DG T+ G+V+
Sbjct: 677 DEGGQLTERVRRRPYSVILLDEIEKAHPDVYNVLLQVFDDGRLTDGKGRVV 727
>gi|408355460|ref|YP_006843991.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Amphibacillus
xylanus NBRC 15112]
gi|407726231|dbj|BAM46229.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Amphibacillus
xylanus NBRC 15112]
Length = 811
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 74/150 (49%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L +L V Q +++ ++ + + ++ K F+ G +GK LA ++AE
Sbjct: 504 NLESILHGRVIGQSEAVTAVSKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 563
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSH-SEMLMGTLKNY----------EKL------VVLVE 574
++FG D + IDM ++ + H + L+G+ Y EK+ VVL++
Sbjct: 564 AMFGDEDAMIRIDM---SEYMEKHTTSRLVGSPPGYVGYEEGGQLTEKVRSKPYSVVLLD 620
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P+ +++L DG T++ G+++
Sbjct: 621 EIEKAHPEVFNILLQVLEDGRLTDSKGRLV 650
>gi|386360953|ref|YP_006059198.1| chaperone ATPase [Thermus thermophilus JL-18]
gi|383509980|gb|AFH39412.1| ATPase with chaperone activity, ATP-binding subunit [Thermus
thermophilus JL-18]
Length = 736
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 37/174 (21%)
Query: 469 DSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKR 523
D KL R L + L++ V Q ++I ++ L + + A FL G +GK
Sbjct: 434 DDEKLMR--LEEELRKRVVGQEEAIRALANALRRARVGLGGRTRVAASFLFVGQSGVGKT 491
Query: 524 RLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL------------- 569
+LA ++AE +FGS L DM + + HS L+G Y
Sbjct: 492 QLAKALAEVLFGSERALIRFDMSEFQE---PHSISKLIGAPPGYVGYEQGGRLTEAVRRQ 548
Query: 570 ---VVLVEDIDLADPQ----FIKILADGFETENFG------KVIFVLTKGDSSN 610
VVL+++I+ A P F+++L +G T+ G +VI ++T N
Sbjct: 549 PFSVVLLDEIEKAHPDIYNTFLQVLDEGRLTDGMGRTVDFRRVILIMTSNTGYN 602
>gi|384430734|ref|YP_005640094.1| ATPase [Thermus thermophilus SG0.5JP17-16]
gi|333966202|gb|AEG32967.1| ATPase AAA-2 domain protein [Thermus thermophilus SG0.5JP17-16]
Length = 736
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 37/174 (21%)
Query: 469 DSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKR 523
D KL R L + L++ V Q ++I ++ L + + A FL G +GK
Sbjct: 434 DDEKLMR--LEEELRKRVVGQEEAIRALANALRRARVGLGGRTRVAASFLFVGQSGVGKT 491
Query: 524 RLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL------------- 569
+LA ++AE +FGS L DM + + HS L+G Y
Sbjct: 492 QLAKALAEVLFGSERALIRFDMSEFQE---PHSISKLIGAPPGYVGYEQGGRLTEAVRRQ 548
Query: 570 ---VVLVEDIDLADPQ----FIKILADGFETENFG------KVIFVLTKGDSSN 610
VVL+++I+ A P F+++L +G T+ G +VI ++T N
Sbjct: 549 PFSVVLLDEIEKAHPDIYNTFLQVLDEGRLTDGMGRTVDFRRVILIMTSNTGYN 602
>gi|403385695|ref|ZP_10927752.1| negative regulator of genetic competence clpC/mecB [Kurthia sp.
JC30]
Length = 820
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 31/158 (19%)
Query: 469 DSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKR 523
+SAKL +L L + V Q +++ +I + ++ K F+ G +GK
Sbjct: 498 ESAKL--LNLEDELHKRVVGQGEAVEAISRAIRRARAGLKDPKRPIGSFIFLGPTGVGKT 555
Query: 524 RLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL--- 569
LA ++AE +FG D + IDM ++ + HS L+G+ Y EK+
Sbjct: 556 ELARALAEVMFGDEDSMIRIDM---SEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRK 612
Query: 570 ---VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
VVL+++I+ A P +++L DG T++ G+V+
Sbjct: 613 PYSVVLLDEIEKAHPDVFNILLQVLDDGRLTDSKGRVV 650
>gi|421474359|ref|ZP_15922402.1| Clp amino terminal domain protein, partial [Burkholderia
multivorans CF2]
gi|400232337|gb|EJO61964.1| Clp amino terminal domain protein, partial [Burkholderia
multivorans CF2]
Length = 924
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 102/231 (44%), Gaps = 48/231 (20%)
Query: 415 VAKFRRQQSCSTIEFNFGNCTR-------KPQGVEPRLDSLKSNEGKE---------VKI 458
+A+ +R+Q +T F + K + ++ ++++ + G E ++
Sbjct: 500 IAQLKREQDYATSRKRFDEAKQFEEQINAKQKALDEKMEAWQRKTGSETLEVTVESVAEV 559
Query: 459 TLALGNSELSDSAKLQRSDLYKV---LQENVPWQFDSIHSIVEVLVECKSA-----KKAT 510
L +S+ + +R L K+ L+E V Q D++ ++ + + ++ +
Sbjct: 560 VSRLTGIPVSELTQEERQKLLKMEEQLRERVVGQNDAVVAVSDAVRLSRAGLGQTHRPIA 619
Query: 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY--- 566
FL G +GK LA ++AESVFG + IDM ++ + H+ L+G Y
Sbjct: 620 TFLFLGPTGVGKTELAKALAESVFGDEQAIIRIDM---SEYMERHAVARLIGAPPGYVGY 676
Query: 567 -------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
E++ V+L+++I+ A P +++ DG T+ G+V+
Sbjct: 677 DEGGQLTERVRRRPYSVILLDEIEKAHPDVYNVLLQVFDDGRLTDGKGRVV 727
>gi|395242717|ref|ZP_10419713.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
pasteurii CRBIP 24.76]
gi|394479965|emb|CCI85953.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
pasteurii CRBIP 24.76]
Length = 740
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 29/171 (16%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVEC-----KSAKKA 509
E K + +G + + A+LQ +L L+ V Q ++ + + KS +
Sbjct: 408 EEKTNIPVGEIQKQEEAQLQ--NLASDLKSRVIGQDQAVEKVARAIRRNRIGFNKSGRPI 465
Query: 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY--- 566
FL G +GK LA +A +FGS D + IDM + + S L+G+ Y
Sbjct: 466 GSFLFVGPTGVGKTELAKQLARQMFGSDDAMIRIDMSEYMEQYSVSK--LIGSAPGYVGY 523
Query: 567 -------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
E++ ++L+++I+ A P F++IL DG T++ G+ +
Sbjct: 524 EEAGQLTEQVRHNPYSLILLDEIEKAHPDVMNLFLQILDDGRLTDSQGRTV 574
>gi|329954848|ref|ZP_08295865.1| ATPase family protein [Bacteroides clarus YIT 12056]
gi|328526952|gb|EGF53963.1| ATPase family protein [Bacteroides clarus YIT 12056]
Length = 842
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 74/159 (46%), Gaps = 27/159 (16%)
Query: 467 LSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIG 521
++ + L+ + + + LQ V Q +I + + ++ + K F+ G +G
Sbjct: 524 MAQAEGLKLAGMKEDLQAKVVAQDAAIEKLTKAILRSRVGLKDPNRPIGTFMFLGPTGVG 583
Query: 522 KRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL-- 569
K LA +A+ +FGS+D L IDM + + + ++G Y EK+
Sbjct: 584 KTHLAKQLAKYMFGSSDALIRIDMSEYMEKYTVSR--MIGAAPGYIGYEEGGQLTEKVRR 641
Query: 570 ----VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
+VL+++I+ A P +++L +G T+N+G+ I
Sbjct: 642 KPYSIVLLDEIEKAHPDVFNILLQVLDEGRLTDNYGRTI 680
>gi|116490585|ref|YP_810129.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni PSU-1]
gi|116091310|gb|ABJ56464.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Oenococcus oeni PSU-1]
Length = 823
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 81/178 (45%), Gaps = 33/178 (18%)
Query: 454 KEVKITLALGNSELSDSAKLQRSD------LYKVLQENVPWQFDSIHSIVEVLVECKSAK 507
+E IT +G +LQ+S+ L ++L V Q ++I ++ + +S
Sbjct: 481 REKDITDVVGQQTGIPVTQLQKSESERLLHLEEILHRRVIGQNEAISAVSRAIRRARSGI 540
Query: 508 K-----ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGT 562
K FL G +GK LA ++AE++F S D + +DM + + S+ L+G+
Sbjct: 541 KDPSRPIGTFLFLGPTGVGKTELAKALAEAMFDSEDNMIRVDMSEYQESYSASR--LIGS 598
Query: 563 ----------------LKNYEKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
++N+ VVL+++ + A P +++ DG+ T++ G+ +
Sbjct: 599 APGYVGYDEGGQLTERVRNHPYSVVLLDEAEKAHPDIFNLLLQVFDDGYMTDSKGRKV 656
>gi|381190271|ref|ZP_09897794.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Thermus sp.
RL]
gi|380451864|gb|EIA39465.1| ATP-dependent Clp protease, ATP-binding subunit ClpA [Thermus sp.
RL]
Length = 736
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 37/174 (21%)
Query: 469 DSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKR 523
D KL R L + L++ V Q ++I ++ L + + A FL G +GK
Sbjct: 434 DDEKLMR--LEEELRKRVVGQEEAIRALANALRRARVGLGGRTRVAASFLFVGQSGVGKT 491
Query: 524 RLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKL------------- 569
+LA ++AE +FGS L DM + + HS L+G Y
Sbjct: 492 QLAKALAEVLFGSERALIRFDMSEFQE---PHSISKLIGAPPGYVGYEQGGRLTEAVRRQ 548
Query: 570 ---VVLVEDIDLADPQ----FIKILADGFETENFG------KVIFVLTKGDSSN 610
VVL+++I+ A P F+++L +G T+ G +VI ++T N
Sbjct: 549 PFSVVLLDEIEKAHPDIYNTFLQVLDEGRLTDGMGRTVDFRRVILIMTSNTGYN 602
>gi|331696043|ref|YP_004332282.1| ATP-dependent chaperone ClpB [Pseudonocardia dioxanivorans CB1190]
gi|326950732|gb|AEA24429.1| ATP-dependent chaperone ClpB [Pseudonocardia dioxanivorans CB1190]
Length = 874
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 31/169 (18%)
Query: 472 KLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLA 526
KL R D +VL V Q +++ ++ + ++ +S K F+ G +GK LA
Sbjct: 566 KLLRLD--EVLHRRVVGQDEAVQAVADAIIRARSGVKDPRRPTGSFIFLGPTGVGKTELA 623
Query: 527 LSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVL 572
++AE++F S D + IDM + + G + E L ++ VVL
Sbjct: 624 KALAEALFDSEDNIVRIDMSEYQERHTVSRLVGAPPGYVGYEEGGQLTEAVRRRPYAVVL 683
Query: 573 VEDIDLADPQ----FIKILADGFETE------NFGKVIFVLTKGDSSNY 611
++I+ A P +++L DG T+ +F + ++T S Y
Sbjct: 684 FDEIEKAHPDVFNTLLQVLDDGRLTDAQGRTVDFRNTVIIMTSNIGSQY 732
>gi|410029073|ref|ZP_11278909.1| chaperone ATPase [Marinilabilia sp. AK2]
Length = 844
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 54/231 (23%)
Query: 482 LQENVPWQFDSIHSIVEVL----VECKSAKKATW-FLLQGNDTIGKRRLALSIAESVFGS 536
LQ V Q ++I +V+ + V K KK F+ G +GK LA +A +F
Sbjct: 534 LQSKVIGQDEAIKKLVKAIQRTRVGLKDPKKPIGSFIFLGPTGVGKTELAKMLATYLFDK 593
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
D L IDM + + S L+G Y EK+ VVL+++I+ A
Sbjct: 594 EDSLVRIDMSEYMEKFSVSR--LVGAPPGYVGYEEGGQLTEKVRRKPYSVVLLDEIEKAH 651
Query: 581 PQ----FIKILADGFETENFGKVIFVLTKGDSSNYEERIENQDSVINMTLKVNERN-QNF 635
P +++L DG T+ G+ R++ ++++I MT + R+ ++F
Sbjct: 652 PDVFNILLQVLDDGILTDGLGR---------------RVDFRNTIIIMTSNIGVRDLKDF 696
Query: 636 DHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLD 686
A FA+K+K +D+ AT + S KK FS + N LD
Sbjct: 697 G----AGIGFASKSKQQSMDDVMKAT------IQSALKKAFSPE-FLNRLD 736
>gi|387907319|ref|YP_006337655.1| chaperone ClpB [Blattabacterium sp. (Blaberus giganteus)]
gi|387582212|gb|AFJ90990.1| chaperone ClpB [Blattabacterium sp. (Blaberus giganteus)]
Length = 874
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 65/175 (37%), Gaps = 15/175 (8%)
Query: 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHA 60
+R+ G + IK IE+ S G V SS + + W
Sbjct: 126 LRDQGITEKKIKKVIENIRKKS---------GKVISSTAENMYNALDKYAKNLNEWVYKG 176
Query: 61 LFSSQKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQEL 120
P E+I+ V ++ R+ + N +++GD A+ R+ GD+P L
Sbjct: 177 KLD---PVIGRDEEIRRVLQILSRRTKNNPILIGDAGVGKTAIAEGLAHRIISGDIPDNL 233
Query: 121 KQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
K V A + K E E LK + +TS+ G I++ ++ V
Sbjct: 234 KNKKVFSLDMASLIAGAKYKGEFE---ERLKAVIKEVTSLDGEVILFIDEIHTLV 285
>gi|377556369|ref|ZP_09786077.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
gastricus PS3]
gi|376168507|gb|EHS87273.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
gastricus PS3]
Length = 645
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 27/152 (17%)
Query: 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVEC-----KSAKKATWFLLQGNDTIGKRRLALS 528
Q DL K L +V Q +++ I + KS + FL G +GK A
Sbjct: 329 QLRDLDKQLGAHVIGQQEAVDKIARAIRRNRIGLNKSGRPIGSFLFVGPTGVGKTETAKQ 388
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVL 572
+A+ +FGSTD + DM + D S+ L+G Y E++ ++L
Sbjct: 389 LAKLLFGSTDAMIRFDMSEYMDKTSTSK--LIGAAPGYVGYEEAGQLTEQVRRHPYSLIL 446
Query: 573 VEDIDLADP----QFIKILADGFETENFGKVI 600
+++++ A P F++IL DG T++ G+ +
Sbjct: 447 LDEVEKAHPDVMHMFLQILDDGRLTDSQGRTV 478
>gi|408409861|ref|ZP_11181132.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus sp.
