BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003070
(850 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5XCL7|CLPC_STRP6 Probable ATP-dependent Clp protease ATP-binding subunit
OS=Streptococcus pyogenes serotype M6 (strain ATCC
BAA-946 / MGAS10394) GN=clpC PE=1 SV=1
Length = 699
Score = 46.6 bits (109), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FGS D + +DM + ND + L+GT Y
Sbjct: 448 FLFVGPTGVGKTELAKQLALDLFGSKDAIIRLDMSEYNDRTAVSK--LIGTTAGYVGYDD 505
Query: 567 ------EKL------VVLVEDIDLADPQFI----KILADGFETENFGKVI 600
E++ +VL+++I+ ADPQ I ++L DG T+ G I
Sbjct: 506 NNNTLTERVRRNPYAIVLLDEIEKADPQIITLLLQVLDDGRLTDGQGNTI 555
>sp|Q6GBW3|CLPC_STAAS ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3
SV=1
Length = 818
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>sp|Q6GJE4|CLPC_STAAR ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3
SV=1
Length = 818
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>sp|Q7A797|CLPC_STAAN ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain N315) GN=clpC PE=1 SV=1
Length = 818
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>sp|Q99W78|CLPC_STAAM ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=clpC PE=1 SV=1
Length = 818
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>sp|P0C281|CLPC_STAAC ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain COL) GN=clpC PE=3 SV=1
Length = 818
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>sp|Q2G0P5|CLPC_STAA8 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain NCTC 8325) GN=clpC PE=1
SV=1
Length = 818
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>sp|Q2FJB5|CLPC_STAA3 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain USA300) GN=clpC PE=3
SV=1
Length = 818
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>sp|Q2YSD6|CLPC_STAAB ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
GN=clpC PE=3 SV=1
Length = 818
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>sp|Q8EU05|CLPB_OCEIH Chaperone protein ClpB OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=clpB PE=3
SV=1
Length = 809
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 75/150 (50%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
++ K+L + V Q ++++++ + + ++ K F+ G +GK LA ++AE
Sbjct: 504 NMEKILHDRVIGQSEAVNAVAKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 563
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSH-SEMLMGTLKNY----------EKL------VVLVE 574
+F D + IDM ++ + H + L+G+ Y EK+ VVL++
Sbjct: 564 VMFADEDAMIRIDM---SEYMERHATSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLD 620
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+++ A P+ +++L DG T++ G+V+
Sbjct: 621 EVEKAHPEVFNILLQVLEDGRLTDSKGRVV 650
>sp|Q8NXY8|CLPC_STAAW ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1
Length = 818
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 29/149 (19%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L L E V Q D+++SI + + ++ K F+ G +GK LA ++AES
Sbjct: 502 LEDTLHERVIGQKDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 561
Query: 533 VFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVED 575
+FG D + +DM ++ + H+ L+G Y EK+ V+L ++
Sbjct: 562 MFGDDDAMIRVDM---SEFMEKHAVSRLVGAPLGYVGHDDGGQLTEKVRRKPYSVILFDE 618
Query: 576 IDLADPQ----FIKILADGFETENFGKVI 600
I+ A P +++L DG T+ G+ +
Sbjct: 619 IEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>sp|Q8CQ88|CLPC_STAES ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus epidermidis (strain ATCC 12228)
GN=clpC PE=3 SV=1
Length = 817
Score = 41.6 bits (96), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L L + V Q D+++SI + + ++ K F+ G +GK LA ++AE
Sbjct: 501 NLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
S+FG D + +DM ++ + H+ L+G Y EK+ V+L +
