Query 003070
Match_columns 850
No_of_seqs 226 out of 1539
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 16:26:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1051 Chaperone HSP104 and r 100.0 3E-112 6E-117 1005.9 41.0 668 1-824 134-854 (898)
2 COG0542 clpA ATP-binding subun 100.0 3E-111 7E-116 986.7 37.2 553 69-822 173-774 (786)
3 TIGR03345 VI_ClpV1 type VI sec 100.0 7.9E-76 1.7E-80 712.0 40.3 585 69-816 190-843 (852)
4 CHL00095 clpC Clp protease ATP 100.0 1E-75 2.2E-80 712.6 40.9 552 69-822 182-801 (821)
5 PRK10865 protein disaggregatio 100.0 3.6E-70 7.9E-75 664.2 39.6 595 69-822 181-848 (857)
6 TIGR03346 chaperone_ClpB ATP-d 100.0 4.9E-69 1.1E-73 655.9 41.8 594 69-821 176-844 (852)
7 TIGR02639 ClpA ATP-dependent C 100.0 1.6E-68 3.5E-73 642.8 38.4 500 69-813 185-721 (731)
8 PRK11034 clpA ATP-dependent Cl 100.0 2E-68 4.4E-73 637.4 37.9 508 69-821 189-734 (758)
9 TIGR00382 clpX endopeptidase C 99.9 1.7E-26 3.8E-31 260.2 19.8 260 475-810 68-391 (413)
10 PRK05342 clpX ATP-dependent pr 99.9 6E-24 1.3E-28 240.5 21.0 264 474-810 61-385 (412)
11 PF07724 AAA_2: AAA domain (Cd 99.9 1.8E-23 4E-28 210.7 7.3 102 507-608 1-131 (171)
12 TIGR00763 lon ATP-dependent pr 99.7 1.6E-15 3.4E-20 185.1 21.2 220 472-811 308-562 (775)
13 PRK10787 DNA-binding ATP-depen 99.6 3.6E-14 7.9E-19 172.5 21.2 223 472-813 310-565 (784)
14 TIGR01243 CDC48 AAA family ATP 99.5 7.7E-12 1.7E-16 152.3 26.9 152 69-255 181-347 (733)
15 PRK05201 hslU ATP-dependent pr 99.4 4.6E-12 1E-16 142.7 17.9 83 722-807 318-410 (443)
16 CHL00181 cbbX CbbX; Provisiona 99.3 3.6E-11 7.7E-16 131.1 17.9 218 473-813 12-264 (287)
17 TIGR00390 hslU ATP-dependent p 99.3 4.4E-11 9.6E-16 134.8 16.3 83 722-807 316-408 (441)
18 COG1219 ClpX ATP-dependent pro 99.2 2.5E-10 5.4E-15 123.0 16.5 260 475-808 52-372 (408)
19 KOG2170 ATPase of the AAA+ sup 99.2 1.1E-10 2.4E-15 125.0 13.8 137 474-611 72-229 (344)
20 KOG0745 Putative ATP-dependent 99.2 3.2E-10 7E-15 126.0 17.1 268 475-807 136-512 (564)
21 TIGR02880 cbbX_cfxQ probable R 99.2 7.2E-10 1.6E-14 120.7 18.1 214 474-810 12-260 (284)
22 TIGR02881 spore_V_K stage V sp 99.1 3E-09 6.5E-14 114.2 18.3 119 486-605 8-150 (261)
23 PRK07003 DNA polymerase III su 99.1 3.3E-09 7.2E-14 126.5 18.7 115 484-607 16-158 (830)
24 PRK14956 DNA polymerase III su 99.0 2.9E-09 6.3E-14 122.6 16.1 115 484-607 18-160 (484)
25 PLN03025 replication factor C 99.0 3.4E-09 7.3E-14 117.1 15.8 113 485-607 14-138 (319)
26 PRK12323 DNA polymerase III su 99.0 4.1E-09 8.8E-14 124.4 16.4 115 484-607 16-163 (700)
27 PRK14960 DNA polymerase III su 99.0 6.2E-09 1.3E-13 123.1 17.9 115 484-607 15-157 (702)
28 PRK14957 DNA polymerase III su 99.0 1.2E-08 2.6E-13 119.8 17.0 114 485-607 17-158 (546)
29 PRK14958 DNA polymerase III su 99.0 1.3E-08 2.8E-13 119.2 17.1 114 485-607 17-158 (509)
30 PRK14961 DNA polymerase III su 98.9 1.8E-08 3.9E-13 113.4 17.2 115 484-607 16-158 (363)
31 PRK14959 DNA polymerase III su 98.9 1.4E-08 3E-13 120.3 16.8 114 485-607 17-158 (624)
32 PRK00080 ruvB Holliday junctio 98.9 3.2E-08 6.8E-13 109.8 18.6 105 485-596 26-131 (328)
33 TIGR00635 ruvB Holliday juncti 98.9 2.5E-08 5.5E-13 108.8 17.5 111 484-605 4-116 (305)
34 KOG0730 AAA+-type ATPase [Post 98.9 2.8E-08 6E-13 115.9 18.4 134 87-255 218-352 (693)
35 KOG0733 Nuclear AAA ATPase (VC 98.9 4.2E-08 9.2E-13 113.1 19.6 137 87-255 223-364 (802)
36 TIGR01817 nifA Nif-specific re 98.9 1.9E-08 4.1E-13 118.7 17.5 205 484-800 196-425 (534)
37 PRK14951 DNA polymerase III su 98.9 1.9E-08 4.2E-13 119.6 17.5 114 485-607 17-163 (618)
38 PRK14949 DNA polymerase III su 98.9 1.9E-08 4.1E-13 122.2 16.9 120 484-607 16-158 (944)
39 PRK08691 DNA polymerase III su 98.9 2E-08 4.4E-13 119.6 16.0 120 484-607 16-158 (709)
40 PRK14962 DNA polymerase III su 98.9 2.2E-08 4.8E-13 116.2 16.0 114 484-606 14-155 (472)
41 COG0466 Lon ATP-dependent Lon 98.9 5.2E-08 1.1E-12 114.6 18.9 132 471-607 310-475 (782)
42 TIGR02902 spore_lonB ATP-depen 98.9 3.6E-08 7.8E-13 116.2 17.2 108 485-596 66-204 (531)
43 PRK08451 DNA polymerase III su 98.9 4.7E-08 1E-12 114.5 17.8 119 485-607 15-156 (535)
44 PF05496 RuvB_N: Holliday junc 98.9 1.3E-08 2.7E-13 106.6 11.4 105 484-596 24-130 (233)
45 PHA02544 44 clamp loader, smal 98.9 7.1E-08 1.5E-12 105.8 17.9 113 485-607 22-140 (316)
46 PRK05563 DNA polymerase III su 98.9 5.9E-08 1.3E-12 115.0 18.1 114 484-606 16-157 (559)
47 TIGR02397 dnaX_nterm DNA polym 98.9 4.9E-08 1.1E-12 108.5 16.6 118 484-607 14-156 (355)
48 PRK14970 DNA polymerase III su 98.8 8.8E-08 1.9E-12 107.7 18.2 119 484-606 17-146 (367)
49 PRK07764 DNA polymerase III su 98.8 2.8E-08 6E-13 121.9 15.2 115 484-607 15-159 (824)
50 COG2256 MGS1 ATPase related to 98.8 2.2E-08 4.7E-13 111.4 12.7 109 485-605 25-139 (436)
51 KOG0989 Replication factor C, 98.8 2.8E-08 6.1E-13 107.2 12.7 117 485-607 37-168 (346)
52 PRK14952 DNA polymerase III su 98.8 7.6E-08 1.7E-12 114.1 17.3 115 484-607 13-157 (584)
53 TIGR02974 phageshock_pspF psp 98.8 6.9E-08 1.5E-12 107.4 16.0 206 486-801 1-231 (329)
54 PRK14964 DNA polymerase III su 98.8 9.9E-08 2.1E-12 110.9 17.6 115 484-607 13-155 (491)
55 PRK14965 DNA polymerase III su 98.8 5.7E-08 1.2E-12 115.6 16.0 120 484-607 16-158 (576)
56 PF07728 AAA_5: AAA domain (dy 98.8 5.3E-09 1.2E-13 100.9 6.0 91 512-607 2-123 (139)
57 PRK07994 DNA polymerase III su 98.8 1.2E-07 2.5E-12 113.4 18.2 120 484-607 16-158 (647)
58 PRK14969 DNA polymerase III su 98.8 1.1E-07 2.3E-12 112.1 17.7 114 485-607 17-158 (527)
59 PRK14963 DNA polymerase III su 98.8 1.3E-07 2.8E-12 110.8 18.0 113 485-606 15-154 (504)
60 PRK06645 DNA polymerase III su 98.8 8.4E-08 1.8E-12 112.1 16.5 118 485-606 22-166 (507)
61 PRK13342 recombination factor 98.8 8.6E-08 1.9E-12 109.7 15.4 108 485-605 13-127 (413)
62 PRK09111 DNA polymerase III su 98.8 1.1E-07 2.5E-12 113.1 16.7 118 485-606 25-170 (598)
63 TIGR02640 gas_vesic_GvpN gas v 98.8 4.1E-08 8.8E-13 105.8 11.6 110 490-607 4-160 (262)
64 PRK06305 DNA polymerase III su 98.8 1.3E-07 2.8E-12 109.4 16.4 118 485-606 18-159 (451)
65 PRK07133 DNA polymerase III su 98.8 1.3E-07 2.9E-12 113.6 16.5 119 484-606 18-156 (725)
66 PF00004 AAA: ATPase family as 98.7 3.5E-08 7.6E-13 93.0 9.1 94 512-608 1-112 (132)
67 PRK14971 DNA polymerase III su 98.7 1.8E-07 3.8E-12 112.0 16.6 114 484-606 17-159 (614)
68 PRK13341 recombination factor 98.7 1.5E-07 3.3E-12 114.2 16.1 105 485-595 29-137 (725)
69 cd00009 AAA The AAA+ (ATPases 98.7 7.9E-08 1.7E-12 90.4 10.4 117 487-607 1-129 (151)
70 PRK14953 DNA polymerase III su 98.7 2.7E-07 5.8E-12 107.7 17.0 114 485-606 17-157 (486)
71 PRK05896 DNA polymerase III su 98.7 2.2E-07 4.7E-12 109.9 16.3 118 485-606 17-157 (605)
72 PRK13531 regulatory ATPase Rav 98.7 5.1E-08 1.1E-12 112.3 10.8 126 472-607 8-156 (498)
73 PRK06893 DNA replication initi 98.7 1.7E-07 3.7E-12 99.0 13.9 95 507-607 37-134 (229)
74 PRK14954 DNA polymerase III su 98.7 2.4E-07 5.3E-12 110.6 16.6 119 484-606 16-165 (620)
75 TIGR03420 DnaA_homol_Hda DnaA 98.7 2.2E-07 4.7E-12 96.7 14.1 110 488-607 21-132 (226)
76 PRK11608 pspF phage shock prot 98.7 3.6E-07 7.8E-12 101.6 16.4 207 484-800 6-237 (326)
77 PF06309 Torsin: Torsin; Inte 98.7 9.7E-08 2.1E-12 91.7 9.9 99 474-573 15-127 (127)
78 PF13177 DNA_pol3_delta2: DNA 98.7 9.5E-08 2.1E-12 95.8 10.1 117 488-608 1-142 (162)
79 PF00158 Sigma54_activat: Sigm 98.7 8.2E-08 1.8E-12 97.0 9.6 120 486-607 1-143 (168)
80 PRK06647 DNA polymerase III su 98.7 4.4E-07 9.6E-12 107.5 17.2 120 484-607 16-158 (563)
81 PRK12402 replication factor C 98.6 1.3E-07 2.9E-12 104.1 11.5 117 485-606 16-163 (337)
82 PRK07940 DNA polymerase III su 98.6 2.3E-07 4.9E-12 105.6 13.4 123 484-607 5-156 (394)
83 PRK05022 anaerobic nitric oxid 98.6 9.9E-07 2.2E-11 103.7 18.9 111 484-596 187-310 (509)
84 COG0714 MoxR-like ATPases [Gen 98.6 8.2E-08 1.8E-12 106.6 9.3 120 474-606 14-162 (329)
85 PRK04195 replication factor C 98.6 5.4E-07 1.2E-11 105.2 16.2 114 486-607 16-139 (482)
86 PRK08084 DNA replication initi 98.6 6.7E-07 1.5E-11 94.9 14.8 89 509-606 45-139 (235)
87 TIGR02903 spore_lon_C ATP-depe 98.6 8.3E-07 1.8E-11 106.5 17.1 107 485-595 155-293 (615)
88 PRK07471 DNA polymerase III su 98.6 4.4E-07 9.6E-12 102.3 13.4 119 485-607 20-180 (365)
89 PRK14955 DNA polymerase III su 98.6 3E-07 6.4E-12 104.9 11.6 119 484-606 16-165 (397)
90 COG1220 HslU ATP-dependent pro 98.6 1.2E-06 2.6E-11 95.6 15.3 117 476-598 7-170 (444)
91 PRK15429 formate hydrogenlyase 98.6 2.4E-06 5.2E-11 103.9 19.7 110 485-596 377-499 (686)
92 PRK11388 DNA-binding transcrip 98.6 1E-06 2.3E-11 106.2 16.4 121 484-606 325-465 (638)
93 CHL00195 ycf46 Ycf46; Provisio 98.5 1.8E-06 3.8E-11 100.8 17.0 90 510-606 260-368 (489)
94 PRK08727 hypothetical protein; 98.5 2.1E-06 4.6E-11 90.9 16.1 95 506-607 38-135 (233)
95 PRK10820 DNA-binding transcrip 98.5 3.1E-06 6.7E-11 99.9 17.9 111 485-597 205-328 (520)
96 PRK05564 DNA polymerase III su 98.5 7.5E-07 1.6E-11 98.3 11.9 119 484-606 4-131 (313)
97 TIGR03689 pup_AAA proteasome A 98.5 1.3E-06 2.9E-11 102.0 14.2 166 70-255 186-366 (512)
98 PRK00440 rfc replication facto 98.5 6E-07 1.3E-11 98.0 10.7 115 486-607 19-141 (319)
99 COG0470 HolB ATPase involved i 98.5 8.2E-07 1.8E-11 97.0 11.0 118 486-607 3-148 (325)
100 PRK10923 glnG nitrogen regulat 98.5 3.4E-06 7.3E-11 97.7 16.6 120 485-606 139-281 (469)
101 PRK08903 DnaA regulatory inact 98.4 5.9E-06 1.3E-10 86.6 16.8 90 507-606 40-130 (227)
102 PRK14948 DNA polymerase III su 98.4 7E-07 1.5E-11 107.0 11.0 114 485-607 17-160 (620)
103 PRK05642 DNA replication initi 98.4 1.8E-06 3.9E-11 91.6 12.9 92 510-607 46-139 (234)
104 smart00382 AAA ATPases associa 98.4 4E-07 8.7E-12 84.5 7.1 98 510-607 3-125 (148)
105 PF00004 AAA: ATPase family as 98.4 1.4E-06 3.1E-11 82.0 10.8 122 91-244 2-124 (132)
106 PRK07399 DNA polymerase III su 98.4 1.8E-06 3.8E-11 95.7 12.5 119 484-607 4-162 (314)
107 PRK14950 DNA polymerase III su 98.4 1.3E-06 2.8E-11 104.3 12.1 115 484-607 16-159 (585)
108 PRK03992 proteasome-activating 98.4 1.2E-06 2.5E-11 99.8 11.1 120 485-607 132-279 (389)
109 PRK05707 DNA polymerase III su 98.4 2.6E-06 5.6E-11 94.9 12.8 112 486-607 5-145 (328)
110 PRK11331 5-methylcytosine-spec 98.4 2.4E-06 5.3E-11 97.9 11.9 122 478-607 170-334 (459)
111 TIGR01650 PD_CobS cobaltochela 98.3 1.4E-06 3.1E-11 96.3 9.3 91 511-606 66-186 (327)
112 TIGR03345 VI_ClpV1 type VI sec 98.3 5.5E-06 1.2E-10 102.8 15.5 115 484-606 187-324 (852)
113 TIGR00362 DnaA chromosomal rep 98.3 6.2E-06 1.4E-10 94.2 14.5 99 507-607 134-241 (405)
114 PRK03992 proteasome-activating 98.3 5.6E-06 1.2E-10 94.3 13.8 155 69-256 134-304 (389)
115 TIGR02639 ClpA ATP-dependent C 98.3 5.7E-06 1.2E-10 101.4 14.7 115 484-606 182-319 (731)
116 TIGR01242 26Sp45 26S proteasom 98.3 1.8E-06 3.9E-11 97.2 9.5 121 484-607 122-270 (364)
117 TIGR00678 holB DNA polymerase 98.3 4.9E-06 1.1E-10 84.8 11.8 98 505-607 10-135 (188)
118 TIGR00368 Mg chelatase-related 98.3 6.8E-06 1.5E-10 96.3 14.3 116 484-606 192-346 (499)
119 TIGR02442 Cob-chelat-sub cobal 98.3 2.8E-06 6E-11 102.4 11.2 118 484-606 4-177 (633)
120 PRK11361 acetoacetate metaboli 98.3 1.8E-05 3.8E-10 91.3 17.3 120 485-606 144-286 (457)
121 PRK08699 DNA polymerase III su 98.3 5.8E-06 1.2E-10 92.0 12.8 116 486-607 3-152 (325)
122 PHA02244 ATPase-like protein 98.3 3.4E-06 7.3E-11 94.6 10.7 92 511-607 121-230 (383)
123 PRK08058 DNA polymerase III su 98.3 3.4E-06 7.3E-11 94.0 10.7 120 484-607 5-149 (329)
124 PF07726 AAA_3: ATPase family 98.3 1.2E-06 2.6E-11 84.5 6.1 89 512-607 2-112 (131)
125 KOG2004 Mitochondrial ATP-depe 98.3 3.9E-06 8.4E-11 98.8 11.2 141 458-606 388-562 (906)
126 PTZ00454 26S protease regulato 98.3 3.9E-06 8.5E-11 95.8 10.9 120 485-607 146-293 (398)
127 TIGR01818 ntrC nitrogen regula 98.2 1.8E-05 4E-10 91.4 16.3 119 486-606 136-277 (463)
128 COG2812 DnaX DNA polymerase II 98.2 7.6E-06 1.6E-10 95.4 12.9 119 485-607 17-158 (515)
129 TIGR02915 PEP_resp_reg putativ 98.2 2.1E-05 4.5E-10 90.5 16.1 120 485-606 140-282 (445)
130 PF01078 Mg_chelatase: Magnesi 98.2 2.2E-06 4.9E-11 89.0 7.2 113 484-606 3-157 (206)
131 smart00763 AAA_PrkA PrkA AAA d 98.2 5.2E-06 1.1E-10 92.9 10.2 49 485-533 52-102 (361)
132 PRK13407 bchI magnesium chelat 98.2 4.3E-06 9.3E-11 93.3 9.4 119 485-607 9-180 (334)
133 PRK00149 dnaA chromosomal repl 98.2 1.3E-05 2.8E-10 92.9 13.6 96 506-607 145-253 (450)
134 TIGR02329 propionate_PrpR prop 98.2 2.4E-05 5.3E-10 92.3 15.6 110 485-596 213-336 (526)
135 PRK09112 DNA polymerase III su 98.2 1.5E-05 3.3E-10 89.6 13.2 119 484-606 23-179 (351)
136 PRK08769 DNA polymerase III su 98.2 1.6E-05 3.5E-10 88.2 12.7 119 485-607 5-152 (319)
137 PF00308 Bac_DnaA: Bacterial d 98.2 3.8E-05 8.3E-10 80.8 14.9 113 492-607 18-139 (219)
138 TIGR00764 lon_rel lon-related 98.2 3E-05 6.5E-10 93.1 15.9 54 477-536 11-64 (608)
139 TIGR01241 FtsH_fam ATP-depende 98.1 6.2E-06 1.3E-10 96.7 9.5 120 486-608 57-203 (495)
140 PRK06871 DNA polymerase III su 98.1 1.7E-05 3.7E-10 88.2 12.4 117 486-607 4-146 (325)
141 TIGR02928 orc1/cdc6 family rep 98.1 9.1E-06 2E-10 90.9 10.4 124 484-607 15-174 (365)
142 TIGR02030 BchI-ChlI magnesium 98.1 1E-05 2.2E-10 90.4 10.4 118 485-606 5-182 (337)
143 TIGR03689 pup_AAA proteasome A 98.1 8.8E-06 1.9E-10 95.3 9.9 119 486-607 184-342 (512)
144 PTZ00361 26 proteosome regulat 98.1 8.2E-06 1.8E-10 94.1 9.6 120 485-607 184-331 (438)
145 PRK15115 response regulator Gl 98.1 5.6E-05 1.2E-09 87.0 16.4 120 485-606 135-277 (444)
146 PRK06090 DNA polymerase III su 98.1 2.8E-05 6E-10 86.3 13.2 119 485-607 4-147 (319)
147 TIGR00602 rad24 checkpoint pro 98.1 6.4E-05 1.4E-09 90.3 16.6 49 485-533 85-134 (637)
148 TIGR02881 spore_V_K stage V sp 98.1 2.1E-05 4.5E-10 84.7 11.4 137 88-255 43-179 (261)
149 PRK08116 hypothetical protein; 98.1 1.2E-05 2.5E-10 87.3 9.6 95 510-606 115-219 (268)
150 PTZ00112 origin recognition co 98.1 4.3E-05 9.4E-10 92.7 14.3 124 484-607 755-911 (1164)
151 CHL00095 clpC Clp protease ATP 98.1 4E-05 8.7E-10 95.2 14.7 109 484-597 179-309 (821)
152 PRK07993 DNA polymerase III su 98.1 4.1E-05 8.8E-10 85.6 13.3 119 485-607 3-147 (334)
153 PF14532 Sigma54_activ_2: Sigm 98.0 1.6E-05 3.4E-10 77.3 8.3 108 487-606 1-108 (138)
154 CHL00176 ftsH cell division pr 98.0 1.6E-05 3.4E-10 95.8 9.9 118 486-607 185-330 (638)
155 PF13173 AAA_14: AAA domain 98.0 8.6E-06 1.9E-10 78.1 6.3 92 510-606 3-97 (128)
156 TIGR01241 FtsH_fam ATP-depende 98.0 2.9E-05 6.4E-10 91.1 11.9 152 73-256 65-227 (495)
157 COG1222 RPT1 ATP-dependent 26S 98.0 2.2E-05 4.7E-10 86.9 9.7 119 486-607 153-299 (406)
158 PF05673 DUF815: Protein of un 98.0 4.1E-05 8.9E-10 81.5 11.4 115 487-606 30-149 (249)
159 PRK12377 putative replication 98.0 2E-05 4.3E-10 84.6 9.0 96 509-606 101-204 (248)
160 TIGR02031 BchD-ChlD magnesium 98.0 0.00012 2.6E-09 87.7 16.7 96 499-596 6-113 (589)
161 CHL00176 ftsH cell division pr 98.0 3.8E-05 8.2E-10 92.5 12.2 151 72-255 192-354 (638)
162 PRK04132 replication factor C 98.0 6.1E-05 1.3E-09 92.7 13.6 98 508-608 563-670 (846)
163 KOG0727 26S proteasome regulat 98.0 1.6E-05 3.4E-10 84.1 7.3 98 507-608 188-304 (408)
164 COG1223 Predicted ATPase (AAA+ 98.0 0.00017 3.7E-09 76.8 14.9 93 479-578 116-221 (368)
165 PRK12422 chromosomal replicati 98.0 7.6E-05 1.6E-09 86.5 13.6 98 508-607 140-244 (445)
166 TIGR02880 cbbX_cfxQ probable R 98.0 4.7E-05 1E-09 83.2 11.2 136 89-255 60-196 (284)
167 CHL00081 chlI Mg-protoporyphyr 97.9 3E-05 6.6E-10 87.0 9.1 118 485-607 18-196 (350)
168 PRK07952 DNA replication prote 97.9 3E-05 6.5E-10 83.0 8.6 95 510-606 100-203 (244)
169 PRK00411 cdc6 cell division co 97.9 4.8E-05 1E-09 86.1 10.6 124 484-607 30-182 (394)
170 COG3604 FhlA Transcriptional r 97.9 0.00018 4E-09 82.6 14.8 120 485-606 224-366 (550)
171 TIGR01242 26Sp45 26S proteasom 97.9 8.9E-05 1.9E-09 83.6 12.2 155 69-255 125-294 (364)
172 PRK06964 DNA polymerase III su 97.9 6.1E-05 1.3E-09 84.4 10.6 116 486-607 3-171 (342)
173 CHL00181 cbbX CbbX; Provisiona 97.9 5.5E-05 1.2E-09 82.9 9.9 136 89-255 61-197 (287)
174 COG2255 RuvB Holliday junction 97.9 4.5E-05 9.7E-10 82.2 8.8 104 486-596 28-132 (332)
175 PTZ00361 26 proteosome regulat 97.9 9.9E-05 2.1E-09 85.3 12.3 154 70-255 187-355 (438)
176 PRK14087 dnaA chromosomal repl 97.9 0.00023 5.1E-09 82.7 15.4 101 506-608 138-249 (450)
177 TIGR02928 orc1/cdc6 family rep 97.8 0.0003 6.5E-09 78.8 15.6 160 69-255 18-200 (365)
178 PRK09087 hypothetical protein; 97.8 0.00041 8.9E-09 73.5 15.7 80 508-606 43-125 (226)
179 TIGR03346 chaperone_ClpB ATP-d 97.8 9.9E-05 2.2E-09 92.1 12.8 114 485-606 174-310 (852)
180 PF13191 AAA_16: AAA ATPase do 97.8 4.1E-05 8.8E-10 76.5 7.7 45 70-114 4-51 (185)
181 CHL00195 ycf46 Ycf46; Provisio 97.8 0.0001 2.2E-09 86.3 11.9 134 86-255 258-393 (489)
182 PRK14086 dnaA chromosomal repl 97.8 0.00023 4.9E-09 84.9 14.9 106 495-607 301-419 (617)
183 PRK14088 dnaA chromosomal repl 97.8 0.00016 3.4E-09 83.9 13.4 91 511-606 132-235 (440)
184 TIGR01243 CDC48 AAA family ATP 97.8 0.00011 2.4E-09 90.2 12.7 136 86-255 486-623 (733)
185 PRK06620 hypothetical protein; 97.8 0.00053 1.1E-08 72.1 15.9 76 510-606 45-121 (214)
186 PRK15424 propionate catabolism 97.8 6E-05 1.3E-09 89.1 9.4 120 485-606 220-371 (538)
187 PF10431 ClpB_D2-small: C-term 97.8 9.5E-05 2.1E-09 65.6 8.3 73 745-819 5-80 (81)
188 PRK06526 transposase; Provisio 97.8 2.1E-05 4.6E-10 84.6 5.0 93 510-606 99-199 (254)
189 COG0464 SpoVK ATPases of the A 97.8 9.8E-05 2.1E-09 86.5 10.9 95 507-607 274-387 (494)
190 smart00350 MCM minichromosome 97.8 6.5E-05 1.4E-09 88.6 9.0 130 475-606 194-351 (509)
191 PTZ00454 26S protease regulato 97.8 0.00016 3.5E-09 82.7 11.8 138 86-255 178-317 (398)
192 PLN00020 ribulose bisphosphate 97.8 0.00013 2.8E-09 81.9 10.6 95 507-608 146-278 (413)
193 COG0464 SpoVK ATPases of the A 97.7 0.0002 4.4E-09 83.9 12.4 150 72-256 251-412 (494)
194 PRK00411 cdc6 cell division co 97.7 0.00047 1E-08 78.1 14.6 157 68-255 32-208 (394)
195 PRK10865 protein disaggregatio 97.7 8.3E-05 1.8E-09 92.6 9.2 115 484-606 178-315 (857)
196 COG2204 AtoC Response regulato 97.7 0.0001 2.2E-09 85.2 8.6 123 482-606 139-284 (464)
197 PRK08939 primosomal protein Dn 97.7 0.00017 3.7E-09 79.8 9.9 98 506-606 153-259 (306)
198 PRK10365 transcriptional regul 97.7 0.00083 1.8E-08 77.1 15.9 89 508-596 161-262 (441)
199 PRK06835 DNA replication prote 97.6 0.00017 3.7E-09 80.5 9.2 95 510-606 184-287 (329)
200 PF01695 IstB_IS21: IstB-like 97.6 7.9E-05 1.7E-09 76.0 5.9 95 509-606 47-148 (178)
201 PTZ00111 DNA replication licen 97.6 0.00017 3.6E-09 88.8 9.5 132 475-606 441-608 (915)
202 PF13401 AAA_22: AAA domain; P 97.6 0.00012 2.6E-09 69.2 6.6 88 509-596 4-117 (131)
203 KOG0735 AAA+-type ATPase [Post 97.6 0.0039 8.4E-08 74.3 20.0 83 86-180 430-512 (952)
204 PRK06921 hypothetical protein; 97.6 9.3E-05 2E-09 80.2 6.2 96 508-606 116-223 (266)
205 TIGR03015 pepcterm_ATPase puta 97.6 0.0034 7.3E-08 67.1 18.0 83 509-591 43-147 (269)
206 PRK05917 DNA polymerase III su 97.5 0.00038 8.2E-09 76.3 10.2 102 505-607 15-134 (290)
207 PRK10733 hflB ATP-dependent me 97.5 0.00025 5.3E-09 86.0 9.6 91 512-606 188-298 (644)
208 PF01637 Arch_ATPase: Archaeal 97.5 0.00017 3.6E-09 74.2 7.0 142 70-232 3-170 (234)
209 PRK08181 transposase; Validate 97.5 0.00012 2.6E-09 79.5 6.2 94 510-606 107-207 (269)
210 KOG2028 ATPase related to the 97.5 0.00012 2.7E-09 80.9 6.1 131 486-622 140-276 (554)
211 COG1221 PspF Transcriptional r 97.5 0.00017 3.7E-09 82.0 7.5 123 483-607 77-223 (403)
212 PRK09862 putative ATP-dependen 97.5 0.00012 2.6E-09 85.8 6.5 116 485-607 192-346 (506)
213 PRK13342 recombination factor 97.5 0.00038 8.3E-09 79.9 10.3 131 70-252 16-149 (413)
214 PRK10733 hflB ATP-dependent me 97.5 0.00074 1.6E-08 81.9 12.9 136 87-255 185-323 (644)
215 PLN00020 ribulose bisphosphate 97.5 0.00049 1.1E-08 77.4 10.0 135 91-254 152-300 (413)
216 PRK11034 clpA ATP-dependent Cl 97.5 0.00033 7.1E-09 86.0 9.3 115 484-606 186-323 (758)
217 COG1484 DnaC DNA replication p 97.4 0.00023 5E-09 76.7 6.9 96 509-607 105-208 (254)
218 cd00009 AAA The AAA+ (ATPases 97.4 0.00077 1.7E-08 63.2 9.4 93 70-174 2-96 (151)
219 COG0606 Predicted ATPase with 97.4 0.00028 6E-09 81.0 7.1 106 485-596 180-312 (490)
220 PRK13765 ATP-dependent proteas 97.4 0.0003 6.5E-09 84.7 7.8 54 477-536 24-77 (637)
221 PRK09183 transposase/IS protei 97.4 0.00038 8.3E-09 75.2 7.6 94 510-606 103-204 (259)
222 PRK05818 DNA polymerase III su 97.4 0.00092 2E-08 72.1 10.1 93 511-607 9-127 (261)
223 COG2256 MGS1 ATPase related to 97.4 0.00051 1.1E-08 77.3 8.3 108 70-227 34-141 (436)
224 PTZ00112 origin recognition co 97.3 0.0022 4.7E-08 78.5 13.4 150 68-244 757-926 (1164)
225 KOG0736 Peroxisome assembly fa 97.3 0.00098 2.1E-08 79.8 10.1 132 81-242 697-830 (953)
226 CHL00206 ycf2 Ycf2; Provisiona 97.3 0.00052 1.1E-08 89.0 8.2 94 510-606 1631-1780(2281)
227 KOG0738 AAA+-type ATPase [Post 97.3 0.00092 2E-08 74.8 8.8 118 486-606 214-359 (491)
228 KOG0744 AAA+-type ATPase [Post 97.2 0.0013 2.9E-08 72.1 9.7 109 492-606 154-305 (423)
229 PF05496 RuvB_N: Holliday junc 97.2 0.0011 2.4E-08 70.1 8.8 80 71-174 28-113 (233)
230 PRK07276 DNA polymerase III su 97.2 0.0014 3E-08 72.0 10.0 114 488-607 6-143 (290)
231 KOG0743 AAA+-type ATPase [Post 97.2 0.00037 8.1E-09 79.4 5.7 95 504-607 229-347 (457)
232 TIGR02524 dot_icm_DotB Dot/Icm 97.2 0.0011 2.5E-08 74.9 9.4 86 508-596 133-239 (358)
233 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0009 1.9E-08 78.4 8.4 114 486-606 192-337 (802)
234 cd01131 PilT Pilus retraction 97.2 0.0014 3.1E-08 67.7 9.1 84 510-596 2-101 (198)
235 COG3829 RocR Transcriptional r 97.2 0.0063 1.4E-07 71.1 14.9 120 484-606 245-389 (560)
236 PF05621 TniB: Bacterial TniB 97.1 0.0019 4.1E-08 71.0 9.8 137 88-253 62-212 (302)
237 PF06068 TIP49: TIP49 C-termin 97.1 0.00097 2.1E-08 74.8 7.7 81 485-566 25-106 (398)
238 COG1224 TIP49 DNA helicase TIP 97.1 0.0011 2.4E-08 73.6 7.8 81 484-565 39-120 (450)
239 PF00931 NB-ARC: NB-ARC domain 97.1 0.0019 4.2E-08 69.5 9.4 112 490-607 2-138 (287)
240 cd01129 PulE-GspE PulE/GspE Th 97.1 0.0023 5E-08 69.4 9.8 86 508-596 79-176 (264)
241 KOG0734 AAA+-type ATPase conta 97.1 0.0035 7.6E-08 72.6 11.1 149 72-256 313-473 (752)
242 PF03215 Rad17: Rad17 cell cyc 97.0 0.011 2.4E-07 69.9 15.7 95 510-604 46-173 (519)
243 TIGR01420 pilT_fam pilus retra 97.0 0.002 4.2E-08 72.5 9.0 86 508-596 121-222 (343)
244 PRK07132 DNA polymerase III su 97.0 0.0066 1.4E-07 67.1 12.8 107 492-606 4-128 (299)
245 KOG0734 AAA+-type ATPase conta 96.9 0.0016 3.5E-08 75.3 7.1 88 484-578 304-407 (752)
246 COG0593 DnaA ATPase involved i 96.9 0.015 3.3E-07 66.6 14.9 103 494-606 99-216 (408)
247 PF00910 RNA_helicase: RNA hel 96.9 0.0022 4.8E-08 59.8 6.8 82 513-606 2-106 (107)
248 CHL00206 ycf2 Ycf2; Provisiona 96.9 0.004 8.6E-08 81.3 11.1 134 86-255 1629-1805(2281)
249 COG1474 CDC6 Cdc6-related prot 96.9 0.0064 1.4E-07 69.0 11.4 121 486-608 19-166 (366)
250 TIGR02538 type_IV_pilB type IV 96.9 0.0035 7.6E-08 75.0 9.6 87 507-596 314-412 (564)
251 PF13191 AAA_16: AAA ATPase do 96.9 0.00077 1.7E-08 67.3 3.5 62 486-548 2-63 (185)
252 PF05729 NACHT: NACHT domain 96.9 0.003 6.5E-08 61.6 7.5 96 512-607 3-129 (166)
253 KOG0730 AAA+-type ATPase [Post 96.9 0.0036 7.9E-08 74.2 9.3 151 70-255 437-603 (693)
254 PF00437 T2SE: Type II/IV secr 96.8 0.0029 6.3E-08 68.2 7.6 84 509-596 127-223 (270)
255 TIGR00635 ruvB Holliday juncti 96.8 0.0038 8.3E-08 68.3 8.5 83 70-176 8-95 (305)
256 PRK13341 recombination factor 96.8 0.0043 9.3E-08 76.1 9.7 135 70-255 32-169 (725)
257 KOG0651 26S proteasome regulat 96.7 0.0037 8E-08 68.5 7.5 95 507-608 164-281 (388)
258 cd01120 RecA-like_NTPases RecA 96.7 0.0073 1.6E-07 58.3 9.0 95 512-606 2-135 (165)
259 KOG0741 AAA+-type ATPase [Post 96.7 0.004 8.6E-08 72.1 8.0 82 508-592 537-629 (744)
260 KOG0732 AAA+-type ATPase conta 96.7 0.0026 5.6E-08 79.2 7.0 98 507-606 298-414 (1080)
261 COG2804 PulE Type II secretory 96.7 0.0066 1.4E-07 70.6 9.8 92 507-606 256-359 (500)
262 KOG0736 Peroxisome assembly fa 96.7 0.0028 6.2E-08 76.0 6.7 90 70-175 405-503 (953)
263 KOG0731 AAA+-type ATPase conta 96.7 0.0027 5.9E-08 76.9 6.6 118 484-606 311-458 (774)
264 COG0465 HflB ATP-dependent Zn 96.6 0.0029 6.3E-08 75.2 6.4 115 485-606 151-296 (596)
265 PRK10436 hypothetical protein; 96.6 0.0081 1.7E-07 70.2 9.9 87 507-596 216-314 (462)
266 TIGR01618 phage_P_loop phage n 96.6 0.0032 6.8E-08 66.6 5.8 74 509-587 12-101 (220)
267 PF13604 AAA_30: AAA domain; P 96.6 0.0088 1.9E-07 61.9 9.0 98 488-593 5-119 (196)
268 PRK05703 flhF flagellar biosyn 96.6 0.026 5.5E-07 65.4 13.6 97 510-606 222-341 (424)
269 PRK05342 clpX ATP-dependent pr 96.6 0.0053 1.1E-07 70.7 8.0 78 86-177 107-188 (412)
270 TIGR02533 type_II_gspE general 96.6 0.0077 1.7E-07 70.9 9.3 87 507-596 240-338 (486)
271 PHA02544 44 clamp loader, smal 96.5 0.02 4.2E-07 63.1 11.9 137 69-255 24-161 (316)
272 PRK15455 PrkA family serine pr 96.5 0.003 6.5E-08 74.7 5.7 48 486-533 78-127 (644)
273 TIGR02525 plasmid_TraJ plasmid 96.5 0.0086 1.9E-07 68.1 9.1 85 509-596 149-252 (372)
274 PRK13894 conjugal transfer ATP 96.5 0.016 3.5E-07 64.7 10.8 85 509-597 148-246 (319)
275 smart00382 AAA ATPases associa 96.5 0.0058 1.3E-07 56.4 6.2 81 87-178 2-94 (148)
276 PRK00080 ruvB Holliday junctio 96.5 0.0099 2.1E-07 66.2 9.1 83 69-175 28-115 (328)
277 KOG2028 ATPase related to the 96.5 0.01 2.2E-07 66.3 8.8 97 86-226 161-258 (554)
278 cd01128 rho_factor Transcripti 96.4 0.022 4.7E-07 61.5 10.9 139 76-224 4-163 (249)
279 KOG0739 AAA+-type ATPase [Post 96.4 0.0042 9.2E-08 67.6 5.3 69 507-578 164-236 (439)
280 KOG2035 Replication factor C, 96.4 0.0054 1.2E-07 66.3 6.1 97 510-607 35-166 (351)
281 cd01130 VirB11-like_ATPase Typ 96.4 0.012 2.5E-07 60.3 8.4 84 509-597 25-127 (186)
282 PRK11331 5-methylcytosine-spec 96.4 0.011 2.4E-07 68.5 9.0 43 70-114 179-221 (459)
283 KOG0726 26S proteasome regulat 96.4 0.0074 1.6E-07 65.6 7.0 119 486-607 187-333 (440)
284 PRK13406 bchD magnesium chelat 96.4 0.041 8.9E-07 66.1 14.0 84 508-596 24-122 (584)
285 PRK12724 flagellar biosynthesi 96.3 0.033 7.2E-07 64.1 12.4 97 510-606 224-343 (432)
286 KOG0737 AAA+-type ATPase [Post 96.3 0.0036 7.9E-08 69.9 4.4 96 475-578 97-197 (386)
287 TIGR02782 TrbB_P P-type conjug 96.2 0.026 5.6E-07 62.4 10.5 84 510-597 133-231 (299)
288 PRK13833 conjugal transfer pro 96.2 0.028 6E-07 62.9 10.6 83 511-597 146-242 (323)
289 KOG0729 26S proteasome regulat 96.2 0.0085 1.8E-07 64.3 6.1 94 511-607 213-325 (435)
290 PF13401 AAA_22: AAA domain; P 96.2 0.0086 1.9E-07 56.6 5.7 85 85-175 2-100 (131)
291 PRK14956 DNA polymerase III su 96.2 0.0071 1.5E-07 70.6 6.0 124 70-227 22-160 (484)
292 COG2607 Predicted ATPase (AAA+ 96.2 0.043 9.2E-07 58.6 11.0 106 497-607 73-183 (287)
293 PRK12723 flagellar biosynthesi 96.1 0.02 4.4E-07 65.5 9.4 97 510-606 175-296 (388)
294 COG2255 RuvB Holliday junction 96.1 0.0085 1.9E-07 65.1 5.6 82 70-175 29-116 (332)
295 PLN03210 Resistant to P. syrin 96.1 0.032 7E-07 72.3 12.0 95 508-606 206-332 (1153)
296 COG1239 ChlI Mg-chelatase subu 96.1 0.036 7.8E-07 63.3 10.8 120 481-607 14-196 (423)
297 COG1222 RPT1 ATP-dependent 26S 96.1 0.024 5.1E-07 63.5 9.1 155 70-255 155-323 (406)
298 PF05673 DUF815: Protein of un 96.0 0.025 5.5E-07 60.6 8.7 82 70-172 31-116 (249)
299 PF07728 AAA_5: AAA domain (dy 96.0 0.0015 3.3E-08 62.9 -0.4 33 89-131 1-33 (139)
300 COG4650 RtcR Sigma54-dependent 96.0 0.017 3.7E-07 62.7 7.3 125 467-596 171-311 (531)
301 COG0542 clpA ATP-binding subun 96.0 0.023 5E-07 69.6 9.2 111 485-601 171-304 (786)
302 PF00448 SRP54: SRP54-type pro 96.0 0.018 3.9E-07 59.8 7.3 96 511-606 3-124 (196)
303 KOG0738 AAA+-type ATPase [Post 95.9 0.047 1E-06 61.6 10.5 80 84-179 242-321 (491)
304 KOG0728 26S proteasome regulat 95.9 0.018 3.9E-07 61.5 6.8 96 508-607 181-295 (404)
305 PRK12608 transcription termina 95.9 0.037 8E-07 62.9 9.7 101 73-178 118-236 (380)
306 TIGR00064 ftsY signal recognit 95.9 0.084 1.8E-06 57.7 12.2 59 489-547 43-110 (272)
307 TIGR03420 DnaA_homol_Hda DnaA 95.9 0.039 8.5E-07 57.4 9.4 81 73-176 24-104 (226)
308 PRK08084 DNA replication initi 95.9 0.033 7.1E-07 59.3 8.8 113 85-243 43-155 (235)
309 TIGR02688 conserved hypothetic 95.8 0.043 9.3E-07 63.2 9.9 103 488-606 191-311 (449)
310 TIGR03015 pepcterm_ATPase puta 95.8 0.043 9.3E-07 58.6 9.5 33 83-115 39-71 (269)
311 PRK08903 DnaA regulatory inact 95.8 0.034 7.5E-07 58.3 8.5 78 70-174 23-102 (227)
312 PRK14722 flhF flagellar biosyn 95.8 0.12 2.6E-06 58.9 13.4 98 509-606 137-256 (374)
313 TIGR03819 heli_sec_ATPase heli 95.8 0.044 9.6E-07 61.7 9.8 83 510-597 179-280 (340)
314 TIGR02640 gas_vesic_GvpN gas v 95.7 0.025 5.4E-07 61.2 7.5 37 73-111 9-45 (262)
315 PRK13531 regulatory ATPase Rav 95.7 0.016 3.5E-07 67.7 6.2 45 69-115 23-67 (498)
316 TIGR02788 VirB11 P-type DNA tr 95.7 0.03 6.5E-07 62.1 8.0 83 509-596 144-244 (308)
317 PRK09376 rho transcription ter 95.7 0.055 1.2E-06 61.8 10.1 100 73-178 154-272 (416)
318 PRK11889 flhF flagellar biosyn 95.6 0.12 2.6E-06 59.3 12.5 118 489-606 216-361 (436)
319 COG3283 TyrR Transcriptional r 95.6 0.067 1.4E-06 59.9 10.1 116 485-606 205-342 (511)
320 TIGR03499 FlhF flagellar biosy 95.6 0.081 1.8E-06 58.0 10.8 36 509-544 194-233 (282)
321 PRK14974 cell division protein 95.5 0.14 3.1E-06 57.6 12.8 98 509-606 140-263 (336)
322 PF01637 Arch_ATPase: Archaeal 95.5 0.041 8.9E-07 56.5 7.9 97 509-605 20-163 (234)
323 PF13207 AAA_17: AAA domain; P 95.5 0.011 2.3E-07 55.4 3.2 31 512-547 2-32 (121)
324 KOG0991 Replication factor C, 95.5 0.051 1.1E-06 57.7 8.3 113 486-608 29-153 (333)
325 COG0529 CysC Adenylylsulfate k 95.5 0.019 4.1E-07 58.7 4.9 60 485-547 2-61 (197)
326 PRK00771 signal recognition pa 95.4 0.17 3.6E-06 59.0 13.3 39 509-547 95-133 (437)
327 PRK13900 type IV secretion sys 95.4 0.074 1.6E-06 59.8 9.9 83 510-597 161-262 (332)
328 TIGR01425 SRP54_euk signal rec 95.4 0.14 3.1E-06 59.3 12.3 98 509-606 100-223 (429)
329 cd03216 ABC_Carb_Monos_I This 95.4 0.052 1.1E-06 54.3 7.8 97 508-606 25-140 (163)
330 COG3899 Predicted ATPase [Gene 95.4 0.046 1E-06 68.6 9.0 45 70-114 4-51 (849)
331 PRK10867 signal recognition pa 95.3 0.13 2.8E-06 59.8 11.8 98 509-606 100-224 (433)
332 PRK14961 DNA polymerase III su 95.3 0.068 1.5E-06 60.6 9.4 43 70-112 20-63 (363)
333 cd02019 NK Nucleoside/nucleoti 95.3 0.036 7.8E-07 47.6 5.5 61 512-574 2-62 (69)
334 PHA00729 NTP-binding motif con 95.3 0.043 9.4E-07 58.3 7.1 25 510-534 18-42 (226)
335 KOG1969 DNA replication checkp 95.3 0.032 7E-07 67.1 6.7 81 506-592 322-412 (877)
336 PF05272 VirE: Virulence-assoc 95.2 0.044 9.5E-07 57.1 6.8 88 507-609 50-151 (198)
337 TIGR00382 clpX endopeptidase C 95.2 0.036 7.7E-07 63.9 6.6 77 87-177 116-196 (413)
338 COG3854 SpoIIIAA ncharacterize 95.2 0.042 9.1E-07 58.3 6.4 133 77-251 127-275 (308)
339 PF12774 AAA_6: Hydrolytic ATP 95.2 0.033 7.1E-07 59.4 5.9 77 509-593 33-110 (231)
340 PRK05642 DNA replication initi 95.2 0.15 3.3E-06 54.3 10.9 125 72-243 26-154 (234)
341 COG5271 MDN1 AAA ATPase contai 95.1 0.034 7.3E-07 71.3 6.4 91 511-606 890-1007(4600)
342 cd01124 KaiC KaiC is a circadi 95.1 0.068 1.5E-06 53.7 7.6 34 512-545 2-35 (187)
343 PRK07003 DNA polymerase III su 95.1 0.09 1.9E-06 64.4 9.8 44 70-113 20-64 (830)
344 COG1474 CDC6 Cdc6-related prot 95.0 0.18 3.9E-06 57.4 11.6 146 69-248 20-184 (366)
345 PRK14949 DNA polymerase III su 95.0 0.065 1.4E-06 66.7 8.5 127 70-230 20-161 (944)
346 TIGR01613 primase_Cterm phage/ 95.0 0.098 2.1E-06 57.7 9.3 121 479-607 44-181 (304)
347 PRK06696 uridine kinase; Valid 95.0 0.047 1E-06 57.5 6.3 58 490-548 4-61 (223)
348 TIGR01359 UMP_CMP_kin_fam UMP- 95.0 0.1 2.2E-06 52.7 8.5 31 512-547 2-32 (183)
349 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.9 0.1 2.2E-06 51.3 8.2 94 508-606 25-125 (144)
350 PRK13851 type IV secretion sys 94.9 0.066 1.4E-06 60.4 7.7 84 509-597 162-263 (344)
351 KOG0735 AAA+-type ATPase [Post 94.9 0.031 6.7E-07 67.0 5.2 69 509-578 431-505 (952)
352 PF07724 AAA_2: AAA domain (Cd 94.9 0.014 3E-07 59.4 2.0 81 86-177 2-83 (171)
353 PF03969 AFG1_ATPase: AFG1-lik 94.8 0.12 2.6E-06 58.7 9.5 95 509-606 62-166 (362)
354 cd03238 ABC_UvrA The excision 94.7 0.083 1.8E-06 54.0 7.0 98 508-606 20-147 (176)
355 PF04851 ResIII: Type III rest 94.7 0.044 9.6E-07 54.2 5.0 46 487-535 6-51 (184)
356 cd03222 ABC_RNaseL_inhibitor T 94.6 0.14 3E-06 52.5 8.4 97 508-606 24-130 (177)
357 PRK07994 DNA polymerase III su 94.6 0.12 2.6E-06 62.8 9.2 99 70-176 20-133 (647)
358 COG1373 Predicted ATPase (AAA+ 94.6 0.093 2E-06 60.4 7.9 90 511-606 39-130 (398)
359 PRK12402 replication factor C 94.5 0.18 4E-06 55.6 10.0 45 69-113 18-62 (337)
360 PRK12726 flagellar biosynthesi 94.5 0.31 6.7E-06 55.8 11.7 98 508-605 205-325 (407)
361 PRK12323 DNA polymerase III su 94.5 0.17 3.8E-06 61.2 10.2 124 70-227 20-163 (700)
362 PRK14960 DNA polymerase III su 94.4 0.23 5E-06 60.2 11.1 99 70-176 19-132 (702)
363 KOG1051 Chaperone HSP104 and r 94.4 0.0049 1.1E-07 76.2 -3.0 113 683-812 763-875 (898)
364 cd01121 Sms Sms (bacterial rad 94.4 0.12 2.7E-06 58.9 8.4 99 508-606 81-208 (372)
365 PF12775 AAA_7: P-loop contain 94.4 0.081 1.7E-06 57.8 6.6 36 75-111 22-57 (272)
366 PRK00440 rfc replication facto 94.4 0.22 4.7E-06 54.5 10.0 97 69-176 20-116 (319)
367 PRK12727 flagellar biosynthesi 94.3 0.34 7.3E-06 57.6 11.9 96 508-606 349-468 (559)
368 COG1618 Predicted nucleotide k 94.3 0.11 2.4E-06 52.5 6.8 87 510-596 6-132 (179)
369 PRK14962 DNA polymerase III su 94.3 0.26 5.6E-06 58.0 11.1 144 70-254 18-176 (472)
370 PHA02774 E1; Provisional 94.3 0.13 2.8E-06 61.3 8.5 99 495-606 419-531 (613)
371 PF12775 AAA_7: P-loop contain 94.3 0.078 1.7E-06 57.9 6.3 95 511-606 35-156 (272)
372 PF00931 NB-ARC: NB-ARC domain 94.3 0.13 2.8E-06 55.3 7.9 96 71-174 1-113 (287)
373 smart00487 DEXDc DEAD-like hel 94.2 0.11 2.3E-06 51.2 6.6 40 487-535 11-51 (201)
374 COG1484 DnaC DNA replication p 94.2 0.11 2.5E-06 56.1 7.2 84 73-174 93-179 (254)
375 COG1219 ClpX ATP-dependent pro 94.2 0.079 1.7E-06 58.6 5.9 81 86-176 96-176 (408)
376 PRK05541 adenylylsulfate kinas 94.2 0.086 1.9E-06 53.1 5.9 38 509-546 7-44 (176)
377 cd03283 ABC_MutS-like MutS-lik 94.2 0.19 4.2E-06 52.2 8.6 24 510-533 26-49 (199)
378 PRK14958 DNA polymerase III su 94.2 0.25 5.5E-06 58.6 10.6 99 70-176 20-133 (509)
379 PRK06067 flagellar accessory p 94.1 0.21 4.4E-06 52.8 8.9 98 509-606 25-163 (234)
380 KOG3347 Predicted nucleotide k 94.1 0.067 1.5E-06 53.4 4.7 82 511-608 9-104 (176)
381 smart00534 MUTSac ATPase domai 94.1 0.2 4.4E-06 51.2 8.5 94 512-606 2-120 (185)
382 PRK06581 DNA polymerase III su 94.1 0.39 8.4E-06 51.8 10.6 96 510-606 16-127 (263)
383 PF04548 AIG1: AIG1 family; I 94.0 0.099 2.1E-06 54.7 6.2 96 511-606 2-126 (212)
384 PF00158 Sigma54_activat: Sigm 94.0 0.12 2.7E-06 52.4 6.6 90 70-175 3-106 (168)
385 PRK10416 signal recognition pa 94.0 0.86 1.9E-05 51.0 13.9 40 508-547 113-152 (318)
386 PRK08181 transposase; Validate 94.0 0.058 1.3E-06 58.9 4.5 76 86-175 105-180 (269)
387 cd03247 ABCC_cytochrome_bd The 94.0 0.19 4.1E-06 50.8 8.0 96 509-607 28-156 (178)
388 KOG1942 DNA helicase, TBP-inte 94.0 0.095 2.1E-06 57.3 5.9 63 484-547 38-101 (456)
389 PRK04195 replication factor C 94.0 0.17 3.6E-06 59.7 8.6 92 69-176 17-112 (482)
390 TIGR00767 rho transcription te 93.9 0.082 1.8E-06 60.6 5.7 38 77-114 157-195 (415)
391 PLN03025 replication factor C 93.9 0.32 6.8E-06 54.1 10.2 97 70-176 17-113 (319)
392 cd03115 SRP The signal recogni 93.9 0.24 5.2E-06 49.6 8.5 37 511-547 2-38 (173)
393 TIGR02858 spore_III_AA stage I 93.9 0.11 2.3E-06 56.9 6.3 91 511-607 113-228 (270)
394 PRK13764 ATPase; Provisional 93.8 0.17 3.6E-06 61.0 8.2 82 511-595 259-350 (602)
395 TIGR00455 apsK adenylylsulfate 93.8 0.61 1.3E-05 47.3 11.2 89 504-594 13-115 (184)
396 KOG0740 AAA+-type ATPase [Post 93.7 0.26 5.6E-06 56.9 9.2 72 91-178 190-261 (428)
397 PF06414 Zeta_toxin: Zeta toxi 93.7 0.2 4.3E-06 51.8 7.7 92 510-606 16-130 (199)
398 KOG1808 AAA ATPase containing 93.7 0.079 1.7E-06 69.9 5.6 80 511-595 442-535 (1856)
399 PRK10536 hypothetical protein; 93.7 0.13 2.8E-06 55.8 6.3 26 511-536 76-102 (262)
400 PRK04296 thymidine kinase; Pro 93.7 0.18 3.9E-06 52.0 7.2 91 512-606 5-114 (190)
401 COG5271 MDN1 AAA ATPase contai 93.7 0.2 4.3E-06 64.9 8.5 81 511-596 151-245 (4600)
402 KOG0741 AAA+-type ATPase [Post 93.6 0.079 1.7E-06 61.8 4.8 121 470-607 226-378 (744)
403 KOG0740 AAA+-type ATPase [Post 93.6 0.11 2.3E-06 60.0 5.8 68 508-578 185-256 (428)
404 cd03223 ABCD_peroxisomal_ALDP 93.6 0.45 9.8E-06 47.7 9.8 94 508-605 26-146 (166)
405 TIGR00959 ffh signal recogniti 93.6 0.71 1.5E-05 53.7 12.6 98 509-606 99-223 (428)
406 cd03246 ABCC_Protease_Secretio 93.6 0.38 8.3E-06 48.4 9.3 96 509-606 28-154 (173)
407 PRK08727 hypothetical protein; 93.5 0.36 7.8E-06 51.3 9.4 67 89-178 43-109 (233)
408 cd00267 ABC_ATPase ABC (ATP-bi 93.5 0.27 5.9E-06 48.5 8.0 97 509-607 25-139 (157)
409 cd03228 ABCC_MRP_Like The MRP 93.5 0.28 6E-06 49.3 8.0 98 507-607 26-154 (171)
410 cd03214 ABC_Iron-Siderophores_ 93.4 0.29 6.2E-06 49.7 8.2 98 508-607 24-157 (180)
411 TIGR01447 recD exodeoxyribonuc 93.4 0.14 3E-06 61.8 6.7 28 567-594 259-286 (586)
412 cd03227 ABC_Class2 ABC-type Cl 93.4 0.25 5.5E-06 49.3 7.7 97 510-606 22-139 (162)
413 TIGR00991 3a0901s02IAP34 GTP-b 93.4 0.63 1.4E-05 51.9 11.3 117 466-607 15-164 (313)
414 KOG0737 AAA+-type ATPase [Post 93.4 0.28 6.1E-06 55.3 8.6 76 87-179 127-203 (386)
415 PF13173 AAA_14: AAA domain 93.4 0.16 3.6E-06 48.5 6.0 72 87-174 2-73 (128)
416 COG1223 Predicted ATPase (AAA+ 93.4 0.16 3.5E-06 54.9 6.3 127 86-245 150-276 (368)
417 TIGR00763 lon ATP-dependent pr 93.3 0.19 4.1E-06 62.6 7.8 92 70-176 324-428 (775)
418 cd03243 ABC_MutS_homologs The 93.2 0.43 9.2E-06 49.4 9.2 25 510-534 30-54 (202)
419 cd01853 Toc34_like Toc34-like 93.1 0.36 7.7E-06 52.2 8.6 100 508-607 30-160 (249)
420 PF13238 AAA_18: AAA domain; P 93.1 0.073 1.6E-06 49.7 3.0 22 512-533 1-22 (129)
421 PRK07940 DNA polymerase III su 93.1 0.63 1.4E-05 53.6 11.0 125 89-255 38-177 (394)
422 PRK11823 DNA repair protein Ra 93.0 0.26 5.7E-06 57.6 8.1 99 508-606 79-206 (446)
423 cd03230 ABC_DR_subfamily_A Thi 93.0 0.31 6.8E-06 49.0 7.7 97 508-606 25-153 (173)
424 TIGR02902 spore_lonB ATP-depen 93.0 0.23 5E-06 59.3 7.6 61 70-131 69-130 (531)
425 COG3854 SpoIIIAA ncharacterize 92.9 0.13 2.8E-06 54.7 4.8 85 509-595 135-244 (308)
426 COG4178 ABC-type uncharacteriz 92.9 0.47 1E-05 57.0 10.0 99 507-607 417-573 (604)
427 PRK14729 miaA tRNA delta(2)-is 92.9 0.085 1.8E-06 58.5 3.6 33 511-547 6-38 (300)
428 PRK00131 aroK shikimate kinase 92.8 0.1 2.2E-06 51.7 3.7 24 510-533 5-28 (175)
429 KOG0739 AAA+-type ATPase [Post 92.8 0.56 1.2E-05 51.7 9.4 134 88-255 167-300 (439)
430 PF12780 AAA_8: P-loop contain 92.8 0.6 1.3E-05 51.0 9.8 97 490-597 14-119 (268)
431 TIGR03574 selen_PSTK L-seryl-t 92.7 0.26 5.7E-06 52.6 6.9 33 512-544 2-34 (249)
432 PF13671 AAA_33: AAA domain; P 92.7 0.079 1.7E-06 50.8 2.7 23 512-534 2-24 (143)
433 PHA02244 ATPase-like protein 92.7 0.26 5.6E-06 56.1 7.0 37 73-111 107-143 (383)
434 KOG2680 DNA helicase TIP49, TB 92.7 0.14 3.1E-06 56.1 4.8 82 484-566 40-122 (454)
435 PRK14969 DNA polymerase III su 92.6 0.45 9.7E-06 56.8 9.3 43 70-112 20-63 (527)
436 cd03229 ABC_Class3 This class 92.5 0.52 1.1E-05 47.7 8.5 97 508-606 25-159 (178)
437 PF05970 PIF1: PIF1-like helic 92.5 0.59 1.3E-05 53.1 9.8 111 488-604 5-147 (364)
438 PRK08118 topology modulation p 92.5 0.11 2.4E-06 52.4 3.5 30 512-544 4-33 (167)
439 PRK14951 DNA polymerase III su 92.5 0.62 1.3E-05 56.6 10.3 44 70-113 20-64 (618)
440 PRK06526 transposase; Provisio 92.5 0.096 2.1E-06 56.7 3.2 28 86-113 97-124 (254)
441 TIGR00174 miaA tRNA isopenteny 92.4 0.36 7.7E-06 53.3 7.6 77 512-596 2-90 (287)
442 TIGR02903 spore_lon_C ATP-depe 92.4 0.6 1.3E-05 56.8 10.2 61 70-130 158-218 (615)
443 KOG0990 Replication factor C, 92.4 0.1 2.2E-06 57.9 3.2 114 486-606 43-169 (360)
444 PF01583 APS_kinase: Adenylyls 92.4 0.23 4.9E-06 50.0 5.5 39 510-548 3-41 (156)
445 PRK08533 flagellar accessory p 92.3 0.3 6.6E-06 51.9 6.7 98 509-606 24-161 (230)
446 PRK14086 dnaA chromosomal repl 92.3 0.59 1.3E-05 56.5 9.8 80 87-178 313-393 (617)
447 PRK14957 DNA polymerase III su 92.2 0.83 1.8E-05 54.7 10.8 98 70-175 20-132 (546)
448 TIGR00416 sms DNA repair prote 92.2 0.45 9.7E-06 55.8 8.5 99 508-606 93-220 (454)
449 PF00308 Bac_DnaA: Bacterial d 92.2 0.49 1.1E-05 50.0 8.0 94 72-177 16-112 (219)
450 TIGR00362 DnaA chromosomal rep 92.1 0.56 1.2E-05 53.8 9.2 77 88-177 136-214 (405)
451 COG1131 CcmA ABC-type multidru 92.1 0.47 1E-05 52.4 8.1 99 508-607 30-196 (293)
452 KOG0745 Putative ATP-dependent 92.1 0.28 6.1E-06 56.3 6.3 80 86-175 225-304 (564)
453 PRK08233 hypothetical protein; 92.1 0.15 3.3E-06 51.0 3.9 36 510-547 4-39 (182)
454 PRK10875 recD exonuclease V su 92.1 0.53 1.2E-05 57.1 9.2 28 567-594 265-292 (615)
455 COG0563 Adk Adenylate kinase a 92.1 0.11 2.4E-06 53.2 3.0 30 512-546 3-32 (178)
456 PF13479 AAA_24: AAA domain 92.1 0.32 7E-06 50.9 6.5 73 509-588 3-89 (213)
457 PF00493 MCM: MCM2/3/5 family 92.1 0.044 9.5E-07 61.4 0.0 92 507-606 55-172 (331)
458 PRK14527 adenylate kinase; Pro 92.0 0.37 8.1E-06 49.3 6.8 24 510-533 7-30 (191)
459 KOG0729 26S proteasome regulat 92.0 0.66 1.4E-05 50.4 8.7 141 70-242 181-335 (435)
460 TIGR02397 dnaX_nterm DNA polym 92.0 0.88 1.9E-05 50.7 10.3 47 69-115 17-64 (355)
461 cd03239 ABC_SMC_head The struc 91.9 0.67 1.5E-05 47.3 8.5 97 510-607 23-157 (178)
462 COG2805 PilT Tfp pilus assembl 91.9 0.27 5.8E-06 54.3 5.7 87 507-596 123-225 (353)
463 cd03213 ABCG_EPDR ABCG transpo 91.9 0.81 1.8E-05 47.0 9.1 98 508-607 34-170 (194)
464 TIGR02974 phageshock_pspF psp 91.8 0.48 1E-05 53.2 7.9 50 76-133 12-61 (329)
465 cd03281 ABC_MSH5_euk MutS5 hom 91.8 0.95 2.1E-05 47.6 9.6 23 510-532 30-52 (213)
466 PRK11174 cysteine/glutathione 91.8 0.64 1.4E-05 55.9 9.5 97 507-606 374-543 (588)
467 PRK11608 pspF phage shock prot 91.8 0.44 9.5E-06 53.3 7.5 57 70-133 10-68 (326)
468 PRK03846 adenylylsulfate kinas 91.7 0.27 5.9E-06 50.7 5.4 43 505-547 20-62 (198)
469 PRK13947 shikimate kinase; Pro 91.7 0.18 3.9E-06 50.2 4.0 31 511-544 3-33 (171)
470 TIGR01448 recD_rel helicase, p 91.7 0.5 1.1E-05 58.5 8.5 98 487-594 326-443 (720)
471 TIGR02237 recomb_radB DNA repa 91.7 0.37 8E-06 49.7 6.4 39 509-547 12-50 (209)
472 cd02027 APSK Adenosine 5'-phos 91.6 0.18 4E-06 49.8 3.9 33 512-544 2-34 (149)
473 PRK04220 2-phosphoglycerate ki 91.6 0.37 8E-06 53.4 6.5 34 510-545 93-126 (301)
474 PRK07667 uridine kinase; Provi 91.5 0.37 8.1E-06 49.6 6.2 52 494-547 4-55 (193)
475 cd03280 ABC_MutS2 MutS2 homolo 91.4 0.65 1.4E-05 48.0 7.9 21 511-531 30-50 (200)
476 cd03278 ABC_SMC_barmotin Barmo 91.4 1.1 2.5E-05 46.4 9.6 24 510-533 23-46 (197)
477 cd01852 AIG1 AIG1 (avrRpt2-ind 91.4 0.64 1.4E-05 47.7 7.7 95 512-606 3-126 (196)
478 PRK07764 DNA polymerase III su 91.4 1.1 2.4E-05 56.3 11.0 43 70-112 19-62 (824)
479 PRK09183 transposase/IS protei 91.4 0.29 6.2E-06 53.1 5.4 77 85-174 100-176 (259)
480 PRK13695 putative NTPase; Prov 91.4 0.39 8.5E-06 48.3 6.0 39 564-607 94-135 (174)
481 cd02021 GntK Gluconate kinase 91.3 0.19 4E-06 49.1 3.5 22 512-533 2-23 (150)
482 cd03282 ABC_MSH4_euk MutS4 hom 91.2 0.8 1.7E-05 47.9 8.4 24 510-533 30-53 (204)
483 PRK06762 hypothetical protein; 91.2 0.19 4.1E-06 49.9 3.6 32 510-544 3-34 (166)
484 PRK08154 anaerobic benzoate ca 91.1 0.44 9.6E-06 52.9 6.7 67 475-544 98-165 (309)
485 PRK14532 adenylate kinase; Pro 91.1 0.18 3.9E-06 51.2 3.3 31 512-547 3-33 (188)
486 cd03217 ABC_FeS_Assembly ABC-t 91.1 1 2.2E-05 46.5 8.9 98 508-606 25-162 (200)
487 PRK07261 topology modulation p 91.1 0.21 4.5E-06 50.6 3.8 32 512-546 3-34 (171)
488 cd00464 SK Shikimate kinase (S 91.1 0.22 4.8E-06 48.3 3.8 22 512-533 2-23 (154)
489 COG2274 SunT ABC-type bacterio 91.1 0.68 1.5E-05 57.1 8.8 100 507-608 497-669 (709)
490 KOG0742 AAA+-type ATPase [Post 91.1 0.37 8E-06 55.0 5.9 76 88-179 385-460 (630)
491 PRK06921 hypothetical protein; 91.1 0.69 1.5E-05 50.4 7.9 73 86-173 116-188 (266)
492 TIGR02322 phosphon_PhnN phosph 91.0 0.17 3.7E-06 50.9 3.0 25 511-535 3-27 (179)
493 PRK14721 flhF flagellar biosyn 91.0 2.1 4.5E-05 49.8 12.2 98 509-606 191-310 (420)
494 cd00227 CPT Chloramphenicol (C 91.0 0.18 3.8E-06 50.9 3.1 33 511-546 4-36 (175)
495 PRK00889 adenylylsulfate kinas 91.0 0.23 5E-06 49.9 3.9 38 510-547 5-42 (175)
496 cd02023 UMPK Uridine monophosp 91.0 0.23 5E-06 50.9 4.0 22 512-533 2-23 (198)
497 PRK04841 transcriptional regul 90.9 0.51 1.1E-05 59.2 7.8 92 510-606 33-160 (903)
498 cd03287 ABC_MSH3_euk MutS3 hom 90.9 0.98 2.1E-05 48.0 8.7 94 510-606 32-152 (222)
499 PF05729 NACHT: NACHT domain 90.9 1.2 2.5E-05 43.3 8.7 88 90-178 3-97 (166)
500 PRK15177 Vi polysaccharide exp 90.9 0.73 1.6E-05 48.2 7.7 27 510-536 14-40 (213)
No 1
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-112 Score=1005.87 Aligned_cols=668 Identities=25% Similarity=0.401 Sum_probs=476.6
Q ss_pred CCcCCCChHHHHHhhhcccCCCccccccCCCCCCccCCCCCCCcC----cc--ccCCCCcccccccccCCCCCCCCc-HH
Q 003070 1 MREAGFSSTTIKNHIEDSSASSVFQCYTSSGGGVFSSPCSPSSSE----AH--HFINPNTFWQNHALFSSQKPASVS-KE 73 (850)
Q Consensus 1 MrEAGFsS~~VK~~ie~~~~~~~f~c~~~~~~~~~~~p~~~~~~~----~~--~~~np~~~~~~~~~~~~~~~~~gR-de 73 (850)
||||||+|++||++||+++ |.|++|+..+-.. .+ .++||+... + .. .+..|| |+
T Consensus 134 ~reag~~s~~vK~~ve~~~-------------g~~~~~~~~~~~~~~~L~~~~~dl~p~a~~-g--kl---dPvigr~de 194 (898)
T KOG1051|consen 134 MREAGFSSSAVKSAVEQPV-------------GQFRSPSRGPLWPLLFLENYGTDLTPRARQ-G--KL---DPVIGRHDE 194 (898)
T ss_pred HHHhcCChHHHHHHHHhhc-------------cccCCCCcCCccchhHHHhcccccChhhhc-c--CC---CCccCCchH
Confidence 8999999999999999987 3344444211000 11 144554432 0 01 122377 99
Q ss_pred HHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHH
Q 003070 74 DIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRK 153 (850)
Q Consensus 74 eirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~ 153 (850)
||||||+||+||+||||||||+|||||||||+|+|+||++|+||+.|++++++.||+++++++.+.|||||+||++|+++
T Consensus 195 eirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~ 274 (898)
T KOG1051|consen 195 EIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKE 274 (898)
T ss_pred HHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999877677799999999999999
Q ss_pred HhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhh
Q 003070 154 VDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKC 233 (850)
Q Consensus 154 V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~ 233 (850)
|++ +++|||||||||||++|+|++ |++ ++++|+|||++ +||+||||||||++||+||
T Consensus 275 v~~---~~~gvILfigelh~lvg~g~~-------------~~~-----~d~~nlLkp~L--~rg~l~~IGatT~e~Y~k~ 331 (898)
T KOG1051|consen 275 VES---GGGGVILFLGELHWLVGSGSN-------------YGA-----IDAANLLKPLL--ARGGLWCIGATTLETYRKC 331 (898)
T ss_pred Hhc---CCCcEEEEecceeeeecCCCc-------------chH-----HHHHHhhHHHH--hcCCeEEEecccHHHHHHH
Confidence 997 488999999999999998853 334 45679999987 8999999999999999999
Q ss_pred hhcCCcccccccceeeecCCCC-cccccccc---cccccccccccCCCccccCCCCCCcccccchhhcchHhhhhHHHHH
Q 003070 234 QMRQPPLEIQWALQAVSIPSGG-LGLSLHSS---SVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCAECTSNYEEEA 309 (850)
Q Consensus 234 iekdPaLEr~W~LQ~V~Vps~~-~~l~l~~~---s~~~~~~~~s~~~s~v~~~~~l~~~~~~~~~~~~c~~c~~~ye~E~ 309 (850)
|+|||||||||++|.|+||+.+ +...|++. ...++.+.+++. +.+ ....++.. ..+..||++|+.+|++|+
T Consensus 332 iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~-a~~-~a~~~s~~---~~t~r~lpd~aidl~dEa 406 (898)
T KOG1051|consen 332 IEKDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDE-SLF-SAAQLSAR---YITLSFLPDCAIDLEDEA 406 (898)
T ss_pred HhhCcchhhCcceeEeccCcccchhhhhhhhhhhhccccCCccccc-ccc-cccchhhh---hcccCcCchhcccHHHHH
Confidence 9999999999999999999876 22222221 112222222221 111 11222222 245679999999999999
Q ss_pred HHHhccccccCCCCcCcCcccchhhHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccCCCCccc
Q 003070 310 QLFKSGQKKLLPPWLQPHSSSNANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQ 389 (850)
Q Consensus 310 ~~~~~~~~~~lP~wLq~~~~~~~~~~~~~~~L~kkW~~~c~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (850)
++....+..++|+|||+++....+.++++.+|++||+ +.+|+.... ..+....... .+.+ ..|-+ .