66c]
gi|407875979|emb|CCK82938.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus sp.
66c]
Length = 697
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + D + L+GT Y
Sbjct: 441 FLFVGPTGVGKTELAKQLALDMFGSKDAIIRLDMSEYADRTAVSK--LIGTSAGYVGYDD 498
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
EK+ ++L+++I+ ADPQ I ++L DG T+ G +
Sbjct: 499 NSNTLTEKVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTV 548
>gi|423334774|ref|ZP_17312552.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactobacillus
reuteri ATCC 53608]
gi|337728295|emb|CCC03390.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactobacillus
reuteri ATCC 53608]
Length = 830
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L KVL + V Q +++ + + + +S K F+ G +GK LA ++A
Sbjct: 511 NLEKVLHQRVIGQDEAVTVVAKAIRRARSGLKDPSRPIGSFMFLGPTGVGKTELAKALAA 570
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 571 AMFGSEDNMIRIDMSEYMEKYSTSR--LIGAAPGYVGYDEGGQLTEKVRQHPYSVVLLDE 628
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
+ A P +++L DG+ T+ G+ +
Sbjct: 629 AEKAHPDVFNLLLQVLDDGYLTDAKGRRV 657
>gi|338729827|ref|YP_004659219.1| ATPase AAA-2 domain-containing protein [Thermotoga thermarum DSM
5069]
gi|335364178|gb|AEH50123.1| ATPase AAA-2 domain protein [Thermotoga thermarum DSM 5069]
Length = 742
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 77/176 (43%), Gaps = 29/176 (16%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDT 519
+ L +S K + L ++L + + Q D++ + + + + ++ K A FL G
Sbjct: 433 TRLIESEKEKLMKLEELLHKRIVDQEDAVRIVAQTIRKARAGLKDPKRPAGVFLFLGPTG 492
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKN 565
+GK LA ++AE +FGS + L IDM + + G + E L ++
Sbjct: 493 VGKTELAKALAEVLFGSENALIRIDMSEYTEKHTVSRLIGAPPGYVGYEEGGQLTEQVRR 552
Query: 566 YEKLVVLVEDIDLADPQFIKILADGFE----------TENFGKVIFVLTKGDSSNY 611
++L+++I+ A P+ +L F+ +F I ++T +S Y
Sbjct: 553 KPYSIILLDEIEKAHPEIFNVLLQVFDDGRLTSANGTVVDFKNTIIIMTSNIASEY 608
>gi|150015015|ref|YP_001307269.1| ATPase [Clostridium beijerinckii NCIMB 8052]
gi|149901480|gb|ABR32313.1| ATPase AAA-2 domain protein [Clostridium beijerinckii NCIMB 8052]
Length = 824
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 25/156 (16%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGK 522
S+S +L + L ++L + V Q +++ SI + + K F+ G +GK
Sbjct: 498 SESERLLK--LEEILHKRVVGQNEAVKSIARAVRRARVGIKDPNRPIGSFIFLGPTGVGK 555
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVS------------SHSE--MLMGTLKNYEK 568
L+ ++AE++FG + + IDM + +G S H E L ++
Sbjct: 556 TELSKALAEAMFGDENNIIRIDMSEYMEGHSVSRLIGSPPGYVGHEEGGQLTEAVRRKPY 615
Query: 569 LVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
+VL+++I+ A+P+ ++I+ DG T+ GK++
Sbjct: 616 SIVLLDEIEKANPEVFNILLQIMEDGRLTDGKGKIV 651
>gi|379708456|ref|YP_005263661.1| ATP-dependent Clp protease ATP-binding subunit clpC [Nocardia
cyriacigeorgica GUH-2]
gi|374845955|emb|CCF63025.1| ATP-dependent Clp protease ATP-binding subunit clpC [Nocardia
cyriacigeorgica GUH-2]
Length = 819
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 41/224 (18%)
Query: 415 VAKFRRQQSCSTIEFNFGNCTRKPQGV---EPRLDSLKSNEGKEVKIT---------LAL 462
VA+ RR++ + ++ + E +L E +V +T +
Sbjct: 437 VARLRREKDAAVAAEDYEKAKELKSEIAVAEEQLAGAGQTEAPQVTVTDIAEVISRQTGI 496
Query: 463 GNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGN 517
SEL+ + + L VL + V Q ++I ++ E + ++ K FL G
Sbjct: 497 PVSELTTEERQRLLGLEDVLHKRVIGQDEAIVAVAEAVRRARAGLKDPNRPIGSFLFLGP 556
Query: 518 DTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY---------- 566
+GK LA ++AE+VFG D L DM + + H+ L+G Y
Sbjct: 557 TGVGKTELAKALAEAVFGDEDRLIRFDMSEFQE---KHTVSRLVGAPPGYVGYDDAAQLT 613
Query: 567 EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
+K+ V+L ++I+ A P +++L DG T++ G+ +
Sbjct: 614 DKVRRQPYSVILFDEIEKAHPDVFNVLLQLLDDGRVTDSKGRTV 657
>gi|354807087|ref|ZP_09040563.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Lactobacillus
curvatus CRL 705]
gi|354514467|gb|EHE86438.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Lactobacillus
curvatus CRL 705]
Length = 733
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 22/117 (18%)
Query: 504 KSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTL 563
KS + FL G +GK LA IA+ +FGSTD + DM + + S L+G+
Sbjct: 462 KSGRPIGSFLFVGPTGVGKTELAKQIAKELFGSTDAMIRFDMSEYMEKFSVSK--LIGSP 519
Query: 564 KNY----------EKL------VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
Y E++ ++L+++++ A P F++IL DG T++ G+ +
Sbjct: 520 PGYVGYEEAGQLTEQVRRNPYSLILLDEVEKAHPDVMHMFLQILDDGRLTDSQGRTV 576
>gi|239813549|ref|YP_002942459.1| type VI secretion ATPase, ClpV1 family [Variovorax paradoxus S110]
gi|239800126|gb|ACS17193.1| type VI secretion ATPase, ClpV1 family [Variovorax paradoxus S110]
Length = 909
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 8/149 (5%)
Query: 15 IEDSSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHALFSSQK-------P 67
I D+S S + +G G +P S + A + + A+ ++K P
Sbjct: 153 ICDASPESQMRAQDGTGMG-SGAPGEDSGAMAPAAMGKGDALKKFAVDLTEKAKKGEMDP 211
Query: 68 ASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIK 127
+ E+I+ + ++ +R+++ N ++ G+ A+V F R+ RGDVP +LK ++
Sbjct: 212 ITGRDEEIRQIVDILMRRRQNNPLLTGEAGVGKTAVVEGFAQRLARGDVPPQLKDVKLLT 271
Query: 128 FHFAPVTLRFMKKEEVEMNLTELKRKVDS 156
+ K E E L ++ +V +
Sbjct: 272 LDIGLLQAGASMKGEFEQRLRQVIDEVQA 300
>gi|444415816|ref|ZP_21212040.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0199]
gi|444278995|gb|ELU84413.1| putative ATP-dependent Clp protease ATP-binding subunit ClpE
[Streptococcus pneumoniae PNI0199]
Length = 701
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ A PQ I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKAVPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|420164359|ref|ZP_14671089.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM095]
gi|394231748|gb|EJD77371.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM095]
Length = 773
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L L + V Q D+++SI + + ++ K F+ G +GK LA ++AE
Sbjct: 501 NLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
S+FG D + +DM ++ + H+ L+G Y EK+ V+L +
Sbjct: 561 SMFGEDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFD 617
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P +++L DG T+ G+ +
Sbjct: 618 EIEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|330470478|ref|YP_004408221.1| ATPase aaa-2 domain-containing protein [Verrucosispora maris
AB-18-032]
gi|328813449|gb|AEB47621.1| atpase aaa-2 domain protein [Verrucosispora maris AB-18-032]
Length = 846
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 27/144 (18%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAESVFGS 536
L + V Q D++ ++ + + ++ K + F+ G +GK L+ ++AE +FGS
Sbjct: 511 LHKRVIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALAEFLFGS 570
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
D L +DM + +D + L+G Y EK+ VVL ++I+ A
Sbjct: 571 EDALIQLDMSEFHDRYTVSR--LVGAPPGYVGYDEGGQLTEKVRRRPFSVVLFDEIEKAH 628
Query: 581 PQ----FIKILADGFETENFGKVI 600
P ++IL DG T+ G+++
Sbjct: 629 PDVFNTLLQILEDGRLTDGQGRIV 652
>gi|377832565|ref|ZP_09815523.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
mucosae LM1]
gi|377553757|gb|EHT15478.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
mucosae LM1]
Length = 707
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 19/108 (17%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND---------------GVSSHS 556
FL G +GK LA +A +FG+ D + +DM + D G +S
Sbjct: 445 FLFVGPTGVGKTELAKQLALDMFGNKDDIIRLDMSEYADRTAVSKLIGTTAGYVGYDDNS 504
Query: 557 EMLMGTLKNYEKLVVLVEDIDLADPQFI----KILADGFETENFGKVI 600
L ++ + +VL+++I+ ADPQ I ++L DG T+ G +
Sbjct: 505 NTLTEKVRRHPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTV 552
>gi|134099924|ref|YP_001105585.1| Clp protease ATP binding subunit [Saccharopolyspora erythraea NRRL
2338]
gi|291008683|ref|ZP_06566656.1| Clp protease ATP binding subunit [Saccharopolyspora erythraea NRRL
2338]
gi|133912547|emb|CAM02660.1| clp protease ATP binding subunit [Saccharopolyspora erythraea NRRL
2338]
Length = 838
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 73/159 (45%), Gaps = 23/159 (14%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDT 519
S L++ + + +L L V Q D++ ++ + +S + FL G
Sbjct: 514 SRLTEQERTRLRNLEGELHRRVIGQDDAVRALARAVRRSRSGVGNANRPVGSFLFLGPTG 573
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDM---RKRND---------GVSSHSEM--LMGTLKN 565
+GK LA ++AE++FG D + +DM ++R++ G + E L ++
Sbjct: 574 VGKTELAKALAETLFGDEDRMIRLDMSEFQERHNAARLIGAPPGYVGYGEAGELTEAVRR 633
Query: 566 YEKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
VVL+++++ A P +++L DG T+ G+ +
Sbjct: 634 RPYSVVLLDEVEKAHPDVFNTLLQVLEDGRLTDGQGRTV 672
>gi|419441765|ref|ZP_13981800.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA13224]
gi|379555261|gb|EHZ20330.1| putative ATP-dependent Clp protease ATP-binding subunit
[Streptococcus pneumoniae GA13224]
Length = 701
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGK 522
SD +L+ D+ LQ+ V Q ++ ++ + ++ + FL G+ +GK
Sbjct: 401 SDIERLK--DMAHRLQDKVIGQDKAVEAVARAIRRNRAGFDEGNRPIGSFLFVGSTGVGK 458
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY-----------EKL-- 569
LA +A +FG+ D + +DM + +D + L+GT Y E++
Sbjct: 459 TELAKQLALDMFGTQDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDDNSNTLTERVRR 516
Query: 570 ----VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLTKGDSSNYE 612
++L+++I+ AD Q I ++L DG T+ NF + + T YE
Sbjct: 517 NPYSIILLDEIEKADSQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIATSNAGFGYE 573
>gi|418614178|ref|ZP_13177162.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU118]
gi|374821459|gb|EHR85520.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU118]
Length = 817
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L L + V Q D+++SI + + ++ K F+ G +GK LA ++AE
Sbjct: 501 NLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
S+FG D + +DM ++ + H+ L+G Y EK+ V+L +
Sbjct: 561 SMFGEDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFD 617
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P +++L DG T+ G+ +
Sbjct: 618 EIEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|294632198|ref|ZP_06710758.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
sp. e14]
gi|292835531|gb|EFF93880.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Streptomyces
sp. e14]
Length = 856
Score = 42.0 bits (97), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 67/142 (47%), Gaps = 23/142 (16%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
L E V Q +++ + E ++ ++ + FL G +GK LA ++AE++FGS
Sbjct: 537 LHERVVGQDEAVSVVAEAVLRSRAGLASPDRPIGSFLFLGPTGVGKTELARALAEALFGS 596
Query: 537 TDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADPQ 582
+ + +DM + + G H E L ++ + ++L+++++ A P
Sbjct: 597 EERMVRLDMSEYQERHTVSRLVGAPPGYVGHEEAGQLTEVVRRHPYSLLLLDEVEKAHPD 656
Query: 583 ----FIKILADGFETENFGKVI 600
+++L DG T++ G+ +
Sbjct: 657 VFNILLQVLDDGRLTDSQGRTV 678
>gi|313894758|ref|ZP_07828318.1| negative regulator of genetic competence ClpC/MecB [Selenomonas sp.