Sbjct: 561 SMFGEDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFD 617
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P +++L DG T+ G+ +
Sbjct: 618 EIEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>sp|Q5HRM8|CLPC_STAEQ ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=clpC PE=3 SV=1
Length = 817
Score = 41.6 bits (96), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L L + V Q D+++SI + + ++ K F+ G +GK LA ++AE
Sbjct: 501 NLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
S+FG D + +DM ++ + H+ L+G Y EK+ V+L +
Sbjct: 561 SMFGEDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFD 617
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P +++L DG T+ G+ +
Sbjct: 618 EIEKAHPDVFNILLQVLDDGHLTDTKGRTV 647
>sp|Q4L3I4|CLPC_STAHJ ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC
PE=3 SV=1
Length = 824
Score = 41.6 bits (96), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 23/147 (15%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L + L + V Q D++ SI + + ++ K F+ G +GK LA ++AE
Sbjct: 501 NLEQTLHDRVIGQNDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDID 577
S+FG D + +DM + + G H E L ++ V+L ++I+
Sbjct: 561 SMFGEEDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDEGGQLTEKVRRKPYSVILFDEIE 620
Query: 578 LADPQ----FIKILADGFETENFGKVI 600
A P +++L DG T+ G+ +
Sbjct: 621 KAHPDVFNILLQVLDDGHLTDTKGRQV 647
>sp|Q06716|CLPL_LACLL ATP-dependent Clp protease ATP-binding subunit ClpL OS=Lactococcus
lactis subsp. lactis GN=clpL PE=3 SV=1
Length = 763
Score = 41.6 bits (96), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK L+ ++A +FG+ + LF IDM + D + L+GT Y
Sbjct: 507 FLFVGPTGVGKTELSQALALDMFGNENALFGIDMSEYADRTAVSK--LIGTSAGYVGYED 564
Query: 567 ------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
E++ V+L+++I+ ADPQ ++++ DG T+ G VI
Sbjct: 565 NANTLTERVRRNPYSVILLDEIEKADPQVLTLLLQVMDDGRLTDGQGSVI 614
>sp|Q9CI09|CLPE_LACLA ATP-dependent Clp protease ATP-binding subunit ClpE OS=Lactococcus
lactis subsp. lactis (strain IL1403) GN=clpE PE=3 SV=1
Length = 748
Score = 41.2 bits (95), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 9/147 (6%)
Query: 18 SSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQN---HALFSSQKPASVSKED 74
+ A+S T +GG P +P + + + F N A P E+
Sbjct: 75 NGAASTQTPPTQTGGRGPRGPQNPRAKQPKGMLE--EFGINITESARRGEIDPVIGRDEE 132
Query: 75 IKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVT 134
IK V E+ R+ + N V++G+ A+V ++ GDVPQ+L+ VI+ +
Sbjct: 133 IKRVIEILNRRTKNNPVLIGEPGVGKTAVVEGLAQKIVDGDVPQKLQNKEVIRLDVVSLV 192
Query: 135 ----LRFMKKEEVEMNLTELKRKVDSL 157
+R +E ++ + E++++ D +
Sbjct: 193 QGTGIRGQFEERMQKLMDEIRKRNDVI 219
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 29/162 (17%)
Query: 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVEC-----KSAKKATWFLLQGNDT 519
+L + + Q +L L+ +V Q +++ I + + K + FL G
Sbjct: 425 GDLKEKEQTQLINLADDLKAHVIGQDEAVDKIAKAIRRSRVGLGKPNRPIGSFLFVGPTG 484
Query: 520 IGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EK 568
+GK LA +A+ +FGS++ + DM ++ + HS L+G Y E+
Sbjct: 485 VGKTELAKQLAKELFGSSESMIRFDM---SEYMEKHSVAKLIGAPPGYVGYEEAGQLTER 541
Query: 569 L------VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
+ ++L+++I+ A P F++IL DG T+ G+ +
Sbjct: 542 VRRNPYSLILLDEIEKAHPDVMHMFLQILEDGRLTDAQGRTV 583
>sp|O31673|CLPE_BACSU ATP-dependent Clp protease ATP-binding subunit ClpE OS=Bacillus
subtilis (strain 168) GN=clpE PE=1 SV=1
Length = 699
Score = 40.8 bits (94), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 77/169 (45%), Gaps = 25/169 (14%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKAT---- 510
E K + +G + + K++ +L L E V Q ++ + + + ++ K+
Sbjct: 382 EQKTGIPVGKLQADEQTKMK--ELEAKLHERVIGQEAAVQKVAKAVRRSRAGLKSKNRPV 439
Query: 511 -WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE 557