T Consensus 407 ~a~~~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d---~~~h~r~~~-----~~~~~~~~~~---~~l~--~~~~~-~ 472 (898)
T KOG1051|consen 407 AALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWN---QALHKRPSL-----ESLAPSKPTQ---QPLS--ASVDS-E 472 (898)
T ss_pred HHHHhhhhhhCCHHHHhhhhhhhhhHHHHHHHHHhhh---hhhcccccc-----cccccccccc---ccch--hhhcc-c
Confidence 9987777889999999995444556788999999999 556654221 1110000000 0000 00000 0
Q ss_pred cccccccCchhhhhcccCCCC-Cchh-hHHHhhccccc-ccccccCcCCCCC------CCCccc-cc-ccccCCCcceee
Q 003070 390 SSIFLDSNSISFAESAMKPHN-SSNS-VAKFRRQQSCS-TIEFNFGNCTRKP------QGVEPR-LD-SLKSNEGKEVKI 458 (850)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~p~~-~~~~-i~~~~r~~s~~-t~e~~~~~~~~~~------~~v~~~-~~-~~~~~~gi~v~t 458 (850)
.++. ......++. .... +++..|+.+++ .+++..+...... ...++. +. ..+.|+|+|++
T Consensus 473 ~s~~--------~~l~~~~~~~~~~~~~~k~~r~~d~~~~~~l~~~~~p~~~~~~~~~~~~~~~~i~~~~s~~tgip~~- 543 (898)
T KOG1051|consen 473 RSVI--------EELKLKKNSLDRNSLLAKAHRPNDYTRETDLRYGRIPDELSEKSNDNQGGESDISEVVSRWTGIPVD- 543 (898)
T ss_pred hhHH--------hhhccccCCcccchhhhcccCCCCcchhhhccccccchhhhhhcccccCCccchhhhhhhhcCCchh-
Confidence 0110 001111111 1111 44555555551 2333322221100 000111 22 34778888884
Q ss_pred ecccCCCcCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhhhC--C--CCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 459 TLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA--K--KATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 459 ~l~lg~s~~~~~~~~~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~g--k--~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
.+...++++|+.|++.|+++|+||++||++||+||++||+| + |++||||+||||||||+||++||++||
T Consensus 544 -------~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F 616 (898)
T KOG1051|consen 544 -------RLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF 616 (898)
T ss_pred -------hhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc
Confidence 44667789999999999999999999999999999999987 4 899999999999999999999999999
Q ss_pred CCCCceEEecCccccC------CCCCchh-----hHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCcc-------
Q 003070 535 GSTDLLFHIDMRKRND------GVSSHSE-----MLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENF------- 596 (850)
Q Consensus 535 gs~~~~i~idms~~~~------~~~~~~~-----~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l------- 596 (850)
|++++|||||||+|++ +||||+| +|||+||++||+|||||||||||++|++.|+|+||+||+
T Consensus 617 gse~~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~ 696 (898)
T KOG1051|consen 617 GSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGRE 696 (898)
T ss_pred CCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcE
Confidence 9999999999999754 6889986 899999999999999999999999999999999999996
Q ss_pred ---CceEEEEecCC-CchhhhhhhhcccccchhheecccCcccccchhhhhhhhccCCCCCccccccccccccccccCCC
Q 003070 597 ---GKVIFVLTKGD-SSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGN 672 (850)
Q Consensus 597 ---~n~Iii~Tsn~-~~~~~e~~~~~~~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 672 (850)
+|||||||||. +.... +... ....+.. .+.+. +... ..+
T Consensus 697 Vd~kN~I~IMTsn~~~~~i~----~~~~-~~~~l~~--------~~~~~-~~~~-----------------------~~k 739 (898)
T KOG1051|consen 697 VDFKNAIFIMTSNVGSSAIA----NDAS-LEEKLLD--------MDEKR-GSYR-----------------------LKK 739 (898)
T ss_pred eeccceEEEEecccchHhhh----cccc-ccccccc--------chhhh-hhhh-----------------------hhh
Confidence 49999999994 32221 1011 1111110 00000 0000 000
Q ss_pred cccccccCcccccccccccCCcCccCCCCCCCCCCCcccch-hhcccCCCCCchhhhcccceEeccCCCCCchhHHHHHH
Q 003070 673 KKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLT-RENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFL 751 (850)
Q Consensus 673 kr~~~~~~s~~~lDLNl~a~e~e~~~~~~~~~~~~~~sd~~-~e~~~~~~~~~efLnriD~~vvF~~l~~~~~~l~~~i~ 751 (850)
++. + +.. .++ +..|.|||+||+|++++|+|+++ +++.+++.
T Consensus 740 ~~v-----~-----------------------------~~~~~~~--~~~~r~Ef~nrid~i~lf~~l~~--~~~~~i~~ 781 (898)
T KOG1051|consen 740 VQV-----S-----------------------------DAVRIYN--KQFFRKEFLNRIDELDLNLPLDR--DELIEIVN 781 (898)
T ss_pred hhh-----h-----------------------------hhhhccc--ccccChHHhcccceeeeecccch--hhHhhhhh
Confidence 000 0 000 011 16899999999999999999999 46777776
Q ss_pred HHHHHHHHHHH-ccCCceEEEeCHHHHHHHHhccC--CcchhHHHHHHHHHHhhHHHHHHhCCCC-CCceEEEeecc
Q 003070 752 AKMKESFDEIF-KRQNKVNFSVEERVLEEVLIGSG--FFHNSLFEKWLKEVFQTSLEAVKIGGKG-GGIEIRLCFGC 824 (850)
Q Consensus 752 ~~~~~~~~~~l-~~~~~~~l~vd~~~~e~l~~~~~--~~~~r~le~wie~vl~~~l~~~~~~g~~-~~~~v~L~~~~ 824 (850)
..+.+ .++++ +.+ +.+.|++++.++++..++ .+|+|+++++|++.|...++.... +.. ...++++..++
T Consensus 782 ~~~~e-~~~r~~~~~--~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~l-~ei~~~~~~~i~~~~ 854 (898)
T KOG1051|consen 782 KQLTE-IEKRLEERE--LLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEALL-GEVEDGLTERILVAD 854 (898)
T ss_pred hHHHH-HHHHhhhhH--HHHHHHHHHHhhhhhcCcChHHHhhHHHHHHHHHHHHHHhhhhe-eeecCCceEEEEecc
Confidence 66654 44444 333 889999999999988863 369999999999999999999988 544 45567776444
No 2
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-111 Score=986.72 Aligned_cols=553 Identities=16% Similarity=0.249 Sum_probs=417.1
Q ss_pred CCcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHH
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLT 148 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rlk 148 (850)
-|||+||+|+|+||+||+||||||||||||||||||||||+||++|+||+.|++++|++|||++|.+|..+|||||+|||
T Consensus 173 IGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk 252 (786)
T COG0542 173 IGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLK 252 (786)
T ss_pred cChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999999766666999999999
Q ss_pred HHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHH
Q 003070 149 ELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQ 228 (850)
Q Consensus 149 eL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~e 228 (850)
.|+++|++ .++|||||||||+|||+|+++| . + ||++|||||+| |||+|+||||||++
T Consensus 253 ~vl~ev~~----~~~vILFIDEiHtiVGAG~~~G-----------~-a-----~DAaNiLKPaL--ARGeL~~IGATT~~ 309 (786)
T COG0542 253 AVLKEVEK----SKNVILFIDEIHTIVGAGATEG-----------G-A-----MDAANLLKPAL--ARGELRCIGATTLD 309 (786)
T ss_pred HHHHHHhc----CCCeEEEEechhhhcCCCcccc-----------c-c-----cchhhhhHHHH--hcCCeEEEEeccHH
Confidence 99999997 3499999999999999997543 1 3 34589999998 99999999999999
Q ss_pred HHHhhhhcCCcccccccceeeecCCCCc--------cccc-----ccccccccccccccCCC-ccccCCCCCCcccccch
Q 003070 229 TYMKCQMRQPPLEIQWALQAVSIPSGGL--------GLSL-----HSSSVHESRLTFSQNPS-QVWETKPFAIKEEEDHK 294 (850)
Q Consensus 229 eY~K~iekdPaLEr~W~LQ~V~Vps~~~--------~l~l-----~~~s~~~~~~~~s~~~s-~v~~~~~l~~~~~~~~~ 294 (850)
||+|||||||||||| ||+|.|.+|+. |++. |+..+.++++.++..+| .++.+++|||++.
T Consensus 310 EYRk~iEKD~AL~RR--FQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAI---- 383 (786)
T COG0542 310 EYRKYIEKDAALERR--FQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAI---- 383 (786)
T ss_pred HHHHHhhhchHHHhc--CceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHH----
Confidence 999999999999996 69999988883 5552 33333444443333333 2335888887762
Q ss_pred hhcchHhhhhHHHHHHHHhccccccCCCCcCcCcccchhhHHHHHHHHHHHHHHhhhhcccccccccccccccccccccc
Q 003070 295 LNCCAECTSNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTG 374 (850)
Q Consensus 295 ~~~c~~c~~~ye~E~~~~~~~~~~~lP~wLq~~~~~~~~~~~~~~~L~kkW~~~c~~lh~~~~~~~~~~~~~~~~~~~~~ 374 (850)
...+|+++....+.. .|..|+.. ..++.+|+..-..+...-..... .....+ .
T Consensus 384 ---------DLiDeA~a~~~l~~~-~p~~l~~~-------~~~~~~l~~e~~~~~~e~~~~~k---~~~~~~---~---- 436 (786)
T COG0542 384 ---------DLLDEAGARVRLEID-KPEELDEL-------ERELAQLEIEKEALEREQDEKEK---KLIDEI---I---- 436 (786)
T ss_pred ---------HHHHHHHHHHHhccc-CCcchhHH-------HHHHHHHHHHHHHHhhhhhHHHH---HHHHHH---H----
Confidence 233444442222233 56655554 22222222211111000000000 000000 0
Q ss_pred ccccccccCCCCccccccccccCchhhhhcccCCCCCchhhHHHhhcccccccccccCcCCCCCCCCccc-c-cccccCC
Q 003070 375 KSCSYASTYPWWPSQSSIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPR-L-DSLKSNE 452 (850)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~~r~~s~~t~e~~~~~~~~~~~~v~~~-~-~~~~~~~ 452 (850)
. ++ ...++..... ++ . .|+++ + +.+++|+
T Consensus 437 -------------~-----------------~~----~~~~~~~~~~-----~~---------~-~v~~~~Ia~vv~~~T 467 (786)
T COG0542 437 -------------K-----------------LK----EGRIPELEKE-----LE---------A-EVDEDDIAEVVARWT 467 (786)
T ss_pred -------------H-----------------Hh----hhhhhhHHHH-----Hh---------h-ccCHHHHHHHHHHHH
Confidence 0 00 0000000000 00 0 02222 2 2467889
Q ss_pred CcceeeecccCCCcCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhhhC-----CCCeEEEEecCCchHHHHHHH
Q 003070 453 GKEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLAL 527 (850)
Q Consensus 453 gi~v~t~l~lg~s~~~~~~~~~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~g-----k~~~~~lf~Gp~gvGKt~lA~ 527 (850)
|||+. ++.+.++++|.+|++.|+++|+||++||.+|+++|+++|+| ||.|||||+||||||||+|||
T Consensus 468 gIPv~--------~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAk 539 (786)
T COG0542 468 GIPVA--------KLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAK 539 (786)
T ss_pred CCChh--------hhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHH
Confidence 99993 56788899999999999999999999999999999999998 789999999999999999999
Q ss_pred HHHHHhcCCCCceEEecCccccC---------CCCCchh-----hHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhcc
Q 003070 528 SIAESVFGSTDLLFHIDMRKRND---------GVSSHSE-----MLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFET 593 (850)
Q Consensus 528 ~LA~~lfgs~~~~i~idms~~~~---------~~~~~~~-----~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~ 593 (850)
+||++|||++++|||||||||++ +|||||| +|||+||+||||||||||||||||+|+|+|||+||+
T Consensus 540 aLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 540 ALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred HHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 99999999999999999999976 6999997 799999999999999999999999999999999999
Q ss_pred Ccc----------CceEEEEecC-CCchhhhhhhhcccccchhheecccCcccccchhhhhhhhccCCCCCccccccccc
Q 003070 594 ENF----------GKVIFVLTKG-DSSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATS 662 (850)
Q Consensus 594 G~l----------~n~Iii~Tsn-~~~~~~e~~~~~~~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~ 662 (850)
|++ +||||||||| |+..+.+... . ..+..+. ..
T Consensus 620 GrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~----~-----------~~~~~~~----------------~~----- 663 (786)
T COG0542 620 GRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDAD----G-----------DDFADKE----------------AL----- 663 (786)
T ss_pred CeeecCCCCEEecceeEEEEecccchHHHHhhcc----c-----------cccchhh----------------hH-----
Confidence 995 6999999999 7654321100 0 0000000 00
Q ss_pred cccccccCCCcccccccCcccccccccccCCcCccCCCCCCCCCCCcccchhhcccCCCCCchhhhcccceEeccCCCCC
Q 003070 663 VTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSN 742 (850)
Q Consensus 663 ~~~~~~~~~~kr~~~~~~s~~~lDLNl~a~e~e~~~~~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~vvF~~l~~~ 742 (850)
... +..+.+++|+||||||||++|+|+||+.
T Consensus 664 ----------------------------------------------~~~--v~~~l~~~F~PEFLNRid~II~F~~L~~- 694 (786)
T COG0542 664 ----------------------------------------------KEA--VMEELKKHFRPEFLNRIDEIIPFNPLSK- 694 (786)
T ss_pred ----------------------------------------------HHH--HHHHHHhhCCHHHHhhcccEEeccCCCH-
Confidence 000 1113358999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHccCCceEEEeCHHHHHHHHhccC--CcchhHHHHHHHHHHhhHHHHHHhCCCC-CCceEE
Q 003070 743 DGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSG--FFHNSLFEKWLKEVFQTSLEAVKIGGKG-GGIEIR 819 (850)
Q Consensus 743 ~~~l~~~i~~~~~~~~~~~l~~~~~~~l~vd~~~~e~l~~~~~--~~~~r~le~wie~vl~~~l~~~~~~g~~-~~~~v~ 819 (850)
+.+.+++.. +...++++|..+ +++|+++++|++||+..++ .+|+|++.|.|++.+.+.|++..+.|+. .+..|+
T Consensus 695 -~~l~~Iv~~-~L~~l~~~L~~~-~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~g~~~~~~~v~ 771 (786)
T COG0542 695 -EVLERIVDL-QLNRLAKRLAER-GITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEILFGKIEDGGTVK 771 (786)
T ss_pred -HHHHHHHHH-HHHHHHHHHHhC-CceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHHHhcccCCCcEEE
Confidence 356555544 556788888654 4999999999999999873 5899999999999999999999999987 445677
Q ss_pred Eee
Q 003070 820 LCF 822 (850)
Q Consensus 820 L~~ 822 (850)
+..
T Consensus 772 v~~ 774 (786)
T COG0542 772 VDV 774 (786)
T ss_pred EEe
Confidence 763
No 3
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=7.9e-76 Score=712.00 Aligned_cols=585 Identities=15% Similarity=0.214 Sum_probs=404.5
Q ss_pred CCcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHH
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLT 148 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rlk 148 (850)
-||+++|+|+++||+|++|+||||||+||||||++|++||++|..|+||..|++.+++++|++.+.++..+|||||+||+
T Consensus 190 iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk 269 (852)
T TIGR03345 190 LGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLK 269 (852)
T ss_pred cCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999987545556999999999
Q ss_pred HHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHH
Q 003070 149 ELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQ 228 (850)
Q Consensus 149 eL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~e 228 (850)
+++++++. .++++||||||+|.|+++|++.| . ++++|+|||++ +||+|.||||||.+
T Consensus 270 ~ii~e~~~---~~~~~ILfIDEih~l~~~g~~~~-------------~-----~d~~n~Lkp~l--~~G~l~~IgaTT~~ 326 (852)
T TIGR03345 270 SVIDEVKA---SPQPIILFIDEAHTLIGAGGQAG-------------Q-----GDAANLLKPAL--ARGELRTIAATTWA 326 (852)
T ss_pred HHHHHHHh---cCCCeEEEEeChHHhccCCCccc-------------c-----ccHHHHhhHHh--hCCCeEEEEecCHH
Confidence 99999975 25789999999999999885321 1 13479999997 89999999999999
Q ss_pred HHHhhhhcCCcccccccceeeecCCCCc--------cccc-----ccccccccccccccCCC-ccccCCCCCCccc-ccc
Q 003070 229 TYMKCQMRQPPLEIQWALQAVSIPSGGL--------GLSL-----HSSSVHESRLTFSQNPS-QVWETKPFAIKEE-EDH 293 (850)
Q Consensus 229 eY~K~iekdPaLEr~W~LQ~V~Vps~~~--------~l~l-----~~~s~~~~~~~~s~~~s-~v~~~~~l~~~~~-~~~ 293 (850)
||++|+++||||+|| ||.|.|++|+. ++.. |+..+.+.++.....+| .++.+++||+++. +-|
T Consensus 327 e~~~~~~~d~AL~rR--f~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlld 404 (852)
T TIGR03345 327 EYKKYFEKDPALTRR--FQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLD 404 (852)
T ss_pred HHhhhhhccHHHHHh--CeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHH
Confidence 999999999999996 58999988873 2221 11111111111111122 3446788888873 222
Q ss_pred hhhcchHhh----------hhHHHHHHHHhccccccC--------CC--CcCcCcccchhhHHHHHHHHHHHHHHhhhhc
Q 003070 294 KLNCCAECT----------SNYEEEAQLFKSGQKKLL--------PP--WLQPHSSSNANQKDELVEMRRKWNRSCHSLH 353 (850)
Q Consensus 294 ~~~~c~~c~----------~~ye~E~~~~~~~~~~~l--------P~--wLq~~~~~~~~~~~~~~~L~kkW~~~c~~lh 353 (850)
. .|..+. ..+++++..+..... .+ +. ..+.......+.++++..+..+|...+....
T Consensus 405 e--a~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (852)
T TIGR03345 405 T--ACARVALSQNATPAALEDLRRRIAALELELD-ALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKELVE 481 (852)
T ss_pred H--HHHHHHHhccCCchhHHHHHHHHHHHHHHHH-HHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 222221 122222222211100 00 00 0000000011224455667778876543211
Q ss_pred cccccccccccccccccccccccccccccCCCCccccccccccCchhhhhcccCCCCCchhhHHHhhcccccccccccCc
Q 003070 354 QGRHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGN 433 (850)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~~r~~s~~t~e~~~~~ 433 (850)
... .. ..... +...++. ...... ...++...+... ..+ +.
T Consensus 482 ~~~-~~-~~~~~-------------~~~~~~~--~~~~~~------------------~~~~~~~~~~~~--~~~---~~ 521 (852)
T TIGR03345 482 AIL-AL-RAELE-------------ADADAPA--DDDAAL------------------RAQLAELEAALA--SAQ---GE 521 (852)
T ss_pred HHH-HH-HHHhh-------------hcccchh--hhhHHH------------------HHHHHHHHHHHH--HHh---hc
Confidence 000 00 00000 0000000 000000 000111000000 000 00
Q ss_pred CCCCCCCCccc-c-cccccCCCcceeeecccCCCcCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhhhC-----
Q 003070 434 CTRKPQGVEPR-L-DSLKSNEGKEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA----- 506 (850)
Q Consensus 434 ~~~~~~~v~~~-~-~~~~~~~gi~v~t~l~lg~s~~~~~~~~~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~g----- 506 (850)
.......|++. + +.++.|+|||+. ++...+.+++.+|++.|+++|+||++||.+|+++|.++|+|
T Consensus 522 ~~~~~~~v~~~~i~~vv~~~tgip~~--------~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~ 593 (852)
T TIGR03345 522 EPLVFPEVDAQAVAEVVADWTGIPVG--------RMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPR 593 (852)
T ss_pred cccccceecHHHHHHHHHHHHCCCch--------hhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCC
Confidence 00001223333 3 346789999993 55677888999999999999999999999999999999987
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC---------CCCCchh-----hHHHHhhhCCCEEEe
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND---------GVSSHSE-----MLMGTLKNYEKLVVL 572 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~---------~~~~~~~-----~l~e~vr~~P~sVvl 572 (850)
||.+||||+||+|||||+||++||+.|||+...|+++||++|.+ +||||+| .|+++|+++||+|||
T Consensus 594 ~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvl 673 (852)
T TIGR03345 594 KPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVL 673 (852)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEE
Confidence 67899999999999999999999999999999999999999843 4789986 699999999999999
Q ss_pred eccccccCHHHHHHHHhhhccCc----------cCceEEEEecC-CCchhhhhhhhcccccchhheecccCcccccchhh
Q 003070 573 VEDIDLADPQFIKILADGFETEN----------FGKVIFVLTKG-DSSNYEERIENQDSVINMTLKVNERNQNFDHKRKA 641 (850)
Q Consensus 573 ldeiekA~~~v~~~l~q~~d~G~----------l~n~Iii~Tsn-~~~~~~e~~~~~~~~~~l~l~~~~~~~~~~~krk~ 641 (850)
|||||||||++++.|+|+||+|+ |+|+||||||| ++..+.+. .. + .++..
T Consensus 674 lDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~------------~~-----~--~~~~~ 734 (852)
T TIGR03345 674 LDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMAL------------CA-----D--PETAP 734 (852)
T ss_pred EechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHh------------cc-----C--cccCc
Confidence 99999999999999999999998 46999999999 65433210 00 0 00000
Q ss_pred hhhhhccCCCCCccccccccccccccccCCCcccccccCcccccccccccCCcCccCCCCCCCCCCCcccchhhcccCCC
Q 003070 642 EWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPA 721 (850)
Q Consensus 642 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~~~~s~~~lDLNl~a~e~e~~~~~~~~~~~~~~sd~~~e~~~~~~ 721 (850)
+. + .. ...+..+....
T Consensus 735 ~~--~---------~~-----------------------------------------------------~~~~~~~~~~~ 750 (852)
T TIGR03345 735 DP--E---------AL-----------------------------------------------------LEALRPELLKV 750 (852)
T ss_pred ch--H---------HH-----------------------------------------------------HHHHHHHHHHh
Confidence 00 0 00 00011223468
Q ss_pred CCchhhhcccceEeccCCCCCchhHHHHHHHHHHHHHHHHHccCCceEEEeCHHHHHHHHhccC--CcchhHHHHHHHHH
Q 003070 722 LSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSG--FFHNSLFEKWLKEV 799 (850)
Q Consensus 722 ~~~efLnriD~~vvF~~l~~~~~~l~~~i~~~~~~~~~~~l~~~~~~~l~vd~~~~e~l~~~~~--~~~~r~le~wie~v 799 (850)
|.|||+||+| +|+|+||+. +++.+++...+ ..+.+++..+.++.|+++++|+++|+..++ .+|+|+++++|+..
T Consensus 751 f~PEflnRi~-iI~F~pLs~--e~l~~Iv~~~L-~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~ 826 (852)
T TIGR03345 751 FKPAFLGRMT-VIPYLPLDD--DVLAAIVRLKL-DRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQT 826 (852)
T ss_pred ccHHHhccee-EEEeCCCCH--HHHHHHHHHHH-HHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHH
Confidence 9999999998 999999999 46766665555 445555643313999999999999999872 47999999999999
Q ss_pred HhhHHHHHHhCCCCCCc
Q 003070 800 FQTSLEAVKIGGKGGGI 816 (850)
Q Consensus 800 l~~~l~~~~~~g~~~~~ 816 (850)
+.++|+...+.|...+.
T Consensus 827 i~~~la~~~l~~~~~~~ 843 (852)
T TIGR03345 827 LLPELSRQILERLAAGE 843 (852)
T ss_pred HHHHHHHHHHhChhcCC
Confidence 99999999999887444
No 4
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=1e-75 Score=712.61 Aligned_cols=552 Identities=17% Similarity=0.237 Sum_probs=393.2
Q ss_pred CCcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHH
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLT 148 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rlk 148 (850)
-||++||++++++|+|++||||||||+||||||++|++||++|.+++||+.|++.+|++||++.+..+..+|||||+||+
T Consensus 182 igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~ 261 (821)
T CHL00095 182 IGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLK 261 (821)
T ss_pred CCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999987544445999999999
Q ss_pred HHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHH
Q 003070 149 ELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQ 228 (850)
Q Consensus 149 eL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~e 228 (850)
.++++++. .+++||||||+|+|+|+|.++| .+ +++|+|||++ +||+|+||||||++
T Consensus 262 ~i~~~~~~----~~~~ILfiDEih~l~~~g~~~g-------------~~-----~~a~lLkp~l--~rg~l~~IgaTt~~ 317 (821)
T CHL00095 262 RIFDEIQE----NNNIILVIDEVHTLIGAGAAEG-------------AI-----DAANILKPAL--ARGELQCIGATTLD 317 (821)
T ss_pred HHHHHHHh----cCCeEEEEecHHHHhcCCCCCC-------------cc-----cHHHHhHHHH--hCCCcEEEEeCCHH
Confidence 99999975 4689999999999999875322 11 3579999997 89999999999999
Q ss_pred HHHhhhhcCCcccccccceeeecCCCCc--------ccc-----cccccccccccccccCCC-ccccCCCCCCcccccch
Q 003070 229 TYMKCQMRQPPLEIQWALQAVSIPSGGL--------GLS-----LHSSSVHESRLTFSQNPS-QVWETKPFAIKEEEDHK 294 (850)
Q Consensus 229 eY~K~iekdPaLEr~W~LQ~V~Vps~~~--------~l~-----l~~~s~~~~~~~~s~~~s-~v~~~~~l~~~~~~~~~ 294 (850)
+|++|+++||+|++| ||+|.|++++. ++. .|...+.+..+.....+| .+..++++|+++.
T Consensus 318 ey~~~ie~D~aL~rR--f~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkai---- 391 (821)
T CHL00095 318 EYRKHIEKDPALERR--FQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAI---- 391 (821)
T ss_pred HHHHHHhcCHHHHhc--ceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHH----
Confidence 999999999999996 58888887762 111 111111111111111122 2235667766652
Q ss_pred hhcchHhhhhHHHHHHHHhccccccCCCCcCcCcccchhhHHHHHHH-------------------HHHHHHHhhhhccc
Q 003070 295 LNCCAECTSNYEEEAQLFKSGQKKLLPPWLQPHSSSNANQKDELVEM-------------------RRKWNRSCHSLHQG 355 (850)
Q Consensus 295 ~~~c~~c~~~ye~E~~~~~~~~~~~lP~wLq~~~~~~~~~~~~~~~L-------------------~kkW~~~c~~lh~~ 355 (850)
...+|+.+....+....|..+... ..++..+ +.+..++...+...
T Consensus 392 ---------dlld~a~a~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (821)
T CHL00095 392 ---------DLLDEAGSRVRLINSRLPPAAREL-------DKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAI 455 (821)
T ss_pred ---------HHHHHHHHHHHhhccCCchhHHHH-------HHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHH
Confidence 122222221110111233222111 1111111 11100000000000
Q ss_pred cccccccccccccccccccccccccccCCCCccccccccccCchhhhhcccCCCCCchhhHHHhhcccccccccccCcCC
Q 003070 356 RHTQSQFSSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCT 435 (850)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~~r~~s~~t~e~~~~~~~ 435 (850)
...+ ..... ..
T Consensus 456 ----------------------------------------------~~~~-------------~~~~~----------~~ 466 (821)
T CHL00095 456 ----------------------------------------------IQSK-------------KTEEE----------KR 466 (821)
T ss_pred ----------------------------------------------HHHH-------------Hhhhc----------cc
Confidence 0000 00000 00
Q ss_pred CCCCCCccc-c-cccccCCCcceeeecccCCCcCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhhhC-----CC
Q 003070 436 RKPQGVEPR-L-DSLKSNEGKEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KK 508 (850)
Q Consensus 436 ~~~~~v~~~-~-~~~~~~~gi~v~t~l~lg~s~~~~~~~~~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~g-----k~ 508 (850)
.....|++. + +.++.|+|||+. ++...+.+++..|++.|+++|+||++||..|+++|.++|+| ||
T Consensus 467 ~~~~~v~~~~i~~~~~~~tgip~~--------~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p 538 (821)
T CHL00095 467 LEVPVVTEEDIAEIVSAWTGIPVN--------KLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRP 538 (821)
T ss_pred ccCCccCHHHHHHHHHHHHCCCch--------hhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCC
Confidence 000112222 2 346788999983 45667888999999999999999999999999999999986 67
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC---------CCCCchh-----hHHHHhhhCCCEEEeec
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND---------GVSSHSE-----MLMGTLKNYEKLVVLVE 574 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~---------~~~~~~~-----~l~e~vr~~P~sVvlld 574 (850)
.+||||+||+|||||+||++||+.+||+...++++||++|.+ +||||+| .|+++++++||+|||||
T Consensus 539 ~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllD 618 (821)
T CHL00095 539 IASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFD 618 (821)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEEC
Confidence 899999999999999999999999999999999999999843 4788886 59999999999999999
Q ss_pred cccccCHHHHHHHHhhhccCc----------cCceEEEEecC-CCchhhhhhhhcccccchhheecccCcccccchhhhh
Q 003070 575 DIDLADPQFIKILADGFETEN----------FGKVIFVLTKG-DSSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEW 643 (850)
Q Consensus 575 eiekA~~~v~~~l~q~~d~G~----------l~n~Iii~Tsn-~~~~~~e~~~~~~~~~~l~l~~~~~~~~~~~krk~~~ 643 (850)
|||||||++++.|+|+||+|+ |+||||||||| |+..+... .... ||.......
T Consensus 619 eieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~----~~~~-----------gf~~~~~~~- 682 (821)
T CHL00095 619 EIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETN----SGGL-----------GFELSENQL- 682 (821)
T ss_pred ChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhh----cccc-----------CCccccccc-
Confidence 999999999999999999998 46999999999 65432200 0000 111000000
Q ss_pred hhhccCCCCCccccccccccccccccCCCcccccccCcccccccccccCCcCccCCCCCCCCCCCcccchhhcccCCCCC
Q 003070 644 EFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALS 723 (850)
Q Consensus 644 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~~~~s~~~lDLNl~a~e~e~~~~~~~~~~~~~~sd~~~e~~~~~~~~ 723 (850)
. +.. + ..+. ..+..+..+.|+
T Consensus 683 --~---------~~~-----------------------------------------~-----~~~~--~~~~~~~~~~f~ 703 (821)
T CHL00095 683 --S---------EKQ-----------------------------------------Y-----KRLS--NLVNEELKQFFR 703 (821)
T ss_pred --c---------ccc-----------------------------------------H-----HHHH--HHHHHHHHHhcC
Confidence 0 000 0 0000 001112346899
Q ss_pred chhhhcccceEeccCCCCCchhHHHHHHHHHHHHHHHHHccCCceEEEeCHHHHHHHHhcc--CCcchhHHHHHHHHHHh
Q 003070 724 NGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGS--GFFHNSLFEKWLKEVFQ 801 (850)
Q Consensus 724 ~efLnriD~~vvF~~l~~~~~~l~~~i~~~~~~~~~~~l~~~~~~~l~vd~~~~e~l~~~~--~~~~~r~le~wie~vl~ 801 (850)
||||||||++|+|+||+. +++.+++.. ..+.+.+++..+ ++.|+++++|+++|+..+ ..+|+|+++++|++.+.
T Consensus 704 peflnRid~ii~F~pL~~--~~l~~Iv~~-~l~~l~~rl~~~-~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~ 779 (821)
T CHL00095 704 PEFLNRLDEIIVFRQLTK--NDVWEIAEI-MLKNLFKRLNEQ-GIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLE 779 (821)
T ss_pred HHHhccCCeEEEeCCCCH--HHHHHHHHH-HHHHHHHHHHHC-CcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Confidence 999999999999999999 366555544 555666667655 499999999999999976 24799999999999999
Q ss_pred hHHHHHHhCCCC-CCceEEEee
Q 003070 802 TSLEAVKIGGKG-GGIEIRLCF 822 (850)
Q Consensus 802 ~~l~~~~~~g~~-~~~~v~L~~ 822 (850)
++|+...+.|+. .+..+++..
T Consensus 780 ~~l~~~~l~~~~~~g~~v~~~~ 801 (821)
T CHL00095 780 DPLAEEVLSFKIKPGDIIIVDV 801 (821)
T ss_pred HHHHHHHHhCccCCCCEEEEEE
Confidence 999999999976 556777763
No 5
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=3.6e-70 Score=664.16 Aligned_cols=595 Identities=16% Similarity=0.241 Sum_probs=405.5
Q ss_pred CCcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHH
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLT 148 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rlk 148 (850)
-||++||+|+++||+||+|+||||+|+||||||++|++||++|..|+||+.|+|.+++.+|++.+..+..+||+||+||+
T Consensus 181 igr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk 260 (857)
T PRK10865 181 IGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLK 260 (857)
T ss_pred CCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999987544446999999999
Q ss_pred HHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHH
Q 003070 149 ELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQ 228 (850)
Q Consensus 149 eL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~e 228 (850)
.+++++.. .++++||||||+|+|+|+|.++| + ++++|+|||++ +||+|.||||||++
T Consensus 261 ~~~~~~~~---~~~~~ILfIDEih~l~~~~~~~~-------------~-----~d~~~~lkp~l--~~g~l~~IgaTt~~ 317 (857)
T PRK10865 261 GVLNDLAK---QEGNVILFIDELHTMVGAGKADG-------------A-----MDAGNMLKPAL--ARGELHCVGATTLD 317 (857)
T ss_pred HHHHHHHH---cCCCeEEEEecHHHhccCCCCcc-------------c-----hhHHHHhcchh--hcCCCeEEEcCCCH
Confidence 99999865 25789999999999999885432 2 23579999997 89999999999999
Q ss_pred HHHhhhhcCCcccccccceeeecCCCCc--------cccc-----ccccccccccccc--cCCCccccCCCCCCccc-cc
Q 003070 229 TYMKCQMRQPPLEIQWALQAVSIPSGGL--------GLSL-----HSSSVHESRLTFS--QNPSQVWETKPFAIKEE-ED 292 (850)
Q Consensus 229 eY~K~iekdPaLEr~W~LQ~V~Vps~~~--------~l~l-----~~~s~~~~~~~~s--~~~s~v~~~~~l~~~~~-~~ 292 (850)
+|++|+++||||+|| ||.|.|+.|+. ++.. |+..+.+..+..+ ....|+ .+++||+++. +-
T Consensus 318 e~r~~~~~d~al~rR--f~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~-~~~~~pdkAi~Li 394 (857)
T PRK10865 318 EYRQYIEKDAALERR--FQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYI-ADRQLPDKAIDLI 394 (857)
T ss_pred HHHHHhhhcHHHHhh--CCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccc-cCCCCChHHHHHH
Confidence 999999999999996 57888887773 2221 1111111111111 111233 6788888873 21
Q ss_pred chh--------hcchHhhhhHHHHHHHHhcccc----ccCCC---CcCcCcccchhhHHHHHHHHHHHHHHhhhhccccc
Q 003070 293 HKL--------NCCAECTSNYEEEAQLFKSGQK----KLLPP---WLQPHSSSNANQKDELVEMRRKWNRSCHSLHQGRH 357 (850)
Q Consensus 293 ~~~--------~~c~~c~~~ye~E~~~~~~~~~----~~lP~---wLq~~~~~~~~~~~~~~~L~kkW~~~c~~lh~~~~ 357 (850)
+.. ...++-..++++.+..+....+ ..-.. .++.......+.+.++..|+.+|......+.....
T Consensus 395 D~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~ 474 (857)
T PRK10865 395 DEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQT 474 (857)
T ss_pred HHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 210 1112222334443333221100 00000 00000000012233455677888766543321100
Q ss_pred c---ccccccccccccccccccccc----cccCCCCccccccccccCchhhhhcccCCCCCchhhHHHhhcccccccccc
Q 003070 358 T---QSQFSSNLYNNQSLTGKSCSY----ASTYPWWPSQSSIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFN 430 (850)
Q Consensus 358 ~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~~r~~s~~t~e~~ 430 (850)
. .......+. + ......+ ...+..+++... .+.... +...
T Consensus 475 ~~~ele~l~~kie--~--a~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~-~~~~------ 521 (857)
T PRK10865 475 IKAELEQAKIAIE--Q--ARRVGDLARMSELQYGKIPELEK----------------------QLAAAT-QLEG------ 521 (857)
T ss_pred HHHHHHHHHHHHH--H--HHhhhhhhhHHHhhhhhhHHHHH----------------------HHHHHH-hhhc------
Confidence 0 000000000 0 0000000 000000000000 000000 0000
Q ss_pred cCcCCCCCCCCccc-c-cccccCCCcceeeecccCCCcCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhhhC--
Q 003070 431 FGNCTRKPQGVEPR-L-DSLKSNEGKEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-- 506 (850)
Q Consensus 431 ~~~~~~~~~~v~~~-~-~~~~~~~gi~v~t~l~lg~s~~~~~~~~~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~g-- 506 (850)
.....-...|++. + +.++.|||||+. ++.+.+.+++..|++.|.++|+||++||..|+.+|.++++|
T Consensus 522 -~~~~~~~~~v~~~~i~~vv~~~tgip~~--------~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~ 592 (857)
T PRK10865 522 -KTMRLLRNKVTDAEIAEVLARWTGIPVS--------RMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLS 592 (857)
T ss_pred -cccccccCccCHHHHHHHHHHHHCCCch--------hhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhccc
Confidence 0000001234433 3 346889999994 45677888999999999999999999999999999999986
Q ss_pred ---CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC---------CCCCchh-----hHHHHhhhCCCE
Q 003070 507 ---KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND---------GVSSHSE-----MLMGTLKNYEKL 569 (850)
Q Consensus 507 ---k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~---------~~~~~~~-----~l~e~vr~~P~s 569 (850)
+|.++|||+||+|+|||++|++||+.+|++...++++||++|.+ .+|||+| .|+++++++||+
T Consensus 593 ~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~ 672 (857)
T PRK10865 593 DPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYS 672 (857)
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCC
Confidence 56799999999999999999999999999999999999999843 4678876 599999999999
Q ss_pred EEeeccccccCHHHHHHHHhhhccCc----------cCceEEEEecC-CCchhhhhhhhcccccchhheecccCcccccc
Q 003070 570 VVLVEDIDLADPQFIKILADGFETEN----------FGKVIFVLTKG-DSSNYEERIENQDSVINMTLKVNERNQNFDHK 638 (850)
Q Consensus 570 VvlldeiekA~~~v~~~l~q~~d~G~----------l~n~Iii~Tsn-~~~~~~e~~~~~~~~~~l~l~~~~~~~~~~~k 638 (850)
|||||||||||+++++.|+|+||+|+ |+|+||||||| ++..+.+. |...
T Consensus 673 vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~--------------------~~~~ 732 (857)
T PRK10865 673 VILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQER--------------------FGEL 732 (857)
T ss_pred eEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHh--------------------cccc
Confidence 99999999999999999999999997 56999999999 65432210 0000
Q ss_pred hhhhhhhhccCCCCCccccccccccccccccCCCcccccccCcccccccccccCCcCccCCCCCCCCCCCcccchhhccc
Q 003070 639 RKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENIT 718 (850)
Q Consensus 639 rk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~~~~s~~~lDLNl~a~e~e~~~~~~~~~~~~~~sd~~~e~~~ 718 (850)
... +.+ ..+....
T Consensus 733 ~~~--------------~~~-----------------------------------------------------~~~~~~~ 745 (857)
T PRK10865 733 DYA--------------HMK-----------------------------------------------------ELVLGVV 745 (857)
T ss_pred chH--------------HHH-----------------------------------------------------HHHHHHH
Confidence 000 000 0000112
Q ss_pred CCCCCchhhhcccceEeccCCCCCchhHHHHHHHHHHHHHHHHHccCCceEEEeCHHHHHHHHhccC--CcchhHHHHHH
Q 003070 719 NPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSG--FFHNSLFEKWL 796 (850)
Q Consensus 719 ~~~~~~efLnriD~~vvF~~l~~~~~~l~~~i~~~~~~~~~~~l~~~~~~~l~vd~~~~e~l~~~~~--~~~~r~le~wi 796 (850)
...|.|||+||+|.+|+|+|++.+ .+.+++...+ ..+.+++... ++.+.++++++++|+..++ .+|+|+++|+|
T Consensus 746 ~~~f~PELlnRld~iivF~PL~~e--dl~~Iv~~~L-~~l~~rl~~~-gi~l~is~~al~~L~~~gy~~~~GARpL~r~I 821 (857)
T PRK10865 746 SHNFRPEFINRIDEVVVFHPLGEQ--HIASIAQIQL-QRLYKRLEER-GYEIHISDEALKLLSENGYDPVYGARPLKRAI 821 (857)
T ss_pred cccccHHHHHhCCeeEecCCCCHH--HHHHHHHHHH-HHHHHHHHhC-CCcCcCCHHHHHHHHHcCCCccCChHHHHHHH
Confidence 368999999999999999999994 5655555544 4455555443 3889999999999998762 37999999999
Q ss_pred HHHHhhHHHHHHhCCCC-CCceEEEee
Q 003070 797 KEVFQTSLEAVKIGGKG-GGIEIRLCF 822 (850)
Q Consensus 797 e~vl~~~l~~~~~~g~~-~~~~v~L~~ 822 (850)
++.+.++|++..+.|+. .+..|++..
T Consensus 822 ~~~i~~~la~~iL~g~~~~~~~~~~~~ 848 (857)
T PRK10865 822 QQQIENPLAQQILSGELVPGKVIRLEV 848 (857)
T ss_pred HHHHHHHHHHHHHcCcCCCCCEEEEEE
Confidence 99999999999999976 455666653
No 6
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=4.9e-69 Score=655.91 Aligned_cols=594 Identities=16% Similarity=0.244 Sum_probs=402.8
Q ss_pred CCcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHH
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLT 148 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rlk 148 (850)
-||++||+++++||+|++|+||||+|+||||||+++++|+++|..|+||..|++.+++.+|++++..+..+||+||+|++
T Consensus 176 igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~ 255 (852)
T TIGR03346 176 IGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLK 255 (852)
T ss_pred CCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999987444456999999999
Q ss_pred HHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHH
Q 003070 149 ELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQ 228 (850)
Q Consensus 149 eL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~e 228 (850)
.+++++.. .++++||||||+|.|+++|.+.| . ++++|+|||++ ++|+|.||||||.+
T Consensus 256 ~~l~~~~~---~~~~~ILfIDEih~l~~~g~~~~-------------~-----~d~~~~Lk~~l--~~g~i~~IgaTt~~ 312 (852)
T TIGR03346 256 AVLNEVTK---SEGQIILFIDELHTLVGAGKAEG-------------A-----MDAGNMLKPAL--ARGELHCIGATTLD 312 (852)
T ss_pred HHHHHHHh---cCCCeEEEeccHHHhhcCCCCcc-------------h-----hHHHHHhchhh--hcCceEEEEeCcHH
Confidence 99999975 25689999999999999875422 2 24579999997 89999999999999
Q ss_pred HHHhhhhcCCcccccccceeeecCCCCc--------ccc----c-ccccccccccccccCCC-ccccCCCCCCccc-ccc
Q 003070 229 TYMKCQMRQPPLEIQWALQAVSIPSGGL--------GLS----L-HSSSVHESRLTFSQNPS-QVWETKPFAIKEE-EDH 293 (850)
Q Consensus 229 eY~K~iekdPaLEr~W~LQ~V~Vps~~~--------~l~----l-~~~s~~~~~~~~s~~~s-~v~~~~~l~~~~~-~~~ 293 (850)
+|++|+++||+|+|| ||+|.|+.|+. ++. . |...+.+..+..+..+| .+..+++||+++. +-|
T Consensus 313 e~r~~~~~d~al~rR--f~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld 390 (852)
T TIGR03346 313 EYRKYIEKDAALERR--FQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLID 390 (852)
T ss_pred HHHHHhhcCHHHHhc--CCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHH
Confidence 999999999999996 58888988873 221 1 11111121211111222 2346788888872 222
Q ss_pred hhhcchHhh----------hhHHHHHHHHhccccccCCCCcCcCc--c------cchhhHHHHHHHHHHHHHHhhhhccc
Q 003070 294 KLNCCAECT----------SNYEEEAQLFKSGQKKLLPPWLQPHS--S------SNANQKDELVEMRRKWNRSCHSLHQG 355 (850)
Q Consensus 294 ~~~~c~~c~----------~~ye~E~~~~~~~~~~~lP~wLq~~~--~------~~~~~~~~~~~L~kkW~~~c~~lh~~ 355 (850)
. .|..+. ...++++..+..... .+...-.... + .....+.++..+...|......+...
T Consensus 391 ~--a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (852)
T TIGR03346 391 E--AAARIRMEIDSKPEELDELDRRIIQLEIERE-ALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGI 467 (852)
T ss_pred H--HHHHHHhhccCCchhHHHHHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 222211 111222211110000 0000000000 0 00012233445666676543221110
Q ss_pred c---ccccccccccccccccccccccccc----cCCCCccccccccccCchhhhhcccCCCCCchhhHHHhhcccccccc
Q 003070 356 R---HTQSQFSSNLYNNQSLTGKSCSYAS----TYPWWPSQSSIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTIE 428 (850)
Q Consensus 356 ~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~~r~~s~~t~e 428 (850)
. ........... . ......|.. .+...+.... .+...... ..+
T Consensus 468 ~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~----~~~ 517 (852)
T TIGR03346 468 QQIKEEIEQVRLELE--Q--AEREGDLAKAAELQYGKLPELEK----------------------RLQAAEAK----LGE 517 (852)
T ss_pred HHHHHHHHHHHHHHH--H--HHhhhhHHHHHHhhhcchHHHHH----------------------HHHHHHHH----hhh
Confidence 0 00000000000 0 000000000 0000000000 00000000 000
Q ss_pred cccCcCCCCCCCCccc-c-cccccCCCcceeeecccCCCcCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhhhC
Q 003070 429 FNFGNCTRKPQGVEPR-L-DSLKSNEGKEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA 506 (850)
Q Consensus 429 ~~~~~~~~~~~~v~~~-~-~~~~~~~gi~v~t~l~lg~s~~~~~~~~~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~g 506 (850)
-. +.. --...|++. + ..++.|+|||+. ++...+.+++..|++.|.++|+||++||..|+++|.++++|
T Consensus 518 ~~-~~~-l~~~~v~~~~i~~v~~~~tgip~~--------~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~g 587 (852)
T TIGR03346 518 ET-KPR-LLREEVTAEEIAEVVSRWTGIPVS--------KMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAG 587 (852)
T ss_pred cc-ccc-cccCCcCHHHHHHHHHHhcCCCcc--------cccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcc
Confidence 00 000 001223333 3 246788999984 45667888999999999999999999999999999999987
Q ss_pred -----CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC---------CCCCchh-----hHHHHhhhCC
Q 003070 507 -----KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND---------GVSSHSE-----MLMGTLKNYE 567 (850)
Q Consensus 507 -----k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~---------~~~~~~~-----~l~e~vr~~P 567 (850)
||.++|||+||+|||||++|++||+.+|++...+++|||++|.+ .||||+| .|+++++++|
T Consensus 588 l~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p 667 (852)
T TIGR03346 588 LSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKP 667 (852)
T ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCC
Confidence 57899999999999999999999999999999999999999843 4778876 6999999999
Q ss_pred CEEEeeccccccCHHHHHHHHhhhccCc----------cCceEEEEecC-CCchhhhhhhhcccccchhheecccCcccc
Q 003070 568 KLVVLVEDIDLADPQFIKILADGFETEN----------FGKVIFVLTKG-DSSNYEERIENQDSVINMTLKVNERNQNFD 636 (850)
Q Consensus 568 ~sVvlldeiekA~~~v~~~l~q~~d~G~----------l~n~Iii~Tsn-~~~~~~e~~~~~~~~~~l~l~~~~~~~~~~ 636 (850)
|+||||||||||||++++.|+|+||+|+ |+|+||||||| |+..+.+. . .+
T Consensus 668 ~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~------------~-----~~-- 728 (852)
T TIGR03346 668 YSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQEL------------A-----GG-- 728 (852)
T ss_pred CcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhh------------c-----cc--
Confidence 9999999999999999999999999998 57999999999 65432110 0 00
Q ss_pred cchhhhhhhhccCCCCCccccccccccccccccCCCcccccccCcccccccccccCCcCccCCCCCCCCCCCcccchhhc
Q 003070 637 HKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTREN 716 (850)
Q Consensus 637 ~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~~~~s~~~lDLNl~a~e~e~~~~~~~~~~~~~~sd~~~e~ 716 (850)
.+. . ..+ ..+..
T Consensus 729 ~~~------~---------~~~-----------------------------------------------------~~~~~ 740 (852)
T TIGR03346 729 DDY------E---------EMR-----------------------------------------------------EAVME 740 (852)
T ss_pred ccH------H---------HHH-----------------------------------------------------HHHHH
Confidence 000 0 000 00001
Q ss_pred ccCCCCCchhhhcccceEeccCCCCCchhHHHHHHHHHHHHHHHHHccCCceEEEeCHHHHHHHHhccC--CcchhHHHH
Q 003070 717 ITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSG--FFHNSLFEK 794 (850)
Q Consensus 717 ~~~~~~~~efLnriD~~vvF~~l~~~~~~l~~~i~~~~~~~~~~~l~~~~~~~l~vd~~~~e~l~~~~~--~~~~r~le~ 794 (850)
.....|+|||+||||.+|+|+|++.+ .+. .|.......+.+.+... ++.++++++++++|+..+. .+|+|++++
T Consensus 741 ~~~~~F~pel~~Rid~IivF~PL~~e--~l~-~I~~l~L~~l~~~l~~~-~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~ 816 (852)
T TIGR03346 741 VLRAHFRPEFLNRIDEIVVFHPLGRE--QIA-RIVEIQLGRLRKRLAER-KITLELSDAALDFLAEAGYDPVYGARPLKR 816 (852)
T ss_pred HHHhhcCHHHhcCcCeEEecCCcCHH--HHH-HHHHHHHHHHHHHHHHC-CCeecCCHHHHHHHHHhCCCCCCCchhHHH
Confidence 12368999999999999999999983 554 44444556677777655 3899999999999998862 389999999
Q ss_pred HHHHHHhhHHHHHHhCCCC-CCceEEEe
Q 003070 795 WLKEVFQTSLEAVKIGGKG-GGIEIRLC 821 (850)
Q Consensus 795 wie~vl~~~l~~~~~~g~~-~~~~v~L~ 821 (850)
+|++.+.++|++..+.|+. .+..+++.
T Consensus 817 ~i~~~i~~~l~~~~l~~~~~~~~~~~~~ 844 (852)
T TIGR03346 817 AIQREIENPLAKKILAGEVADGDTIVVD 844 (852)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 9999999999999999986 45556665
No 7
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=1.6e-68 Score=642.85 Aligned_cols=500 Identities=17% Similarity=0.283 Sum_probs=371.9
Q ss_pred CCcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHH
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLT 148 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rlk 148 (850)
-||+++|++++++|+|++|+||||+|+||+|||++|++||++|..++||..|++.+|+++|++.+..+..++|+||+||+
T Consensus 185 igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~ 264 (731)
T TIGR02639 185 IGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLK 264 (731)
T ss_pred cCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHH
Confidence 39999999999999999999999999999999999999999999999999999999999999988544456999999999
Q ss_pred HHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHH
Q 003070 149 ELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQ 228 (850)
Q Consensus 149 eL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~e 228 (850)
+++++++. .+++||||||||.|+++|...+ | . ++++++|+|++ ++|+|.||||||.+
T Consensus 265 ~i~~~~~~----~~~~ILfiDEih~l~~~g~~~~------~------~-----~~~~~~L~~~l--~~g~i~~IgaTt~~ 321 (731)
T TIGR02639 265 AVVSEIEK----EPNAILFIDEIHTIVGAGATSG------G------S-----MDASNLLKPAL--SSGKLRCIGSTTYE 321 (731)
T ss_pred HHHHHHhc----cCCeEEEEecHHHHhccCCCCC------c------c-----HHHHHHHHHHH--hCCCeEEEEecCHH
Confidence 99999976 4589999999999999874311 1 2 23579999987 79999999999999
Q ss_pred HHHhhhhcCCcccccccceeeecCCCCcccc---cccccccccccccccCCCccccCCCCCCcccccchhhcchHhhhhH
Q 003070 229 TYMKCQMRQPPLEIQWALQAVSIPSGGLGLS---LHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCAECTSNY 305 (850)
Q Consensus 229 eY~K~iekdPaLEr~W~LQ~V~Vps~~~~l~---l~~~s~~~~~~~~s~~~s~v~~~~~l~~~~~~~~~~~~c~~c~~~y 305 (850)
||.+|+++||||.|| ||.|.|++|+..-. +.+ +..+++..+ .+ .+. ++.+..|...+.+|
T Consensus 322 e~~~~~~~d~al~rR--f~~i~v~~p~~~~~~~il~~---~~~~~e~~~---~v----~i~-----~~al~~~~~ls~ry 384 (731)
T TIGR02639 322 EYKNHFEKDRALSRR--FQKIDVGEPSIEETVKILKG---LKEKYEEFH---HV----KYS-----DEALEAAVELSARY 384 (731)
T ss_pred HHHHHhhhhHHHHHh--CceEEeCCCCHHHHHHHHHH---HHHHHHhcc---Cc----ccC-----HHHHHHHHHhhhcc
Confidence 999999999999996 58899988773211 100 000000000 00 010 12223333333333
Q ss_pred HHHHHHHhccccccCCCCcCcCcccchhhHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccCCC
Q 003070 306 EEEAQLFKSGQKKLLPPWLQPHSSSNANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPW 385 (850)
Q Consensus 306 e~E~~~~~~~~~~~lP~wLq~~~~~~~~~~~~~~~L~kkW~~~c~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (850)
.... .+| +...+|- ++.|.+..-.. .
T Consensus 385 i~~r---------~~P--------------~kai~ll---d~a~a~~~~~~-------~--------------------- 410 (731)
T TIGR02639 385 INDR---------FLP--------------DKAIDVI---DEAGASFRLRP-------K--------------------- 410 (731)
T ss_pred cccc---------cCC--------------HHHHHHH---HHhhhhhhcCc-------c---------------------
Confidence 3211 122 1111110 01111110000 0
Q ss_pred CccccccccccCchhhhhcccCCCCCchhhHHHhhcccccccccccCcCCCCCCCCccc-c-cccccCCCcceeeecccC
Q 003070 386 WPSQSSIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPR-L-DSLKSNEGKEVKITLALG 463 (850)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~~r~~s~~t~e~~~~~~~~~~~~v~~~-~-~~~~~~~gi~v~t~l~lg 463 (850)
. .+...|+.. + +.++.++|||+.
T Consensus 411 --~-----------------------------------------------~~~~~v~~~~i~~~i~~~tgiP~~------ 435 (731)
T TIGR02639 411 --A-----------------------------------------------KKKANVSVKDIENVVAKMAHIPVK------ 435 (731)
T ss_pred --c-----------------------------------------------ccccccCHHHHHHHHHHHhCCChh------
Confidence 0 000001111 1 124456788873
Q ss_pred CCcCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhhhC-----CCCeEEEEecCCchHHHHHHHHHHHHhcCCCC
Q 003070 464 NSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGSTD 538 (850)
Q Consensus 464 ~s~~~~~~~~~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~g-----k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~ 538 (850)
.++..+.+++..|++.|.++|+||++|+..|+++|.++|+| ||.++|||+||+|||||+||++||+.++ .
T Consensus 436 --~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~---~ 510 (731)
T TIGR02639 436 --TVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG---V 510 (731)
T ss_pred --hhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc---C
Confidence 34566778999999999999999999999999999999986 6789999999999999999999999994 6
Q ss_pred ceEEecCccccC---------CCCCchh-----hHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCcc--------
Q 003070 539 LLFHIDMRKRND---------GVSSHSE-----MLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENF-------- 596 (850)
Q Consensus 539 ~~i~idms~~~~---------~~~~~~~-----~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l-------- 596 (850)
.|+++||++|.+ +++||+| .|+++++++||+||||||||||||++++.|+|+||+|+|
T Consensus 511 ~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~v 590 (731)
T TIGR02639 511 HLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKA 590 (731)
T ss_pred CeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCccc
Confidence 799999999854 4788886 699999999999999999999999999999999999974
Q ss_pred --CceEEEEecC-CCchhhhhhhhcccccchhheecccCcccccchhhhhhhhccCCCCCccccccccccccccccCCCc
Q 003070 597 --GKVIFVLTKG-DSSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNK 673 (850)
Q Consensus 597 --~n~Iii~Tsn-~~~~~~e~~~~~~~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~k 673 (850)
+|+||||||| |+..+.... + ||.... .+ .
T Consensus 591 d~~~~iii~Tsn~g~~~~~~~~--------~---------~f~~~~-~~--------------~---------------- 622 (731)
T TIGR02639 591 DFRNVILIMTSNAGASEMSKPP--------I---------GFGSEN-VE--------------S---------------- 622 (731)
T ss_pred CCCCCEEEECCCcchhhhhhcc--------C---------Ccchhh-hH--------------H----------------
Confidence 6999999999 653221100 0 111000 00 0
Q ss_pred ccccccCcccccccccccCCcCccCCCCCCCCCCCcccchhhcccCCCCCchhhhcccceEeccCCCCCchhHHHHHHHH
Q 003070 674 KDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAK 753 (850)
Q Consensus 674 r~~~~~~s~~~lDLNl~a~e~e~~~~~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~vvF~~l~~~~~~l~~~i~~~ 753 (850)
....+....|.|||+||||++|+|+||+. +++.+++..
T Consensus 623 ---------------------------------------~~~~~~~~~f~pef~~Rid~Vi~F~pLs~--e~l~~Iv~~- 660 (731)
T TIGR02639 623 ---------------------------------------KSDKAIKKLFSPEFRNRLDAIIHFNPLSE--EVLEKIVQK- 660 (731)
T ss_pred ---------------------------------------HHHHHHHhhcChHHHhcCCeEEEcCCCCH--HHHHHHHHH-
Confidence 00112236899999999999999999999 466555554
Q ss_pred HHHHHHHHHccCCceEEEeCHHHHHHHHhcc--CCcchhHHHHHHHHHHhhHHHHHHhCCCC
Q 003070 754 MKESFDEIFKRQNKVNFSVEERVLEEVLIGS--GFFHNSLFEKWLKEVFQTSLEAVKIGGKG 813 (850)
Q Consensus 754 ~~~~~~~~l~~~~~~~l~vd~~~~e~l~~~~--~~~~~r~le~wie~vl~~~l~~~~~~g~~ 813 (850)
..+.+.+.+... ++.|+++++++++|+..+ ..+|+|+++|||++.+.++|++..+.|+.
T Consensus 661 ~L~~l~~~l~~~-~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~l~~~~ 721 (731)
T TIGR02639 661 FVDELSKQLNEK-NIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEILFGKL 721 (731)
T ss_pred HHHHHHHHHHhC-CCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHHHhCcC
Confidence 445677777655 499999999999999976 34899999999999999999999999875
No 8
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-68 Score=637.38 Aligned_cols=508 Identities=14% Similarity=0.259 Sum_probs=377.0
Q ss_pred CCcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHH
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLT 148 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rlk 148 (850)
-||++++++++++|+|++|+||+|+|+||+|||++|++++++|..++||..|++.++++++++.+.++..++|+||+|++
T Consensus 189 iGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~ 268 (758)
T PRK11034 189 IGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFK 268 (758)
T ss_pred cCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999887544445999999999
Q ss_pred HHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHH
Q 003070 149 ELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQ 228 (850)
Q Consensus 149 eL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~e 228 (850)
.+.+++++ .++.||||||+|.|+++|...+ + . ++++|+|||++ ++|+|.||||||++
T Consensus 269 ~l~~~l~~----~~~~ILfIDEIh~L~g~g~~~~------g------~-----~d~~nlLkp~L--~~g~i~vIgATt~~ 325 (758)
T PRK11034 269 ALLKQLEQ----DTNSILFIDEIHTIIGAGAASG------G------Q-----VDAANLIKPLL--SSGKIRVIGSTTYQ 325 (758)
T ss_pred HHHHHHHh----cCCCEEEeccHHHHhccCCCCC------c------H-----HHHHHHHHHHH--hCCCeEEEecCChH
Confidence 99999986 4578999999999999875311 1 2 35689999997 89999999999999
Q ss_pred HHHhhhhcCCcccccccceeeecCCCCcccc---cccccccccccccccCCCccccCCCCCCcccccchhhcchHhhhhH
Q 003070 229 TYMKCQMRQPPLEIQWALQAVSIPSGGLGLS---LHSSSVHESRLTFSQNPSQVWETKPFAIKEEEDHKLNCCAECTSNY 305 (850)
Q Consensus 229 eY~K~iekdPaLEr~W~LQ~V~Vps~~~~l~---l~~~s~~~~~~~~s~~~s~v~~~~~l~~~~~~~~~~~~c~~c~~~y 305 (850)
+|++++++||+|+||| |.|.|++|+..-. +++ +..+++..+. + .+. +..+..+.+.+.+|
T Consensus 326 E~~~~~~~D~AL~rRF--q~I~v~ePs~~~~~~IL~~---~~~~ye~~h~---v----~i~-----~~al~~a~~ls~ry 388 (758)
T PRK11034 326 EFSNIFEKDRALARRF--QKIDITEPSIEETVQIING---LKPKYEAHHD---V----RYT-----AKAVRAAVELAVKY 388 (758)
T ss_pred HHHHHhhccHHHHhhC--cEEEeCCCCHHHHHHHHHH---HHHHhhhccC---C----CcC-----HHHHHHHHHHhhcc
Confidence 9999999999999975 8999988884211 111 0001110000 0 010 11122333333333
Q ss_pred HHHHHHHhccccccCCCCcCcCcccchhhHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccCCC
Q 003070 306 EEEAQLFKSGQKKLLPPWLQPHSSSNANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYPW 385 (850)
Q Consensus 306 e~E~~~~~~~~~~~lP~wLq~~~~~~~~~~~~~~~L~kkW~~~c~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (850)
.... .+| +...+|- ++.|.+....
T Consensus 389 i~~r---------~lP--------------dKaidll---dea~a~~~~~------------------------------ 412 (758)
T PRK11034 389 INDR---------HLP--------------DKAIDVI---DEAGARARLM------------------------------ 412 (758)
T ss_pred ccCc---------cCh--------------HHHHHHH---HHHHHhhccC------------------------------
Confidence 3211 111 1111110 0111111000
Q ss_pred CccccccccccCchhhhhcccCCCCCchhhHHHhhcccccccccccCcCCCCCCCCc-ccc-cccccCCCcceeeecccC
Q 003070 386 WPSQSSIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVE-PRL-DSLKSNEGKEVKITLALG 463 (850)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~~r~~s~~t~e~~~~~~~~~~~~v~-~~~-~~~~~~~gi~v~t~l~lg 463 (850)
|.... ...|+ .++ +.++.++|||+.
T Consensus 413 -~~~~~----------------------------------------------~~~v~~~~i~~v~~~~tgip~~------ 439 (758)
T PRK11034 413 -PVSKR----------------------------------------------KKTVNVADIESVVARIARIPEK------ 439 (758)
T ss_pred -ccccc----------------------------------------------ccccChhhHHHHHHHHhCCChh------
Confidence 00000 00000 001 124567898884
Q ss_pred CCcCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhhhC-----CCCeEEEEecCCchHHHHHHHHHHHHhcCCCC
Q 003070 464 NSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGSTD 538 (850)
Q Consensus 464 ~s~~~~~~~~~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~g-----k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~ 538 (850)
.+...+.++++.|++.|+++|+||++|+..|+++|.++|+| ||.++|||+||+|+|||+||++||+.+ ..
T Consensus 440 --~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l---~~ 514 (758)
T PRK11034 440 --SVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GI 514 (758)
T ss_pred --hhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh---CC
Confidence 34566778999999999999999999999999999999986 678999999999999999999999998 36
Q ss_pred ceEEecCccccC---------CCCCchh-----hHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCcc--------
Q 003070 539 LLFHIDMRKRND---------GVSSHSE-----MLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENF-------- 596 (850)
Q Consensus 539 ~~i~idms~~~~---------~~~~~~~-----~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l-------- 596 (850)
.|+++||++|.+ .+|||+| .|+++++++||+||||||||||||+|++.|+|+||+|+|
T Consensus 515 ~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~v 594 (758)
T PRK11034 515 ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKA 594 (758)
T ss_pred CcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCcee
Confidence 899999999843 4678885 799999999999999999999999999999999999975
Q ss_pred --CceEEEEecC-CCchhhhhhhhcccccchhheecccCcccccchhhhhhhhccCCCCCccccccccccccccccCCCc
Q 003070 597 --GKVIFVLTKG-DSSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNK 673 (850)
Q Consensus 597 --~n~Iii~Tsn-~~~~~~e~~~~~~~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~k 673 (850)
+|+||||||| |+...... .+ ||.... .
T Consensus 595 d~rn~iiI~TsN~g~~~~~~~------------~~-----g~~~~~-----------------~---------------- 624 (758)
T PRK11034 595 DFRNVVLVMTTNAGVRETERK------------SI-----GLIHQD-----------------N---------------- 624 (758)
T ss_pred cCCCcEEEEeCCcCHHHHhhc------------cc-----Ccccch-----------------h----------------
Confidence 6999999999 54221100 00 110000 0
Q ss_pred ccccccCcccccccccccCCcCccCCCCCCCCCCCcccchhhcccCCCCCchhhhcccceEeccCCCCCchhHHHHHHHH
Q 003070 674 KDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAK 753 (850)
Q Consensus 674 r~~~~~~s~~~lDLNl~a~e~e~~~~~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~vvF~~l~~~~~~l~~~i~~~ 753 (850)
+.+. ..+.+..|.|||+||||++|+|+||+. +++.+++ ..
T Consensus 625 -----------------------------------~~~~--~~~~~~~f~pefl~Rid~ii~f~~L~~--~~l~~I~-~~ 664 (758)
T PRK11034 625 -----------------------------------STDA--MEEIKKIFTPEFRNRLDNIIWFDHLST--DVIHQVV-DK 664 (758)
T ss_pred -----------------------------------hHHH--HHHHHHhcCHHHHccCCEEEEcCCCCH--HHHHHHH-HH
Confidence 0000 112236899999999999999999999 4665544 44
Q ss_pred HHHHHHHHHccCCceEEEeCHHHHHHHHhccC--CcchhHHHHHHHHHHhhHHHHHHhCCCC-CCceEEEe
Q 003070 754 MKESFDEIFKRQNKVNFSVEERVLEEVLIGSG--FFHNSLFEKWLKEVFQTSLEAVKIGGKG-GGIEIRLC 821 (850)
Q Consensus 754 ~~~~~~~~l~~~~~~~l~vd~~~~e~l~~~~~--~~~~r~le~wie~vl~~~l~~~~~~g~~-~~~~v~L~ 821 (850)
....+++++... ++.|+++++++++|+..++ .+|+|+++++|++.+.++|+...+.|+. .+..+++.
T Consensus 665 ~l~~~~~~l~~~-~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~il~~~~~~~~~~~v~ 734 (758)
T PRK11034 665 FIVELQAQLDQK-GVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVA 734 (758)
T ss_pred HHHHHHHHHHHC-CCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHHhCcccCCCEEEEE
Confidence 556678888655 4999999999999998762 3799999999999999999999999876 45566665
No 9
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.94 E-value=1.7e-26 Score=260.17 Aligned_cols=260 Identities=13% Similarity=0.151 Sum_probs=182.8
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHhhhC------C--------CCeEEEEecCCchHHHHHHHHHHHHhcCCCCce
Q 003070 475 RSDLYKVLQENVPWQFDSIHSIVEVLVECKSA------K--------KATWFLLQGNDTIGKRRLALSIAESVFGSTDLL 540 (850)
Q Consensus 475 l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~g------k--------~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~ 540 (850)
.+.|++.|.+.|+||++|+..++.+|...+.+ + ..+.+||.||+|+|||++|++||..+ .-.|
T Consensus 68 p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l---~~pf 144 (413)
T TIGR00382 68 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL---NVPF 144 (413)
T ss_pred HHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc---CCCe
Confidence 56899999999999999999999999544332 1 13789999999999999999999877 3467
Q ss_pred EEecCccccCCCCCchh-----hHHHHhhhCCCE-------EEeeccccccCH--------------HHHHHHHhhhccC
Q 003070 541 FHIDMRKRNDGVSSHSE-----MLMGTLKNYEKL-------VVLVEDIDLADP--------------QFIKILADGFETE 594 (850)
Q Consensus 541 i~idms~~~~~~~~~~~-----~l~e~vr~~P~s-------VvlldeiekA~~--------------~v~~~l~q~~d~G 594 (850)
+.+|++... +++|+| .|+++++..||. |||||||||+++ .||+.|||+|| |
T Consensus 145 ~~~da~~L~--~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLe-G 221 (413)
T TIGR00382 145 AIADATTLT--EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIE-G 221 (413)
T ss_pred EEechhhcc--ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhh-c
Confidence 777776652 356765 478888877775 899999999998 69999999995 7
Q ss_pred cc-------------CceEEEEecCC-C---chhh--hhhhhcccccchhheecccCcccccchhhhhhhhccCCCCCcc
Q 003070 595 NF-------------GKVIFVLTKGD-S---SNYE--ERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRID 655 (850)
Q Consensus 595 ~l-------------~n~Iii~Tsn~-~---~~~~--e~~~~~~~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~ 655 (850)
++ +|+|+|||||- + ..+. +..+.. .++...-||..
T Consensus 222 ~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~--------r~~~~~~gf~~------------------ 275 (413)
T TIGR00382 222 TVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKK--------RTGKSSIGFGA------------------ 275 (413)
T ss_pred cceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHH--------Hhhhccccccc------------------
Confidence 64 49999999992 1 1111 111100 00000001100
Q ss_pred ccccccccccccccCCCcccccccCcccccccccccCCcCccCCCCCCCCCCCcccchhhcccCCCCCchhhhcccceEe
Q 003070 656 EKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFV 735 (850)
Q Consensus 656 ~~~~~~~~~~~~~~~~~kr~~~~~~s~~~lDLNl~a~e~e~~~~~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~vv 735 (850)
+..+. . .+.+.+-+....+...+..|.|||+||||.+|+
T Consensus 276 ------------------------------------~~~~~----~-~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~ 314 (413)
T TIGR00382 276 ------------------------------------EVKKK----S-KEKADLLRQVEPEDLVKFGLIPEFIGRLPVIAT 314 (413)
T ss_pred ------------------------------------ccccc----c-hhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEee
Confidence 00000 0 000000001111222235699999999999999
Q ss_pred ccCCCCCchhHHHHHHHH---HHHHHHHHHccCCceEEEeCHHHHHHHHhcc--CCcchhHHHHHHHHHHhhHHHHHHhC
Q 003070 736 FNRNSSNDGKITGLFLAK---MKESFDEIFKRQNKVNFSVEERVLEEVLIGS--GFFHNSLFEKWLKEVFQTSLEAVKIG 810 (850)
Q Consensus 736 F~~l~~~~~~l~~~i~~~---~~~~~~~~l~~~~~~~l~vd~~~~e~l~~~~--~~~~~r~le~wie~vl~~~l~~~~~~ 810 (850)
|+||+. +.|.+++... +.+.+++.+..+ ++.|+++++|+++|+..+ ..+|+|++++.|++.+.+.+.++-..
T Consensus 315 f~pL~~--~~L~~Il~~~~n~l~kq~~~~l~~~-gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~p~~ 391 (413)
T TIGR00382 315 LEKLDE--EALIAILTKPKNALVKQYQALFKMD-NVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDLPSL 391 (413)
T ss_pred cCCCCH--HHHHHHHHHHHHHHHHHHHHHhccC-CeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhCCCC
Confidence 999999 4676666543 566677778766 499999999999999986 34899999999999999999888654
No 10
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.92 E-value=6e-24 Score=240.52 Aligned_cols=264 Identities=13% Similarity=0.156 Sum_probs=180.7
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHh----hhC--------CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceE
Q 003070 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVEC----KSA--------KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLF 541 (850)
Q Consensus 474 ~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~----r~g--------k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i 541 (850)
..+.+.+.|.+.|+||++|+..++.+|... +.+ .+...+||.||+|+|||.+|++||..+ ...|+
T Consensus 61 ~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l---~~pf~ 137 (412)
T PRK05342 61 TPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL---DVPFA 137 (412)
T ss_pred CHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh---CCCce
Confidence 367899999999999999999999988532 222 135789999999999999999999887 46899
Q ss_pred EecCccccCCCCCchhh-----HHHH-------hhhCCCEEEeeccccccCHH--------------HHHHHHhhhccCc
Q 003070 542 HIDMRKRNDGVSSHSEM-----LMGT-------LKNYEKLVVLVEDIDLADPQ--------------FIKILADGFETEN 595 (850)
Q Consensus 542 ~idms~~~~~~~~~~~~-----l~e~-------vr~~P~sVvlldeiekA~~~--------------v~~~l~q~~d~G~ 595 (850)
++|++.+.+ ++|+|. |+.. +.+.++.||||||||++++. ||+.||++||.+.
T Consensus 138 ~id~~~l~~--~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~ 215 (412)
T PRK05342 138 IADATTLTE--AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTV 215 (412)
T ss_pred ecchhhccc--CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCe
Confidence 999998743 467652 3333 34557899999999999864 9999999998332
Q ss_pred ------------cCceEEEEecCCC----chhh--hhhhhcccccchhheecccCcccccchhhhhhhhccCCCCCcccc
Q 003070 596 ------------FGKVIFVLTKGDS----SNYE--ERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEK 657 (850)
Q Consensus 596 ------------l~n~Iii~Tsn~~----~~~~--e~~~~~~~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~ 657 (850)
+.++|+|+|+|-. ..|. +..+.+ .+....-||...
T Consensus 216 ~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~--------r~~~~~~gf~~~------------------- 268 (412)
T PRK05342 216 ASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQ--------RLGKKGIGFGAE------------------- 268 (412)
T ss_pred EEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHH--------HHhhcccCCccc-------------------
Confidence 2389999999921 1111 110000 000000011000
Q ss_pred ccccccccccccCCCcccccccCcccccccccccCCcCccCCCCCCCCCCCcccchhhcccCCCCCchhhhcccceEecc
Q 003070 658 EDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFN 737 (850)
Q Consensus 658 ~~~~~~~~~~~~~~~kr~~~~~~s~~~lDLNl~a~e~e~~~~~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~vvF~ 737 (850)
+.+..+ . .....+...+..+...+..|.|||+||||.+|+|+
T Consensus 269 -----------------------------------~~~~~~--~-~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~ 310 (412)
T PRK05342 269 -----------------------------------VKSKKE--K-RTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLE 310 (412)
T ss_pred -----------------------------------cccccc--c-chhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecC
Confidence 000000 0 00000000011111122458999999999999999
Q ss_pred CCCCCchhHHHHHHH---HHHHHHHHHHccCCceEEEeCHHHHHHHHhccC--CcchhHHHHHHHHHHhhHHHHHHhC
Q 003070 738 RNSSNDGKITGLFLA---KMKESFDEIFKRQNKVNFSVEERVLEEVLIGSG--FFHNSLFEKWLKEVFQTSLEAVKIG 810 (850)
Q Consensus 738 ~l~~~~~~l~~~i~~---~~~~~~~~~l~~~~~~~l~vd~~~~e~l~~~~~--~~~~r~le~wie~vl~~~l~~~~~~ 810 (850)
||+. +.|.+++.. .+.+.+++.+... ++.|+++++|+++|+..+. .+|+|+|++.|++.+.+.+.++-..
T Consensus 311 ~L~~--~~L~~Il~~~~~~l~~q~~~~l~~~-~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p~~ 385 (412)
T PRK05342 311 ELDE--EALVRILTEPKNALVKQYQKLFEMD-GVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELPSR 385 (412)
T ss_pred CCCH--HHHHHHHHHHHHHHHHHHHHHHHhC-CcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhcccc
Confidence 9999 466665542 5666777888766 4999999999999999762 4799999999999999999887754
No 11
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.88 E-value=1.8e-23 Score=210.66 Aligned_cols=102 Identities=33% Similarity=0.504 Sum_probs=82.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhc-CCCCceEEecCccccC--CCCCchhhHHH----HhhhCCCEEEeecccccc
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVF-GSTDLLFHIDMRKRND--GVSSHSEMLMG----TLKNYEKLVVLVEDIDLA 579 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lf-gs~~~~i~idms~~~~--~~~~~~~~l~e----~vr~~P~sVvlldeiekA 579 (850)
||.++|||+||+|||||+||++||+.+| |+...|+++||++|.. .....+..+.. .+...++.||||||||||
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 6889999999999999999999999999 9999999999999844 01111121111 123333449999999999
Q ss_pred CH-----------HHHHHHHhhhccCcc----------CceEEEEecC-CC
Q 003070 580 DP-----------QFIKILADGFETENF----------GKVIFVLTKG-DS 608 (850)
Q Consensus 580 ~~-----------~v~~~l~q~~d~G~l----------~n~Iii~Tsn-~~ 608 (850)
|+ .||+.|||+||+|++ +|+||||||| +.
T Consensus 81 ~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 81 HPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp SHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 99 999999999999996 4999999999 44
No 12
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.67 E-value=1.6e-15 Score=185.12 Aligned_cols=220 Identities=15% Similarity=0.139 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHhhh-CC-CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcccc
Q 003070 472 KLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKS-AK-KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRN 549 (850)
Q Consensus 472 ~~~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~-gk-~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~ 549 (850)
..+++.+.+.|.+.++||+++...|.+.+...+. +. ....++|.||+|+|||.+|++||+.+ ...+++++++...