oral taxon 137 str. F0430]
gi|312976439|gb|EFR41894.1| negative regulator of genetic competence ClpC/MecB [Selenomonas sp.
oral taxon 137 str. F0430]
Length = 835
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 29/148 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L K + V Q ++IH++ + + ++ K FL G+ +GK LA ++AES
Sbjct: 509 LEKTIGRRVIGQDEAIHAVSKAVRRARAGVKDPRRPIGSFLFLGSTGVGKTELARALAES 568
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEM-LMGTLKNYEKL----------------VVLVED 575
VFG+ D + DM ++ + H+ L+G Y +VL ++
Sbjct: 569 VFGTEDAIIRFDM---SEYMEKHTTARLVGAPPGYVGYEEGGQLTDAVRKKPFSIVLFDE 625
Query: 576 IDLADP----QFIKILADGFETENFGKV 599
++ A P +++L DG T+ G V
Sbjct: 626 VEKAHPDVFHMLLQVLEDGRLTDGQGAV 653
>gi|227534738|ref|ZP_03964787.1| ATP-binding subunit of chaperone [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|301066806|ref|YP_003788829.1| Clp protease/DnaK/DnaJ chaperone ATP-binding subunit [Lactobacillus
casei str. Zhang]
gi|417980952|ref|ZP_12621629.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus casei
12A]
gi|417983778|ref|ZP_12624414.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus casei
21/1]
gi|417993415|ref|ZP_12633763.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus casei
CRF28]
gi|417996630|ref|ZP_12636908.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus casei
M36]
gi|418002452|ref|ZP_12642570.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus casei
UCD174]
gi|418011192|ref|ZP_12650958.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus casei
Lc-10]
gi|227187494|gb|EEI67561.1| ATP-binding subunit of chaperone [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|300439213|gb|ADK18979.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Lactobacillus casei str. Zhang]
gi|410523888|gb|EKP98807.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus casei
12A]
gi|410528047|gb|EKQ02909.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus casei
21/1]
gi|410531523|gb|EKQ06245.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus casei
CRF28]
gi|410534969|gb|EKQ09599.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus casei
M36]
gi|410544108|gb|EKQ18446.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus casei
UCD174]
gi|410552829|gb|EKQ26843.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus casei
Lc-10]
Length = 741
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 29/171 (16%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVEC-----KSAKKA 509
E K + +G EL + Q +L L+++V Q +++ + + KS +
Sbjct: 414 EEKTNIPVG--ELKAQEQAQLKNLAGDLEKHVIGQNEAVDKVARAIRRNRIGFNKSGRPI 471
Query: 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY--- 566
FL G +GK LA +A+ +FGS D + DM + + S L+G+ Y
Sbjct: 472 GSFLFVGPTGVGKTELAKQLAKELFGSEDAMIRFDMSEYMEKFSVSK--LIGSPPGYVGY 529
Query: 567 -------EKL------VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
EK+ ++L+++I+ A P F++IL DG T++ G+ +
Sbjct: 530 EEAGQLTEKVRRNPYSLILLDEIEKAHPDVMNMFLQILDDGRLTDSQGRTV 580
>gi|159037791|ref|YP_001537044.1| ATPase [Salinispora arenicola CNS-205]
gi|157916626|gb|ABV98053.1| ATPase AAA-2 domain protein [Salinispora arenicola CNS-205]
Length = 836
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 27/144 (18%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAESVFGS 536
L + V Q D++ ++ + + ++ K + F+ G +GK L+ ++AE +FGS
Sbjct: 511 LHKRVIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALAEFLFGS 570
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
D L +DM + +D + L+G Y EK+ VVL ++I+ A
Sbjct: 571 EDALIQLDMSEFHDRYTVSR--LVGAPPGYVGYDEGGQLTEKVRRRPFSVVLFDEIEKAH 628
Query: 581 PQ----FIKILADGFETENFGKVI 600
P ++IL DG T+ G+++
Sbjct: 629 PDVFNTLLQILEDGRLTDGQGRIV 652
>gi|145596784|ref|YP_001161081.1| ATPase [Salinispora tropica CNB-440]
gi|145306121|gb|ABP56703.1| ATPase AAA-2 domain protein [Salinispora tropica CNB-440]
Length = 844
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 27/144 (18%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAESVFGS 536
L + V Q D++ ++ + + ++ K + F+ G +GK L+ ++AE +FGS
Sbjct: 511 LHKRVIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALAEFLFGS 570
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
D L +DM + +D + L+G Y EK+ VVL ++I+ A
Sbjct: 571 EDALIQLDMSEFHDRYTVSR--LVGAPPGYVGYDEGGQLTEKVRRRPFSVVLFDEIEKAH 628
Query: 581 PQ----FIKILADGFETENFGKVI 600
P ++IL DG T+ G+++
Sbjct: 629 PDVFNTLLQILEDGRLTDGQGRIV 652
>gi|429204815|ref|ZP_19196097.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
saerimneri 30a]
gi|428146851|gb|EKW99085.1| ATP-dependent Clp protease, ATP-binding subunit [Lactobacillus
saerimneri 30a]
Length = 707
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + +D + L+G Y
Sbjct: 449 FLFVGPTGVGKTELAKQLARDMFGSKDSIIRLDMSEYSDRTAVSK--LIGATAGYVGYGD 506
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
EK+ ++L+++I+ ADPQ I ++L DG T+ G +
Sbjct: 507 NGNTLTEKVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTV 556
>gi|416127894|ref|ZP_11597159.1| negative regulator of genetic competence clpC/mecB [Staphylococcus
epidermidis FRI909]
gi|418328513|ref|ZP_12939624.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis 14.1.R1.SE]
gi|418631361|ref|ZP_13193825.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU128]
gi|418634140|ref|ZP_13196536.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU129]
gi|420178488|ref|ZP_14684819.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM057]
gi|420179587|ref|ZP_14685875.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM053]
gi|420191066|ref|ZP_14697002.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM037]
gi|420200939|ref|ZP_14706577.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM031]
gi|420203524|ref|ZP_14709086.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM015]
gi|420233736|ref|ZP_14738315.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH051475]
gi|319399727|gb|EFV87976.1| negative regulator of genetic competence clpC/mecB [Staphylococcus
epidermidis FRI909]
gi|365231831|gb|EHM72848.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis 14.1.R1.SE]
gi|374835462|gb|EHR99072.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU128]
gi|374837442|gb|EHS01006.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU129]
gi|394246423|gb|EJD91681.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM057]
gi|394253576|gb|EJD98581.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM053]
gi|394258024|gb|EJE02919.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM037]
gi|394267420|gb|EJE12013.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM031]
gi|394274485|gb|EJE18901.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM015]
gi|394304910|gb|EJE48301.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH051475]
Length = 817
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L L + V Q D+++SI + + ++ K F+ G +GK LA ++AE
Sbjct: 501 NLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
S+FG D + +DM ++ + H+ L+G Y EK+ V+L +
Sbjct: 561 SMFGEDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFD 617
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P +++L DG T+ G+ +
Sbjct: 618 EIEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|308176140|ref|YP_003915546.1| ATP-dependent Clp protease ATP-binding subunit [Arthrobacter
arilaitensis Re117]
gi|307743603|emb|CBT74575.1| ATP-dependent Clp protease ATP-binding subunit [Arthrobacter
arilaitensis Re117]
Length = 852
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 23/160 (14%)
Query: 464 NSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK-----SAKKATWFLLQGND 518
S ++ K + + L + L +V Q D++ ++ + + + + FL G
Sbjct: 514 TSRITGDDKTRLASLEESLHASVIGQKDAVSAVARAVRRNRTGMSPAGRPIGSFLFLGPT 573
Query: 519 TIGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLK 564
+GK LA ++A ++FGS D L +DM + + G H E L ++
Sbjct: 574 GVGKTELAKALATNLFGSADSLLRVDMSEYGEKHTVARLIGAPPGYIGHDEPGQLTEKVR 633
Query: 565 NYEKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
V+L+++I+ A P +++L DG T++ G+ +
Sbjct: 634 RNPYSVILLDEIEKAHPDVFNVLLQVLDDGRLTDSAGRTV 673
>gi|300864313|ref|ZP_07109191.1| ATPase AAA-2 [Oscillatoria sp. PCC 6506]
gi|300337702|emb|CBN54337.1| ATPase AAA-2 [Oscillatoria sp. PCC 6506]
Length = 904
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 29/179 (16%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAES 532
L K L + V Q +++ ++ + ++ K FL G +GK LA ++AE
Sbjct: 590 LEKHLHQRVIGQHEAVEAVSAAIRRARAGMKDPGRPIGSFLFMGPTGVGKTELARALAEF 649
Query: 533 VFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDL 578
+F + D + IDM + + G + E L ++ + VVL ++++
Sbjct: 650 LFDTDDAIVRIDMSEYMEKHSVSRLVGAPPGYVGYDEGGQLSEAVRRHPYSVVLFDEVEK 709
Query: 579 ADPQ----FIKILADGFETENFGKV------IFVLTKGDSSNYEERIENQDSVINMTLK 627
A P +++L DG T++ G+V + V+T S+Y + DS M K
Sbjct: 710 AHPDVFNILLQVLDDGRITDSQGRVVDFRNTVIVMTSNIGSDYILDVAGDDSKYEMMYK 768
>gi|22255857|gb|AAM94782.1| CalR4 [Micromonospora echinospora]
Length = 797
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 27/144 (18%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAESVFGS 536
L + V Q D++ ++ + + ++ K + F+ G +GK L+ ++AE +FGS
Sbjct: 473 LHKRVIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALAEFLFGS 532
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
D L +DM + +D + L+G Y EK+ VVL ++I+ A
Sbjct: 533 EDALIQLDMSEFHDRYTVSR--LVGAPPGYVGYDEGGQLTEKVRRRPFSVVLFDEIEKAH 590
Query: 581 PQ----FIKILADGFETENFGKVI 600
P ++IL DG T+ G+++
Sbjct: 591 PDVFNTLLQILEDGRLTDGQGRIV 614
>gi|417999499|ref|ZP_12639708.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus casei
T71499]
gi|418012522|ref|ZP_12652222.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus casei
Lpc-37]
gi|410539130|gb|EKQ13668.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus casei
T71499]
gi|410556746|gb|EKQ30621.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus casei
Lpc-37]
Length = 741
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 29/171 (16%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVEC-----KSAKKA 509
E K + +G EL + Q +L L+++V Q +++ + + KS +
Sbjct: 414 EEKTNIPVG--ELKAQEQAQLKNLAGDLEKHVIGQNEAVDKVARAIRRNRIGFNKSGRPI 471
Query: 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY--- 566
FL G +GK LA +A+ +FGS D + DM + + S L+G+ Y
Sbjct: 472 GSFLFVGPTGVGKTELAKQLAKELFGSEDAMIRFDMSEYMEKFSVSK--LIGSPPGYVGY 529
Query: 567 -------EKL------VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
EK+ ++L+++I+ A P F++IL DG T++ G+ +
Sbjct: 530 EEAGQLTEKVRRNPYSLILLDEIEKAHPDVMNMFLQILDDGRLTDSQGRTV 580
>gi|303236051|ref|ZP_07322654.1| ATP-dependent chaperone protein ClpB [Prevotella disiens