FL G +GK L+ ++A+ +FG+ D + +DM + + G H E
Sbjct: 440 GSFLFVGPTGVGKTELSKTLADELFGTKDAIIRLDMSEYMEKHAVSKIIGSPPGYVGHEE 499
Query: 558 --MLMGTLKNYEKLVVLVEDIDLADP----QFIKILADGFETENFGKVI 600
L ++ +VL+++I+ A P F++I+ DG T++ G+ +
Sbjct: 500 AGQLTEKVRRNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTV 548
>sp|Q2FDV8|CLPL_STAA3 ATP-dependent Clp protease ATP-binding subunit ClpL
OS=Staphylococcus aureus (strain USA300) GN=clpL PE=3
SV=1
Length = 701
Score = 40.8 bits (94), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ D L +DM + +D ++ ++GT Y
Sbjct: 453 FLFVGPTGVGKTELAKQLAIDLFGNKDALIRLDMSEYSD--TTAVSKMIGTTAGYVGYDD 510
Query: 567 ------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ V+L ++I+ A+PQ ++++ DG T+ G VI
Sbjct: 511 NSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVI 560
>sp|Q8NUR7|CLPL_STAAW ATP-dependent Clp protease ATP-binding subunit ClpL
OS=Staphylococcus aureus (strain MW2) GN=clpL PE=3 SV=1
Length = 701
Score = 40.8 bits (94), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ D L +DM + +D ++ ++GT Y
Sbjct: 453 FLFVGPTGVGKTELAKQLAIDLFGNKDALIRLDMSEYSD--TTAVSKMIGTTAGYVGYDD 510
Query: 567 ------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ V+L ++I+ A+PQ ++++ DG T+ G VI
Sbjct: 511 NSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVI 560
>sp|Q6G6C6|CLPL_STAAS ATP-dependent Clp protease ATP-binding subunit ClpL
OS=Staphylococcus aureus (strain MSSA476) GN=clpL PE=3
SV=1
Length = 701
Score = 40.8 bits (94), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ D L +DM + +D ++ ++GT Y
Sbjct: 453 FLFVGPTGVGKTELAKQLAIDLFGNKDALIRLDMSEYSD--TTAVSKMIGTTAGYVGYDD 510
Query: 567 ------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ V+L ++I+ A+PQ ++++ DG T+ G VI
Sbjct: 511 NSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVI 560
>sp|Q7A3F4|CLPL_STAAN ATP-dependent Clp protease ATP-binding subunit ClpL
OS=Staphylococcus aureus (strain N315) GN=clpL PE=1 SV=1
Length = 701
Score = 40.8 bits (94), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ D L +DM + +D ++ ++GT Y
Sbjct: 453 FLFVGPTGVGKTELAKQLAIDLFGNKDALIRLDMSEYSD--TTAVSKMIGTTAGYVGYDD 510
Query: 567 ------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ V+L ++I+ A+PQ ++++ DG T+ G VI
Sbjct: 511 NSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVI 560
>sp|Q99R88|CLPL_STAAM ATP-dependent Clp protease ATP-binding subunit ClpL
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=clpL PE=1 SV=1
Length = 701
Score = 40.8 bits (94), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ D L +DM + +D ++ ++GT Y
Sbjct: 453 FLFVGPTGVGKTELAKQLAIDLFGNKDALIRLDMSEYSD--TTAVSKMIGTTAGYVGYDD 510
Query: 567 ------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ V+L ++I+ A+PQ ++++ DG T+ G VI
Sbjct: 511 NSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVI 560
>sp|Q5HD02|CLPL_STAAC ATP-dependent Clp protease ATP-binding subunit ClpL
OS=Staphylococcus aureus (strain COL) GN=clpL PE=3 SV=1
Length = 701
Score = 40.8 bits (94), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ D L +DM + +D ++ ++GT Y
Sbjct: 453 FLFVGPTGVGKTELAKQLAIDLFGNKDALIRLDMSEYSD--TTAVSKMIGTTAGYVGYDD 510
Query: 567 ------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ V+L ++I+ A+PQ ++++ DG T+ G VI
Sbjct: 511 NSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVI 560
>sp|Q2FV74|CLPL_STAA8 ATP-dependent Clp protease ATP-binding subunit ClpL
OS=Staphylococcus aureus (strain NCTC 8325) GN=clpL PE=2
SV=1
Length = 701
Score = 40.8 bits (94), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ D L +DM + +D ++ ++GT Y
Sbjct: 453 FLFVGPTGVGKTELAKQLAIDLFGNKDALIRLDMSEYSD--TTAVSKMIGTTAGYVGYDD 510
Query: 567 ------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ V+L ++I+ A+PQ ++++ DG T+ G VI