T Consensus 308 ~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l---~~~~~~i~~~~~~ 384 (775)
T TIGR00763 308 NLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL---NRKFVRFSLGGVR 384 (775)
T ss_pred hhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh---cCCeEEEeCCCcc
Confidence 5679999999999999999999999986654432 22 23479999999999999999999998 4678888765421
Q ss_pred ------CCCCCchh--------hHHHHhhhCCCEEEeeccccccCHH----HHHHHHhhhcc---Ccc-----------C
Q 003070 550 ------DGVSSHSE--------MLMGTLKNYEKLVVLVEDIDLADPQ----FIKILADGFET---ENF-----------G 597 (850)
Q Consensus 550 ------~~~~~~~~--------~l~e~vr~~P~sVvlldeiekA~~~----v~~~l~q~~d~---G~l-----------~ 597 (850)
....+|++ .+..+.+.+| |||||||||+++. ..+.|+++||. +.| +
T Consensus 385 ~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~--villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s 462 (775)
T TIGR00763 385 DEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP--LFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLS 462 (775)
T ss_pred cHHHHcCCCCceeCCCCchHHHHHHHhCcCCC--EEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccC
Confidence 11123432 3444444555 9999999999764 45889999985 332 3
Q ss_pred ceEEEEecCCCchhhhhhhhcccccchhheecccCcccccchhhhhhhhccCCCCCccccccccccccccccCCCccccc
Q 003070 598 KVIFVLTKGDSSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFS 677 (850)
Q Consensus 598 n~Iii~Tsn~~~~~~e~~~~~~~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~ 677 (850)
++|||+|+|..
T Consensus 463 ~v~~I~TtN~~--------------------------------------------------------------------- 473 (775)
T TIGR00763 463 KVIFIATANSI--------------------------------------------------------------------- 473 (775)
T ss_pred CEEEEEecCCc---------------------------------------------------------------------
Confidence 67777777531
Q ss_pred ccCcccccccccccCCcCccCCCCCCCCCCCcccchhhcccCCCCCchhhhcccceEeccCCCCCchhHHHHHHHHHHHH
Q 003070 678 RQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKES 757 (850)
Q Consensus 678 ~~~s~~~lDLNl~a~e~e~~~~~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~vvF~~l~~~~~~l~~~i~~~~~~~ 757 (850)
..++|.|++|++ +|.|.+++.+ +..+++...+...
T Consensus 474 ------------------------------------------~~i~~~L~~R~~-vi~~~~~~~~--e~~~I~~~~l~~~ 508 (775)
T TIGR00763 474 ------------------------------------------DTIPRPLLDRME-VIELSGYTEE--EKLEIAKKYLIPK 508 (775)
T ss_pred ------------------------------------------hhCCHHHhCCee-EEecCCCCHH--HHHHHHHHHHHHH
Confidence 123567899995 8999999973 5555554444332
Q ss_pred HHHHHccCCceEEEeCHHHHHHHHhcc-CCcchhHHHHHHHHHHhhHHHHHHhCC
Q 003070 758 FDEIFKRQNKVNFSVEERVLEEVLIGS-GFFHNSLFEKWLKEVFQTSLEAVKIGG 811 (850)
Q Consensus 758 ~~~~l~~~~~~~l~vd~~~~e~l~~~~-~~~~~r~le~wie~vl~~~l~~~~~~g 811 (850)
..+..|-. ...+.++++++++|+... .-.|.|.++|.|++++.....++...|
T Consensus 509 ~~~~~~l~-~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~~~~~~~~~ 562 (775)
T TIGR00763 509 ALEDHGLK-PDELKITDEALLLLIKYYTREAGVRNLERQIEKICRKAAVKLVEQG 562 (775)
T ss_pred HHHHcCCC-cceEEECHHHHHHHHHhcChhcCChHHHHHHHHHHHHHHHHHHhcc
Confidence 22222211 135899999999998853 236999999999999988866655433
No 13
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.59 E-value=3.6e-14 Score=172.53 Aligned_cols=223 Identities=13% Similarity=0.152 Sum_probs=165.1
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHh-hhCC-CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccc-
Q 003070 472 KLQRSDLYKVLQENVPWQFDSIHSIVEVLVEC-KSAK-KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR- 548 (850)
Q Consensus 472 ~~~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~-r~gk-~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~- 548 (850)
..+++.-.+.|.+...|++++-..|.+.+... +.++ +.--++|.||+|+|||.+|+.+|+.+ ...+++++++..
T Consensus 310 ~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l---~~~~~~i~~~~~~ 386 (784)
T PRK10787 310 KKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT---GRKYVRMALGGVR 386 (784)
T ss_pred cccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEcCCCC
Confidence 35788999999999999999999998876633 3232 22348899999999999999999987 356888887653
Q ss_pred cC-----CCCCch----hhHHHHhhhC--CCEEEeeccccccCHHH----HHHHHhhhccCc--------------cCce
Q 003070 549 ND-----GVSSHS----EMLMGTLKNY--EKLVVLVEDIDLADPQF----IKILADGFETEN--------------FGKV 599 (850)
Q Consensus 549 ~~-----~~~~~~----~~l~e~vr~~--P~sVvlldeiekA~~~v----~~~l~q~~d~G~--------------l~n~ 599 (850)
+. ...+|+ |.+..++++- ...|||||||||+.++. +..|++++|.+. +++.
T Consensus 387 d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 387 DEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred CHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 11 012233 3455554431 22399999999999887 499999999874 2466
Q ss_pred EEEEecCCCchhhhhhhhcccccchhheecccCcccccchhhhhhhhccCCCCCccccccccccccccccCCCccccccc
Q 003070 600 IFVLTKGDSSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQ 679 (850)
Q Consensus 600 Iii~Tsn~~~~~~e~~~~~~~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~~~ 679 (850)
|||+|+|..
T Consensus 467 ~~i~TaN~~----------------------------------------------------------------------- 475 (784)
T PRK10787 467 MFVATSNSM----------------------------------------------------------------------- 475 (784)
T ss_pred EEEEcCCCC-----------------------------------------------------------------------
Confidence 777766421
Q ss_pred CcccccccccccCCcCccCCCCCCCCCCCcccchhhcccCCCCCchhhhcccceEeccCCCCCchhHHHHHHHHHHHHHH
Q 003070 680 SSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFD 759 (850)
Q Consensus 680 ~s~~~lDLNl~a~e~e~~~~~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~vvF~~l~~~~~~l~~~i~~~~~~~~~ 759 (850)
..+|.||+|++ +|.|.+++. .++.+++...+..+..
T Consensus 476 -----------------------------------------~i~~aLl~R~~-ii~~~~~t~--eek~~Ia~~~L~~k~~ 511 (784)
T PRK10787 476 -----------------------------------------NIPAPLLDRME-VIRLSGYTE--DEKLNIAKRHLLPKQI 511 (784)
T ss_pred -----------------------------------------CCCHHHhccee-eeecCCCCH--HHHHHHHHHhhhHHHH
Confidence 13567899994 999999998 4777777776653343
Q ss_pred HHHccCCceEEEeCHHHHHHHHhcc-CCcchhHHHHHHHHHHhhHHHHHHhCCCC
Q 003070 760 EIFKRQNKVNFSVEERVLEEVLIGS-GFFHNSLFEKWLKEVFQTSLEAVKIGGKG 813 (850)
Q Consensus 760 ~~l~~~~~~~l~vd~~~~e~l~~~~-~~~~~r~le~wie~vl~~~l~~~~~~g~~ 813 (850)
+..|..+ ..|.++++++++|+..+ .-+|+|+++|.|++.+...+++...+++.
T Consensus 512 ~~~~l~~-~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~ 565 (784)
T PRK10787 512 ERNALKK-GELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSL 565 (784)
T ss_pred HHhCCCC-CeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4445442 68999999999999743 24799999999999999999988777654
No 14
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.47 E-value=7.7e-12 Score=152.32 Aligned_cols=152 Identities=13% Similarity=0.138 Sum_probs=103.5
Q ss_pred CCcHHHHHHHHHHHhc-------------CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccc
Q 003070 69 SVSKEDIKLVFEVFLR-------------KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTL 135 (850)
Q Consensus 69 ~gRdeeirrVieIL~R-------------r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~ 135 (850)
.|.++.+.++-+.+.- ...++.+|.|+||+|||.+++.++... +..++.++-+.+
T Consensus 181 ~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~----------~~~~i~i~~~~i-- 248 (733)
T TIGR01243 181 GGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA----------GAYFISINGPEI-- 248 (733)
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEEecHHH--
Confidence 3788887777776532 234678999999999999999988754 345777765432
Q ss_pred cccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCC
Q 003070 136 RFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSAS 215 (850)
Q Consensus 136 ~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~a 215 (850)
.....|+.++++.++.+.... ..+.||||||++.+.+...... + +.-..++..+-+++.... .
T Consensus 249 ~~~~~g~~~~~l~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~------~-----~~~~~~~~~Ll~~ld~l~--~ 311 (733)
T TIGR01243 249 MSKYYGESEERLREIFKEAEE----NAPSIIFIDEIDAIAPKREEVT------G-----EVEKRVVAQLLTLMDGLK--G 311 (733)
T ss_pred hcccccHHHHHHHHHHHHHHh----cCCcEEEeehhhhhcccccCCc------c-----hHHHHHHHHHHHHhhccc--c
Confidence 234468889999999988775 4568999999999987642110 0 112345666667775432 4
Q ss_pred CCeEEEEecccHHHHHhhhhcCCcccc--cccceeeecCCCC
Q 003070 216 STRVWLMATASYQTYMKCQMRQPPLEI--QWALQAVSIPSGG 255 (850)
Q Consensus 216 rG~lwlIGatT~eeY~K~iekdPaLEr--~W~LQ~V~Vps~~ 255 (850)
++.+-+||||+.-++ -||+|-| ||+ ..+.++-|+
T Consensus 312 ~~~vivI~atn~~~~-----ld~al~r~gRfd-~~i~i~~P~ 347 (733)
T TIGR01243 312 RGRVIVIGATNRPDA-----LDPALRRPGRFD-REIVIRVPD 347 (733)
T ss_pred CCCEEEEeecCChhh-----cCHHHhCchhcc-EEEEeCCcC
Confidence 688999999876543 3788877 443 345555444
No 15
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.41 E-value=4.6e-12 Score=142.67 Aligned_cols=83 Identities=5% Similarity=0.095 Sum_probs=66.1
Q ss_pred CCchhhhcccceEeccCCCCCchhHHHHHH---HHHHHHHHHHHccCCceEEEeCHHHHHHHHhccC-------CcchhH
Q 003070 722 LSNGFLDLIQNRFVFNRNSSNDGKITGLFL---AKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSG-------FFHNSL 791 (850)
Q Consensus 722 ~~~efLnriD~~vvF~~l~~~~~~l~~~i~---~~~~~~~~~~l~~~~~~~l~vd~~~~e~l~~~~~-------~~~~r~ 791 (850)
+-|||.-|+=-+|.++||+.+ ++.+++. ..+.+.+.+.|.-. ++.|+++++|+++|+..+. ..|+|.
T Consensus 318 lIPEl~GR~Pi~v~L~~L~~~--dL~~ILteP~nsLikQy~~Lf~~e-gv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~ 394 (443)
T PRK05201 318 LIPELQGRFPIRVELDALTEE--DFVRILTEPKASLIKQYQALLATE-GVTLEFTDDAIRRIAEIAYQVNEKTENIGARR 394 (443)
T ss_pred ccHHHhCccceEEECCCCCHH--HHHHHhcCChhHHHHHHHHHHhhc-CcEEEEcHHHHHHHHHHHHHhcccccccchhh
Confidence 479999999999999999984 5655552 34667788888766 3999999999999998862 358999
Q ss_pred HHHHHHHHHhhHHHHH
Q 003070 792 FEKWLKEVFQTSLEAV 807 (850)
Q Consensus 792 le~wie~vl~~~l~~~ 807 (850)
|..-+|++|....-++
T Consensus 395 LrtI~E~~L~d~~Fe~ 410 (443)
T PRK05201 395 LHTVMEKLLEDISFEA 410 (443)
T ss_pred HHHHHHHHHHHHhccC
Confidence 9999988887765443
No 16
>CHL00181 cbbX CbbX; Provisional
Probab=99.33 E-value=3.6e-11 Score=131.10 Aligned_cols=218 Identities=12% Similarity=0.120 Sum_probs=146.3
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHH---Hh--h--hCC----CCeEEEEecCCchHHHHHHHHHHHHhcCC----C
Q 003070 473 LQRSDLYKVLQENVPWQFDSIHSIVEVLV---EC--K--SAK----KATWFLLQGNDTIGKRRLALSIAESVFGS----T 537 (850)
Q Consensus 473 ~~l~~L~~~L~~~V~gQ~eai~~Ia~av~---~~--r--~gk----~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs----~ 537 (850)
..++.+.+.|.+.++|++++-..|-+.+. .. | .|. +.--++|.||+|+|||.+|++||+.++.. .
T Consensus 12 ~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~ 91 (287)
T CHL00181 12 TQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKK 91 (287)
T ss_pred cCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 35788999999999999877665554432 22 2 232 22238999999999999999999998742 3
Q ss_pred CceEEecCccccCCCCCchh----hHHHHhhhCCCEEEeecccccc---------CHHHHHHHHhhhccCccCceEEEEe
Q 003070 538 DLLFHIDMRKRNDGVSSHSE----MLMGTLKNYEKLVVLVEDIDLA---------DPQFIKILADGFETENFGKVIFVLT 604 (850)
Q Consensus 538 ~~~i~idms~~~~~~~~~~~----~l~e~vr~~P~sVvlldeiekA---------~~~v~~~l~q~~d~G~l~n~Iii~T 604 (850)
..++.++.+.... .|+| ...+.+.+-...||||||++.- ..++++.|++.|++++ .+.+||++
T Consensus 92 ~~~~~v~~~~l~~---~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~-~~~~vI~a 167 (287)
T CHL00181 92 GHLLTVTRDDLVG---QYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR-DDLVVIFA 167 (287)
T ss_pred CceEEecHHHHHH---HHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC-CCEEEEEe
Confidence 3477777554211 1222 2344555556689999999862 5789999999999876 57888886
Q ss_pred cCCCchhhhhhhhcccccchhheecccCcccccchhhhhhhhccCCCCCccccccccccccccccCCCcccccccCcccc
Q 003070 605 KGDSSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNT 684 (850)
Q Consensus 605 sn~~~~~~e~~~~~~~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~~~~s~~~ 684 (850)
++... . + ..
T Consensus 168 g~~~~-~----------------------------------~---------~~--------------------------- 176 (287)
T CHL00181 168 GYKDR-M----------------------------------D---------KF--------------------------- 176 (287)
T ss_pred CCcHH-H----------------------------------H---------HH---------------------------
Confidence 53210 0 0 00
Q ss_pred cccccccCCcCccCCCCCCCCCCCcccchhhcccCCCCCchhhhcccceEeccCCCCCchhHHHHHHHHHHHHHHHHHcc
Q 003070 685 LDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKR 764 (850)
Q Consensus 685 lDLNl~a~e~e~~~~~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~vvF~~l~~~~~~l~~~i~~~~~~~~~~~l~~ 764 (850)
-...|.|.+|++.+|.|.|++. +++.+++...+ +...
T Consensus 177 -----------------------------------~~~np~L~sR~~~~i~F~~~t~--~el~~I~~~~l-~~~~----- 213 (287)
T CHL00181 177 -----------------------------------YESNPGLSSRIANHVDFPDYTP--EELLQIAKIML-EEQQ----- 213 (287)
T ss_pred -----------------------------------HhcCHHHHHhCCceEEcCCcCH--HHHHHHHHHHH-HHhc-----
Confidence 0123889999999999999998 46655544433 2221
Q ss_pred CCceEEEeCHHHH----HHHHhcc--CCcc-hhHHHHHHHHHHhhHHHHHHhCCCC
Q 003070 765 QNKVNFSVEERVL----EEVLIGS--GFFH-NSLFEKWLKEVFQTSLEAVKIGGKG 813 (850)
Q Consensus 765 ~~~~~l~vd~~~~----e~l~~~~--~~~~-~r~le~wie~vl~~~l~~~~~~g~~ 813 (850)
..+++++. +++.... .+|| +|.+.+|+++.....-.++-..+..
T Consensus 214 -----~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~~~~ 264 (287)
T CHL00181 214 -----YQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFESGGR 264 (287)
T ss_pred -----CCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 33445544 4443332 3678 7999999999999998888777644
No 17
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.29 E-value=4.4e-11 Score=134.79 Aligned_cols=83 Identities=7% Similarity=0.117 Sum_probs=66.9
Q ss_pred CCchhhhcccceEeccCCCCCchhHHHHHH---HHHHHHHHHHHccCCceEEEeCHHHHHHHHhccC-------CcchhH
Q 003070 722 LSNGFLDLIQNRFVFNRNSSNDGKITGLFL---AKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSG-------FFHNSL 791 (850)
Q Consensus 722 ~~~efLnriD~~vvF~~l~~~~~~l~~~i~---~~~~~~~~~~l~~~~~~~l~vd~~~~e~l~~~~~-------~~~~r~ 791 (850)
+-|||.-|+=-+|.++||+.+ ++.+++. ..+.+.+++.|... ++.|+++++|+++|+..+. .-|+|.
T Consensus 316 lIPEl~GR~Pi~v~L~~L~~e--dL~rILteP~nsLikQy~~Lf~~e-gv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~ 392 (441)
T TIGR00390 316 LIPELQGRFPIRVELQALTTD--DFERILTEPKNSLIKQYKALMKTE-GVNIEFSDEAIKRIAELAYNVNEKTENIGARR 392 (441)
T ss_pred ccHHHhCccceEEECCCCCHH--HHHHHhcCChhHHHHHHHHHHhhc-CcEEEEeHHHHHHHHHHHHHhcccccccchhh
Confidence 579999999999999999984 6766552 34667788888876 4999999999999998862 258999
Q ss_pred HHHHHHHHHhhHHHHH
Q 003070 792 FEKWLKEVFQTSLEAV 807 (850)
Q Consensus 792 le~wie~vl~~~l~~~ 807 (850)
|..-+|++|....-++
T Consensus 393 LrtilE~~l~d~~fe~ 408 (441)
T TIGR00390 393 LHTVLERLLEDISFEA 408 (441)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9998888887665443
No 18
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.5e-10 Score=122.96 Aligned_cols=260 Identities=14% Similarity=0.178 Sum_probs=165.6
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHH----HhhhC--CC-----CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEe
Q 003070 475 RSDLYKVLQENVPWQFDSIHSIVEVLV----ECKSA--KK-----ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHI 543 (850)
Q Consensus 475 l~~L~~~L~~~V~gQ~eai~~Ia~av~----~~r~g--k~-----~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~i 543 (850)
.+.+.+.|.+-|+||++|=..++=||- +-+.. +. -.-.|+.||||+|||-||+.||+.| .-.|---
T Consensus 52 P~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L---nVPFaiA 128 (408)
T COG1219 52 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL---NVPFAIA 128 (408)
T ss_pred hHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh---CCCeeec
Confidence 468899999999999999887776654 33322 11 2568999999999999999999999 3344333
Q ss_pred cCccccCCCCCchh-----hHHHH-------hhhCCCEEEeeccccccC--------------HHHHHHHHhhhccCcc-
Q 003070 544 DMRKRNDGVSSHSE-----MLMGT-------LKNYEKLVVLVEDIDLAD--------------PQFIKILADGFETENF- 596 (850)
Q Consensus 544 dms~~~~~~~~~~~-----~l~e~-------vr~~P~sVvlldeiekA~--------------~~v~~~l~q~~d~G~l- 596 (850)
|-...- ..|||| .|..- |.+-.+-+|.+|||||-. .-||..||.+||--.-
T Consensus 129 DATtLT--EAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvas 206 (408)
T COG1219 129 DATTLT--EAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVAS 206 (408)
T ss_pred cccchh--hccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceec
Confidence 433322 257987 22222 444556699999999832 3489999999874321
Q ss_pred -----------CceEEEEecC------C-CchhhhhhhhcccccchhheecccCcccccchhhhhhhhccCCCCCccccc
Q 003070 597 -----------GKVIFVLTKG------D-SSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKE 658 (850)
Q Consensus 597 -----------~n~Iii~Tsn------~-~~~~~e~~~~~~~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~ 658 (850)
...|-|=|+| | +..++ ..+.+ +++.+.-||...-+.
T Consensus 207 VPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~Gle-kiI~~--------R~~~~~iGF~a~~~~----------------- 260 (408)
T COG1219 207 VPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLE-KIIKK--------RLGKKGIGFGAEVKS----------------- 260 (408)
T ss_pred cCCCCCCCCCccceEEEcccceeEEeccccccHH-HHHHH--------hccCCcccccccccc-----------------
Confidence 1455555555 2 22232 11100 011111122110000
Q ss_pred cccccccccccCCCcccccccCcccccccccccCCcCccCCCCCCCCCCCcccchhhcccCCCCCchhhhcccceEeccC
Q 003070 659 DATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNR 738 (850)
Q Consensus 659 ~~~~~~~~~~~~~~kr~~~~~~s~~~lDLNl~a~e~e~~~~~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~vvF~~ 738 (850)
...++. .+ .+-..+..|...+...-|||+.|+=-+....+
T Consensus 261 -----------~~~~~~----~~-------------------------~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~ 300 (408)
T COG1219 261 -----------KSKKKE----EG-------------------------ELLKQVEPEDLVKFGLIPEFIGRLPVIATLEE 300 (408)
T ss_pred -----------hhhhhh----HH-------------------------HHHHhcChHHHHHcCCcHHHhcccceeeehhh
Confidence 000000 00 00000111112236789999999999999999
Q ss_pred CCCCchhHHHHH---HHHHHHHHHHHHccCCceEEEeCHHHHHHHHhcc--CCcchhHHHHHHHHHHhhHHHHHH
Q 003070 739 NSSNDGKITGLF---LAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGS--GFFHNSLFEKWLKEVFQTSLEAVK 808 (850)
Q Consensus 739 l~~~~~~l~~~i---~~~~~~~~~~~l~~~~~~~l~vd~~~~e~l~~~~--~~~~~r~le~wie~vl~~~l~~~~ 808 (850)
||. ++|.+++ ..-+.+.+++.|+-++ +.|+++++|+..|+..+ -..|+|.+..-+|+.+...+-++-
T Consensus 301 Lde--~aLv~ILtePkNAlvKQYq~Lf~~d~-V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~MfelP 372 (408)
T COG1219 301 LDE--DALVQILTEPKNALVKQYQKLFEMDG-VELEFTEEALKAIAKKAIERKTGARGLRSIIEELLLDVMFELP 372 (408)
T ss_pred cCH--HHHHHHHhcccHHHHHHHHHHhcccC-ceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhCC
Confidence 998 4777766 3456678888898774 99999999999998876 246999999999999988776554
No 19
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.22 E-value=1.1e-10 Score=124.97 Aligned_cols=137 Identities=20% Similarity=0.234 Sum_probs=105.4
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHhhhC----CCCeEEEEecCCchHHHHHHHHHHHHhcCCC--CceEEecCcc
Q 003070 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA----KKATWFLLQGNDTIGKRRLALSIAESVFGST--DLLFHIDMRK 547 (850)
Q Consensus 474 ~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~g----k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~--~~~i~idms~ 547 (850)
++..|++.|..++.||.-|...|..+|+-.... || -.+-|.|++|+||..+|+-||+.+|-+. ..+|+.=...
T Consensus 72 ~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~~p~KP-LvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat 150 (344)
T KOG2170|consen 72 DLDGLEKDLARALFGQHLAKQLVVNALKSHWANPNPRKP-LVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVAT 150 (344)
T ss_pred cchHHHHHHHHHhhchHHHHHHHHHHHHHHhcCCCCCCC-eEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhh
Confidence 478899999999999999999999999988775 44 4788999999999999999999998542 2222111111
Q ss_pred ccCCCCCchh--------hHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhc-----cCc-cCceEEEEecC-CCchh
Q 003070 548 RNDGVSSHSE--------MLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFE-----TEN-FGKVIFVLTKG-DSSNY 611 (850)
Q Consensus 548 ~~~~~~~~~~--------~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d-----~G~-l~n~Iii~Tsn-~~~~~ 611 (850)
.+--.+.|++ ++.+.++.-+.|+++|||+||-|+.+.+.|.--+| +|. |++||||+-|| |...+
T Consensus 151 ~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI 229 (344)
T KOG2170|consen 151 LHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEI 229 (344)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcchHH
Confidence 1112233443 57777788899999999999999999998888777 333 78999999999 55443
No 20
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=3.2e-10 Score=125.97 Aligned_cols=268 Identities=16% Similarity=0.169 Sum_probs=164.1
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHh-h------------------hCC--------------------------C-
Q 003070 475 RSDLYKVLQENVPWQFDSIHSIVEVLVEC-K------------------SAK--------------------------K- 508 (850)
Q Consensus 475 l~~L~~~L~~~V~gQ~eai~~Ia~av~~~-r------------------~gk--------------------------~- 508 (850)
.|.+|+.|.+-|+||+.|=.-++=||-.. | +++ +
T Consensus 136 PkeI~~~Ldk~VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~~~l 215 (564)
T KOG0745|consen 136 PKEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIAKAL 215 (564)
T ss_pred hHHHHHHhhhheechhhhhheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchhcccc
Confidence 57899999999999999876665554321 0 000 0
Q ss_pred ----------CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchh---------hHHHH---hhhC
Q 003070 509 ----------ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSE---------MLMGT---LKNY 566 (850)
Q Consensus 509 ----------~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~---------~l~e~---vr~~ 566 (850)
-.-+|++||||+|||-||+.||+.| .-.|.-.|+...- -.|||| +|++| |-+-
T Consensus 216 d~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~l---dVPfaIcDcTtLT--QAGYVGeDVEsvi~KLl~~A~~nVekA 290 (564)
T KOG0745|consen 216 DEDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVL---DVPFAICDCTTLT--QAGYVGEDVESVIQKLLQEAEYNVEKA 290 (564)
T ss_pred cccccceeeecccEEEECCCCCchhHHHHHHHHHh---CCCeEEecccchh--hcccccccHHHHHHHHHHHccCCHHHH
Confidence 0448999999999999999999999 4566666877532 247887 45555 4455
Q ss_pred CCEEEeeccccccC--------------HHHHHHHHhhhccCcc------------CceEEEEecC------CC-chhhh
Q 003070 567 EKLVVLVEDIDLAD--------------PQFIKILADGFETENF------------GKVIFVLTKG------DS-SNYEE 613 (850)
Q Consensus 567 P~sVvlldeiekA~--------------~~v~~~l~q~~d~G~l------------~n~Iii~Tsn------~~-~~~~e 613 (850)
-.-+|+||||||-- .-||..||..+|--.. ..+|-|=|+| |+ ..+ +
T Consensus 291 QqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~L-d 369 (564)
T KOG0745|consen 291 QQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGL-D 369 (564)
T ss_pred hcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccch-H
Confidence 55699999999832 3488899998863321 1566666666 22 111 1
Q ss_pred hhhhc---ccccchhheecccCcccccchhhhhhhhccCCCCCccccccccccccccccCCCcccccccCcccccccccc
Q 003070 614 RIENQ---DSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMK 690 (850)
Q Consensus 614 ~~~~~---~~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~~~~s~~~lDLNl~ 690 (850)
..+.+ .+. ++-..|+..+.| ++.+. +++ . ...+.+|.. .|+..-
T Consensus 370 k~I~rR~~d~s------lGFg~~s~~~vr-~~~~~----~s~----~----------~~~~~~~~~-------lL~~~~- 416 (564)
T KOG0745|consen 370 KIISRRLDDKS------LGFGAPSSKGVR-ANMAT----KSG----V----------ENDAEKRDE-------LLEKVE- 416 (564)
T ss_pred HHHHHhhcchh------cccCCCCCccch-hhccc----ccC----c----------chhHHHHHH-------HHhhcc-
Confidence 11110 000 000001000111 11100 000 0 001111100 011100
Q ss_pred cCCcCccCCCCCCCCCCCcccchhhcccCCCCCchhhhcccceEeccCCCCCchhHHHHH---HHHHHHHHHHHHccCCc
Q 003070 691 ADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLF---LAKMKESFDEIFKRQNK 767 (850)
Q Consensus 691 a~e~e~~~~~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~vvF~~l~~~~~~l~~~i---~~~~~~~~~~~l~~~~~ 767 (850)
+.|+.. ...-|||..|+=-+|.|.+|+. +.|.+.+ ..-+.+...+.|+..|
T Consensus 417 ------------------~~DLis-----fGmIPEfVGRfPVlVplh~L~~--~~Lv~VLtEPknaL~~Qyk~lf~~~n- 470 (564)
T KOG0745|consen 417 ------------------SGDLIS-----FGMIPEFVGRFPVLVPLHSLDE--DQLVRVLTEPKNALGKQYKKLFGMDN- 470 (564)
T ss_pred ------------------ccchhh-----hcCcHHHhcccceEeeccccCH--HHHHHHHhcchhhHHHHHHHHhccCC-
Confidence 112211 5678999999999999999998 4665555 3345667777888775
Q ss_pred eEEEeCHHHHHHHHhcc--CCcchhHHHHHHHHHHhhHHHHH
Q 003070 768 VNFSVEERVLEEVLIGS--GFFHNSLFEKWLKEVFQTSLEAV 807 (850)
Q Consensus 768 ~~l~vd~~~~e~l~~~~--~~~~~r~le~wie~vl~~~l~~~ 807 (850)
+.|.++++|++.|+..+ -.-|+|.|..-+|..|..+.-++
T Consensus 471 V~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfev 512 (564)
T KOG0745|consen 471 VELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEV 512 (564)
T ss_pred eeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccC
Confidence 99999999999998876 34699999999999887665443
No 21
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.18 E-value=7.2e-10 Score=120.71 Aligned_cols=214 Identities=13% Similarity=0.083 Sum_probs=144.7
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHh-------hhCC----CCeEEEEecCCchHHHHHHHHHHHHhcCC----CC
Q 003070 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVEC-------KSAK----KATWFLLQGNDTIGKRRLALSIAESVFGS----TD 538 (850)
Q Consensus 474 ~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~-------r~gk----~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs----~~ 538 (850)
.++.+.+.|.+.++|++++-.+|.+.+... +.|. +..-++|.||+|+|||.+|+++|+.++.. ..
T Consensus 12 ~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~ 91 (284)
T TIGR02880 12 GITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKG 91 (284)
T ss_pred cHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccc
Confidence 367778888888899988877776644322 2242 22358999999999999999999998742 23
Q ss_pred ceEEecCccccCCCCCchh----hHHHHhhhCCCEEEeecccccc---------CHHHHHHHHhhhccCccCceEEEEec
Q 003070 539 LLFHIDMRKRNDGVSSHSE----MLMGTLKNYEKLVVLVEDIDLA---------DPQFIKILADGFETENFGKVIFVLTK 605 (850)
Q Consensus 539 ~~i~idms~~~~~~~~~~~----~l~e~vr~~P~sVvlldeiekA---------~~~v~~~l~q~~d~G~l~n~Iii~Ts 605 (850)
.++.++.++.-. .|+| .+.+.+.+--..|+|||||+.- ...+++.|++.|++++ .+.+||+++
T Consensus 92 ~~v~v~~~~l~~---~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~-~~~~vI~a~ 167 (284)
T TIGR02880 92 HLVSVTRDDLVG---QYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR-DDLVVILAG 167 (284)
T ss_pred eEEEecHHHHhH---hhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC-CCEEEEEeC
Confidence 588887643211 1222 2334444434479999999853 4678999999999886 477888866
Q ss_pred CCCchhhhhhhhcccccchhheecccCcccccchhhhhhhhccCCCCCccccccccccccccccCCCcccccccCccccc
Q 003070 606 GDSSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTL 685 (850)
Q Consensus 606 n~~~~~~e~~~~~~~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~~~~s~~~l 685 (850)
+... . + ..
T Consensus 168 ~~~~-~----------------------------------~---------~~---------------------------- 175 (284)
T TIGR02880 168 YKDR-M----------------------------------D---------SF---------------------------- 175 (284)
T ss_pred CcHH-H----------------------------------H---------HH----------------------------
Confidence 4210 0 0 00
Q ss_pred ccccccCCcCccCCCCCCCCCCCcccchhhcccCCCCCchhhhcccceEeccCCCCCchhHHHHHHHHHHHHHHHHHccC
Q 003070 686 DLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQ 765 (850)
Q Consensus 686 DLNl~a~e~e~~~~~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~vvF~~l~~~~~~l~~~i~~~~~~~~~~~l~~~ 765 (850)
....|.|.+|++..|.|.|++. +++..++...+.+ +
T Consensus 176 ----------------------------------~~~np~L~sR~~~~i~fp~l~~--edl~~I~~~~l~~-~------- 211 (284)
T TIGR02880 176 ----------------------------------FESNPGFSSRVAHHVDFPDYSE--AELLVIAGLMLKE-Q------- 211 (284)
T ss_pred ----------------------------------HhhCHHHHhhCCcEEEeCCcCH--HHHHHHHHHHHHH-h-------
Confidence 0124789999999999999997 4665555443322 1
Q ss_pred CceEEEeCHHHHHHHHhc----c--CCcc-hhHHHHHHHHHHhhHHHHHHhC
Q 003070 766 NKVNFSVEERVLEEVLIG----S--GFFH-NSLFEKWLKEVFQTSLEAVKIG 810 (850)
Q Consensus 766 ~~~~l~vd~~~~e~l~~~----~--~~~~-~r~le~wie~vl~~~l~~~~~~ 810 (850)
...+++++++.+... . .|+| .|.++.+++......-.++...
T Consensus 212 ---~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r~~~~ 260 (284)
T TIGR02880 212 ---QYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQANRLFCD 260 (284)
T ss_pred ---ccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 135677888777554 1 4787 8899999998887777776654
No 22
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.10 E-value=3e-09 Score=114.19 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=77.7
Q ss_pred CCCchHHHHHHH---HHHHHh----hhCC----CCeEEEEecCCchHHHHHHHHHHHHhcC----CCCceEEecCccccC
Q 003070 486 VPWQFDSIHSIV---EVLVEC----KSAK----KATWFLLQGNDTIGKRRLALSIAESVFG----STDLLFHIDMRKRND 550 (850)
Q Consensus 486 V~gQ~eai~~Ia---~av~~~----r~gk----~~~~~lf~Gp~gvGKt~lA~~LA~~lfg----s~~~~i~idms~~~~ 550 (850)
++|++++-.+|- ..+..+ +.|. ....++|.||+|+|||.+|+.+|+.++. +...++.++.+....
T Consensus 8 ~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~ 87 (261)
T TIGR02881 8 MVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVG 87 (261)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhh
Confidence 677766554444 333322 2342 2366899999999999999999998763 334667776654321
Q ss_pred CCCCc-hhhHHHHhhhCCCEEEeeccccccC--------HHHHHHHHhhhccCccCceEEEEec
Q 003070 551 GVSSH-SEMLMGTLKNYEKLVVLVEDIDLAD--------PQFIKILADGFETENFGKVIFVLTK 605 (850)
Q Consensus 551 ~~~~~-~~~l~e~vr~~P~sVvlldeiekA~--------~~v~~~l~q~~d~G~l~n~Iii~Ts 605 (850)
...|. ...+.+.+.+....|||||||+.-. .+.++.|++.||+++ .+.+||+++
T Consensus 88 ~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-~~~~vila~ 150 (261)
T TIGR02881 88 EYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR-NEFVLILAG 150 (261)
T ss_pred hhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC-CCEEEEecC
Confidence 11111 1245566766667899999998632 567888999999874 355666654
No 23
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07 E-value=3.3e-09 Score=126.52 Aligned_cols=115 Identities=15% Similarity=0.208 Sum_probs=83.7
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC---------------------ceEE
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD---------------------LLFH 542 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~---------------------~~i~ 542 (850)
+.|+||++++..+.++|. .|+.---+||.||.|+|||.+|+.||+.|+.... .++.
T Consensus 16 dEVIGQe~Vv~~L~~aL~---~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviE 92 (830)
T PRK07003 16 ASLVGQEHVVRALTHALD---GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVE 92 (830)
T ss_pred HHHcCcHHHHHHHHHHHh---cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEE
Confidence 357899999999988876 3443445679999999999999999999874211 2333
Q ss_pred ecCccccCCCCCchhh---HHHHhhh----CCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 543 IDMRKRNDGVSSHSEM---LMGTLKN----YEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 543 idms~~~~~~~~~~~~---l~e~vr~----~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
||-+. ...++. |.+.+.. ..|.|++|||+|+-+...+|.|+..||+- -.+++|||+||.
T Consensus 93 IDAas-----~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEP-P~~v~FILaTtd 158 (830)
T PRK07003 93 MDAAS-----NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEP-PPHVKFILATTD 158 (830)
T ss_pred ecccc-----cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhc-CCCeEEEEEECC
Confidence 33221 112333 3333333 45789999999999999999999999984 348999999985
No 24
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=2.9e-09 Score=122.58 Aligned_cols=115 Identities=18% Similarity=0.250 Sum_probs=83.9
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC---------------------ceEE
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD---------------------LLFH 542 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~---------------------~~i~ 542 (850)
+.|+||++++..+..++.. ++-.-.+||.||.|+|||.+|+.||+.+..... .++.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~---~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviE 94 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKS---GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLE 94 (484)
T ss_pred HHHhChHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCcccee
Confidence 3479999999988888764 333346889999999999999999999975321 1222
Q ss_pred ecCccccCCCCCchh---hHHHHhh----hCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 543 IDMRKRNDGVSSHSE---MLMGTLK----NYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 543 idms~~~~~~~~~~~---~l~e~vr----~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
||-.. ..| ++ .|.+.+. ...|.|++|||++.-....++.|+..||+- -.++||||+++.
T Consensus 95 Idaas----~~g-Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEP-p~~viFILaTte 160 (484)
T PRK14956 95 IDAAS----NRG-IENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEP-PAHIVFILATTE 160 (484)
T ss_pred echhh----ccc-HHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcC-CCceEEEeecCC
Confidence 22211 111 22 3444444 345789999999999999999999999883 348999998874
No 25
>PLN03025 replication factor C subunit; Provisional
Probab=99.04 E-value=3.4e-09 Score=117.09 Aligned_cols=113 Identities=13% Similarity=0.227 Sum_probs=80.9
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCC--CceEEecCccccCCCCCchhhHHHH
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGST--DLLFHIDMRKRNDGVSSHSEMLMGT 562 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~--~~~i~idms~~~~~~~~~~~~l~e~ 562 (850)
.|+||++++..+...+. .+ ...++||.||+|+|||.+|+++|..+||.. ..++.++.+.. ..++.+-+.
T Consensus 14 ~~~g~~~~~~~L~~~~~---~~-~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~-----~~~~~vr~~ 84 (319)
T PLN03025 14 DIVGNEDAVSRLQVIAR---DG-NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD-----RGIDVVRNK 84 (319)
T ss_pred HhcCcHHHHHHHHHHHh---cC-CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc-----ccHHHHHHH
Confidence 35799998888766544 22 234789999999999999999999999863 33454444321 112333222
Q ss_pred hh----------hCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 563 LK----------NYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 563 vr----------~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
++ ...+.||+|||+|......++.|++.||.- =.++.||+++|.
T Consensus 85 i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~-~~~t~~il~~n~ 138 (319)
T PLN03025 85 IKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIY-SNTTRFALACNT 138 (319)
T ss_pred HHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcc-cCCceEEEEeCC
Confidence 21 235789999999999999999999999851 136789998874
No 26
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=4.1e-09 Score=124.38 Aligned_cols=115 Identities=15% Similarity=0.215 Sum_probs=84.8
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCC----C---------------------
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGST----D--------------------- 538 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~----~--------------------- 538 (850)
+.|+||++++..+.+++... |----+||.||.|+|||.+|+.||+.|+... .
T Consensus 16 ddVIGQe~vv~~L~~al~~g---RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQ---RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhC---CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCC
Confidence 35799999999999998754 3334567999999999999999999998631 1
Q ss_pred -ceEEecCccccCCCCCchh---hHHHHhhhC----CCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 539 -LLFHIDMRKRNDGVSSHSE---MLMGTLKNY----EKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 539 -~~i~idms~~~~~~~~~~~---~l~e~vr~~----P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.++.||-+ ....++ .|.+.+... .|.|++|||+|+-....+|.||..||+- -.+++|||+||.
T Consensus 93 pDviEIdAa-----s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP-P~~v~FILaTte 163 (700)
T PRK12323 93 VDYIEMDAA-----SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP-PEHVKFILATTD 163 (700)
T ss_pred CcceEeccc-----ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC-CCCceEEEEeCC
Confidence 12222221 112344 344444444 4789999999999999999999999983 248899999984
No 27
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=6.2e-09 Score=123.10 Aligned_cols=115 Identities=19% Similarity=0.250 Sum_probs=85.1
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCC---------------------CceEE
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGST---------------------DLLFH 542 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~---------------------~~~i~ 542 (850)
..|+||+.++..+..++. .|+.---+||.||.|+|||.+|+.||+.+.... ..++.
T Consensus 15 ddVIGQe~vv~~L~~aI~---~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 15 NELVGQNHVSRALSSALE---RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred HHhcCcHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEE
Confidence 357999999999999887 444446778999999999999999999986421 12344
Q ss_pred ecCccccCCCCCchhh---HHHHhhh----CCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 543 IDMRKRNDGVSSHSEM---LMGTLKN----YEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 543 idms~~~~~~~~~~~~---l~e~vr~----~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
+|.+.. .-++. +.+.++. ..|.|++|||++.-+...++.|+..||+-. .+++|||+++.
T Consensus 92 IDAAs~-----~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP-~~v~FILaTtd 157 (702)
T PRK14960 92 IDAASR-----TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPP-EHVKFLFATTD 157 (702)
T ss_pred eccccc-----CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCC-CCcEEEEEECC
Confidence 443221 12443 3333333 357899999999999999999999999843 47889998864
No 28
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.96 E-value=1.2e-08 Score=119.84 Aligned_cols=114 Identities=23% Similarity=0.304 Sum_probs=83.5
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCC---------------------CceEEe
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGST---------------------DLLFHI 543 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~---------------------~~~i~i 543 (850)
.|+||+.++..+..++.. |+..-.+||.||.|+|||.+|+.||+.++... ..++.+
T Consensus 17 diiGq~~~v~~L~~~i~~---~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 17 EVAGQQHALNSLVHALET---QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred HhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 578999999998888763 44445678999999999999999999987521 123333
Q ss_pred cCccccCCCCCchh---hHHHHhhhC----CCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 544 DMRKRNDGVSSHSE---MLMGTLKNY----EKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 544 dms~~~~~~~~~~~---~l~e~vr~~----P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
|... ..| ++ .+.+.+... .|.||+|||+++.....++.|+..||+.- .+++|||+++.
T Consensus 94 daas----~~g-vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp-~~v~fIL~Ttd 158 (546)
T PRK14957 94 DAAS----RTG-VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPP-EYVKFILATTD 158 (546)
T ss_pred eccc----ccC-HHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCC-CCceEEEEECC
Confidence 3211 111 22 344555544 47899999999999999999999999853 47888887753
No 29
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.96 E-value=1.3e-08 Score=119.23 Aligned_cols=114 Identities=18% Similarity=0.258 Sum_probs=84.5
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC---------------------ceEEe
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD---------------------LLFHI 543 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~---------------------~~i~i 543 (850)
.|+||++++..+..++... +---.+||.||.|+|||.+|+.||+.++.... .++.+
T Consensus 17 divGq~~v~~~L~~~~~~~---~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQ---YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred HhcCCHHHHHHHHHHHHhC---CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 4799999999999998653 33456789999999999999999999976421 13333
Q ss_pred cCccccCCCCCchhh---HHHHhh----hCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 544 DMRKRNDGVSSHSEM---LMGTLK----NYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 544 dms~~~~~~~~~~~~---l~e~vr----~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
|-+. ...++. +.+.+. +.+|.|++|||+++-++..+|.|+..||+- -.+++|||+++.
T Consensus 94 daas-----~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep-p~~~~fIlattd 158 (509)
T PRK14958 94 DAAS-----RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP-PSHVKFILATTD 158 (509)
T ss_pred cccc-----cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc-CCCeEEEEEECC
Confidence 3221 123443 333333 345789999999999999999999999984 247999998864
No 30
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=1.8e-08 Score=113.42 Aligned_cols=115 Identities=19% Similarity=0.258 Sum_probs=83.3
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC---------------------ceEE
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD---------------------LLFH 542 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~---------------------~~i~ 542 (850)
+.|+||++++..+..++.. |+.--.+||.||.|+|||.+|+++|+.++.... .++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~---~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~ 92 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSL---GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIE 92 (363)
T ss_pred hhccChHHHHHHHHHHHHc---CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEE
Confidence 3578999999999888864 433345789999999999999999999975321 1222
Q ss_pred ecCccccCCCCCchh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 543 IDMRKRNDGVSSHSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 543 idms~~~~~~~~~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
+|.+. ...++ .+.+.+...| |.||+|||+++.....++.|+..+|+-. .+++||++++.
T Consensus 93 ~~~~~-----~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~-~~~~fIl~t~~ 158 (363)
T PRK14961 93 IDAAS-----RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPP-QHIKFILATTD 158 (363)
T ss_pred ecccc-----cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCC-CCeEEEEEcCC
Confidence 22211 12233 4555555555 6799999999999999999999999842 37788888753
No 31
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=1.4e-08 Score=120.35 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=84.4
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCC---------------------CceEEe
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGST---------------------DLLFHI 543 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~---------------------~~~i~i 543 (850)
.|+||+.++..+.+++.. ++-.-.+||.||.|+|||.+|+.||+.++... ..++.|
T Consensus 17 dIiGQe~v~~~L~~ai~~---~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eI 93 (624)
T PRK14959 17 EVAGQETVKAILSRAAQE---NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEI 93 (624)
T ss_pred HhcCCHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEE
Confidence 467999999988888864 44335788999999999999999999998531 123344
Q ss_pred cCccccCCCCCchh---hHHHHhhhC----CCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 544 DMRKRNDGVSSHSE---MLMGTLKNY----EKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 544 dms~~~~~~~~~~~---~l~e~vr~~----P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
|-+. ...++ .|.+.+... .|.||+|||+++.+...++.|++.||+ .-.+++||+++|.
T Consensus 94 d~a~-----~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE-P~~~~ifILaTt~ 158 (624)
T PRK14959 94 DGAS-----NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE-PPARVTFVLATTE 158 (624)
T ss_pred eccc-----ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc-cCCCEEEEEecCC
Confidence 3221 11133 455555544 478999999999999999999999998 2357899998863
No 32
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.94 E-value=3.2e-08 Score=109.78 Aligned_cols=105 Identities=18% Similarity=0.130 Sum_probs=75.6
Q ss_pred cCCCchHHHHHHHHHHHHhhh-CCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHh
Q 003070 485 NVPWQFDSIHSIVEVLVECKS-AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTL 563 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~-gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~v 563 (850)
.++||++.+..+...+..++. +.+..-++|.||+|+|||.+|+++|..+- ..+..+.....+ ..+.+..+...+
T Consensus 26 ~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~---~~~~~~~~~~~~--~~~~l~~~l~~l 100 (328)
T PRK00080 26 EFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG---VNIRITSGPALE--KPGDLAAILTNL 100 (328)
T ss_pred HhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC---CCeEEEeccccc--ChHHHHHHHHhc
Confidence 469999999999988877654 45556789999999999999999999883 223333322211 111122222222
Q ss_pred hhCCCEEEeeccccccCHHHHHHHHhhhccCcc
Q 003070 564 KNYEKLVVLVEDIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 564 r~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l 596 (850)
.+..||+||||+......+..|+.+|++.++
T Consensus 101 --~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~ 131 (328)
T PRK00080 101 --EEGDVLFIDEIHRLSPVVEEILYPAMEDFRL 131 (328)
T ss_pred --ccCCEEEEecHhhcchHHHHHHHHHHHhcce
Confidence 3578999999999999999999999998754
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.94 E-value=2.5e-08 Score=108.83 Aligned_cols=111 Identities=21% Similarity=0.162 Sum_probs=77.7
Q ss_pred ccCCCchHHHHHHHHHHHHhhhC-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHH
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSA-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGT 562 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~ 562 (850)
+.++||++.+..+...+...+.. .+...++|.||.|+|||.+|+++|..+- ..+..++..... ..+.+.+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~---~~~~~~~~~~~~-----~~~~l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG---VNLKITSGPALE-----KPGDLAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC---CCEEEeccchhc-----CchhHHHH
Confidence 35799999999988888655443 3345789999999999999999998873 123333322111 12233333
Q ss_pred hhh-CCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEec
Q 003070 563 LKN-YEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTK 605 (850)
Q Consensus 563 vr~-~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Ts 605 (850)
++. ....|+|+|||++..+..+..|+.+|++.+.. +|+++
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~---~v~~~ 116 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLD---IVIGK 116 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhhee---eeecc
Confidence 322 34569999999999999999999999988753 44544
No 34
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2.8e-08 Score=115.87 Aligned_cols=134 Identities=16% Similarity=0.149 Sum_probs=96.1
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeEE
Q 003070 87 RRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAII 166 (850)
Q Consensus 87 K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvIL 166 (850)
-++++|.|.||.|||-+++.+|+.- +++++.+.-+.|. ...-||-|..|.....+.... ..+.|+
T Consensus 218 prg~Ll~gppg~Gkt~l~~aVa~e~----------~a~~~~i~~peli--~k~~gEte~~LR~~f~~a~k~---~~psii 282 (693)
T KOG0730|consen 218 PRGLLLYGPPGTGKTFLVRAVANEY----------GAFLFLINGPELI--SKFPGETESNLRKAFAEALKF---QVPSII 282 (693)
T ss_pred CCCccccCCCCCChHHHHHHHHHHh----------CceeEecccHHHH--HhcccchHHHHHHHHHHHhcc---CCCeeE
Confidence 4689999999999999999888762 3667776655331 233678888888888887763 338999
Q ss_pred EecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccc-ccc
Q 003070 167 YTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEI-QWA 245 (850)
Q Consensus 167 fIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr-~W~ 245 (850)
|||||+.|++-...- .+.-+.+|+.+-.|+..+. +++++-+|+||.- --.-||+|-| ||+
T Consensus 283 ~IdEld~l~p~r~~~------------~~~e~Rv~sqlltL~dg~~--~~~~vivl~atnr-----p~sld~alRRgRfd 343 (693)
T KOG0730|consen 283 FIDELDALCPKREGA------------DDVESRVVSQLLTLLDGLK--PDAKVIVLAATNR-----PDSLDPALRRGRFD 343 (693)
T ss_pred eHHhHhhhCCccccc------------chHHHHHHHHHHHHHhhCc--CcCcEEEEEecCC-----ccccChhhhcCCCc
Confidence 999999998854210 1135677788888887654 6789999998742 2356888887 765
Q ss_pred ceeeecCCCC
Q 003070 246 LQAVSIPSGG 255 (850)
Q Consensus 246 LQ~V~Vps~~ 255 (850)
+-|.|--|+
T Consensus 344 -~ev~IgiP~ 352 (693)
T KOG0730|consen 344 -REVEIGIPG 352 (693)
T ss_pred -ceeeecCCC
Confidence 666665444
No 35
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=4.2e-08 Score=113.10 Aligned_cols=137 Identities=12% Similarity=0.162 Sum_probs=87.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeEE
Q 003070 87 RRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAII 166 (850)
Q Consensus 87 K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvIL 166 (850)
-|-.+|=|+||.|||.++..+|.-. ++-|+++.-..+ -.+.-||-|+||.+|.+...+ ..+.|+
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel----------~vPf~~isApei--vSGvSGESEkkiRelF~~A~~----~aPciv 286 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGEL----------GVPFLSISAPEI--VSGVSGESEKKIRELFDQAKS----NAPCIV 286 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhc----------CCceEeecchhh--hcccCcccHHHHHHHHHHHhc----cCCeEE
Confidence 3567888999999999988876431 234666553322 344569999999999999987 468999
Q ss_pred EecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhccccc-CCC-CCeEEEEecccHHHHHhhhhcCCcccccc
Q 003070 167 YTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCN-SAS-STRVWLMATASYQTYMKCQMRQPPLEIQW 244 (850)
Q Consensus 167 fIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l-~~a-rG~lwlIGatT~eeY~K~iekdPaLEr~W 244 (850)
|||||..|.+..... +-+--+.+|+.+=+.+-... +.. .-.+-+||||+-- =.-||||-|-=
T Consensus 287 FiDeIDAI~pkRe~a-----------qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP-----DslDpaLRRaG 350 (802)
T KOG0733|consen 287 FIDEIDAITPKREEA-----------QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP-----DSLDPALRRAG 350 (802)
T ss_pred EeecccccccchhhH-----------HHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC-----cccCHHHhccc
Confidence 999999997765310 01233556655444443211 001 1249999998632 24577777644
Q ss_pred cc---eeeecCCCC
Q 003070 245 AL---QAVSIPSGG 255 (850)
Q Consensus 245 ~L---Q~V~Vps~~ 255 (850)
+| ..+.||+..
T Consensus 351 RFdrEI~l~vP~e~ 364 (802)
T KOG0733|consen 351 RFDREICLGVPSET 364 (802)
T ss_pred cccceeeecCCchH
Confidence 44 456667654
No 36
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.93 E-value=1.9e-08 Score=118.71 Aligned_cols=205 Identities=13% Similarity=0.168 Sum_probs=141.2
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCC-----CCc-hh
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGV-----SSH-SE 557 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~-----~~~-~~ 557 (850)
..++|++.++..+.+.+.+.- +.+.++|+.|++|+||+.+|++|..........||.|||....+.. =|+ -+
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a--~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~~~ 273 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVA--RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKG 273 (534)
T ss_pred CceEECCHHHHHHHHHHHHHh--CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCCCC
Confidence 478999999999998887654 4577899999999999999999999988888899999998652100 000 01
Q ss_pred hHHHHhh-------hCCCEEEeeccccccCHHHHHHHHhhhccCccC----------ceEEEEecCCCchhhhhhhhccc
Q 003070 558 MLMGTLK-------NYEKLVVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTKGDSSNYEERIENQDS 620 (850)
Q Consensus 558 ~l~e~vr-------~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~----------n~Iii~Tsn~~~~~~e~~~~~~~ 620 (850)
.++++.+ .--..+++|||||+.++.+|..|+++|++|.+. ++-||+||+..- .
T Consensus 274 ~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l--~-------- 343 (534)
T TIGR01817 274 AFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDL--E-------- 343 (534)
T ss_pred ccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCH--H--------
Confidence 1122221 222468999999999999999999999999873 456666654210 0
Q ss_pred ccchhheecccCcccccchhhhhhhhccCCCCCccccccccccccccccCCCcccccccCcccccccccccCCcCccCCC
Q 003070 621 VINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGEQ 700 (850)
Q Consensus 621 ~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~~~~s~~~lDLNl~a~e~e~~~~~ 700 (850)
+.
T Consensus 344 -----------------------------------~~------------------------------------------- 345 (534)
T TIGR01817 344 -----------------------------------EA------------------------------------------- 345 (534)
T ss_pred -----------------------------------HH-------------------------------------------
Confidence 00
Q ss_pred CCCCCCCCcccchhhcccCCCCCchhhhcccc-eEeccCCCCCchhHHHHHHHHHHHHHHHHHccCCceEEEeCHHHHHH
Q 003070 701 KPGELSPISSDLTRENITNPALSNGFLDLIQN-RFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEE 779 (850)
Q Consensus 701 ~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~-~vvF~~l~~~~~~l~~~i~~~~~~~~~~~l~~~~~~~l~vd~~~~e~ 779 (850)
++ ...|.++|+.|+.. .|...||.....++.. +...+...+.+.++.. +.+++++++.
T Consensus 346 -------------~~---~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~-L~~~~l~~~~~~~~~~----~~~s~~a~~~ 404 (534)
T TIGR01817 346 -------------VA---KGEFRADLYYRINVVPIFLPPLRERREDIPL-LAEAFLEKFNRENGRP----LTITPSAIRV 404 (534)
T ss_pred -------------HH---cCCCCHHHHHHhcCCeeeCCCcccccccHHH-HHHHHHHHHHHHcCCC----CCCCHHHHHH
Confidence 00 14688999999986 5666778742123432 2333444455544433 5799999999
Q ss_pred HHhccCCcch-hHHHHHHHHHH
Q 003070 780 VLIGSGFFHN-SLFEKWLKEVF 800 (850)
Q Consensus 780 l~~~~~~~~~-r~le~wie~vl 800 (850)
|.... |.|+ |.+++.|+..+
T Consensus 405 L~~~~-WPGNvrEL~~v~~~a~ 425 (534)
T TIGR01817 405 LMSCK-WPGNVRELENCLERTA 425 (534)
T ss_pred HHhCC-CCChHHHHHHHHHHHH
Confidence 98874 8774 56777776654
No 37
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=1.9e-08 Score=119.61 Aligned_cols=114 Identities=14% Similarity=0.197 Sum_probs=83.7
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC--------------------------
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD-------------------------- 538 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~-------------------------- 538 (850)
.|+||++++..+.+++... +---.+||.||.|+|||++|+.||+.++-...
T Consensus 17 dviGQe~vv~~L~~~l~~~---rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~ 93 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQ---RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFV 93 (618)
T ss_pred HhcCcHHHHHHHHHHHHcC---CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCC
Confidence 4689999999998887753 33456789999999999999999999873210
Q ss_pred ceEEecCccccCCCCCchh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 539 LLFHIDMRKRNDGVSSHSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 539 ~~i~idms~~~~~~~~~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.++.+|-. ...-++ .+.+.++..| |.|++|||+|.-....+|.|+..+|+-- .+++|||+++.
T Consensus 94 D~~eldaa-----s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP-~~~~fIL~Ttd 163 (618)
T PRK14951 94 DYTELDAA-----SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPP-EYLKFVLATTD 163 (618)
T ss_pred ceeecCcc-----cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCC-CCeEEEEEECC
Confidence 12222211 111133 3555556566 7899999999999999999999999832 47889988864
No 38
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=1.9e-08 Score=122.17 Aligned_cols=120 Identities=18% Similarity=0.261 Sum_probs=83.2
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC---c-------------eEEecCcc
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD---L-------------LFHIDMRK 547 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~---~-------------~i~idms~ 547 (850)
+.|+||+.++..+.++|.. ||----+||.||.|+|||.+|+.||+.|++... . ..+.|.-+
T Consensus 16 ddIIGQe~Iv~~LknaI~~---~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQ---QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred HHhcCcHHHHHHHHHHHHh---CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 4578999999999888764 333344589999999999999999999987421 0 00111111
Q ss_pred ccCCCCCchh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 548 RNDGVSSHSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 548 ~~~~~~~~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.+.....-++ .|.+.++.+| |.|++|||+++-....++.|+..||+-. .+++|||+++.
T Consensus 93 idAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP-~~vrFILaTTe 158 (944)
T PRK14949 93 VDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPP-EHVKFLLATTD 158 (944)
T ss_pred eccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccC-CCeEEEEECCC
Confidence 1111011133 4555555444 7899999999999999999999999832 26788887753
No 39
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.89 E-value=2e-08 Score=119.61 Aligned_cols=120 Identities=16% Similarity=0.230 Sum_probs=83.6
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCc----------eEEecCc------c
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDL----------LFHIDMR------K 547 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~----------~i~idms------~ 547 (850)
..|+||++++..+..++.. ++.---+||.||.|+|||.+|+.||+.|+..... ...++.. +
T Consensus 16 ddIIGQe~vv~~L~~ai~~---~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlE 92 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDE---GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLE 92 (709)
T ss_pred HHHcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEE
Confidence 3579999999999998774 4444567899999999999999999998764210 0011111 1
Q ss_pred ccCCCCCchhhH---HHHhhh----CCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 548 RNDGVSSHSEML---MGTLKN----YEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 548 ~~~~~~~~~~~l---~e~vr~----~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.+.+....++.+ .+.+.. ..|.||+|||+++-....++.|++.||+- -.+++|||+++.
T Consensus 93 idaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP-p~~v~fILaTtd 158 (709)
T PRK08691 93 IDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP-PEHVKFILATTD 158 (709)
T ss_pred EeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC-CCCcEEEEEeCC
Confidence 111111224433 333333 34689999999999999999999999972 257899998864
No 40
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=2.2e-08 Score=116.22 Aligned_cols=114 Identities=16% Similarity=0.209 Sum_probs=82.1
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC---------------------ceEE
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD---------------------LLFH 542 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~---------------------~~i~ 542 (850)
+.|+||++++..+..++. .|+....+||.||+|+|||++|+++|..++.... .++.
T Consensus 14 ~divGq~~i~~~L~~~i~---~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 14 SEVVGQDHVKKLIINALK---KNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred HHccCcHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 348999999888777665 3444456789999999999999999999875321 2333
Q ss_pred ecCccccCCCCCchh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 543 IDMRKRNDGVSSHSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 543 idms~~~~~~~~~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+|-+. ..| ++ .+.+.++..| |.||++||++.-....++.|+..+++-. .+++||++++
T Consensus 91 l~aa~----~~g-id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~-~~vv~Ilatt 155 (472)
T PRK14962 91 LDAAS----NRG-IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPP-SHVVFVLATT 155 (472)
T ss_pred EeCcc----cCC-HHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCC-CcEEEEEEeC
Confidence 33211 111 23 4555555555 5799999999998899999999999832 3788888775
No 41
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=5.2e-08 Score=114.62 Aligned_cols=132 Identities=23% Similarity=0.307 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhh--hCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc-
Q 003070 471 AKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECK--SAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK- 547 (850)
Q Consensus 471 ~~~~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r--~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~- 547 (850)
.+.+++...+.|.+.=.|=+++=..|-+-+...+ .+....-++|.||+|||||.|++.+|+.+ ...|+||-+.=
T Consensus 310 ~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~RkfvR~sLGGv 386 (782)
T COG0466 310 DKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKFVRISLGGV 386 (782)
T ss_pred hhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCEEEEecCcc
Confidence 3457899999999999999999899988665443 33455789999999999999999999999 68999997653
Q ss_pred ccCC-----CCCchh----hHHHHhh----hCCCEEEeeccccccCHHHH----HHHHhhhccCc--------------c
Q 003070 548 RNDG-----VSSHSE----MLMGTLK----NYEKLVVLVEDIDLADPQFI----KILADGFETEN--------------F 596 (850)
Q Consensus 548 ~~~~-----~~~~~~----~l~e~vr----~~P~sVvlldeiekA~~~v~----~~l~q~~d~G~--------------l 596 (850)
+|++ -.+|+| ++..+++ .|| |+|||||||-..+++ ..||.++|--. |
T Consensus 387 rDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP--v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 387 RDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP--VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred ccHHHhccccccccccCChHHHHHHHHhCCcCC--eEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch
Confidence 2331 235775 5555554 466 899999999655443 46777766443 3
Q ss_pred CceEEEEecCC
Q 003070 597 GKVIFVLTKGD 607 (850)
Q Consensus 597 ~n~Iii~Tsn~ 607 (850)
++++||.|+|.
T Consensus 465 S~VmFiaTANs 475 (782)
T COG0466 465 SKVMFIATANS 475 (782)
T ss_pred hheEEEeecCc
Confidence 47777777774
No 42
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.88 E-value=3.6e-08 Score=116.20 Aligned_cols=108 Identities=16% Similarity=0.198 Sum_probs=79.0
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHh-------cCCCCceEEecCcc--ccCC----
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESV-------FGSTDLLFHIDMRK--RNDG---- 551 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~l-------fgs~~~~i~idms~--~~~~---- 551 (850)
.++||++++..+-.++ .+....-+||.||+|+|||.+|+++.+.. |.....|+.+|++. +++.
T Consensus 66 ~iiGqs~~i~~l~~al----~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~ 141 (531)
T TIGR02902 66 EIIGQEEGIKALKAAL----CGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIAD 141 (531)
T ss_pred HeeCcHHHHHHHHHHH----hCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccch
Confidence 4799999998887653 23334567899999999999999998742 44457899999863 1110
Q ss_pred -------CCCchh-----------hHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCcc
Q 003070 552 -------VSSHSE-----------MLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 552 -------~~~~~~-----------~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l 596 (850)
.|.|.+ .-.+++.+....+++||||+..++..|+.|++.|+++++
T Consensus 142 ~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~ 204 (531)
T TIGR02902 142 PLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKV 204 (531)
T ss_pred hhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCee
Confidence 011111 123345566678999999999999999999999999874
No 43
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.87 E-value=4.7e-08 Score=114.49 Aligned_cols=119 Identities=15% Similarity=0.169 Sum_probs=84.3
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCce----------------EEecCccc
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLL----------------FHIDMRKR 548 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~----------------i~idms~~ 548 (850)
.|+||++++..+..+|. .|+-.-.+||.||.|+|||.+|+.||+.+++....= .+.|.-+.
T Consensus 15 eiiGqe~v~~~L~~~I~---~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el 91 (535)
T PRK08451 15 ELIGQESVSKTLSLALD---NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM 91 (535)
T ss_pred HccCcHHHHHHHHHHHH---cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence 48999999998888875 455445678999999999999999999998532110 01111111
Q ss_pred cCCCCCchhhHHHHhhh---C----CCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 549 NDGVSSHSEMLMGTLKN---Y----EKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 549 ~~~~~~~~~~l~e~vr~---~----P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
+......++.+.+.+.. . +|.||++||++.-..+.++.|+..||+- =.+++|||+++.
T Consensus 92 daas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp-p~~t~FIL~ttd 156 (535)
T PRK08451 92 DAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP-PSYVKFILATTD 156 (535)
T ss_pred ccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc-CCceEEEEEECC
Confidence 11111124544444433 4 4689999999999999999999999985 347899998854
No 44
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.87 E-value=1.3e-08 Score=106.61 Aligned_cols=105 Identities=17% Similarity=0.138 Sum_probs=70.0
Q ss_pred ccCCCchHHHHHHHHHHHHhhh-CCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHH
Q 003070 484 ENVPWQFDSIHSIVEVLVECKS-AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGT 562 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~-gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~ 562 (850)
+.++||++.+....-.+..++. +.+...++|.||+|+|||+||..||..+ ...|..+.-..-+ . .+.|+..
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg~~i~--k---~~dl~~i 95 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFKITSGPAIE--K---AGDLAAI 95 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EEEEECCC----S---CHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeEeccchhhh--h---HHHHHHH
Confidence 4689999999887666666654 4667899999999999999999999988 2344433221110 0 1223333
Q ss_pred hhh-CCCEEEeeccccccCHHHHHHHHhhhccCcc
Q 003070 563 LKN-YEKLVVLVEDIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 563 vr~-~P~sVvlldeiekA~~~v~~~l~q~~d~G~l 596 (850)
+.. ++..|+|+|||..-...++..|+.+||+|++
T Consensus 96 l~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~i 130 (233)
T PF05496_consen 96 LTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKI 130 (233)
T ss_dssp HHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEE
T ss_pred HHhcCCCcEEEEechhhccHHHHHHHHHHhccCeE
Confidence 322 5678999999999999999999999999886
No 45
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.87 E-value=7.1e-08 Score=105.84 Aligned_cols=113 Identities=11% Similarity=0.118 Sum_probs=80.8
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCch-hhHHHHh
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EMLMGTL 563 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~-~~l~e~v 563 (850)
.|+||++++..+...+. .|+.-..+||.||.|+|||.+|+++|+.+ ...++.++.+. . . ...+ +.+.+..
T Consensus 22 ~~~~~~~~~~~l~~~~~---~~~~~~~lll~G~~G~GKT~la~~l~~~~---~~~~~~i~~~~-~-~-~~~i~~~l~~~~ 92 (316)
T PHA02544 22 ECILPAADKETFKSIVK---KGRIPNMLLHSPSPGTGKTTVAKALCNEV---GAEVLFVNGSD-C-R-IDFVRNRLTRFA 92 (316)
T ss_pred HhcCcHHHHHHHHHHHh---cCCCCeEEEeeCcCCCCHHHHHHHHHHHh---CccceEeccCc-c-c-HHHHHHHHHHHH
Confidence 46899998888877765 35545677789999999999999999987 23566676654 1 1 1111 1233332
Q ss_pred hh----CCCEEEeecccccc-CHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 564 KN----YEKLVVLVEDIDLA-DPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 564 r~----~P~sVvlldeiekA-~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.. .++.||+|||+|+. ....++.|...++.-. .++.||+|+|.
T Consensus 93 ~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~-~~~~~Ilt~n~ 140 (316)
T PHA02544 93 STVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYS-KNCSFIITANN 140 (316)
T ss_pred HhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcC-CCceEEEEcCC
Confidence 22 35789999999988 7788888888888633 47899999973
No 46
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.86 E-value=5.9e-08 Score=115.02 Aligned_cols=114 Identities=18% Similarity=0.210 Sum_probs=86.6
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCC---------------------CCceEE
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGS---------------------TDLLFH 542 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs---------------------~~~~i~ 542 (850)
..|+||++++..+-+++.. |+..--+||.||.|+|||.+|+.||+.+... ...++.
T Consensus 16 ~~viGq~~v~~~L~~~i~~---~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~e 92 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQ---GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIE 92 (559)
T ss_pred HhccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEE
Confidence 4679999999998888775 4434567899999999999999999998742 234455
Q ss_pred ecCccccCCCCCchh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 543 IDMRKRNDGVSSHSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 543 idms~~~~~~~~~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
||.+.. ..++ .|.+.+...| |.|+++||+++.....++.|+..+|+- -.++||||+++
T Consensus 93 idaas~-----~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep-p~~~ifIlatt 157 (559)
T PRK05563 93 IDAASN-----NGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP-PAHVIFILATT 157 (559)
T ss_pred eecccc-----CCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC-CCCeEEEEEeC
Confidence 544311 1233 5666666555 789999999999999999999999974 34889999775
No 47
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.86 E-value=4.9e-08 Score=108.50 Aligned_cols=118 Identities=16% Similarity=0.231 Sum_probs=85.9
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCC---------------------CceEE
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGST---------------------DLLFH 542 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~---------------------~~~i~ 542 (850)
+.|+||++++..+.+++. .|+..-.+||.||+|+|||.+|++||+.+++.. ..++.
T Consensus 14 ~~iig~~~~~~~l~~~~~---~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~ 90 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIK---NGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIE 90 (355)
T ss_pred hhccCcHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE
Confidence 357899999999988875 455456789999999999999999999997542 22344
Q ss_pred ecCccccCCCCCchhhHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 543 IDMRKRNDGVSSHSEMLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 543 idms~~~~~~~~~~~~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
+|-... ....-+..+.+.+...| +.||++||+|+-....++.|+..+++- -.+++||++++.
T Consensus 91 ~~~~~~--~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~-~~~~~lIl~~~~ 156 (355)
T TIGR02397 91 IDAASN--NGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP-PEHVVFILATTE 156 (355)
T ss_pred eecccc--CCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCC-ccceeEEEEeCC
Confidence 433211 00011234666666655 479999999999999999999999763 347888888753
No 48
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=8.8e-08 Score=107.68 Aligned_cols=119 Identities=12% Similarity=0.204 Sum_probs=83.9
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCC-----CC--ceEEecCccccCCCCCch
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGS-----TD--LLFHIDMRKRNDGVSSHS 556 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs-----~~--~~i~idms~~~~~~~~~~ 556 (850)
+.|+||++++..+.+++.. |+..-.+||.||+|+|||++|++||+.++.. .+ ++..+++.........-+
T Consensus 17 ~~iig~~~~~~~l~~~i~~---~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i 93 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIEN---NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI 93 (367)
T ss_pred HhcCCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH
Confidence 3568999999998888863 5445688999999999999999999999862 11 222233322110000112
Q ss_pred hhHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 557 EMLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 557 ~~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
..+.+.++..| +.||++||+++.....++.|+..+++- -.+++||++++
T Consensus 94 ~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~-~~~~~~Il~~~ 146 (367)
T PRK14970 94 RNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP-PAHAIFILATT 146 (367)
T ss_pred HHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCC-CCceEEEEEeC
Confidence 24455555544 679999999999999999999988772 34788998875
No 49
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.84 E-value=2.8e-08 Score=121.88 Aligned_cols=115 Identities=15% Similarity=0.114 Sum_probs=83.7
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCC-----------------------Cce
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGST-----------------------DLL 540 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~-----------------------~~~ 540 (850)
+.|+||+.++..+..+|.. |+-.-.+||.||.|+|||.+|+.||+.|+-.. ..+
T Consensus 15 ~eiiGqe~v~~~L~~~i~~---~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv 91 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDS---GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDV 91 (824)
T ss_pred HHhcCcHHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcE
Confidence 3578999999999888874 44444678999999999999999999997321 123
Q ss_pred EEecCccccCCCCCchhhH---HHHhh----hCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 541 FHIDMRKRNDGVSSHSEML---MGTLK----NYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 541 i~idms~~~~~~~~~~~~l---~e~vr----~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
+.||... ..-++.+ .+.+. ...|.||+|||+|+-+..-+|.||..||+= =.+++|||+++.
T Consensus 92 ~eidaas-----~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp-P~~~~fIl~tt~ 159 (824)
T PRK07764 92 TEIDAAS-----HGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP-PEHLKFIFATTE 159 (824)
T ss_pred EEecccc-----cCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC-CCCeEEEEEeCC
Confidence 3333321 1224433 22222 356789999999999999999999999982 248999998863
No 50
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.84 E-value=2.2e-08 Score=111.44 Aligned_cols=109 Identities=15% Similarity=0.137 Sum_probs=77.8
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchh--hHHHH
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSE--MLMGT 562 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~--~l~e~ 562 (850)
.|+||++.+-. -..|.+.-.+....+++|.||+|+|||+||+.||... ...|+.|+--.. |.-+ .+.|.
T Consensus 25 e~vGQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~~-----gvkdlr~i~e~ 95 (436)
T COG2256 25 EVVGQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVTS-----GVKDLREIIEE 95 (436)
T ss_pred HhcChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh---CCceEEeccccc-----cHHHHHHHHHH
Confidence 46888888754 3444444445678999999999999999999999966 456776653221 2112 33333
Q ss_pred hhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEec
Q 003070 563 LKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTK 605 (850)
Q Consensus 563 vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Ts 605 (850)
-+++- ..|+|+|||..=+..=|+.||-.+|+|.+ |+|=+|
T Consensus 96 a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~i---ilIGAT 139 (436)
T COG2256 96 ARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTI---ILIGAT 139 (436)
T ss_pred HHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeE---EEEecc
Confidence 33332 47999999999999999999999999975 444444
No 51
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.83 E-value=2.8e-08 Score=107.16 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=86.6
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCce-EEe-cCccccCCCCCch------
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLL-FHI-DMRKRNDGVSSHS------ 556 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~-i~i-dms~~~~~~~~~~------ 556 (850)
.+.||+.+|..+-+++.+ | -.--+||.||.|+|||..|+++|+.+|| ++.| .++ +...-++++-+.+
T Consensus 37 e~~gQe~vV~~L~~a~~~-~---~lp~~LFyGPpGTGKTStalafar~L~~-~~~~~~rvl~lnaSderGisvvr~Kik~ 111 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLR-R---ILPHYLFYGPPGTGKTSTALAFARALNC-EQLFPCRVLELNASDERGISVVREKIKN 111 (346)
T ss_pred hhcchHHHHHHHHHHHhh-c---CCceEEeeCCCCCcHhHHHHHHHHHhcC-ccccccchhhhcccccccccchhhhhcC
Confidence 468999999999999986 2 3457999999999999999999999999 2222 111 1111122222211
Q ss_pred -hhHHHHh------hhCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 557 -EMLMGTL------KNYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 557 -~~l~e~v------r~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
..++... --.||-||+|||.|---.+.|+.|.+.||+ .-+++.|||-||-
T Consensus 112 fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~-~s~~trFiLIcny 168 (346)
T KOG0989|consen 112 FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED-FSRTTRFILICNY 168 (346)
T ss_pred HHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc-cccceEEEEEcCC
Confidence 1333332 235789999999999999999999999999 5579999999984
No 52
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.82 E-value=7.6e-08 Score=114.11 Aligned_cols=115 Identities=15% Similarity=0.132 Sum_probs=84.9
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCC-----------------------Cce
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGST-----------------------DLL 540 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~-----------------------~~~ 540 (850)
+.|+||++++..+..++. +|+..--+||.||.|+|||.+|+.||+.|+... ..+
T Consensus 13 ~eivGq~~i~~~L~~~i~---~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dv 89 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALD---AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDV 89 (584)
T ss_pred HHhcCcHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceE
Confidence 357899999999998886 455445678999999999999999999988421 223
Q ss_pred EEecCccccCCCCCchh---hHHHHhhh----CCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 541 FHIDMRKRNDGVSSHSE---MLMGTLKN----YEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 541 i~idms~~~~~~~~~~~---~l~e~vr~----~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
+.+|.+. ..-++ .|.+.+.. .+|.||++||++.-+...+|.|+..||+= =.+++|||+++.