FB035-09AN]
gi|302483924|gb|EFL46916.1| ATP-dependent chaperone protein ClpB [Prevotella disiens
FB035-09AN]
Length = 863
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P ++I+ V ++ R+ + N +++G+ + A+V GR+ RGDVP+ LK +
Sbjct: 177 PVIGRDDEIRRVLQILSRRTKNNPILIGEPGTGKTAIVEGLAGRIIRGDVPENLKDKQLY 236
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
+ K E E LK + +T+ G I++ ++ V
Sbjct: 237 SLDMGALLAGAKYKGEFE---ERLKSVIKEVTNAEGNIILFIDEIHTLV 282
>gi|420213021|ref|ZP_14718362.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM001]
gi|394277269|gb|EJE21595.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM001]
Length = 817
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L L + V Q D+++SI + + ++ K F+ G +GK LA ++AE
Sbjct: 501 NLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
S+FG D + +DM ++ + H+ L+G Y EK+ V+L +
Sbjct: 561 SMFGEDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFD 617
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P +++L DG T+ G+ +
Sbjct: 618 EIEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|385820467|ref|YP_005856854.1| chaperone ATPase [Lactobacillus casei LC2W]
gi|385823654|ref|YP_005859996.1| chaperone ATPase [Lactobacillus casei BD-II]
gi|327382794|gb|AEA54270.1| ATPase with chaperone activity, ATP-binding subunit [Lactobacillus
casei LC2W]
gi|327385981|gb|AEA57455.1| ATPase with chaperone activity, ATP-binding subunit [Lactobacillus
casei BD-II]
Length = 741
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 29/171 (16%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVEC-----KSAKKA 509
E K + +G EL + Q +L L+++V Q +++ + + KS +
Sbjct: 414 EEKTNIPVG--ELKAQEQAQLKNLAGDLEKHVIGQNEAVDKVARAIRRNRIGFNKSGRPI 471
Query: 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY--- 566
FL G +GK LA +A+ +FGS D + DM + + S L+G+ Y
Sbjct: 472 GSFLFVGPTGVGKTELAKQLAKELFGSEDAMIRFDMSEYMEKFSVSK--LIGSPPGYVGY 529
Query: 567 -------EKL------VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
EK+ ++L+++I+ A P F++IL DG T++ G+ +
Sbjct: 530 EEAGQLTEKVRRNPYSLILLDEIEKAHPDVMNMFLQILDDGRLTDSQGRTV 580
>gi|238061431|ref|ZP_04606140.1| ATPase [Micromonospora sp. ATCC 39149]
gi|237883242|gb|EEP72070.1| ATPase [Micromonospora sp. ATCC 39149]
Length = 818
Score = 42.0 bits (97), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 27/144 (18%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAESVFGS 536
L + V Q D++ ++ + + ++ K + F+ G +GK L+ ++AE +FGS
Sbjct: 490 LHKRVIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALAEFLFGS 549
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
D L +DM + +D + L+G Y EK+ VVL ++I+ A
Sbjct: 550 EDALIQLDMSEFHDRYTVSR--LVGAPPGYVGYDEGGQLTEKVRRRPFSVVLFDEIEKAH 607
Query: 581 PQ----FIKILADGFETENFGKVI 600
P ++IL DG T+ G+++
Sbjct: 608 PDVFNTLLQILEDGRLTDGQGRIV 631
>gi|386852989|ref|YP_006271002.1| Chaperone protein clpB [Actinoplanes sp. SE50/110]
gi|359840493|gb|AEV88934.1| Chaperone protein clpB [Actinoplanes sp. SE50/110]
Length = 840
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 27/144 (18%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAESVFGS 536
L + V Q D++ ++ + + ++ K + F+ G +GK L+ ++AE +FGS
Sbjct: 511 LHKRVIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALAEFLFGS 570
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
D L +DM + +D + L+G Y EK+ VVL ++I+ A
Sbjct: 571 EDALIQLDMSEFHDRYTVSR--LVGAPPGYVGYDEGGQLTEKVRRKPFSVVLFDEIEKAH 628
Query: 581 PQ----FIKILADGFETENFGKVI 600
P ++IL DG T+ G+++
Sbjct: 629 PDVFNTLLQILEDGRLTDGQGRIV 652
>gi|312869472|ref|ZP_07729628.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
oris PB013-T2-3]
gi|417886891|ref|ZP_12531034.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
oris F0423]
gi|311094980|gb|EFQ53268.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
oris PB013-T2-3]
gi|341592705|gb|EGS35572.1| negative regulator of genetic competence ClpC/MecB [Lactobacillus
oris F0423]
Length = 738
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 27/152 (17%)
Query: 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVEC-----KSAKKATWFLLQGNDTIGKRRLALS 528
Q DL K L+ +V Q +++ + + KS + FL G +GK A
Sbjct: 425 QLRDLDKELEAHVIGQNEAVDKVARAIRRNRIGLNKSGRPIGSFLFVGPTGVGKTETAKQ 484
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVL 572
+A+ +FGS D + DM + D S+ L+G Y E++ ++L
Sbjct: 485 LAKQLFGSKDAMIRFDMSEYMDKTSTSK--LIGAAPGYVGYEEAGQLTEQVRRHPYSLIL 542
Query: 573 VEDIDLADP----QFIKILADGFETENFGKVI 600
+++++ A P F++IL DG T++ G+ +
Sbjct: 543 LDEVEKAHPDVMHMFLQILDDGRLTDSQGRTV 574
>gi|251809941|ref|ZP_04824414.1| ClpB ATPase [Staphylococcus epidermidis BCM-HMP0060]
gi|282875025|ref|ZP_06283900.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis SK135]
gi|417646131|ref|ZP_12296010.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU144]
gi|417657343|ref|ZP_12307008.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU028]
gi|417911486|ref|ZP_12555191.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU105]
gi|417914018|ref|ZP_12557673.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU109]
gi|418326361|ref|ZP_12937547.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU071]
gi|418412965|ref|ZP_12986212.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
epidermidis BVS058A4]
gi|418617569|ref|ZP_13180460.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU120]
gi|418621530|ref|ZP_13184299.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU123]
gi|418624700|ref|ZP_13187370.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU125]
gi|418629608|ref|ZP_13192105.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU127]
gi|418664665|ref|ZP_13226132.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU081]
gi|419770348|ref|ZP_14296428.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-250]
gi|419772786|ref|ZP_14298812.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-K]
gi|420169340|ref|ZP_14675941.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM087]
gi|420171652|ref|ZP_14678190.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM070]
gi|420172258|ref|ZP_14678768.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM067]
gi|420182216|ref|ZP_14688354.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM049]
gi|420186453|ref|ZP_14692521.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM040]
gi|420188161|ref|ZP_14694175.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM039]
gi|420195785|ref|ZP_14701572.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM021]
gi|420203004|ref|ZP_14708590.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM018]
gi|420207055|ref|ZP_14712558.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM008]
gi|420208689|ref|ZP_14714147.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM003]
gi|420213834|ref|ZP_14719116.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH05005]
gi|420218208|ref|ZP_14723306.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH05001]
gi|421607888|ref|ZP_16049122.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Staphylococcus epidermidis AU12-03]
gi|251806484|gb|EES59141.1| ClpB ATPase [Staphylococcus epidermidis BCM-HMP0060]
gi|281296353|gb|EFA88872.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis SK135]
gi|329729477|gb|EGG65880.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU144]
gi|329734648|gb|EGG70955.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU028]
gi|341653063|gb|EGS76836.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU105]
gi|341653849|gb|EGS77614.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU109]
gi|365225772|gb|EHM67010.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU071]
gi|374410321|gb|EHQ81080.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU081]
gi|374817996|gb|EHR82168.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU120]
gi|374826897|gb|EHR90773.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU125]
gi|374828761|gb|EHR92586.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU123]
gi|374833371|gb|EHR97059.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU127]
gi|383357294|gb|EID34769.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-250]
gi|383358879|gb|EID36321.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
aureus subsp. aureus IS-K]
gi|394231370|gb|EJD77000.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM087]
gi|394237114|gb|EJD82609.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM070]
gi|394242898|gb|EJD88275.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM067]
gi|394250200|gb|EJD95394.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM049]
gi|394252169|gb|EJD97210.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM040]
gi|394255421|gb|EJE00372.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM039]
gi|394262906|gb|EJE07658.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM021]
gi|394268877|gb|EJE13428.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM018]
gi|394276375|gb|EJE20716.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM008]
gi|394281390|gb|EJE25639.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM003]
gi|394284232|gb|EJE28386.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH05005]
gi|394284688|gb|EJE28790.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH05001]
gi|406656502|gb|EKC82907.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Staphylococcus epidermidis AU12-03]
gi|410879558|gb|EKS27399.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Staphylococcus
epidermidis BVS058A4]
Length = 817
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L L + V Q D+++SI + + ++ K F+ G +GK LA ++AE
Sbjct: 501 NLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
S+FG D + +DM ++ + H+ L+G Y EK+ V+L +
Sbjct: 561 SMFGEDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFD 617
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P +++L DG T+ G+ +
Sbjct: 618 EIEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|229552620|ref|ZP_04441345.1| ATP-binding subunit of chaperone protein [Lactobacillus rhamnosus
LMS2-1]
gi|229314012|gb|EEN79985.1| ATP-binding subunit of chaperone protein [Lactobacillus rhamnosus
LMS2-1]
Length = 754
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 29/171 (16%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVEC-----KSAKKA 509
E K + +G EL + Q +L L+++V Q +++ + + K+ +
Sbjct: 426 EEKTNIPVG--ELKAQEQAQLKNLASDLEQHVIGQNEAVDKVARAIRRNRIGFNKTGRPI 483
Query: 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY--- 566
FL G +GK LA +A+ +FGS D + DM + + S L+G+ Y