Sbjct: 511 NSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVI 560
>sp|Q9S5Z2|CLPE_LACLM ATP-dependent Clp protease ATP-binding subunit ClpE OS=Lactococcus
lactis subsp. cremoris (strain MG1363) GN=clpE PE=1 SV=2
Length = 748
Score = 40.8 bits (94), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 28 TSSGGGVFSSPCSPSSSEAHHFINPNTFWQN---HALFSSQKPASVSKEDIKLVFEVFLR 84
T +GG P +P + + + F N A P E+IK V E+ R
Sbjct: 85 TQTGGRGPRGPQNPRAKQPKGMLE--EFGINITESARRGEIDPVIGRDEEIKRVIEILNR 142
Query: 85 KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVT----LRFMKK 140
+ + N V++G+ A+V ++ GDVPQ+L+ VI+ + +R +
Sbjct: 143 RTKNNPVLIGEPGVGKTAVVEGLAQKIVDGDVPQKLQNKEVIRLDVVSLVQGTGIRGQFE 202
Query: 141 EEVEMNLTELKRKVDSL 157
E ++ + E++++ D +
Sbjct: 203 ERMQKLMDEIRKRNDVI 219
Score = 35.8 bits (81), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 31/172 (18%)
Query: 455 EVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVEC-----KSAKKA 509
E K + +G+ L + + Q +L L+ +V Q +++ I + + K +
Sbjct: 417 EQKTQIPVGD--LKEKEQTQLINLADDLKAHVIGQDEAVDKISKAIRRSRVGLGKPNRPI 474
Query: 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY-- 566
FL G +GK LA +A+ +FGS++ + DM ++ + HS L+G Y
Sbjct: 475 GSFLFVGPTGVGKTELAKQLAKELFGSSESMIRFDM---SEYMEKHSVAKLIGAPPGYVG 531
Query: 567 --------EKL------VVLVEDIDLADP----QFIKILADGFETENFGKVI 600
E++ ++L+++I+ A P F++IL DG T+ G+ +
Sbjct: 532 YEEAGQLTERVRRNPYSLILLDEIEKAHPDVMHMFLQILEDGRLTDAQGRTV 583
>sp|Q9Z8A6|CLPC_CHLPN Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia pneumoniae GN=clpC PE=3 SV=2
Length = 845
Score = 40.0 bits (92), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 23/168 (13%)
Query: 456 VKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----AT 510
V + + ++ L+++ + L L+ V Q D++ SI + ++ K
Sbjct: 504 VSLQTGIPSARLTEAESEKLLKLEDTLRRKVIGQNDAVTSICRAIRRSRTGIKDPNRPTG 563
Query: 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE- 557
FL G +GK LA IA +FG D L +DM + + G H E
Sbjct: 564 SFLFLGPTGVGKSLLAQQIAIEMFGGEDALIQVDMSEYMEKFAATKMMGSPPGYVGHEEG 623
Query: 558 -MLMGTLKNYEKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
L ++ VVL ++I+ A P ++IL G T++FG+ +
Sbjct: 624 GHLTEQVRRRPYCVVLFDEIEKAHPDIMDLMLQILEQGRLTDSFGRKV 671
>sp|O84288|CLPC_CHLTR Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=clpC PE=3
SV=1
Length = 854
Score = 40.0 bits (92), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 23/168 (13%)
Query: 456 VKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----AT 510
V + + + L+++ + L LQ+ V Q ++ SI + ++ K
Sbjct: 506 VSVQTGIPAARLTEAESEKLLTLETTLQKKVIGQSQAVASICRAIRRSRTGIKDPNRPMG 565
Query: 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE- 557
FL G +GK LA IA +FG D L +DM + + G H E
Sbjct: 566 SFLFLGPTGVGKTLLAQQIAIEMFGGEDSLIQVDMSEYMEKFAATKMMGSPPGYVGHEEG 625
Query: 558 -MLMGTLKNYEKLVVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
L ++ VVL ++I+ A P ++IL G T++FG+ I
Sbjct: 626 GHLTEQVRRRPYCVVLFDEIEKAHPDIMDLMLQILEQGRLTDSFGRKI 673
>sp|Q49V34|CLPC_STAS1 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1
Length = 820
Score = 40.0 bits (92), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 29/150 (19%)
Query: 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAE 531
+L L V Q D++ SI + + ++ K F+ G +GK LA ++AE
Sbjct: 501 NLEDTLHNRVIGQKDAVTSISKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE 560
Query: 532 SVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY----------EKL------VVLVE 574
S+FG D + +DM ++ + H+ L+G Y EK+ V+L +
Sbjct: 561 SMFGEDDAMIRVDM---SEFMEKHAVSRLVGAPPGYVGHDDGGQLTEKVRRKPYSVILFD 617
Query: 575 DIDLADPQ----FIKILADGFETENFGKVI 600
+I+ A P +++L DG T+ G+ +
Sbjct: 618 EIEKAHPDVFNILLQVLDDGHLTDTKGRRV 647
>sp|Q89YY3|CLPB_BACTN Chaperone protein ClpB OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=clpB
PE=3 SV=1
Length = 862