T Consensus 90 ieidaas-----~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEp-p~~~~fIL~tte 157 (584)
T PRK14952 90 VELDAAS-----HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEP-PEHLIFIFATTE 157 (584)
T ss_pred EEecccc-----ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcC-CCCeEEEEEeCC
Confidence 4444321 11244 34444443 45789999999999999999999999971 238999998863
No 53
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.82 E-value=6.9e-08 Score=107.43 Aligned_cols=206 Identities=10% Similarity=0.082 Sum_probs=137.9
Q ss_pred CCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCC-----CCch-hhH
Q 003070 486 VPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGV-----SSHS-EML 559 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~-----~~~~-~~l 559 (850)
++|+..++..+-+.+.+.- +.+..+|+.|++|+||+.+|++|-..-......|+.+|+....+.- =|+. +.+
T Consensus 1 liG~S~~m~~~~~~~~~~a--~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~ 78 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA--PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAF 78 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh--CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccc
Confidence 4788888888888877653 4578899999999999999999988776677899999998542100 0000 111
Q ss_pred HHH-------hhhCCCEEEeeccccccCHHHHHHHHhhhccCccC----------ceEEEEecCCCchhhhhhhhccccc
Q 003070 560 MGT-------LKNYEKLVVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTKGDSSNYEERIENQDSVI 622 (850)
Q Consensus 560 ~e~-------vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~----------n~Iii~Tsn~~~~~~e~~~~~~~~~ 622 (850)
+++ +..--..++|||||+...+.+|..|+++|++|.+. |+-||.|||..- .
T Consensus 79 ~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l--~---------- 146 (329)
T TIGR02974 79 TGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADL--P---------- 146 (329)
T ss_pred cCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhH--H----------
Confidence 111 22233579999999999999999999999999863 455565554210 0
Q ss_pred chhheecccCcccccchhhhhhhhccCCCCCccccccccccccccccCCCcccccccCcccccccccccCCcCccCCCCC
Q 003070 623 NMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGEQKP 702 (850)
Q Consensus 623 ~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~~~~s~~~lDLNl~a~e~e~~~~~~~ 702 (850)
+.
T Consensus 147 ---------------------------------~~--------------------------------------------- 148 (329)
T TIGR02974 147 ---------------------------------AL--------------------------------------------- 148 (329)
T ss_pred ---------------------------------HH---------------------------------------------
Confidence 00
Q ss_pred CCCCCCcccchhhcccCCCCCchhhhccc-ceEeccCCCCCchhHHHHHHHHHHHHHHHHHccCCceEEEeCHHHHHHHH
Q 003070 703 GELSPISSDLTRENITNPALSNGFLDLIQ-NRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVL 781 (850)
Q Consensus 703 ~~~~~~~sd~~~e~~~~~~~~~efLnriD-~~vvF~~l~~~~~~l~~~i~~~~~~~~~~~l~~~~~~~l~vd~~~~e~l~ 781 (850)
++ ...|+++|+.|+. ..|...||...-+++.. +...+...+.+.++.. +...+++++++.|.
T Consensus 149 -----------~~---~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~-L~~~fl~~~~~~~~~~--~~~~ls~~a~~~L~ 211 (329)
T TIGR02974 149 -----------AA---EGRFRADLLDRLAFDVITLPPLRERQEDIML-LAEHFAIRMARELGLP--LFPGFTPQAREQLL 211 (329)
T ss_pred -----------hh---cCchHHHHHHHhcchhcCCCchhhhhhhHHH-HHHHHHHHHHHHhCCC--CCCCcCHHHHHHHH
Confidence 00 1357788888885 47788888753223422 2333444455555544 33579999999998
Q ss_pred hccCCcch-hHHHHHHHHHHh
Q 003070 782 IGSGFFHN-SLFEKWLKEVFQ 801 (850)
Q Consensus 782 ~~~~~~~~-r~le~wie~vl~ 801 (850)
... |.|+ |.|++.|+..+.
T Consensus 212 ~y~-WPGNvrEL~n~i~~~~~ 231 (329)
T TIGR02974 212 EYH-WPGNVRELKNVVERSVY 231 (329)
T ss_pred hCC-CCchHHHHHHHHHHHHH
Confidence 875 8874 567766666543
No 54
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=9.9e-08 Score=110.88 Aligned_cols=115 Identities=16% Similarity=0.202 Sum_probs=84.5
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhc---C------------------CCCceEE
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVF---G------------------STDLLFH 542 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lf---g------------------s~~~~i~ 542 (850)
+.|+||+.++..+.+++.. |+.--.+||.||.|+|||++|+.||+.+. | +...++.
T Consensus 13 ~dliGQe~vv~~L~~a~~~---~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTL---NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 3478999999988877764 44444678999999999999999998763 1 2233444
Q ss_pred ecCccccCCCCCchh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 543 IDMRKRNDGVSSHSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 543 idms~~~~~~~~~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
+|.+.. .-++ .+.+.++..| |.|+++||++.-....+|.|+..||+-- .+++|||+++.
T Consensus 90 idaas~-----~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp-~~v~fIlatte 155 (491)
T PRK14964 90 IDAASN-----TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPA-PHVKFILATTE 155 (491)
T ss_pred EecccC-----CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCC-CCeEEEEEeCC
Confidence 443311 1233 4556666666 5699999999999999999999999732 47899998863
No 55
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=5.7e-08 Score=115.59 Aligned_cols=120 Identities=14% Similarity=0.211 Sum_probs=85.9
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCc----------------eEEecCcc
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDL----------------LFHIDMRK 547 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~----------------~i~idms~ 547 (850)
+.|+||++++..+-.+|.. |+----+||.||.|+|||++|+.||+.++..... ....|.-+
T Consensus 16 ~~iiGq~~v~~~L~~~i~~---~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~e 92 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDT---GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFE 92 (576)
T ss_pred HHccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeee
Confidence 3679999999998888764 4444567899999999999999999999853210 00112222
Q ss_pred ccCCCCCchh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 548 RNDGVSSHSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 548 ~~~~~~~~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.+......++ .|.+.++..| |.|++|||+++-+...+|.|+..||+- -.+++|||+++.
T Consensus 93 id~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep-p~~~~fIl~t~~ 158 (576)
T PRK14965 93 IDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP-PPHVKFIFATTE 158 (576)
T ss_pred eeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC-CCCeEEEEEeCC
Confidence 2211112233 4556666555 679999999999999999999999973 348999998864
No 56
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.81 E-value=5.3e-09 Score=100.93 Aligned_cols=91 Identities=18% Similarity=0.252 Sum_probs=66.9
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC----------C--CCCch-hhHHHHhhhCCCEEEeeccccc
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND----------G--VSSHS-EMLMGTLKNYEKLVVLVEDIDL 578 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~----------~--~~~~~-~~l~e~vr~~P~sVvlldeiek 578 (850)
+|+.||+|+|||+||+.||+.+ ...++.+.++.... . ...+. +.|+.+++ + -.|++||||++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~-~~il~lDEin~ 76 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-K-GGILVLDEINR 76 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-E-EEEEEESSCGG
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hcceEEEEeccccccccceeeeeeccccccccccccccccc-c-eeEEEECCccc
Confidence 6899999999999999999999 56777777765311 0 11111 24555555 2 36999999999
Q ss_pred cCHHHHHHHHhhhccCccC------------------ceEEEEecCC
Q 003070 579 ADPQFIKILADGFETENFG------------------KVIFVLTKGD 607 (850)
Q Consensus 579 A~~~v~~~l~q~~d~G~l~------------------n~Iii~Tsn~ 607 (850)
|++.++..|++++|.+++. +..||+|+|.
T Consensus 77 a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~ 123 (139)
T PF07728_consen 77 APPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNP 123 (139)
T ss_dssp --HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESS
T ss_pred CCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcC
Confidence 9999999999999999862 2799999994
No 57
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.80 E-value=1.2e-07 Score=113.38 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=83.5
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCc--e--------E------EecCcc
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDL--L--------F------HIDMRK 547 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~--~--------i------~idms~ 547 (850)
+.|+||+.++..+..++... +----+||.||.|+|||.+|+.||+.++..... . . +.|+-+
T Consensus 16 ~divGQe~vv~~L~~~l~~~---rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ie 92 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG---RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIE 92 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC---CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCcee
Confidence 45789999999998888753 333446799999999999999999999764210 0 0 011111
Q ss_pred ccCCCCCchh---hHHHHhhh----CCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 548 RNDGVSSHSE---MLMGTLKN----YEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 548 ~~~~~~~~~~---~l~e~vr~----~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.+.....-++ .|.+.+.. .+|.|++|||+++-....+|.||..||+- -.+++|||+|+.
T Consensus 93 idaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP-p~~v~FIL~Tt~ 158 (647)
T PRK07994 93 IDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-PEHVKFLLATTD 158 (647)
T ss_pred ecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcC-CCCeEEEEecCC
Confidence 1111111233 34444443 35789999999999999999999999982 237889998764
No 58
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=1.1e-07 Score=112.08 Aligned_cols=114 Identities=18% Similarity=0.269 Sum_probs=83.1
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC---------------------ceEEe
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD---------------------LLFHI 543 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~---------------------~~i~i 543 (850)
.|+||++++..+..++.. ++.---+||.||.|+|||.+|+.||+.++.... .++.+
T Consensus 17 divGq~~v~~~L~~~i~~---~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQ---QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred HhcCcHHHHHHHHHHHHc---CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 478999999999988874 343345679999999999999999999976321 12222
Q ss_pred cCccccCCCCCchh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 544 DMRKRNDGVSSHSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 544 dms~~~~~~~~~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
|.+. ..-++ .|.+.+...| |.|+++||+|+-....+|.|+..||+ .-.+++|||+++.
T Consensus 94 ~~~~-----~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEe-pp~~~~fIL~t~d 158 (527)
T PRK14969 94 DAAS-----NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE-PPEHVKFILATTD 158 (527)
T ss_pred eccc-----cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhC-CCCCEEEEEEeCC
Confidence 2211 11233 3444455555 57999999999999999999999999 2347888888764
No 59
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=1.3e-07 Score=110.78 Aligned_cols=113 Identities=21% Similarity=0.220 Sum_probs=82.1
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCC--------------------CCceEEec
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGS--------------------TDLLFHID 544 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs--------------------~~~~i~id 544 (850)
.|+||++++..+..++.. ++..-.+||.||+|+|||++|++||+.++.. ...++.||
T Consensus 15 dvvGq~~v~~~L~~~i~~---~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~ 91 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQ---GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEID 91 (504)
T ss_pred HhcChHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEec
Confidence 479999999988888775 3333456899999999999999999998632 12233333
Q ss_pred CccccCCCCCchh---hHHHHhhhC----CCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 545 MRKRNDGVSSHSE---MLMGTLKNY----EKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 545 ms~~~~~~~~~~~---~l~e~vr~~----P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
-+. ..+ ++ .+.+.+... ++.||+|||++......++.|+..|++.. .+++||++++
T Consensus 92 ~~~----~~~-vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~-~~t~~Il~t~ 154 (504)
T PRK14963 92 AAS----NNS-VEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPP-EHVIFILATT 154 (504)
T ss_pred ccc----cCC-HHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCC-CCEEEEEEcC
Confidence 221 111 22 355555544 45799999999999999999999999853 3788888775
No 60
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.80 E-value=8.4e-08 Score=112.09 Aligned_cols=118 Identities=15% Similarity=0.199 Sum_probs=81.9
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC-----c---------------eEEec
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD-----L---------------LFHID 544 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~-----~---------------~i~id 544 (850)
.++||++++..+..++.. |+.-..+||.||.|+|||.+|+.+|+.+..... . ..+.|
T Consensus 22 dliGq~~vv~~L~~ai~~---~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D 98 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILN---DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPD 98 (507)
T ss_pred HhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCc
Confidence 358999999988887764 444456789999999999999999998864321 0 00011
Q ss_pred CccccCCCCCchh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 545 MRKRNDGVSSHSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 545 ms~~~~~~~~~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.-+.+.+....++ .+.+.+...| |.||++||++......++.|+..||+- -.+++||++++
T Consensus 99 v~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep-p~~~vfI~aTt 166 (507)
T PRK06645 99 IIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP-PPHIIFIFATT 166 (507)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhc-CCCEEEEEEeC
Confidence 1111111223344 3445555554 679999999999999999999999973 23788888775
No 61
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.78 E-value=8.6e-08 Score=109.72 Aligned_cols=108 Identities=12% Similarity=0.133 Sum_probs=76.2
Q ss_pred cCCCchHHHHH---HHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHH
Q 003070 485 NVPWQFDSIHS---IVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMG 561 (850)
Q Consensus 485 ~V~gQ~eai~~---Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e 561 (850)
.++||++++.. +.+.|.. + ....++|.||.|+|||.+|++||+.+ ...++.++..... ..-+..+.+
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~---~-~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~~l~a~~~~---~~~ir~ii~ 82 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEA---G-RLSSMILWGPPGTGKTTLARIIAGAT---DAPFEALSAVTSG---VKDLREVIE 82 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHc---C-CCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccc---HHHHHHHHH
Confidence 47899998776 6666542 2 23478899999999999999999977 3567777654321 001222333
Q ss_pred Hhh----hCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEec
Q 003070 562 TLK----NYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTK 605 (850)
Q Consensus 562 ~vr----~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Ts 605 (850)
..+ ...+.||+||||+......++.|+..+++|. .+||.++
T Consensus 83 ~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~---iilI~at 127 (413)
T PRK13342 83 EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGT---ITLIGAT 127 (413)
T ss_pred HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCc---EEEEEeC
Confidence 332 3356899999999999999999999999875 3444443
No 62
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.77 E-value=1.1e-07 Score=113.08 Aligned_cols=118 Identities=14% Similarity=0.179 Sum_probs=84.1
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCc---eEEecCc---------------
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDL---LFHIDMR--------------- 546 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~---~i~idms--------------- 546 (850)
.|+||+.++..+.+++.. |+.--.+||.||.|+|||.+|+.||+.|+..... -..+++.
T Consensus 25 dliGq~~~v~~L~~~~~~---gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~ 101 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFET---GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHV 101 (598)
T ss_pred HhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCC
Confidence 579999999999998874 5544466799999999999999999998743210 0111111
Q ss_pred ---cccCCCCCchh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 547 ---KRNDGVSSHSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 547 ---~~~~~~~~~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+.+.....-++ .|.+.++..| |.||++||+++-...-+|.|+..||+= -.+++|||+++
T Consensus 102 Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP-p~~~~fIl~tt 170 (598)
T PRK09111 102 DVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEP-PPHVKFIFATT 170 (598)
T ss_pred ceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhC-CCCeEEEEEeC
Confidence 11101111233 4666677666 789999999999999999999999972 24788999875
No 63
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.77 E-value=4.1e-08 Score=105.75 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHHHh-hhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC------CCCCc-------
Q 003070 490 FDSIHSIVEVLVEC-KSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------GVSSH------- 555 (850)
Q Consensus 490 ~eai~~Ia~av~~~-r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~------~~~~~------- 555 (850)
..++..+-+.+..+ ++| .-+||.||+|+|||.+|++||..+ | ..++++++++... .-.+|
T Consensus 4 t~~~~~l~~~~l~~l~~g---~~vLL~G~~GtGKT~lA~~la~~l-g--~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~ 77 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSG---YPVHLRGPAGTGKTTLAMHVARKR-D--RPVMLINGDAELTTSDLVGSYAGYTRKKVHD 77 (262)
T ss_pred CHHHHHHHHHHHHHHhcC---CeEEEEcCCCCCHHHHHHHHHHHh-C--CCEEEEeCCccCCHHHHhhhhcccchhhHHH
Confidence 44555555555444 333 356789999999999999999865 3 5688887765311 00011
Q ss_pred ------------------hhhHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccC---------------ceEEE
Q 003070 556 ------------------SEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG---------------KVIFV 602 (850)
Q Consensus 556 ------------------~~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~---------------n~Iii 602 (850)
-+.|..|.++ ++ +++||||++|++++++.|+++|++|.+. +..||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~g~l~~A~~~-g~-~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvI 155 (262)
T TIGR02640 78 QFIHNVVKLEDIVRQNWVDNRLTLAVRE-GF-TLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVI 155 (262)
T ss_pred HHHHHhhhhhcccceeecCchHHHHHHc-CC-EEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEE
Confidence 1245556553 44 9999999999999999999999998751 56789
Q ss_pred EecCC
Q 003070 603 LTKGD 607 (850)
Q Consensus 603 ~Tsn~ 607 (850)
+|+|.
T Consensus 156 aTsN~ 160 (262)
T TIGR02640 156 FTSNP 160 (262)
T ss_pred EeeCC
Confidence 99994
No 64
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.76 E-value=1.3e-07 Score=109.44 Aligned_cols=118 Identities=15% Similarity=0.151 Sum_probs=83.4
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCc----e-------------EEecCcc
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDL----L-------------FHIDMRK 547 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~----~-------------i~idms~ 547 (850)
.|+||+.++..+-+++.. |+---.+||.||+|+|||++|+.+|+.+++.... . -++|.-+
T Consensus 18 diiGq~~~v~~L~~~i~~---~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~ 94 (451)
T PRK06305 18 EILGQDAVVAVLKNALRF---NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLE 94 (451)
T ss_pred HhcCcHHHHHHHHHHHHc---CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEE
Confidence 578999999988888764 4444567899999999999999999999864210 0 0111111
Q ss_pred ccCCCCCchh---hHHHHhhh----CCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 548 RNDGVSSHSE---MLMGTLKN----YEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 548 ~~~~~~~~~~---~l~e~vr~----~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.+......++ .+.+.+.. .+|.||++||+|+-....++.|++.||+-. .+++||+++|
T Consensus 95 i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~-~~~~~Il~t~ 159 (451)
T PRK06305 95 IDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPP-QHVKFFLATT 159 (451)
T ss_pred eeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCC-CCceEEEEeC
Confidence 1111111122 45555543 468899999999999999999999999942 4888888875
No 65
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.75 E-value=1.3e-07 Score=113.64 Aligned_cols=119 Identities=16% Similarity=0.271 Sum_probs=85.0
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceE-------------EecCccccC
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLF-------------HIDMRKRND 550 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i-------------~idms~~~~ 550 (850)
+.|+||++++..+..+|.. |+..--+||.||.|+|||.+|++||+.++....... ++|.-+.+.
T Consensus 18 ~dIiGQe~~v~~L~~aI~~---~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieida 94 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKS---NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDA 94 (725)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEec
Confidence 3578999999998888864 444456789999999999999999999986432100 001000111
Q ss_pred CC-CC--chhhHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 551 GV-SS--HSEMLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 551 ~~-~~--~~~~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+. -+ -+..|.+.+...| |.|+++||++......++.|+..||+-. .+++||++++
T Consensus 95 asn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP-~~tifILaTt 156 (725)
T PRK07133 95 ASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPP-KHVIFILATT 156 (725)
T ss_pred cccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCC-CceEEEEEcC
Confidence 11 11 1235777777665 5799999999999999999999999843 3788888774
No 66
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.75 E-value=3.5e-08 Score=93.04 Aligned_cols=94 Identities=20% Similarity=0.262 Sum_probs=71.6
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCC----chhhHHHHhhhCC-CEEEeeccccccCHHH---
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSS----HSEMLMGTLKNYE-KLVVLVEDIDLADPQF--- 583 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~----~~~~l~e~vr~~P-~sVvlldeiekA~~~v--- 583 (850)
+|+.||.|+|||.+|+.||+.+ ...++.+|+++......+ .+..+...+++.. .+||+|||+|+.-+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccccccccccccccccccccccccccceeeeeccchhcccccccc
Confidence 5899999999999999999998 477899998875321111 1122333344444 5999999999987765
Q ss_pred --------HHHHHhhhccCcc--CceEEEEecCCC
Q 003070 584 --------IKILADGFETENF--GKVIFVLTKGDS 608 (850)
Q Consensus 584 --------~~~l~q~~d~G~l--~n~Iii~Tsn~~ 608 (850)
.+.|+..|++-.- ++.+||+|||..
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred cccccccccceeeecccccccccccceeEEeeCCh
Confidence 8899999998887 479999999963
No 67
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=1.8e-07 Score=111.99 Aligned_cols=114 Identities=15% Similarity=0.207 Sum_probs=85.7
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCC----------------------CCceE
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGS----------------------TDLLF 541 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs----------------------~~~~i 541 (850)
+.|+||++++..+..++. .|+-.-.+||.||.|+|||++|+.+|..++.. .-+++
T Consensus 17 ~~viGq~~~~~~L~~~i~---~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~ 93 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIA---TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH 93 (614)
T ss_pred HHhcCcHHHHHHHHHHHH---cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE
Confidence 367899999999888876 35555678899999999999999999998721 12233
Q ss_pred EecCccccCCCCCchhh---HHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 542 HIDMRKRNDGVSSHSEM---LMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 542 ~idms~~~~~~~~~~~~---l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.+|.+ ....++. +.+.++..| |.||++||+++-....++.|+..||+= -.+++|||+++
T Consensus 94 ~ld~~-----~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep-p~~tifIL~tt 159 (614)
T PRK14971 94 ELDAA-----SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP-PSYAIFILATT 159 (614)
T ss_pred Eeccc-----ccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC-CCCeEEEEEeC
Confidence 33322 1223443 344446666 789999999999999999999999982 24899999885
No 68
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.73 E-value=1.5e-07 Score=114.21 Aligned_cols=105 Identities=13% Similarity=0.111 Sum_probs=70.2
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHH--
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGT-- 562 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~-- 562 (850)
.++||++.+.. ...+.+.-......+++|.||+|+|||.+|+++|..+ ...++.++.+...- ...-+.+.++
T Consensus 29 d~vGQe~ii~~-~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~lna~~~~i--~dir~~i~~a~~ 102 (725)
T PRK13341 29 EFVGQDHILGE-GRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT---RAHFSSLNAVLAGV--KDLRAEVDRAKE 102 (725)
T ss_pred HhcCcHHHhhh-hHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh---cCcceeehhhhhhh--HHHHHHHHHHHH
Confidence 46899998853 2222222233445789999999999999999999876 34566666442110 0001112222
Q ss_pred -hh-hCCCEEEeeccccccCHHHHHHHHhhhccCc
Q 003070 563 -LK-NYEKLVVLVEDIDLADPQFIKILADGFETEN 595 (850)
Q Consensus 563 -vr-~~P~sVvlldeiekA~~~v~~~l~q~~d~G~ 595 (850)
+. ...+.|++||||+.-....++.|+..+++|.
T Consensus 103 ~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~ 137 (725)
T PRK13341 103 RLERHGKRTILFIDEVHRFNKAQQDALLPWVENGT 137 (725)
T ss_pred HhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCce
Confidence 22 1346799999999999999999999999875
No 69
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.71 E-value=7.9e-08 Score=90.39 Aligned_cols=117 Identities=21% Similarity=0.193 Sum_probs=85.7
Q ss_pred CCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCC--Cchh-----hH
Q 003070 487 PWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVS--SHSE-----ML 559 (850)
Q Consensus 487 ~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~--~~~~-----~l 559 (850)
++|++++..|...+.. ....++++.||+|+|||.+++.++..++.....++.++..+...... .... ..
T Consensus 1 ~~~~~~~~~i~~~~~~----~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (151)
T cd00009 1 VGQEEAIEALREALEL----PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLL 76 (151)
T ss_pred CchHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHH
Confidence 4677777777777653 23458999999999999999999999987778888898876522110 0011 11
Q ss_pred HHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCcc-----CceEEEEecCC
Q 003070 560 MGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENF-----GKVIFVLTKGD 607 (850)
Q Consensus 560 ~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l-----~n~Iii~Tsn~ 607 (850)
......+...+|+|||++...+.....+++.++...- .++.||+|+|.
T Consensus 77 ~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~ 129 (151)
T cd00009 77 FELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNR 129 (151)
T ss_pred HHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCc
Confidence 1223344567999999999988888889998888753 58899999884
No 70
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=2.7e-07 Score=107.73 Aligned_cols=114 Identities=15% Similarity=0.159 Sum_probs=83.0
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC---------------------ceEEe
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD---------------------LLFHI 543 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~---------------------~~i~i 543 (850)
.|+||+.++..+..+|.. |+..--+||.||.|+|||++|+.+|+.++.... .++.+
T Consensus 17 diiGq~~i~~~L~~~i~~---~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKL---QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred HccChHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 478999999999888864 444456889999999999999999999984211 12222
Q ss_pred cCccccCCCCC--chhhHHHHhhhCCC----EEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 544 DMRKRNDGVSS--HSEMLMGTLKNYEK----LVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 544 dms~~~~~~~~--~~~~l~e~vr~~P~----sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
|-+ +..| .+..|.+.++..|+ .|+++||+++-....++.|+..|++-.- +++||++++
T Consensus 94 daa----s~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~-~~v~Il~tt 157 (486)
T PRK14953 94 DAA----SNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPP-RTIFILCTT 157 (486)
T ss_pred eCc----cCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCC-CeEEEEEEC
Confidence 211 0011 12257777777764 6999999999999999999999998533 677777665
No 71
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.71 E-value=2.2e-07 Score=109.87 Aligned_cols=118 Identities=13% Similarity=0.182 Sum_probs=83.3
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceE----------------EecCccc
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLF----------------HIDMRKR 548 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i----------------~idms~~ 548 (850)
.|+||+.++..+.+++.. |+.--.+||.||.|+|||.+|+.+|+.++.....-. +.|.-+.
T Consensus 17 dIIGQe~iv~~L~~aI~~---~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieI 93 (605)
T PRK05896 17 QIIGQELIKKILVNAILN---NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVEL 93 (605)
T ss_pred HhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEe
Confidence 468999999998888754 333356889999999999999999999974221000 0111111
Q ss_pred cCCCCCchh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 549 NDGVSSHSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 549 ~~~~~~~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+.+....++ .+.+.+...| |.||++||++..+...++.|+..||+-. .+++|||+++
T Consensus 94 daas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp-~~tvfIL~Tt 157 (605)
T PRK05896 94 DAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPP-KHVVFIFATT 157 (605)
T ss_pred ccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCC-CcEEEEEECC
Confidence 111111233 4556666665 5799999999999999999999999853 3789998875
No 72
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.71 E-value=5.1e-08 Score=112.25 Aligned_cols=126 Identities=14% Similarity=0.112 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCC
Q 003070 472 KLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG 551 (850)
Q Consensus 472 ~~~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~ 551 (850)
.+.+..|.+.|.+.|+||+++|+.+..++. ..+.+||.||+|+|||.+|++||..+-+.. .|..+......
T Consensus 8 ~~~i~~l~~~l~~~i~gre~vI~lll~aal------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~ftt-- 78 (498)
T PRK13531 8 AERISRLSSALEKGLYERSHAIRLCLLAAL------SGESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTRFST-- 78 (498)
T ss_pred HHHHHHHHHHHhhhccCcHHHHHHHHHHHc------cCCCEEEECCCChhHHHHHHHHHHHhcccC-cceeeeeeecC--
Confidence 457889999999999999999999988875 257899999999999999999999865432 34333222100
Q ss_pred CCCchh-----------hHHHHhhhCC---CEEEeeccccccCHHHHHHHHhhhccCccC---------ceEEEEecCC
Q 003070 552 VSSHSE-----------MLMGTLKNYE---KLVVLVEDIDLADPQFIKILADGFETENFG---------KVIFVLTKGD 607 (850)
Q Consensus 552 ~~~~~~-----------~l~e~vr~~P---~sVvlldeiekA~~~v~~~l~q~~d~G~l~---------n~Iii~Tsn~ 607 (850)
|...+| .+. ..+..| ..|||+|||.+|.+.+|+.|+++|+++.|+ -=+||++||.
T Consensus 79 p~DLfG~l~i~~~~~~g~f~-r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 79 PEEVFGPLSIQALKDEGRYQ-RLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE 156 (498)
T ss_pred cHHhcCcHHHhhhhhcCchh-hhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC
Confidence 000111 111 112222 239999999999999999999999999975 2356666773
No 73
>PRK06893 DNA replication initiation factor; Validated
Probab=98.71 E-value=1.7e-07 Score=98.99 Aligned_cols=95 Identities=15% Similarity=0.258 Sum_probs=64.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhhhCCCEEEeecccccc--CHHHH
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLA--DPQFI 584 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~~P~sVvlldeiekA--~~~v~ 584 (850)
....+|+|.||+|+|||.|+.++|..+.......+.+.++.... +...+.+.++ .+.+|+||||+.- ++..+
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~----~~~~~~~~~~--~~dlLilDDi~~~~~~~~~~ 110 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY----FSPAVLENLE--QQDLVCLDDLQAVIGNEEWE 110 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh----hhHHHHhhcc--cCCEEEEeChhhhcCChHHH
Confidence 34568999999999999999999998876655666676654321 1122223333 3579999999973 45555
Q ss_pred HHHHhhhccCccC-ceEEEEecCC
Q 003070 585 KILADGFETENFG-KVIFVLTKGD 607 (850)
Q Consensus 585 ~~l~q~~d~G~l~-n~Iii~Tsn~ 607 (850)
..|++.|+.-+-. ..|+|+|+|.
T Consensus 111 ~~l~~l~n~~~~~~~~illits~~ 134 (229)
T PRK06893 111 LAIFDLFNRIKEQGKTLLLISADC 134 (229)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCC
Confidence 5677766654332 3577888874
No 74
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.70 E-value=2.4e-07 Score=110.57 Aligned_cols=119 Identities=13% Similarity=0.197 Sum_probs=83.2
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCC------------C------------c
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGST------------D------------L 539 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~------------~------------~ 539 (850)
+.|+||+.++..+.+++. .|+-.-.+||.||.|+|||++|+.||+.++... + .
T Consensus 16 ~eivGQe~i~~~L~~~i~---~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 16 ADITAQEHITHTIQNSLR---MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred HHhcCcHHHHHHHHHHHH---cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhc
Confidence 457899999999888765 344334577999999999999999999997632 0 0
Q ss_pred eEEecCccccCCCCCchh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 540 LFHIDMRKRNDGVSSHSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 540 ~i~idms~~~~~~~~~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
-.++|..+++......++ .+.+.++.+| |.||++||+++-...-++.|+..||+-- .+++|||+++
T Consensus 93 g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp-~~tv~IL~t~ 165 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPP-PHAIFIFATT 165 (620)
T ss_pred cCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCC-CCeEEEEEeC
Confidence 011222222221112244 4556665555 5799999999999999999999999832 2688888774
No 75
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.69 E-value=2.2e-07 Score=96.69 Aligned_cols=110 Identities=9% Similarity=0.115 Sum_probs=76.0
Q ss_pred CchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhhhCC
Q 003070 488 WQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYE 567 (850)
Q Consensus 488 gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~~P 567 (850)
++.+++.++.+.+. +....+++|.||+|+|||.+|++++...+.....++.++++...... ..+.+.+.+
T Consensus 21 ~~~~~~~~l~~~~~----~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~-- 90 (226)
T TIGR03420 21 GNAELLAALRQLAA----GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD----PEVLEGLEQ-- 90 (226)
T ss_pred CcHHHHHHHHHHHh----cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH----HHHHhhccc--
Confidence 34455555554432 34467999999999999999999999988666778888887653211 223333333
Q ss_pred CEEEeeccccccCH--HHHHHHHhhhccCccCceEEEEecCC
Q 003070 568 KLVVLVEDIDLADP--QFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 568 ~sVvlldeiekA~~--~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
+.||+||||+.... ..+..|.+.++...-.+..||+|++.
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~ 132 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRA 132 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 45999999999876 34788888877643334567788763
No 76
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.69 E-value=3.6e-07 Score=101.58 Aligned_cols=207 Identities=11% Similarity=0.074 Sum_probs=138.8
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCC----------CC
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG----------VS 553 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~----------~~ 553 (850)
+.++|++.++..+.+.+.+.- +....+|+.|.+|+||+.+|++|-..-......|+.+|+....+. ..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a--~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~ 83 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLA--PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAG 83 (326)
T ss_pred CccEECCHHHHHHHHHHHHHh--CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHcccccc
Confidence 357889988888888877653 456789999999999999999998766556789999999875311 00
Q ss_pred Cchh---hHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccC----------ceEEEEecCCCchhhhhhhhccc
Q 003070 554 SHSE---MLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTKGDSSNYEERIENQDS 620 (850)
Q Consensus 554 ~~~~---~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~----------n~Iii~Tsn~~~~~~e~~~~~~~ 620 (850)
.+.+ .-.+.+..---.+++|||||...+.+|..|++.|++|.+. |+-||.||+..- .
T Consensus 84 ~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l--~-------- 153 (326)
T PRK11608 84 AFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADL--P-------- 153 (326)
T ss_pred ccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhH--H--------
Confidence 0111 0011122223468999999999999999999999999863 456666654210 0
Q ss_pred ccchhheecccCcccccchhhhhhhhccCCCCCccccccccccccccccCCCcccccccCcccccccccccCCcCccCCC
Q 003070 621 VINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGEQ 700 (850)
Q Consensus 621 ~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~~~~s~~~lDLNl~a~e~e~~~~~ 700 (850)
+.
T Consensus 154 -----------------------------------~l------------------------------------------- 155 (326)
T PRK11608 154 -----------------------------------AM------------------------------------------- 155 (326)
T ss_pred -----------------------------------HH-------------------------------------------
Confidence 00
Q ss_pred CCCCCCCCcccchhhcccCCCCCchhhhccc-ceEeccCCCCCchhHHHHHHHHHHHHHHHHHccCCceEEEeCHHHHHH
Q 003070 701 KPGELSPISSDLTRENITNPALSNGFLDLIQ-NRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEE 779 (850)
Q Consensus 701 ~~~~~~~~~sd~~~e~~~~~~~~~efLnriD-~~vvF~~l~~~~~~l~~~i~~~~~~~~~~~l~~~~~~~l~vd~~~~e~ 779 (850)
++ +..|.++|+.++. -.|...||.....++.. +...+...+.+.++.. +...++++++..
T Consensus 156 -------------~~---~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~-L~~~fl~~~~~~~~~~--~~~~~s~~al~~ 216 (326)
T PRK11608 156 -------------VA---EGKFRADLLDRLAFDVVQLPPLRERQSDIML-MAEHFAIQMCRELGLP--LFPGFTERARET 216 (326)
T ss_pred -------------HH---cCCchHHHHHhcCCCEEECCChhhhhhhHHH-HHHHHHHHHHHHhCCC--CCCCCCHHHHHH
Confidence 00 1357788888885 57788888764223433 2333444455555544 445799999999
Q ss_pred HHhccCCcch-hHHHHHHHHHH
Q 003070 780 VLIGSGFFHN-SLFEKWLKEVF 800 (850)
Q Consensus 780 l~~~~~~~~~-r~le~wie~vl 800 (850)
|.... |.|| |.|++.|+..+
T Consensus 217 L~~y~-WPGNvrEL~~vl~~a~ 237 (326)
T PRK11608 217 LLNYR-WPGNIRELKNVVERSV 237 (326)
T ss_pred HHhCC-CCcHHHHHHHHHHHHH
Confidence 98874 8874 56776666654
No 77
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.68 E-value=9.7e-08 Score=91.69 Aligned_cols=99 Identities=18% Similarity=0.177 Sum_probs=77.1
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHhhhC----CCCeEEEEecCCchHHHHHHHHHHHHhcCC--CCceEEecCcc
Q 003070 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA----KKATWFLLQGNDTIGKRRLALSIAESVFGS--TDLLFHIDMRK 547 (850)
Q Consensus 474 ~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~g----k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs--~~~~i~idms~ 547 (850)
++..|++.|++++.||.-|+..|.++|..--.. || -.|.|.||+|+||+.+|+-||+.+|.+ ...+++.=++.
T Consensus 15 ~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~~p~Kp-LVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~ 93 (127)
T PF06309_consen 15 NITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANPNPRKP-LVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIAT 93 (127)
T ss_pred CHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCCCC-EEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeeccc
Confidence 577999999999999999999999999987664 44 688899999999999999999999965 55555553333
Q ss_pred ccCCC----CCchh----hHHHHhhhCCCEEEee
Q 003070 548 RNDGV----SSHSE----MLMGTLKNYEKLVVLV 573 (850)
Q Consensus 548 ~~~~~----~~~~~----~l~e~vr~~P~sVvll 573 (850)
.+-.. ..|-. .|.+.|++-|.++++|
T Consensus 94 ~hFP~~~~v~~Yk~~L~~~I~~~v~~C~rslFIF 127 (127)
T PF06309_consen 94 HHFPHNSNVDEYKEQLKSWIRGNVSRCPRSLFIF 127 (127)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHHHhCCcCeeeC
Confidence 22111 12333 5778888899998875
No 78
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.67 E-value=9.5e-08 Score=95.81 Aligned_cols=117 Identities=16% Similarity=0.208 Sum_probs=79.7
Q ss_pred CchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceE---------EecCcc------ccCCC
Q 003070 488 WQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLF---------HIDMRK------RNDGV 552 (850)
Q Consensus 488 gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i---------~idms~------~~~~~ 552 (850)
||++++..+.+.+.. ++---.+||.||+|+||+++|+++|+.++++...-. .++... .....
T Consensus 1 gq~~~~~~L~~~~~~---~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~ 77 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS---GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDK 77 (162)
T ss_dssp S-HHHHHHHHHHHHC---TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTT
T ss_pred CcHHHHHHHHHHHHc---CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccc
Confidence 899999999888764 433345679999999999999999999999765411 111111 10011
Q ss_pred C---Cchh---hHHHHhh----hCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCCC
Q 003070 553 S---SHSE---MLMGTLK----NYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGDS 608 (850)
Q Consensus 553 ~---~~~~---~l~e~vr----~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~~ 608 (850)
. -.++ .+.+.+. ..+|.|++|||+|+.....+|.||..||+-- .|++|||+++..
T Consensus 78 ~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp-~~~~fiL~t~~~ 142 (162)
T PF13177_consen 78 KKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPP-ENTYFILITNNP 142 (162)
T ss_dssp SSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTT-TTEEEEEEES-G
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCC-CCEEEEEEECCh
Confidence 1 1234 3344433 3467799999999999999999999999976 699999999843
No 79
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.67 E-value=8.2e-08 Score=96.98 Aligned_cols=120 Identities=13% Similarity=0.154 Sum_probs=87.2
Q ss_pred CCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC----------CCCCc
Q 003070 486 VPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND----------GVSSH 555 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~----------~~~~~ 555 (850)
++|++.++..+-+.+.+.- ..+.-+|+.|++|+||+.+|++|-+.-.-....||.+||+.+.+ ....|
T Consensus 1 liG~s~~m~~~~~~~~~~a--~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~ 78 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA--SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAF 78 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT--TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSS
T ss_pred CEeCCHHHHHHHHHHHHHh--CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccc
Confidence 4678888888777776543 34578889999999999999999997777788999999987631 11111
Q ss_pred hh---hHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccC----------ceEEEEecCC
Q 003070 556 SE---MLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTKGD 607 (850)
Q Consensus 556 ~~---~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~----------n~Iii~Tsn~ 607 (850)
.+ .-...+.+--.-.++|||||...+.+|..|+++|++|.|. |+-||.||+.
T Consensus 79 ~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 79 TGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp TTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred cccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 11 1124445556679999999999999999999999999873 8889998873
No 80
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.67 E-value=4.4e-07 Score=107.54 Aligned_cols=120 Identities=11% Similarity=0.151 Sum_probs=84.5
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCc----------------eEEecCcc
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDL----------------LFHIDMRK 547 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~----------------~i~idms~ 547 (850)
+.|+||+.++..+-.+|.. |+.---+||.||.|+|||.+|++||+.++..... ...+|+-+
T Consensus 16 ~diiGqe~iv~~L~~~i~~---~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~ 92 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIES---NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIE 92 (563)
T ss_pred HHccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEE
Confidence 3578999999998888864 4444568999999999999999999999864210 01122222
Q ss_pred ccCCCCCchhhH---HHHhhh----CCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 548 RNDGVSSHSEML---MGTLKN----YEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 548 ~~~~~~~~~~~l---~e~vr~----~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.+......++.+ .+.+.. .+|.|+++||++.-....++.|+..+|+-- .+++||++++.
T Consensus 93 idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp-~~~vfI~~tte 158 (563)
T PRK06647 93 IDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPP-PYIVFIFATTE 158 (563)
T ss_pred ecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCC-CCEEEEEecCC
Confidence 222211234533 333343 456899999999999999999999999732 38899997753
No 81
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.65 E-value=1.3e-07 Score=104.06 Aligned_cols=117 Identities=12% Similarity=0.170 Sum_probs=83.9
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCC--CceEEecCccccCC-------CCCc
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGST--DLLFHIDMRKRNDG-------VSSH 555 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~--~~~i~idms~~~~~-------~~~~ 555 (850)
.++||++++..+..++.. ++ ...++|.||+|+|||.+|+++|+.+++.. ..++.++++.+... .+.+
T Consensus 16 ~~~g~~~~~~~L~~~~~~---~~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (337)
T PRK12402 16 DILGQDEVVERLSRAVDS---PN-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRF 91 (337)
T ss_pred HhcCCHHHHHHHHHHHhC---CC-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcch
Confidence 457899998888877652 32 23688999999999999999999998763 46788888764211 1111
Q ss_pred --------------hhhHHHHh----hh----CCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 556 --------------SEMLMGTL----KN----YEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 556 --------------~~~l~e~v----r~----~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.+.+.+.+ +. .++.||+|||++...+..++.|...++... .++.||+|++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~-~~~~~Il~~~ 163 (337)
T PRK12402 92 AHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS-RTCRFIIATR 163 (337)
T ss_pred hhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc-CCCeEEEEeC
Confidence 12222222 11 346799999999999999999999998743 3577787776
No 82
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=2.3e-07 Score=105.59 Aligned_cols=123 Identities=15% Similarity=0.151 Sum_probs=85.3
Q ss_pred ccCCCchHHHHHHHHHHHHhhhC------CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCc-eE--------------E
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSA------KKATWFLLQGNDTIGKRRLALSIAESVFGSTDL-LF--------------H 542 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~g------k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~-~i--------------~ 542 (850)
+.|+||++++..+-++|...|.+ +..-.+||.||+|+|||.+|+++|+.++..... -- +
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 46899999999999999976632 233567899999999999999999988764321 00 0
Q ss_pred ecCcccc-CCCCCchh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 543 IDMRKRN-DGVSSHSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 543 idms~~~-~~~~~~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
-|..... ++..-.++ .|.+.+...| |.|++|||+|+-.+..+|.|+..||+..- +++|||+++.
T Consensus 85 pD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~-~~~fIL~a~~ 156 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPP-RTVWLLCAPS 156 (394)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCC-CCeEEEEECC
Confidence 0000000 00011233 3555555555 57999999999999999999999998643 5677776663
No 83
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.63 E-value=9.9e-07 Score=103.70 Aligned_cols=111 Identities=12% Similarity=0.120 Sum_probs=85.2
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCC-----CCch-h
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGV-----SSHS-E 557 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~-----~~~~-~ 557 (850)
..++||..++..+.+.|.+. ......+|+.|++|+||+.+|++|-..-......|+.+||..+.+.. -|+. +
T Consensus 187 ~~iig~s~~~~~~~~~i~~~--a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g 264 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVV--AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKG 264 (509)
T ss_pred CceeecCHHHHHHHHHHHHH--hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCcccc
Confidence 46999999999999999874 34577899999999999999999999887778899999998752200 0000 0
Q ss_pred hHHHHh-------hhCCCEEEeeccccccCHHHHHHHHhhhccCcc
Q 003070 558 MLMGTL-------KNYEKLVVLVEDIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 558 ~l~e~v-------r~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l 596 (850)
.++++. ..--...++|||||...+.+|..|++++++|.+
T Consensus 265 ~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~ 310 (509)
T PRK05022 265 AFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEI 310 (509)
T ss_pred ccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCE
Confidence 111111 112235799999999999999999999999987
No 84
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.63 E-value=8.2e-08 Score=106.57 Aligned_cols=120 Identities=19% Similarity=0.273 Sum_probs=93.6
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC---
Q 003070 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND--- 550 (850)
Q Consensus 474 ~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~--- 550 (850)
.+..+...+.+.++|+++++..+-.++.. .+-+||.||+|+|||.+|+++|+.+- -.|+++.+.....
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~~------~~~vll~G~PG~gKT~la~~lA~~l~---~~~~~i~~t~~l~p~d 84 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALLA------GGHVLLEGPPGVGKTLLARALARALG---LPFVRIQCTPDLLPSD 84 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHHc------CCCEEEECCCCccHHHHHHHHHHHhC---CCeEEEecCCCCCHHH
Confidence 46677888888899999998888777663 34678999999999999999999995 6788887765311
Q ss_pred --C------C---CCc----hhhHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccC-----------ceEEEEe
Q 003070 551 --G------V---SSH----SEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG-----------KVIFVLT 604 (850)
Q Consensus 551 --~------~---~~~----~~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~-----------n~Iii~T 604 (850)
+ . .+. -|-|..+++ .|+|+|||.+|+|.+++.|+++|+++++. --++|.|
T Consensus 85 ~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT 160 (329)
T COG0714 85 LLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIAT 160 (329)
T ss_pred hcCchhHhhhhccCCeEEEecCCcccccc----eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEc
Confidence 0 0 111 123444444 79999999999999999999999998753 4588899
Q ss_pred cC
Q 003070 605 KG 606 (850)
Q Consensus 605 sn 606 (850)
+|
T Consensus 161 ~N 162 (329)
T COG0714 161 QN 162 (329)
T ss_pred cC
Confidence 99
No 85
>PRK04195 replication factor C large subunit; Provisional
Probab=98.63 E-value=5.4e-07 Score=105.25 Aligned_cols=114 Identities=16% Similarity=0.151 Sum_probs=82.4
Q ss_pred CCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchh-hHHHHhh
Q 003070 486 VPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSE-MLMGTLK 564 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~-~l~e~vr 564 (850)
|+||++++..+.+.+.....|++.-.+||.||+|+|||.+|++||+.+- -.++.++.+.+... ..+. .+.++..
T Consensus 16 lvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~---~~~ielnasd~r~~--~~i~~~i~~~~~ 90 (482)
T PRK04195 16 VVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG---WEVIELNASDQRTA--DVIERVAGEAAT 90 (482)
T ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEcccccccH--HHHHHHHHHhhc
Confidence 6899999999999888777777777899999999999999999999882 45677776653210 0111 1222211
Q ss_pred h-----CCCEEEeeccccccCH----HHHHHHHhhhccCccCceEEEEecCC
Q 003070 565 N-----YEKLVVLVEDIDLADP----QFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 565 ~-----~P~sVvlldeiekA~~----~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
. .++.||+|||+|.-+. ..++.|++.++.. +.-|||++|.
T Consensus 91 ~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~---~~~iIli~n~ 139 (482)
T PRK04195 91 SGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKA---KQPIILTAND 139 (482)
T ss_pred cCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcC---CCCEEEeccC
Confidence 1 4678999999997543 6778888888854 3456777774
No 86
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.60 E-value=6.7e-07 Score=94.88 Aligned_cols=89 Identities=11% Similarity=0.183 Sum_probs=58.8
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhhhCCCEEEeecccccc--CH----H
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLA--DP----Q 582 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~~P~sVvlldeiekA--~~----~ 582 (850)
..+++|.||.|+|||.|+.+++..+.......+.+.+.... .+...+-+.+++ +.+|+||||+.- ++ .
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~----~~~~~~~~~~~~--~dlliiDdi~~~~~~~~~~~~ 118 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRA----WFVPEVLEGMEQ--LSLVCIDNIECIAGDELWEMA 118 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHh----hhhHHHHHHhhh--CCEEEEeChhhhcCCHHHHHH
Confidence 35899999999999999999998876544455555554432 122233334433 469999999864 23 3
Q ss_pred HHHHHHhhhccCccCceEEEEecC
Q 003070 583 FIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 583 v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
++.++...++.|+. -||+||+
T Consensus 119 lf~l~n~~~e~g~~---~li~ts~ 139 (235)
T PRK08084 119 IFDLYNRILESGRT---RLLITGD 139 (235)
T ss_pred HHHHHHHHHHcCCC---eEEEeCC
Confidence 45666666666653 4677776
No 87
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.60 E-value=8.3e-07 Score=106.48 Aligned_cols=107 Identities=16% Similarity=0.163 Sum_probs=74.5
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhc-------CCCCceEEecCccccCCC----C
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVF-------GSTDLLFHIDMRKRNDGV----S 553 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lf-------gs~~~~i~idms~~~~~~----~ 553 (850)
.++||+.++..+.+.+. +.. ...++|.||+|+|||++|+.++.... .....|+.+|.......+ .
T Consensus 155 ~iiGqs~~~~~l~~~ia---~~~-~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 155 EIVGQERAIKALLAKVA---SPF-PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred hceeCcHHHHHHHHHHh---cCC-CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 46899999998776653 222 34688999999999999999998763 234578999876531100 0
Q ss_pred CchhhH---------------------HHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCc
Q 003070 554 SHSEML---------------------MGTLKNYEKLVVLVEDIDLADPQFIKILADGFETEN 595 (850)
Q Consensus 554 ~~~~~l---------------------~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~ 595 (850)
...+.+ ...+.+-...|+||||++..++..|..|++.|++|+
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~ 293 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKR 293 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCe
Confidence 001100 001112234599999999999999999999999986
No 88
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=4.4e-07 Score=102.35 Aligned_cols=119 Identities=14% Similarity=0.174 Sum_probs=81.6
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC-c-e------EEecCcc---------
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD-L-L------FHIDMRK--------- 547 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~-~-~------i~idms~--------- 547 (850)
.|+||++|+..+.+++...|- +-+ +||.||.|+||+.+|.++|+.++.... . - ..++...
T Consensus 20 ~iiGq~~~~~~L~~~~~~~rl--~HA-~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~ 96 (365)
T PRK07471 20 ALFGHAAAEAALLDAYRSGRL--HHA-WLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA 96 (365)
T ss_pred hccChHHHHHHHHHHHHcCCC--Cce-EEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH
Confidence 579999999999998876432 334 559999999999999999999986431 0 0 0011000
Q ss_pred -------------ccCCC----CC-chhhH---HHHhh----hCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEE
Q 003070 548 -------------RNDGV----SS-HSEML---MGTLK----NYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFV 602 (850)
Q Consensus 548 -------------~~~~~----~~-~~~~l---~e~vr----~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii 602 (850)
+++.. .. .++.+ .+.+. ...+.||+|||+|..++..+|.|+..+|+-. .+++||
T Consensus 97 ~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp-~~~~~I 175 (365)
T PRK07471 97 AGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP-ARSLFL 175 (365)
T ss_pred ccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC-CCeEEE
Confidence 00100 00 23433 23333 2456899999999999999999999999732 478888
Q ss_pred EecCC
Q 003070 603 LTKGD 607 (850)
Q Consensus 603 ~Tsn~ 607 (850)
|+|+.
T Consensus 176 L~t~~ 180 (365)
T PRK07471 176 LVSHA 180 (365)
T ss_pred EEECC
Confidence 88874
No 89
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=3e-07 Score=104.87 Aligned_cols=119 Identities=12% Similarity=0.164 Sum_probs=82.3
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC------------------------c
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD------------------------L 539 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~------------------------~ 539 (850)
+.|+||+.++..+..++.. |+---.+||.||+|+|||++|+++|+.++.... .
T Consensus 16 ~eiiGq~~~~~~L~~~~~~---~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRM---GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred hhccChHHHHHHHHHHHHh---CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhc
Confidence 3688999999988777653 443345779999999999999999999986320 0
Q ss_pred eEEecCccccCCCCCchh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 540 LFHIDMRKRNDGVSSHSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 540 ~i~idms~~~~~~~~~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
...+|..+++.....-++ .+.+.+..+| |.||++||+++-+..-++.|+..+|+-.- .++||++++
T Consensus 93 ~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~-~t~~Il~t~ 165 (397)
T PRK14955 93 GTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPP-HAIFIFATT 165 (397)
T ss_pred CCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCC-CeEEEEEeC
Confidence 001122222211111134 4556666555 67999999999999999999999997433 677777665
No 90
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.2e-06 Score=95.63 Aligned_cols=117 Identities=11% Similarity=0.102 Sum_probs=84.3
Q ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHhh--hC-----CC---CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecC
Q 003070 476 SDLYKVLQENVPWQFDSIHSIVEVLVECK--SA-----KK---ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDM 545 (850)
Q Consensus 476 ~~L~~~L~~~V~gQ~eai~~Ia~av~~~r--~g-----k~---~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idm 545 (850)
+.+...|.+.|+||++|=.+||=|++-.. .- |. ---.|+.||||||||++|+.||++. ...||.+--
T Consensus 7 reIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~---~aPFiKVEA 83 (444)
T COG1220 7 REIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA---GAPFIKVEA 83 (444)
T ss_pred HHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHh---CCCeEEEEe
Confidence 57888999999999999999999998432 21 11 1467899999999999999999998 688999998
Q ss_pred ccccCCCCCchh------------------------------------hHHHHhhhCCCE-EEeeccccccCHHHHHHHH
Q 003070 546 RKRNDGVSSHSE------------------------------------MLMGTLKNYEKL-VVLVEDIDLADPQFIKILA 588 (850)
Q Consensus 546 s~~~~~~~~~~~------------------------------------~l~e~vr~~P~s-VvlldeiekA~~~v~~~l~ 588 (850)
.+|-+ -|||| ++.++|--.+.- -=.-++ +++.+..+..+.
T Consensus 84 TKfTE--VGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~-~~~~~~~r~~~r 160 (444)
T COG1220 84 TKFTE--VGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSEN-KQESSATREKFR 160 (444)
T ss_pred eeeee--cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcc-cccchHHHHHHH
Confidence 88854 35654 233333222211 112222 447788888888
Q ss_pred hhhccCccCc
Q 003070 589 DGFETENFGK 598 (850)
Q Consensus 589 q~~d~G~l~n 598 (850)
+-+..|.|-+
T Consensus 161 kkLr~GeLdd 170 (444)
T COG1220 161 KKLREGELDD 170 (444)
T ss_pred HHHHcCCCCc
Confidence 8889998853
No 91
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.55 E-value=2.4e-06 Score=103.93 Aligned_cols=110 Identities=11% Similarity=0.170 Sum_probs=82.7
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCC----------CCC
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG----------VSS 554 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~----------~~~ 554 (850)
.++|+..++..+.+.+...- +.+..+|+.|++|+||+.+|++|...-......|+.+|+...... ...
T Consensus 377 ~liG~S~~~~~~~~~~~~~a--~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~ 454 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVA--QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGA 454 (686)
T ss_pred ceeecCHHHHHHHHHHHHHh--CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCccccc
Confidence 58899998888887777542 446789999999999999999999887767789999999864210 000
Q ss_pred chh---hHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCcc
Q 003070 555 HSE---MLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 555 ~~~---~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l 596 (850)
+.+ .-...+...-..+++||||+...+.+|..|++.|++|.|
T Consensus 455 ~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~ 499 (686)
T PRK15429 455 FTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEF 499 (686)
T ss_pred ccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCE
Confidence 111 011112222347999999999999999999999999986
No 92
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.55 E-value=1e-06 Score=106.18 Aligned_cols=121 Identities=15% Similarity=0.190 Sum_probs=89.0
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCC-----CCCch--
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG-----VSSHS-- 556 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~-----~~~~~-- 556 (850)
..++|++.++..+.+.+... .+...++|+.|++|+||+.+|++|-.........||.+||....+. --||.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~--a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~ 402 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQA--AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRT 402 (638)
T ss_pred cceEECCHHHHHHHHHHHHH--hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCc
Confidence 45788898888777766543 3456789999999999999999999988777889999999865210 00111
Q ss_pred ---hhHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccC----------ceEEEEecC
Q 003070 557 ---EMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTKG 606 (850)
Q Consensus 557 ---~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~----------n~Iii~Tsn 606 (850)
+.....+..-...+|+||||+...+.+|..|++++++|.+. ++-||.||+
T Consensus 403 ~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~ 465 (638)
T PRK11388 403 DSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTT 465 (638)
T ss_pred CccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEecc
Confidence 00001122234578999999999999999999999999863 566777665
No 93
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.53 E-value=1.8e-06 Score=100.81 Aligned_cols=90 Identities=19% Similarity=0.189 Sum_probs=60.5
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchh-------hHHHHhhhCCCEEEeeccccccCH-
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSE-------MLMGTLKNYEKLVVLVEDIDLADP- 581 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~-------~l~e~vr~~P~sVvlldeiekA~~- 581 (850)
--+||.||+|+|||.+|+++|..+ .-.|+++|++.... +|+| .+....+...-+||||||||++-.
T Consensus 260 kGILL~GPpGTGKTllAkaiA~e~---~~~~~~l~~~~l~~---~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~ 333 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAKAIANDW---QLPLLRLDVGKLFG---GIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSN 333 (489)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCCEEEEEhHHhcc---cccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhcc
Confidence 457799999999999999999986 46899999986422 2333 344444566668999999997632
Q ss_pred -----------HHHHHHHhhhccCccCceEEEEecC
Q 003070 582 -----------QFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 582 -----------~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.+++.|++.|++. =.+.+||+|+|
T Consensus 334 ~~~~~d~~~~~rvl~~lL~~l~~~-~~~V~vIaTTN 368 (489)
T CHL00195 334 SESKGDSGTTNRVLATFITWLSEK-KSPVFVVATAN 368 (489)
T ss_pred ccCCCCchHHHHHHHHHHHHHhcC-CCceEEEEecC
Confidence 2334444444432 12455666665
No 94
>PRK08727 hypothetical protein; Validated
Probab=98.53 E-value=2.1e-06 Score=90.93 Aligned_cols=95 Identities=15% Similarity=0.205 Sum_probs=64.3
Q ss_pred CCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhhh-CCCEEEeecccccc--CHH
Q 003070 506 AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKN-YEKLVVLVEDIDLA--DPQ 582 (850)
Q Consensus 506 gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~-~P~sVvlldeiekA--~~~ 582 (850)
|+..-|++|.||+|+|||.|+.+++..+.......+.+.+.++. +.+.+.+.+ ..+.+|+||||+.. ++.
T Consensus 38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~-------~~~~~~~~~l~~~dlLiIDDi~~l~~~~~ 110 (233)
T PRK08727 38 GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA-------GRLRDALEALEGRSLVALDGLESIAGQRE 110 (233)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh-------hhHHHHHHHHhcCCEEEEeCcccccCChH
Confidence 44557999999999999999999998887666666777765532 222232221 33569999999975 344
Q ss_pred HHHHHHhhhccCccCceEEEEecCC
Q 003070 583 FIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 583 v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
-+..|++.++..+=+..-+|+|||.
T Consensus 111 ~~~~lf~l~n~~~~~~~~vI~ts~~ 135 (233)
T PRK08727 111 DEVALFDFHNRARAAGITLLYTARQ 135 (233)
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCC
Confidence 4556666666543334447888874
No 95
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.50 E-value=3.1e-06 Score=99.86 Aligned_cols=111 Identities=15% Similarity=0.142 Sum_probs=81.6
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC----------CCCC
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND----------GVSS 554 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~----------~~~~ 554 (850)
.++|++.++..+.+.+.+. .+.+..+|+.|.+|+||+.+|+++-..-......|+.+|++...+ .+..
T Consensus 205 ~~ig~s~~~~~~~~~~~~~--A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~ 282 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKL--AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGA 282 (520)
T ss_pred ceeECCHHHHHHHHHHHHH--hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCC
Confidence 6899998888777666543 345677999999999999999999877777778999999987521 0101
Q ss_pred chhh---HHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccC
Q 003070 555 HSEM---LMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG 597 (850)
Q Consensus 555 ~~~~---l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~ 597 (850)
|.+. -.+.+..--...|+||||+...+.+|..|++.+++|.|+
T Consensus 283 ~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~ 328 (520)
T PRK10820 283 YPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFR 328 (520)
T ss_pred cCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcc
Confidence 1110 001122222468999999999999999999999999874
No 96
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=7.5e-07 Score=98.25 Aligned_cols=119 Identities=16% Similarity=0.164 Sum_probs=85.0
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcccc--CCCCCchhhHHH
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRN--DGVSSHSEMLMG 561 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~--~~~~~~~~~l~e 561 (850)
..|+||+.++..+..++. .|+----+||.||.|+|||.+|+++|+.+++....-.+.|+-... ++..-.++.+-+
T Consensus 4 ~~i~g~~~~~~~l~~~~~---~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~ 80 (313)
T PRK05564 4 HTIIGHENIKNRIKNSII---KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRN 80 (313)
T ss_pred hhccCcHHHHHHHHHHHH---cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHH
Confidence 457899999999988875 344444677999999999999999999987643221222332211 111122454443
Q ss_pred H---hhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 562 T---LKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 562 ~---vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
. +...| |.||++|++|+-+...+|.|+..+|+= -.+|+|||+++
T Consensus 81 ~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEep-p~~t~~il~~~ 131 (313)
T PRK05564 81 IIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP-PKGVFIILLCE 131 (313)
T ss_pred HHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCC-CCCeEEEEEeC
Confidence 3 33555 569999999999999999999999973 35899999886
No 97
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.48 E-value=1.3e-06 Score=101.99 Aligned_cols=166 Identities=9% Similarity=0.067 Sum_probs=107.6
Q ss_pred CcHHHHHHHHHHHh-------------cCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeeccccccc
Q 003070 70 VSKEDIKLVFEVFL-------------RKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLR 136 (850)
Q Consensus 70 gRdeeirrVieIL~-------------Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~ 136 (850)
|.++.++.+.+.+. -+..++.+|.|+||+|||.+++.+|..+...-.-..-....++.+.-+. +-
T Consensus 186 Gl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e--Ll 263 (512)
T TIGR03689 186 GLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE--LL 263 (512)
T ss_pred ChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh--hc
Confidence 67888877777653 1246789999999999999999999887543111111122334433332 23
Q ss_pred ccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCC
Q 003070 137 FMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASS 216 (850)
Q Consensus 137 ~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~ar 216 (850)
....|+.|.+++.+...++..+..+.++||||||++.++....... + .+.-..++..+-+.|...- ..
T Consensus 264 ~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~-----s-----~d~e~~il~~LL~~LDgl~--~~ 331 (512)
T TIGR03689 264 NKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV-----S-----SDVETTVVPQLLSELDGVE--SL 331 (512)
T ss_pred ccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc-----c-----chHHHHHHHHHHHHhcccc--cC
Confidence 4457899999999888877643345689999999999987653211 0 1122334455555554321 34
Q ss_pred CeEEEEecccHHHHHhhhhcCCcccc--cccceeeecCCCC
Q 003070 217 TRVWLMATASYQTYMKCQMRQPPLEI--QWALQAVSIPSGG 255 (850)
Q Consensus 217 G~lwlIGatT~eeY~K~iekdPaLEr--~W~LQ~V~Vps~~ 255 (850)
+.+-+||||...+. -||||-| ||+.. +.+|.|+
T Consensus 332 ~~ViVI~ATN~~d~-----LDpALlRpGRfD~~-I~~~~Pd 366 (512)
T TIGR03689 332 DNVIVIGASNREDM-----IDPAILRPGRLDVK-IRIERPD 366 (512)
T ss_pred CceEEEeccCChhh-----CCHhhcCccccceE-EEeCCCC
Confidence 67999999977553 4899999 76643 6776666
No 98
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.48 E-value=6e-07 Score=98.05 Aligned_cols=115 Identities=13% Similarity=0.174 Sum_probs=81.9
Q ss_pred CCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC--ceEEecCccccCCCCCch-hhHHHH
Q 003070 486 VPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD--LLFHIDMRKRNDGVSSHS-EMLMGT 562 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~--~~i~idms~~~~~~~~~~-~~l~e~ 562 (850)
++||++++..+...+.. +.. .-++|.||.|+|||.+|++++..+++... .++.++.+... ....+ +.+.+.
T Consensus 19 ~~g~~~~~~~l~~~i~~---~~~-~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~i~~~ 92 (319)
T PRK00440 19 IVGQEEIVERLKSYVKE---KNM-PHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER--GIDVIRNKIKEF 92 (319)
T ss_pred hcCcHHHHHHHHHHHhC---CCC-CeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc--chHHHHHHHHHH
Confidence 56999999888887753 322 23699999999999999999999988653 34555433221 11111 234444
Q ss_pred hhhC-----CCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 563 LKNY-----EKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 563 vr~~-----P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.+.. ++.||++||++......++.|++.++... .+++||+++|.
T Consensus 93 ~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~-~~~~lIl~~~~ 141 (319)
T PRK00440 93 ARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS-QNTRFILSCNY 141 (319)
T ss_pred HhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC-CCCeEEEEeCC
Confidence 4433 45699999999999999999999998754 36888888873
No 99
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.45 E-value=8.2e-07 Score=96.98 Aligned_cols=118 Identities=15% Similarity=0.184 Sum_probs=80.8
Q ss_pred CCCchHHHHHHHHHHHHhhhCCCCeE-EEEecCCchHHHHHHHHHHHHhcCCC---------------------CceEEe
Q 003070 486 VPWQFDSIHSIVEVLVECKSAKKATW-FLLQGNDTIGKRRLALSIAESVFGST---------------------DLLFHI 543 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~gk~~~~-~lf~Gp~gvGKt~lA~~LA~~lfgs~---------------------~~~i~i 543 (850)
+.++++++..+-..+.... .... +||.||+|+|||.+|.+||+.+|+.. ..++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~---~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel 79 (325)
T COG0470 3 LVPWQEAVKRLLVQALESG---RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLEL 79 (325)
T ss_pred cccchhHHHHHHHHHHhcC---CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEe
Confidence 3444545444444443222 2234 88999999999999999999999876 455555
Q ss_pred cCccccCCC--CCchhhHHHHhhh----CCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 544 DMRKRNDGV--SSHSEMLMGTLKN----YEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 544 dms~~~~~~--~~~~~~l~e~vr~----~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
+-+...... ...+..+.+.... .++-||++||+|.-+.+.+|.|+..+|.-.- |+.|||+||.
T Consensus 80 ~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~-~~~~il~~n~ 148 (325)
T COG0470 80 NPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPK-NTRFILITND 148 (325)
T ss_pred cccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCC-CeEEEEEcCC
Confidence 544321110 0012234444433 4589999999999999999999999998544 8999999993
No 100
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.45 E-value=3.4e-06 Score=97.74 Aligned_cols=120 Identities=10% Similarity=0.156 Sum_probs=84.8
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC--------C-CCC-
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND--------G-VSS- 554 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~--------~-~~~- 554 (850)
.++|...++..+.+.+.. ..+....+++.|.+|+||+.+|++|....+.....|+.+||+...+ + ..|
T Consensus 139 ~lig~s~~~~~l~~~~~~--~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~ 216 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGR--LSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGA 216 (469)
T ss_pred cceecCHHHHHHHHHHHH--HhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCC
Confidence 356777777766666643 2244678999999999999999999999888889999999986521 0 011
Q ss_pred chhh---HHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccC----------ceEEEEecC
Q 003070 555 HSEM---LMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTKG 606 (850)
Q Consensus 555 ~~~~---l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~----------n~Iii~Tsn 606 (850)
|.+. -...+.......+||||||...+.+|..|++.+++|.+. |+-||+||+
T Consensus 217 ~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~ 281 (469)
T PRK10923 217 FTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATH 281 (469)
T ss_pred CCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCC
Confidence 1110 001122223457899999999999999999999999863 455666554
No 101
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.45 E-value=5.9e-06 Score=86.62 Aligned_cols=90 Identities=13% Similarity=0.088 Sum_probs=67.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhhhCCCEEEeeccccccCHHHHHH
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKI 586 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~~P~sVvlldeiekA~~~v~~~ 586 (850)
....+++|.||.|+|||.||++++..++.....++.+++..... .+ ... ..+.+|++|||+..++..+..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~-------~~--~~~-~~~~~liiDdi~~l~~~~~~~ 109 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL-------AF--DFD-PEAELYAVDDVERLDDAQQIA 109 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH-------HH--hhc-ccCCEEEEeChhhcCchHHHH
Confidence 34568999999999999999999999988778888888765321 11 011 235699999999999889999
Q ss_pred HHhhhccCccC-ceEEEEecC
Q 003070 587 LADGFETENFG-KVIFVLTKG 606 (850)
Q Consensus 587 l~q~~d~G~l~-n~Iii~Tsn 606 (850)
|++.++.-+-. ..+||+|++
T Consensus 110 L~~~~~~~~~~~~~~vl~~~~ 130 (227)
T PRK08903 110 LFNLFNRVRAHGQGALLVAGP 130 (227)
T ss_pred HHHHHHHHHHcCCcEEEEeCC
Confidence 99988764433 335666654
No 102
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=7e-07 Score=107.00 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=82.8
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC-----------------------ceE
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD-----------------------LLF 541 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~-----------------------~~i 541 (850)
.|+||++++..+..++...| -.--+||.||.|+|||.+|++||+.++.... .++
T Consensus 17 ~liGq~~i~~~L~~~l~~~r---l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ 93 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNR---IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVI 93 (620)
T ss_pred hccChHHHHHHHHHHHHcCC---CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEE
Confidence 57899999999888887533 2235789999999999999999999987421 112
Q ss_pred EecCccccCCCCCchh---hHHHHhhhC----CCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 542 HIDMRKRNDGVSSHSE---MLMGTLKNY----EKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 542 ~idms~~~~~~~~~~~---~l~e~vr~~----P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.+|- .....++ .+.+.++.. +|.||+|||+|+-....++.|+..||+- -.+++|||+++.
T Consensus 94 ei~~-----~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEeP-p~~tvfIL~t~~ 160 (620)
T PRK14948 94 EIDA-----ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEP-PPRVVFVLATTD 160 (620)
T ss_pred EEec-----cccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcC-CcCeEEEEEeCC
Confidence 2211 1112233 333444444 5789999999999999999999999973 347899998874
No 103
>PRK05642 DNA replication initiation factor; Validated
Probab=98.44 E-value=1.8e-06 Score=91.60 Aligned_cols=92 Identities=15% Similarity=0.197 Sum_probs=63.3
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhhhCCCEEEeecccccc--CHHHHHHH
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLA--DPQFIKIL 587 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~~P~sVvlldeiekA--~~~v~~~l 587 (850)
..+++.||+|+|||.|+.+++..+.......+.+++.++... ...+-+.+++ +.++++|||+.- .+..+..|
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~----~~~~~~~~~~--~d~LiiDDi~~~~~~~~~~~~L 119 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR----GPELLDNLEQ--YELVCLDDLDVIAGKADWEEAL 119 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh----hHHHHHhhhh--CCEEEEechhhhcCChHHHHHH
Confidence 568999999999999999999877655567778877664321 2334444553 368999999743 35556667
Q ss_pred HhhhccCccCceEEEEecCC
Q 003070 588 ADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 588 ~q~~d~G~l~n~Iii~Tsn~ 607 (850)
+++++.=+-.+..+|+|++.
T Consensus 120 f~l~n~~~~~g~~ilits~~ 139 (234)
T PRK05642 120 FHLFNRLRDSGRRLLLAASK 139 (234)
T ss_pred HHHHHHHHhcCCEEEEeCCC
Confidence 77665422234668888863
No 104
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.44 E-value=4e-07 Score=84.45 Aligned_cols=98 Identities=16% Similarity=0.123 Sum_probs=71.9
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCC--------------CCC----chhhHHHHhhhCCCEEE
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG--------------VSS----HSEMLMGTLKNYEKLVV 571 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~--------------~~~----~~~~l~e~vr~~P~sVv 571 (850)
.-++|.||+|+|||.++++||..++.....++.++++..... ... ....+.+.+++.++.||
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 357899999999999999999999876657888888754210 011 12356666777778999
Q ss_pred eeccccccCHHHHHHHHhh-------hccCccCceEEEEecCC
Q 003070 572 LVEDIDLADPQFIKILADG-------FETENFGKVIFVLTKGD 607 (850)
Q Consensus 572 lldeiekA~~~v~~~l~q~-------~d~G~l~n~Iii~Tsn~ 607 (850)
++||+.............. .......+..+|+|+|.
T Consensus 83 iiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 83 ILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 9999999877766665543 33334558888888884
No 105
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.44 E-value=1.4e-06 Score=82.03 Aligned_cols=122 Identities=11% Similarity=0.138 Sum_probs=87.3
Q ss_pred EEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeEEEecc
Q 003070 91 VIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGD 170 (850)
Q Consensus 91 VLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdE 170 (850)
+|.|+||+|||.+++.+|+.+ +.+++.++.+.+ .+...++.+.++..+...++.. ....||||||
T Consensus 2 ll~G~~G~GKT~l~~~la~~l----------~~~~~~i~~~~~--~~~~~~~~~~~i~~~~~~~~~~---~~~~vl~iDe 66 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL----------GFPFIEIDGSEL--ISSYAGDSEQKIRDFFKKAKKS---AKPCVLFIDE 66 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT----------TSEEEEEETTHH--HTSSTTHHHHHHHHHHHHHHHT---STSEEEEEET
T ss_pred EEECcCCCCeeHHHHHHHhhc----------cccccccccccc--cccccccccccccccccccccc---ccceeeeecc
Confidence 789999999999999999987 478999998755 3556889999999999998862 2379999999
Q ss_pred hhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCccc-ccc
Q 003070 171 LKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLE-IQW 244 (850)
Q Consensus 171 Lh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLE-r~W 244 (850)
++.+.+...... ......++..+.+++.... ...+++.+||+|+. + -.-+|+|. .||
T Consensus 67 ~d~l~~~~~~~~-----------~~~~~~~~~~L~~~l~~~~-~~~~~~~vI~ttn~--~---~~i~~~l~~~rf 124 (132)
T PF00004_consen 67 IDKLFPKSQPSS-----------SSFEQRLLNQLLSLLDNPS-SKNSRVIVIATTNS--P---DKIDPALLRSRF 124 (132)
T ss_dssp GGGTSHHCSTSS-----------SHHHHHHHHHHHHHHHTTT-TTSSSEEEEEEESS--G---GGSCHHHHSTTS
T ss_pred chhccccccccc-----------ccccccccceeeecccccc-cccccceeEEeeCC--h---hhCCHhHHhCCC
Confidence 999998761110 1233444455556665432 12357999999876 1 13456666 544
No 106
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=1.8e-06 Score=95.68 Aligned_cols=119 Identities=18% Similarity=0.243 Sum_probs=86.1
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC---------------ceEEecCccc
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD---------------LLFHIDMRKR 548 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~---------------~~i~idms~~ 548 (850)
+.|+||++++..+.+++...|- ---+||.||.|+||+.+|+++|+.+++... .++.+.-...