Sbjct: 484 GSFLFVGPTGVGKTELAKQLAKELFGSEDAMIRFDMSEYMEKFSVSK--LIGSPPGYVGY 541
Query: 567 -------EKL------VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
EK+ ++L+++I+ A P F++IL DG T++ G+ +
Sbjct: 542 EEAGQLTEKVRRNPYSLILLDEIEKAHPDVMNMFLQILNDGRLTDSQGRTV 592
>gi|125718883|ref|YP_001036016.1| ATP-dependent protease, ATP-binding subunit [Streptococcus
sanguinis SK36]
gi|125498800|gb|ABN45466.1| ATP-dependent protease, ATP-binding subunit, putative
[Streptococcus sanguinis SK36]
Length = 712
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 29/132 (21%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ + + +DM + +D + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDMFGTKEAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ ++L+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 506 NSNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 565
Query: 605 KGDSSNYEERIE 616
YE +E
Sbjct: 566 SNAGFGYEAGLE 577
>gi|227530192|ref|ZP_03960241.1| ATP-binding Clp protease subunit [Lactobacillus vaginalis ATCC
49540]
gi|227349867|gb|EEJ40158.1| ATP-binding Clp protease subunit [Lactobacillus vaginalis ATCC
49540]
Length = 825
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 27/149 (18%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAE 531
+L KVL V Q +++ + + + +S K F+ G +GK LA ++A
Sbjct: 510 NLEKVLHNRVIGQNEAVSVVAKAIRRARSGLKDPQRPIGSFMFLGPTGVGKTELAKALAA 569
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVED 575
++FGS D + IDM + + S+ L+G Y EK+ VVL+++
Sbjct: 570 AMFGSEDNMIRIDMSEYMEKYSASR--LIGAAPGYVGYDEGGQLTEKVRQHPYSVVLLDE 627
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
+ A P +++L DG+ T+ G+ +
Sbjct: 628 AEKAHPDVFNLLLQVLDDGYLTDAKGRKV 656
>gi|189460390|ref|ZP_03009175.1| hypothetical protein BACCOP_01029 [Bacteroides coprocola DSM 17136]
gi|189432942|gb|EDV01927.1| ATP-dependent chaperone protein ClpB [Bacteroides coprocola DSM
17136]
Length = 862
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P E+I+ V ++ R+ + N V++G+ + A+V R+ RGDVP+ LK +
Sbjct: 177 PVIGRDEEIRRVLQILSRRTKNNPVLIGEPGTGKTAIVEGLAQRILRGDVPENLKNKQLF 236
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
+ K E E LK ++ +T G I++ ++ V
Sbjct: 237 SLDMGALVAGAKYKGEFE---ERLKSVINEVTKSDGNIILFIDEIHTLV 282
>gi|421470887|ref|ZP_15919229.1| Clp amino terminal domain protein, partial [Burkholderia
multivorans ATCC BAA-247]
gi|400226753|gb|EJO56806.1| Clp amino terminal domain protein, partial [Burkholderia
multivorans ATCC BAA-247]
Length = 913
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 102/231 (44%), Gaps = 48/231 (20%)
Query: 415 VAKFRRQQSCSTIEFNFGNCTR-------KPQGVEPRLDSLKSNEGKE---------VKI 458
+A+ +R+Q +T F + K + ++ ++++ + G E ++
Sbjct: 500 IAQLKREQDYATSRKRFDEAKQFEERINAKQKALDEKMEAWQRKTGSETLEVTVESVAEV 559
Query: 459 TLALGNSELSDSAKLQRSDLYKV---LQENVPWQFDSIHSIVEVLVECKSA-----KKAT 510
L +S+ + +R L K+ L+E V Q D++ ++ + + ++ +
Sbjct: 560 VSRLTGIPVSELTQEERQKLLKMEEQLRERVVGQNDAVVAVSDAVRLSRAGLGQTHRPIA 619
Query: 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY--- 566
FL G +GK LA ++AESVFG + IDM ++ + H+ L+G Y
Sbjct: 620 TFLFLGPTGVGKTELAKALAESVFGDEQAIIRIDM---SEYMERHAVARLIGAPPGYVGY 676
Query: 567 -------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
E++ V+L+++I+ A P +++ DG T+ G+V+
Sbjct: 677 DEGGQLTERVRRRPYSVILLDEIEKAHPDVYNVLLQVFDDGRLTDGKGRVV 727
>gi|417809210|ref|ZP_12455892.1| negative regulator of genetic competence [Lactobacillus salivarius
GJ-24]
gi|335351166|gb|EGM52660.1| negative regulator of genetic competence [Lactobacillus salivarius
GJ-24]
Length = 832
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 27/146 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAES 532
L K+L V Q +++ ++ + + +S K F+ G +GK LA ++AE+
Sbjct: 518 LEKILHNRVIGQDEAVKAVSKAIRRARSGLKDPTRPIGSFMFLGPTGVGKTELAKALAEA 577
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDI 576
+FGS D + IDM + + ++ L+G+ Y EK+ VVL++++
Sbjct: 578 MFGSEDSMIRIDMSEYMEKYTTSR--LIGSPPGYVGYDEGGQLTEKVRNNPYSVVLLDEV 635
Query: 577 DLADPQ----FIKILADGFETENFGK 598
+ A +++L DGF T++ G+
Sbjct: 636 EKAHNDVFNILLQVLDDGFLTDSKGR 661
>gi|422802978|ref|ZP_16851469.1| ATPase [Escherichia coli M863]
gi|323964492|gb|EGB59968.1| ATPase [Escherichia coli M863]
Length = 517
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 73/170 (42%), Gaps = 13/170 (7%)
Query: 11 IKNHIEDSSASSVFQCYTSSGGGVFSS-PCSPSSSEAHHFINPNT------FWQNHALFS 63
I++ I + S C + V S C SS +H I+ ++ + +N L +
Sbjct: 123 IRDSILPYNVSEALCCDVDAAEKVLISFSCKEDSSTSHSSIDNSSHEYISKYTENFTLLA 182
Query: 64 SQ---KPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQEL 120
P S +++I+ + ++ LR+++ N ++ GD ++V ++ G VP L
Sbjct: 183 ETGKLDPVSGREKEIRQLIDILLRRRQNNPILTGDPGVGKSSIVEGLALQISSGRVPDAL 242
Query: 121 KQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGD 170
K +++ + + E E LK + L S+ G AI++ +
Sbjct: 243 KNVNILALDMGALLAGASVRGEFE---NRLKLLLTELNSLSGTAILFIDE 289
>gi|270264626|ref|ZP_06192891.1| hypothetical protein SOD_i00430 [Serratia odorifera 4Rx13]
gi|270041309|gb|EFA14408.1| hypothetical protein SOD_i00430 [Serratia odorifera 4Rx13]
Length = 924
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 76/162 (46%), Gaps = 29/162 (17%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDT 519
+EL+ + + ++ L+E V Q D++ ++ + + ++ + FL G
Sbjct: 577 TELTQEERKKLLNMEDKLRERVVGQDDAVEAVSDAVRLSRAGLSQAHRPIATFLFLGPTG 636
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EK 568
+GK LA +IAE+VFG + IDM ++ + H+ L+G Y E+
Sbjct: 637 VGKTELAKAIAETVFGDEQAIIRIDM---SEYMERHAVARLIGAPPGYVGYDEGGQLTER 693
Query: 569 L------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
+ V+L+++I+ A P +++ DG T+ G+V+
Sbjct: 694 VRRRPYSVILLDEIEKAHPDVYNVLLQVFDDGRLTDGKGRVV 735
>gi|159901485|ref|YP_001547732.1| ATPase [Herpetosiphon aurantiacus DSM 785]
gi|159894524|gb|ABX07604.1| ATPase AAA-2 domain protein [Herpetosiphon aurantiacus DSM 785]
Length = 859
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P E+I+ +V R+ + N V++G+ A+V R+ RGDVP+ L+ +I
Sbjct: 181 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAARIVRGDVPEALRNKRLI 240
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
+ + E E LK + +TS G I++ +L V
Sbjct: 241 ALDLGALVAGAKFRGEFE---ERLKAVLSEVTSADGRVILFIDELHTVV 286
>gi|15612666|ref|NP_240969.1| class III stress response-related ATPase [Bacillus halodurans
C-125]
gi|10172715|dbj|BAB03822.1| class III stress response-related ATPase [Bacillus halodurans
C-125]
Length = 813
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 73/149 (48%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
+ ++L + V Q +++ +I + + ++ K F+ G +GK LA ++AE+
Sbjct: 504 MEEILHKRVIGQEEAVKAISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARAVAET 563
Query: 533 VFGSTDLLFHIDMRKRNDGVSSH-SEMLMGTLKNY----------EKL------VVLVED 575
+FG D IDM ++ + H + L+G+ Y EK+ V+L+++
Sbjct: 564 LFGDEDAFIRIDM---SEYMEKHATSRLVGSPPGYVGHDEGGQLTEKVRRKPYSVILLDE 620
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P+ +++L DG T++ G+ +
Sbjct: 621 IEKAHPEVFNILLQVLEDGRLTDSKGRTV 649
>gi|312621967|ref|YP_004023580.1| ATPase AAA-2 domain-containing protein [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202434|gb|ADQ45761.1| ATPase AAA-2 domain protein [Caldicellulosiruptor kronotskyensis
2002]
Length = 829
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 27/148 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVL----VECKSAKKATW-FLLQGNDTIGKRRLALSIAES 532
L +VL V Q +++ ++ + V K K+ F+ G +GK LA ++AE+
Sbjct: 509 LEEVLHRRVVGQDEAVKAVARAIRRGRVGLKDPKRPIGSFIFLGPTGVGKTELARALAEA 568
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDI 576
+FG+ D + IDM + + + L+G+ Y EK+ VVL ++I
Sbjct: 569 LFGTEDAMIRIDMSEYMEKFNVSK--LIGSPPGYVGYEEGGQLTEKVRRRPYSVVLFDEI 626
Query: 577 DLADPQ----FIKILADGFETENFGKVI 600
+ A P ++IL DG T++ G+ +
Sbjct: 627 EKAHPDVFNLLLQILDDGRLTDSQGRTV 654
>gi|116492739|ref|YP_804474.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Pediococcus pentosaceus ATCC 25745]
gi|421893944|ref|ZP_16324436.1| putative ATP-dependent Clp protease ATP-binding subunit
[Pediococcus pentosaceus IE-3]
gi|116102889|gb|ABJ68032.1| ATP-binding subunit of Clp protease and DnaK/DnaJ chaperones
[Pediococcus pentosaceus ATCC 25745]
gi|385273105|emb|CCG89808.1| putative ATP-dependent Clp protease ATP-binding subunit
[Pediococcus pentosaceus IE-3]
Length = 704
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 19/108 (17%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND---------------GVSSHS 556
FL G +GK LA +A +FG D + +DM + +D G +S
Sbjct: 452 FLFVGPTGVGKTELAKQLALDMFGDKDAIIRLDMSEYSDRTAVSKLIGTSAGYVGYDDNS 511
Query: 557 EMLMGTLKNYEKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
L ++ +VL+++I+ ADPQ ++++ DG T+ G VI
Sbjct: 512 NTLTERVRRNPYSIVLLDEIEKADPQVLTLLLQVMDDGRLTDGQGNVI 559
>gi|78049792|ref|YP_365967.1| ClpB protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|78038222|emb|CAJ25967.1| ClpB protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
Length = 920
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 12/103 (11%)
Query: 35 FSSPCSPSSSEAHHFINPNTFWQNHAL------FSSQK------PASVSKEDIKLVFEVF 82
FS + + EA I P + AL ++Q P ++I+ V ++
Sbjct: 168 FSLGQTAAPGEASGAIAPAALGKQEALKKFTTDLTAQAREGKLDPIIGRDDEIRQVVDIL 227
Query: 83 LRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHV 125
+R+++ N ++VG+ A+V F R+ RGDVP LK +
Sbjct: 228 MRRRQNNPILVGETGVGKTAVVEGFAQRIARGDVPPALKDVQL 270
>gi|421784902|ref|ZP_16221337.1| ATP-dependent protease Clp, ATPase subunit [Serratia plymuthica
A30]
gi|407752908|gb|EKF63056.1| ATP-dependent protease Clp, ATPase subunit [Serratia plymuthica
A30]
Length = 924
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 76/162 (46%), Gaps = 29/162 (17%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDT 519
+EL+ + + ++ L+E V Q D++ ++ + + ++ + FL G
Sbjct: 577 TELTQEERKKLLNMEDKLRERVVGQDDAVEAVSDAVRLSRAGLSQAHRPIATFLFLGPTG 636
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EK 568
+GK LA +IAE+VFG + IDM ++ + H+ L+G Y E+
Sbjct: 637 VGKTELAKAIAETVFGDEQAIIRIDM---SEYMERHAVARLIGAPPGYVGYDEGGQLTER 693
Query: 569 L------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
+ V+L+++I+ A P +++ DG T+ G+V+
Sbjct: 694 VRRRPYSVILLDEIEKAHPDVYNVLLQVFDDGRLTDGKGRVV 735
>gi|323340922|ref|ZP_08081171.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Lactobacillus
ruminis ATCC 25644]
gi|417973502|ref|ZP_12614352.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
ruminis ATCC 25644]
gi|323091584|gb|EFZ34207.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Lactobacillus
ruminis ATCC 25644]
gi|346330050|gb|EGX98319.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