Score = 40.0 bits (92), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 58/138 (42%), Gaps = 4/138 (2%)
Query: 39 CSPSSSEAHHFINPNTFWQNHALFSSQ-KPASVSKEDIKLVFEVFLRKKRRNTVIVGDCL 97
S SS + + + N A S + P E+I+ V ++ R+ + N +++G+
Sbjct: 148 TSQSSEDNYQSLEKYAINLNEAARSGKLDPVIGRDEEIRRVLQILSRRTKNNPILIGEPG 207
Query: 98 SITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSL 157
+ A+V R+ RGDVP+ LK V + K E E LK V+ +
Sbjct: 208 TGKTAIVEGLAHRILRGDVPENLKNKQVYSLDMGALVAGAKYKGEFE---ERLKSVVNEV 264
Query: 158 TSVGGGAIIYTGDLKWTV 175
G I++ ++ V
Sbjct: 265 KKSEGDIILFIDEIHTLV 282
Score = 36.6 bits (83), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 29/159 (18%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
L + V Q ++I ++ + + ++ + F+ G +GK LA ++AE +F
Sbjct: 564 LHQRVIGQDEAIEAVADAVRRSRAGLQDPKRPIGSFIFLGTTGVGKTELAKALAEFLFDD 623
Query: 537 TDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADPQ 582
++ IDM + + G + E L ++ VVL ++I+ A P
Sbjct: 624 ESMMTRIDMSEYQEKHSVSRLVGAPPGYVGYDEGGQLTEAIRRKPYSVVLFDEIEKAHPD 683
Query: 583 ----FIKILADGFETENFGKV------IFVLTKGDSSNY 611
+++L DG T+N G+V I ++T S+Y
Sbjct: 684 VFNILLQVLDDGRLTDNKGRVVNFKNTIIIMTSNMGSSY 722
>sp|Q7X2S8|CLPB_MEIRU Chaperone protein ClpB OS=Meiothermus ruber GN=clpB PE=3 SV=1
Length = 854
Score = 40.0 bits (92), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P E+I+ V ++ LR+ + N V++G+ A+V R+ +GDVP+ LK ++
Sbjct: 171 PVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPEGLKGKRIV 230
Query: 127 KFHFA 131
Sbjct: 231 SLQMG 235
>sp|O83110|CLPB_TREPA Chaperone protein ClpB OS=Treponema pallidum (strain Nichols)
GN=clpB PE=3 SV=1
Length = 878
Score = 39.7 bits (91), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P E+I+ V +V R+ + N V++G+ A+V R+ GDVP+ LK ++
Sbjct: 179 PVIGRDEEIRRVMQVLSRRTKNNPVLIGEPGVGKTAIVEGLARRIVSGDVPESLKGKRLL 238
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
+ + E E LK ++++ GG I++ +L V
Sbjct: 239 SLDLGALVAGAKFRGEFE---ERLKAVIEAVQKSDGGVILFIDELHTLV 284
>sp|P37571|CLPC_BACSU Negative regulator of genetic competence ClpC/MecB OS=Bacillus
subtilis (strain 168) GN=clpC PE=1 SV=1
Length = 810
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 24/110 (21%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTLKNY---- 566
F+ G +GK LA ++AES+FG + + IDM ++ + HS L+G+ Y
Sbjct: 541 FIFLGPTGVGKTELARALAESIFGDEESMIRIDM---SEYMEKHSTSRLVGSPPGYVGYD 597
Query: 567 ------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ VVL+++I+ A P +++L DG T++ G+ +
Sbjct: 598 EGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLTDSKGRTV 647
>sp|Q72IK9|CLPB_THET2 Chaperone protein ClpB OS=Thermus thermophilus (strain HB27 / ATCC
BAA-163 / DSM 7039) GN=clpB PE=3 SV=1
Length = 854
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P E+I+ V ++ LR+ + N V++G+ A+V R+ +GDVP+ LK ++
Sbjct: 171 PVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIV 230
Query: 127 KFHF 130
Sbjct: 231 SLQM 234
>sp|Q9PKA8|CLPC_CHLMU Probable ATP-dependent Clp protease ATP-binding subunit
OS=Chlamydia muridarum (strain MoPn / Nigg) GN=clpC PE=3
SV=1
Length = 870
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 23/146 (15%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAES 532
L LQ+ V Q ++ SI + ++ K FL G +GK LA IA
Sbjct: 545 LENTLQKKVIGQDQAVASICRAIRRSRTGIKDPNRPMGSFLFLGPTGVGKTLLAQQIAVE 604
Query: 533 VFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDL 578
+FG D L +DM + + G H E L ++ VVL ++I+
Sbjct: 605 MFGGEDSLIQVDMSEYMEKFAATKMMGSPPGYVGHEEGGHLTEQVRRRPYCVVLFDEIEK 664
Query: 579 ADPQ----FIKILADGFETENFGKVI 600
A P ++IL G T++FG+ I
Sbjct: 665 AHPDIMDLMLQILEQGRLTDSFGRKI 690
>sp|Q9RA63|CLPB_THET8 Chaperone protein ClpB OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=clpB PE=1 SV=2
Length = 854