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl---~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~ 80 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRI---APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQ 80 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCC---CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccc
Confidence 5789999999999999875432 346679999999999999999999997641 0111111000
Q ss_pred cCC-----------------CCC-chh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEE
Q 003070 549 NDG-----------------VSS-HSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVL 603 (850)
Q Consensus 549 ~~~-----------------~~~-~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~ 603 (850)
.++ ++. .++ .|.+.+...| |.||++|++|+.+....|.|+..||+=- +++|||
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp--~~~fIL 158 (314)
T PRK07399 81 HQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG--NGTLIL 158 (314)
T ss_pred ccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC--CCeEEE
Confidence 000 001 123 4666666655 5799999999999999999999999865 788999
Q ss_pred ecCC
Q 003070 604 TKGD 607 (850)
Q Consensus 604 Tsn~ 607 (850)
+++.
T Consensus 159 i~~~ 162 (314)
T PRK07399 159 IAPS 162 (314)
T ss_pred EECC
Confidence 8873
No 107
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=1.3e-06 Score=104.33 Aligned_cols=115 Identities=16% Similarity=0.270 Sum_probs=82.9
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC----------------------ceE
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD----------------------LLF 541 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~----------------------~~i 541 (850)
+.|+||++++..+-.++.. |+-.-.+||.||.|+|||.+|+.||+.++.... .++
T Consensus 16 ~eiiGq~~~~~~L~~~i~~---~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~ 92 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAE---GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVI 92 (585)
T ss_pred HHhcCCHHHHHHHHHHHHh---CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEE
Confidence 3678999999998887764 333345789999999999999999999874221 112
Q ss_pred EecCccccCCCCCchh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 542 HIDMRKRNDGVSSHSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 542 ~idms~~~~~~~~~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.+|-+ ....++ .|.+.+...| |.||+|||+++.+...++.|+..||+-. .+++||++++.
T Consensus 93 ~i~~~-----~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp-~~tv~Il~t~~ 159 (585)
T PRK14950 93 EMDAA-----SHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPP-PHAIFILATTE 159 (585)
T ss_pred EEecc-----ccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCC-CCeEEEEEeCC
Confidence 22211 011123 3455555554 6799999999999999999999999865 47888888763
No 108
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.41 E-value=1.2e-06 Score=99.82 Aligned_cols=120 Identities=14% Similarity=0.144 Sum_probs=84.5
Q ss_pred cCCCchHHHHHHHHHHHHhhh--------C-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC----C
Q 003070 485 NVPWQFDSIHSIVEVLVECKS--------A-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND----G 551 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~--------g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~----~ 551 (850)
.|.|-++.+..|.+.|...-. | .+-.-+||.||+|+|||.+|+++|..+ ...|+++++++... .
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~~i~v~~~~l~~~~~g~ 208 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELVQKFIGE 208 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCCEEEeehHHHhHhhccc
Confidence 468888888888888754221 2 334558899999999999999999886 35689998876421 1
Q ss_pred CCCchhhHHHHhhhCCCEEEeecccccc-----------CHHHHHHHHhhhcc--Cc--cCceEEEEecCC
Q 003070 552 VSSHSEMLMGTLKNYEKLVVLVEDIDLA-----------DPQFIKILADGFET--EN--FGKVIFVLTKGD 607 (850)
Q Consensus 552 ~~~~~~~l~e~vr~~P~sVvlldeiekA-----------~~~v~~~l~q~~d~--G~--l~n~Iii~Tsn~ 607 (850)
....+..+-+..+.+..+||||||||.- ++.++..|++.+.. |. ..+.+||+|+|.
T Consensus 209 ~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~ 279 (389)
T PRK03992 209 GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNR 279 (389)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCC
Confidence 1112334555556777789999999974 57777777776632 21 248889999985
No 109
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=2.6e-06 Score=94.93 Aligned_cols=112 Identities=21% Similarity=0.347 Sum_probs=81.8
Q ss_pred CCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCc---------------------eEEec
Q 003070 486 VPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDL---------------------LFHID 544 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~---------------------~i~id 544 (850)
.|||..+-..+... ||---.+||.||+|+||+.+|+++|+.++-.... +..+.
T Consensus 5 yPWl~~~~~~~~~~------~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~ 78 (328)
T PRK05707 5 YPWQQSLWQQLAGR------GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLE 78 (328)
T ss_pred CCCcHHHHHHHHHC------CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEe
Confidence 59999999888653 6655567799999999999999999999864211 11111
Q ss_pred CccccCCCC-Cchh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 545 MRKRNDGVS-SHSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 545 ms~~~~~~~-~~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
. ++... -.++ .|.+.+...| |.|++||++|+-+..-+|.|+..+|+=- .+++|||+|+.
T Consensus 79 ~---~~~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp-~~~~fiL~t~~ 145 (328)
T PRK05707 79 P---EEADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPS-GDTVLLLISHQ 145 (328)
T ss_pred c---cCCCCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCC-CCeEEEEEECC
Confidence 0 00001 1234 3555555544 7799999999999999999999999944 68999999984
No 110
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.35 E-value=2.4e-06 Score=97.93 Aligned_cols=122 Identities=18% Similarity=0.189 Sum_probs=84.3
Q ss_pred HHHHHhccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC-------
Q 003070 478 LYKVLQENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------- 550 (850)
Q Consensus 478 L~~~L~~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~------- 550 (850)
++..+.+ +.+-++.+..+..++.. ..-++|.||+|+|||.+|++||..+.|. ..+.+++|-.++.
T Consensus 170 ~~~~l~d-~~i~e~~le~l~~~L~~------~~~iil~GppGtGKT~lA~~la~~l~~~-~~~~~v~~VtFHpsySYeDF 241 (459)
T PRK11331 170 LEDALND-LFIPETTIETILKRLTI------KKNIILQGPPGVGKTFVARRLAYLLTGE-KAPQRVNMVQFHQSYSYEDF 241 (459)
T ss_pred HHHHhhc-ccCCHHHHHHHHHHHhc------CCCEEEECCCCCCHHHHHHHHHHHhcCC-cccceeeEEeecccccHHHH
Confidence 3344554 56667777777777662 2367889999999999999999999874 3455666544321
Q ss_pred ---CCCCchh---------hHHHHhhhCC--CEEEeeccccccCHH-HHHHHHhhhccCc------------------c-
Q 003070 551 ---GVSSHSE---------MLMGTLKNYE--KLVVLVEDIDLADPQ-FIKILADGFETEN------------------F- 596 (850)
Q Consensus 551 ---~~~~~~~---------~l~e~vr~~P--~sVvlldeiekA~~~-v~~~l~q~~d~G~------------------l- 596 (850)
..|++++ .+....+++| ..||++|||+.|++. ++.-|++.||.++ |
T Consensus 242 I~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~ 321 (459)
T PRK11331 242 IQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFY 321 (459)
T ss_pred hcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccccccccc
Confidence 1233332 2344556555 359999999999955 7999999999642 2
Q ss_pred --CceEEEEecCC
Q 003070 597 --GKVIFVLTKGD 607 (850)
Q Consensus 597 --~n~Iii~Tsn~ 607 (850)
.|..||-|.|.
T Consensus 322 iP~Nl~IIgTMNt 334 (459)
T PRK11331 322 VPENVYIIGLMNT 334 (459)
T ss_pred CCCCeEEEEecCc
Confidence 28888888883
No 111
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.34 E-value=1.4e-06 Score=96.34 Aligned_cols=91 Identities=13% Similarity=0.200 Sum_probs=69.8
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCC-----C------CC-----ch-hhHHHHhhhCCCEEEee
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG-----V------SS-----HS-EMLMGTLKNYEKLVVLV 573 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~-----~------~~-----~~-~~l~e~vr~~P~sVvll 573 (850)
-+|+.||+|+|||.+|+.||..+ .-.++++.++..... . .| +. |-|+.|.++ + .++||
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~-g-~illl 140 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQH-N-VALCF 140 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhC-C-eEEEe
Confidence 48899999999999999999999 467888877654210 0 11 11 356777554 4 58999
Q ss_pred ccccccCHHHHHHHHhhhccC-cc------------CceEEEEecC
Q 003070 574 EDIDLADPQFIKILADGFETE-NF------------GKVIFVLTKG 606 (850)
Q Consensus 574 deiekA~~~v~~~l~q~~d~G-~l------------~n~Iii~Tsn 606 (850)
|||+.|+|+++..|..++|.+ .+ .+-.+|.|.|
T Consensus 141 DEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~N 186 (327)
T TIGR01650 141 DEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATAN 186 (327)
T ss_pred chhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeC
Confidence 999999999999999999954 43 1677899999
No 112
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.34 E-value=5.5e-06 Score=102.77 Aligned_cols=115 Identities=12% Similarity=0.220 Sum_probs=81.3
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCC-------CCceEEecCccccCCCCCch
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGS-------TDLLFHIDMRKRNDGVSSHS 556 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs-------~~~~i~idms~~~~~~~~~~ 556 (850)
+.|+||++.|..+...+.+ .. ....+|.||.|||||.+|+.||..+-.. ...++.+||+... ++..|.
T Consensus 187 d~~iGr~~ei~~~i~~l~r--~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~-ag~~~~ 261 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLR--RR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ-AGASVK 261 (852)
T ss_pred CcccCCHHHHHHHHHHHhc--CC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh-cccccc
Confidence 4689999998888886643 22 2377899999999999999999877322 2457888988642 223455
Q ss_pred h----h---HHHHhhh-CCCEEEeecccccc--------CHHHHHHHHhhhccCccCceEEEEecC
Q 003070 557 E----M---LMGTLKN-YEKLVVLVEDIDLA--------DPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 557 ~----~---l~e~vr~-~P~sVvlldeiekA--------~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
| + +.+.+++ ....|+|+|||..- ..++-++|+.++++|.++ +|.||+
T Consensus 262 ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~---~IgaTT 324 (852)
T TIGR03345 262 GEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELR---TIAATT 324 (852)
T ss_pred hHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeE---EEEecC
Confidence 3 2 3333443 34579999999864 345667899999999763 666664
No 113
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.32 E-value=6.2e-06 Score=94.17 Aligned_cols=99 Identities=15% Similarity=0.203 Sum_probs=62.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCC--CCceEEecCccccCC-----CCCchhhHHHHhhhCCCEEEeecccccc
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGS--TDLLFHIDMRKRNDG-----VSSHSEMLMGTLKNYEKLVVLVEDIDLA 579 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs--~~~~i~idms~~~~~-----~~~~~~~l~e~vr~~P~sVvlldeiekA 579 (850)
....+++|.||+|+|||.|+++++..+... ...+++++..++... ..+-.+.+.+.+++ ..||+||||+.-
T Consensus 134 ~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlLiiDDi~~l 211 (405)
T TIGR00362 134 KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRS--VDLLLIDDIQFL 211 (405)
T ss_pred ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHh--CCEEEEehhhhh
Confidence 334589999999999999999999988754 456777776553210 01112344455543 579999999863
Q ss_pred --CHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 580 --DPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 580 --~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
....+..|++.|+.=.-.+..+|+|+|.
T Consensus 212 ~~~~~~~~~l~~~~n~~~~~~~~iiits~~ 241 (405)
T TIGR00362 212 AGKERTQEEFFHTFNALHENGKQIVLTSDR 241 (405)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 2334444555444211123457778864
No 114
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.32 E-value=5.6e-06 Score=94.27 Aligned_cols=155 Identities=11% Similarity=0.097 Sum_probs=100.9
Q ss_pred CCcHHHHHHHHHHHhc-------------CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccc
Q 003070 69 SVSKEDIKLVFEVFLR-------------KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTL 135 (850)
Q Consensus 69 ~gRdeeirrVieIL~R-------------r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~ 135 (850)
.|+++.++.+.+.+.- ...++.+|.|+||+|||.+++.++... +..++.+..+.+
T Consensus 134 ~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~----------~~~~i~v~~~~l-- 201 (389)
T PRK03992 134 GGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRVVGSEL-- 201 (389)
T ss_pred CCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh----------CCCEEEeehHHH--
Confidence 3788888888776531 245679999999999999999999874 245777765533
Q ss_pred cccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccC-C
Q 003070 136 RFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNS-A 214 (850)
Q Consensus 136 ~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~-~ 214 (850)
....-|+.+..+.++....+. ..+.||||||++.|.+.....+. ++ ...+... +..+|.-.-. .
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~----~~p~IlfiDEiD~l~~~r~~~~~----~~----~~~~~~~---l~~lL~~ld~~~ 266 (389)
T PRK03992 202 VQKFIGEGARLVRELFELARE----KAPSIIFIDEIDAIAAKRTDSGT----SG----DREVQRT---LMQLLAEMDGFD 266 (389)
T ss_pred hHhhccchHHHHHHHHHHHHh----cCCeEEEEechhhhhcccccCCC----Cc----cHHHHHH---HHHHHHhccccC
Confidence 334467777888888877765 45789999999999875432110 00 0112222 3344421100 1
Q ss_pred CCCeEEEEecccHHHHHhhhhcCCcccc--cccceeeecCCCCc
Q 003070 215 SSTRVWLMATASYQTYMKCQMRQPPLEI--QWALQAVSIPSGGL 256 (850)
Q Consensus 215 arG~lwlIGatT~eeY~K~iekdPaLEr--~W~LQ~V~Vps~~~ 256 (850)
..+.+++||||+.-. .-||+|-| ||+. .+.||.|+.
T Consensus 267 ~~~~v~VI~aTn~~~-----~ld~allRpgRfd~-~I~v~~P~~ 304 (389)
T PRK03992 267 PRGNVKIIAATNRID-----ILDPAILRPGRFDR-IIEVPLPDE 304 (389)
T ss_pred CCCCEEEEEecCChh-----hCCHHHcCCccCce-EEEECCCCH
Confidence 346799999987654 45788876 6653 477776664
No 115
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.31 E-value=5.7e-06 Score=101.37 Aligned_cols=115 Identities=13% Similarity=0.210 Sum_probs=81.8
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCC-------CCceEEecCccccCCCCCch
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGS-------TDLLFHIDMRKRNDGVSSHS 556 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs-------~~~~i~idms~~~~~~~~~~ 556 (850)
+.|+||++-|..+.+.+.+ ..+ ...+|.||+|+|||.+|+.||..+... ...++.+|++.... ...|.
T Consensus 182 ~~~igr~~ei~~~~~~L~~--~~~--~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a-~~~~~ 256 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCR--RKK--NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLA-GTKYR 256 (731)
T ss_pred CcccCcHHHHHHHHHHHhc--CCC--CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhh-hcccc
Confidence 4789999999988865532 223 367899999999999999999887432 34678888765321 12243
Q ss_pred h-------hHHHHhhhCCCEEEeecccccc---------CHHHHHHHHhhhccCccCceEEEEecC
Q 003070 557 E-------MLMGTLKNYEKLVVLVEDIDLA---------DPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 557 ~-------~l~e~vr~~P~sVvlldeiekA---------~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
| .+.+.+++++..|+|||||+.- +.++.++|+..+++|.+ .+|.+||
T Consensus 257 g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i---~~IgaTt 319 (731)
T TIGR02639 257 GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKL---RCIGSTT 319 (731)
T ss_pred chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCe---EEEEecC
Confidence 3 2334445566789999999932 35789999999999865 4566554
No 116
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.31 E-value=1.8e-06 Score=97.21 Aligned_cols=121 Identities=16% Similarity=0.138 Sum_probs=80.7
Q ss_pred ccCCCchHHHHHHHHHHHHhhh--------C-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC----
Q 003070 484 ENVPWQFDSIHSIVEVLVECKS--------A-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND---- 550 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~--------g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~---- 550 (850)
+.|.|.++.+..|.++|...-. | .+-.-+||.||+|+|||.+|+++|..+. ..++++..++...
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~---~~~~~v~~~~l~~~~~g 198 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN---ATFIRVVGSELVRKYIG 198 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC---CCEEecchHHHHHHhhh
Confidence 3578889999999888864322 2 2223377899999999999999999873 4577776554211
Q ss_pred CCCCchhhHHHHhhhCCCEEEeecccccc-----------CHHHHHHHHhhhcc--Cc--cCceEEEEecCC
Q 003070 551 GVSSHSEMLMGTLKNYEKLVVLVEDIDLA-----------DPQFIKILADGFET--EN--FGKVIFVLTKGD 607 (850)
Q Consensus 551 ~~~~~~~~l~e~vr~~P~sVvlldeiekA-----------~~~v~~~l~q~~d~--G~--l~n~Iii~Tsn~ 607 (850)
.....+..+.+..+.+..+||||||||.. ++.++..|.+.+.. |. ..+..||+|+|.
T Consensus 199 ~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~ 270 (364)
T TIGR01242 199 EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNR 270 (364)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCC
Confidence 11112233444445555579999999974 56667666666532 21 348899999984
No 117
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.31 E-value=4.9e-06 Score=84.77 Aligned_cols=98 Identities=21% Similarity=0.335 Sum_probs=70.3
Q ss_pred hCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC---------------------ceEEecCccccCCCCCchhh---HH
Q 003070 505 SAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD---------------------LLFHIDMRKRNDGVSSHSEM---LM 560 (850)
Q Consensus 505 ~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~---------------------~~i~idms~~~~~~~~~~~~---l~ 560 (850)
.|+.-..+||.||+|+|||.+|+.+|+.+++..+ .+..++.. .. .-.++. +.
T Consensus 10 ~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~-~~~~~~i~~i~ 85 (188)
T TIGR00678 10 KGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQ-SIKVDQVRELV 85 (188)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cC-cCCHHHHHHHH
Confidence 4555578889999999999999999999987421 11111111 01 111333 35
Q ss_pred HHhhh----CCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 561 GTLKN----YEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 561 e~vr~----~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
+.+.. .++.||++||+|+.....++.|+..||+.. .+++|||++|.
T Consensus 86 ~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~-~~~~~il~~~~ 135 (188)
T TIGR00678 86 EFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPP-PNTLFILITPS 135 (188)
T ss_pred HHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCC-CCeEEEEEECC
Confidence 66655 456799999999999999999999999843 58889998763
No 118
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.30 E-value=6.8e-06 Score=96.27 Aligned_cols=116 Identities=14% Similarity=0.109 Sum_probs=76.9
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccc-------c------C
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR-------N------D 550 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~-------~------~ 550 (850)
..|.||..++..+.-++. ..--++|.||+|+|||.+|+.|+.++...... +.++...- . .
T Consensus 192 ~dv~Gq~~~~~al~~aa~------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~-~~le~~~i~s~~g~~~~~~~~~~ 264 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAAA------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNE-EAIETARIWSLVGKLIDRKQIKQ 264 (499)
T ss_pred HHhcCcHHHHhhhhhhcc------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCc-EEEeccccccchhhhcccccccc
Confidence 347999999877665542 22468899999999999999999988653221 11221110 0 0
Q ss_pred C----C------CCchh----hHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCcc------------CceEEEEe
Q 003070 551 G----V------SSHSE----MLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENF------------GKVIFVLT 604 (850)
Q Consensus 551 ~----~------~~~~~----~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l------------~n~Iii~T 604 (850)
. + ++.+| .-.+++..--.-|+|||||++..+.++..|+|.||+|.+ .+..+|.+
T Consensus 265 ~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa 344 (499)
T TIGR00368 265 RPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAA 344 (499)
T ss_pred CCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEe
Confidence 0 0 00000 011123333457999999999999999999999999985 26778888
Q ss_pred cC
Q 003070 605 KG 606 (850)
Q Consensus 605 sn 606 (850)
+|
T Consensus 345 ~N 346 (499)
T TIGR00368 345 MN 346 (499)
T ss_pred cC
Confidence 87
No 119
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.29 E-value=2.8e-06 Score=102.43 Aligned_cols=118 Identities=14% Similarity=0.234 Sum_probs=79.3
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHh----------cC------------------
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESV----------FG------------------ 535 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~l----------fg------------------ 535 (850)
..|+||++++.++.-+... ...+.+||.|+.|+|||.+|++|+.++ |+
T Consensus 4 ~~ivGq~~~~~al~~~av~----~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~ 79 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNAVD----PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYR 79 (633)
T ss_pred chhcChHHHHHHHHHHhhC----CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhccc
Confidence 3689999998766544442 234679999999999999999999998 22
Q ss_pred ----CCCceEEecCccccCCCCCchhhHHHHhh------------hCCCEEEeeccccccCHHHHHHHHhhhccCcc---
Q 003070 536 ----STDLLFHIDMRKRNDGVSSHSEMLMGTLK------------NYEKLVVLVEDIDLADPQFIKILADGFETENF--- 596 (850)
Q Consensus 536 ----s~~~~i~idms~~~~~~~~~~~~l~e~vr------------~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l--- 596 (850)
....|+.+..+--+..--|.++ +..+++ +-...|++||||+++.+.+++.|+++|++|.+
T Consensus 80 ~~~~~~~pfv~~p~~~t~~~l~G~~d-~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~ 158 (633)
T TIGR02442 80 PSEQRPVPFVNLPLGATEDRVVGSLD-IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVE 158 (633)
T ss_pred ccccCCCCeeeCCCCCcHHHcCCccc-HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEE
Confidence 1233444333211100001111 222222 11335999999999999999999999999963
Q ss_pred ---------CceEEEEecC
Q 003070 597 ---------GKVIFVLTKG 606 (850)
Q Consensus 597 ---------~n~Iii~Tsn 606 (850)
.+.++|.|+|
T Consensus 159 r~g~~~~~~~~~~lIat~n 177 (633)
T TIGR02442 159 REGLSVSHPARFVLIGTMN 177 (633)
T ss_pred ECCceeeecCCeEEEEecC
Confidence 2789999988
No 120
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.29 E-value=1.8e-05 Score=91.30 Aligned_cols=120 Identities=10% Similarity=0.134 Sum_probs=86.7
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCC----------CCC
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG----------VSS 554 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~----------~~~ 554 (850)
.++++..++..+.+.+.... .....+++.|++|+||+.+|+++..........|+.+|+....+. ...
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a--~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~ 221 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIA--LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGA 221 (457)
T ss_pred ceecccHHHhHHHHHHHHHc--CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCC
Confidence 47888888887777665443 346789999999999999999998877777789999999864210 000
Q ss_pred chh---hHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccC----------ceEEEEecC
Q 003070 555 HSE---MLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTKG 606 (850)
Q Consensus 555 ~~~---~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~----------n~Iii~Tsn 606 (850)
+.+ .-.+.+..-...+|+|||||..++.+|..|++.++++.+. |+-||.|||
T Consensus 222 ~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~ 286 (457)
T PRK11361 222 FTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATN 286 (457)
T ss_pred CCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCC
Confidence 000 0011122333569999999999999999999999998763 456666665
No 121
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=5.8e-06 Score=92.04 Aligned_cols=116 Identities=18% Similarity=0.264 Sum_probs=84.1
Q ss_pred CCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCC----------------------CceEEe
Q 003070 486 VPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGST----------------------DLLFHI 543 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~----------------------~~~i~i 543 (850)
-|||.++-..+..+ .||---.+||.||.|+|||.+|+.+|+.+.-.. ..|+.+
T Consensus 3 yPW~~~~w~~l~~~-----~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~ 77 (325)
T PRK08699 3 YPWHQEQWRQIAEH-----WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEI 77 (325)
T ss_pred CCccHHHHHHHHHh-----cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEE
Confidence 48999999998876 356556788999999999999999999886311 233444
Q ss_pred cCccc-cCCC---CC-chh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 544 DMRKR-NDGV---SS-HSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 544 dms~~-~~~~---~~-~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
+.... ++.+ .. -++ .|.+.+...| |.|+++|+++.-++..++.|++.+|+.. .+++||++|..
T Consensus 78 ~p~~~~~~~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~ 152 (325)
T PRK08699 78 TPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHA 152 (325)
T ss_pred ecccccccccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCC
Confidence 32110 0000 00 144 4666666655 5699999999999999999999999975 57878887774
No 122
>PHA02244 ATPase-like protein
Probab=98.28 E-value=3.4e-06 Score=94.61 Aligned_cols=92 Identities=15% Similarity=0.242 Sum_probs=68.9
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc--cccC----CCCC-ch-hhHHHHhhhCCCEEEeeccccccCHH
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR--KRND----GVSS-HS-EMLMGTLKNYEKLVVLVEDIDLADPQ 582 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms--~~~~----~~~~-~~-~~l~e~vr~~P~sVvlldeiekA~~~ 582 (850)
-+|+.||+|+|||.+|++||..+ ...|++++.. +.+- ...+ +. +.|+.++++ ..|++||||+.|+++
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~l---g~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~--GgvLiLDEId~a~p~ 195 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEAL---DLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKK--GGLFFIDEIDASIPE 195 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecChHHHhhcccccccccccchHHHHHhhc--CCEEEEeCcCcCCHH
Confidence 46789999999999999999985 3457766522 1110 1111 22 367777643 469999999999999
Q ss_pred HHHHHHhhhccCcc----------CceEEEEecCC
Q 003070 583 FIKILADGFETENF----------GKVIFVLTKGD 607 (850)
Q Consensus 583 v~~~l~q~~d~G~l----------~n~Iii~Tsn~ 607 (850)
++..|..+++++.| .|.-||+|+|.
T Consensus 196 vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~ 230 (383)
T PHA02244 196 ALIIINSAIANKFFDFADERVTAHEDFRVISAGNT 230 (383)
T ss_pred HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCC
Confidence 99999999998764 28889999993
No 123
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=3.4e-06 Score=93.98 Aligned_cols=120 Identities=21% Similarity=0.246 Sum_probs=83.1
Q ss_pred ccCCC-chHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC--ceE--------------EecCc
Q 003070 484 ENVPW-QFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD--LLF--------------HIDMR 546 (850)
Q Consensus 484 ~~V~g-Q~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~--~~i--------------~idms 546 (850)
++|.| |+.++..+..++. .|+---.+||.||.|+||+++|+++|+.++.... ..- +-|+.
T Consensus 5 ~~i~~~q~~~~~~L~~~~~---~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~ 81 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIA---KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVH 81 (329)
T ss_pred HHHHhhHHHHHHHHHHHHH---cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEE
Confidence 45566 9999999988875 4554556679999999999999999999986531 000 00111
Q ss_pred ccc-CCCCCchhh---HHHHhhhC----CCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 547 KRN-DGVSSHSEM---LMGTLKNY----EKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 547 ~~~-~~~~~~~~~---l~e~vr~~----P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
... ++..--++. +.+.+... +|.||++||+|+-....+|.|+..||+-- .+++|||+++.
T Consensus 82 ~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp-~~~~~Il~t~~ 149 (329)
T PRK08058 82 LVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPS-GGTTAILLTEN 149 (329)
T ss_pred EeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCC-CCceEEEEeCC
Confidence 000 011111343 44444433 46899999999999999999999999832 48999998873
No 124
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.28 E-value=1.2e-06 Score=84.51 Aligned_cols=89 Identities=21% Similarity=0.300 Sum_probs=56.0
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc------------ccCCCCCchhhHHHHhhhCCCEEEeecccccc
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK------------RNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLA 579 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~------------~~~~~~~~~~~l~e~vr~~P~sVvlldeiekA 579 (850)
+|+.|++|+|||.+|++||..+= -.|.||-+.- |+.. .+.......-+-. .|+|+|||-.|
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~---~~f~RIq~tpdllPsDi~G~~v~~~~-~~~f~~~~GPif~---~ill~DEiNra 74 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG---LSFKRIQFTPDLLPSDILGFPVYDQE-TGEFEFRPGPIFT---NILLADEINRA 74 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-----EEEEE--TT--HHHHHEEEEEETT-TTEEEEEE-TT-S---SEEEEETGGGS
T ss_pred EeeECCCccHHHHHHHHHHHHcC---CceeEEEecCCCCcccceeeeeeccC-CCeeEeecChhhh---ceeeecccccC
Confidence 58999999999999999999984 4566664431 1111 0111111111222 39999999999
Q ss_pred CHHHHHHHHhhhccCccC----------ceEEEEecCC
Q 003070 580 DPQFIKILADGFETENFG----------KVIFVLTKGD 607 (850)
Q Consensus 580 ~~~v~~~l~q~~d~G~l~----------n~Iii~Tsn~ 607 (850)
.|.+|..|+++|++++.+ .-+||.|-|.
T Consensus 75 ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp 112 (131)
T PF07726_consen 75 PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNP 112 (131)
T ss_dssp -HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-T
T ss_pred CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCc
Confidence 999999999999999963 5778888884
No 125
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3.9e-06 Score=98.82 Aligned_cols=141 Identities=21% Similarity=0.310 Sum_probs=103.1
Q ss_pred eecccCCCcCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhhhC--CCCeEEEEecCCchHHHHHHHHHHHHhcC
Q 003070 458 ITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA--KKATWFLLQGNDTIGKRRLALSIAESVFG 535 (850)
Q Consensus 458 t~l~lg~s~~~~~~~~~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~g--k~~~~~lf~Gp~gvGKt~lA~~LA~~lfg 535 (850)
|.+|-|++ ..+..++..-.+.|.+-=.|=++.=..|-+-|..++.- -..--++|.||+|||||.+||.+|+.|
T Consensus 388 t~LPWgk~---S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL-- 462 (906)
T KOG2004|consen 388 TSLPWGKS---STENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL-- 462 (906)
T ss_pred HhCCCCCC---ChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh--
Confidence 44555542 23345677788888888888888888888888877753 344678999999999999999999999
Q ss_pred CCCceEEecCcc---ccC--C-CCCchh----hHHHHhhh----CCCEEEeeccccccCH----HHHHHHHhhhccCc--
Q 003070 536 STDLLFHIDMRK---RND--G-VSSHSE----MLMGTLKN----YEKLVVLVEDIDLADP----QFIKILADGFETEN-- 595 (850)
Q Consensus 536 s~~~~i~idms~---~~~--~-~~~~~~----~l~e~vr~----~P~sVvlldeiekA~~----~v~~~l~q~~d~G~-- 595 (850)
...|.||-..- -.+ + -.+|+| ++.+++++ || |||||||||--. +=-..||..+|--.
T Consensus 463 -nRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP--liLiDEvDKlG~g~qGDPasALLElLDPEQNa 539 (906)
T KOG2004|consen 463 -NRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP--LILIDEVDKLGSGHQGDPASALLELLDPEQNA 539 (906)
T ss_pred -CCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc--eEEeehhhhhCCCCCCChHHHHHHhcChhhcc
Confidence 67889985432 111 1 135775 78888764 55 899999999532 22356788777554
Q ss_pred ------------cCceEEEEecC
Q 003070 596 ------------FGKVIFVLTKG 606 (850)
Q Consensus 596 ------------l~n~Iii~Tsn 606 (850)
++..+||.|.|
T Consensus 540 nFlDHYLdVp~DLSkVLFicTAN 562 (906)
T KOG2004|consen 540 NFLDHYLDVPVDLSKVLFICTAN 562 (906)
T ss_pred chhhhccccccchhheEEEEecc
Confidence 36999999999
No 126
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.26 E-value=3.9e-06 Score=95.76 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=77.8
Q ss_pred cCCCchHHHHHHHHHHHHh--------hhC-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC----C
Q 003070 485 NVPWQFDSIHSIVEVLVEC--------KSA-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND----G 551 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~--------r~g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~----~ 551 (850)
.|.|.+..+..|-++|..- +.| .+..-+||.||+|+|||.+|+++|..+ ...|+++..+++.. .
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~fi~i~~s~l~~k~~ge 222 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATFIRVVGSEFVQKYLGE 222 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHHHHHHhcch
Confidence 4678888888887777532 123 233456688999999999999999986 35688887654311 1
Q ss_pred CCCchhhHHHHhhhCCCEEEeecccccc-----------CHHHHHHHHhhhcc--C--ccCceEEEEecCC
Q 003070 552 VSSHSEMLMGTLKNYEKLVVLVEDIDLA-----------DPQFIKILADGFET--E--NFGKVIFVLTKGD 607 (850)
Q Consensus 552 ~~~~~~~l~e~vr~~P~sVvlldeiekA-----------~~~v~~~l~q~~d~--G--~l~n~Iii~Tsn~ 607 (850)
....+..+-...+.+-.+||||||||.- +..++..+.+.+.. | .-.+.+||+|||.
T Consensus 223 ~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~ 293 (398)
T PTZ00454 223 GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNR 293 (398)
T ss_pred hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCC
Confidence 1112333444445555689999999952 45565555554432 2 1247889999984
No 127
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.25 E-value=1.8e-05 Score=91.37 Aligned_cols=119 Identities=11% Similarity=0.115 Sum_probs=85.2
Q ss_pred CCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC----------CCCCc
Q 003070 486 VPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND----------GVSSH 555 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~----------~~~~~ 555 (850)
+++...++..|.+.+... + .....+++.|.+|+||+.+|++|..........|+.+|+....+ ....|
T Consensus 136 lig~s~~~~~v~~~i~~~-a-~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~ 213 (463)
T TIGR01818 136 LIGEAPAMQEVFRAIGRL-S-RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAF 213 (463)
T ss_pred eeecCHHHHHHHHHHHHH-h-CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCC
Confidence 567777777777777552 2 33457789999999999999999999888889999999876421 00011
Q ss_pred hhhH---HHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccC----------ceEEEEecC
Q 003070 556 SEML---MGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTKG 606 (850)
Q Consensus 556 ~~~l---~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~----------n~Iii~Tsn 606 (850)
.+.. .+.+.......|+||||+..++.+|..|++.+++|.+. |+-||+|++
T Consensus 214 ~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~ 277 (463)
T TIGR01818 214 TGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATH 277 (463)
T ss_pred CCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCC
Confidence 1111 11122333467999999999999999999999999863 555666664
No 128
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.24 E-value=7.6e-06 Score=95.44 Aligned_cols=119 Identities=16% Similarity=0.230 Sum_probs=86.2
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCC--CceEE--------------ecCccc
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGST--DLLFH--------------IDMRKR 548 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~--~~~i~--------------idms~~ 548 (850)
.|+||+..+..+..++..-|- .--+||.||-|||||.+||-+|+.|==.. ..-.+ +|.-|.
T Consensus 17 evvGQe~v~~~L~nal~~~ri---~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEi 93 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGRI---AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEI 93 (515)
T ss_pred HhcccHHHHHHHHHHHHhCcc---hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhh
Confidence 359999999999999987554 34466999999999999999999873221 00011 122222
Q ss_pred cCCCCCchh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 549 NDGVSSHSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 549 ~~~~~~~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
|.+...-|+ .|-|.+.-.| |-|.++||+..-....+|.||.-+|+= ..+++|||.+..
T Consensus 94 DaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEP-P~hV~FIlATTe 158 (515)
T COG2812 94 DAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEP-PSHVKFILATTE 158 (515)
T ss_pred hhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccC-ccCeEEEEecCC
Confidence 222222233 5777777776 569999999999999999999988873 569999998754
No 129
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.23 E-value=2.1e-05 Score=90.53 Aligned_cols=120 Identities=13% Similarity=0.108 Sum_probs=83.6
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCC----------CCC
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG----------VSS 554 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~----------~~~ 554 (850)
.++++...+..+...+... .....++++.|++|+||+.+|+++...-......|+.+|+....+. ...
T Consensus 140 ~lig~s~~~~~l~~~i~~~--a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~ 217 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKI--APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGA 217 (445)
T ss_pred ceeecCHHHHHHHHHHHHH--hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCC
Confidence 3566677776666655532 2345677899999999999999999887767788999999864210 000
Q ss_pred chh---hHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccC----------ceEEEEecC
Q 003070 555 HSE---MLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTKG 606 (850)
Q Consensus 555 ~~~---~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~----------n~Iii~Tsn 606 (850)
|.+ ...+.+.+--..+++|||||.-++.+|..|++.+++|.+. |+-||.||+
T Consensus 218 ~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~ 282 (445)
T TIGR02915 218 FTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATN 282 (445)
T ss_pred cCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecC
Confidence 111 0111122233568999999999999999999999999862 456666654
No 130
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.23 E-value=2.2e-06 Score=89.04 Aligned_cols=113 Identities=13% Similarity=0.158 Sum_probs=72.6
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcccc-----------C--
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRN-----------D-- 550 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~-----------~-- 550 (850)
..|+||++|..++-=|.. |. .-+||.||.|+|||.+|+.|+.+| ..+-.-.+-|.. .
T Consensus 3 ~dI~GQe~aKrAL~iAAa----G~--h~lLl~GppGtGKTmlA~~l~~lL----P~l~~~e~le~~~i~s~~~~~~~~~~ 72 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAA----GG--HHLLLIGPPGTGKTMLARRLPSLL----PPLTEEEALEVSKIYSVAGLGPDEGL 72 (206)
T ss_dssp CCSSSTHHHHHHHHHHHH----CC----EEEES-CCCTHHHHHHHHHHCS------CCEECCESS--S-TT---S---EE
T ss_pred hhhcCcHHHHHHHHHHHc----CC--CCeEEECCCCCCHHHHHHHHHHhC----CCCchHHHhhhccccccccCCCCCce
Confidence 468999999876655443 53 489999999999999999999887 222222222210 0
Q ss_pred -CCCCch------------h----hHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccC------------ceEE
Q 003070 551 -GVSSHS------------E----MLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG------------KVIF 601 (850)
Q Consensus 551 -~~~~~~------------~----~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~------------n~Ii 601 (850)
..+.|. | .--++|..--+-|+||||+-.-++.+.+.|+|.+|+|+.. |-++
T Consensus 73 ~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~l 152 (206)
T PF01078_consen 73 IRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLL 152 (206)
T ss_dssp EE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEE
T ss_pred ecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEE
Confidence 000110 1 0111233344569999999999999999999999999863 8999
Q ss_pred EEecC
Q 003070 602 VLTKG 606 (850)
Q Consensus 602 i~Tsn 606 (850)
|.|.|
T Consensus 153 v~a~N 157 (206)
T PF01078_consen 153 VAAMN 157 (206)
T ss_dssp EEEE-
T ss_pred EEEec
Confidence 99999
No 131
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.21 E-value=5.2e-06 Score=92.90 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=42.9
Q ss_pred cCCCchHHHHHHHHHHHHhhhCC--CCeEEEEecCCchHHHHHHHHHHHHh
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAK--KATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk--~~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.|.||++|+.++++.+.....|. +.--++|+||+|+|||+||++||+.+
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999988877652 34568899999999999999999887
No 132
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.20 E-value=4.3e-06 Score=93.29 Aligned_cols=119 Identities=10% Similarity=0.060 Sum_probs=76.8
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhc------CCCCceEEe----cCcccc--C--
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVF------GSTDLLFHI----DMRKRN--D-- 550 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lf------gs~~~~i~i----dms~~~--~-- 550 (850)
.|+||++++.++.-++.... .+-+||.||.|+|||.+|++||.+|= |.+-+++++ |+.+.+ +
T Consensus 9 ~i~Gq~~~~~~l~~~~~~~~----~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 84 (334)
T PRK13407 9 AIVGQEEMKQAMVLTAIDPG----IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTMI 84 (334)
T ss_pred HhCCHHHHHHHHHHHHhccC----CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCccc
Confidence 47899999988776544322 24699999999999999999999981 111111111 121110 0
Q ss_pred --------CCCC-----chh--hHHHH-------hhhCCC-----EEEeeccccccCHHHHHHHHhhhccCcc-------
Q 003070 551 --------GVSS-----HSE--MLMGT-------LKNYEK-----LVVLVEDIDLADPQFIKILADGFETENF------- 596 (850)
Q Consensus 551 --------~~~~-----~~~--~l~e~-------vr~~P~-----sVvlldeiekA~~~v~~~l~q~~d~G~l------- 596 (850)
-|.+ .+| -+..+ ++.-|. -|+++|||+.+.+.++..|+++|++|..
T Consensus 85 ~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G~ 164 (334)
T PRK13407 85 ERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGL 164 (334)
T ss_pred ccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECCe
Confidence 0111 112 12222 222222 3899999999999999999999999973
Q ss_pred -----CceEEEEecCC
Q 003070 597 -----GKVIFVLTKGD 607 (850)
Q Consensus 597 -----~n~Iii~Tsn~ 607 (850)
...++|.|.|.
T Consensus 165 ~~~~p~rfiviAt~NP 180 (334)
T PRK13407 165 SIRHPARFVLVGSGNP 180 (334)
T ss_pred EEecCCCEEEEecCCc
Confidence 26788888883
No 133
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.20 E-value=1.3e-05 Score=92.90 Aligned_cols=96 Identities=18% Similarity=0.255 Sum_probs=60.2
Q ss_pred CCCCeEEEEecCCchHHHHHHHHHHHHhcCC--CCceEEecCccccCC-----CCCchhhHHHHhhhCCCEEEeeccccc
Q 003070 506 AKKATWFLLQGNDTIGKRRLALSIAESVFGS--TDLLFHIDMRKRNDG-----VSSHSEMLMGTLKNYEKLVVLVEDIDL 578 (850)
Q Consensus 506 gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs--~~~~i~idms~~~~~-----~~~~~~~l~e~vr~~P~sVvlldeiek 578 (850)
|....+++|.||+|+|||.|++++|..+... ...++.++..++... ..+-.+.+.+.+++ +.||+||||+.
T Consensus 145 ~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlLiiDDi~~ 222 (450)
T PRK00149 145 GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRS--VDVLLIDDIQF 222 (450)
T ss_pred CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhc--CCEEEEehhhh
Confidence 3444689999999999999999999988654 345677766543110 00112334445552 67999999985
Q ss_pred c--CH----HHHHHHHhhhccCccCceEEEEecCC
Q 003070 579 A--DP----QFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 579 A--~~----~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
- .. .++..|-...+.|+ .+|+|||.
T Consensus 223 l~~~~~~~~~l~~~~n~l~~~~~----~iiits~~ 253 (450)
T PRK00149 223 LAGKERTQEEFFHTFNALHEAGK----QIVLTSDR 253 (450)
T ss_pred hcCCHHHHHHHHHHHHHHHHCCC----cEEEECCC
Confidence 2 22 34444444455553 36777764
No 134
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.19 E-value=2.4e-05 Score=92.28 Aligned_cols=110 Identities=10% Similarity=0.086 Sum_probs=83.3
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCC-----CCCch-hh
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG-----VSSHS-EM 558 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~-----~~~~~-~~ 558 (850)
.++|+..++..+-+.+.+.- +.+.++|+.|.+|+||+.+|++|-..-......|+.|||....+. --||. |.
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A--~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~ga 290 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYA--RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGA 290 (526)
T ss_pred heeeCCHHHHHHHHHHHHHh--CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccc
Confidence 37899999998888876543 346799999999999999999998876667789999999865220 00111 12
Q ss_pred HHHHhh--------hCCCEEEeeccccccCHHHHHHHHhhhccCcc
Q 003070 559 LMGTLK--------NYEKLVVLVEDIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 559 l~e~vr--------~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l 596 (850)
+|++-+ .--...+|||||+..++.+|..|+++|+++.+
T Consensus 291 ftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~ 336 (526)
T TIGR02329 291 FTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREV 336 (526)
T ss_pred cccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcE
Confidence 333321 11235899999999999999999999999986
No 135
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=1.5e-05 Score=89.59 Aligned_cols=119 Identities=14% Similarity=0.183 Sum_probs=81.5
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCc---eEEe--cCcc-----------
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDL---LFHI--DMRK----------- 547 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~---~i~i--dms~----------- 547 (850)
..|+||++|+..+..++.. |+----+||.||.|+|||.+|+.+|+.++..... -..+ .+..
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~---grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYRE---GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGA 99 (351)
T ss_pred hhccCcHHHHHHHHHHHHc---CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCC
Confidence 3579999999999999864 4433344589999999999999999999873210 0000 0000
Q ss_pred ----------ccCC----CCC-chh---hHHHHhh----hCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEec
Q 003070 548 ----------RNDG----VSS-HSE---MLMGTLK----NYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTK 605 (850)
Q Consensus 548 ----------~~~~----~~~-~~~---~l~e~vr----~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Ts 605 (850)
.++. ... .++ .+.+.+. ...|.||++||+|..++..+|.|+..+|+-. .+++|||.+
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp-~~~~fiLit 178 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP-ARALFILIS 178 (351)
T ss_pred CCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC-CCceEEEEE
Confidence 0000 000 133 2344443 3567899999999999999999999999843 478888877
Q ss_pred C
Q 003070 606 G 606 (850)
Q Consensus 606 n 606 (850)
+
T Consensus 179 ~ 179 (351)
T PRK09112 179 H 179 (351)
T ss_pred C
Confidence 6
No 136
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=1.6e-05 Score=88.23 Aligned_cols=119 Identities=23% Similarity=0.269 Sum_probs=84.3
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCc------------------eEEecC-
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDL------------------LFHIDM- 545 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~------------------~i~idm- 545 (850)
-.|||..+...+..++.. ||---.+||.||.|+||+.+|.++|+.++..... +..++.
T Consensus 5 ~yPW~~~~~~~l~~~~~~---~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~ 81 (319)
T PRK08769 5 FSPWQQRAYDQTVAALDA---GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFI 81 (319)
T ss_pred ccccHHHHHHHHHHHHHc---CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecC
Confidence 459999999999988865 4333456799999999999999999998875421 111110
Q ss_pred ccccC-C--CCCchh---hHHHHhhhCCC----EEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 546 RKRND-G--VSSHSE---MLMGTLKNYEK----LVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 546 s~~~~-~--~~~~~~---~l~e~vr~~P~----sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
-+... . ..=.++ .+.+.+...|+ .||++|+.|+-.....|.||..+|+=- .|++|||+|+.
T Consensus 82 p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-~~~~fiL~~~~ 152 (319)
T PRK08769 82 PNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPS-PGRYLWLISAQ 152 (319)
T ss_pred CCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCC-CCCeEEEEECC
Confidence 00000 0 000244 35555556664 799999999999999999999999843 59999999984
No 137
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.16 E-value=3.8e-05 Score=80.83 Aligned_cols=113 Identities=14% Similarity=0.142 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcC--CCCceEEecCccccCC-----CCCchhhHHHHhh
Q 003070 492 SIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFG--STDLLFHIDMRKRNDG-----VSSHSEMLMGTLK 564 (850)
Q Consensus 492 ai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfg--s~~~~i~idms~~~~~-----~~~~~~~l~e~vr 564 (850)
.+-..+.+|... .+....++++.||+|+|||.|..+++..+-. ....+++++..++... ..+-...+-+.++
T Consensus 18 ~a~~~~~~ia~~-~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~ 96 (219)
T PF00308_consen 18 LAYAAAKAIAEN-PGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR 96 (219)
T ss_dssp HHHHHHHHHHHS-TTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC
T ss_pred HHHHHHHHHHhc-CCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh
Confidence 334455555433 2333457889999999999999999988764 3557888887665210 0111233444444
Q ss_pred hCCCEEEeeccccccC--HHHHHHHHhhhccCccCceEEEEecCC
Q 003070 565 NYEKLVVLVEDIDLAD--PQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 565 ~~P~sVvlldeiekA~--~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.+.|++||||+.-. +..+..|...++.=+-.+.-+|+||+.
T Consensus 97 --~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~ 139 (219)
T PF00308_consen 97 --SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDR 139 (219)
T ss_dssp --TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred --cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCC
Confidence 67899999999742 445667776666544455567888863
No 138
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.16 E-value=3e-05 Score=93.08 Aligned_cols=54 Identities=24% Similarity=0.221 Sum_probs=46.4
Q ss_pred HHHHHHhccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCC
Q 003070 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGS 536 (850)
Q Consensus 477 ~L~~~L~~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs 536 (850)
.+.+.|.+.|+||++|+..+..++...+ -++|.||+|+|||.+|++||+.+...
T Consensus 11 ~~~~~~~~~viG~~~a~~~l~~a~~~~~------~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 11 PVPERLIDQVIGQEEAVEIIKKAAKQKR------NVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred CcchhhHhhccCHHHHHHHHHHHHHcCC------CEEEECCCCCCHHHHHHHHHHHcCch
Confidence 3456788999999999998888887532 67799999999999999999999766
No 139
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.14 E-value=6.2e-06 Score=96.71 Aligned_cols=120 Identities=19% Similarity=0.171 Sum_probs=74.8
Q ss_pred CCCchHHHHHHHHHHHHhhh-------C-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCC----CC
Q 003070 486 VPWQFDSIHSIVEVLVECKS-------A-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG----VS 553 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~-------g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~----~~ 553 (850)
|+|++++..++-+.+...+. | ++..-+||.||+|+|||.+|++||... .-.|+.++.+++.+. ..
T Consensus 57 i~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~~g~~~ 133 (495)
T TIGR01241 57 VAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVEMFVGVGA 133 (495)
T ss_pred hCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCeeeccHHHHHHHHhcccH
Confidence 46666665555554443221 2 333458899999999999999999876 457888887764221 11
Q ss_pred CchhhHHHHhhhCCCEEEeecccccc-----------C---HHHHHHHHhhhccCc-cCceEEEEecCCC
Q 003070 554 SHSEMLMGTLKNYEKLVVLVEDIDLA-----------D---PQFIKILADGFETEN-FGKVIFVLTKGDS 608 (850)
Q Consensus 554 ~~~~~l~e~vr~~P~sVvlldeiekA-----------~---~~v~~~l~q~~d~G~-l~n~Iii~Tsn~~ 608 (850)
..+..+.+..+++.-+||||||||.- + ..+.+.|+..||.=. -.+.+||.|||..
T Consensus 134 ~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~ 203 (495)
T TIGR01241 134 SRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRP 203 (495)
T ss_pred HHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCCh
Confidence 12223444445555579999999873 2 235556666665311 1267899999943
No 140
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=1.7e-05 Score=88.17 Aligned_cols=117 Identities=13% Similarity=0.154 Sum_probs=82.9
Q ss_pred CCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc------cc----------
Q 003070 486 VPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK------RN---------- 549 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~------~~---------- 549 (850)
.|||..+-..+.+++...|. ---+||.||+|+||+.+|+++|..++-....-.. -+.. ..
T Consensus 4 yPW~~~~~~~l~~~~~~~rl---~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~-~Cg~C~sC~~~~~g~HPD~~~i 79 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLG---HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQ-PCGQCHSCHLFQAGNHPDFHIL 79 (325)
T ss_pred CcchHHHHHHHHHHHHcCCc---ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHhcCCCCCEEEE
Confidence 49999999999988876443 2356699999999999999999988764321000 0100 00
Q ss_pred ---CCCCCchh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 550 ---DGVSSHSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 550 ---~~~~~~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
++..--++ .|.+.+...| |.|+++|++|+-.....|.||..+|+ -=.+++|||+|+.
T Consensus 80 ~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE-Pp~~~~fiL~t~~ 146 (325)
T PRK06871 80 EPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE-PRPNTYFLLQADL 146 (325)
T ss_pred ccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC-CCCCeEEEEEECC
Confidence 00001133 3445555554 58999999999999999999999999 3459999999883
No 141
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.14 E-value=9.1e-06 Score=90.89 Aligned_cols=124 Identities=13% Similarity=0.222 Sum_probs=83.4
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCC------CceEEecCccccC-------
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGST------DLLFHIDMRKRND------- 550 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~------~~~i~idms~~~~------- 550 (850)
+.++|.++-+..|...+..+-.|....++++.||+|+|||.+++++++.+-... -.++.+++.....
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 357888888899999888766665556899999999999999999998774322 2577888764311
Q ss_pred --------C---CC-Cc-----hhhHHHHhh-hCCCEEEeecccccc---CHHHHHHHHhhhccCcc--CceEEEEecCC
Q 003070 551 --------G---VS-SH-----SEMLMGTLK-NYEKLVVLVEDIDLA---DPQFIKILADGFETENF--GKVIFVLTKGD 607 (850)
Q Consensus 551 --------~---~~-~~-----~~~l~e~vr-~~P~sVvlldeiekA---~~~v~~~l~q~~d~G~l--~n~Iii~Tsn~ 607 (850)
+ +. ++ ...+.+.+. .++..||+|||+|.. +.++...|++..+.... .+.++|+++|.
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 0 11 11 123444444 355679999999988 33444455555333444 36788888874
No 142
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.13 E-value=1e-05 Score=90.39 Aligned_cols=118 Identities=14% Similarity=0.206 Sum_probs=77.7
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHh----------cCC---CCceEEecCccc---
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESV----------FGS---TDLLFHIDMRKR--- 548 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~l----------fgs---~~~~i~idms~~--- 548 (850)
.|+||++++.++.-++.. ...+++++.|+.|+|||+++++||.++ |+. +..++..++...
T Consensus 5 ~ivgq~~~~~al~~~~~~----~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 80 (337)
T TIGR02030 5 AIVGQDEMKLALLLNVID----PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDS 80 (337)
T ss_pred ccccHHHHHHHHHHHhcC----CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhc
Confidence 589999999887666552 235789999999999999999999998 441 122221111110
Q ss_pred -c------------CCCC-----Cchh--hHHHHhh------------hCCCEEEeeccccccCHHHHHHHHhhhccCc-
Q 003070 549 -N------------DGVS-----SHSE--MLMGTLK------------NYEKLVVLVEDIDLADPQFIKILADGFETEN- 595 (850)
Q Consensus 549 -~------------~~~~-----~~~~--~l~e~vr------------~~P~sVvlldeiekA~~~v~~~l~q~~d~G~- 595 (850)
+ +-|. .++| -+..+++ +--..|+++|||+.+.+.+|..|+++|++|.
T Consensus 81 ~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~ 160 (337)
T TIGR02030 81 QEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWN 160 (337)
T ss_pred ccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCCe
Confidence 0 0111 1122 1222221 1112499999999999999999999999996
Q ss_pred -c----------CceEEEEecC
Q 003070 596 -F----------GKVIFVLTKG 606 (850)
Q Consensus 596 -l----------~n~Iii~Tsn 606 (850)
+ ...|+|.|.|
T Consensus 161 ~v~r~G~~~~~~~r~iviat~n 182 (337)
T TIGR02030 161 VVEREGISIRHPARFVLVGSGN 182 (337)
T ss_pred EEEECCEEEEcCCCEEEEeccc
Confidence 2 1567888877
No 143
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.12 E-value=8.8e-06 Score=95.27 Aligned_cols=119 Identities=14% Similarity=0.176 Sum_probs=74.4
Q ss_pred CCCchHHHHHHHHHHHHh--------hhC-CCCeEEEEecCCchHHHHHHHHHHHHhcCC-------CCceEEecCcccc
Q 003070 486 VPWQFDSIHSIVEVLVEC--------KSA-KKATWFLLQGNDTIGKRRLALSIAESVFGS-------TDLLFHIDMRKRN 549 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~--------r~g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs-------~~~~i~idms~~~ 549 (850)
|.|+++.+..|-++|..- +.| ++-.-+||.||+|+|||.+|+++|..+.-. ...|+.+..++..
T Consensus 184 IgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl 263 (512)
T TIGR03689 184 IGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELL 263 (512)
T ss_pred cCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhc
Confidence 457777777777777532 123 233458899999999999999999987422 2334555433321
Q ss_pred CCCCCchh-------hHHHHhhh----CCCEEEeecccccc--------C----HHHHHHHHhhhccCc-cCceEEEEec
Q 003070 550 DGVSSHSE-------MLMGTLKN----YEKLVVLVEDIDLA--------D----PQFIKILADGFETEN-FGKVIFVLTK 605 (850)
Q Consensus 550 ~~~~~~~~-------~l~e~vr~----~P~sVvlldeiekA--------~----~~v~~~l~q~~d~G~-l~n~Iii~Ts 605 (850)
. .|++ .+-+..++ +..+||||||||.- + ..+.+.|++.||.-. ..+.|||+||
T Consensus 264 ~---kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~AT 340 (512)
T TIGR03689 264 N---KYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGAS 340 (512)
T ss_pred c---cccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEecc
Confidence 1 1332 23333333 35679999999953 1 134566777666422 2589999999
Q ss_pred CC
Q 003070 606 GD 607 (850)
Q Consensus 606 n~ 607 (850)
|-
T Consensus 341 N~ 342 (512)
T TIGR03689 341 NR 342 (512)
T ss_pred CC
Confidence 94
No 144
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.12 E-value=8.2e-06 Score=94.07 Aligned_cols=120 Identities=14% Similarity=0.166 Sum_probs=76.6
Q ss_pred cCCCchHHHHHHHHHHHHhh--------hC-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCC----
Q 003070 485 NVPWQFDSIHSIVEVLVECK--------SA-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG---- 551 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r--------~g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~---- 551 (850)
.|.|.++.+..|.+++..-- .| .+.--+||.||+|+|||.+|+++|..+ ...|++++.++.-..
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~fi~V~~seL~~k~~Ge 260 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATFLRVVGSELIQKYLGD 260 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCEEEEecchhhhhhcch
Confidence 34888888999888886321 12 233346688999999999999999977 356888887764211
Q ss_pred CCCchhhHHHHhhhCCCEEEeecccccc-----------CHHHHHHHHhhhc--cC--ccCceEEEEecCC
Q 003070 552 VSSHSEMLMGTLKNYEKLVVLVEDIDLA-----------DPQFIKILADGFE--TE--NFGKVIFVLTKGD 607 (850)
Q Consensus 552 ~~~~~~~l~e~vr~~P~sVvlldeiekA-----------~~~v~~~l~q~~d--~G--~l~n~Iii~Tsn~ 607 (850)
.+..+..+.+..+.+-.+||||||||.. +..++..+++.+. +| .-.+.+||+|||.
T Consensus 261 ~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr 331 (438)
T PTZ00361 261 GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNR 331 (438)
T ss_pred HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCC
Confidence 1111223334445555679999999853 2444444444332 12 1237889999984
No 145
>PRK15115 response regulator GlrR; Provisional
Probab=98.11 E-value=5.6e-05 Score=87.00 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=82.5
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCC---------CC-C
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG---------VS-S 554 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~---------~~-~ 554 (850)
.++++..++..+.+.+... .....++++.|++|+||+.+|+.+...-......|+.+|+....+. .. .
T Consensus 135 ~lig~s~~~~~~~~~~~~~--a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~ 212 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMV--AQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGA 212 (444)
T ss_pred cccccCHHHHHHHHHHHhh--ccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCC
Confidence 3556665555544443332 2445788999999999999999999988777789999998865210 00 0
Q ss_pred chhh---HHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccC----------ceEEEEecC
Q 003070 555 HSEM---LMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTKG 606 (850)
Q Consensus 555 ~~~~---l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~----------n~Iii~Tsn 606 (850)
+.+. -...+.+.-...|+|||||.-.+.+|..|++.+++|.+. |+-||.||+
T Consensus 213 ~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~ 277 (444)
T PRK15115 213 FTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATH 277 (444)
T ss_pred CCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCC
Confidence 1110 001122223458999999999999999999999999863 567777665
No 146
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=2.8e-05 Score=86.34 Aligned_cols=119 Identities=14% Similarity=0.152 Sum_probs=84.1
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEE---------------ecCccc-
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFH---------------IDMRKR- 548 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~---------------idms~~- 548 (850)
-.|||.++-..+.+++.. ||----+||.||.|+||+.+|+++|+.++-....--. =|+-..
T Consensus 4 ~yPWl~~~~~~l~~~~~~---~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDA---GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIK 80 (319)
T ss_pred CcccHHHHHHHHHHHHHc---CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe
Confidence 359999999999888764 4434567799999999999999999988765421000 000000
Q ss_pred -cCCCCC-chh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 549 -NDGVSS-HSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 549 -~~~~~~-~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
++.+.. -++ .+.+.+...| |.|+++|++|+-.....|.|+..+|+=- .||+|||+|+.
T Consensus 81 p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-~~t~fiL~t~~ 147 (319)
T PRK06090 81 PEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPA-PNCLFLLVTHN 147 (319)
T ss_pred cCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCC-CCeEEEEEECC
Confidence 000011 133 3444554555 8999999999999999999999999943 58999999884
No 147
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.09 E-value=6.4e-05 Score=90.27 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=39.5
Q ss_pred cCCCchHHHHHHHHHHHHhhhC-CCCeEEEEecCCchHHHHHHHHHHHHh
Q 003070 485 NVPWQFDSIHSIVEVLVECKSA-KKATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~g-k~~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.|.+|++.|..|...+.....+ .+.--++|.||+|+|||.+++.||..+
T Consensus 85 el~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 85 ELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999888887655443 233468899999999999999999876
No 148
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.09 E-value=2.1e-05 Score=84.66 Aligned_cols=137 Identities=11% Similarity=0.062 Sum_probs=84.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeEEE
Q 003070 88 RNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIY 167 (850)
Q Consensus 88 ~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvILf 167 (850)
.|.+|.|+||+|||.+++.+++.+..-. .+....++.++-+.+ -+..-|+.+.+++++.+.. . +-|||
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~~---~~~~~~~v~~~~~~l--~~~~~g~~~~~~~~~~~~a------~-~~VL~ 110 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEMN---VLSKGHLIEVERADL--VGEYIGHTAQKTREVIKKA------L-GGVLF 110 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhcC---cccCCceEEecHHHh--hhhhccchHHHHHHHHHhc------c-CCEEE
Confidence 3568999999999999999999875421 223345677665433 3444667777777765442 2 34899
Q ss_pred ecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccccccce
Q 003070 168 TGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQ 247 (850)
Q Consensus 168 IdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr~W~LQ 247 (850)
|||+|.|...+. .+-...++. .||+.+ +..++.+.+|.+++..+-..+...+|+|.+|+. .
T Consensus 111 IDE~~~L~~~~~--------------~~~~~~~i~---~Ll~~~-e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~-~ 171 (261)
T TIGR02881 111 IDEAYSLARGGE--------------KDFGKEAID---TLVKGM-EDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFP-I 171 (261)
T ss_pred EechhhhccCCc--------------cchHHHHHH---HHHHHH-hccCCCEEEEecCCcchhHHHHhcChHHHhccc-e
Confidence 999999963211 011111222 244432 223577888887665554555677899999863 3
Q ss_pred eeecCCCC
Q 003070 248 AVSIPSGG 255 (850)
Q Consensus 248 ~V~Vps~~ 255 (850)
.+..|..+
T Consensus 172 ~i~f~~~~ 179 (261)
T TIGR02881 172 SIDFPDYT 179 (261)
T ss_pred EEEECCCC
Confidence 45666544
No 149
>PRK08116 hypothetical protein; Validated
Probab=98.09 E-value=1.2e-05 Score=87.25 Aligned_cols=95 Identities=14% Similarity=0.148 Sum_probs=68.5
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcccc--------CCCCCchhhHHHHhhhCCCEEEeeccc--ccc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRN--------DGVSSHSEMLMGTLKNYEKLVVLVEDI--DLA 579 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~--------~~~~~~~~~l~e~vr~~P~sVvlldei--ekA 579 (850)
.+++|.|++|+|||.||.++|..+......++.+++++.- .........+.+.++.. .||+|||+ ++.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~--dlLviDDlg~e~~ 192 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNA--DLLILDDLGAERD 192 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCC--CEEEEecccCCCC
Confidence 4799999999999999999999887555667777765421 01001112344455543 59999999 888
Q ss_pred CHHHHHHHHhhhccCccCceEEEEecC
Q 003070 580 DPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 580 ~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
....+..|.++|+.-.-.+.-+|+|||
T Consensus 193 t~~~~~~l~~iin~r~~~~~~~IiTsN 219 (268)
T PRK08116 193 TEWAREKVYNIIDSRYRKGLPTIVTTN 219 (268)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 888899999999875444566888999
No 150
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.06 E-value=4.3e-05 Score=92.71 Aligned_cols=124 Identities=14% Similarity=0.157 Sum_probs=83.5
Q ss_pred ccCCCchHHHHHHHHHHHHhhhC-CCCeEEEEecCCchHHHHHHHHHHHHhcCC------C-CceEEecCcccc------
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSA-KKATWFLLQGNDTIGKRRLALSIAESVFGS------T-DLLFHIDMRKRN------ 549 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs------~-~~~i~idms~~~------ 549 (850)
+++++.++=+.+|+..|.-+-.| .+...|++.|++|+|||.+++.+.+.|-.. . -.++.|++....
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 68899999999999999987765 344567899999999999999998766211 1 246788874321
Q ss_pred ---------CCCC-C-----chhhHHHHh--hhCCCEEEeeccccccCHHHHHHHHhhhccCcc--CceEEEEecCC
Q 003070 550 ---------DGVS-S-----HSEMLMGTL--KNYEKLVVLVEDIDLADPQFIKILADGFETENF--GKVIFVLTKGD 607 (850)
Q Consensus 550 ---------~~~~-~-----~~~~l~e~v--r~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l--~n~Iii~Tsn~ 607 (850)
..|+ + +++.+.+.+ +.+...||+|||||.--..-+..|++.|+--.. ...+||..+|.
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 1122 2 122344433 234567999999998765556777777663222 25677787774
No 151
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.06 E-value=4e-05 Score=95.19 Aligned_cols=109 Identities=13% Similarity=0.256 Sum_probs=79.2
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCC-------CCceEEecCccccCCCCCch
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGS-------TDLLFHIDMRKRNDGVSSHS 556 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs-------~~~~i~idms~~~~~~~~~~ 556 (850)
..|+|.++-|..+.+.+.+. .++ ..+|.||+|||||.+|+.||..+-.. ...++.+|++..- ++..|.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~--~~~--n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~-ag~~~~ 253 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR--TKN--NPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLL-AGTKYR 253 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc--ccC--CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHh-ccCCCc
Confidence 46899999999999987533 233 56899999999999999999987432 3568888886431 122344
Q ss_pred h-------hHHHHhhhCCCEEEeeccccc--------cCHHHHHHHHhhhccCccC
Q 003070 557 E-------MLMGTLKNYEKLVVLVEDIDL--------ADPQFIKILADGFETENFG 597 (850)
Q Consensus 557 ~-------~l~e~vr~~P~sVvlldeiek--------A~~~v~~~l~q~~d~G~l~ 597 (850)
| .+-+.++++...|+|||||+. .+.++.++|+.++..|.++
T Consensus 254 ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~ 309 (821)
T CHL00095 254 GEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQ 309 (821)
T ss_pred cHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcE
Confidence 4 344445666678999999972 1236788999999999873
No 152
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=4.1e-05 Score=85.64 Aligned_cols=119 Identities=16% Similarity=0.139 Sum_probs=84.1
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCc-eEEe---------------cCccc
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDL-LFHI---------------DMRKR 548 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~-~i~i---------------dms~~ 548 (850)
-.|||..+-..+.+++.. ||----+||.||.|+||+.+|.++|..++..... --.. |+-..
T Consensus 3 ~yPWl~~~~~~l~~~~~~---~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i 79 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQA---GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL 79 (334)
T ss_pred CCCCChHHHHHHHHHHHc---CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE
Confidence 359999999999888775 4433466799999999999999999999864221 0000 00000
Q ss_pred c-CCC-CC-chh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 549 N-DGV-SS-HSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 549 ~-~~~-~~-~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
. +.. .. .++ .|.+.+..+| |.|+++|+.|+-...-.|.||..+|+= =.+|+|||+|+.
T Consensus 80 ~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-p~~t~fiL~t~~ 147 (334)
T PRK07993 80 TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEP-PENTWFFLACRE 147 (334)
T ss_pred ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCC-CCCeEEEEEECC
Confidence 0 000 10 234 3555555554 579999999999999999999999994 449999999983
No 153
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.03 E-value=1.6e-05 Score=77.30 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=81.6
Q ss_pred CCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhhhC
Q 003070 487 PWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY 566 (850)
Q Consensus 487 ~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~~ 566 (850)
+|+..++..+-+.+.+... ....+|+.|+.|+||+.+|++|...-......|+.+|+.... .+.+ .+-
T Consensus 1 vG~S~~~~~l~~~l~~~a~--~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~------~~~l----~~a 68 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK--SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP------AELL----EQA 68 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC--SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC------HHHH----HHC
T ss_pred CCCCHHHHHHHHHHHHHhC--CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc------HHHH----HHc
Confidence 4677888888888876653 356788999999999999999999887777888888877532 2222 223
Q ss_pred CCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 567 EKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 567 P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.-..++|+|||..++..|..|++.++...=.|+=+|+||+
T Consensus 69 ~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~ 108 (138)
T PF14532_consen 69 KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSS 108 (138)
T ss_dssp TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEEC
T ss_pred CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 4558999999999999999999999987645777888887
No 154
>CHL00176 ftsH cell division protein; Validated
Probab=98.03 E-value=1.6e-05 Score=95.79 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=74.3
Q ss_pred CCCchHHHHHHHHHHHHhhh-------C-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCC---
Q 003070 486 VPWQFDSIHSIVEVLVECKS-------A-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSS--- 554 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~-------g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~--- 554 (850)
|.|++++...+.+.+..-+. | +...-+||.||+|+|||.+|++||... ...++.++++++.+...+
T Consensus 185 v~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p~i~is~s~f~~~~~g~~~ 261 (638)
T CHL00176 185 IAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVPFFSISGSEFVEMFVGVGA 261 (638)
T ss_pred ccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeeeccHHHHHHHhhhhhH
Confidence 55666665555555433322 2 223458899999999999999999876 467888988875321111
Q ss_pred -chhhHHHHhhhCCCEEEeecccccc-----------CHH---HHHHHHhhhccCcc--CceEEEEecCC
Q 003070 555 -HSEMLMGTLKNYEKLVVLVEDIDLA-----------DPQ---FIKILADGFETENF--GKVIFVLTKGD 607 (850)
Q Consensus 555 -~~~~l~e~vr~~P~sVvlldeiekA-----------~~~---v~~~l~q~~d~G~l--~n~Iii~Tsn~ 607 (850)
.+..+-+..+++..+||||||||.. +.. +.+.|+..|| |.- .+.+||.|||.
T Consensus 262 ~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~d-g~~~~~~ViVIaaTN~ 330 (638)
T CHL00176 262 ARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMD-GFKGNKGVIVIAATNR 330 (638)
T ss_pred HHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhc-cccCCCCeeEEEecCc
Confidence 1223334445555679999999864 233 4444555554 222 36789999984
No 155
>PF13173 AAA_14: AAA domain
Probab=98.02 E-value=8.6e-06 Score=78.09 Aligned_cols=92 Identities=15% Similarity=0.286 Sum_probs=67.2
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhhhC---CCEEEeeccccccCHHHHHH
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY---EKLVVLVEDIDLADPQFIKI 586 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~~---P~sVvlldeiekA~~~v~~~ 586 (850)
-..++.||-|||||++++.+|+.+. ..++.+.+|+.......-.-.+ +.+.+++. ...+|+||||.++. +.+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~iDEiq~~~-~~~~~ 79 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLADPD-LLEYFLELIKPGKKYIFIDEIQYLP-DWEDA 79 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHhhhh-hHHHHHHhhccCCcEEEEehhhhhc-cHHHH
Confidence 3578999999999999999998887 7788899998864211000001 33333332 35689999999985 89999
Q ss_pred HHhhhccCccCceEEEEecC
Q 003070 587 LADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 587 l~q~~d~G~l~n~Iii~Tsn 606 (850)
+....|++ .|.-||+|++
T Consensus 80 lk~l~d~~--~~~~ii~tgS 97 (128)
T PF13173_consen 80 LKFLVDNG--PNIKIILTGS 97 (128)
T ss_pred HHHHHHhc--cCceEEEEcc
Confidence 99999988 6766677665
No 156
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.02 E-value=2.9e-05 Score=91.09 Aligned_cols=152 Identities=12% Similarity=0.131 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhc---------CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHH
Q 003070 73 EDIKLVFEVFLR---------KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEV 143 (850)
Q Consensus 73 eeirrVieIL~R---------r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~Rgef 143 (850)
++++.+++.|.. +..++.+|.|+||+|||.+++.+|... ++.++.++.+. +..+.-|+-
T Consensus 65 ~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~i~~~~--~~~~~~g~~ 132 (495)
T TIGR01241 65 EELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSISGSD--FVEMFVGVG 132 (495)
T ss_pred HHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCeeeccHHH--HHHHHhccc
Confidence 456666665532 234689999999999999999998652 45567665442 222334555
Q ss_pred HHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEe
Q 003070 144 EMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMA 223 (850)
Q Consensus 144 E~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIG 223 (850)
+.+++++.+.++. ..+.||||||++.+.......- ++ ..+..+.++.++=+.+..+. .++.+-+||
T Consensus 133 ~~~l~~~f~~a~~----~~p~Il~iDEid~l~~~r~~~~-----~~---~~~~~~~~~~~lL~~~d~~~--~~~~v~vI~ 198 (495)
T TIGR01241 133 ASRVRDLFEQAKK----NAPCIIFIDEIDAVGRQRGAGL-----GG---GNDEREQTLNQLLVEMDGFG--TNTGVIVIA 198 (495)
T ss_pred HHHHHHHHHHHHh----cCCCEEEEechhhhhhccccCc-----CC---ccHHHHHHHHHHHhhhcccc--CCCCeEEEE
Confidence 6788888888775 4568999999999986542100 00 01223334333333333221 345699999
Q ss_pred cccHHHHHhhhhcCCcccc--cccceeeecCCCCc
Q 003070 224 TASYQTYMKCQMRQPPLEI--QWALQAVSIPSGGL 256 (850)
Q Consensus 224 atT~eeY~K~iekdPaLEr--~W~LQ~V~Vps~~~ 256 (850)
||..-+ .-||+|-| ||+ ..+.||-|..