ruminis ATCC 25644]
Length = 699
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG D + +DM + +D + L+GT Y
Sbjct: 446 FLFVGPTGVGKTELAKQLALDMFGKKDAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 503
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ +VL+++I+ ADPQ I ++L DG T+ G +
Sbjct: 504 NSNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTV 553
>gi|218131111|ref|ZP_03459915.1| hypothetical protein BACEGG_02716 [Bacteroides eggerthii DSM 20697]
gi|217986631|gb|EEC52965.1| ATPase family associated with various cellular activities (AAA)
[Bacteroides eggerthii DSM 20697]
Length = 842
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 27/144 (18%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAESVFGS 536
LQ V Q +I + + ++ + K F+ G +GK LA +A+ +FGS
Sbjct: 539 LQAKVVAQDTAIEKLTKAILRSRVGLKDPNRPIGTFMFLGPTGVGKTHLAKQLAKYMFGS 598
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
+D L IDM + + + ++G Y EK+ +VL+++I+ A
Sbjct: 599 SDALIRIDMSEYMEKYTVSR--MIGAAPGYVGYEEGGQLTEKVRRKPYSIVLLDEIEKAH 656
Query: 581 PQ----FIKILADGFETENFGKVI 600
P +++L +G T+N+G+ I
Sbjct: 657 PDVFNILLQVLDEGRLTDNYGRTI 680
>gi|148544551|ref|YP_001271921.1| ATPase [Lactobacillus reuteri DSM 20016]
gi|184153912|ref|YP_001842253.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Lactobacillus
reuteri JCM 1112]
gi|227363667|ref|ZP_03847780.1| ATP-binding subunit of chaperone [Lactobacillus reuteri MM2-3]
gi|325682872|ref|ZP_08162388.1| ATP-dependent Clp protease [Lactobacillus reuteri MM4-1A]
gi|148531585|gb|ABQ83584.1| ATPase AAA-2 domain protein [Lactobacillus reuteri DSM 20016]
gi|183225256|dbj|BAG25773.1| ATP-dependent Clp protease ATP-binding subunit ClpE [Lactobacillus
reuteri JCM 1112]
gi|227071290|gb|EEI09600.1| ATP-binding subunit of chaperone [Lactobacillus reuteri MM2-3]
gi|324977222|gb|EGC14173.1| ATP-dependent Clp protease [Lactobacillus reuteri MM4-1A]
Length = 734
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 27/152 (17%)
Query: 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVEC-----KSAKKATWFLLQGNDTIGKRRLALS 528
Q DL K L E+V Q ++ + + KS + FL G +GK A
Sbjct: 425 QLRDLDKKLDEHVIGQAQAVDKVARAIRRNRIGLNKSGRPIGSFLFVGPTGVGKTETAKQ 484
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVL 572
+A +FGS D + DM + D S+ L+G Y E++ ++L
Sbjct: 485 LALQLFGSKDAMIRFDMSEYMDKTSTSK--LIGAAPGYVGYEEAGQLTEQVRRHPYSLIL 542
Query: 573 VEDIDLADP----QFIKILADGFETENFGKVI 600
+++++ A P F++IL DG T++ G+ +
Sbjct: 543 LDEVEKAHPDVMHMFLQILDDGRLTDSQGRTV 574
>gi|331092135|ref|ZP_08340965.1| hypothetical protein HMPREF9477_01608 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330401907|gb|EGG81481.1| hypothetical protein HMPREF9477_01608 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 817
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 79/157 (50%), Gaps = 31/157 (19%)
Query: 468 SDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGK 522
S++A+LQ+ D K+L + V Q +++ ++ + + + K FL G +GK
Sbjct: 495 SETARLQKLD--KILHKRVIGQEEAVVAVTKAVKRGRVGLKDPNRPIGSFLFLGPTGVGK 552
Query: 523 RRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL-- 569
L+ ++AE++FG+ + L +DM ++ + HS ++G+ Y EK+
Sbjct: 553 TELSKTLAEALFGNEEALIRVDM---SEYMEKHSVSKMIGSPPGYVGHDDGGQLSEKVRR 609
Query: 570 ----VVLVEDIDLADPQ----FIKILADGFETENFGK 598
V+L ++I+ A P +++L DG T++ G+
Sbjct: 610 NPYSVILFDEIEKAHPDVFNILLQVLDDGHITDSQGR 646
>gi|422857575|ref|ZP_16904225.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis SK1057]
gi|327462758|gb|EGF09080.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis SK1057]
Length = 712
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 29/132 (21%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ + + +DM + +D + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDMFGTKEAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ ++L+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 506 NSNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 565
Query: 605 KGDSSNYEERIE 616
YE +E
Sbjct: 566 SNAGFGYEAGLE 577
>gi|385839981|ref|YP_005863305.1| negative regulator of genetic competence [Lactobacillus salivarius
CECT 5713]
gi|300214102|gb|ADJ78518.1| Negative regulator of genetic competence [Lactobacillus salivarius
CECT 5713]
Length = 832
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 27/146 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAES 532
L K+L V Q +++ ++ + + +S K F+ G +GK LA ++AE+
Sbjct: 518 LEKILHNRVIGQDEAVKAVSKAIRRARSGLKDPTRPIGSFMFLGPTGVGKTELAKALAEA 577
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDI 576
+FGS D + IDM + + ++ L+G+ Y EK+ VVL++++
Sbjct: 578 MFGSEDSMIRIDMSEYMEKYTTSR--LIGSPPGYVGYDEGGQLTEKVRNNPYSVVLLDEV 635
Query: 577 DLADPQ----FIKILADGFETENFGK 598
+ A +++L DGF T++ G+
Sbjct: 636 EKAHNDVFNILLQVLDDGFLTDSKGR 661
>gi|227545480|ref|ZP_03975529.1| ATP-binding subunit of chaperone [Lactobacillus reuteri CF48-3A]
gi|338202703|ref|YP_004648848.1| ATP-dependent Clp protease [Lactobacillus reuteri SD2112]
gi|227184548|gb|EEI64619.1| ATP-binding subunit of chaperone [Lactobacillus reuteri CF48-3A]
gi|336447943|gb|AEI56558.1| ATP-dependent Clp protease [Lactobacillus reuteri SD2112]
Length = 734
Score = 42.0 bits (97), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 27/152 (17%)
Query: 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVEC-----KSAKKATWFLLQGNDTIGKRRLALS 528
Q DL K L E+V Q ++ + + KS + FL G +GK A
Sbjct: 425 QLRDLDKKLDEHVIGQTQAVDKVARAIRRNRIGLNKSGRPIGSFLFVGPTGVGKTETAKQ 484
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVL 572
+A +FGS D + DM + D S+ L+G Y E++ ++L
Sbjct: 485 LALQLFGSKDAMIRFDMSEYMDKTSTSK--LIGAAPGYVGYEEAGQLTEQVRRHPYSLIL 542
Query: 573 VEDIDLADP----QFIKILADGFETENFGKVI 600
+++++ A P F++IL DG T++ G+ +
Sbjct: 543 LDEVEKAHPDVMHMFLQILDDGRLTDSQGRTV 574
>gi|408528206|emb|CCK26380.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Streptomyces
davawensis JCM 4913]
Length = 851
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 68/146 (46%), Gaps = 23/146 (15%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAES 532
L + L E V Q +++ + E ++ ++ + FL G +GK LA ++AE+
Sbjct: 535 LEQHLHERVIGQDEAVQVVSEAVLRSRAGLASPDRPIGSFLFLGPTGVGKTELARALAEA 594
Query: 533 VFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDL 578
+FGS + + +DM + + G H E L ++ + ++L+++++
Sbjct: 595 LFGSEERMVRLDMSEYQERHTVSRLVGAPPGYVGHEEAGQLTEVVRRHPYSLLLLDEVEK 654
Query: 579 ADPQ----FIKILADGFETENFGKVI 600
A P +++L DG T+ G+ +
Sbjct: 655 AHPDVFNILLQVLDDGRLTDAQGRTV 680
>gi|422861538|ref|ZP_16908178.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis SK330]
gi|327468406|gb|EGF13891.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis SK330]
Length = 712
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 29/132 (21%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ + + +DM + +D + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDMFGTKEAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ ++L+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 506 NSNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 565
Query: 605 KGDSSNYEERIE 616
YE +E
Sbjct: 566 SNAGFGYEAGLE 577
>gi|227891885|ref|ZP_04009690.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Lactobacillus
salivarius ATCC 11741]
gi|227866348|gb|EEJ73769.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Lactobacillus
salivarius ATCC 11741]
Length = 832
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 27/146 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAES 532
L K+L V Q +++ ++ + + +S K F+ G +GK LA ++AE+
Sbjct: 518 LEKILHNRVIGQDEAVKAVSKAIRRARSGLKDPTRPIGSFMFLGPTGVGKTELAKALAEA 577
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDI 576
+FGS D + IDM + + ++ L+G+ Y EK+ VVL++++
Sbjct: 578 MFGSEDSMIRIDMSEYMEKYTTSR--LIGSPPGYVGYDEGGQLTEKVRNNPYSVVLLDEV 635
Query: 577 DLADPQ----FIKILADGFETENFGK 598
+ A +++L DGF T++ G+
Sbjct: 636 EKAHNDIFNILLQVLDDGFLTDSKGR 661
>gi|159040200|ref|YP_001539453.1| ATPase [Salinispora arenicola CNS-205]
gi|157919035|gb|ABW00463.1| ATPase AAA-2 domain protein [Salinispora arenicola CNS-205]
Length = 844
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 27/144 (18%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAESVFGS 536
L + V Q D++ ++ + + ++ K + F+ G +GK L+ ++AE +FGS
Sbjct: 511 LHKRVIGQEDAVKAVSKAIRRTRAGLKDPKRPSGSFIFAGPSGVGKTELSKALAEFLFGS 570
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDIDLAD 580
D L +DM + +D + L+G Y EK+ VVL ++I+ A
Sbjct: 571 EDALIQLDMSEFHDRYTVSR--LVGAPPGYVGYDEGGQLTEKVRRRPFSVVLFDEIEKAH 628
Query: 581 PQ----FIKILADGFETENFGKVI 600
P ++IL DG T+ G+++
Sbjct: 629 PDVFNTLLQILEDGRLTDGQGRIV 652
>gi|27467205|ref|NP_763842.1| endopeptidase [Staphylococcus epidermidis ATCC 12228]
gi|57866102|ref|YP_187761.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Staphylococcus epidermidis RP62A]
gi|242241856|ref|ZP_04796301.1| ClpB ATPase [Staphylococcus epidermidis W23144]
gi|293367900|ref|ZP_06614538.1| conserved hypothetical protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417658249|ref|ZP_12307885.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU045]
gi|417910375|ref|ZP_12554097.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU037]
gi|418604270|ref|ZP_13167628.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU041]
gi|418606457|ref|ZP_13169734.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU057]
gi|418609533|ref|ZP_13172675.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU065]
gi|418611880|ref|ZP_13174943.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU117]
gi|418626332|ref|ZP_13188945.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU126]
gi|420166780|ref|ZP_14673460.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM088]
gi|420175670|ref|ZP_14682104.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM061]
gi|420193494|ref|ZP_14699346.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM023]
gi|420196769|ref|ZP_14702508.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM020]
gi|420218753|ref|ZP_14723807.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH04008]
gi|420222653|ref|ZP_14727570.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH08001]
gi|420225510|ref|ZP_14730340.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH06004]
gi|420226413|ref|ZP_14731197.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH05003]
gi|420228732|ref|ZP_14733449.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH04003]
gi|420231100|ref|ZP_14735755.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH051668]
gi|81675398|sp|Q5HRM8.1|CLPC_STAEQ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