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P E+I+ V ++ LR+ + N V++G+ A+V R+ +GDVP+ LK ++
Sbjct: 171 PVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIV 230
Query: 127 KFHF 130
Sbjct: 231 SLQM 234
>sp|Q6GDQ0|CLPL_STAAR ATP-dependent Clp protease ATP-binding subunit ClpL
OS=Staphylococcus aureus (strain MRSA252) GN=clpL PE=3
SV=1
Length = 701
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ + L +DM + +D ++ ++GT Y
Sbjct: 453 FLFVGPTGVGKTELAKQLAIDLFGNKEALIRLDMSEYSD--TTAVSKMIGTTAGYVGYDD 510
Query: 567 ------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ V+L ++I+ A+PQ ++++ DG T+ G VI
Sbjct: 511 NSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVI 560
>sp|Q8YM56|CLPB2_NOSS1 Chaperone protein ClpB 2 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=clpB2 PE=3 SV=2
Length = 872
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 96/242 (39%), Gaps = 56/242 (23%)
Query: 428 EFNFGNCT---RKPQGVEPRLD-------SLKSNEGKEVKITLALGN------SELSDSA 471
E +GN T R+ + E L SL E E I + S+L +S
Sbjct: 502 ELKYGNLTDLHRRLEATERELSQTQGTGKSLLREEVTEADIAEIISKWTGIPISKLVESE 561
Query: 472 KLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLA 526
K + L L V Q +++ ++ + + ++ + F+ G +GK LA
Sbjct: 562 KEKLLHLEDELHHRVIGQDEAVTAVADAIQRSRAGLADPNRPTASFVFLGPTGVGKTELA 621
Query: 527 LSIAESVFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVL 572
++A +F + D L IDM + + G + E L T++ V+L
Sbjct: 622 KALASYMFDTEDALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTETIRRRPYAVIL 681
Query: 573 VEDIDLADPQ----FIKILADGFETE------NFGKVIFVLT-----------KGDSSNY 611
++I+ A P F++IL DG T+ +F I ++T GD+S Y
Sbjct: 682 FDEIEKAHPDVFNIFLQILDDGRVTDAQGHTVDFKNTIIIMTSNIGSQYILDIAGDNSRY 741
Query: 612 EE 613
+E
Sbjct: 742 DE 743
Score = 35.4 bits (80), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P ++I+ ++ R+ + N V++G+ A+ R+ GDVPQ LK +I
Sbjct: 181 PVIGRDDEIRRTIQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRIVAGDVPQSLKDRKLI 240
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
+ + E E L + ++V T GG +++ ++ V
Sbjct: 241 SLDMGAMIAGAKFRGEFEERLKAVLKEV---TESGGNIVLFIDEIHTVV 286
>sp|Q2YWB1|CLPL_STAAB ATP-dependent Clp protease ATP-binding subunit ClpL
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
GN=clpL PE=3 SV=1
Length = 702
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 23/110 (20%)
Query: 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY----- 566
FL G +GK LA +A +FG+ + L +DM + +D ++ S+M+ GT Y
Sbjct: 453 FLFVGPTGVGKTELAKQLAIDLFGNKEALIRLDMSEYSD-TTAISKMI-GTTAGYVGYDD 510
Query: 567 ------EKL------VVLVEDIDLADPQ----FIKILADGFETENFGKVI 600
EK+ V+L ++I+ A+PQ ++++ DG T+ G VI
Sbjct: 511 NSNTLTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVI 560
>sp|Q7NAZ3|CLPB_MYCGA Chaperone protein ClpB OS=Mycoplasma gallisepticum (strain R(low /
passage 15 / clone 2)) GN=clpB PE=3 SV=1
Length = 717
Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P +E+I+ + E+ RK + N V++G+ A+V F ++ GDVP LK V+
Sbjct: 32 PTIGREEEIRRLIEILSRKNKNNPVLIGEPGVGKTAIVEGFARKIVNGDVPDNLKDVEVV 91
Query: 127 KFHFA 131
+ +
Sbjct: 92 ELSLS 96
>sp|Q9RVI3|CLPB_DEIRA Chaperone protein ClpB OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=clpB PE=3 SV=2
Length = 852
Score = 38.9 bits (89), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P E+I+ V ++ LR+ + N V++G+ A+ R+ +GDVP+ L+ ++
Sbjct: 171 PVIGRDEEIRRVMQILLRRSKNNPVLIGEPGVGKTAIAEGLAMRIVKGDVPEGLRDKKIV 230
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
+ + E E LK +D + G I++ ++ V
Sbjct: 231 SLEMGSLLAGAKFRGEFE---ERLKGVIDEVVKSAGEIILFVDEIHTIV 276
>sp|Q6N1H2|CLPB_RHOPA Chaperone protein ClpB OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=clpB PE=3 SV=1
Length = 879
Score = 38.5 bits (88), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P E+I+ +V R+ + N V++G+ A+V R+ GDVP+ LK ++