T Consensus 199 aTn~~~-----~ld~al~r~gRfd-~~i~i~~Pd~ 227 (495)
T TIGR01241 199 ATNRPD-----VLDPALLRPGRFD-RQVVVDLPDI 227 (495)
T ss_pred ecCChh-----hcCHHHhcCCcce-EEEEcCCCCH
Confidence 997653 45788887 665 3477766663
No 157
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=2.2e-05 Score=86.88 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=86.4
Q ss_pred CCCchHHHHHHHHHHHHhh--------hC-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccc----cCCC
Q 003070 486 VPWQFDSIHSIVEVLVECK--------SA-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR----NDGV 552 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r--------~g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~----~~~~ 552 (850)
|.|=++-|.+|-++|..-- -| +|--=.|+.||+|+|||-||||.|..- ...|||+--|+. =..+
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtFIrvvgSElVqKYiGEG 229 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DATFIRVVGSELVQKYIGEG 229 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CceEEEeccHHHHHHHhccc
Confidence 4555555666666665332 24 343345589999999999999999876 789999999874 1122
Q ss_pred CCchhhHHHHhhhCCCEEEeeccccc-----------cCHHHHHHHHhhhcc--Cc--cCceEEEEecCC
Q 003070 553 SSHSEMLMGTLKNYEKLVVLVEDIDL-----------ADPQFIKILADGFET--EN--FGKVIFVLTKGD 607 (850)
Q Consensus 553 ~~~~~~l~e~vr~~P~sVvlldeiek-----------A~~~v~~~l~q~~d~--G~--l~n~Iii~Tsn~ 607 (850)
+-.|-.|-+.-|+|-=|+||+||||- +|.+||.-++|.+-. |- ..|.=|||.||-
T Consensus 230 aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR 299 (406)
T COG1222 230 ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNR 299 (406)
T ss_pred hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCC
Confidence 23344566667888889999999994 799999999986643 21 359999999994
No 158
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.00 E-value=4.1e-05 Score=81.51 Aligned_cols=115 Identities=15% Similarity=0.105 Sum_probs=90.1
Q ss_pred CCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhhhC
Q 003070 487 PWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNY 566 (850)
Q Consensus 487 ~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~~ 566 (850)
+|-++....|.+...+.-.|+|---.|+.|+-|+||+.++|+|...+....=.+|.++=.. -.++..|.+.|+.+
T Consensus 30 ~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~-----L~~l~~l~~~l~~~ 104 (249)
T PF05673_consen 30 IGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED-----LGDLPELLDLLRDR 104 (249)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH-----hccHHHHHHHHhcC
Confidence 5556666677777788888999989999999999999999999988877776677665322 23567899999988
Q ss_pred CCE-EEeeccccc-cCHHHHHHHHhhhccCcc---CceEEEEecC
Q 003070 567 EKL-VVLVEDIDL-ADPQFIKILADGFETENF---GKVIFVLTKG 606 (850)
Q Consensus 567 P~s-Vvlldeiek-A~~~v~~~l~q~~d~G~l---~n~Iii~Tsn 606 (850)
|+. |||+||+-. ++..-.+.|+-+||-|-- .|++|..|||
T Consensus 105 ~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 105 PYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred CCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence 876 888999874 444556777777776653 3999999999
No 159
>PRK12377 putative replication protein; Provisional
Probab=97.99 E-value=2e-05 Score=84.62 Aligned_cols=96 Identities=13% Similarity=0.170 Sum_probs=66.5
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC------CCCCchhhHHHHhhhCCCEEEeeccc--cccC
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------GVSSHSEMLMGTLKNYEKLVVLVEDI--DLAD 580 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~------~~~~~~~~l~e~vr~~P~sVvlldei--ekA~ 580 (850)
..+|+|.||+|+|||.||.+||..+......++.+.+.+... ........+.+.+. -..||+|||| +...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~--~~dLLiIDDlg~~~~s 178 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELC--KVDLLVLDEIGIQRET 178 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCCCC
Confidence 469999999999999999999998876656667676654211 00001122333333 3469999999 7777
Q ss_pred HHHHHHHHhhhccCccCceEEEEecC
Q 003070 581 PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 581 ~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
...+..|.++|+.=.-.+.=+|+|||
T Consensus 179 ~~~~~~l~~ii~~R~~~~~ptiitSN 204 (248)
T PRK12377 179 KNEQVVLNQIIDRRTASMRSVGMLTN 204 (248)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 88888999999875433344467899
No 160
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.99 E-value=0.00012 Score=87.67 Aligned_cols=96 Identities=15% Similarity=0.126 Sum_probs=65.6
Q ss_pred HHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHH------------hhhC
Q 003070 499 VLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGT------------LKNY 566 (850)
Q Consensus 499 av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~------------vr~~ 566 (850)
|+..+--.-..|-+|+.|+.|+|||.+|++|+..+-+ ...|+++..+..+..-.|.++ |+.. |-+-
T Consensus 6 Al~l~av~p~~g~vLl~G~~GtgKs~lar~l~~~~~~-~~pfv~i~~~~t~d~L~G~id-l~~~~~~g~~~~~~G~L~~A 83 (589)
T TIGR02031 6 ALTLLAVDPSLGGVAIRARAGTGKTALARALAEILPP-IMPFVELPLGVTEDRLIGGID-VEESLAGGQRVTQPGLLDEA 83 (589)
T ss_pred HHHHhccCCCcceEEEEcCCCcHHHHHHHHHHHhCCc-CCCeEecCcccchhhcccchh-hhhhhhcCcccCCCCCeeeC
Confidence 3343333434789999999999999999999998743 335888875322211112221 1111 1112
Q ss_pred CCEEEeeccccccCHHHHHHHHhhhccCcc
Q 003070 567 EKLVVLVEDIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 567 P~sVvlldeiekA~~~v~~~l~q~~d~G~l 596 (850)
...|+++|||+.+.+.+|+.|+++|++|.+
T Consensus 84 ~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v 113 (589)
T TIGR02031 84 PRGVLYVDMANLLDDGLSNRLLQALDEGVV 113 (589)
T ss_pred CCCcEeccchhhCCHHHHHHHHHHHHcCCe
Confidence 225999999999999999999999999984
No 161
>CHL00176 ftsH cell division protein; Validated
Probab=97.99 E-value=3.8e-05 Score=92.52 Aligned_cols=151 Identities=11% Similarity=0.153 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhcCC---------CCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhH
Q 003070 72 KEDIKLVFEVFLRKK---------RRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEE 142 (850)
Q Consensus 72 deeirrVieIL~Rr~---------K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~Rge 142 (850)
.++++.+++-|.... .++.+|.|+||+|||.+++.+|... ++.++.++.+. +..+.-|.
T Consensus 192 k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~----------~~p~i~is~s~--f~~~~~g~ 259 (638)
T CHL00176 192 KEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------EVPFFSISGSE--FVEMFVGV 259 (638)
T ss_pred HHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeeeccHHH--HHHHhhhh
Confidence 456666666655332 3578999999999999999998753 34566665442 22333444
Q ss_pred HHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccC-CCCCeEEE
Q 003070 143 VEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNS-ASSTRVWL 221 (850)
Q Consensus 143 fE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~-~arG~lwl 221 (850)
-..++.++...+.. ..+.||||||++.+........ ++ ..+..+.+ +..||...-. ..+..+-+
T Consensus 260 ~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~-----~~---~~~e~~~~---L~~LL~~~dg~~~~~~ViV 324 (638)
T CHL00176 260 GAARVRDLFKKAKE----NSPCIVFIDEIDAVGRQRGAGI-----GG---GNDEREQT---LNQLLTEMDGFKGNKGVIV 324 (638)
T ss_pred hHHHHHHHHHHHhc----CCCcEEEEecchhhhhcccCCC-----CC---CcHHHHHH---HHHHHhhhccccCCCCeeE
Confidence 45677777777664 5678999999999975432110 00 01222333 3344432100 12346999
Q ss_pred EecccHHHHHhhhhcCCcccc--cccceeeecCCCC
Q 003070 222 MATASYQTYMKCQMRQPPLEI--QWALQAVSIPSGG 255 (850)
Q Consensus 222 IGatT~eeY~K~iekdPaLEr--~W~LQ~V~Vps~~ 255 (850)
||||+.-+. -||+|-| ||+. .+.|+-|.
T Consensus 325 IaaTN~~~~-----LD~ALlRpGRFd~-~I~v~lPd 354 (638)
T CHL00176 325 IAATNRVDI-----LDAALLRPGRFDR-QITVSLPD 354 (638)
T ss_pred EEecCchHh-----hhhhhhccccCce-EEEECCCC
Confidence 999876543 4688877 5654 35665555
No 162
>PRK04132 replication factor C small subunit; Provisional
Probab=97.96 E-value=6.1e-05 Score=92.69 Aligned_cols=98 Identities=13% Similarity=0.191 Sum_probs=71.9
Q ss_pred CCeEEEEec--CCchHHHHHHHHHHHHhcCC--CCceEEecCccccCCCCCchh-hHHHHhhhC-----CCEEEeecccc
Q 003070 508 KATWFLLQG--NDTIGKRRLALSIAESVFGS--TDLLFHIDMRKRNDGVSSHSE-MLMGTLKNY-----EKLVVLVEDID 577 (850)
Q Consensus 508 ~~~~~lf~G--p~gvGKt~lA~~LA~~lfgs--~~~~i~idms~~~~~~~~~~~-~l~e~vr~~-----P~sVvlldeie 577 (850)
|..--|+.| |.+.|||++|++||+.+||. ...++.||-|..- .-.-+. .+-+..+.. +|.||+|||+|
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r--gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER--GINVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc--cHHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 333445668 99999999999999999996 4578888877531 100111 222333223 46899999999
Q ss_pred ccCHHHHHHHHhhhccCccCceEEEEecCCC
Q 003070 578 LADPQFIKILADGFETENFGKVIFVLTKGDS 608 (850)
Q Consensus 578 kA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~~ 608 (850)
+-....|+.|+..||+-. .++.|||+||..
T Consensus 641 ~Lt~~AQnALLk~lEep~-~~~~FILi~N~~ 670 (846)
T PRK04132 641 ALTQDAQQALRRTMEMFS-SNVRFILSCNYS 670 (846)
T ss_pred cCCHHHHHHHHHHhhCCC-CCeEEEEEeCCh
Confidence 999999999999999722 488999999853
No 163
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=1.6e-05 Score=84.05 Aligned_cols=98 Identities=18% Similarity=0.234 Sum_probs=75.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccc----cCCCCCchhhHHHHhhhCCCEEEeeccccc----
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR----NDGVSSHSEMLMGTLKNYEKLVVLVEDIDL---- 578 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~----~~~~~~~~~~l~e~vr~~P~sVvlldeiek---- 578 (850)
-|.|. |+.||+|+|||.|||+.|..- ..+|||+.-||| -..+|-.+--+....|+|--++||+||||-
T Consensus 188 pprgv-llygppg~gktml~kava~~t---~a~firvvgsefvqkylgegprmvrdvfrlakenapsiifideidaiatk 263 (408)
T KOG0727|consen 188 PPRGV-LLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATK 263 (408)
T ss_pred CCcce-EEeCCCCCcHHHHHHHHhhcc---chheeeeccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhh
Confidence 34555 478999999999999999764 689999999986 223444555455556889899999999985
Q ss_pred -------cCHHHHHHHHhhhccCc-c---CceEEEEecCCC
Q 003070 579 -------ADPQFIKILADGFETEN-F---GKVIFVLTKGDS 608 (850)
Q Consensus 579 -------A~~~v~~~l~q~~d~G~-l---~n~Iii~Tsn~~ 608 (850)
||.+||.+|+..+..=- | .|.=+||.+|-+
T Consensus 264 rfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnra 304 (408)
T KOG0727|consen 264 RFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRA 304 (408)
T ss_pred hccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcc
Confidence 89999999987654311 2 499999999944
No 164
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.96 E-value=0.00017 Score=76.83 Aligned_cols=93 Identities=15% Similarity=0.209 Sum_probs=62.0
Q ss_pred HHHHhccCCCchHHHHHHHHHHHHhhh-----CC-CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCC
Q 003070 479 YKVLQENVPWQFDSIHSIVEVLVECKS-----AK-KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGV 552 (850)
Q Consensus 479 ~~~L~~~V~gQ~eai~~Ia~av~~~r~-----gk-~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~ 552 (850)
.+.--.-|+||++|=.+ |+.|...-- |+ .---.||.||+|+|||.|||+||.-. .-.|+.+.-.+.-
T Consensus 116 ~~it~ddViGqEeAK~k-crli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~l~vkat~li--- 188 (368)
T COG1223 116 SDITLDDVIGQEEAKRK-CRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPLLLVKATELI--- 188 (368)
T ss_pred ccccHhhhhchHHHHHH-HHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCceEEechHHHH---
Confidence 33444678999998443 333333322 21 12357899999999999999999654 4566666544321
Q ss_pred CCchh-------hHHHHhhhCCCEEEeeccccc
Q 003070 553 SSHSE-------MLMGTLKNYEKLVVLVEDIDL 578 (850)
Q Consensus 553 ~~~~~-------~l~e~vr~~P~sVvlldeiek 578 (850)
.-||| .|++.-|+---+|||+||+|-
T Consensus 189 GehVGdgar~Ihely~rA~~~aPcivFiDE~DA 221 (368)
T COG1223 189 GEHVGDGARRIHELYERARKAAPCIVFIDELDA 221 (368)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhh
Confidence 11343 677778888889999999984
No 165
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.96 E-value=7.6e-05 Score=86.54 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=58.1
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCC-----CCCchhhHHHHhhhCCCEEEeecccccc--C
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG-----VSSHSEMLMGTLKNYEKLVVLVEDIDLA--D 580 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~-----~~~~~~~l~e~vr~~P~sVvlldeiekA--~ 580 (850)
+--+++|.||+|+|||.|++++|..+.-....++.+.+..+... ..+....+-+..+ -+.|++||||+.- .
T Consensus 140 ~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~--~~dvLiIDDiq~l~~k 217 (445)
T PRK12422 140 PFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR--NVDALFIEDIEVFSGK 217 (445)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc--cCCEEEEcchhhhcCC
Confidence 34579999999999999999999887644466677765443110 0011122222222 2459999999863 2
Q ss_pred HHHHHHHHhhhccCccCceEEEEecCC
Q 003070 581 PQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 581 ~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
...+..|+..|+.=.-.+..||+||+.
T Consensus 218 ~~~qeelf~l~N~l~~~~k~IIlts~~ 244 (445)
T PRK12422 218 GATQEEFFHTFNSLHTEGKLIVISSTC 244 (445)
T ss_pred hhhHHHHHHHHHHHHHCCCcEEEecCC
Confidence 334444544443211123467888864
No 166
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.95 E-value=4.7e-05 Score=83.25 Aligned_cols=136 Identities=8% Similarity=0.120 Sum_probs=83.3
Q ss_pred CeEEEcCCCchHHHHHHHHHHhHHh-CCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeEEE
Q 003070 89 NTVIVGDCLSITDALVFDFMGRVER-GDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIY 167 (850)
Q Consensus 89 NPVLVGe~gvgktAvVegla~rI~~-G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvILf 167 (850)
+.+|.|+||+|||-+++.+++.+.. |-+ ..-.++.++...+ + +...|+-+.++.++.+.. .|-|||
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~----~~~~~v~v~~~~l-~-~~~~g~~~~~~~~~~~~a-------~~gvL~ 126 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYV----RKGHLVSVTRDDL-V-GQYIGHTAPKTKEILKRA-------MGGVLF 126 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCc----ccceEEEecHHHH-h-HhhcccchHHHHHHHHHc-------cCcEEE
Confidence 6678899999999999999988764 322 2335776664333 1 122333344554444332 235999
Q ss_pred ecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccccccce
Q 003070 168 TGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQ 247 (850)
Q Consensus 168 IdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr~W~LQ 247 (850)
|||++.|...... .+....++..+-++|.. .++++.+|+|++...=..+...+|+|.+|+. .
T Consensus 127 iDEi~~L~~~~~~-------------~~~~~~~~~~Ll~~le~----~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~-~ 188 (284)
T TIGR02880 127 IDEAYYLYRPDNE-------------RDYGQEAIEILLQVMEN----QRDDLVVILAGYKDRMDSFFESNPGFSSRVA-H 188 (284)
T ss_pred EechhhhccCCCc-------------cchHHHHHHHHHHHHhc----CCCCEEEEEeCCcHHHHHHHhhCHHHHhhCC-c
Confidence 9999998643210 01122333444455543 3578999999876544455566899999875 3
Q ss_pred eeecCCCC
Q 003070 248 AVSIPSGG 255 (850)
Q Consensus 248 ~V~Vps~~ 255 (850)
.+.+|..+
T Consensus 189 ~i~fp~l~ 196 (284)
T TIGR02880 189 HVDFPDYS 196 (284)
T ss_pred EEEeCCcC
Confidence 46667654
No 167
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.92 E-value=3e-05 Score=86.95 Aligned_cols=118 Identities=12% Similarity=0.151 Sum_probs=76.5
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCC----CceEEecCcc----------cc-
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGST----DLLFHIDMRK----------RN- 549 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~----~~~i~idms~----------~~- 549 (850)
.|+||+++..++.-++..- ..+-+||.||.|+|||.+|+.|++++-... ..|. .|... +.
T Consensus 18 ~ivGq~~~k~al~~~~~~p----~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~p~~~~~~~~~~~~ 92 (350)
T CHL00081 18 AIVGQEEMKLALILNVIDP----KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSDPELMSDEVREAIQ 92 (350)
T ss_pred HHhChHHHHHHHHHhccCC----CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCChhhhchhhhhhhc
Confidence 4799999988887776643 235678999999999999999999985321 1111 11100 00
Q ss_pred C---------------CCCCch-hh------HHHHhh------------hCCCEEEeeccccccCHHHHHHHHhhhccCc
Q 003070 550 D---------------GVSSHS-EM------LMGTLK------------NYEKLVVLVEDIDLADPQFIKILADGFETEN 595 (850)
Q Consensus 550 ~---------------~~~~~~-~~------l~e~vr------------~~P~sVvlldeiekA~~~v~~~l~q~~d~G~ 595 (850)
. -|.+.. ++ +..+++ +--..|+++|||+.+.+.+|..|+++|++|.
T Consensus 93 ~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~ 172 (350)
T CHL00081 93 NGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASGW 172 (350)
T ss_pred ccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhCC
Confidence 0 011111 11 222221 1123599999999999999999999999975
Q ss_pred --c----------CceEEEEecCC
Q 003070 596 --F----------GKVIFVLTKGD 607 (850)
Q Consensus 596 --l----------~n~Iii~Tsn~ 607 (850)
+ ...|+|.|.|.
T Consensus 173 ~~ier~G~s~~~p~rfiviaT~np 196 (350)
T CHL00081 173 NTVEREGISIRHPARFVLVGSGNP 196 (350)
T ss_pred eEEeeCCeeeecCCCEEEEeccCc
Confidence 2 16788888873
No 168
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.91 E-value=3e-05 Score=83.02 Aligned_cols=95 Identities=16% Similarity=0.194 Sum_probs=66.3
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC------CCCCc-hhhHHHHhhhCCCEEEeeccccccC--
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------GVSSH-SEMLMGTLKNYEKLVVLVEDIDLAD-- 580 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~------~~~~~-~~~l~e~vr~~P~sVvlldeiekA~-- 580 (850)
.+|+|.|++|+|||.||.+||..+......++.+++.+... ..... ...+-+.+. -+.||+||||..-.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~s 177 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTES 177 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCCC
Confidence 48999999999999999999998876667777777665311 00111 123445555 36799999997543
Q ss_pred HHHHHHHHhhhccCccCceEEEEecC
Q 003070 581 PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 581 ~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
......|.++|+.-.-.+--+|+|||
T Consensus 178 ~~~~~~l~~Ii~~Ry~~~~~tiitSN 203 (244)
T PRK07952 178 RYEKVIINQIVDRRSSSKRPTGMLTN 203 (244)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 33455788888874434667778899
No 169
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.91 E-value=4.8e-05 Score=86.10 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=82.0
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCC--CCceEEecCccccC-----------
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGS--TDLLFHIDMRKRND----------- 550 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs--~~~~i~idms~~~~----------- 550 (850)
+.+++.++-+..|...+..+-.|.....+++.||+|+|||.+++.+++.+-.. .-.++.+++.....
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 34667777777777777665545444568999999999999999999887543 24578888764311
Q ss_pred ----CCC--C-----chhhHHHHhhh-CCCEEEeeccccccC----HHHHHHHHhhhccCccCceEEEEecCC
Q 003070 551 ----GVS--S-----HSEMLMGTLKN-YEKLVVLVEDIDLAD----PQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 551 ----~~~--~-----~~~~l~e~vr~-~P~sVvlldeiekA~----~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
..+ + ....+.+.+++ +.+.||+|||++... .+++..|++.+++-.-.+..||+++|.
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~ 182 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSD 182 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECC
Confidence 111 1 12245555553 456799999999864 556666666665433237778888884
No 170
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.89 E-value=0.00018 Score=82.61 Aligned_cols=120 Identities=11% Similarity=0.160 Sum_probs=98.4
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC----C-CCCch-hh
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND----G-VSSHS-EM 558 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~----~-~~~~~-~~ 558 (850)
.+|||..|+.++.+.|... .+.+...|++|-||+||.-+|+++=++=--..+.||.++|...-+ + ==||. |-
T Consensus 224 ~iIG~S~am~~ll~~i~~V--A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGA 301 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEVV--AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGA 301 (550)
T ss_pred cceecCHHHHHHHHHHHHH--hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccccc
Confidence 5799999999888888753 245788999999999999999999998888899999999986421 1 01232 57
Q ss_pred HHHHhhhCCCE-------EEeeccccccCHHHHHHHHhhhccCccC----------ceEEEEecC
Q 003070 559 LMGTLKNYEKL-------VVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTKG 606 (850)
Q Consensus 559 l~e~vr~~P~s-------VvlldeiekA~~~v~~~l~q~~d~G~l~----------n~Iii~Tsn 606 (850)
+|+|++.++-. -+|||||-.-...+|..||+++.+|.|. ++=||..||
T Consensus 302 FTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATN 366 (550)
T COG3604 302 FTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATN 366 (550)
T ss_pred cccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccc
Confidence 89999988876 6999999999999999999999999984 666666666
No 171
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.88 E-value=8.9e-05 Score=83.63 Aligned_cols=155 Identities=11% Similarity=0.094 Sum_probs=95.2
Q ss_pred CCcHHHHHHHHHHHhcC-------------CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccc
Q 003070 69 SVSKEDIKLVFEVFLRK-------------KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTL 135 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr-------------~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~ 135 (850)
.|.++.++++.+.+... ..++.+|.|+||+|||.+++.++.... ..++.+..+. +
T Consensus 125 ~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~----------~~~~~v~~~~--l 192 (364)
T TIGR01242 125 GGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN----------ATFIRVVGSE--L 192 (364)
T ss_pred CChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC----------CCEEecchHH--H
Confidence 38899999988877532 234589999999999999999988753 2345443222 2
Q ss_pred cccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccC-C
Q 003070 136 RFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNS-A 214 (850)
Q Consensus 136 ~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~-~ 214 (850)
....-|+.+..++++.+..+. ..+.||||||++.+......... + .+. .+...+..+|..... .
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~----~~p~il~iDEiD~l~~~~~~~~~----~-----~~~--~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKE----KAPSIIFIDEIDAIAAKRTDSGT----S-----GDR--EVQRTLMQLLAELDGFD 257 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHh----cCCcEEEhhhhhhhccccccCCC----C-----ccH--HHHHHHHHHHHHhhCCC
Confidence 223356667777777777664 45689999999999764321110 0 011 111223444432110 1
Q ss_pred CCCeEEEEecccHHHHHhhhhcCCcccccccce-eeecCCCC
Q 003070 215 SSTRVWLMATASYQTYMKCQMRQPPLEIQWALQ-AVSIPSGG 255 (850)
Q Consensus 215 arG~lwlIGatT~eeY~K~iekdPaLEr~W~LQ-~V~Vps~~ 255 (850)
..+.+.+|+||+.-+ .-||+|-|.++|. .+.||.|+
T Consensus 258 ~~~~v~vI~ttn~~~-----~ld~al~r~grfd~~i~v~~P~ 294 (364)
T TIGR01242 258 PRGNVKVIAATNRPD-----ILDPALLRPGRFDRIIEVPLPD 294 (364)
T ss_pred CCCCEEEEEecCChh-----hCChhhcCcccCceEEEeCCcC
Confidence 246799999987553 3578887744442 45566555
No 172
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=6.1e-05 Score=84.40 Aligned_cols=116 Identities=21% Similarity=0.240 Sum_probs=80.0
Q ss_pred CCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC---c-------------------eEEe
Q 003070 486 VPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD---L-------------------LFHI 543 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~---~-------------------~i~i 543 (850)
.|||.++-..+... .||---.+||.||+|+||+.+|+++|..+.-... . +..+
T Consensus 3 yPW~~~~~~~l~~~-----~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i 77 (342)
T PRK06964 3 YPWQTDDWNRLQAL-----RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIV 77 (342)
T ss_pred CcccHHHHHHHHHh-----cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE
Confidence 48999998888874 3554556779999999999999999988764321 0 1111
Q ss_pred cCccc----------------c-CC-----CCC--chh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhc
Q 003070 544 DMRKR----------------N-DG-----VSS--HSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFE 592 (850)
Q Consensus 544 dms~~----------------~-~~-----~~~--~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d 592 (850)
..... + .+ +.. .++ .|.+.+...| |.|+++|+.|+-+..-.|.||..+|
T Consensus 78 ~p~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLE 157 (342)
T PRK06964 78 RPEALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLE 157 (342)
T ss_pred ecccccccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhc
Confidence 10000 0 00 001 234 3445554444 6799999999999999999999999
Q ss_pred cCccCceEEEEecCC
Q 003070 593 TENFGKVIFVLTKGD 607 (850)
Q Consensus 593 ~G~l~n~Iii~Tsn~ 607 (850)
+ -=.+++|||+|+.
T Consensus 158 E-Pp~~t~fiL~t~~ 171 (342)
T PRK06964 158 E-PPPGTVFLLVSAR 171 (342)
T ss_pred C-CCcCcEEEEEECC
Confidence 6 3459999998874
No 173
>CHL00181 cbbX CbbX; Provisional
Probab=97.87 E-value=5.5e-05 Score=82.90 Aligned_cols=136 Identities=10% Similarity=0.099 Sum_probs=81.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHhHH-hCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeEEE
Q 003070 89 NTVIVGDCLSITDALVFDFMGRVE-RGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIY 167 (850)
Q Consensus 89 NPVLVGe~gvgktAvVegla~rI~-~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvILf 167 (850)
|.+|.|+||+|||-+++.+++... .|-++ +.+++.+....+ -+...|+.+.+..++++.. .+| |||
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~----~~~~~~v~~~~l--~~~~~g~~~~~~~~~l~~a------~gg-VLf 127 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIK----KGHLLTVTRDDL--VGQYIGHTAPKTKEVLKKA------MGG-VLF 127 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCC----CCceEEecHHHH--HHHHhccchHHHHHHHHHc------cCC-EEE
Confidence 457889999999999999988754 34333 335666664432 2233455555555544432 233 999
Q ss_pred ecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccccccce
Q 003070 168 TGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQ 247 (850)
Q Consensus 168 IdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr~W~LQ 247 (850)
|||++.+...+.. . +-...++..+-.++.. .++.+.+|+|++.+.=.++...+|+|-+|++.
T Consensus 128 IDE~~~l~~~~~~-~------------~~~~e~~~~L~~~me~----~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~- 189 (287)
T CHL00181 128 IDEAYYLYKPDNE-R------------DYGSEAIEILLQVMEN----QRDDLVVIFAGYKDRMDKFYESNPGLSSRIAN- 189 (287)
T ss_pred EEccchhccCCCc-c------------chHHHHHHHHHHHHhc----CCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCc-
Confidence 9999998653211 0 1112233344455543 35779999987654444556678999998642
Q ss_pred eeecCCCC
Q 003070 248 AVSIPSGG 255 (850)
Q Consensus 248 ~V~Vps~~ 255 (850)
.+..|..+
T Consensus 190 ~i~F~~~t 197 (287)
T CHL00181 190 HVDFPDYT 197 (287)
T ss_pred eEEcCCcC
Confidence 34445443
No 174
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.87 E-value=4.5e-05 Score=82.22 Aligned_cols=104 Identities=19% Similarity=0.188 Sum_probs=76.1
Q ss_pred CCCchHHHHHHHHHHHHhhh-CCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhh
Q 003070 486 VPWQFDSIHSIVEVLVECKS-AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLK 564 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~-gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr 564 (850)
.+||+++-..+.=.|.-++. +...--+||.||+|.|||+||.-+|..| | .+ +++--.-.=+.|.-....||.
T Consensus 28 fiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em-g--vn-~k~tsGp~leK~gDlaaiLt~--- 100 (332)
T COG2255 28 FIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL-G--VN-LKITSGPALEKPGDLAAILTN--- 100 (332)
T ss_pred hcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh-c--CC-eEecccccccChhhHHHHHhc---
Confidence 58999998888877777665 3456788999999999999999999988 2 11 222111000111112234443
Q ss_pred hCCCEEEeeccccccCHHHHHHHHhhhccCcc
Q 003070 565 NYEKLVVLVEDIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 565 ~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l 596 (850)
=.|+.|+|+|||..-.|.|...|+-+||+-++
T Consensus 101 Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~l 132 (332)
T COG2255 101 LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRL 132 (332)
T ss_pred CCcCCeEEEehhhhcChhHHHHhhhhhhheeE
Confidence 47899999999999999999999999999875
No 175
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.87 E-value=9.9e-05 Score=85.27 Aligned_cols=154 Identities=11% Similarity=0.104 Sum_probs=96.2
Q ss_pred CcHHHHHHHHHHHhc-------------CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeeccccccc
Q 003070 70 VSKEDIKLVFEVFLR-------------KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLR 136 (850)
Q Consensus 70 gRdeeirrVieIL~R-------------r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~ 136 (850)
|.++.++.+-+.+.. ...++.+|.|+||+|||.+++.+|.... ..++.+.-+.+ .
T Consensus 187 Gl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~----------~~fi~V~~seL--~ 254 (438)
T PTZ00361 187 GLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS----------ATFLRVVGSEL--I 254 (438)
T ss_pred CHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC----------CCEEEEecchh--h
Confidence 677777766665531 2356789999999999999999988642 34555543322 3
Q ss_pred ccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCC
Q 003070 137 FMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASS 216 (850)
Q Consensus 137 ~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~ar 216 (850)
...-|+-+..+.++.+.... +.+.||||||+..+......... ++ ...+...+.++-+.|.... .+
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~kR~~~~s----gg----~~e~qr~ll~LL~~Ldg~~--~~ 320 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEE----NAPSIVFIDEIDAIGTKRYDATS----GG----EKEIQRTMLELLNQLDGFD--SR 320 (438)
T ss_pred hhhcchHHHHHHHHHHHHHh----CCCcEEeHHHHHHHhccCCCCCC----cc----cHHHHHHHHHHHHHHhhhc--cc
Confidence 34466777778888877765 46799999999999865421110 11 1123333334333333221 34
Q ss_pred CeEEEEecccHHHHHhhhhcCCcccc--cccceeeecCCCC
Q 003070 217 TRVWLMATASYQTYMKCQMRQPPLEI--QWALQAVSIPSGG 255 (850)
Q Consensus 217 G~lwlIGatT~eeY~K~iekdPaLEr--~W~LQ~V~Vps~~ 255 (850)
+.+.+|+||..-... ||+|-| ||+ ..+.+|.|+
T Consensus 321 ~~V~VI~ATNr~d~L-----DpaLlRpGRfd-~~I~~~~Pd 355 (438)
T PTZ00361 321 GDVKVIMATNRIESL-----DPALIRPGRID-RKIEFPNPD 355 (438)
T ss_pred CCeEEEEecCChHHh-----hHHhccCCeeE-EEEEeCCCC
Confidence 679999998754333 788876 443 346676665
No 176
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.86 E-value=0.00023 Score=82.67 Aligned_cols=101 Identities=11% Similarity=0.096 Sum_probs=61.1
Q ss_pred CCCCeEEEEecCCchHHHHHHHHHHHHhcC--CCCceEEecCccccCC-------CCCchhhHHHHhhhCCCEEEeeccc
Q 003070 506 AKKATWFLLQGNDTIGKRRLALSIAESVFG--STDLLFHIDMRKRNDG-------VSSHSEMLMGTLKNYEKLVVLVEDI 576 (850)
Q Consensus 506 gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfg--s~~~~i~idms~~~~~-------~~~~~~~l~e~vr~~P~sVvlldei 576 (850)
|...-+++|.|+.|+|||.|+.+++..+-. ....++++.+.++... ..+....+.+.++ ...||+||||
T Consensus 138 ~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~--~~dvLiIDDi 215 (450)
T PRK14087 138 GISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEIC--QNDVLIIDDV 215 (450)
T ss_pred CcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhc--cCCEEEEecc
Confidence 334457999999999999999999987752 3456677766553210 0011112222233 3569999999
Q ss_pred cccC--HHHHHHHHhhhccCccCceEEEEecCCC
Q 003070 577 DLAD--PQFIKILADGFETENFGKVIFVLTKGDS 608 (850)
Q Consensus 577 ekA~--~~v~~~l~q~~d~G~l~n~Iii~Tsn~~ 608 (850)
..-. ...+..|...|+.=.-.+.-||+||+..
T Consensus 216 q~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~ 249 (450)
T PRK14087 216 QFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKS 249 (450)
T ss_pred ccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCC
Confidence 7543 4455555554443333333678889854
No 177
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.85 E-value=0.0003 Score=78.76 Aligned_cols=160 Identities=13% Similarity=0.191 Sum_probs=90.1
Q ss_pred CCcHHHHHHHHHHHhc----CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCc-ccCCcEEEEeeccccc---------
Q 003070 69 SVSKEDIKLVFEVFLR----KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQ-ELKQTHVIKFHFAPVT--------- 134 (850)
Q Consensus 69 ~gRdeeirrVieIL~R----r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~-~Lkg~~visLdl~~l~--------- 134 (850)
.||++|++.+...|.. .+.+|.+|.|+||+|||++++.++..+..- .+. .+. ..++.++.....
T Consensus 18 ~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~-~~~~~~~-~~~v~in~~~~~~~~~~~~~i 95 (365)
T TIGR02928 18 VHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEA-AEDRDVR-VVTVYVNCQILDTLYQVLVEL 95 (365)
T ss_pred CCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH-hhccCCc-eEEEEEECCCCCCHHHHHHHH
Confidence 4899999999999864 345688999999999999999999877531 010 111 344544421110
Q ss_pred ---cc--cc---Chh-HHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhh
Q 003070 135 ---LR--FM---KKE-EVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVG 205 (850)
Q Consensus 135 ---~~--~~---~Rg-efE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~ 205 (850)
+. +. .++ .+++.++.+.+.+.. .+..+||+|||++.|++... . ++.++-
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~vlvIDE~d~L~~~~~----------------~---~L~~l~ 153 (365)
T TIGR02928 96 ANQLRGSGEEVPTTGLSTSEVFRRLYKELNE---RGDSLIIVLDEIDYLVGDDD----------------D---LLYQLS 153 (365)
T ss_pred HHHHhhcCCCCCCCCCCHHHHHHHHHHHHHh---cCCeEEEEECchhhhccCCc----------------H---HHHhHh
Confidence 00 00 011 233344555555543 25679999999999984221 1 122333
Q ss_pred hhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccccccceeeecCCCC
Q 003070 206 KLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 206 nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
++.... ......+-+|++++.-.++.. -+|.+.+++.-+.|..+..+
T Consensus 154 ~~~~~~-~~~~~~v~lI~i~n~~~~~~~--l~~~~~s~~~~~~i~f~p~~ 200 (365)
T TIGR02928 154 RARSNG-DLDNAKVGVIGISNDLKFREN--LDPRVKSSLCEEEIIFPPYD 200 (365)
T ss_pred cccccc-CCCCCeEEEEEEECCcchHhh--cCHHHhccCCcceeeeCCCC
Confidence 332111 112357899998754444332 34556555432345555433
No 178
>PRK09087 hypothetical protein; Validated
Probab=97.84 E-value=0.00041 Score=73.49 Aligned_cols=80 Identities=19% Similarity=0.165 Sum_probs=50.3
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhhhCCCEEEeeccccccC---HHHH
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLAD---PQFI 584 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~~P~sVvlldeiekA~---~~v~ 584 (850)
+.-++++.||.|+|||.|++++++.. ....++...+ ...+...+.. .+|+||||+... ..++
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~-----~~~~i~~~~~-------~~~~~~~~~~---~~l~iDDi~~~~~~~~~lf 107 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS-----DALLIHPNEI-------GSDAANAAAE---GPVLIEDIDAGGFDETGLF 107 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc-----CCEEecHHHc-------chHHHHhhhc---CeEEEECCCCCCCCHHHHH
Confidence 44679999999999999999998753 1223333221 1223334443 489999998642 3455
Q ss_pred HHHHhhhccCccCceEEEEecC
Q 003070 585 KILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 585 ~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
..+-...+.| ..+|+|++
T Consensus 108 ~l~n~~~~~g----~~ilits~ 125 (226)
T PRK09087 108 HLINSVRQAG----TSLLMTSR 125 (226)
T ss_pred HHHHHHHhCC----CeEEEECC
Confidence 5555555555 34777775
No 179
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.84 E-value=9.9e-05 Score=92.06 Aligned_cols=114 Identities=11% Similarity=0.172 Sum_probs=78.0
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcC-------CCCceEEecCccccCCCCCchh
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFG-------STDLLFHIDMRKRNDGVSSHSE 557 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfg-------s~~~~i~idms~~~~~~~~~~~ 557 (850)
.|+||++.|..+...+.+ .. ....+|.||+|||||.+|+.||..+.. ....++.+||+.... +..|.+
T Consensus 174 ~~igr~~ei~~~~~~l~r--~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a-~~~~~g 248 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSR--RT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIA-GAKYRG 248 (852)
T ss_pred cCCCcHHHHHHHHHHHhc--CC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhh-cchhhh
Confidence 489999988888887743 22 246678999999999999999998743 235678888775321 123433
Q ss_pred ----h---HHHHhhh-CCCEEEeeccccccC--------HHHHHHHHhhhccCccCceEEEEecC
Q 003070 558 ----M---LMGTLKN-YEKLVVLVEDIDLAD--------PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 558 ----~---l~e~vr~-~P~sVvlldeiekA~--------~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+ +.+.+++ +...||++|||+.-- .++.++|+.++..|.+ .+|.+++
T Consensus 249 ~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i---~~IgaTt 310 (852)
T TIGR03346 249 EFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGEL---HCIGATT 310 (852)
T ss_pred hHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCce---EEEEeCc
Confidence 2 2233333 346899999999432 4678888888888865 4555554
No 180
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.84 E-value=4.1e-05 Score=76.53 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=34.0
Q ss_pred CcHHHHHHHHHHHhc---CCCCCeEEEcCCCchHHHHHHHHHHhHHhC
Q 003070 70 VSKEDIKLVFEVFLR---KKRRNTVIVGDCLSITDALVFDFMGRVERG 114 (850)
Q Consensus 70 gRdeeirrVieIL~R---r~K~NPVLVGe~gvgktAvVegla~rI~~G 114 (850)
||+++++++...|.+ ...++.+|+|++|+|||.++..++.++...
T Consensus 4 gR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 4 GREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp T-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 899999999999932 357789999999999999999999998876
No 181
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.83 E-value=0.0001 Score=86.34 Aligned_cols=134 Identities=12% Similarity=0.125 Sum_probs=90.6
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeE
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAI 165 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvI 165 (850)
..+..+|.|+||+|||-+++.+|... +..++.++.+.+ -+..-|+-|.+++++.+.++. ..+.|
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~----------~~~~~~l~~~~l--~~~~vGese~~l~~~f~~A~~----~~P~I 321 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDW----------QLPLLRLDVGKL--FGGIVGESESRMRQMIRIAEA----LSPCI 321 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEEhHHh--cccccChHHHHHHHHHHHHHh----cCCcE
Confidence 34568899999999999999998863 456889988754 345678889999999998876 46899
Q ss_pred EEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccc--c
Q 003070 166 IYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEI--Q 243 (850)
Q Consensus 166 LfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr--~ 243 (850)
|||||+..+.+.....++ .+....++..+-..|.. ....+-+||||..-. .-||+|-| |
T Consensus 322 L~IDEID~~~~~~~~~~d----------~~~~~rvl~~lL~~l~~----~~~~V~vIaTTN~~~-----~Ld~allR~GR 382 (489)
T CHL00195 322 LWIDEIDKAFSNSESKGD----------SGTTNRVLATFITWLSE----KKSPVFVVATANNID-----LLPLEILRKGR 382 (489)
T ss_pred EEehhhhhhhccccCCCC----------chHHHHHHHHHHHHHhc----CCCceEEEEecCChh-----hCCHHHhCCCc
Confidence 999999998764321111 01233343333333332 235688999886432 45788876 6
Q ss_pred ccceeeecCCCC
Q 003070 244 WALQAVSIPSGG 255 (850)
Q Consensus 244 W~LQ~V~Vps~~ 255 (850)
|| ..+.||-|+
T Consensus 383 FD-~~i~v~lP~ 393 (489)
T CHL00195 383 FD-EIFFLDLPS 393 (489)
T ss_pred CC-eEEEeCCcC
Confidence 76 345555554
No 182
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.83 E-value=0.00023 Score=84.88 Aligned_cols=106 Identities=14% Similarity=0.198 Sum_probs=61.8
Q ss_pred HHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCC--CCceEEecCccccCC-----CCCchhhHHHHhhhCC
Q 003070 495 SIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGS--TDLLFHIDMRKRNDG-----VSSHSEMLMGTLKNYE 567 (850)
Q Consensus 495 ~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs--~~~~i~idms~~~~~-----~~~~~~~l~e~vr~~P 567 (850)
+.+.++... .++..-+|+|.|++|+|||.|+.+++..+... ...++++.+.++... ..+-.+.+.+.+++
T Consensus 301 aaa~avae~-~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~-- 377 (617)
T PRK14086 301 AAAVAVAEA-PAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYRE-- 377 (617)
T ss_pred HHHHHHHhC-ccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhc--
Confidence 344444432 23333468999999999999999999887532 345677776554110 00112233333333
Q ss_pred CEEEeecccccc--C----HHHHHHHHhhhccCccCceEEEEecCC
Q 003070 568 KLVVLVEDIDLA--D----PQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 568 ~sVvlldeiekA--~----~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
+.||+||||+.- . ..++++|-...+.| .-||+|||.
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~g----k~IIITSd~ 419 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNAN----KQIVLSSDR 419 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcC----CCEEEecCC
Confidence 589999999853 2 23444444444444 335668873
No 183
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.83 E-value=0.00016 Score=83.86 Aligned_cols=91 Identities=14% Similarity=0.201 Sum_probs=55.9
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCC--CCceEEecCccccC----C-CCCchhhHHHHhhhCCCEEEeecccccc--C-
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGS--TDLLFHIDMRKRND----G-VSSHSEMLMGTLKNYEKLVVLVEDIDLA--D- 580 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs--~~~~i~idms~~~~----~-~~~~~~~l~e~vr~~P~sVvlldeiekA--~- 580 (850)
+++|.||+|+|||.|+.++|..+-.. ...++.++...+.. + ..+-.+.+.+..+.+ ..|+|||||+.. .
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~-~dvLlIDDi~~l~~~~ 210 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKK-VDVLLIDDVQFLIGKT 210 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhc-CCEEEEechhhhcCcH
Confidence 59999999999999999999877432 34567776554311 0 011123344444433 459999999843 1
Q ss_pred ---HHHHHHHHhhhccCccCceEEEEecC
Q 003070 581 ---PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 581 ---~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
..++..|-...+.|+ .||+||+
T Consensus 211 ~~q~elf~~~n~l~~~~k----~iIitsd 235 (440)
T PRK14088 211 GVQTELFHTFNELHDSGK----QIVICSD 235 (440)
T ss_pred HHHHHHHHHHHHHHHcCC----eEEEECC
Confidence 234444444445443 5677776
No 184
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.83 E-value=0.00011 Score=90.21 Aligned_cols=136 Identities=13% Similarity=0.146 Sum_probs=94.4
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeE
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAI 165 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvI 165 (850)
..++.+|.|+||+|||.+++.+|... +..++.+.-+.+ -..+-|+-|..++++.+.+++ ..+.|
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~----------~~~fi~v~~~~l--~~~~vGese~~i~~~f~~A~~----~~p~i 549 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATES----------GANFIAVRGPEI--LSKWVGESEKAIREIFRKARQ----AAPAI 549 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEehHHH--hhcccCcHHHHHHHHHHHHHh----cCCEE
Confidence 44567999999999999999998863 356777765533 234568889999999998886 46799
Q ss_pred EEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccc--c
Q 003070 166 IYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEI--Q 243 (850)
Q Consensus 166 LfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr--~ 243 (850)
|||||++.|.+...... + ....+.+|.++-..|.... ..+.+.+||||..-. .-||++-| |
T Consensus 550 ifiDEid~l~~~r~~~~------~----~~~~~~~~~~lL~~ldg~~--~~~~v~vI~aTn~~~-----~ld~allRpgR 612 (733)
T TIGR01243 550 IFFDEIDAIAPARGARF------D----TSVTDRIVNQLLTEMDGIQ--ELSNVVVIAATNRPD-----ILDPALLRPGR 612 (733)
T ss_pred EEEEChhhhhccCCCCC------C----ccHHHHHHHHHHHHhhccc--CCCCEEEEEeCCChh-----hCCHhhcCCCc
Confidence 99999999987542110 0 1234555555544444221 245799999987543 46889987 7
Q ss_pred ccceeeecCCCC
Q 003070 244 WALQAVSIPSGG 255 (850)
Q Consensus 244 W~LQ~V~Vps~~ 255 (850)
|+ ..+.||-|.
T Consensus 613 fd-~~i~v~~Pd 623 (733)
T TIGR01243 613 FD-RLILVPPPD 623 (733)
T ss_pred cc-eEEEeCCcC
Confidence 76 447777666
No 185
>PRK06620 hypothetical protein; Validated
Probab=97.82 E-value=0.00053 Score=72.08 Aligned_cols=76 Identities=20% Similarity=0.223 Sum_probs=48.3
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhhhCCCEEEeeccccccC-HHHHHHHH
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLAD-PQFIKILA 588 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~~P~sVvlldeiekA~-~~v~~~l~ 588 (850)
-+++|.||.|+|||.|+++++... + ..++ ..... .. +..+ .+.++++|||+.-. ..++.++-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~-~--~~~~--~~~~~-------~~---~~~~--~~d~lliDdi~~~~~~~lf~l~N 107 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS-N--AYII--KDIFF-------NE---EILE--KYNAFIIEDIENWQEPALLHIFN 107 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc-C--CEEc--chhhh-------ch---hHHh--cCCEEEEeccccchHHHHHHHHH
Confidence 689999999999999999988764 1 1111 10000 01 1112 24799999999543 34555555
Q ss_pred hhhccCccCceEEEEecC
Q 003070 589 DGFETENFGKVIFVLTKG 606 (850)
Q Consensus 589 q~~d~G~l~n~Iii~Tsn 606 (850)
.+.|.|+ .+|+|+.
T Consensus 108 ~~~e~g~----~ilits~ 121 (214)
T PRK06620 108 IINEKQK----YLLLTSS 121 (214)
T ss_pred HHHhcCC----EEEEEcC
Confidence 5667776 5677764
No 186
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=97.80 E-value=6e-05 Score=89.09 Aligned_cols=120 Identities=11% Similarity=0.112 Sum_probs=88.8
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHh--------cCCCCceEEecCccccCC-----
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESV--------FGSTDLLFHIDMRKRNDG----- 551 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~l--------fgs~~~~i~idms~~~~~----- 551 (850)
.++|+..++..+-+.+.+.- +.+..+|+.|++|+||+.+|++|-..+ ......|+.|||....+.
T Consensus 220 ~iiG~S~~m~~~~~~i~~~A--~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~llese 297 (538)
T PRK15424 220 DLLGQSPQMEQVRQTILLYA--RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAE 297 (538)
T ss_pred heeeCCHHHHHHHHHHHHHh--CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHH
Confidence 38999999999888887543 346789999999999999999998873 335678999999865221
Q ss_pred CCCch-hhHHHHhh--------hCCCEEEeeccccccCHHHHHHHHhhhccCccC----------ceEEEEecC
Q 003070 552 VSSHS-EMLMGTLK--------NYEKLVVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTKG 606 (850)
Q Consensus 552 ~~~~~-~~l~e~vr--------~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~----------n~Iii~Tsn 606 (850)
--||. |.+|.+-+ .--...+|||||+...+.+|..|+++|++|.+. |+=||.+||
T Consensus 298 LFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~ 371 (538)
T PRK15424 298 LFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATH 371 (538)
T ss_pred hcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecC
Confidence 00111 12333321 122458999999999999999999999999863 556777776
No 187
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=97.79 E-value=9.5e-05 Score=65.58 Aligned_cols=73 Identities=11% Similarity=0.206 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHHHHHccCCceEEEeCHHHHHHHHhcc--CCcchhHHHHHHHHHHhhHHHHHHhCCCC-CCceEE
Q 003070 745 KITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGS--GFFHNSLFEKWLKEVFQTSLEAVKIGGKG-GGIEIR 819 (850)
Q Consensus 745 ~l~~~i~~~~~~~~~~~l~~~~~~~l~vd~~~~e~l~~~~--~~~~~r~le~wie~vl~~~l~~~~~~g~~-~~~~v~ 819 (850)
.+.+++.. ..+.+.+++... ++.|+++++++++|+..+ ..+|+|++++||++.+.++|++..+.|+. .+..|+
T Consensus 5 ~l~~I~~~-~l~~l~~~l~~~-~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~v~ 80 (81)
T PF10431_consen 5 DLEKIADL-QLKKLNERLKEK-GIELEFDDAVVDYLAEKGYDPEYGARPLRRIIEREIEPPLADAILSGKIKEGDTVR 80 (81)
T ss_dssp HHHHHHHS-HHHHHHHHHHHT-TEEEEE-HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCSCTTCEEE
T ss_pred HHHHHHHH-HHHHHHHHHHHC-CCeEEecHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcCEee
Confidence 45444444 445677777665 499999999999999987 45899999999999999999999999885 454554
No 188
>PRK06526 transposase; Provisional
Probab=97.79 E-value=2.1e-05 Score=84.64 Aligned_cols=93 Identities=11% Similarity=0.203 Sum_probs=62.1
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC-----CCCCchhhHHHHhhh-CCCEEEeecccccc--CH
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND-----GVSSHSEMLMGTLKN-YEKLVVLVEDIDLA--DP 581 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~-----~~~~~~~~l~e~vr~-~P~sVvlldeiekA--~~ 581 (850)
..++|+||+|+|||.||.+|+..+.......+.+.+.+..+ ...+ .+...+++ ..+.||+|||+... ++
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~---~~~~~l~~l~~~dlLIIDD~g~~~~~~ 175 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAG---RLQAELVKLGRYPLLIVDEVGYIPFEP 175 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcC---cHHHHHHHhccCCEEEEcccccCCCCH
Confidence 47899999999999999999988765444444444443210 0111 22222222 34689999999865 68
Q ss_pred HHHHHHHhhhccCccCceEEEEecC
Q 003070 582 QFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 582 ~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
...+.|.++++.- ..+.-+|+|||
T Consensus 176 ~~~~~L~~li~~r-~~~~s~IitSn 199 (254)
T PRK06526 176 EAANLFFQLVSSR-YERASLIVTSN 199 (254)
T ss_pred HHHHHHHHHHHHH-HhcCCEEEEcC
Confidence 8888999988753 23344778898
No 189
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=9.8e-05 Score=86.53 Aligned_cols=95 Identities=15% Similarity=0.205 Sum_probs=69.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchh-------hHHHHhhhCCCEEEeecccccc
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSE-------MLMGTLKNYEKLVVLVEDIDLA 579 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~-------~l~e~vr~~P~sVvlldeiekA 579 (850)
++..-+||.||+|+|||.||+++|... .-.|++++++++.. .|+| .+-+..++..-+||||||||+-
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~~l~s---k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~ 347 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGSELLS---KWVGESEKNIRELFEKARKLAPSIIFIDEIDSL 347 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCHHHhc---cccchHHHHHHHHHHHHHcCCCcEEEEEchhhh
Confidence 455689999999999999999999854 68999999987632 2333 3333345566679999999973
Q ss_pred ----C-------HHHHHHHHhhhcc-CccCceEEEEecCC
Q 003070 580 ----D-------PQFIKILADGFET-ENFGKVIFVLTKGD 607 (850)
Q Consensus 580 ----~-------~~v~~~l~q~~d~-G~l~n~Iii~Tsn~ 607 (850)
+ ..+.+-|+..++. ....+.++|.|+|.
T Consensus 348 ~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~ 387 (494)
T COG0464 348 ASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNR 387 (494)
T ss_pred hccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCC
Confidence 1 2577777777763 33568888998884
No 190
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.77 E-value=6.5e-05 Score=88.58 Aligned_cols=130 Identities=12% Similarity=0.097 Sum_probs=86.2
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHhh-----hC---CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 475 RSDLYKVLQENVPWQFDSIHSIVEVLVECK-----SA---KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 475 l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r-----~g---k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
+..|.+.+...|.||+.+-.+|+-++.-.- .| +.+..+|+.|++|+|||.+|+.++...-.. .++...+.
T Consensus 194 ~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~--~~~~~~~~ 271 (509)
T smart00350 194 YERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA--VYTTGKGS 271 (509)
T ss_pred HHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc--eEcCCCCC
Confidence 567888899999999998666666655321 11 345699999999999999999999976322 23221111
Q ss_pred c---ccC----CC-CCchhhHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCcc------------CceEEEEecC
Q 003070 547 K---RND----GV-SSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENF------------GKVIFVLTKG 606 (850)
Q Consensus 547 ~---~~~----~~-~~~~~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l------------~n~Iii~Tsn 606 (850)
. ... .+ .|-...-.+++-.--.-++++||++++.+..|..|+++|++|.+ .++-||.|+|
T Consensus 272 ~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~N 351 (509)
T smart00350 272 SAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAAN 351 (509)
T ss_pred CcCCccccceEccCcceEEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeC
Confidence 0 000 00 00000001122222235999999999999999999999999984 2778888888
No 191
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.77 E-value=0.00016 Score=82.75 Aligned_cols=138 Identities=10% Similarity=0.088 Sum_probs=89.5
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeE
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAI 165 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvI 165 (850)
..++.+|.|+||+|||.+++.+|... +..++.+.-+.+ ....-|+-+..+.++...++. ..+.|
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l----------~~~fi~i~~s~l--~~k~~ge~~~~lr~lf~~A~~----~~P~I 241 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHT----------TATFIRVVGSEF--VQKYLGEGPRMVRDVFRLARE----NAPSI 241 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEehHHH--HHHhcchhHHHHHHHHHHHHh----cCCeE
Confidence 35789999999999999999998753 345666643322 223356777788888888775 46789
Q ss_pred EEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccc--c
Q 003070 166 IYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEI--Q 243 (850)
Q Consensus 166 LfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr--~ 243 (850)
|||||+..+.+...... .+ ....+..+++++-+.+.... ..+.+.+|+||..-+ .-||+|-| |
T Consensus 242 LfIDEID~i~~~r~~~~-----~~---~d~~~~r~l~~LL~~ld~~~--~~~~v~VI~aTN~~d-----~LDpAllR~GR 306 (398)
T PTZ00454 242 IFIDEVDSIATKRFDAQ-----TG---ADREVQRILLELLNQMDGFD--QTTNVKVIMATNRAD-----TLDPALLRPGR 306 (398)
T ss_pred EEEECHhhhcccccccc-----CC---ccHHHHHHHHHHHHHhhccC--CCCCEEEEEecCCch-----hCCHHHcCCCc
Confidence 99999999976432100 01 01134455555555554322 345689999987532 56888877 5
Q ss_pred ccceeeecCCCC
Q 003070 244 WALQAVSIPSGG 255 (850)
Q Consensus 244 W~LQ~V~Vps~~ 255 (850)
++ ..+.+|-|+
T Consensus 307 fd-~~I~~~~P~ 317 (398)
T PTZ00454 307 LD-RKIEFPLPD 317 (398)
T ss_pred cc-EEEEeCCcC
Confidence 55 345666555
No 192
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.76 E-value=0.00013 Score=81.86 Aligned_cols=95 Identities=12% Similarity=0.065 Sum_probs=66.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchh--------hHHHHh-----hhCCCEEEee
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSE--------MLMGTL-----KNYEKLVVLV 573 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~--------~l~e~v-----r~~P~sVvll 573 (850)
++--=+++.||.|+|||.+|+++|..+ .-.+|.++.++-.. .|+| .+.+|- +.+| +||||
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el---g~~~i~vsa~eL~s---k~vGEsEk~IR~~F~~A~~~a~~~~aP-cVLFI 218 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAGELES---ENAGEPGKLIRQRYREAADIIKKKGKM-SCLFI 218 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHHHhhc---CcCCcHHHHHHHHHHHHHHHhhccCCC-eEEEE
Confidence 555567789999999999999999998 46789999887432 2333 333331 2345 79999
Q ss_pred ccccccCH------------HHHHHHHhhhcc-------Cc------cCceEEEEecCCC
Q 003070 574 EDIDLADP------------QFIKILADGFET-------EN------FGKVIFVLTKGDS 608 (850)
Q Consensus 574 deiekA~~------------~v~~~l~q~~d~-------G~------l~n~Iii~Tsn~~ 608 (850)
||||..-+ .|...|+..+|. |. ....+||.|+|..
T Consensus 219 DEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrp 278 (413)
T PLN00020 219 NDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDF 278 (413)
T ss_pred ehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCc
Confidence 99996432 223567777763 32 4578999999953
No 193
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.0002 Score=83.94 Aligned_cols=150 Identities=16% Similarity=0.158 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHhcCCC-------C---CeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChh
Q 003070 72 KEDIKLVFEVFLRKKR-------R---NTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKE 141 (850)
Q Consensus 72 deeirrVieIL~Rr~K-------~---NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~Rg 141 (850)
.+.++..++.+..+.. + --+|.|.||.|||.+++.+|. .-+.+|++++.+.+ -+..=|
T Consensus 251 k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~----------~~~~~fi~v~~~~l--~sk~vG 318 (494)
T COG0464 251 KEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL----------ESRSRFISVKGSEL--LSKWVG 318 (494)
T ss_pred HHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh----------hCCCeEEEeeCHHH--hccccc
Confidence 4666777777765422 2 356999999999999999987 45689999998743 355589
Q ss_pred HHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEE
Q 003070 142 EVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWL 221 (850)
Q Consensus 142 efE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwl 221 (850)
|.|.+++++...+++ ..+.||||||+..+........ .++.+.+|.++-..+... + ....+.+
T Consensus 319 esek~ir~~F~~A~~----~~p~iiFiDEiDs~~~~r~~~~-----------~~~~~r~~~~lL~~~d~~-e-~~~~v~v 381 (494)
T COG0464 319 ESEKNIRELFEKARK----LAPSIIFIDEIDSLASGRGPSE-----------DGSGRRVVGQLLTELDGI-E-KAEGVLV 381 (494)
T ss_pred hHHHHHHHHHHHHHc----CCCcEEEEEchhhhhccCCCCC-----------chHHHHHHHHHHHHhcCC-C-ccCceEE
Confidence 999999999999996 4689999999999998764211 123356776666665422 2 2345889
Q ss_pred EecccHHHHHhhhhcCCcccc--cccceeeecCCCCc
Q 003070 222 MATASYQTYMKCQMRQPPLEI--QWALQAVSIPSGGL 256 (850)
Q Consensus 222 IGatT~eeY~K~iekdPaLEr--~W~LQ~V~Vps~~~ 256 (850)
||||..-.. -|||+-| ||+ -.+.||.|+.
T Consensus 382 i~aTN~p~~-----ld~a~lR~gRfd-~~i~v~~pd~ 412 (494)
T COG0464 382 IAATNRPDD-----LDPALLRPGRFD-RLIYVPLPDL 412 (494)
T ss_pred EecCCCccc-----cCHhhcccCccc-eEeecCCCCH
Confidence 999986554 4688888 765 4566666664
No 194
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.72 E-value=0.00047 Score=78.08 Aligned_cols=157 Identities=10% Similarity=0.084 Sum_probs=91.1
Q ss_pred CCCcHHHHHHHHHHHhcC----CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeeccccc---------
Q 003070 68 ASVSKEDIKLVFEVFLRK----KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVT--------- 134 (850)
Q Consensus 68 ~~gRdeeirrVieIL~Rr----~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~--------- 134 (850)
+.||++|++.+...|..- +-.|.+|.|.||+|||+++..+++.+.... .+..++.++.....
T Consensus 32 l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-----~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 32 LPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-----VKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-----CCcEEEEEECCcCCCHHHHHHHH
Confidence 348999999999998432 346889999999999999999999876532 23455555432110
Q ss_pred ---ccc--c-Chh-HHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhh
Q 003070 135 ---LRF--M-KKE-EVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKL 207 (850)
Q Consensus 135 ---~~~--~-~Rg-efE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nL 207 (850)
+.+ . .++ .+++-+..+.+.++. .+..+||+|||++.+..... .+. +..+.++
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~viviDE~d~l~~~~~--------------~~~----l~~l~~~ 165 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDE---RDRVLIVALDDINYLFEKEG--------------NDV----LYSLLRA 165 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCHhHhhccCC--------------chH----HHHHHHh
Confidence 011 0 111 233344444455443 25579999999999983110 012 1223344
Q ss_pred cccccCCCCCeEEEEecccHHHHHhhhhcCCcccccccceeeecCCCC
Q 003070 208 VSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 208 Lkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
+... ...++-+|++++....+.. -+|.+..++.-+.|..+...
T Consensus 166 ~~~~---~~~~v~vI~i~~~~~~~~~--l~~~~~s~~~~~~i~f~py~ 208 (394)
T PRK00411 166 HEEY---PGARIGVIGISSDLTFLYI--LDPRVKSVFRPEEIYFPPYT 208 (394)
T ss_pred hhcc---CCCeEEEEEEECCcchhhh--cCHHHHhcCCcceeecCCCC
Confidence 3321 1226888888765444432 35555555443455555433
No 195
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.71 E-value=8.3e-05 Score=92.65 Aligned_cols=115 Identities=13% Similarity=0.162 Sum_probs=81.5
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCC-------CCceEEecCccccCCCCCch
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGS-------TDLLFHIDMRKRNDGVSSHS 556 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs-------~~~~i~idms~~~~~~~~~~ 556 (850)
+-|+||++-|..+.+.+.+. . ....+|.||+|||||.+|+.||..+... ...++.+||+.-. .+..|.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~--~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~-ag~~~~ 252 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR--T--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV-AGAKYR 252 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC--C--cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhh-hccchh
Confidence 45899999888887776542 2 2467899999999999999999988542 3577888887632 122344
Q ss_pred h----hHH---HHhh-hCCCEEEeeccccccC--------HHHHHHHHhhhccCccCceEEEEecC
Q 003070 557 E----MLM---GTLK-NYEKLVVLVEDIDLAD--------PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 557 ~----~l~---e~vr-~~P~sVvlldeiekA~--------~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
| +|. +.+. .....|+|+|||+.-. .+..++|+.++.+|.+ .+|.+++
T Consensus 253 g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l---~~IgaTt 315 (857)
T PRK10865 253 GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGEL---HCVGATT 315 (857)
T ss_pred hhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCC---eEEEcCC
Confidence 3 222 2232 3456799999998532 3579999999999976 5666666
No 196
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.69 E-value=0.0001 Score=85.15 Aligned_cols=123 Identities=11% Similarity=0.179 Sum_probs=95.5
Q ss_pred HhccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC----C-CCCc-
Q 003070 482 LQENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND----G-VSSH- 555 (850)
Q Consensus 482 L~~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~----~-~~~~- 555 (850)
....++|+..++..+=+.|.+. ...+...|+.|.+|+||.-+|++|=+.==-....||.|+|...-+ + ==||
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv--A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhe 216 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV--APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHE 216 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH--hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhccc
Confidence 4567899999999988887654 345789999999999999999999877655677999999986411 0 0011
Q ss_pred hhhHHHHhhhCCC-------EEEeeccccccCHHHHHHHHhhhccCccC----------ceEEEEecC
Q 003070 556 SEMLMGTLKNYEK-------LVVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTKG 606 (850)
Q Consensus 556 ~~~l~e~vr~~P~-------sVvlldeiekA~~~v~~~l~q~~d~G~l~----------n~Iii~Tsn 606 (850)
-|-+|+|..++.- -.+|||||+.-..++|..|++++++|.|. |+=||.+||
T Consensus 217 kGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~ 284 (464)
T COG2204 217 KGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATN 284 (464)
T ss_pred ccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecC
Confidence 1345666555544 38999999999999999999999999984 666888887
No 197
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.67 E-value=0.00017 Score=79.81 Aligned_cols=98 Identities=14% Similarity=0.095 Sum_probs=65.1
Q ss_pred CCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC------CCCCchhhHHHHhhhCCCEEEeecccc--
Q 003070 506 AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------GVSSHSEMLMGTLKNYEKLVVLVEDID-- 577 (850)
Q Consensus 506 gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~------~~~~~~~~l~e~vr~~P~sVvlldeie-- 577 (850)
|+..-.++|.||+|+|||.||.+||..+.......+.+.+.++.. ...+ ...+.+.+++ ..|++||||-
T Consensus 153 ~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~-~~~~l~~l~~--~dlLiIDDiG~e 229 (306)
T PRK08939 153 GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGS-VKEKIDAVKE--APVLMLDDIGAE 229 (306)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCc-HHHHHHHhcC--CCEEEEecCCCc
Confidence 434467999999999999999999998875555555555554310 1112 2334444544 4699999994
Q ss_pred ccCHHHHHHHHhhhccCcc-CceEEEEecC
Q 003070 578 LADPQFIKILADGFETENF-GKVIFVLTKG 606 (850)
Q Consensus 578 kA~~~v~~~l~q~~d~G~l-~n~Iii~Tsn 606 (850)
...+.+..-|+..|-+.|. .+-=.|+|||
T Consensus 230 ~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 230 QMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred cccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 5666666556666545553 4566778999
No 198
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.67 E-value=0.00083 Score=77.10 Aligned_cols=89 Identities=16% Similarity=0.227 Sum_probs=65.9
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCC-----CC-chhhHHHH-------hhhCCCEEEeec
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGV-----SS-HSEMLMGT-------LKNYEKLVVLVE 574 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~-----~~-~~~~l~e~-------vr~~P~sVvlld 574 (850)
....+++.|.+|+||+.+|++|-..-......||.+|+....+.. -| ..+.++.+ +.+--..+++||
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld 240 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEe
Confidence 456788899999999999999998888788899999998642100 00 00111111 122224589999
Q ss_pred cccccCHHHHHHHHhhhccCcc
Q 003070 575 DIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 575 eiekA~~~v~~~l~q~~d~G~l 596 (850)
|||..++.+|..|++.+++|.+
T Consensus 241 ei~~l~~~~q~~l~~~l~~~~~ 262 (441)
T PRK10365 241 EIGDISPMMQVRLLRAIQEREV 262 (441)
T ss_pred ccccCCHHHHHHHHHHHccCcE
Confidence 9999999999999999999986
No 199
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.63 E-value=0.00017 Score=80.55 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=67.2
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC----C-CCCchh--hHHHHhhhCCCEEEeeccc--cccC
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND----G-VSSHSE--MLMGTLKNYEKLVVLVEDI--DLAD 580 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~----~-~~~~~~--~l~e~vr~~P~sVvlldei--ekA~ 580 (850)
.+++|.||+|+|||.||.++|..+......++.+.+.+... . .....+ ...+.+.+ ..|++|||+ +..+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~--~DLLIIDDlG~e~~t 261 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLIN--CDLLIIDDLGTEKIT 261 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhcc--CCEEEEeccCCCCCC
Confidence 78999999999999999999998887777777777654311 0 000001 11233332 369999999 7778
Q ss_pred HHHHHHHHhhhccCccCceEEEEecC
Q 003070 581 PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 581 ~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+..+..|.++|+.-.-.+.-+|+|||
T Consensus 262 ~~~~~~Lf~iin~R~~~~k~tIiTSN 287 (329)
T PRK06835 262 EFSKSELFNLINKRLLRQKKMIISTN 287 (329)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 88888888888876554455678899
No 200
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.62 E-value=7.9e-05 Score=76.05 Aligned_cols=95 Identities=18% Similarity=0.214 Sum_probs=62.4
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccc-----cCCCCCchhhHHHHhhhCCCEEEeeccccc--cCH
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR-----NDGVSSHSEMLMGTLKNYEKLVVLVEDIDL--ADP 581 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~-----~~~~~~~~~~l~e~vr~~P~sVvlldeiek--A~~ 581 (850)
..+++|.||+|+|||.||.++|..+.........+++.+. .....+-...+...+.+- .|++|||+-. ...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~--dlLilDDlG~~~~~~ 124 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRV--DLLILDDLGYEPLSE 124 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTS--SCEEEETCTSS---H
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccc--cEecccccceeeecc
Confidence 3589999999999999999999888776667777776642 111112234455666653 6788999975 456
Q ss_pred HHHHHHHhhhccCccCceEEEEecC
Q 003070 582 QFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 582 ~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
...+.|.++|+.-.=+.. .|+|||
T Consensus 125 ~~~~~l~~ii~~R~~~~~-tIiTSN 148 (178)
T PF01695_consen 125 WEAELLFEIIDERYERKP-TIITSN 148 (178)
T ss_dssp HHHHCTHHHHHHHHHT-E-EEEEES
T ss_pred cccccchhhhhHhhcccC-eEeeCC
Confidence 677888888877443333 455999
No 201
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.62 E-value=0.00017 Score=88.85 Aligned_cols=132 Identities=10% Similarity=0.024 Sum_probs=92.0
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHhhh-----C------------CCCeEEEEecCCchHHHHHHHHHHHHhc---
Q 003070 475 RSDLYKVLQENVPWQFDSIHSIVEVLVECKS-----A------------KKATWFLLQGNDTIGKRRLALSIAESVF--- 534 (850)
Q Consensus 475 l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~-----g------------k~~~~~lf~Gp~gvGKt~lA~~LA~~lf--- 534 (850)
+..|.+.+.-.|.|++++-.+|+-++.-.-. | |.+.++|+.|.+|+||+.||+.++..--
T Consensus 441 ~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ 520 (915)
T PTZ00111 441 YRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSI 520 (915)
T ss_pred HHHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccc
Confidence 5677888888999999999888777754321 1 4467999999999999999999998532
Q ss_pred -CCCCceEEecCccccC---CCCCchhhHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCcc------------Cc
Q 003070 535 -GSTDLLFHIDMRKRND---GVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENF------------GK 598 (850)
Q Consensus 535 -gs~~~~i~idms~~~~---~~~~~~~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l------------~n 598 (850)
-+...++.+++..... ...|-...=.+++-.--.-+++||||++..+..|..|+++|+++.+ .+
T Consensus 521 ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar 600 (915)
T PTZ00111 521 YTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAE 600 (915)
T ss_pred cCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCC
Confidence 2224455555443211 0001000001122222234899999999999999999999999985 28
Q ss_pred eEEEEecC
Q 003070 599 VIFVLTKG 606 (850)
Q Consensus 599 ~Iii~Tsn 606 (850)
+-||.|+|
T Consensus 601 ~rVIAAaN 608 (915)
T PTZ00111 601 TAILASCN 608 (915)
T ss_pred eEEEEEcC
Confidence 89999999
No 202
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.61 E-value=0.00012 Score=69.23 Aligned_cols=88 Identities=14% Similarity=0.271 Sum_probs=65.2
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCC-----CCceEEecCccccC--------------CCCC------chhhHHHHh
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGS-----TDLLFHIDMRKRND--------------GVSS------HSEMLMGTL 563 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs-----~~~~i~idms~~~~--------------~~~~------~~~~l~e~v 563 (850)
...+++.||+|+|||.+++.+++.+... ...++.+++..... ..++ ..+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4678899999999999999999987532 46677777664321 1111 224788889
Q ss_pred hhCCCEEEeecccccc-CHHHHHHHHhhhccCcc
Q 003070 564 KNYEKLVVLVEDIDLA-DPQFIKILADGFETENF 596 (850)
Q Consensus 564 r~~P~sVvlldeiekA-~~~v~~~l~q~~d~G~l 596 (850)
+++...||+|||++.. ...+++.|.+.++...+
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~ 117 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNI 117 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBE
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCC
Confidence 9998899999999999 99999999999894444
No 203
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0039 Score=74.30 Aligned_cols=83 Identities=16% Similarity=0.073 Sum_probs=56.1
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeE
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAI 165 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvI 165 (850)
+-.|-+|-|.+|.|||-+|+.+++-..+.. -+||.-.|=+.+ +|.==+++..++..|-+.+..-++-|
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~------~~hv~~v~Cs~l------~~~~~e~iQk~l~~vfse~~~~~PSi 497 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDL------IAHVEIVSCSTL------DGSSLEKIQKFLNNVFSEALWYAPSI 497 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhcccc------ceEEEEEechhc------cchhHHHHHHHHHHHHHHHHhhCCcE
Confidence 367889999999999999999998887431 234444443322 22223456666655544333456899
Q ss_pred EEecchhhhhcCCcc
Q 003070 166 IYTGDLKWTVDQQES 180 (850)
Q Consensus 166 LfIdELh~lvgag~~ 180 (850)
+++|||+-|+++...
T Consensus 498 IvLDdld~l~~~s~~ 512 (952)
T KOG0735|consen 498 IVLDDLDCLASASSN 512 (952)
T ss_pred EEEcchhhhhccCcc
Confidence 999999999995443
No 204
>PRK06921 hypothetical protein; Provisional
Probab=97.59 E-value=9.3e-05 Score=80.25 Aligned_cols=96 Identities=14% Similarity=0.178 Sum_probs=60.2
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCC-CCceEEecCccc-cCCCCCchhhH---HHHhhhCCCEEEeeccccc----
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGS-TDLLFHIDMRKR-NDGVSSHSEML---MGTLKNYEKLVVLVEDIDL---- 578 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs-~~~~i~idms~~-~~~~~~~~~~l---~e~vr~~P~sVvlldeiek---- 578 (850)
...|++|.||+|+|||.||.++|..+... ....+.+...+. +.-...+ +.+ .+.++ -..||+|||+.+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~~--~~dlLiIDDl~~~~~g 192 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRMK--KVEVLFIDDLFKPVNG 192 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHhc--CCCEEEEeccccccCC
Confidence 35799999999999999999999988754 455666654432 1000001 212 22232 357999999933
Q ss_pred ---cCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 579 ---ADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 579 ---A~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+....+..|.++++.=.-.+.-+|+|||
T Consensus 193 ~e~~t~~~~~~lf~iin~R~~~~k~tIitsn 223 (266)
T PRK06921 193 KPRATEWQIEQMYSVLNYRYLNHKPILISSE 223 (266)
T ss_pred CccCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 4444555666766554333344577999
No 205
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.58 E-value=0.0034 Score=67.12 Aligned_cols=83 Identities=11% Similarity=0.138 Sum_probs=50.8
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcccc-------------CCCCCc-----hhh----HHHHhhhC
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRN-------------DGVSSH-----SEM----LMGTLKNY 566 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~-------------~~~~~~-----~~~----l~e~vr~~ 566 (850)
.+.+++.||.|+|||++++.++..+-...-..+.+.....+ ....+. ... +......+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 46889999999999999999998875221111111111110 001111 112 33334455
Q ss_pred CCEEEeeccccccCHHHHHHHHhhh
Q 003070 567 EKLVVLVEDIDLADPQFIKILADGF 591 (850)
Q Consensus 567 P~sVvlldeiekA~~~v~~~l~q~~ 591 (850)
...||++||++..++..+..|....
T Consensus 123 ~~~vliiDe~~~l~~~~~~~l~~l~ 147 (269)
T TIGR03015 123 KRALLVVDEAQNLTPELLEELRMLS 147 (269)
T ss_pred CCeEEEEECcccCCHHHHHHHHHHh
Confidence 5679999999999988888776543
No 206
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.00038 Score=76.31 Aligned_cols=102 Identities=15% Similarity=0.132 Sum_probs=71.3
Q ss_pred hCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCce--------EEecCccccCCCC---Cchh---hHHHHhhhCCC--
Q 003070 505 SAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLL--------FHIDMRKRNDGVS---SHSE---MLMGTLKNYEK-- 568 (850)
Q Consensus 505 ~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~--------i~idms~~~~~~~---~~~~---~l~e~vr~~P~-- 568 (850)
.||---.+||.||+|+||+.+|.++|..++.....- .+=|.-.....+. -.++ .|-+.+...|+
T Consensus 15 ~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~ 94 (290)
T PRK05917 15 DQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYES 94 (290)
T ss_pred cCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCC
Confidence 455445677999999999999999999998643110 0011100000111 1344 35566666665
Q ss_pred --EEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 569 --LVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 569 --sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.|+++|++|+-+...+|.|+..+|+ --.|++|||+|+.