gi|81843102|sp|Q8CQ88.1|CLPC_STAES RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
gi|27314747|gb|AAO03884.1|AE016744_287 endopeptidase [Staphylococcus epidermidis ATCC 12228]
gi|57636760|gb|AAW53548.1| ATP-dependent Clp protease, ATP-binding subunit ClpC
[Staphylococcus epidermidis RP62A]
gi|242234634|gb|EES36946.1| ClpB ATPase [Staphylococcus epidermidis W23144]
gi|291317929|gb|EFE58337.1| conserved hypothetical protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329738043|gb|EGG74264.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU045]
gi|341650550|gb|EGS74370.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU037]
gi|374405287|gb|EHQ76229.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU041]
gi|374406860|gb|EHQ77735.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU065]
gi|374407864|gb|EHQ78709.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU057]
gi|374821395|gb|EHR85458.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU117]
gi|374832889|gb|EHR96592.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis VCU126]
gi|394232700|gb|EJD78313.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM088]
gi|394242848|gb|EJD88226.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM061]
gi|394259936|gb|EJE04764.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM023]
gi|394267271|gb|EJE11872.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIHLM020]
gi|394288915|gb|EJE32813.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH08001]
gi|394291827|gb|EJE35612.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH04008]
gi|394293577|gb|EJE37291.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH06004]
gi|394298789|gb|EJE42351.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH05003]
gi|394300195|gb|EJE43711.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH04003]
gi|394303175|gb|EJE46603.1| negative regulator of genetic competence ClpC/MecB [Staphylococcus
epidermidis NIH051668]
Length = 817
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L L + V Q D+++SI + + ++ K F+ G +GK LA ++AE
Sbjct: 501 NLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
S+FG D + +DM ++ + H+ L+G Y EK+ V+L +
Sbjct: 561 SMFGEDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFD 617
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P +++L DG T+ G+ +
Sbjct: 618 EIEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>gi|365174642|ref|ZP_09362082.1| ATP-dependent chaperone ClpB [Synergistes sp. 3_1_syn1]
gi|363614439|gb|EHL65933.1| ATP-dependent chaperone ClpB [Synergistes sp. 3_1_syn1]
Length = 882
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 23/146 (15%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L VL E V Q +++ + + ++ +S K F+ G +GK LA ++AES
Sbjct: 579 LDAVLHERVVGQDEAVSLVADAVLRARSGIKDPKRPIGSFIFLGPTGVGKTELARALAES 638
Query: 533 VFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDL 578
+F S D + IDM + + G + E L ++ + VVL ++I+
Sbjct: 639 LFDSEDNIVRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEAVRRHPYSVVLFDEIEK 698
Query: 579 ADPQ----FIKILADGFETENFGKVI 600
A P ++IL DG T++ G+ +
Sbjct: 699 AHPDVFNIMLQILDDGRVTDSHGRTV 724
>gi|319649805|ref|ZP_08003958.1| ATP-dependent Clp protease-like protein [Bacillus sp. 2_A_57_CT2]
gi|317398559|gb|EFV79244.1| ATP-dependent Clp protease-like protein [Bacillus sp. 2_A_57_CT2]
Length = 714
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 81/181 (44%), Gaps = 25/181 (13%)
Query: 443 PRLDSLKSNEGKEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVE 502
P +D E E K + +G + K+Q +L + L E V Q +++ + + +
Sbjct: 385 PVIDVSHIQEIIEKKTGIPVGKLAEDEQEKMQ--NLEESLAEKVIGQAEAVQKVSKAIRR 442
Query: 503 CKSAKKAT-----WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------- 550
++ K+ FL G +GK L ++A+ +FGS + + +DM + +
Sbjct: 443 SRAGLKSKDRPIGSFLFVGPTGVGKTELTKTLAQELFGSKESMIRLDMSEYMEKHSVSKI 502
Query: 551 -----GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADP----QFIKILADGFETENFGKV 599
G H E L ++ ++L+++I+ A P F++IL DG T++ G+
Sbjct: 503 IGSPPGYVGHEEAGQLTEKVRRNPYSIILLDEIEKAHPDVQHMFLQILEDGRLTDSQGRT 562
Query: 600 I 600
+
Sbjct: 563 V 563
>gi|311029019|ref|ZP_07707109.1| class III stress response-related ATPase, AAA+ superfamily protein
[Bacillus sp. m3-13]
Length = 812
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 24/110 (21%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY---- 566
F+ G +GK LA ++AES+FG D + IDM ++ + HS L+G+ Y
Sbjct: 543 FIFLGPTGVGKTELARALAESIFGDEDAMIRIDM---SEYMEKHSTSRLVGSPPGYVGYD 599
Query: 567 ------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ V+L+++I+ A P +++L DG T++ G+ +
Sbjct: 600 EGGQLTEKVRRKPYSVILLDEIEKAHPDVFNILLQVLEDGRLTDSKGRTV 649
>gi|90961178|ref|YP_535094.1| negative regulator of genetic competence [Lactobacillus salivarius
UCC118]
gi|90820372|gb|ABD99011.1| Negative regulator of genetic competence [Lactobacillus salivarius
UCC118]
Length = 830
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 27/146 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAES 532
L K+L V Q +++ ++ + + +S K F+ G +GK LA ++AE+
Sbjct: 516 LEKILHNRVIGQDEAVKAVSKAIRRARSGLKDPTRPIGSFMFLGPTGVGKTELAKALAEA 575
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDI 576
+FGS D + IDM + + ++ L+G+ Y EK+ VVL++++
Sbjct: 576 MFGSEDSMIRIDMSEYMEKYTTSR--LIGSPPGYVGYDEGGQLTEKVRNNPYSVVLLDEV 633
Query: 577 DLADPQ----FIKILADGFETENFGK 598
+ A +++L DGF T++ G+
Sbjct: 634 EKAHNDVFNILLQVLDDGFLTDSKGR 659
>gi|418960617|ref|ZP_13512504.1| negative regulator of genetic competence [Lactobacillus salivarius
SMXD51]
gi|380344284|gb|EIA32630.1| negative regulator of genetic competence [Lactobacillus salivarius
SMXD51]
Length = 832
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 27/146 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAES 532
L K+L V Q +++ ++ + + +S K F+ G +GK LA ++AE+
Sbjct: 518 LEKILHNRVIGQDEAVKAVSKAIRRARSGLKDPTRPIGSFMFLGPTGVGKTELAKALAEA 577
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDI 576
+FGS D + IDM + + ++ L+G+ Y EK+ VVL++++
Sbjct: 578 MFGSEDSMIRIDMSEYMEKYTTSR--LIGSPPGYVGYDEGGQLTEKVRNNPYSVVLLDEV 635
Query: 577 DLADPQ----FIKILADGFETENFGK 598
+ A +++L DGF T++ G+
Sbjct: 636 EKAHNDVFNILLQVLDDGFLTDSKGR 661
>gi|301299458|ref|ZP_07205734.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactobacillus
salivarius ACS-116-V-Col5a]
gi|300852940|gb|EFK80548.1| ATP-dependent Clp protease ATP-binding subunit ClpC [Lactobacillus
salivarius ACS-116-V-Col5a]
Length = 830
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 27/146 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAES 532
L K+L V Q +++ ++ + + +S K F+ G +GK LA ++AE+
Sbjct: 516 LEKILHNRVIGQDEAVKAVSKAIRRARSGLKDPTRPIGSFMFLGPTGVGKTELAKALAEA 575
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDI 576
+FGS D + IDM + + ++ L+G+ Y EK+ VVL++++
Sbjct: 576 MFGSEDSMIRIDMSEYMEKYTTSR--LIGSPPGYVGYDEGGQLTEKVRNNPYSVVLLDEV 633
Query: 577 DLADPQ----FIKILADGFETENFGK 598
+ A +++L DGF T++ G+
Sbjct: 634 EKAHNDVFNILLQVLDDGFLTDSKGR 659
>gi|194466802|ref|ZP_03072789.1| ATPase AAA-2 domain protein [Lactobacillus reuteri 100-23]
gi|194453838|gb|EDX42735.1| ATPase AAA-2 domain protein [Lactobacillus reuteri 100-23]
Length = 734
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 27/152 (17%)
Query: 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVEC-----KSAKKATWFLLQGNDTIGKRRLALS 528
Q DL K L E+V Q ++ + + KS + FL G +GK A
Sbjct: 425 QLRDLDKKLDEHVIGQTQAVDKVARAIRRNRIGLNKSGRPIGSFLFVGPTGVGKTETAKQ 484
Query: 529 IAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVL 572
+A +FGS D + DM + D S+ L+G Y E++ ++L
Sbjct: 485 LALQLFGSKDAMIRFDMSEYMDKTSTSK--LIGAAPGYVGYEEAGQLTEQVRRHPYSLIL 542
Query: 573 VEDIDLADP----QFIKILADGFETENFGKVI 600
+++++ A P F++IL DG T++ G+ +
Sbjct: 543 LDEVEKAHPDVMHMFLQILDDGRLTDSQGRTV 574
>gi|323350544|ref|ZP_08086206.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis VMC66]
gi|322123226|gb|EFX94911.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis VMC66]
Length = 712
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 29/132 (21%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ + + +DM + +D + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDMFGTKEAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ ++L+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 506 NSNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 565
Query: 605 KGDSSNYEERIE 616
YE +E
Sbjct: 566 SNAGFGYEAGLE 577
>gi|291546937|emb|CBL20045.1| ATPases with chaperone activity, ATP-binding subunit [Ruminococcus
sp. SR1/5]
Length = 821
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 81/170 (47%), Gaps = 35/170 (20%)
Query: 467 LSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK-----SAKKATWFLLQGNDTIG 521
L++ + ++L KVL++ V Q +++ ++ + + A+ FL G +G
Sbjct: 499 LTEGESRRLANLEKVLKKRVIGQDEAVSAVARAVKRGRVGLKDPARPIGSFLFLGPTGVG 558
Query: 522 KRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL- 569
K L+ ++AE+VFGS + +DM ++ + HS ++G+ Y EK+
Sbjct: 559 KTELSKALAEAVFGSEQAMIRVDM---SEYMEKHSVSKMIGSPPGYVGYEEGGQLSEKVR 615
Query: 570 -----VVLVEDIDLADPQ----FIKILADGFETE------NFGKVIFVLT 604
V+L ++I+ A P +++L DG T+ +F + I ++T
Sbjct: 616 RNPYSVILFDEIEKAHPDVFNILLQVLDDGHITDAQGRKVDFKQTIIIMT 665
>gi|260662570|ref|ZP_05863465.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
fermentum 28-3-CHN]
gi|260553261|gb|EEX26204.1| ATP-dependent Clp protease ATP-binding subunit [Lactobacillus
fermentum 28-3-CHN]
Length = 697
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 19/108 (17%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND---------------GVSSHS 556
FL G +GK LA +A +FGST+ + +DM + D G +S
Sbjct: 447 FLFVGPTGVGKTELAKQLALDMFGSTNDIIRLDMSEYTDRTAVSKLIGTTAGYVGYDDNS 506
Query: 557 EMLMGTLKNYEKLVVLVEDIDLADPQFI----KILADGFETENFGKVI 600
L ++ + +VL+++I+ A+PQ I ++L DG T+ G +
Sbjct: 507 NTLTEKVRRHPYSIVLLDEIEKANPQVITLLLQVLDDGRLTDGQGNTV 554
>gi|212691841|ref|ZP_03299969.1| hypothetical protein BACDOR_01336 [Bacteroides dorei DSM 17855]
gi|237708047|ref|ZP_04538528.1| endopeptidase subunit Clp ATP-binding B [Bacteroides sp. 9_1_42FAA]
gi|423241999|ref|ZP_17223110.1| chaperone ClpB [Bacteroides dorei CL03T12C01]
gi|212665597|gb|EEB26169.1| ATP-dependent chaperone protein ClpB [Bacteroides dorei DSM 17855]
gi|229457875|gb|EEO63596.1| endopeptidase subunit Clp ATP-binding B [Bacteroides sp. 9_1_42FAA]
gi|392640228|gb|EIY34033.1| chaperone ClpB [Bacteroides dorei CL03T12C01]
Length = 862
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 4/138 (2%)
Query: 39 CSPSSSEAHHFINPNTFWQNHALFSSQ-KPASVSKEDIKLVFEVFLRKKRRNTVIVGDCL 97