Sbjct: 181 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLALRILNGDVPESLKDKKLL 240
Query: 127 KFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
+ + E E LK ++ +T+ GG I++ ++ V
Sbjct: 241 ALDMGALIAGAKYRGEFE---ERLKAVLNEVTAAEGGIILFIDEMHTLV 286
>sp|O67588|CLPB_AQUAE Chaperone protein ClpB OS=Aquifex aeolicus (strain VF5) GN=clpB
PE=3 SV=1
Length = 1006
Score = 38.5 bits (88), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 29/159 (18%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSAKK-----ATWFLLQGNDTIGKRRLALSIAESVFGS 536
L + V Q ++ ++ E + ++ K FL G +GK L+ ++AE +FG
Sbjct: 687 LHKRVVDQEHAVKAVAEAIRRARAGLKDPKRPIASFLFLGPTGVGKTELSKALAELLFGD 746
Query: 537 TDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDLADPQ 582
D L +DM + + G + E L ++ V+L+++I+ A P+
Sbjct: 747 EDALIRLDMSEFKEEHSVAKLIGAPPGYVGYEEGGKLTEAVRRKPYSVILLDEIEKAHPR 806
Query: 583 ----FIKILADGFETENFGK------VIFVLTKGDSSNY 611
F+++L DG T++ G+ + ++T S Y
Sbjct: 807 VLDLFLQVLDDGRLTDSHGRTVDFRNTVIIMTSNIGSQY 845
Score = 33.5 bits (75), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P + +I V E+ LR+ + N V+VGD A+V R+ +VP EL+ +
Sbjct: 313 PVIGREREINQVIEILLRRTKNNPVLVGDPGVGKTAIVEGLAQRIVNKEVPPELQDKEIW 372
Query: 127 KFHFAPV----TLRFMKKEEVEMNLTELKRK------VDSL-TSVGGGA 164
A + R +E ++ L E+K K +D + T VG GA
Sbjct: 373 SIDMASLLAGSKYRGEFEERLKALLDEVKEKGNVILFIDEIHTVVGAGA 421
>sp|Q831Y7|CLPB_ENTFA Chaperone protein ClpB OS=Enterococcus faecalis (strain ATCC 700802
/ V583) GN=clpB PE=3 SV=1
Length = 868
Score = 37.7 bits (86), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 68/146 (46%), Gaps = 23/146 (15%)
Query: 478 LYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAES 532
L + L + V Q +++ ++ + ++ ++ + FL G +GK LA ++AE
Sbjct: 565 LNETLHKRVIGQDEAVDAVSDAVIRSRAGLQDPNRPLGSFLFLGPTGVGKTELAKALAED 624
Query: 533 VFGSTDLLFHIDMRKRND------------GVSSHSE--MLMGTLKNYEKLVVLVEDIDL 578
+F S D + IDM + + G + E L ++ +VL+++I+
Sbjct: 625 LFDSEDHMVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEAVRRNPYTIVLLDEIEK 684
Query: 579 ADPQ----FIKILADGFETENFGKVI 600
A P +++L DG T++ G+V+
Sbjct: 685 AHPDVFNILLQVLDDGRLTDSKGRVV 710
Score = 34.3 bits (77), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 65 QKPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELK 121
Q P E+I+ V + RK + N V++G+ A+V R+ R DVP+ LK
Sbjct: 179 QDPIIGRDEEIRDVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPENLK 235
>sp|F4JVJ1|CLPB2_ARATH Putative chaperone protein ClpB2, chloroplastic OS=Arabidopsis
thaliana GN=CLPB2 PE=2 SV=1
Length = 623
Score = 37.4 bits (85), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 482 LQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGS 536
L E V Q +++ ++ ++ + + + FL G +GK LA ++AE +F S
Sbjct: 532 LHERVVGQDEAVKAVAAAILRSRVGLGRPQQPSGSFLFLGPTGVGKTELAKALAEQLFDS 591
Query: 537 TDLLFHIDMRKRNDGVSSHSEMLMGTLKNY 566
+LL +DM + ND S + L+G Y
Sbjct: 592 ENLLVRLDMSEYNDKFSVNK--LIGAPPGY 619
Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 74 DIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHF--- 130
+I+ V EV R+ + N V++G+ A+V R+ +GDVP L +I F
Sbjct: 152 EIRRVIEVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRILKGDVPINLTGVKLISLEFGAM 211
Query: 131 -APVTLR 136
A TLR
Sbjct: 212 VAGTTLR 218
>sp|Q82EU9|CLPB1_STRAW Chaperone protein ClpB 1 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=clpB1 PE=3 SV=1
Length = 870
Score = 37.4 bits (85), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 65/159 (40%), Gaps = 13/159 (8%)
Query: 18 SSASSVFQCYTSSGGGVFSSPCSPSSSEAHHFINPNTFWQNHALFSSQKPASVSKEDIKL 77
+SA + + + + GG + P + T + A P ++I+
Sbjct: 132 ASAKKLLEAFQKTRGGRRVTTPDPEG-QYKALEKFGTDFTAAARDGKLDPVIGRDQEIRR 190
Query: 78 VFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHF----APV 133