T Consensus 95 ~~kv~ii~~ad~mt~~AaNaLLK~LEE-Pp~~~~fiL~~~~ 134 (290)
T PRK05917 95 PYKIYIIHEADRMTLDAISAFLKVLED-PPQHGVIILTSAK 134 (290)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhhc-CCCCeEEEEEeCC
Confidence 8999999999999999999999999 4459999998884
No 207
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.54 E-value=0.00025 Score=85.99 Aligned_cols=91 Identities=18% Similarity=0.212 Sum_probs=63.2
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCC----CCchhhHHHHhhhCCCEEEeecccccc--------
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGV----SSHSEMLMGTLKNYEKLVVLVEDIDLA-------- 579 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~----~~~~~~l~e~vr~~P~sVvlldeiekA-------- 579 (850)
+||.||+|+|||.+|++||..+ ...|+.++.+.+.+.- ...+..+-+..++++.+||||||||..
T Consensus 188 ill~G~~G~GKt~~~~~~a~~~---~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~ 264 (644)
T PRK10733 188 VLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGL 264 (644)
T ss_pred EEEECCCCCCHHHHHHHHHHHc---CCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCC
Confidence 8899999999999999999877 4578888877653211 112223444456666689999999985
Q ss_pred ---CH---HHHHHHHhhhccCcc--CceEEEEecC
Q 003070 580 ---DP---QFIKILADGFETENF--GKVIFVLTKG 606 (850)
Q Consensus 580 ---~~---~v~~~l~q~~d~G~l--~n~Iii~Tsn 606 (850)
+. .+.+.|+..|| |.. .+.|||.|+|
T Consensus 265 ~g~~~~~~~~ln~lL~~md-g~~~~~~vivIaaTN 298 (644)
T PRK10733 265 GGGHDEREQTLNQMLVEMD-GFEGNEGIIVIAATN 298 (644)
T ss_pred CCCchHHHHHHHHHHHhhh-cccCCCCeeEEEecC
Confidence 21 24555655555 322 2689999999
No 208
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.54 E-value=0.00017 Score=74.23 Aligned_cols=142 Identities=15% Similarity=0.205 Sum_probs=80.6
Q ss_pred CcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCC-C---cccCCcEE---EEe----------e--c
Q 003070 70 VSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDV-P---QELKQTHV---IKF----------H--F 130 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~V-P---~~Lkg~~v---isL----------d--l 130 (850)
||++|++++.++|.+...+..+|.|..|+|||.++..++..+..... . ..+..... ..+ . +
T Consensus 3 gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (234)
T PF01637_consen 3 GREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEAL 82 (234)
T ss_dssp S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHH
T ss_pred CHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 79999999999998766677888899999999999999999854321 1 11111100 000 0 0
Q ss_pred c----cccc---cccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHH
Q 003070 131 A----PVTL---RFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSE 203 (850)
Q Consensus 131 ~----~l~~---~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~E 203 (850)
+ ...+ ...........+..+.+.+... +..+||+|||++++. .+.. .....+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~iiviDe~~~~~-~~~~---------------~~~~~~~~ 143 (234)
T PF01637_consen 83 GISIPSITLEKISKDLSEDSFSALERLLEKLKKK---GKKVIIVIDEFQYLA-IASE---------------EDKDFLKS 143 (234)
T ss_dssp HHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHC---HCCEEEEEETGGGGG-BCTT---------------TTHHHHHH
T ss_pred hhhcccccchhhhhcchhhHHHHHHHHHHHHHhc---CCcEEEEEecHHHHh-hccc---------------chHHHHHH
Confidence 0 0000 0012355677788888888762 445999999999999 3211 12223445
Q ss_pred hhhhcccccCCCCCeEEEEecccHHHHHh
Q 003070 204 VGKLVSDCNSASSTRVWLMATASYQTYMK 232 (850)
Q Consensus 204 l~nLLkp~l~~arG~lwlIGatT~eeY~K 232 (850)
+.+++.... +...+.+|-++|...++.
T Consensus 144 l~~~~~~~~--~~~~~~~v~~~S~~~~~~ 170 (234)
T PF01637_consen 144 LRSLLDSLL--SQQNVSIVITGSSDSLME 170 (234)
T ss_dssp HHHHHHH------TTEEEEEEESSHHHHH
T ss_pred HHHHHhhcc--ccCCceEEEECCchHHHH
Confidence 666666422 345677777766555554
No 209
>PRK08181 transposase; Validated
Probab=97.54 E-value=0.00012 Score=79.50 Aligned_cols=94 Identities=15% Similarity=0.172 Sum_probs=62.2
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC-----CCCCchhhHHHHhhhCCCEEEeecccccc--CHH
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND-----GVSSHSEMLMGTLKNYEKLVVLVEDIDLA--DPQ 582 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~-----~~~~~~~~l~e~vr~~P~sVvlldeiekA--~~~ 582 (850)
..++|+||+|+|||.||.+||..+......++.+.+.+.-. ...+-.+.+-+.+. -+.|++|||+... +..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~~~~ 184 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTKDQA 184 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccCCHH
Confidence 36999999999999999999988876656666666654210 00111222333333 3569999999754 456
Q ss_pred HHHHHHhhhccCccCceEEEEecC
Q 003070 583 FIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 583 v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.+..|.++|+. +..+.=+|+|||
T Consensus 185 ~~~~Lf~lin~-R~~~~s~IiTSN 207 (269)
T PRK08181 185 ETSVLFELISA-RYERRSILITAN 207 (269)
T ss_pred HHHHHHHHHHH-HHhCCCEEEEcC
Confidence 66788888873 333344677888
No 210
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.53 E-value=0.00012 Score=80.90 Aligned_cols=131 Identities=12% Similarity=0.108 Sum_probs=79.1
Q ss_pred CCCchHHHHHHHHHHHHhhh-CCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHH---
Q 003070 486 VPWQFDSIHSIVEVLVECKS-AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMG--- 561 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~-gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e--- 561 (850)
++||++++.. +.+++.-- .-..-+++|+||.|+|||.||+.||..-=...-.||.+.-.... -.-.-+.+..
T Consensus 140 yvGQ~hlv~q--~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~--t~dvR~ife~aq~ 215 (554)
T KOG2028|consen 140 YVGQSHLVGQ--DGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK--TNDVRDIFEQAQN 215 (554)
T ss_pred hcchhhhcCc--chHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc--hHHHHHHHHHHHH
Confidence 4788888766 33333221 13357999999999999999999998754333335555322210 0001111111
Q ss_pred -HhhhCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC-CCchhhhhhhhccccc
Q 003070 562 -TLKNYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG-DSSNYEERIENQDSVI 622 (850)
Q Consensus 562 -~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn-~~~~~~e~~~~~~~~~ 622 (850)
..-.+-..|+|+|||..=...-|+.||-.+|+|.+ ++|=.|+. .+..+....+.++.++
T Consensus 216 ~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I--~lIGATTENPSFqln~aLlSRC~Vf 276 (554)
T KOG2028|consen 216 EKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDI--TLIGATTENPSFQLNAALLSRCRVF 276 (554)
T ss_pred HHhhhcceeEEEeHHhhhhhhhhhhcccceeccCce--EEEecccCCCccchhHHHHhcccee
Confidence 12234467999999999999999999999999986 34434443 4444333333333333
No 211
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.53 E-value=0.00017 Score=81.96 Aligned_cols=123 Identities=14% Similarity=0.176 Sum_probs=90.1
Q ss_pred hccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcC-CCCceEEecCccccCCCC-----Cch
Q 003070 483 QENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFG-STDLLFHIDMRKRNDGVS-----SHS 556 (850)
Q Consensus 483 ~~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfg-s~~~~i~idms~~~~~~~-----~~~ 556 (850)
...++|.+......-+.|.. -...+-..|+.|+||+||+.+|+.|...-=. ....||+|+|..|.+.+- ||.
T Consensus 77 ~~~LIG~~~~~~~~~eqik~--~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~ 154 (403)
T COG1221 77 LDDLIGESPSLQELREQIKA--YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHE 154 (403)
T ss_pred hhhhhccCHHHHHHHHHHHh--hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccc
Confidence 34567887777777666665 2333567899999999999999999933222 266899999998854321 111
Q ss_pred -hhHHHHhhhCCCE-------EEeeccccccCHHHHHHHHhhhccCccC----------ceEEEEecCC
Q 003070 557 -EMLMGTLKNYEKL-------VVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTKGD 607 (850)
Q Consensus 557 -~~l~e~vr~~P~s-------VvlldeiekA~~~v~~~l~q~~d~G~l~----------n~Iii~Tsn~ 607 (850)
|.+|++-..+|-- .+|||||-..-+..|..|++.||+|.++ |.-+|..+|.
T Consensus 155 kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~ 223 (403)
T COG1221 155 KGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTE 223 (403)
T ss_pred cceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeecccc
Confidence 2455554444433 7999999999999999999999999974 7778887773
No 212
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.53 E-value=0.00012 Score=85.80 Aligned_cols=116 Identities=14% Similarity=0.082 Sum_probs=77.3
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc-c--------c----C-
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK-R--------N----D- 550 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~-~--------~----~- 550 (850)
.+.||..++..+.-++. +.--++|.||+|+|||.+++.|+.++-..... +.++.+. | . .
T Consensus 192 ~v~Gq~~~~~al~laa~------~G~~llliG~~GsGKTtLak~L~gllpp~~g~-e~le~~~i~s~~g~~~~~~~~~~r 264 (506)
T PRK09862 192 DVIGQEQGKRGLEITAA------GGHNLLLIGPPGTGKTMLASRINGLLPDLSNE-EALESAAILSLVNAESVQKQWRQR 264 (506)
T ss_pred EEECcHHHHhhhheecc------CCcEEEEECCCCCcHHHHHHHHhccCCCCCCc-EEEecchhhhhhccccccCCcCCC
Confidence 46789888776543332 23466799999999999999999888643222 1222221 0 0 0
Q ss_pred ---CCC-C-----chh----hHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccC------------ceEEEEec
Q 003070 551 ---GVS-S-----HSE----MLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG------------KVIFVLTK 605 (850)
Q Consensus 551 ---~~~-~-----~~~----~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~------------n~Iii~Ts 605 (850)
+|+ + .+| .--+.+..--.-|+|||||+..++.++..|+|.||+|.+. +..+|.|+
T Consensus 265 Pfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~ 344 (506)
T PRK09862 265 PFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAM 344 (506)
T ss_pred CccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEee
Confidence 010 0 011 1112344444569999999999999999999999999972 78889999
Q ss_pred CC
Q 003070 606 GD 607 (850)
Q Consensus 606 n~ 607 (850)
|.
T Consensus 345 NP 346 (506)
T PRK09862 345 NP 346 (506)
T ss_pred cC
Confidence 83
No 213
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.52 E-value=0.00038 Score=79.95 Aligned_cols=131 Identities=9% Similarity=0.090 Sum_probs=78.4
Q ss_pred CcHHHHHH---HHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHH
Q 003070 70 VSKEDIKL---VFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMN 146 (850)
Q Consensus 70 gRdeeirr---VieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~R 146 (850)
|+++-+.. +...+..++..+.+|.|+||+|||.+++.+++.. +..++.+.-. ...-.++...
T Consensus 16 Gq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~----------~~~~~~l~a~-----~~~~~~ir~i 80 (413)
T PRK13342 16 GQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT----------DAPFEALSAV-----TSGVKDLREV 80 (413)
T ss_pred CcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecc-----cccHHHHHHH
Confidence 55555433 5555666667789999999999999999998864 2345555422 1112233332
Q ss_pred HHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEeccc
Q 003070 147 LTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATAS 226 (850)
Q Consensus 147 lkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT 226 (850)
++....... .+.+.||||||+|.+-... . -.||+ .+ ..|.+-+||+||
T Consensus 81 i~~~~~~~~----~g~~~vL~IDEi~~l~~~~------------------q-------~~LL~-~l--e~~~iilI~att 128 (413)
T PRK13342 81 IEEARQRRS----AGRRTILFIDEIHRFNKAQ------------------Q-------DALLP-HV--EDGTITLIGATT 128 (413)
T ss_pred HHHHHHhhh----cCCceEEEEechhhhCHHH------------------H-------HHHHH-Hh--hcCcEEEEEeCC
Confidence 322222111 2568999999999874311 1 12443 33 357899999988
Q ss_pred HHHHHhhhhcCCcccccccceeeecC
Q 003070 227 YQTYMKCQMRQPPLEIQWALQAVSIP 252 (850)
Q Consensus 227 ~eeY~K~iekdPaLEr~W~LQ~V~Vp 252 (850)
...+.+ -.|+|-+|. +.+.++
T Consensus 129 ~n~~~~---l~~aL~SR~--~~~~~~ 149 (413)
T PRK13342 129 ENPSFE---VNPALLSRA--QVFELK 149 (413)
T ss_pred CChhhh---ccHHHhccc--eeeEeC
Confidence 655433 356777653 444444
No 214
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.50 E-value=0.00074 Score=81.92 Aligned_cols=136 Identities=10% Similarity=0.127 Sum_probs=82.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeEE
Q 003070 87 RRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAII 166 (850)
Q Consensus 87 K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvIL 166 (850)
+++.+|+|+||+|||.+++.++... +..++.++.+.+ ..+..++-+.++.++...++. ..+.||
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~----------~~~f~~is~~~~--~~~~~g~~~~~~~~~f~~a~~----~~P~Ii 248 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFTISGSDF--VEMFVGVGASRVRDMFEQAKK----AAPCII 248 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEehHHh--HHhhhcccHHHHHHHHHHHHh----cCCcEE
Confidence 5679999999999999999997754 344666654422 223345556677777777765 467999
Q ss_pred EecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccC-CCCCeEEEEecccHHHHHhhhhcCCcccc--c
Q 003070 167 YTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNS-ASSTRVWLMATASYQTYMKCQMRQPPLEI--Q 243 (850)
Q Consensus 167 fIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~-~arG~lwlIGatT~eeY~K~iekdPaLEr--~ 243 (850)
||||++.+........ ++ ..+..+.+ +..||..... ..+..+-+||||..-+ .-||+|-| |
T Consensus 249 fIDEiD~l~~~r~~~~-----~g---~~~~~~~~---ln~lL~~mdg~~~~~~vivIaaTN~p~-----~lD~Al~RpgR 312 (644)
T PRK10733 249 FIDEIDAVGRQRGAGL-----GG---GHDEREQT---LNQMLVEMDGFEGNEGIIVIAATNRPD-----VLDPALLRPGR 312 (644)
T ss_pred EehhHhhhhhccCCCC-----CC---CchHHHHH---HHHHHHhhhcccCCCCeeEEEecCChh-----hcCHHHhCCcc
Confidence 9999999865432210 01 01122222 2334332110 0233588999887544 34678876 6
Q ss_pred ccceeeecCCCC
Q 003070 244 WALQAVSIPSGG 255 (850)
Q Consensus 244 W~LQ~V~Vps~~ 255 (850)
|+ ..+.||-|.
T Consensus 313 fd-r~i~v~~Pd 323 (644)
T PRK10733 313 FD-RQVVVGLPD 323 (644)
T ss_pred cc-eEEEcCCCC
Confidence 64 345565555
No 215
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.48 E-value=0.00049 Score=77.39 Aligned_cols=135 Identities=13% Similarity=0.074 Sum_probs=90.4
Q ss_pred EEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccc-cCCCCeEEEec
Q 003070 91 VIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLT-SVGGGAIIYTG 169 (850)
Q Consensus 91 VLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~-~~~~gvILfId 169 (850)
.|-|.||.|||-+++.+|... |+.+|.++.+.| -+..=||=|.+|.++.++..+.+ ..+.+.|||||
T Consensus 152 lL~GPPGcGKTllAraiA~el----------g~~~i~vsa~eL--~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFID 219 (413)
T PLN00020 152 GIWGGKGQGKSFQCELVFKKM----------GIEPIVMSAGEL--ESENAGEPGKLIRQRYREAADIIKKKGKMSCLFIN 219 (413)
T ss_pred EeeCCCCCCHHHHHHHHHHHc----------CCCeEEEEHHHh--hcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEe
Confidence 456899999999999998874 466888887744 45568999999999998887532 12568999999
Q ss_pred chhhhhcCCccCCCCCCCCCccccCCchhhhh-HHhhhhccc-------c---cCCCCCeEEEEecccHHHHHhhhhcCC
Q 003070 170 DLKWTVDQQESNNNNNFNGEIASCYNPINHLV-SEVGKLVSD-------C---NSASSTRVWLMATASYQTYMKCQMRQP 238 (850)
Q Consensus 170 ELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V-~El~nLLkp-------~---l~~arG~lwlIGatT~eeY~K~iekdP 238 (850)
||..+++.-.. . .+...+.+| +.+-+++-. . .....+++-+|+||. +.-.-||
T Consensus 220 EIDA~~g~r~~-~----------~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTN-----rpd~LDp 283 (413)
T PLN00020 220 DLDAGAGRFGT-T----------QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGN-----DFSTLYA 283 (413)
T ss_pred hhhhcCCCCCC-C----------CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCC-----CcccCCH
Confidence 99998875421 0 022333444 566666531 0 001245688899883 3445688
Q ss_pred cccc--cccceeeecCCC
Q 003070 239 PLEI--QWALQAVSIPSG 254 (850)
Q Consensus 239 aLEr--~W~LQ~V~Vps~ 254 (850)
+|-| |+|- .+.+|+.
T Consensus 284 ALlRpGRfDk-~i~lPd~ 300 (413)
T PLN00020 284 PLIRDGRMEK-FYWAPTR 300 (413)
T ss_pred hHcCCCCCCc-eeCCCCH
Confidence 8888 6664 3455543
No 216
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.46 E-value=0.00033 Score=86.02 Aligned_cols=115 Identities=11% Similarity=0.184 Sum_probs=80.4
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCC-------CCceEEecCccccCCCCCch
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGS-------TDLLFHIDMRKRNDGVSSHS 556 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs-------~~~~i~idms~~~~~~~~~~ 556 (850)
..++|-++-|..+.+.+.+.+ ....||.||+|||||.+|+.||..+... ...++.+|++... .+..|.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~----~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~ll-aG~~~~ 260 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR----KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL-AGTKYR 260 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC----CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHh-cccchh
Confidence 368999999999998776632 2345789999999999999999765332 2344555554321 122344
Q ss_pred h-------hHHHHhhhCCCEEEeeccccc---------cCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 557 E-------MLMGTLKNYEKLVVLVEDIDL---------ADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 557 ~-------~l~e~vr~~P~sVvlldeiek---------A~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
| .+.+.+++....|++||||+. ...++.+.|+..+..|++ .+|.++|
T Consensus 261 Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i---~vIgATt 323 (758)
T PRK11034 261 GDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKI---RVIGSTT 323 (758)
T ss_pred hhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCe---EEEecCC
Confidence 3 244445667778999999984 246788999999999875 4677776
No 217
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.45 E-value=0.00023 Score=76.71 Aligned_cols=96 Identities=16% Similarity=0.210 Sum_probs=65.8
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC----C-CCC-chhhHHHHhhhCCCEEEeeccccc--cC
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND----G-VSS-HSEMLMGTLKNYEKLVVLVEDIDL--AD 580 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~----~-~~~-~~~~l~e~vr~~P~sVvlldeiek--A~ 580 (850)
...++|.||.|||||.||-|||.-+....-+++-+...+... + ..+ .-..|...+ ..+.|++||||=. .+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~~~~ 182 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYEPFS 182 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCccCC
Confidence 357889999999999999999988874455666665554311 0 001 112333333 4467999999965 77
Q ss_pred HHHHHHHHhhhccCccCceEEEEecCC
Q 003070 581 PQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 581 ~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
+...+.|.|+|..=.-+..+ |+|||-
T Consensus 183 ~~~~~~~~q~I~~r~~~~~~-~~tsN~ 208 (254)
T COG1484 183 QEEADLLFQLISRRYESRSL-IITSNL 208 (254)
T ss_pred HHHHHHHHHHHHHHHhhccc-eeecCC
Confidence 77788888877776655555 999993
No 218
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.42 E-value=0.00077 Score=63.15 Aligned_cols=93 Identities=10% Similarity=0.041 Sum_probs=62.0
Q ss_pred CcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHH--H
Q 003070 70 VSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMN--L 147 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~R--l 147 (850)
++++.+..+...+.+...++.+|+|++|+|||.+++.+++.+.. ++.+++.++..... .......... .
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~-------~~~~v~~~~~~~~~--~~~~~~~~~~~~~ 72 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR-------PGAPFLYLNASDLL--EGLVVAELFGHFL 72 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc-------CCCCeEEEehhhhh--hhhHHHHHhhhhh
Confidence 58889999999998877889999999999999999999988762 24567777654321 1111111111 0
Q ss_pred HHHHHHHhccccCCCCeEEEecchhhh
Q 003070 148 TELKRKVDSLTSVGGGAIIYTGDLKWT 174 (850)
Q Consensus 148 keL~~~V~~~~~~~~gvILfIdELh~l 174 (850)
......... ...+.+|+|||++.+
T Consensus 73 ~~~~~~~~~---~~~~~~lilDe~~~~ 96 (151)
T cd00009 73 VRLLFELAE---KAKPGVLFIDEIDSL 96 (151)
T ss_pred HhHHHHhhc---cCCCeEEEEeChhhh
Confidence 111111111 245789999999987
No 219
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00028 Score=81.04 Aligned_cols=106 Identities=13% Similarity=0.105 Sum_probs=66.0
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcC-CCC------ceEEecCccccC------C
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFG-STD------LLFHIDMRKRND------G 551 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfg-s~~------~~i~idms~~~~------~ 551 (850)
-|+||.+|-+++--| -+|- --+||.||+|+|||.||+.|..+|=- +.. .+-.++-...+. +
T Consensus 180 DV~GQ~~AKrAleiA----AAGg--HnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~r 253 (490)
T COG0606 180 DVKGQEQAKRALEIA----AAGG--HNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHR 253 (490)
T ss_pred hhcCcHHHHHHHHHH----HhcC--CcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeC
Confidence 379999987655433 3342 35899999999999999998766511 000 011111110000 0
Q ss_pred ----C----------CCchhhHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCcc
Q 003070 552 ----V----------SSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 552 ----~----------~~~~~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l 596 (850)
| .||.-.....|..--.-|+||||+=.=...+.+.|.|=||+|++
T Consensus 254 PFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i 312 (490)
T COG0606 254 PFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKI 312 (490)
T ss_pred CccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcE
Confidence 0 01111233334444455999999988888999999999999996
No 220
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.40 E-value=0.0003 Score=84.72 Aligned_cols=54 Identities=20% Similarity=0.209 Sum_probs=45.8
Q ss_pred HHHHHHhccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCC
Q 003070 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGS 536 (850)
Q Consensus 477 ~L~~~L~~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs 536 (850)
.+...|-+.|+||++|+..+..++...+ -++|.||+|+|||.+|++||+.++..
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~~~------~~l~~G~~G~GKttla~~l~~~l~~~ 77 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQRR------HVMMIGSPGTGKSMLAKAMAELLPKE 77 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHhCC------eEEEECCCCCcHHHHHHHHHHHcChH
Confidence 3445677889999999999988887542 58999999999999999999999866
No 221
>PRK09183 transposase/IS protein; Provisional
Probab=97.38 E-value=0.00038 Score=75.19 Aligned_cols=94 Identities=11% Similarity=0.098 Sum_probs=58.3
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcccc----C--CCCCchhhHHHHhhhCCCEEEeeccccc--cCH
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRN----D--GVSSHSEMLMGTLKNYEKLVVLVEDIDL--ADP 581 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~----~--~~~~~~~~l~e~vr~~P~sVvlldeiek--A~~ 581 (850)
-.++|.||+|+|||.||.+|+............+++.+.- . ...++...+... . ....|++|||+.. .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~-~~~dlLiiDdlg~~~~~~ 180 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-V-MAPRLLIIDEIGYLPFSQ 180 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-h-cCCCEEEEcccccCCCCh
Confidence 4677999999999999999987755444444455544321 0 011111122222 2 2346999999985 566
Q ss_pred HHHHHHHhhhccCccCceEEEEecC
Q 003070 582 QFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 582 ~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
...+.|+++++.-.=+.+ +|+|||
T Consensus 181 ~~~~~lf~li~~r~~~~s-~iiTsn 204 (259)
T PRK09183 181 EEANLFFQVIAKRYEKGS-MILTSN 204 (259)
T ss_pred HHHHHHHHHHHHHHhcCc-EEEecC
Confidence 777788888865322234 577999
No 222
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.00092 Score=72.13 Aligned_cols=93 Identities=12% Similarity=0.009 Sum_probs=66.9
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc------cc------------CCCCCchh---hHHHHhhh----
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK------RN------------DGVSSHSE---MLMGTLKN---- 565 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~------~~------------~~~~~~~~---~l~e~vr~---- 565 (850)
-+||.||.|+||+.+|.++|..++-....- .+.. .. ...+=.++ .+.+.+..
T Consensus 9 A~Lf~G~~G~G~~~lA~~~A~~llC~~~~~---~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 9 PLLLIERKGSFLKPFLYEYLTSIVCTKANG---FCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred ceeeeCCCCCcHHHHHHHHHHHHcCCCCCC---CCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 356999999999999999999988654320 1111 00 01111233 34444443
Q ss_pred -CCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 566 -YEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 566 -~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
..|.|++++++|+.+....|.||..+|+ =-.|++|||+|+.
T Consensus 86 ~~~~KV~II~~ae~m~~~AaNaLLK~LEE-Pp~~t~fiLit~~ 127 (261)
T PRK05818 86 SNGKKIYIIYGIEKLNKQSANSLLKLIEE-PPKNTYGIFTTRN 127 (261)
T ss_pred cCCCEEEEeccHhhhCHHHHHHHHHhhcC-CCCCeEEEEEECC
Confidence 3589999999999999999999999999 3459999999984
No 223
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.35 E-value=0.00051 Score=77.33 Aligned_cols=108 Identities=12% Similarity=0.140 Sum_probs=70.1
Q ss_pred CcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHH
Q 003070 70 VSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTE 149 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rlke 149 (850)
|.+.=+||+++ -.+=.+-||=|+||+|||.+++-+|+.. +..|+.|. ++. ....| +++
T Consensus 34 g~~~~lrr~v~---~~~l~SmIl~GPPG~GKTTlA~liA~~~----------~~~f~~~s--Av~---~gvkd----lr~ 91 (436)
T COG2256 34 GEGKPLRRAVE---AGHLHSMILWGPPGTGKTTLARLIAGTT----------NAAFEALS--AVT---SGVKD----LRE 91 (436)
T ss_pred CCCchHHHHHh---cCCCceeEEECCCCCCHHHHHHHHHHhh----------CCceEEec--ccc---ccHHH----HHH
Confidence 55667777776 2455688999999999999998887743 23455543 332 22333 233
Q ss_pred HHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccH
Q 003070 150 LKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASY 227 (850)
Q Consensus 150 L~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~ 227 (850)
+.+..++....|...||||||+|-+=-+- .|+ || |+. ..|.|-+|||||-
T Consensus 92 i~e~a~~~~~~gr~tiLflDEIHRfnK~Q---------------QD~----------lL-p~v--E~G~iilIGATTE 141 (436)
T COG2256 92 IIEEARKNRLLGRRTILFLDEIHRFNKAQ---------------QDA----------LL-PHV--ENGTIILIGATTE 141 (436)
T ss_pred HHHHHHHHHhcCCceEEEEehhhhcChhh---------------hhh----------hh-hhh--cCCeEEEEeccCC
Confidence 33333332234678999999999983221 233 45 565 4799999999984
No 224
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.31 E-value=0.0022 Score=78.55 Aligned_cols=150 Identities=12% Similarity=0.070 Sum_probs=83.3
Q ss_pred CCCcHHHHHHHHHHHhcC----CCCCeE-EEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeeccccc--------
Q 003070 68 ASVSKEDIKLVFEVFLRK----KRRNTV-IVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVT-------- 134 (850)
Q Consensus 68 ~~gRdeeirrVieIL~Rr----~K~NPV-LVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~-------- 134 (850)
+.+||+|+++|...|..- .-+|.+ |.|.||.||||+|..+++.+..----..+....++.+.=..+.
T Consensus 757 LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqv 836 (1164)
T PTZ00112 757 LPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQV 836 (1164)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHH
Confidence 469999999999988642 233444 8999999999999999988753100012223445555410000
Q ss_pred ----c-cccC-hh-HHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhh
Q 003070 135 ----L-RFMK-KE-EVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKL 207 (850)
Q Consensus 135 ----~-~~~~-Rg-efE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nL 207 (850)
+ +... +| ...+.|..+...+... .+.-.||+|||||.|+.... +. |-+|
T Consensus 837 I~qqL~g~~P~~GlsS~evLerLF~~L~k~--~r~v~IIILDEID~L~kK~Q---------------DV-------LYnL 892 (1164)
T PTZ00112 837 LYKQLFNKKPPNALNSFKILDRLFNQNKKD--NRNVSILIIDEIDYLITKTQ---------------KV-------LFTL 892 (1164)
T ss_pred HHHHHcCCCCCccccHHHHHHHHHhhhhcc--cccceEEEeehHhhhCccHH---------------HH-------HHHH
Confidence 0 0001 11 1123344454444321 13356999999999986321 12 2233
Q ss_pred cccccCCCCCeEEEEecccHHHHHhhhhcCCcccccc
Q 003070 208 VSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQW 244 (850)
Q Consensus 208 Lkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr~W 244 (850)
+.-.. ...++|-+||+++.-.+.. .-+|.+..++
T Consensus 893 FR~~~-~s~SKLiLIGISNdlDLpe--rLdPRLRSRL 926 (1164)
T PTZ00112 893 FDWPT-KINSKLVLIAISNTMDLPE--RLIPRCRSRL 926 (1164)
T ss_pred HHHhh-ccCCeEEEEEecCchhcch--hhhhhhhhcc
Confidence 33111 1346899999987444433 1245565544
No 225
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00098 Score=79.79 Aligned_cols=132 Identities=15% Similarity=0.211 Sum_probs=88.1
Q ss_pred HHhcC-CCC-CeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccc
Q 003070 81 VFLRK-KRR-NTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLT 158 (850)
Q Consensus 81 IL~Rr-~K~-NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~ 158 (850)
.+..+ +|| -.+|-|.||.|||=+++.+|.-. ...|+|+.=.. +=+|+=||-|+.+.++-...++
T Consensus 697 LfssglrkRSGILLYGPPGTGKTLlAKAVATEc----------sL~FlSVKGPE--LLNMYVGqSE~NVR~VFerAR~-- 762 (953)
T KOG0736|consen 697 LFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGPE--LLNMYVGQSEENVREVFERARS-- 762 (953)
T ss_pred hhhccccccceeEEECCCCCchHHHHHHHHhhc----------eeeEEeecCHH--HHHHHhcchHHHHHHHHHHhhc--
Confidence 34444 445 57778999999999998887642 12344433111 2368899999999999999987
Q ss_pred cCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCC
Q 003070 159 SVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQP 238 (850)
Q Consensus 159 ~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdP 238 (850)
..+.|+|+|||.-|....+..|+ +| +.||.+|+.+=.=|-.......-.|-+||||.--- --||
T Consensus 763 --A~PCVIFFDELDSlAP~RG~sGD---SG------GVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD-----LLDp 826 (953)
T KOG0736|consen 763 --AAPCVIFFDELDSLAPNRGRSGD---SG------GVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD-----LLDP 826 (953)
T ss_pred --cCCeEEEeccccccCccCCCCCC---cc------ccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc-----ccCh
Confidence 56899999999999987644333 33 37888876543323221111234699999985322 2478
Q ss_pred cccc
Q 003070 239 PLEI 242 (850)
Q Consensus 239 aLEr 242 (850)
||=|
T Consensus 827 ALLR 830 (953)
T KOG0736|consen 827 ALLR 830 (953)
T ss_pred hhcC
Confidence 8877
No 226
>CHL00206 ycf2 Ycf2; Provisional
Probab=97.28 E-value=0.00052 Score=88.96 Aligned_cols=94 Identities=11% Similarity=0.135 Sum_probs=66.0
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC-CCCCc---------------------------------
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND-GVSSH--------------------------------- 555 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~-~~~~~--------------------------------- 555 (850)
-=+|+.||+|+|||.||||||... .-.||++.++++-+ .+.+|
T Consensus 1631 KGILLiGPPGTGKTlLAKALA~es---~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206 1631 RGILVIGSIGTGRSYLVKYLATNS---YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred CceEEECCCCCCHHHHHHHHHHhc---CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcch
Confidence 345689999999999999999865 57899998887421 11110
Q ss_pred -------------hhhHHHHhhhCCCEEEeeccccccCHH-----HHHHHHhhhccCc----cCceEEEEecC
Q 003070 556 -------------SEMLMGTLKNYEKLVVLVEDIDLADPQ-----FIKILADGFETEN----FGKVIFVLTKG 606 (850)
Q Consensus 556 -------------~~~l~e~vr~~P~sVvlldeiekA~~~-----v~~~l~q~~d~G~----l~n~Iii~Tsn 606 (850)
+-.+-+..|+..=+||++||||.-... ..+.|+..|+... -++.|||.+||
T Consensus 1708 ~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATN 1780 (2281)
T CHL00206 1708 LTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTH 1780 (2281)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCC
Confidence 111334456777789999999976532 3577777777432 34889999999
No 227
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00092 Score=74.84 Aligned_cols=118 Identities=18% Similarity=0.244 Sum_probs=80.1
Q ss_pred CCCchHHHHHHHHHHHHhh------hC--CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc----cccCCCC
Q 003070 486 VPWQFDSIHSIVEVLVECK------SA--KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR----KRNDGVS 553 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r------~g--k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms----~~~~~~~ 553 (850)
|.|-.+|..-+-+||..-- .| +|---+|+.||+|+|||-||||+|-.. | --|..+--+ +|-...-
T Consensus 214 Iagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc-~--tTFFNVSsstltSKwRGeSE 290 (491)
T KOG0738|consen 214 IAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC-G--TTFFNVSSSTLTSKWRGESE 290 (491)
T ss_pred hcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh-c--CeEEEechhhhhhhhccchH
Confidence 3455677777777776432 23 566668999999999999999999654 2 334444322 2211111
Q ss_pred CchhhHHHHhhhCCCEEEeeccccc------------cCHHHHHHHHhhhcc--CccCc--eEEEEecC
Q 003070 554 SHSEMLMGTLKNYEKLVVLVEDIDL------------ADPQFIKILADGFET--ENFGK--VIFVLTKG 606 (850)
Q Consensus 554 ~~~~~l~e~vr~~P~sVvlldeiek------------A~~~v~~~l~q~~d~--G~l~n--~Iii~Tsn 606 (850)
-.|-.|-|.-|.+-=|+|||||||- |...|..-||+-||- |.+.| .||||.+.
T Consensus 291 KlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT 359 (491)
T KOG0738|consen 291 KLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT 359 (491)
T ss_pred HHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEecc
Confidence 1455788989999999999999984 778888889888873 34544 56666544
No 228
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0013 Score=72.12 Aligned_cols=109 Identities=15% Similarity=0.237 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhhhC---CCCeE---EEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccc-----------------
Q 003070 492 SIHSIVEVLVECKSA---KKATW---FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR----------------- 548 (850)
Q Consensus 492 ai~~Ia~av~~~r~g---k~~~~---~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~----------------- 548 (850)
...-++.+++.++-+ .-.+| +|+.||+|+|||.|+|+||.-|- ||..-+.|
T Consensus 154 ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLS------IR~~~~y~~~~liEinshsLFSKWF 227 (423)
T KOG0744|consen 154 LLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLS------IRTNDRYYKGQLIEINSHSLFSKWF 227 (423)
T ss_pred HHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhhe------eeecCccccceEEEEehhHHHHHHH
Confidence 345567777777665 22355 89999999999999999998872 44332222
Q ss_pred cCCCCC---chhhHHHHhhh-CCCEEEeecccccc---C------------HHHHHHHHhhhccCcc-CceEEEEecC
Q 003070 549 NDGVSS---HSEMLMGTLKN-YEKLVVLVEDIDLA---D------------PQFIKILADGFETENF-GKVIFVLTKG 606 (850)
Q Consensus 549 ~~~~~~---~~~~l~e~vr~-~P~sVvlldeiekA---~------------~~v~~~l~q~~d~G~l-~n~Iii~Tsn 606 (850)
.|++.- ..+.+.|.+.. +-.-.||+||||-- . -.|.|.|+--||.=+- .|.+|..|||
T Consensus 228 sESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSN 305 (423)
T KOG0744|consen 228 SESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSN 305 (423)
T ss_pred hhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccc
Confidence 122211 12345555544 33446789999941 1 3577888888886443 4999999999
No 229
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.24 E-value=0.0011 Score=70.08 Aligned_cols=80 Identities=13% Similarity=0.163 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHHhcC---CC---CCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHH
Q 003070 71 SKEDIKLVFEVFLRK---KR---RNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVE 144 (850)
Q Consensus 71 RdeeirrVieIL~Rr---~K---~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE 144 (850)
..+++..-+.++.+- ++ .+.+|-|+||+|||.++.=+|+... ..+..+.=..+ .+.+|
T Consensus 28 GQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~----------~~~~~~sg~~i----~k~~d-- 91 (233)
T PF05496_consen 28 GQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG----------VNFKITSGPAI----EKAGD-- 91 (233)
T ss_dssp S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT------------EEEEECCC------SCHH--
T ss_pred CcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC----------CCeEeccchhh----hhHHH--
Confidence 456666666666431 22 2579999999999999977776543 23333211111 11233
Q ss_pred HHHHHHHHHHhccccCCCCeEEEecchhhh
Q 003070 145 MNLTELKRKVDSLTSVGGGAIIYTGDLKWT 174 (850)
Q Consensus 145 ~RlkeL~~~V~~~~~~~~gvILfIdELh~l 174 (850)
|...+.+. +.+-||||||||-+
T Consensus 92 -----l~~il~~l---~~~~ILFIDEIHRl 113 (233)
T PF05496_consen 92 -----LAAILTNL---KEGDILFIDEIHRL 113 (233)
T ss_dssp -----HHHHHHT-----TT-EEEECTCCC-
T ss_pred -----HHHHHHhc---CCCcEEEEechhhc
Confidence 33334432 45789999999987
No 230
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.0014 Score=72.04 Aligned_cols=114 Identities=17% Similarity=0.223 Sum_probs=76.9
Q ss_pred CchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCc----------eEEecCccccC----CCC
Q 003070 488 WQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDL----------LFHIDMRKRND----GVS 553 (850)
Q Consensus 488 gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~----------~i~idms~~~~----~~~ 553 (850)
.|+.++..+..++... |---.+||.|| +||+.+|+.+|+.++-.... --+++...+-+ .|.
T Consensus 6 ~q~~~~~~L~~~~~~~---rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~ 80 (290)
T PRK07276 6 KQPKVFQRFQTILEQD---RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQ 80 (290)
T ss_pred HHHHHHHHHHHHHHcC---CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCC
Confidence 5778888888877654 33345668997 68999999999998864321 01111111100 111
Q ss_pred C---chhh---HHHHhhhC----CCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 554 S---HSEM---LMGTLKNY----EKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 554 ~---~~~~---l~e~vr~~----P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
| -+++ |.+.+... +|.|+++|++|+-+....|.||..+|+=- .|++|||+|+.
T Consensus 81 ~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp-~~t~~iL~t~~ 143 (290)
T PRK07276 81 GQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQ-SEIYIFLLTND 143 (290)
T ss_pred CCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCC-CCeEEEEEECC
Confidence 1 1343 44444444 46899999999999999999999999943 48999998874
No 231
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00037 Score=79.39 Aligned_cols=95 Identities=21% Similarity=0.276 Sum_probs=61.8
Q ss_pred hhCCCC-eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHH-hhhCCCEEEeeccccccC-
Q 003070 504 KSAKKA-TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGT-LKNYEKLVVLVEDIDLAD- 580 (850)
Q Consensus 504 r~gk~~-~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~-vr~~P~sVvlldeiekA~- 580 (850)
|.||+- --+||-||+|+||+.|..|||.+| .-.+.-+++++-... .+ |-.- +...+.||||+||||-|=
T Consensus 229 rvGkawKRGYLLYGPPGTGKSS~IaAmAn~L---~ydIydLeLt~v~~n----~d-Lr~LL~~t~~kSIivIEDIDcs~~ 300 (457)
T KOG0743|consen 229 RVGKAWKRGYLLYGPPGTGKSSFIAAMANYL---NYDIYDLELTEVKLD----SD-LRHLLLATPNKSILLIEDIDCSFD 300 (457)
T ss_pred hcCcchhccceeeCCCCCCHHHHHHHHHhhc---CCceEEeeeccccCc----HH-HHHHHHhCCCCcEEEEeecccccc
Confidence 346542 236789999999999999999998 445555666543110 12 2222 345778999999999771
Q ss_pred -----------------HHHHHHHHhhhccCccCce----EEEEecCC
Q 003070 581 -----------------PQFIKILADGFETENFGKV----IFVLTKGD 607 (850)
Q Consensus 581 -----------------~~v~~~l~q~~d~G~l~n~----Iii~Tsn~ 607 (850)
..-+-.||..+| |--+.| |||||+|.
T Consensus 301 l~~~~~~~~~~~~~~~~~VTlSGLLNfiD-GlwSscg~ERIivFTTNh 347 (457)
T KOG0743|consen 301 LRERRKKKKENFEGDLSRVTLSGLLNFLD-GLWSSCGDERIIVFTTNH 347 (457)
T ss_pred cccccccccccccCCcceeehHHhhhhhc-cccccCCCceEEEEecCC
Confidence 122344666553 444444 99999994
No 232
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.22 E-value=0.0011 Score=74.85 Aligned_cols=86 Identities=14% Similarity=0.141 Sum_probs=65.1
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhc---CCCCceEEe-cCcccc--------------CC---CCCchhhHHHHhhhC
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVF---GSTDLLFHI-DMRKRN--------------DG---VSSHSEMLMGTLKNY 566 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lf---gs~~~~i~i-dms~~~--------------~~---~~~~~~~l~e~vr~~ 566 (850)
+.+-++++||||+|||++.++|++.+- +....++.+ |.-||. +- ..+|...|..++|++
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~ 212 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRK 212 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccC
Confidence 468999999999999999999999883 333344443 233321 00 124566788899999
Q ss_pred CCEEEeeccccccCHHHHHHHHhhhccCcc
Q 003070 567 EKLVVLVEDIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 567 P~sVvlldeiekA~~~v~~~l~q~~d~G~l 596 (850)
|+ ++++.||. |.+.....+++..+|++
T Consensus 213 Pd-~i~vGEiR--d~et~~~al~aa~tGh~ 239 (358)
T TIGR02524 213 PH-AILVGEAR--DAETISAALEAALTGHP 239 (358)
T ss_pred CC-EEeeeeeC--CHHHHHHHHHHHHcCCc
Confidence 99 89999876 78888899999999987
No 233
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0009 Score=78.38 Aligned_cols=114 Identities=18% Similarity=0.256 Sum_probs=73.4
Q ss_pred CCCchHHHHHHHHHHHHhhh-------C-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchh
Q 003070 486 VPWQFDSIHSIVEVLVECKS-------A-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSE 557 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~-------g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~ 557 (850)
+.|-+..+..+++.|...+. | +|--=+||+||+|+|||.||.|+|..+ .-.|+.|.--+-- .||.|
T Consensus 192 iGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vPf~~isApeiv---SGvSG 265 (802)
T KOG0733|consen 192 IGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVPFLSISAPEIV---SGVSG 265 (802)
T ss_pred ccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---CCceEeecchhhh---cccCc
Confidence 34555555555555555443 4 555567899999999999999999887 5677877644421 13332
Q ss_pred --------hHHHHhhhCCCEEEeeccccccCH-----------HHHHHHHhhhccCccC-----ceEEEEecC
Q 003070 558 --------MLMGTLKNYEKLVVLVEDIDLADP-----------QFIKILADGFETENFG-----KVIFVLTKG 606 (850)
Q Consensus 558 --------~l~e~vr~~P~sVvlldeiekA~~-----------~v~~~l~q~~d~G~l~-----n~Iii~Tsn 606 (850)
.+-+| +.+--+||||||||---| .+..-|+.-||.=.+. .++||-++|
T Consensus 266 ESEkkiRelF~~A-~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATn 337 (802)
T KOG0733|consen 266 ESEKKIRELFDQA-KSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATN 337 (802)
T ss_pred ccHHHHHHHHHHH-hccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCC
Confidence 44455 445456999999996332 2334455556653332 578888888
No 234
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.19 E-value=0.0014 Score=67.75 Aligned_cols=84 Identities=19% Similarity=0.257 Sum_probs=60.7
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCC-CCceEEec-Ccccc-----------C---CCCCchhhHHHHhhhCCCEEEee
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGS-TDLLFHID-MRKRN-----------D---GVSSHSEMLMGTLKNYEKLVVLV 573 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs-~~~~i~id-ms~~~-----------~---~~~~~~~~l~e~vr~~P~sVvll 573 (850)
|.++|.||+|+|||+++.+|+..+-.. ...++.+. --++. + ....|.+.+..++|.+|- +|++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd-~ii~ 80 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPD-VILV 80 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcC-EEEE
Confidence 678999999999999999999887532 23334332 11221 0 122455678889999986 9999
Q ss_pred ccccccCHHHHHHHHhhhccCcc
Q 003070 574 EDIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 574 deiekA~~~v~~~l~q~~d~G~l 596 (850)
||+- +++....++++..+|.+
T Consensus 81 gEir--d~e~~~~~l~~a~~G~~ 101 (198)
T cd01131 81 GEMR--DLETIRLALTAAETGHL 101 (198)
T ss_pred cCCC--CHHHHHHHHHHHHcCCE
Confidence 9995 67778888888888874
No 235
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.18 E-value=0.0063 Score=71.10 Aligned_cols=120 Identities=14% Similarity=0.169 Sum_probs=90.7
Q ss_pred ccCCCchHHHHHHHHHHHHhhh-CCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC-----CCCCch-
Q 003070 484 ENVPWQFDSIHSIVEVLVECKS-AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND-----GVSSHS- 556 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~-gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~-----~~~~~~- 556 (850)
..++|...++..+-+ .++. .+.+...|+.|-+|+||.-+|+++=..==-....||+|+|..--+ .==||.
T Consensus 245 ~~Iig~S~~m~~~~~---~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~ 321 (560)
T COG3829 245 DDIIGESPAMLRVLE---LAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEK 321 (560)
T ss_pred hhhccCCHHHHHHHH---HHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcCC
Confidence 367888766655443 3333 367899999999999999999998776655678999999975311 111343
Q ss_pred hhHHHHhhh-CCCE-------EEeeccccccCHHHHHHHHhhhccCccC----------ceEEEEecC
Q 003070 557 EMLMGTLKN-YEKL-------VVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTKG 606 (850)
Q Consensus 557 ~~l~e~vr~-~P~s-------VvlldeiekA~~~v~~~l~q~~d~G~l~----------n~Iii~Tsn 606 (850)
|-+|+|.+. +|-- =+|||||-.-....|..||++++++.|. |.=||-++|
T Consensus 322 GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN 389 (560)
T COG3829 322 GAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATN 389 (560)
T ss_pred ccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccC
Confidence 478888775 5544 5899999999999999999999999973 666777776
No 236
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.15 E-value=0.0019 Score=70.96 Aligned_cols=137 Identities=12% Similarity=0.190 Sum_probs=86.6
Q ss_pred CCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeeccc--------------ccccccChhHHHHHHHHHHHH
Q 003070 88 RNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAP--------------VTLRFMKKEEVEMNLTELKRK 153 (850)
Q Consensus 88 ~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~--------------l~~~~~~RgefE~RlkeL~~~ 153 (850)
.|-+|||+++.|||.|++-+++.=-...-++. ...-|+.+++.+ +.+-...+....++-..+...
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~-~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~l 140 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDA-ERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRL 140 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCC-ccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHH
Confidence 69999999999999999999875433322221 224577777531 111111233333333333445
Q ss_pred HhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhh
Q 003070 154 VDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKC 233 (850)
Q Consensus 154 V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~ 233 (850)
++.+ +-=+|.|||+|.+.-... ..- -+.-|+||--+ ..-++-+||+.|-+.|. .
T Consensus 141 lr~~----~vrmLIIDE~H~lLaGs~---------------~~q----r~~Ln~LK~L~--NeL~ipiV~vGt~~A~~-a 194 (302)
T PF05621_consen 141 LRRL----GVRMLIIDEFHNLLAGSY---------------RKQ----REFLNALKFLG--NELQIPIVGVGTREAYR-A 194 (302)
T ss_pred HHHc----CCcEEEeechHHHhcccH---------------HHH----HHHHHHHHHHh--hccCCCeEEeccHHHHH-H
Confidence 5542 345788999999764221 111 23457787332 45678999999999999 5
Q ss_pred hhcCCcccccccceeeecCC
Q 003070 234 QMRQPPLEIQWALQAVSIPS 253 (850)
Q Consensus 234 iekdPaLEr~W~LQ~V~Vps 253 (850)
+..||-|++|| +++.+|.
T Consensus 195 l~~D~QLa~RF--~~~~Lp~ 212 (302)
T PF05621_consen 195 LRTDPQLASRF--EPFELPR 212 (302)
T ss_pred hccCHHHHhcc--CCccCCC
Confidence 78999999975 6776663
No 237
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.15 E-value=0.00097 Score=74.84 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=57.6
Q ss_pred cCCCchHHHHHHHHHHHHhhhCC-CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHh
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAK-KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTL 563 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk-~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~v 563 (850)
-++||.+|=++..=.+..-+.|| ..--+||.||+|+|||.||.++|+.| |..-.|+.+.-||--...-.=.+.|++++
T Consensus 25 GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL-G~~~PF~~isgSEiyS~e~kKTE~L~qa~ 103 (398)
T PF06068_consen 25 GLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL-GEDVPFVSISGSEIYSSEVKKTEALTQAF 103 (398)
T ss_dssp TEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC-TTTS-EEEEEGGGG-BTTC-HHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh-CCCCCeeEcccceeeecccCchHHHHHHH
Confidence 45899888877777777777876 45678899999999999999999998 78889999999983111111135677777
Q ss_pred hhC
Q 003070 564 KNY 566 (850)
Q Consensus 564 r~~ 566 (850)
|+-
T Consensus 104 Rra 106 (398)
T PF06068_consen 104 RRA 106 (398)
T ss_dssp HCS
T ss_pred HHh
Confidence 653
No 238
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.13 E-value=0.0011 Score=73.60 Aligned_cols=81 Identities=20% Similarity=0.184 Sum_probs=59.8
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCC-CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHH
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAK-KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGT 562 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk-~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~ 562 (850)
.-++||.+|=++-.=.+...++|| ..--+||.||+|+|||.||.++|+.| |..-.|+.+.-||.-...-.-.+.|++|
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF~~isgsEiYS~E~kKTE~L~qa 117 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL-GEDVPFVAISGSEIYSLEVKKTEALTQA 117 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh-CCCCCceeeccceeeeecccHHHHHHHH
Confidence 346999988777666666677774 34567899999999999999999999 8888999999888311111113567777
Q ss_pred hhh
Q 003070 563 LKN 565 (850)
Q Consensus 563 vr~ 565 (850)
+|+
T Consensus 118 ~Rr 120 (450)
T COG1224 118 LRR 120 (450)
T ss_pred HHH
Confidence 665
No 239
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.10 E-value=0.0019 Score=69.46 Aligned_cols=112 Identities=16% Similarity=0.201 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHH--hcCCCCceEEecCccccC--------------C--
Q 003070 490 FDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAES--VFGSTDLLFHIDMRKRND--------------G-- 551 (850)
Q Consensus 490 ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~--lfgs~~~~i~idms~~~~--------------~-- 551 (850)
+.-+.+|.+.+...+ .+...+.+.|+.|+|||.||+++++. +-+..+..+-++.+.... .
T Consensus 2 e~~~~~l~~~L~~~~--~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNS--NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp HHHHHHHHHHHHTTT--TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred HHHHHHHHHHhhCCC--CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccc
Confidence 445677777777644 56789999999999999999999977 544455566666664211 1
Q ss_pred ---CCC----chhhHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 552 ---VSS----HSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 552 ---~~~----~~~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.+. ..+.|.+.++++ ..+|+||||+... .+..|...+-.+.. ++-||+||..
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~-~~LlVlDdv~~~~--~~~~l~~~~~~~~~-~~kilvTTR~ 138 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDK-RCLLVLDDVWDEE--DLEELREPLPSFSS-GSKILVTTRD 138 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCT-SEEEEEEEE-SHH--HH-------HCHHS-S-EEEEEESC
T ss_pred ccccccccccccccchhhhccc-cceeeeeeecccc--cccccccccccccc-cccccccccc
Confidence 011 124688888888 5599999998766 44444554444333 5666777763
No 240
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.10 E-value=0.0023 Score=69.43 Aligned_cols=86 Identities=14% Similarity=0.122 Sum_probs=66.0
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEe-cCccccC-----------CCCCchhhHHHHhhhCCCEEEeecc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHI-DMRKRND-----------GVSSHSEMLMGTLKNYEKLVVLVED 575 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~i-dms~~~~-----------~~~~~~~~l~e~vr~~P~sVvllde 575 (850)
+.+.++|.||||+|||++.++|...+......++.| |-.|+.- ..-+|.+.+..++|.+|- +|++.|
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD-~i~vgE 157 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPD-IIMVGE 157 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCC-EEEecc
Confidence 457899999999999999999988886545567777 3334311 123466789999999997 999999
Q ss_pred ccccCHHHHHHHHhhhccCcc
Q 003070 576 IDLADPQFIKILADGFETENF 596 (850)
Q Consensus 576 iekA~~~v~~~l~q~~d~G~l 596 (850)
|-- ++....++++..+|++
T Consensus 158 iR~--~e~a~~~~~aa~tGh~ 176 (264)
T cd01129 158 IRD--AETAEIAVQAALTGHL 176 (264)
T ss_pred CCC--HHHHHHHHHHHHcCCc
Confidence 974 4566778899999986
No 241
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0035 Score=72.59 Aligned_cols=149 Identities=11% Similarity=0.175 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhcC---------CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhH
Q 003070 72 KEDIKLVFEVFLRK---------KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEE 142 (850)
Q Consensus 72 deeirrVieIL~Rr---------~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~Rge 142 (850)
..|+..|+|-|.-. --+-.+|||+||.|||-+++.+|. ...||- +.-. + -.|.-|.=|.
T Consensus 313 K~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAG---EA~VPF-------F~~s-G-SEFdEm~VGv 380 (752)
T KOG0734|consen 313 KQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAG---EAGVPF-------FYAS-G-SEFDEMFVGV 380 (752)
T ss_pred HHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhc---ccCCCe-------Eecc-c-cchhhhhhcc
Confidence 36888899988533 236789999999999988766542 123552 1110 0 0112222233
Q ss_pred HHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccC-CCCCeEEE
Q 003070 143 VEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNS-ASSTRVWL 221 (850)
Q Consensus 143 fE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~-~arG~lwl 221 (850)
-..|+.+|.+..+. ..+.|+|||||..+=+-... .+ +-|+=.-+-.||-.+-. .-..-|-+
T Consensus 381 GArRVRdLF~aAk~----~APcIIFIDEiDavG~kR~~-------------~~-~~y~kqTlNQLLvEmDGF~qNeGiIv 442 (752)
T KOG0734|consen 381 GARRVRDLFAAAKA----RAPCIIFIDEIDAVGGKRNP-------------SD-QHYAKQTLNQLLVEMDGFKQNEGIIV 442 (752)
T ss_pred cHHHHHHHHHHHHh----cCCeEEEEechhhhcccCCc-------------cH-HHHHHHHHHHHHHHhcCcCcCCceEE
Confidence 34688888888886 56899999999876332211 11 12444445566654320 01123999
Q ss_pred EecccHHHHHhhhhcCCcccc--cccceeeecCCCCc
Q 003070 222 MATASYQTYMKCQMRQPPLEI--QWALQAVSIPSGGL 256 (850)
Q Consensus 222 IGatT~eeY~K~iekdPaLEr--~W~LQ~V~Vps~~~ 256 (850)
||||.+-+-+ ||||-| |||- -|.||.|..
T Consensus 443 igATNfpe~L-----D~AL~RPGRFD~-~v~Vp~PDv 473 (752)
T KOG0734|consen 443 IGATNFPEAL-----DKALTRPGRFDR-HVTVPLPDV 473 (752)
T ss_pred EeccCChhhh-----hHHhcCCCccce-eEecCCCCc
Confidence 9999876644 678877 5553 477887773
No 242
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.05 E-value=0.011 Score=69.92 Aligned_cols=95 Identities=18% Similarity=0.238 Sum_probs=54.4
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCce-EEecCcc-------ccC---CCCCch---hhHHHH-hhh---------
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLL-FHIDMRK-------RND---GVSSHS---EMLMGT-LKN--------- 565 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~-i~idms~-------~~~---~~~~~~---~~l~e~-vr~--------- 565 (850)
.-||+.||.|+|||++++.||+.+=-.-..- -.++..+ |.. ....|. +.+.+- ++.
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~ 125 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMS 125 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 4788999999999999999998862110000 0011100 100 000011 111111 111
Q ss_pred -----CCCEEEeecccccc----CHHHHHHHHhhhccCccCceEEEEe
Q 003070 566 -----YEKLVVLVEDIDLA----DPQFIKILADGFETENFGKVIFVLT 604 (850)
Q Consensus 566 -----~P~sVvlldeiekA----~~~v~~~l~q~~d~G~l~n~Iii~T 604 (850)
....|||+||+=-. ...++..|.+.+..++..=.|||+|
T Consensus 126 g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~~~~PlV~iiS 173 (519)
T PF03215_consen 126 GSNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLRSSRCLPLVFIIS 173 (519)
T ss_pred CCCcCCCceEEEeeccccccchhHHHHHHHHHHHHHcCCCCCEEEEEe
Confidence 23469999998642 2578888888888887545777776
No 243
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.04 E-value=0.002 Score=72.48 Aligned_cols=86 Identities=17% Similarity=0.249 Sum_probs=64.7
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcC-CCCceEEe-cCcccc-----------C---CCCCchhhHHHHhhhCCCEEE
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFG-STDLLFHI-DMRKRN-----------D---GVSSHSEMLMGTLKNYEKLVV 571 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfg-s~~~~i~i-dms~~~-----------~---~~~~~~~~l~e~vr~~P~sVv 571 (850)
+.+.++|.||+|+|||++.++|...+-. ....++.+ |.-|+. + ...+|.+.|..++|.+|- ||
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd-~i 199 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPD-VI 199 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCC-EE
Confidence 4588999999999999999999987642 23445555 333321 0 112456678899999997 99
Q ss_pred eeccccccCHHHHHHHHhhhccCcc
Q 003070 572 LVEDIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 572 lldeiekA~~~v~~~l~q~~d~G~l 596 (850)
++|||- |++.....+++..+|.+
T Consensus 200 ~vgEir--d~~~~~~~l~aa~tGh~ 222 (343)
T TIGR01420 200 LIGEMR--DLETVELALTAAETGHL 222 (343)
T ss_pred EEeCCC--CHHHHHHHHHHHHcCCc
Confidence 999997 88888888999999975
No 244
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.0066 Score=67.12 Aligned_cols=107 Identities=15% Similarity=0.138 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCC----------CceEEecCccccCCCCCchhh---
Q 003070 492 SIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGST----------DLLFHIDMRKRNDGVSSHSEM--- 558 (850)
Q Consensus 492 ai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~----------~~~i~idms~~~~~~~~~~~~--- 558 (850)
++..+-+++. .|+---.+||.|+.|.||+.+|+++|..++... +.++.+|-. +..-.++.
T Consensus 4 ~~~~l~~~i~---~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~----g~~i~vd~Ir~ 76 (299)
T PRK07132 4 WIKFLDNSAT---QNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF----DKDLSKSEFLS 76 (299)
T ss_pred HHHHHHHHHH---hCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC----CCcCCHHHHHH
Confidence 3344444443 345556888999999999999999999995421 134444311 11122444
Q ss_pred HHHHhhh-----CCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 559 LMGTLKN-----YEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 559 l~e~vr~-----~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+.+.+.. .+|.||++|++|+.....+|.|+..||+ --.+|+|||+++
T Consensus 77 l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE-Pp~~t~~il~~~ 128 (299)
T PRK07132 77 AINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEE-PPKDTYFLLTTK 128 (299)
T ss_pred HHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhC-CCCCeEEEEEeC
Confidence 3444432 3678999999999999999999999999 335999999887
No 245
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0016 Score=75.32 Aligned_cols=88 Identities=20% Similarity=0.195 Sum_probs=58.6
Q ss_pred ccCCCchHHHHHHHHHHHHhh-------hC-C-CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCC
Q 003070 484 ENVPWQFDSIHSIVEVLVECK-------SA-K-KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSS 554 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r-------~g-k-~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~ 554 (850)
+-|.|=+||=.++-+.|.--| .| | |-|. |+.||+|+|||-||+|+|-.- .-.|.+.--|||+|-
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGV-LLvGPPGTGKTlLARAvAGEA---~VPFF~~sGSEFdEm--- 376 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGV-LLVGPPGTGKTLLARAVAGEA---GVPFFYASGSEFDEM--- 376 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCce-EEeCCCCCchhHHHHHhhccc---CCCeEeccccchhhh---
Confidence 345566666555555544333 34 3 5554 589999999999999999321 346677777888763
Q ss_pred chh-------hHHHHhhhCCCEEEeeccccc
Q 003070 555 HSE-------MLMGTLKNYEKLVVLVEDIDL 578 (850)
Q Consensus 555 ~~~-------~l~e~vr~~P~sVvlldeiek 578 (850)
||| -|-.+-+.+-=+|||+||||-
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 333 355555777778999999995
No 246
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.93 E-value=0.015 Score=66.56 Aligned_cols=103 Identities=16% Similarity=0.249 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhhhCC------
Q 003070 494 HSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYE------ 567 (850)
Q Consensus 494 ~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~~P------ 567 (850)
.+++.++..+ .|++--++++.||+|.|||.|+.|++....-...+...+.++.- .|...+..++|.+-
T Consensus 99 ~aa~~~va~~-~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se-----~f~~~~v~a~~~~~~~~Fk~ 172 (408)
T COG0593 99 YAAAKAVAEN-PGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE-----DFTNDFVKALRDNEMEKFKE 172 (408)
T ss_pred HHHHHHHHhc-cCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH-----HHHHHHHHHHHhhhHHHHHH
Confidence 3444444432 34567899999999999999999999888877665555544421 13344455555532
Q ss_pred ---CEEEeeccccc--c----CHHHHHHHHhhhccCccCceEEEEecC
Q 003070 568 ---KLVVLVEDIDL--A----DPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 568 ---~sVvlldeiek--A----~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
..++|+|||+. - ...+++.+=.+.+.|+ -|||||.
T Consensus 173 ~y~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~k----qIvltsd 216 (408)
T COG0593 173 KYSLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGK----QIVLTSD 216 (408)
T ss_pred hhccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCC----EEEEEcC
Confidence 66999999986 3 3456666666677776 5677775
No 247
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.93 E-value=0.0022 Score=59.84 Aligned_cols=82 Identities=17% Similarity=0.265 Sum_probs=54.6
Q ss_pred EEecCCchHHHHHHHHHHHHhcCCC-----CceEEecCccccCCCCCchhhHHHHhhhCCCEEEeeccccccCHH----H
Q 003070 513 LLQGNDTIGKRRLALSIAESVFGST-----DLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQ----F 583 (850)
Q Consensus 513 lf~Gp~gvGKt~lA~~LA~~lfgs~-----~~~i~idms~~~~~~~~~~~~l~e~vr~~P~sVvlldeiekA~~~----v 583 (850)
.|.||+|+|||.+|+.||..+.... ..+... .+ ..+.. .--+. ..||++||+-..... .
T Consensus 2 ~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~--------~~-~~~~w-~gY~~--q~vvi~DD~~~~~~~~~~~~ 69 (107)
T PF00910_consen 2 WIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTR--------NP-GDKFW-DGYQG--QPVVIIDDFGQDNDGYNYSD 69 (107)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeC--------CC-ccchh-hccCC--CcEEEEeecCccccccchHH
Confidence 5799999999999999998886322 111110 11 11122 22222 258999999987754 7
Q ss_pred HHHHHhhhccCccC--------------ceEEEEecC
Q 003070 584 IKILADGFETENFG--------------KVIFVLTKG 606 (850)
Q Consensus 584 ~~~l~q~~d~G~l~--------------n~Iii~Tsn 606 (850)
...|++.++.-.+. =-+||+|||
T Consensus 70 ~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN 106 (107)
T PF00910_consen 70 ESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSN 106 (107)
T ss_pred HHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCC
Confidence 88888888888763 258888887
No 248
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.92 E-value=0.004 Score=81.26 Aligned_cols=134 Identities=16% Similarity=0.155 Sum_probs=79.5
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccc-------------c----------------
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTL-------------R---------------- 136 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~-------------~---------------- 136 (850)
--+..+|||+||.|||-+|+.||.- ..|| ++++..+.+.- +
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e---s~VP-------FIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN---SYVP-------FITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh---cCCc-------eEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 3557899999999999999999874 2344 44444332210 0
Q ss_pred ------------ccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHh
Q 003070 137 ------------FMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEV 204 (850)
Q Consensus 137 ------------~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El 204 (850)
.+..++=..|+..+.+.+++ ..+.|+||||||.|-..... .-.+..++.+|
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk----~SPCIIFIDEIDaL~~~ds~-------------~ltL~qLLneL 1761 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKA----MSPCIIWIPNIHDLNVNESN-------------YLSLGLLVNSL 1761 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHH----CCCeEEEEEchhhcCCCccc-------------eehHHHHHHHh
Confidence 01111222357888888886 46899999999999543210 01122222232
Q ss_pred hhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccc--cccceeeecCCCC
Q 003070 205 GKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEI--QWALQAVSIPSGG 255 (850)
Q Consensus 205 ~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr--~W~LQ~V~Vps~~ 255 (850)
....... ....|-+||||..- -.-||||=| ||| +.|.|+-|.
T Consensus 1762 Dg~~~~~---s~~~VIVIAATNRP-----D~LDPALLRPGRFD-R~I~Ir~Pd 1805 (2281)
T CHL00206 1762 SRDCERC---STRNILVIASTHIP-----QKVDPALIAPNKLN-TCIKIRRLL 1805 (2281)
T ss_pred ccccccC---CCCCEEEEEeCCCc-----ccCCHhHcCCCCCC-eEEEeCCCC
Confidence 2221111 23358899998642 367999998 887 556665444
No 249
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0064 Score=69.02 Aligned_cols=121 Identities=15% Similarity=0.192 Sum_probs=79.8
Q ss_pred CCCchHHHHHHHHHHHHhhhC-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCc--eEEecCccccC------------
Q 003070 486 VPWQFDSIHSIVEVLVECKSA-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDL--LFHIDMRKRND------------ 550 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~--~i~idms~~~~------------ 550 (850)
+++=++=+.+++..+.-.-.| +|. .+++.||+|+|||-+++-+++.+..+... .++|++-++..
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~-n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPS-NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCc-cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 344444555555555544333 555 48899999999999999999999887443 59999887643
Q ss_pred -CCC--C-----chhhHHHHhhh-CCCEEEeeccccccCH---HHHHHHHhhhccCccCceEEEEecCCC
Q 003070 551 -GVS--S-----HSEMLMGTLKN-YEKLVVLVEDIDLADP---QFIKILADGFETENFGKVIFVLTKGDS 608 (850)
Q Consensus 551 -~~~--~-----~~~~l~e~vr~-~P~sVvlldeiekA~~---~v~~~l~q~~d~G~l~n~Iii~Tsn~~ 608 (850)
..| | +...|.+.+.+ +...||.||||+.--. ++.-.|.++-+.+ =.+.++|+.+|..
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~-~~~v~vi~i~n~~ 166 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN-KVKVSIIAVSNDD 166 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc-ceeEEEEEEeccH
Confidence 111 1 22356666655 6677999999996433 3555555555555 2267888888853
No 250
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.87 E-value=0.0035 Score=75.00 Aligned_cols=87 Identities=16% Similarity=0.102 Sum_probs=69.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEe-cCccccC-----------CCCCchhhHHHHhhhCCCEEEeec
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHI-DMRKRND-----------GVSSHSEMLMGTLKNYEKLVVLVE 574 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~i-dms~~~~-----------~~~~~~~~l~e~vr~~P~sVvlld 574 (850)
++.|-+||.||||+|||++..++...+-....+++.+ |.-||.- .+.+|...|-.++|+.|- ||++.
T Consensus 314 ~~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPD-vI~vG 392 (564)
T TIGR02538 314 KPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDPD-IIMVG 392 (564)
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecCCCceEEEeccccCCCHHHHHHHHhccCCC-EEEeC
Confidence 3568999999999999999888877775445566665 5545421 124577789999999998 99999
Q ss_pred cccccCHHHHHHHHhhhccCcc
Q 003070 575 DIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 575 eiekA~~~v~~~l~q~~d~G~l 596 (850)
||- |++.....+++..+|++
T Consensus 393 EiR--d~eta~~a~~aa~tGHl 412 (564)
T TIGR02538 393 EIR--DLETAEIAIKAAQTGHL 412 (564)
T ss_pred CCC--CHHHHHHHHHHHHcCCc
Confidence 998 88888999999999997
No 251
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.87 E-value=0.00077 Score=67.32 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=39.7
Q ss_pred CCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccc
Q 003070 486 VPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR 548 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~ 548 (850)
.+|=++.+..+...+. +..+...-.+++.|+.|+|||.+.+++...+-.....++++++...
T Consensus 2 fvgR~~e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 4566778888888887 4444445789999999999999999998888665444777765544
No 252
>PF05729 NACHT: NACHT domain
Probab=96.86 E-value=0.003 Score=61.56 Aligned_cols=96 Identities=17% Similarity=0.294 Sum_probs=65.7
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCC------CceEEecCccccCCC----------------CCch-hhHHHHhhhCCC
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGST------DLLFHIDMRKRNDGV----------------SSHS-EMLMGTLKNYEK 568 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~------~~~i~idms~~~~~~----------------~~~~-~~l~e~vr~~P~ 568 (850)
+++.|+.|+|||.+++.++..+-... ...+.+.++...... ..+. ..+...+.+++.
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 67899999999999999997665443 233455555432110 0111 135566778889
Q ss_pred EEEeeccccccCHH--------HHHHHHhhhccCccCceEEEEecCC
Q 003070 569 LVVLVEDIDLADPQ--------FIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 569 sVvlldeiekA~~~--------v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.+|+||.+|..... +...|.+.+....+.++=+|+||+.
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 99999999987764 3446777777656778888888874
No 253
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0036 Score=74.17 Aligned_cols=151 Identities=13% Similarity=0.141 Sum_probs=109.2
Q ss_pred CcHHHHHHHHH--HH---------hc---CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccc
Q 003070 70 VSKEDIKLVFE--VF---------LR---KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTL 135 (850)
Q Consensus 70 gRdeeirrVie--IL---------~R---r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~ 135 (850)
|.-|++++.++ |+ .| ..-+-.+|=|+||.|||-+++.+|.- .++.|+++--..|
T Consensus 437 GGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne----------~~~nFlsvkgpEL-- 504 (693)
T KOG0730|consen 437 GGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE----------AGMNFLSVKGPEL-- 504 (693)
T ss_pred cCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh----------hcCCeeeccCHHH--
Confidence 78899999988 33 22 23456899999999999999999764 4456777654433
Q ss_pred cccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCC
Q 003070 136 RFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSAS 215 (850)
Q Consensus 136 ~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~a 215 (850)
=.++=||-|.-+.++-+..++. .+.|+|+|||-.+.++.+.+. .++.+++++-+=+-+-... .
T Consensus 505 ~sk~vGeSEr~ir~iF~kAR~~----aP~IiFfDEiDsi~~~R~g~~-----------~~v~~RVlsqLLtEmDG~e--~ 567 (693)
T KOG0730|consen 505 FSKYVGESERAIREVFRKARQV----APCIIFFDEIDALAGSRGGSS-----------SGVTDRVLSQLLTEMDGLE--A 567 (693)
T ss_pred HHHhcCchHHHHHHHHHHHhhc----CCeEEehhhHHhHhhccCCCc-----------cchHHHHHHHHHHHccccc--c
Confidence 2355799999999999999983 459999999999999874211 1477887544444333221 4
Q ss_pred CCeEEEEecccHHHHHhhhhcCCcccc--cccceeeecCCCC
Q 003070 216 STRVWLMATASYQTYMKCQMRQPPLEI--QWALQAVSIPSGG 255 (850)
Q Consensus 216 rG~lwlIGatT~eeY~K~iekdPaLEr--~W~LQ~V~Vps~~ 255 (850)
...|-+||||.-- ..-||||-| |+| +.+.||-|.
T Consensus 568 ~k~V~ViAATNRp-----d~ID~ALlRPGRlD-~iiyVplPD 603 (693)
T KOG0730|consen 568 LKNVLVIAATNRP-----DMIDPALLRPGRLD-RIIYVPLPD 603 (693)
T ss_pred cCcEEEEeccCCh-----hhcCHHHcCCcccc-eeEeecCcc
Confidence 4579999998632 367899999 776 778887766
No 254
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.80 E-value=0.0029 Score=68.17 Aligned_cols=84 Identities=15% Similarity=0.195 Sum_probs=62.0
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEec-CccccC------------CCCCchhhHHHHhhhCCCEEEeecc
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID-MRKRND------------GVSSHSEMLMGTLKNYEKLVVLVED 575 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id-ms~~~~------------~~~~~~~~l~e~vr~~P~sVvllde 575 (850)
.+-++|.||+|+|||++.++|.+.+-.....++.+. --|+.- ...+|.+.|..++|.+|- +|++.|
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD-~iiigE 205 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPD-VIIIGE 205 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--S-EEEESC
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCCC-cccccc
Confidence 478999999999999999999998876646666663 334311 123566789999999996 999999
Q ss_pred ccccCHHHHHHHHhhhccCcc
Q 003070 576 IDLADPQFIKILADGFETENF 596 (850)
Q Consensus 576 iekA~~~v~~~l~q~~d~G~l 596 (850)
|--+ +.... ++++.+|..
T Consensus 206 iR~~--e~~~~-~~a~~tGh~ 223 (270)
T PF00437_consen 206 IRDP--EAAEA-IQAANTGHL 223 (270)
T ss_dssp E-SC--HHHHH-HHHHHTT-E
T ss_pred cCCH--hHHHH-HHhhccCCc
Confidence 9854 77777 999999987
No 255
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.79 E-value=0.0038 Score=68.26 Aligned_cols=83 Identities=7% Similarity=0.013 Sum_probs=51.9
Q ss_pred CcHHHHHHHHHHHhc-----CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHH
Q 003070 70 VSKEDIKLVFEVFLR-----KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVE 144 (850)
Q Consensus 70 gRdeeirrVieIL~R-----r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE 144 (850)
|+++.+.++...|.- ++-++.+|.|+||+|||.++..++..+.. .+..+..+.+ ...++
T Consensus 8 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~----------~~~~~~~~~~----~~~~~-- 71 (305)
T TIGR00635 8 GQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV----------NLKITSGPAL----EKPGD-- 71 (305)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC----------CEEEeccchh----cCchh--
Confidence 788888877776641 22346799999999999999999886531 1222221111 11222
Q ss_pred HHHHHHHHHHhccccCCCCeEEEecchhhhhc
Q 003070 145 MNLTELKRKVDSLTSVGGGAIIYTGDLKWTVD 176 (850)
Q Consensus 145 ~RlkeL~~~V~~~~~~~~gvILfIdELh~lvg 176 (850)
+...+... +.+.||||||+|.+-.