S SS + + ++ N A S + P E+I+ V ++ R+ + N +++G+
Sbjct: 148 TSQSSEDTYQSLSKYAINLNEAARSGKLDPVIGRDEEIRRVLQILSRRTKNNPILIGEPG 207
Query: 98 SITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSL 157
+ A+V R+ RGDVP LK + + K E E LK V+ +
Sbjct: 208 TGKTAIVEGLAHRIIRGDVPDNLKNKQIFSLDMGALVAGAKYKGEFE---ERLKSVVNEV 264
Query: 158 TSVGGGAIIYTGDLKWTV 175
G I++ ++ V
Sbjct: 265 VKAEGSIILFIDEIHTLV 282
>gi|417787245|ref|ZP_12434928.1| ATP-dependent Clp protease, ATP-binding subunit clpC [Lactobacillus
salivarius NIAS840]
gi|334307422|gb|EGL98408.1| ATP-dependent Clp protease, ATP-binding subunit clpC [Lactobacillus
salivarius NIAS840]
Length = 832
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 27/146 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKKATW-----FLLQGNDTIGKRRLALSIAES 532
L K+L V Q +++ ++ + + +S K F+ G +GK LA ++AE+
Sbjct: 518 LEKILHNRVIGQDEAVKAVSKAIRRARSGLKDPTRPIGSFMFLGPTGVGKTELAKALAEA 577
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDI 576
+FGS D + IDM + + ++ L+G+ Y EK+ VVL++++
Sbjct: 578 MFGSEDSMIRIDMSEYMEKYTTSR--LIGSPPGYVGYDEGGQLTEKVRNNPYSVVLLDEV 635
Query: 577 DLADPQ----FIKILADGFETENFGK 598
+ A +++L DGF T++ G+
Sbjct: 636 EKAHNDVFNILLQVLDDGFLTDSKGR 661
>gi|422884905|ref|ZP_16931353.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis SK49]
gi|332359335|gb|EGJ37156.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis SK49]
Length = 712
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 29/132 (21%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ + + +DM + +D + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDMFGTKEAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ ++L+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 506 NNNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 565
Query: 605 KGDSSNYEERIE 616
YE +E
Sbjct: 566 SNAGFGYEAGLE 577
>gi|422822496|ref|ZP_16870689.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis SK353]
gi|324989766|gb|EGC21709.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis SK353]
Length = 712
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 29/132 (21%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ + + +DM + +D + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDMFGTKEAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ ++L+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 506 NNNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 565
Query: 605 KGDSSNYEERIE 616
YE +E
Sbjct: 566 SNAGFGYEAGLE 577
>gi|265756195|ref|ZP_06090524.1| ATP-dependent chaperone ClpB [Bacteroides sp. 3_1_33FAA]
gi|345516500|ref|ZP_08795990.1| chaperone ClpB [Bacteroides dorei 5_1_36/D4]
gi|423232186|ref|ZP_17218588.1| chaperone ClpB [Bacteroides dorei CL02T00C15]
gi|423246737|ref|ZP_17227790.1| chaperone ClpB [Bacteroides dorei CL02T12C06]
gi|229436999|gb|EEO47076.1| chaperone ClpB [Bacteroides dorei 5_1_36/D4]
gi|263233786|gb|EEZ19395.1| ATP-dependent chaperone ClpB [Bacteroides sp. 3_1_33FAA]
gi|392625250|gb|EIY19321.1| chaperone ClpB [Bacteroides dorei CL02T00C15]
gi|392634713|gb|EIY28627.1| chaperone ClpB [Bacteroides dorei CL02T12C06]
Length = 862
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 4/138 (2%)
Query: 39 CSPSSSEAHHFINPNTFWQNHALFSSQ-KPASVSKEDIKLVFEVFLRKKRRNTVIVGDCL 97
S SS + + ++ N A S + P E+I+ V ++ R+ + N +++G+
Sbjct: 148 TSQSSEDTYQSLSKYAINLNEAARSGKLDPVIGRDEEIRRVLQILSRRTKNNPILIGEPG 207
Query: 98 SITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSL 157
+ A+V R+ RGDVP LK + + K E E LK V+ +
Sbjct: 208 TGKTAIVEGLAHRIIRGDVPDNLKNKQIFSLDMGALVAGAKYKGEFE---ERLKSVVNEV 264
Query: 158 TSVGGGAIIYTGDLKWTV 175
G I++ ++ V
Sbjct: 265 VKAEGSIILFIDEIHTLV 282
>gi|406909140|gb|EKD49459.1| hypothetical protein ACD_63C00138G0006, partial [uncultured
bacterium]
Length = 870
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 89/212 (41%), Gaps = 43/212 (20%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAESVFGS 536
L V Q +++ ++ E + ++ K F+ G +GK LA ++AE VFG+
Sbjct: 555 LHARVIGQNEAVQAVAEAVRRGRAGLKDPNRPIGSFIFLGPTGVGKTELARALAEQVFGN 614
Query: 537 TDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVEDIDLA 579
D + +DM ++ + HS L G+ Y EK+ V+L+++I+ A
Sbjct: 615 EDTIIRVDM---SEYMEQHSVAKLTGSPPGYVGYEEGGQLTEKVRRKPYSVILLDEIEKA 671
Query: 580 DPQ----FIKILADGFETENFGK-------VIFVLTKGDSSNYEERIENQDSVINMTLKV 628
P ++IL DG T+ G+ +I + S +E E + I KV
Sbjct: 672 HPDVFNILLQILDDGRLTDAKGRAVDFKNTIIIATSNIGSQRIQEVTEGR---IGFDDKV 728
Query: 629 NERNQNFDHKRKAEWEFANKTKSP----RIDE 656
ER + D R KT P R+DE
Sbjct: 729 KERKADKDELRVELMGELKKTFRPEFLNRVDE 760
>gi|422847599|ref|ZP_16894282.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis SK72]
gi|325686597|gb|EGD28623.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis SK72]
Length = 712
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 29/132 (21%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ + + +DM + +D + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDMFGTKEAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ ++L+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 506 NNNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 565
Query: 605 KGDSSNYEERIE 616
YE +E
Sbjct: 566 SNAGFGYEAGLE 577
>gi|222529809|ref|YP_002573691.1| ATPase AAA-2 domain-containing protein [Caldicellulosiruptor bescii
DSM 6725]
gi|222456656|gb|ACM60918.1| ATPase AAA-2 domain protein [Caldicellulosiruptor bescii DSM 6725]
Length = 829
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 27/148 (18%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVL----VECKSAKKATW-FLLQGNDTIGKRRLALSIAES 532
L +VL V Q +++ ++ + V K K+ F+ G +GK LA ++AE+
Sbjct: 509 LEEVLHRRVVGQDEAVKAVARAIRRGRVGLKDPKRPIGSFIFLGPTGVGKTELARALAEA 568
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----------EKL------VVLVEDI 576
+FG+ D + IDM + + + L+G+ Y EK+ VVL ++I
Sbjct: 569 LFGTEDAMIRIDMSEYMEKFNVSK--LIGSPPGYVGYEEGGQLTEKVRRRPYSVVLFDEI 626
Query: 577 DLADPQ----FIKILADGFETENFGKVI 600
+ A P ++IL DG T++ G+ +
Sbjct: 627 EKAHPDVFNLLLQILDDGRLTDSQGRTV 654
>gi|70727483|ref|YP_254399.1| endopeptidase Clp ATP-binding subunit C [Staphylococcus
haemolyticus JCSC1435]
gi|122063324|sp|Q4L3I4.1|CLPC_STAHJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpC
gi|68448209|dbj|BAE05793.1| endopeptidas Clp ATP-binding chain C [Staphylococcus haemolyticus
JCSC1435]
Length = 824
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 23/147 (15%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L + L + V Q D++ SI + + ++ K F+ G +GK LA ++AE
Sbjct: 501 NLEQTLHDRVIGQNDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDID 577
S+FG D + +DM + + G H E L ++ V+L ++I+
Sbjct: 561 SMFGEEDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDEGGQLTEKVRRKPYSVILFDEIE 620
Query: 578 LADPQ----FIKILADGFETENFGKVI 600
A P +++L DG T+ G+ +
Sbjct: 621 KAHPDVFNILLQVLDDGHLTDTKGRQV 647
>gi|406901042|gb|EKD43812.1| ATP-dependent Clp protease ATPase subunit, partial [uncultured
bacterium]
Length = 523
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 19/138 (13%)
Query: 482 LQENVPWQFDSIHSIVEVL----VECKSAKKATW-FLLQGNDTIGKRRLALSIAESVFGS 536
+ + V Q +++ + L E +S+K+ FL G +GK LA +IAE FG
Sbjct: 236 MHKRVIGQVEAVDLVANALRRARAEIRSSKRPIANFLFLGPTGVGKTELAKTIAEIYFGG 295
Query: 537 TDLLFHIDMRKRNDGVSSH----------SEMLMGTLKNYEKLVVLVEDIDLADPQ---- 582
+ + +DM + D S + S ML ++ ++L+++++ AD
Sbjct: 296 EERMVRLDMSEYQDKSSIYRLIGTPGEKGSGMLTEAIRRSPFSLLLLDEMEKADKDILNL 355
Query: 583 FIKILADGFETENFGKVI 600
F++++ DG T++ G+V+
Sbjct: 356 FLQVMDDGRLTDSVGRVV 373
>gi|422877348|ref|ZP_16923818.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis SK1056]
gi|332359987|gb|EGJ37801.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis SK1056]
Length = 712
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 29/132 (21%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ + + +DM + +D + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDMFGTKEAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ ++L+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 506 NNNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 565
Query: 605 KGDSSNYEERIE 616
YE +E
Sbjct: 566 SNAGFGYEAGLE 577
>gi|401682512|ref|ZP_10814403.1| ATPase, AAA family [Streptococcus sp. AS14]
gi|422853404|ref|ZP_16900068.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis SK160]
gi|422856553|ref|ZP_16903209.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis SK1]
gi|422866385|ref|ZP_16913010.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis SK1058]
gi|325697416|gb|EGD39302.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis SK160]
gi|327460724|gb|EGF07059.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis SK1]
gi|327488808|gb|EGF20607.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis SK1058]
gi|400184163|gb|EJO18408.1| ATPase, AAA family [Streptococcus sp. AS14]
Length = 712
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 29/132 (21%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ + + +DM + +D + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDMFGTKEAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ ++L+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 506 NNNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 565
Query: 605 KGDSSNYEERIE 616
YE +E
Sbjct: 566 SNAGFGYEAGLE 577
>gi|422825468|ref|ZP_16873647.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis SK678]
gi|324995970|gb|EGC27881.1| ATP-dependent Clp protease, ATP-binding subunit ClpL [Streptococcus
sanguinis SK678]
Length = 712
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 29/132 (21%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ + + +DM + +D + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDMFGTKEAIIRLDMSEYSDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETE------NFGKVIFVLT 604
E++ ++L+++I+ ADPQ I ++L DG T+ NF + + T
Sbjct: 506 NNNTLTERVRRNPYSIILLDEIEKADPQVITLLLQVLDDGRLTDGQGNTVNFKNTVIIAT 565
Query: 605 KGDSSNYEERIE 616
YE +E
Sbjct: 566 SNAGFGYEAGLE 577
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,956,047,501
Number of Sequences: 23463169
Number of extensions: 540753035
Number of successful extensions: 1585415
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 2715
Number of HSP's that attempted gapping in prelim test: 1581826
Number of HSP's gapped (non-prelim): 5985
length of query: 850
length of database: 8,064,228,071
effective HSP length: 152
effective length of query: 698
effective length of database: 8,792,793,679
effective search space: 6137369987942
effective search space used: 6137369987942
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 82 (36.2 bits)