V +V R+ + N V++G+ A+V R+ +GDVP+ LK ++ A
Sbjct: 191 VVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLKNKRLVALDLGAMVAGA 250
Query: 134 TLRFMKKEEVEMNLTELKRK-------VDSL-TSVGGGA 164
R +E ++ L E+K +D L T VG GA
Sbjct: 251 KYRGEFEERLKTVLAEIKDSDGQIITFIDELHTVVGAGA 289
>sp|Q9Z6E4|CLPB_STRAL Chaperone protein ClpB OS=Streptomyces albus G GN=clpB PE=2 SV=1
Length = 857
Score = 37.4 bits (85), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 67 PASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVI 126
P ++I+ V +V R+ + N V++G+ A+V R+ +GDVP+ LK ++
Sbjct: 180 PVIGRDQEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLKDKRLV 239
Query: 127 KFHF----APVTLRFMKKEEVEMNLTELKRK-------VDSL-TSVGGGA 164
A R +E ++ L+E+K +D L T VG GA
Sbjct: 240 SLDLGAMVAGAKYRGEFEERLKTVLSEIKESDGQIVTFIDELHTVVGAGA 289
>sp|Q9R1S7|MRP6_MOUSE Multidrug resistance-associated protein 6 OS=Mus musculus GN=Abcc6
PE=1 SV=3
Length = 1498
Score = 37.0 bits (84), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 16/78 (20%)
Query: 290 EEDHKLNCCAECTSNYEEEAQ------LFKSGQKKLLPP---WLQPHSSSNANQKDELV- 339
E+ LN C E +++ +A L G KKLL P W S N +ELV
Sbjct: 201 EDSQPLNPCPEAEASFPSKAMFWWASGLLWRGYKKLLGPKDLW----SLGRENSSEELVS 256
Query: 340 EMRRKWNRSCHSL--HQG 355
++ R+W RSC+ L H+G
Sbjct: 257 QLEREWRRSCNGLPGHKG 274
>sp|Q74FF1|CLPB_GEOSL Chaperone protein ClpB OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=clpB PE=3 SV=1
Length = 865
Score = 36.6 bits (83), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 22/136 (16%)
Query: 51 NPNTFWQNHALFSSQ----------KPASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSIT 100
NP +Q A ++ P ++I+ V +V R+ + N V++G+
Sbjct: 155 NPEDTYQALAKYARDLTDLARQGKLDPVIGRDDEIRRVLQVLSRRTKNNPVLIGEPGVGK 214
Query: 101 DALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKV------ 154
A+V R+ GDVP+ LK ++ + + E E L + R+V
Sbjct: 215 TAIVEGLAQRIVSGDVPETLKDKRLVALDMGALIAGAKYRGEFEERLKAVIREVAKSEGK 274
Query: 155 -----DSL-TSVGGGA 164
D L T VG GA
Sbjct: 275 VILFIDELHTLVGAGA 290
>sp|Q7WSY8|CLPB_PROFC Chaperone protein ClpB OS=Propionibacterium freudenreichii subsp.
shermanii (strain ATCC 9614 / CIP 103027 / CIRM-BIA1)
GN=clpB PE=2 SV=2
Length = 866
Score = 36.6 bits (83), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 74 DIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPV 133
+I+ V +V R+ + N V++G+ A+V R+ +GDVP LK ++ A +
Sbjct: 187 EIRRVAQVLSRRTKNNPVLIGEAGVGKTAVVEGLAQRIVKGDVPDSLKGRRLVSLDLASM 246
Query: 134 TLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175
+ E E LK ++ + S G I + +L V
Sbjct: 247 VAGAKYRGEFE---ERLKAVLNEIKSAEGQIITFIDELHTVV 285
>sp|Q826F2|CLPB2_STRAW Chaperone protein ClpB 2 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=clpB2 PE=3 SV=1
Length = 879
Score = 36.6 bits (83), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
Query: 74 DIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHF--- 130
+I+ V ++ RK + N V++GD A+V R+ RGDVP+ L+ V
Sbjct: 191 EIRRVTQILSRKTKNNPVLIGDPGVGKTAIVEGLAQRIVRGDVPEGLRDKTVFALDMGSL 250
Query: 131 -APVTLRFMKKEEVEMNLTELKRK-------VDSL-TSVGGGA 164
A R +E ++ L+E+K VD L T VG GA
Sbjct: 251 VAGAKYRGEFEERLKAVLSEVKAAEGRILLFVDELHTVVGAGA 293
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 309,133,511
Number of Sequences: 539616
Number of extensions: 13077538
Number of successful extensions: 41211
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 160
Number of HSP's that attempted gapping in prelim test: 40888
Number of HSP's gapped (non-prelim): 501
length of query: 850
length of database: 191,569,459
effective HSP length: 126
effective length of query: 724
effective length of database: 123,577,843
effective search space: 89470358332
effective search space used: 89470358332
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)