T Consensus 72 -----l~~~l~~~---~~~~vl~iDEi~~l~~ 95 (305)
T TIGR00635 72 -----LAAILTNL---EEGDVLFIDEIHRLSP 95 (305)
T ss_pred -----HHHHHHhc---ccCCEEEEehHhhhCH
Confidence 22333332 4578999999998754
No 256
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.79 E-value=0.0043 Score=76.10 Aligned_cols=135 Identities=10% Similarity=0.144 Sum_probs=78.6
Q ss_pred CcHHHH---HHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHH
Q 003070 70 VSKEDI---KLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMN 146 (850)
Q Consensus 70 gRdeei---rrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~R 146 (850)
|.+..+ +.+...+..++-.+-+|.|+||+|||.++..++..+. .+++.++-. ..+. .++.+.
T Consensus 32 GQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~----------~~f~~lna~---~~~i--~dir~~ 96 (725)
T PRK13341 32 GQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR----------AHFSSLNAV---LAGV--KDLRAE 96 (725)
T ss_pred CcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc----------Ccceeehhh---hhhh--HHHHHH
Confidence 566555 2444555555556889999999999999999987642 234444311 1111 233333
Q ss_pred HHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEeccc
Q 003070 147 LTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATAS 226 (850)
Q Consensus 147 lkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT 226 (850)
++.....+.. .+.+.||||||+|.+-... - ..||+ .. ..|.+.+||+||
T Consensus 97 i~~a~~~l~~---~~~~~IL~IDEIh~Ln~~q------------------Q-------daLL~-~l--E~g~IiLI~aTT 145 (725)
T PRK13341 97 VDRAKERLER---HGKRTILFIDEVHRFNKAQ------------------Q-------DALLP-WV--ENGTITLIGATT 145 (725)
T ss_pred HHHHHHHhhh---cCCceEEEEeChhhCCHHH------------------H-------HHHHH-Hh--cCceEEEEEecC
Confidence 3333222222 1457899999999873311 1 12443 33 358899999998
Q ss_pred HHHHHhhhhcCCcccccccceeeecCCCC
Q 003070 227 YQTYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 227 ~eeY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
..-|.+. .|+|-.| .+.+.++..+
T Consensus 146 enp~~~l---~~aL~SR--~~v~~l~pLs 169 (725)
T PRK13341 146 ENPYFEV---NKALVSR--SRLFRLKSLS 169 (725)
T ss_pred CChHhhh---hhHhhcc--ccceecCCCC
Confidence 7666543 3566554 3555565544
No 257
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.0037 Score=68.46 Aligned_cols=95 Identities=17% Similarity=0.236 Sum_probs=69.9
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchh--------hHHHHhhhCCCEEEeeccccc
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSE--------MLMGTLKNYEKLVVLVEDIDL 578 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~--------~l~e~vr~~P~sVvlldeiek 578 (850)
|+---+++.||.|.|||-+|+++|..+ .-+|+.+-+++..+ .|.| +...| |+.--+|+|+||||-
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~m---g~nfl~v~ss~lv~---kyiGEsaRlIRemf~yA-~~~~pciifmdeiDA 236 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAATM---GVNFLKVVSSALVD---KYIGESARLIRDMFRYA-REVIPCIIFMDEIDA 236 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHhc---CCceEEeeHhhhhh---hhcccHHHHHHHHHHHH-hhhCceEEeehhhhh
Confidence 444556789999999999999999998 46777776666422 2332 44444 444449999999996
Q ss_pred -----------cCHHHHHHHHhhhccCc----cCceEEEEecCCC
Q 003070 579 -----------ADPQFIKILADGFETEN----FGKVIFVLTKGDS 608 (850)
Q Consensus 579 -----------A~~~v~~~l~q~~d~G~----l~n~Iii~Tsn~~ 608 (850)
|+..|+.-|+..++.=. +..+=+|||+|..
T Consensus 237 igGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrp 281 (388)
T KOG0651|consen 237 IGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRP 281 (388)
T ss_pred hccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCc
Confidence 78999998888777322 4578899999954
No 258
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.73 E-value=0.0073 Score=58.33 Aligned_cols=95 Identities=15% Similarity=0.174 Sum_probs=58.4
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC------------------------CCCCchhh----HHHHh
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------------------------GVSSHSEM----LMGTL 563 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~------------------------~~~~~~~~----l~e~v 563 (850)
+++.||+|+|||.++.+++..+--.....+.+++..... ........ .....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 578999999999999999987743344555555432100 00001111 23445
Q ss_pred hhCCCEEEeecccccc-----------CHHHHHHHHhhhccCccCceEEEEecC
Q 003070 564 KNYEKLVVLVEDIDLA-----------DPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 564 r~~P~sVvlldeiekA-----------~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
..+++.+|++||+... +..+...|.+.++..+=.++-+|+|++
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~ 135 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQ 135 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 6677889999999943 344556666665554423666777776
No 259
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.004 Score=72.12 Aligned_cols=82 Identities=24% Similarity=0.309 Sum_probs=62.2
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEe----cCccccCC-CCCchhhHHHHhhhCCCEEEeecccccc---
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHI----DMRKRNDG-VSSHSEMLMGTLKNYEKLVVLVEDIDLA--- 579 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~i----dms~~~~~-~~~~~~~l~e~vr~~P~sVvlldeiekA--- 579 (850)
+..++||.||.|+|||.||..+|.. |.=.||+| ||.-+.|+ ..-|+...-+--.+.|.|||++|+||.-
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~---S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~ 613 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS---SDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY 613 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh---cCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc
Confidence 6799999999999999999999963 44577877 44333221 2235555555568999999999999973
Q ss_pred ---CHHHHHHHHhhhc
Q 003070 580 ---DPQFIKILADGFE 592 (850)
Q Consensus 580 ---~~~v~~~l~q~~d 592 (850)
-|.+-|.++|++-
T Consensus 614 vpIGPRfSN~vlQaL~ 629 (744)
T KOG0741|consen 614 VPIGPRFSNLVLQALL 629 (744)
T ss_pred cccCchhhHHHHHHHH
Confidence 5888999999763
No 260
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0026 Score=79.22 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=70.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchh-------hHHHHhhhCCCEEEeecccc--
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSE-------MLMGTLKNYEKLVVLVEDID-- 577 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~-------~l~e~vr~~P~sVvlldeie-- 577 (850)
.|.|. ||.||.|+|||-+|++||..+=-.++. |.+.|++-..--.-+|| +|-|.-+++-+|||+||||+
T Consensus 298 pPrgv-L~~GppGTGkTl~araLa~~~s~~~~k-isffmrkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGl 375 (1080)
T KOG0732|consen 298 PPRGV-LFHGPPGTGKTLMARALAAACSRGNRK-ISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGL 375 (1080)
T ss_pred CCcce-eecCCCCCchhHHHHhhhhhhcccccc-cchhhhcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccc
Confidence 45555 499999999999999999998655544 67777763110011333 57777799999999999999
Q ss_pred ---------ccCHHHHHHHHhhhccCc-cCceEEEEecC
Q 003070 578 ---------LADPQFIKILADGFETEN-FGKVIFVLTKG 606 (850)
Q Consensus 578 ---------kA~~~v~~~l~q~~d~G~-l~n~Iii~Tsn 606 (850)
+-|..|.--|+-.||-=. ....++|=++|
T Consensus 376 apvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 376 APVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred cccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 556677776666655322 34888888888
No 261
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.71 E-value=0.0066 Score=70.57 Aligned_cols=92 Identities=17% Similarity=0.158 Sum_probs=76.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEe-cCccccC-----------CCCCchhhHHHHhhhCCCEEEeec
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHI-DMRKRND-----------GVSSHSEMLMGTLKNYEKLVVLVE 574 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~i-dms~~~~-----------~~~~~~~~l~e~vr~~P~sVvlld 574 (850)
+|-|-+||.||||+|||+.--++-..++....+++.+ |.=||.- .+-+|...|--.+|+.|- ||++.
T Consensus 256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPD-vImVG 334 (500)
T COG2804 256 RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPD-VIMVG 334 (500)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhccCCC-eEEEe
Confidence 6889999999999999999999999999888888887 6666521 234566678888999997 99999
Q ss_pred cccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 575 DIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 575 eiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
||. |.+--.+..||--+|++ ||||=
T Consensus 335 EIR--D~ETAeiavqAalTGHL-----VlSTl 359 (500)
T COG2804 335 EIR--DLETAEIAVQAALTGHL-----VLSTL 359 (500)
T ss_pred ccC--CHHHHHHHHHHHhcCCe-----Eeeec
Confidence 997 67888899999999998 56553
No 262
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0028 Score=76.00 Aligned_cols=90 Identities=12% Similarity=0.077 Sum_probs=69.6
Q ss_pred CcHHHHHHHHHHHhcC-------CCCCe--EEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccCh
Q 003070 70 VSKEDIKLVFEVFLRK-------KRRNT--VIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKK 140 (850)
Q Consensus 70 gRdeeirrVieIL~Rr-------~K~NP--VLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~R 140 (850)
+++.-+.....||.-+ .+-|| +|=|.||+||+-+|+.+|.. -|.||+.+|=.. +....+
T Consensus 405 ~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~----------lg~h~~evdc~e--l~~~s~ 472 (953)
T KOG0736|consen 405 GLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASE----------LGLHLLEVDCYE--LVAESA 472 (953)
T ss_pred cchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHH----------hCCceEeccHHH--Hhhccc
Confidence 6788888888888743 24454 35599999999999888765 478899988543 345567
Q ss_pred hHHHHHHHHHHHHHhccccCCCCeEEEecchhhhh
Q 003070 141 EEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175 (850)
Q Consensus 141 gefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lv 175 (850)
.-.|.+++..-..++. ..+.|||+=.+..|-
T Consensus 473 ~~~etkl~~~f~~a~~----~~pavifl~~~dvl~ 503 (953)
T KOG0736|consen 473 SHTETKLQAIFSRARR----CSPAVLFLRNLDVLG 503 (953)
T ss_pred chhHHHHHHHHHHHhh----cCceEEEEeccceee
Confidence 8889999999888875 468999999888875
No 263
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0027 Score=76.94 Aligned_cols=118 Identities=19% Similarity=0.160 Sum_probs=79.4
Q ss_pred ccCCCchHHHHHHHHHHHHhhh-------C-C-CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCC---
Q 003070 484 ENVPWQFDSIHSIVEVLVECKS-------A-K-KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG--- 551 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~-------g-k-~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~--- 551 (850)
+.|-|++||-.+|-+-|.--+. | | |-|. |++||+|+|||-||||+|-. ..-.|+.+.-||+-+.
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGv-LL~GPPGTGKTLLAKAiAGE---AgVPF~svSGSEFvE~~~g 386 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGV-LLVGPPGTGKTLLAKAIAGE---AGVPFFSVSGSEFVEMFVG 386 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCce-EEECCCCCcHHHHHHHHhcc---cCCceeeechHHHHHHhcc
Confidence 4578999999998888876654 3 3 4455 48999999999999999933 2557898888888542
Q ss_pred -CCCchhhHHHHhhhCCCEEEeeccccccC-H--------------HHHHHHHhhhccCcc--CceEEEEecC
Q 003070 552 -VSSHSEMLMGTLKNYEKLVVLVEDIDLAD-P--------------QFIKILADGFETENF--GKVIFVLTKG 606 (850)
Q Consensus 552 -~~~~~~~l~e~vr~~P~sVvlldeiekA~-~--------------~v~~~l~q~~d~G~l--~n~Iii~Tsn 606 (850)
.+.-+--|...-|.+--++|++||||--- + .-+|-|+--| +|.. .+.||+-+||
T Consensus 387 ~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~em-Dgf~~~~~vi~~a~tn 458 (774)
T KOG0731|consen 387 VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEM-DGFETSKGVIVLAATN 458 (774)
T ss_pred cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHh-cCCcCCCcEEEEeccC
Confidence 12223334445577777899999998421 1 1223332222 2222 4789999999
No 264
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0029 Score=75.23 Aligned_cols=115 Identities=20% Similarity=0.224 Sum_probs=75.7
Q ss_pred cCCCchHHHHHHHHHHHHhhh-------C--CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC----C
Q 003070 485 NVPWQFDSIHSIVEVLVECKS-------A--KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND----G 551 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~-------g--k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~----~ 551 (850)
.|-|.+||..++.+.|--.+. | -|-||+ +.||+|+|||-|||+.|-.- .-.|..+--|.+-+ -
T Consensus 151 DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvl-LvGpPGTGKTLLAkAvAgEA---~VPFf~iSGS~FVemfVGv 226 (596)
T COG0465 151 DVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVL-LVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVEMFVGV 226 (596)
T ss_pred hhcCcHHHHHHHHHHHHHHhCchhhHhccccccccee-EecCCCCCcHHHHHHHhccc---CCCceeccchhhhhhhcCC
Confidence 356777777777777766654 3 256777 79999999999999999543 45666666666533 2
Q ss_pred CCCch-hhHHHHhhhCCCEEEeeccccccC--H------------HHHHHHHhhhccCccC---ceEEEEecC
Q 003070 552 VSSHS-EMLMGTLKNYEKLVVLVEDIDLAD--P------------QFIKILADGFETENFG---KVIFVLTKG 606 (850)
Q Consensus 552 ~~~~~-~~l~e~vr~~P~sVvlldeiekA~--~------------~v~~~l~q~~d~G~l~---n~Iii~Tsn 606 (850)
+...+ +++.+|-+.-| ++||+||||.-- . +..|-||.-||- |. ..|+|-.+|
T Consensus 227 GAsRVRdLF~qAkk~aP-~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDG--F~~~~gviviaaTN 296 (596)
T COG0465 227 GASRVRDLFEQAKKNAP-CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG--FGGNEGVIVIAATN 296 (596)
T ss_pred CcHHHHHHHHHhhccCC-CeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhcc--CCCCCceEEEecCC
Confidence 33344 46667766666 999999999631 1 355666655543 32 345555566
No 265
>PRK10436 hypothetical protein; Provisional
Probab=96.62 E-value=0.0081 Score=70.18 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=67.7
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEe-cCccccC-----------CCCCchhhHHHHhhhCCCEEEeec
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHI-DMRKRND-----------GVSSHSEMLMGTLKNYEKLVVLVE 574 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~i-dms~~~~-----------~~~~~~~~l~e~vr~~P~sVvlld 574 (850)
++.|-+||.||||+|||++..++-+.+-....+++.| |.-||.- ...+|...|..++|..|- ||++.
T Consensus 216 ~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPD-vI~vG 294 (462)
T PRK10436 216 QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPD-VIMVG 294 (462)
T ss_pred hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccCCCcceEeeCCccCcCHHHHHHHHhcCCCC-EEEEC
Confidence 4578999999999999998877766665555666666 5555521 123577789999999997 99999
Q ss_pred cccccCHHHHHHHHhhhccCcc
Q 003070 575 DIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 575 eiekA~~~v~~~l~q~~d~G~l 596 (850)
||- |++.....+++..+|++
T Consensus 295 EIR--D~eta~~al~AA~TGHl 314 (462)
T PRK10436 295 EIR--DGETAEIAIKAAQTGHL 314 (462)
T ss_pred CCC--CHHHHHHHHHHHHcCCc
Confidence 997 45677788899999998
No 266
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.59 E-value=0.0032 Score=66.65 Aligned_cols=74 Identities=12% Similarity=0.255 Sum_probs=49.7
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccc---cC--------CCCCchhhHHH---Hhh--hCCCEEEe
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR---ND--------GVSSHSEMLMG---TLK--NYEKLVVL 572 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~---~~--------~~~~~~~~l~e---~vr--~~P~sVvl 572 (850)
..++||.|++|+|||.+|+.|+ ....++..|++.. .. .++.-.+.+.+ ++. -++|.+|+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~-----~~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVV 86 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP-----GKTLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIV 86 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC-----CCCEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEE
Confidence 4789999999999999999996 3445677777541 11 01111222222 333 36699999
Q ss_pred eccccccCHHHHHHH
Q 003070 573 VEDIDLADPQFIKIL 587 (850)
Q Consensus 573 ldeiekA~~~v~~~l 587 (850)
+|+|+.+...++..+
T Consensus 87 IDsI~~l~~~~~~~~ 101 (220)
T TIGR01618 87 IDNISALQNLWLENI 101 (220)
T ss_pred EecHHHHHHHHHHHH
Confidence 999999877665544
No 267
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.59 E-value=0.0088 Score=61.91 Aligned_cols=98 Identities=16% Similarity=0.193 Sum_probs=63.6
Q ss_pred CchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcccc-----CCCCCchhhHHHH
Q 003070 488 WQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRN-----DGVSSHSEMLMGT 562 (850)
Q Consensus 488 gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~-----~~~~~~~~~l~e~ 562 (850)
+|.+|+..|.. ..+..+++.||.|+|||++.+.+++.+-.....++-+-++..- +...-...-+...
T Consensus 5 ~Q~~a~~~~l~--------~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~ 76 (196)
T PF13604_consen 5 EQREAVRAILT--------SGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSF 76 (196)
T ss_dssp HHHHHHHHHHH--------CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHH
T ss_pred HHHHHHHHHHh--------cCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHH
Confidence 58888887742 2345788899999999999999999998766666666554310 0000000111111
Q ss_pred hh------------hCCCEEEeeccccccCHHHHHHHHhhhcc
Q 003070 563 LK------------NYEKLVVLVEDIDLADPQFIKILADGFET 593 (850)
Q Consensus 563 vr------------~~P~sVvlldeiekA~~~v~~~l~q~~d~ 593 (850)
+. -.++.||++||.-+.+...+..|++.+..
T Consensus 77 l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 77 LYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp TTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T
T ss_pred HhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh
Confidence 11 35568999999999999999999998877
No 268
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.58 E-value=0.026 Score=65.44 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=60.3
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhc--CCCCceEEecCcccc-----------C--CCCCc----hhhHHHHhhh-CCCE
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVF--GSTDLLFHIDMRKRN-----------D--GVSSH----SEMLMGTLKN-YEKL 569 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lf--gs~~~~i~idms~~~-----------~--~~~~~----~~~l~e~vr~-~P~s 569 (850)
..++|.||+|||||+++..||-.+- .......-+|+..|- + .-|-+ .+.+..++++ ..|.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~D 301 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDCD 301 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCCC
Confidence 4789999999999999999986553 222333444444331 0 00111 1245555543 4689
Q ss_pred EEeeccc--cccCHHHHHHHHhhhc-cCccCceEEEEecC
Q 003070 570 VVLVEDI--DLADPQFIKILADGFE-TENFGKVIFVLTKG 606 (850)
Q Consensus 570 Vvlldei--ekA~~~v~~~l~q~~d-~G~l~n~Iii~Tsn 606 (850)
+||+|-. -..+......|.+.++ .+.--.+++||+++
T Consensus 302 lVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~ 341 (424)
T PRK05703 302 VILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSAT 341 (424)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECC
Confidence 9999965 4455666666777777 33223778889887
No 269
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.58 E-value=0.0053 Score=70.72 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=52.4
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHH----HhccccCC
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRK----VDSLTSVG 161 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~----V~~~~~~~ 161 (850)
.+.|.+|+|+||+|||.+++.|+.+. +..++.+|.+.+.-.+-...+++..+..+... ++. .
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l----------~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~----a 172 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARIL----------DVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEK----A 172 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh----------CCCceecchhhcccCCcccchHHHHHHHHHHhccccHHH----c
Confidence 36789999999999999999999765 23466666554321121134566666665542 232 2
Q ss_pred CCeEEEecchhhhhcC
Q 003070 162 GGAIIYTGDLKWTVDQ 177 (850)
Q Consensus 162 ~gvILfIdELh~lvga 177 (850)
.+-|||||||+-+-..
T Consensus 173 ~~gIi~iDEIdkl~~~ 188 (412)
T PRK05342 173 QRGIVYIDEIDKIARK 188 (412)
T ss_pred CCcEEEEechhhhccc
Confidence 4569999999999754
No 270
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.56 E-value=0.0077 Score=70.86 Aligned_cols=87 Identities=14% Similarity=0.125 Sum_probs=67.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEe-cCccccC-----------CCCCchhhHHHHhhhCCCEEEeec
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHI-DMRKRND-----------GVSSHSEMLMGTLKNYEKLVVLVE 574 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~i-dms~~~~-----------~~~~~~~~l~e~vr~~P~sVvlld 574 (850)
++.|.++|.||||+|||++..++-..+-....+++.+ |--||.- .+.+|...|..++|.+|- ||++.
T Consensus 240 ~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPD-vI~vG 318 (486)
T TIGR02533 240 RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPD-IIMVG 318 (486)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeecCCCceEEEccccCccHHHHHHHHHhcCCC-EEEEe
Confidence 4567999999999999999997766664445567776 4444421 123567789999999997 99999
Q ss_pred cccccCHHHHHHHHhhhccCcc
Q 003070 575 DIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 575 eiekA~~~v~~~l~q~~d~G~l 596 (850)
||- |++.....+++..+|++
T Consensus 319 EiR--d~eta~~a~~aa~tGHl 338 (486)
T TIGR02533 319 EIR--DLETAQIAIQASLTGHL 338 (486)
T ss_pred CCC--CHHHHHHHHHHHHhCCc
Confidence 997 45677788999999998
No 271
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.54 E-value=0.02 Score=63.06 Aligned_cols=137 Identities=12% Similarity=0.106 Sum_probs=81.2
Q ss_pred CCcHHHHHHHHHHHhcCCCCCeEE-EcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHH
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNTVI-VGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNL 147 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NPVL-VGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rl 147 (850)
.|.++....+.+.+.+++-.|++| .|++|+|||.++..+++.+. ..++.++.+. .....+...+
T Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~----------~~~~~i~~~~-----~~~~~i~~~l 88 (316)
T PHA02544 24 ILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG----------AEVLFVNGSD-----CRIDFVRNRL 88 (316)
T ss_pred cCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC----------ccceEeccCc-----ccHHHHHHHH
Confidence 378888888888888766678888 59999999999999988651 2344444321 1123333444
Q ss_pred HHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccH
Q 003070 148 TELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASY 227 (850)
Q Consensus 148 keL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~ 227 (850)
++....... .++.-||+|||+|.+-.. .. ...+.++++.. .+..++|.+++.
T Consensus 89 ~~~~~~~~~---~~~~~vliiDe~d~l~~~------------------~~---~~~L~~~le~~----~~~~~~Ilt~n~ 140 (316)
T PHA02544 89 TRFASTVSL---TGGGKVIIIDEFDRLGLA------------------DA---QRHLRSFMEAY----SKNCSFIITANN 140 (316)
T ss_pred HHHHHhhcc---cCCCeEEEEECcccccCH------------------HH---HHHHHHHHHhc----CCCceEEEEcCC
Confidence 444333221 134678999999876110 11 11234555532 345788887753
Q ss_pred HHHHhhhhcCCcccccccceeeecCCCC
Q 003070 228 QTYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 228 eeY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
- . .-.|+|-+|+ +.+.++.|.
T Consensus 141 ~--~---~l~~~l~sR~--~~i~~~~p~ 161 (316)
T PHA02544 141 K--N---GIIEPLRSRC--RVIDFGVPT 161 (316)
T ss_pred h--h---hchHHHHhhc--eEEEeCCCC
Confidence 2 2 2356777765 555554443
No 272
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.54 E-value=0.003 Score=74.73 Aligned_cols=48 Identities=21% Similarity=0.161 Sum_probs=41.6
Q ss_pred CCCchHHHHHHHHHHHHhhhC--CCCeEEEEecCCchHHHHHHHHHHHHh
Q 003070 486 VPWQFDSIHSIVEVLVECKSA--KKATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~g--k~~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
+.|+++++..|.+.+..+..| .+..-|+|+||+|+|||+||+.||+.+
T Consensus 78 ~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 78 FYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred ccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 789999999999999766555 344688899999999999999999875
No 273
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.53 E-value=0.0086 Score=68.10 Aligned_cols=85 Identities=21% Similarity=0.141 Sum_probs=64.0
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcC--CCCceEEe-cCccccC----------------CCCCchhhHHHHhhhCCCE
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFG--STDLLFHI-DMRKRND----------------GVSSHSEMLMGTLKNYEKL 569 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfg--s~~~~i~i-dms~~~~----------------~~~~~~~~l~e~vr~~P~s 569 (850)
.+-+++.||||+|||++.++|.+.+-. ....++.+ |--||.- ...+|...+..++|.+|-
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD- 227 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPK- 227 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCC-
Confidence 457899999999999999999988742 23456666 3334310 011355578889999997
Q ss_pred EEeeccccccCHHHHHHHHhhhccCcc
Q 003070 570 VVLVEDIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 570 VvlldeiekA~~~v~~~l~q~~d~G~l 596 (850)
||++.||- +++....++++..+|++
T Consensus 228 ~I~vGEiR--d~et~~~al~aa~TGH~ 252 (372)
T TIGR02525 228 IIGVGEIR--DLETFQAAVLAGQSGHF 252 (372)
T ss_pred EEeeCCCC--CHHHHHHHHHHHhcCCc
Confidence 99999998 66778888999999987
No 274
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.48 E-value=0.016 Score=64.66 Aligned_cols=85 Identities=21% Similarity=0.226 Sum_probs=62.5
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHh--cCCCCceEEe-cCccccC-----------CCCCchhhHHHHhhhCCCEEEeec
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESV--FGSTDLLFHI-DMRKRND-----------GVSSHSEMLMGTLKNYEKLVVLVE 574 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~l--fgs~~~~i~i-dms~~~~-----------~~~~~~~~l~e~vr~~P~sVvlld 574 (850)
..++++.|++|+|||+++++|+..+ +...+.++.| |..|+.- ...++-+.|..++|.+|- +|++.
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD-~IivG 226 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPD-RILVG 226 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCC-EEEEe
Confidence 3689999999999999999999875 3444556655 3444311 122455688999999997 78899
Q ss_pred cccccCHHHHHHHHhhhccCccC
Q 003070 575 DIDLADPQFIKILADGFETENFG 597 (850)
Q Consensus 575 eiekA~~~v~~~l~q~~d~G~l~ 597 (850)
||--. +.+. +++++.+|...
T Consensus 227 EiR~~--Ea~~-~l~A~~tGh~G 246 (319)
T PRK13894 227 EVRGP--EALD-LLMAWNTGHEG 246 (319)
T ss_pred ccCCH--HHHH-HHHHHHcCCCc
Confidence 99854 5555 68999999763
No 275
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.48 E-value=0.0058 Score=56.39 Aligned_cols=81 Identities=12% Similarity=-0.009 Sum_probs=53.6
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccc------------cccChhHHHHHHHHHHHHH
Q 003070 87 RRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTL------------RFMKKEEVEMNLTELKRKV 154 (850)
Q Consensus 87 K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~------------~~~~RgefE~RlkeL~~~V 154 (850)
+++.+|+|++|+|||.+++.++..+.... ..++.++.+.... .......-...+..+...+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-------GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-------CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998877654 2345554432110 0011123344555666666
Q ss_pred hccccCCCCeEEEecchhhhhcCC
Q 003070 155 DSLTSVGGGAIIYTGDLKWTVDQQ 178 (850)
Q Consensus 155 ~~~~~~~~gvILfIdELh~lvgag 178 (850)
+. ....|++|||++.+....
T Consensus 75 ~~----~~~~viiiDei~~~~~~~ 94 (148)
T smart00382 75 RK----LKPDVLILDEITSLLDAE 94 (148)
T ss_pred Hh----cCCCEEEEECCcccCCHH
Confidence 64 235999999999987754
No 276
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.48 E-value=0.0099 Score=66.20 Aligned_cols=83 Identities=7% Similarity=0.006 Sum_probs=52.7
Q ss_pred CCcHHHHHHHHHHHhc-----CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHH
Q 003070 69 SVSKEDIKLVFEVFLR-----KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEV 143 (850)
Q Consensus 69 ~gRdeeirrVieIL~R-----r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~Rgef 143 (850)
.|++++++++...+.. ..-++.+|.|+||+|||.++..+|..+. ..++...-..+ ...++
T Consensus 28 vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~----------~~~~~~~~~~~----~~~~~- 92 (328)
T PRK00080 28 IGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG----------VNIRITSGPAL----EKPGD- 92 (328)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC----------CCeEEEecccc----cChHH-
Confidence 3899988887766652 1234678999999999999999988763 22222221111 11222
Q ss_pred HHHHHHHHHHHhccccCCCCeEEEecchhhhh
Q 003070 144 EMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175 (850)
Q Consensus 144 E~RlkeL~~~V~~~~~~~~gvILfIdELh~lv 175 (850)
+...+... +.+-||||||+|.+-
T Consensus 93 ------l~~~l~~l---~~~~vl~IDEi~~l~ 115 (328)
T PRK00080 93 ------LAAILTNL---EEGDVLFIDEIHRLS 115 (328)
T ss_pred ------HHHHHHhc---ccCCEEEEecHhhcc
Confidence 22333332 457899999999884
No 277
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.47 E-value=0.01 Score=66.28 Aligned_cols=97 Identities=8% Similarity=0.085 Sum_probs=61.7
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccC-hhHHHHHHHHHHHHHhccccCCCCe
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMK-KEEVEMNLTELKRKVDSLTSVGGGA 164 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~-RgefE~RlkeL~~~V~~~~~~~~gv 164 (850)
+-+.-||-|.||+|||.+++-++.--.. + ..++|+| ++......+ |+-||.-=++ ..+ -+..-
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~---~----Syrfvel--SAt~a~t~dvR~ife~aq~~-~~l------~krkT 224 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKK---H----SYRFVEL--SATNAKTNDVRDIFEQAQNE-KSL------TKRKT 224 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCC---C----ceEEEEE--eccccchHHHHHHHHHHHHH-Hhh------hccee
Confidence 4455688899999999988666543221 1 1567765 444333344 7777743222 111 14579
Q ss_pred EEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEeccc
Q 003070 165 IIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATAS 226 (850)
Q Consensus 165 ILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT 226 (850)
||||||+|-+=-.. . .++=|+- ..|.|.+|||||
T Consensus 225 ilFiDEiHRFNksQ---------------Q-----------D~fLP~V--E~G~I~lIGATT 258 (554)
T KOG2028|consen 225 ILFIDEIHRFNKSQ---------------Q-----------DTFLPHV--ENGDITLIGATT 258 (554)
T ss_pred EEEeHHhhhhhhhh---------------h-----------hccccee--ccCceEEEeccc
Confidence 99999999973311 1 2455665 469999999987
No 278
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.41 E-value=0.022 Score=61.47 Aligned_cols=139 Identities=12% Similarity=0.144 Sum_probs=73.1
Q ss_pred HHHHHHHhc-CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcE-EEEe------e--------cccccccccC
Q 003070 76 KLVFEVFLR-KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTH-VIKF------H--------FAPVTLRFMK 139 (850)
Q Consensus 76 rrVieIL~R-r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~-visL------d--------l~~l~~~~~~ 139 (850)
.|+||.|.- .+.-..+|+|++|+|||.+++.++..+.... .+.. ++.+ + ...+.++.+.
T Consensus 4 ~~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~-----fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~ 78 (249)
T cd01128 4 TRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNH-----PEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFD 78 (249)
T ss_pred hhheeeecccCCCCEEEEECCCCCCHHHHHHHHHhcccccc-----CCeEEEEEEccCCCccHHHHHHHhccEEEEecCC
Confidence 356777754 3567899999999999998888887776541 1122 2221 0 0111111122
Q ss_pred hhHHHHHHH---HHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCcc-ccCCchhhhhHHhhhhcccccCC-
Q 003070 140 KEEVEMNLT---ELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIA-SCYNPINHLVSEVGKLVSDCNSA- 214 (850)
Q Consensus 140 RgefE~Rlk---eL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~-~~~~a~~~~V~El~nLLkp~l~~- 214 (850)
. .-..|+. .+....+.+...|..||||||||+-+..+....+. ..|... ++|.+- +..++.+++..++..
T Consensus 79 ~-~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~--~~G~~~sgG~~~~--~~~~~~q~~~~Ar~~~ 153 (249)
T cd01128 79 E-PPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVP--PSGKILSGGVDAN--ALHKPKRFFGAARNIE 153 (249)
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccc--cCCCCCCCCcChh--hhhhhHHHHHHhcCCC
Confidence 1 2223332 23333333222477999999999999876532110 011111 124331 123445666544321
Q ss_pred CCCeEEEEec
Q 003070 215 SSTRVWLMAT 224 (850)
Q Consensus 215 arG~lwlIGa 224 (850)
..|-||.+.|
T Consensus 154 ~~gsIt~l~T 163 (249)
T cd01128 154 EGGSLTIIAT 163 (249)
T ss_pred CCCceEEeee
Confidence 3578999944
No 279
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.0042 Score=67.59 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=50.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc----ccCCCCCchhhHHHHhhhCCCEEEeeccccc
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK----RNDGVSSHSEMLMGTLKNYEKLVVLVEDIDL 578 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~----~~~~~~~~~~~l~e~vr~~P~sVvlldeiek 578 (850)
+|---+|+.||+|+||++||||+|-.- ..-|.++..|. .+...--.|-.|-|..|++--|+||+||||-
T Consensus 164 ~PwrgiLLyGPPGTGKSYLAKAVATEA---nSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 164 KPWRGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred CcceeEEEeCCCCCcHHHHHHHHHhhc---CCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 345558899999999999999999654 24456664332 3322222456788999999999999999984
No 280
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.40 E-value=0.0054 Score=66.30 Aligned_cols=97 Identities=14% Similarity=0.188 Sum_probs=75.0
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcccc------------------C---CCCCchhh--HHH-----
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRN------------------D---GVSSHSEM--LMG----- 561 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~------------------~---~~~~~~~~--l~e----- 561 (850)
--++|.||+|.||++.+.+|-+.+||..-.=++|++..+- | +..|+.|+ +-+
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 5799999999999999999999999965555777765431 0 23455552 111
Q ss_pred -------HhhhCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 562 -------TLKNYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 562 -------~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.--++||-||++-|.|+--.+.|..|.+-||. .-.|+=+||.+|.
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk-Ys~~~RlIl~cns 166 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEK-YSSNCRLILVCNS 166 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHH-HhcCceEEEEecC
Confidence 12467999999999999999999999999985 2358889999994
No 281
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.39 E-value=0.012 Score=60.28 Aligned_cols=84 Identities=15% Similarity=0.198 Sum_probs=59.0
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEe-cCccccC-------------C-----CCCchhhHHHHhhhCCCE
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHI-DMRKRND-------------G-----VSSHSEMLMGTLKNYEKL 569 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~i-dms~~~~-------------~-----~~~~~~~l~e~vr~~P~s 569 (850)
..+++|.||+|+|||++.++|+.++-.+ ...+.+ |..++.- . .-++.+.+..++|.+| .
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~p-d 102 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRP-D 102 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCC-C
Confidence 4688999999999999999999988643 344444 2222110 0 1124456778899999 5
Q ss_pred EEeeccccccCHHHHHHHHhhhccCccC
Q 003070 570 VVLVEDIDLADPQFIKILADGFETENFG 597 (850)
Q Consensus 570 VvlldeiekA~~~v~~~l~q~~d~G~l~ 597 (850)
+|++.||-- ++.+. ++++..+|...
T Consensus 103 ~i~igEir~--~ea~~-~~~a~~tGh~g 127 (186)
T cd01130 103 RIIVGEVRG--GEALD-LLQAMNTGHPG 127 (186)
T ss_pred EEEEEccCc--HHHHH-HHHHHhcCCCC
Confidence 889999974 55655 67888999764
No 282
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.39 E-value=0.011 Score=68.50 Aligned_cols=43 Identities=7% Similarity=0.066 Sum_probs=37.8
Q ss_pred CcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhC
Q 003070 70 VSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERG 114 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G 114 (850)
..++++..++..|.+ ++|.+|.|.||+|||-+++.|+..+...
T Consensus 179 i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~ 221 (459)
T PRK11331 179 IPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGE 221 (459)
T ss_pred CCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 578889999988885 8899999999999999999999987643
No 283
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0074 Score=65.56 Aligned_cols=119 Identities=14% Similarity=0.162 Sum_probs=82.8
Q ss_pred CCCchHHHHHHHHHHHHhhh--------C-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc----ccCCC
Q 003070 486 VPWQFDSIHSIVEVLVECKS--------A-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK----RNDGV 552 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~--------g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~----~~~~~ 552 (850)
|.|=+.-|.+|-++|..--. | ||---.++.|++|+|||-||||.|..- ..-|+|+=-|+ |-..+
T Consensus 187 iGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT---SATFlRvvGseLiQkylGdG 263 (440)
T KOG0726|consen 187 IGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT---SATFLRVVGSELIQKYLGDG 263 (440)
T ss_pred cccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc---chhhhhhhhHHHHHHHhccc
Confidence 45555566667776654332 3 554445689999999999999999765 46678887775 33334
Q ss_pred CCchhhHHHHhhhCCCEEEeeccccc-----------cCHHHHHHHHhhhcc--Cc--cCceEEEEecCC
Q 003070 553 SSHSEMLMGTLKNYEKLVVLVEDIDL-----------ADPQFIKILADGFET--EN--FGKVIFVLTKGD 607 (850)
Q Consensus 553 ~~~~~~l~e~vr~~P~sVvlldeiek-----------A~~~v~~~l~q~~d~--G~--l~n~Iii~Tsn~ 607 (850)
|-.|-+|......+--|+||+||||- ...++|.-+|..+.. |- -.+.=+||.+|.
T Consensus 264 pklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnr 333 (440)
T KOG0726|consen 264 PKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNR 333 (440)
T ss_pred hHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccc
Confidence 45666777777788889999999996 356777776654432 11 248889999993
No 284
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=96.37 E-value=0.041 Score=66.15 Aligned_cols=84 Identities=12% Similarity=0.088 Sum_probs=59.7
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCC--------------CC-CchhhHHHHhhhCCCEEEe
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG--------------VS-SHSEMLMGTLKNYEKLVVL 572 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~--------------~~-~~~~~l~e~vr~~P~sVvl 572 (850)
..|=+++-|+-|.||+.++++|+.+|=. ...|+++-.+--+.. .+ .--|.|++| -.-|++
T Consensus 24 ~~gGv~i~g~~G~~ks~~~r~l~~llp~-~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A----h~GvL~ 98 (584)
T PRK13406 24 GLGGVVLRARAGPVRDRWLAALRALLPA-GTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA----DGGVLV 98 (584)
T ss_pred ccceEEEEcCCCcHHHHHHHHHHHhcCC-CCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec----cCCEEE
Confidence 4577889999999999999999999833 235554433321110 00 011233322 235999
Q ss_pred eccccccCHHHHHHHHhhhccCcc
Q 003070 573 VEDIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 573 ldeiekA~~~v~~~l~q~~d~G~l 596 (850)
|||+..+++.+++.|+|+|++|..
T Consensus 99 lDe~n~~~~~~~~aLleame~G~v 122 (584)
T PRK13406 99 LAMAERLEPGTAARLAAALDTGEV 122 (584)
T ss_pred ecCcccCCHHHHHHHHHHHhCCcE
Confidence 999999999999999999999986
No 285
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.33 E-value=0.033 Score=64.15 Aligned_cols=97 Identities=11% Similarity=0.103 Sum_probs=60.4
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh-cCCCCceEEecCcccc-----------C--CCCCc----hhhHHHHhhhCCCEEE
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV-FGSTDLLFHIDMRKRN-----------D--GVSSH----SEMLMGTLKNYEKLVV 571 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l-fgs~~~~i~idms~~~-----------~--~~~~~----~~~l~e~vr~~P~sVv 571 (850)
..++|.||+|+|||++|..||... +.......-+++..|- + .-|-+ ...+.++++++-|.+|
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 568899999999999999999643 4333333334444331 1 11111 2356677777889999
Q ss_pred eec--cccccCHHHHHHHHhhhccC---ccCceEEEEecC
Q 003070 572 LVE--DIDLADPQFIKILADGFETE---NFGKVIFVLTKG 606 (850)
Q Consensus 572 lld--eiekA~~~v~~~l~q~~d~G---~l~n~Iii~Tsn 606 (850)
|+| -.-.-+..-...|...++.- .--++++||.++
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt 343 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSST 343 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCC
Confidence 999 44444445555555554432 123788999887
No 286
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.0036 Score=69.92 Aligned_cols=96 Identities=17% Similarity=0.192 Sum_probs=61.6
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCC
Q 003070 475 RSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSS 554 (850)
Q Consensus 475 l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~ 554 (850)
|+.+.+.|++.|+=+-.--.-.+ ..+.-+|.-=.|+.||+|+|||.|||++|.-- ..+||.++|+.-.+.--|
T Consensus 97 Le~v~~~L~e~VilPlr~pelF~----~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea---ga~fInv~~s~lt~KWfg 169 (386)
T KOG0737|consen 97 LEEVKDALQELVILPLRRPELFA----KGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA---GANFINVSVSNLTSKWFG 169 (386)
T ss_pred hHHHHHHHHHHHhhcccchhhhc----ccccccCCccceecCCCCchHHHHHHHHHHHc---CCCcceeeccccchhhHH
Confidence 66777788777765533322222 11111455556688999999999999999876 678999999964321001
Q ss_pred chhhHHHHhh-----hCCCEEEeeccccc
Q 003070 555 HSEMLMGTLK-----NYEKLVVLVEDIDL 578 (850)
Q Consensus 555 ~~~~l~e~vr-----~~P~sVvlldeiek 578 (850)
-...|+.||- =.| ++||+||||.
T Consensus 170 E~eKlv~AvFslAsKl~P-~iIFIDEvds 197 (386)
T KOG0737|consen 170 EAQKLVKAVFSLASKLQP-SIIFIDEVDS 197 (386)
T ss_pred HHHHHHHHHHhhhhhcCc-ceeehhhHHH
Confidence 1124444443 334 5999999985
No 287
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.23 E-value=0.026 Score=62.43 Aligned_cols=84 Identities=24% Similarity=0.310 Sum_probs=60.9
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcC--CCCceEEe-cCcccc------------CCCCCchhhHHHHhhhCCCEEEeec
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFG--STDLLFHI-DMRKRN------------DGVSSHSEMLMGTLKNYEKLVVLVE 574 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfg--s~~~~i~i-dms~~~------------~~~~~~~~~l~e~vr~~P~sVvlld 574 (850)
..+++.||+|+|||+++++|...+-. ....++.+ |..|.. ....++.+.|..++|.+|- +|++.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD-~iivG 211 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPD-RIIVG 211 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCC-EEEEe
Confidence 46889999999999999999988743 24455555 333321 0111566789999999998 77799
Q ss_pred cccccCHHHHHHHHhhhccCccC
Q 003070 575 DIDLADPQFIKILADGFETENFG 597 (850)
Q Consensus 575 eiekA~~~v~~~l~q~~d~G~l~ 597 (850)
||-- ++.+. +++++.+|...
T Consensus 212 EiR~--~ea~~-~l~a~~tGh~G 231 (299)
T TIGR02782 212 EVRG--GEALD-LLKAWNTGHPG 231 (299)
T ss_pred ccCC--HHHHH-HHHHHHcCCCC
Confidence 9985 45555 58999999763
No 288
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.20 E-value=0.028 Score=62.87 Aligned_cols=83 Identities=17% Similarity=0.264 Sum_probs=59.7
Q ss_pred EEEEecCCchHHHHHHHHHHHHhc--CCCCceEEe-cCccccC-----------CCCCchhhHHHHhhhCCCEEEeeccc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVF--GSTDLLFHI-DMRKRND-----------GVSSHSEMLMGTLKNYEKLVVLVEDI 576 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lf--gs~~~~i~i-dms~~~~-----------~~~~~~~~l~e~vr~~P~sVvlldei 576 (850)
-+++.|+||+|||++.++|+..+. ...+.++.+ |-.|..- ..-+|-+.+..++|.+|- +|++-||
T Consensus 146 nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD-~IivGEi 224 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPD-RIIVGEV 224 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCC-EEEEeec
Confidence 589999999999999999999884 223455555 3444211 112355678899999998 6778999
Q ss_pred cccCHHHHHHHHhhhccCccC
Q 003070 577 DLADPQFIKILADGFETENFG 597 (850)
Q Consensus 577 ekA~~~v~~~l~q~~d~G~l~ 597 (850)
--. +.+. +++++.+|...
T Consensus 225 Rg~--ea~~-~l~a~~tGh~G 242 (323)
T PRK13833 225 RDG--AALT-LLKAWNTGHPG 242 (323)
T ss_pred CCH--HHHH-HHHHHcCCCCc
Confidence 743 5554 68999999764
No 289
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.0085 Score=64.33 Aligned_cols=94 Identities=13% Similarity=0.164 Sum_probs=68.9
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccc----cCCCCCchhhHHHHhhhCCCEEEeeccccc--------
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR----NDGVSSHSEMLMGTLKNYEKLVVLVEDIDL-------- 578 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~----~~~~~~~~~~l~e~vr~~P~sVvlldeiek-------- 578 (850)
-.|+.||+|+|||-+|+|.|.-- ..-|||+=-||. -..+.-.|-.|.+..|.+--++|||||||-
T Consensus 213 gvllygppgtgktl~aravanrt---dacfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfdd 289 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRT---DACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDD 289 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhccc---CceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccC
Confidence 34578999999999999999654 567899887763 111122344678888999999999999985
Q ss_pred ---cCHHHHHHHHhhhcc--Cc--cCceEEEEecCC
Q 003070 579 ---ADPQFIKILADGFET--EN--FGKVIFVLTKGD 607 (850)
Q Consensus 579 ---A~~~v~~~l~q~~d~--G~--l~n~Iii~Tsn~ 607 (850)
.|.+||.-+|..+.. |- -.|.=++|.+|-
T Consensus 290 g~ggdnevqrtmleli~qldgfdprgnikvlmatnr 325 (435)
T KOG0729|consen 290 GAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNR 325 (435)
T ss_pred CCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCC
Confidence 467888877776643 21 138888888883
No 290
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.18 E-value=0.0086 Score=56.58 Aligned_cols=85 Identities=13% Similarity=0.103 Sum_probs=49.4
Q ss_pred CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeeccccc------------cc--ccChhHHHHHHHHH
Q 003070 85 KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVT------------LR--FMKKEEVEMNLTEL 150 (850)
Q Consensus 85 r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~------------~~--~~~RgefE~RlkeL 150 (850)
++++..+|.|++|+|||.+++.+++....-..+.. ...++.+++.... ++ ...+...++-++.+
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~ 79 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKN--HPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLL 79 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC--CEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC--CCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHH
Confidence 46788999999999999999999998754211101 4556666643211 00 01113344455566
Q ss_pred HHHHhccccCCCCeEEEecchhhhh
Q 003070 151 KRKVDSLTSVGGGAIIYTGDLKWTV 175 (850)
Q Consensus 151 ~~~V~~~~~~~~gvILfIdELh~lv 175 (850)
.+.+++ .+.++|.|||+|.+.
T Consensus 80 ~~~l~~----~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 80 IDALDR----RRVVLLVIDEADHLF 100 (131)
T ss_dssp HHHHHH----CTEEEEEEETTHHHH
T ss_pred HHHHHh----cCCeEEEEeChHhcC
Confidence 666665 334799999999986
No 291
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.17 E-value=0.0071 Score=70.61 Aligned_cols=124 Identities=14% Similarity=0.141 Sum_probs=69.9
Q ss_pred CcHHHHHHHHHHHhcCCCCC-eEEEcCCCchHHHHHHHHHHhHHhCCC----Cc--------ccCC--cEEEEeeccccc
Q 003070 70 VSKEDIKLVFEVFLRKKRRN-TVIVGDCLSITDALVFDFMGRVERGDV----PQ--------ELKQ--THVIKFHFAPVT 134 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~N-PVLVGe~gvgktAvVegla~rI~~G~V----P~--------~Lkg--~~visLdl~~l~ 134 (850)
|-+.-++.+...+..++-.+ -++.|++|+|||.++..+|+.+....- |. -..+ ..|+.+|-+
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaa--- 98 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAA--- 98 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechh---
Confidence 44555555555555444344 399999999999999999998865321 10 0111 134444321
Q ss_pred ccccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCC
Q 003070 135 LRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSA 214 (850)
Q Consensus 135 ~~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~ 214 (850)
..+| + .-++++++.+......++.-|++|||+|.+-.+ +.+ .|||-. |-
T Consensus 99 ---s~~g-V-d~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~------------------A~N-------ALLKtL-EE 147 (484)
T PRK14956 99 ---SNRG-I-ENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ------------------SFN-------ALLKTL-EE 147 (484)
T ss_pred ---hccc-H-HHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH------------------HHH-------HHHHHh-hc
Confidence 1121 1 124455555543212345789999999998331 222 245422 22
Q ss_pred CCCeEEEEecccH
Q 003070 215 SSTRVWLMATASY 227 (850)
Q Consensus 215 arG~lwlIGatT~ 227 (850)
..+.+.+|.+||.
T Consensus 148 Pp~~viFILaTte 160 (484)
T PRK14956 148 PPAHIVFILATTE 160 (484)
T ss_pred CCCceEEEeecCC
Confidence 3578999998886
No 292
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.15 E-value=0.043 Score=58.61 Aligned_cols=106 Identities=18% Similarity=0.177 Sum_probs=82.2
Q ss_pred HHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhhhCCCEE-Eeecc
Q 003070 497 VEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLV-VLVED 575 (850)
Q Consensus 497 a~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~~P~sV-vllde 575 (850)
.+.-.+--.|.|---.|+.|--|+||+.|.||+-..+-+..-.+|.++=..- -.+..|.+.||..|..+ ||.|+
T Consensus 73 ~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl-----~~Lp~l~~~Lr~~~~kFIlFcDD 147 (287)
T COG2607 73 VRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL-----ATLPDLVELLRARPEKFILFCDD 147 (287)
T ss_pred HHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH-----hhHHHHHHHHhcCCceEEEEecC
Confidence 3344445568888889999999999999999999988888888888874432 12457889999999885 55688
Q ss_pred ccc-cCHHHHHHHHhhhccCcc---CceEEEEecCC
Q 003070 576 IDL-ADPQFIKILADGFETENF---GKVIFVLTKGD 607 (850)
Q Consensus 576 iek-A~~~v~~~l~q~~d~G~l---~n~Iii~Tsn~ 607 (850)
.-. .+..-.+.|+-++|-|.= .|+||..|||.
T Consensus 148 LSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 148 LSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred CCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 763 455778888888887653 49999999994
No 293
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.14 E-value=0.02 Score=65.48 Aligned_cols=97 Identities=16% Similarity=0.206 Sum_probs=62.2
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhc------CCCCceEEecCcc---------ccC--CCCCc----hhhHHHHh-hhCC
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVF------GSTDLLFHIDMRK---------RND--GVSSH----SEMLMGTL-KNYE 567 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lf------gs~~~~i~idms~---------~~~--~~~~~----~~~l~e~v-r~~P 567 (850)
.-++|.||+|||||+++..||..+- |..-.+|.+|.-. |.+ .-|-+ .+.+..++ +.+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~~ 254 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKD 254 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhCC
Confidence 5788999999999999999997653 3344566666421 111 11111 12344433 2367
Q ss_pred CEEEeeccccccCHHHH--HHHHhhhccCccC-ceEEEEecC
Q 003070 568 KLVVLVEDIDLADPQFI--KILADGFETENFG-KVIFVLTKG 606 (850)
Q Consensus 568 ~sVvlldeiekA~~~v~--~~l~q~~d~G~l~-n~Iii~Tsn 606 (850)
|.+||+|..-..+.+.. .-+.+.++.-... .+++||..+
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat 296 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSST 296 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 89999999999886543 3455555543333 688999887
No 294
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.09 E-value=0.0085 Score=65.11 Aligned_cols=82 Identities=15% Similarity=0.291 Sum_probs=51.1
Q ss_pred CcHHHHHHHHHHHhcC-CCC-----CeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHH
Q 003070 70 VSKEDIKLVFEVFLRK-KRR-----NTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEV 143 (850)
Q Consensus 70 gRdeeirrVieIL~Rr-~K~-----NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~Rgef 143 (850)
-..+.++.-++|.-+- ++| ..+|.|+||.|||-++.=+ ..++...|+ +.+ |=.
T Consensus 29 iGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~II-----A~Emgvn~k---~ts-------------Gp~ 87 (332)
T COG2255 29 IGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHII-----ANELGVNLK---ITS-------------GPA 87 (332)
T ss_pred cChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHH-----HHHhcCCeE---ecc-------------ccc
Confidence 4578888888888643 222 3689999999999887433 333332232 111 111
Q ss_pred HHHHHHHHHHHhccccCCCCeEEEecchhhhh
Q 003070 144 EMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175 (850)
Q Consensus 144 E~RlkeL~~~V~~~~~~~~gvILfIdELh~lv 175 (850)
=+|-.+|...+... ..|=||||||||-+-
T Consensus 88 leK~gDlaaiLt~L---e~~DVLFIDEIHrl~ 116 (332)
T COG2255 88 LEKPGDLAAILTNL---EEGDVLFIDEIHRLS 116 (332)
T ss_pred ccChhhHHHHHhcC---CcCCeEEEehhhhcC
Confidence 12334455555442 678999999999873
No 295
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.09 E-value=0.032 Score=72.29 Aligned_cols=95 Identities=17% Similarity=0.179 Sum_probs=54.5
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc-------cccC----------------------C---CCCc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR-------KRND----------------------G---VSSH 555 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms-------~~~~----------------------~---~~~~ 555 (850)
....+-++||.|+|||+||++++..+...-+.-+.+|.. .+.. . ....
T Consensus 206 ~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~ 285 (1153)
T PLN03210 206 EVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH 285 (1153)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC
Confidence 345778999999999999999987774433332333311 0000 0 0012
Q ss_pred hhhHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 556 SEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 556 ~~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.+.+.+.++.+++ +|+||||+.. .+++.|....+-..-..+| |+||.
T Consensus 286 ~~~~~~~L~~krv-LLVLDdv~~~--~~l~~L~~~~~~~~~GsrI-IiTTr 332 (1153)
T PLN03210 286 LGAMEERLKHRKV-LIFIDDLDDQ--DVLDALAGQTQWFGSGSRI-IVITK 332 (1153)
T ss_pred HHHHHHHHhCCeE-EEEEeCCCCH--HHHHHHHhhCccCCCCcEE-EEEeC
Confidence 2445566666665 8889999754 5666666544321112345 44554
No 296
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=96.08 E-value=0.036 Score=63.26 Aligned_cols=120 Identities=13% Similarity=0.072 Sum_probs=77.9
Q ss_pred HHhccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc------c------
Q 003070 481 VLQENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK------R------ 548 (850)
Q Consensus 481 ~L~~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~------~------ 548 (850)
.+...+.||+..= .++..+--.-..+-.|+.|+-|+|||++|++||.+|= +.-+.+++-. .
T Consensus 14 ~pf~aivGqd~lk----~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp---~~~~V~gc~f~cdP~~P~~~c~~ 86 (423)
T COG1239 14 LPFTAIVGQDPLK----LALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLP---EIEVVIGCPFNCDPDDPEEMCDE 86 (423)
T ss_pred cchhhhcCchHHH----HHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCC---ccceecCCCCCCCCCChhhhhHH
Confidence 4566678887532 3333342223467888999999999999999999992 2222223310 0
Q ss_pred -----cC---------------CCCCc-----hh--hHHHHhhhCC------------CEEEeeccccccCHHHHHHHHh
Q 003070 549 -----ND---------------GVSSH-----SE--MLMGTLKNYE------------KLVVLVEDIDLADPQFIKILAD 589 (850)
Q Consensus 549 -----~~---------------~~~~~-----~~--~l~e~vr~~P------------~sVvlldeiekA~~~v~~~l~q 589 (850)
++ -|-|. +| -+..+++..| .-|+.+|||---|..+++.||+
T Consensus 87 c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd 166 (423)
T COG1239 87 CRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLD 166 (423)
T ss_pred HHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHH
Confidence 00 01111 11 1333333322 2399999999999999999999
Q ss_pred hhccCc---------cC---ceEEEEecCC
Q 003070 590 GFETEN---------FG---KVIFVLTKGD 607 (850)
Q Consensus 590 ~~d~G~---------l~---n~Iii~Tsn~ 607 (850)
+++.|+ ++ +.|+|-|.|.
T Consensus 167 ~aaeG~n~vereGisi~hpa~fvligTmNP 196 (423)
T COG1239 167 VAAEGVNDVEREGISIRHPARFLLIGTMNP 196 (423)
T ss_pred HHHhCCceeeeCceeeccCccEEEEeecCc
Confidence 999995 22 9999999993
No 297
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.024 Score=63.47 Aligned_cols=155 Identities=11% Similarity=0.060 Sum_probs=101.3
Q ss_pred CcHHHHHHHHHHHhcC-------------CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeeccccccc
Q 003070 70 VSKEDIKLVFEVFLRK-------------KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLR 136 (850)
Q Consensus 70 gRdeeirrVieIL~Rr-------------~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~ 136 (850)
|-|+.|+.|=|+..=. --+-.+|-|.||.|||-+++.+|..- ++.||.+-=+.+ -
T Consensus 155 GL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T----------~AtFIrvvgSEl--V 222 (406)
T COG1222 155 GLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT----------DATFIRVVGSEL--V 222 (406)
T ss_pred CHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CceEEEeccHHH--H
Confidence 6787777776665322 23467999999999999999998763 566776532222 2
Q ss_pred ccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCC
Q 003070 137 FMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASS 216 (850)
Q Consensus 137 ~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~ar 216 (850)
-.+=||=..=+.+|-...++ ..+.|+|||||-.|-+.....+. +| ---+....+|+=|=|-.+- .+
T Consensus 223 qKYiGEGaRlVRelF~lAre----kaPsIIFiDEIDAIg~kR~d~~t----~g----DrEVQRTmleLL~qlDGFD--~~ 288 (406)
T COG1222 223 QKYIGEGARLVRELFELARE----KAPSIIFIDEIDAIGAKRFDSGT----SG----DREVQRTMLELLNQLDGFD--PR 288 (406)
T ss_pred HHHhccchHHHHHHHHHHhh----cCCeEEEEechhhhhcccccCCC----Cc----hHHHHHHHHHHHHhccCCC--CC
Confidence 22345555556667777776 67899999999998665432111 11 1246667778777777664 68
Q ss_pred CeEEEEecccHHHHHhhhhcCCcccccccc-eeeecCCCC
Q 003070 217 TRVWLMATASYQTYMKCQMRQPPLEIQWAL-QAVSIPSGG 255 (850)
Q Consensus 217 G~lwlIGatT~eeY~K~iekdPaLEr~W~L-Q~V~Vps~~ 255 (850)
|.+.+|.||.- .=..||||=|==+| ..|-+|-|.
T Consensus 289 ~nvKVI~ATNR-----~D~LDPALLRPGR~DRkIEfplPd 323 (406)
T COG1222 289 GNVKVIMATNR-----PDILDPALLRPGRFDRKIEFPLPD 323 (406)
T ss_pred CCeEEEEecCC-----ccccChhhcCCCcccceeecCCCC
Confidence 99999999852 22468999873333 344555444
No 298
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.01 E-value=0.025 Score=60.62 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=59.0
Q ss_pred CcHHHHHHHHHHH---hc-CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHH
Q 003070 70 VSKEDIKLVFEVF---LR-KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEM 145 (850)
Q Consensus 70 gRdeeirrVieIL---~R-r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~ 145 (850)
|-|++-+.+++.- .+ +.-||.+|-|+.|.||+++|+++..+... +|.++|.++-..+.
T Consensus 31 Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~-------~GLRlIev~k~~L~----------- 92 (249)
T PF05673_consen 31 GIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD-------QGLRLIEVSKEDLG----------- 92 (249)
T ss_pred CHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh-------cCceEEEECHHHhc-----------
Confidence 6566555555443 33 46788999999999999999999988765 34788887644331
Q ss_pred HHHHHHHHHhccccCCCCeEEEecchh
Q 003070 146 NLTELKRKVDSLTSVGGGAIIYTGDLK 172 (850)
Q Consensus 146 RlkeL~~~V~~~~~~~~gvILfIdELh 172 (850)
-|.+|.+.++.. .-..|||+|||-
T Consensus 93 ~l~~l~~~l~~~---~~kFIlf~DDLs 116 (249)
T PF05673_consen 93 DLPELLDLLRDR---PYKFILFCDDLS 116 (249)
T ss_pred cHHHHHHHHhcC---CCCEEEEecCCC
Confidence 356677777752 558999999975
No 299
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.00 E-value=0.0015 Score=62.92 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=26.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecc
Q 003070 89 NTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFA 131 (850)
Q Consensus 89 NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~ 131 (850)
|.+|+|+||+|||.+++.+|+.+ +..++.+.+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~----------~~~~~~i~~~ 33 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL----------GRPVIRINCS 33 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH----------TCEEEEEE-T
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----------hcceEEEEec
Confidence 47899999999999999999998 4556555544
No 300
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=95.97 E-value=0.017 Score=62.75 Aligned_cols=125 Identities=17% Similarity=0.182 Sum_probs=89.7
Q ss_pred CChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhc---CCCCceEEe
Q 003070 467 LSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVF---GSTDLLFHI 543 (850)
Q Consensus 467 ~~~~~~~~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lf---gs~~~~i~i 543 (850)
|.....+.+.-|...+..+-+.=...|++|-..-.++|+ =+|+.||||.||+.||+.+-|+-- .=...|+.+
T Consensus 171 fa~ere~tl~~lksgiatrnp~fnrmieqierva~rsr~-----p~ll~gptgagksflarriyelk~arhq~sg~fvev 245 (531)
T COG4650 171 FAEEREQTLDFLKSGIATRNPHFNRMIEQIERVAIRSRA-----PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEV 245 (531)
T ss_pred HHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHhhccC-----CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEE
Confidence 333334567777778887777778888888877776666 578999999999999998755421 114568888
Q ss_pred cCcccc--C---C--------CCCchhhHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCcc
Q 003070 544 DMRKRN--D---G--------VSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 544 dms~~~--~---~--------~~~~~~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l 596 (850)
++...- . . -.|.-..=...+|.----.+|||||-.--.+-|..|+.+||+-+|
T Consensus 246 ncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfldeigelgadeqamllkaieekrf 311 (531)
T COG4650 246 NCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRF 311 (531)
T ss_pred eeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhcc
Confidence 876531 1 0 011112233446777778999999999888999999999999997
No 301
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.023 Score=69.60 Aligned_cols=111 Identities=11% Similarity=0.239 Sum_probs=84.3
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCC-------CCceEEecCccccCCCCCchh
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGS-------TDLLFHIDMRKRNDGVSSHSE 557 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs-------~~~~i~idms~~~~~~~~~~~ 557 (850)
-|+|=++-|+.+.+.+.+.+...| ++.|..|||||.++.-||.-+-.. ...++.+||+.- -++..|-|
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNNP----vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L-vAGakyRG 245 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNNP----VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL-VAGAKYRG 245 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCCC----eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHH-hccccccC
Confidence 578888888888888766555555 379999999999999999665443 345688898863 12344554
Q ss_pred -------hHHHHhhhCCCEEEeeccccc------c---CHHHHHHHHhhhccCccCceEE
Q 003070 558 -------MLMGTLKNYEKLVVLVEDIDL------A---DPQFIKILADGFETENFGKVIF 601 (850)
Q Consensus 558 -------~l~e~vr~~P~sVvlldeiek------A---~~~v~~~l~q~~d~G~l~n~Ii 601 (850)
.+-+.|++.+.-++|+|||.. + --+.-|+|+.++-.|.++ ||-
T Consensus 246 eFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~-~IG 304 (786)
T COG0542 246 EFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELR-CIG 304 (786)
T ss_pred cHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeE-EEE
Confidence 467778889888999999975 2 278999999999999994 443
No 302
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.97 E-value=0.018 Score=59.81 Aligned_cols=96 Identities=20% Similarity=0.251 Sum_probs=59.6
Q ss_pred EEEEecCCchHHHHHHHHHHHHh--cCCCCceEEecCccc---c------C--CCC--------CchhhHH---HHhhhC
Q 003070 511 WFLLQGNDTIGKRRLALSIAESV--FGSTDLLFHIDMRKR---N------D--GVS--------SHSEMLM---GTLKNY 566 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~l--fgs~~~~i~idms~~---~------~--~~~--------~~~~~l~---e~vr~~ 566 (850)
.++|.||+|||||+.+-.||..+ .|..-.||.+|--.- + + .-| .-.+.+. +..+.+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 47899999999999999988544 245556777775421 0 0 000 0112233 334567
Q ss_pred CCEEEeeccccccC--HHHHHHHHhhhccCccCceEEEEecC
Q 003070 567 EKLVVLVEDIDLAD--PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 567 P~sVvlldeiekA~--~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.|.+||+|=.-..+ +....-|.+.++.-.--++++||.++
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~ 124 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSAT 124 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGG
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecc
Confidence 89999999987665 34445555555444445889999888
No 303
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.047 Score=61.64 Aligned_cols=80 Identities=14% Similarity=0.072 Sum_probs=60.7
Q ss_pred cCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCC
Q 003070 84 RKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGG 163 (850)
Q Consensus 84 Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~g 163 (850)
||-=+-.++||+||.|||-+++.+|.- -|..|+.+.-+- +....|||-|.=+.-|.+..+-+ .+
T Consensus 242 rrPWkgvLm~GPPGTGKTlLAKAvATE----------c~tTFFNVSsst--ltSKwRGeSEKlvRlLFemARfy----AP 305 (491)
T KOG0738|consen 242 RRPWKGVLMVGPPGTGKTLLAKAVATE----------CGTTFFNVSSST--LTSKWRGESEKLVRLLFEMARFY----AP 305 (491)
T ss_pred ccccceeeeeCCCCCcHHHHHHHHHHh----------hcCeEEEechhh--hhhhhccchHHHHHHHHHHHHHh----CC
Confidence 666778999999999999999888753 246777765442 33445999886666666777653 57
Q ss_pred eEEEecchhhhhcCCc
Q 003070 164 AIIYTGDLKWTVDQQE 179 (850)
Q Consensus 164 vILfIdELh~lvgag~ 179 (850)
-++|||||..|.+...
T Consensus 306 StIFiDEIDslcs~RG 321 (491)
T KOG0738|consen 306 STIFIDEIDSLCSQRG 321 (491)
T ss_pred ceeehhhHHHHHhcCC
Confidence 8999999999998764
No 304
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.018 Score=61.47 Aligned_cols=96 Identities=14% Similarity=0.160 Sum_probs=67.7
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccc----cCCCCCchhhHHHHhhhCCCEEEeeccccc-----
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR----NDGVSSHSEMLMGTLKNYEKLVVLVEDIDL----- 578 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~----~~~~~~~~~~l~e~vr~~P~sVvlldeiek----- 578 (850)
|-|. |+.||.|+|||-||++.|-.- .-.|||+.-|+. -..+.-.+-.|.=..|.+--|+||+||||-
T Consensus 181 PKGv-lLygppgtGktLlaraVahht---~c~firvsgselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r 256 (404)
T KOG0728|consen 181 PKGV-LLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSR 256 (404)
T ss_pred Ccce-EEecCCCCchhHHHHHHHhhc---ceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeeccccccccc
Confidence 4454 578999999999999999553 568999998873 111111233344445888889999999996
Q ss_pred ------cCHHHHHHHHhhhcc--Cc--cCceEEEEecCC
Q 003070 579 ------ADPQFIKILADGFET--EN--FGKVIFVLTKGD 607 (850)
Q Consensus 579 ------A~~~v~~~l~q~~d~--G~--l~n~Iii~Tsn~ 607 (850)
.|.+||.-.+..+.. |- -+|.=+||.+|-
T Consensus 257 ~e~~~ggdsevqrtmlellnqldgfeatknikvimatnr 295 (404)
T KOG0728|consen 257 VESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNR 295 (404)
T ss_pred ccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccc
Confidence 388888877765542 21 148888998884
No 305
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.87 E-value=0.037 Score=62.86 Aligned_cols=101 Identities=13% Similarity=0.151 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhc-CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcE-EEEe-e-------------ccccccc
Q 003070 73 EDIKLVFEVFLR-KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTH-VIKF-H-------------FAPVTLR 136 (850)
Q Consensus 73 eeirrVieIL~R-r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~-visL-d-------------l~~l~~~ 136 (850)
+-..|+|+.|.- .+.-..+|+|++|+|||.++..+++.|..+. | +++ ++.+ + .+.+.+.
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~-~----dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANH-P----EVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcC-C----CceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 455679999985 3566789999999999999999999998761 2 233 2211 1 1111111
Q ss_pred ccChhHH-HHHHH-HHHHHHhccccCCCCeEEEecchhhhhcCC
Q 003070 137 FMKKEEV-EMNLT-ELKRKVDSLTSVGGGAIIYTGDLKWTVDQQ 178 (850)
Q Consensus 137 ~~~Rgef-E~Rlk-eL~~~V~~~~~~~~gvILfIdELh~lvgag 178 (850)
..+..-. -.++. .+....+.+...|..|+|++|||+.+..|.
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A~A~ 236 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLARAY 236 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHHHHH
Confidence 1111110 01221 122222222234779999999999998875
No 306
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.86 E-value=0.084 Score=57.66 Aligned_cols=59 Identities=15% Similarity=0.078 Sum_probs=39.0
Q ss_pred chHHHHHHHHHHHHhhh---------CCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 489 QFDSIHSIVEVLVECKS---------AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 489 Q~eai~~Ia~av~~~r~---------gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
+.+....+.+.+...+. .++...++|+||+|+|||+++..||..+-.......-+|+..
T Consensus 43 ~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 43 AELLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred HHHHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 34455556666655432 123468889999999999999999987754444454455543
No 307
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.86 E-value=0.039 Score=57.36 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHH
Q 003070 73 EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKR 152 (850)
Q Consensus 73 eeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~ 152 (850)
.-++++-+.+.-+..++.+|.|++|+|||.++..++...... +..++.++...+. .+..++..
T Consensus 24 ~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~-------~~~~~~i~~~~~~----------~~~~~~~~ 86 (226)
T TIGR03420 24 ELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER-------GKSAIYLPLAELA----------QADPEVLE 86 (226)
T ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCcEEEEeHHHHH----------HhHHHHHh
Confidence 344444444333456677788999999999999999876532 3456666655331 12233333
Q ss_pred HHhccccCCCCeEEEecchhhhhc
Q 003070 153 KVDSLTSVGGGAIIYTGDLKWTVD 176 (850)
Q Consensus 153 ~V~~~~~~~~gvILfIdELh~lvg 176 (850)
.++. .-+|+|||++++-.
T Consensus 87 ~~~~------~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 87 GLEQ------ADLVCLDDVEAIAG 104 (226)
T ss_pred hccc------CCEEEEeChhhhcC
Confidence 3332 24899999999843
No 308
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.85 E-value=0.033 Score=59.30 Aligned_cols=113 Identities=9% Similarity=0.039 Sum_probs=68.8
Q ss_pred CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCe
Q 003070 85 KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGA 164 (850)
Q Consensus 85 r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gv 164 (850)
...++-+|.|++|+|||-++..++....+. |.+++-+.+.. +.....++++.+++ --
T Consensus 43 ~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-------~~~v~y~~~~~----------~~~~~~~~~~~~~~------~d 99 (235)
T PRK08084 43 EHSGYIYLWSREGAGRSHLLHAACAELSQR-------GRAVGYVPLDK----------RAWFVPEVLEGMEQ------LS 99 (235)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEEHHH----------HhhhhHHHHHHhhh------CC
Confidence 345677999999999999999988876642 45555554432 11122334444443 24
Q ss_pred EEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCccccc
Q 003070 165 IIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQ 243 (850)
Q Consensus 165 ILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr~ 243 (850)
+|+|||+|.+.+.... + .++-.++.... .+|+.++|+|++ .-+...-...|.|-.|
T Consensus 100 lliiDdi~~~~~~~~~-----------------~---~~lf~l~n~~~--e~g~~~li~ts~-~~p~~l~~~~~~L~SR 155 (235)
T PRK08084 100 LVCIDNIECIAGDELW-----------------E---MAIFDLYNRIL--ESGRTRLLITGD-RPPRQLNLGLPDLASR 155 (235)
T ss_pred EEEEeChhhhcCCHHH-----------------H---HHHHHHHHHHH--HcCCCeEEEeCC-CChHHcCcccHHHHHH
Confidence 7999999998654311 0 12334555443 357788999876 4444433445777765
No 309
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=95.80 E-value=0.043 Score=63.17 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=66.3
Q ss_pred CchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHH-hcCCCCceEEecCccccCCCCCchhhHHHHhhh-
Q 003070 488 WQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAES-VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKN- 565 (850)
Q Consensus 488 gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~-lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~- 565 (850)
...+.+..+++.+-.... .--++++||+|+|||.||.+|+-. ..-+. .++ +...++.+.-.+
T Consensus 191 ~~r~k~~~L~rl~~fve~---~~Nli~lGp~GTGKThla~~l~~~~a~~sG-~f~------------T~a~Lf~~L~~~~ 254 (449)
T TIGR02688 191 EARQKLLLLARLLPLVEP---NYNLIELGPKGTGKSYIYNNLSPYVILISG-GTI------------TVAKLFYNISTRQ 254 (449)
T ss_pred ChHHHHHHHHhhHHHHhc---CCcEEEECCCCCCHHHHHHHHhHHHHHHcC-CcC------------cHHHHHHHHHHHH
Confidence 345556666666555443 357889999999999999999866 22111 111 111221111111
Q ss_pred ----CCCEEEeeccccc----cCHHHHHHHHhhhccCccC--------ceEEEEecC
Q 003070 566 ----YEKLVVLVEDIDL----ADPQFIKILADGFETENFG--------KVIFVLTKG 606 (850)
Q Consensus 566 ----~P~sVvlldeiek----A~~~v~~~l~q~~d~G~l~--------n~Iii~Tsn 606 (850)
--+.+|.||||-. .+.+...+|+.-|++|.|+ |+=+||.-|
T Consensus 255 lg~v~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGN 311 (449)
T TIGR02688 255 IGLVGRWDVVAFDEVATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGN 311 (449)
T ss_pred HhhhccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcc
Confidence 1247999999987 5667899999999999995 555555555
No 310
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.78 E-value=0.043 Score=58.65 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=26.5
Q ss_pred hcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCC
Q 003070 83 LRKKRRNTVIVGDCLSITDALVFDFMGRVERGD 115 (850)
Q Consensus 83 ~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~ 115 (850)
.++...+.+|+|++|+|||-+++.++..+..+.
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~ 71 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIRNLLKRLDQER 71 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC
Confidence 354556789999999999999999988876543
No 311
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.77 E-value=0.034 Score=58.29 Aligned_cols=78 Identities=9% Similarity=0.003 Sum_probs=52.7
Q ss_pred CcHHHHHHHHHHHhc--CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHH
Q 003070 70 VSKEDIKLVFEVFLR--KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNL 147 (850)
Q Consensus 70 gRdeeirrVieIL~R--r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rl 147 (850)
|+++++...+.-+.+ ...++.+|.|++|+|||.++..++...... +..++.++...+. . .+
T Consensus 23 ~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-------~~~~~~i~~~~~~------~----~~ 85 (227)
T PRK08903 23 GENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-------GRNARYLDAASPL------L----AF 85 (227)
T ss_pred CCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEEehHHhH------H----HH
Confidence 556677777777765 456678899999999999999998876542 3456666544221 1 11
Q ss_pred HHHHHHHhccccCCCCeEEEecchhhh
Q 003070 148 TELKRKVDSLTSVGGGAIIYTGDLKWT 174 (850)
Q Consensus 148 keL~~~V~~~~~~~~gvILfIdELh~l 174 (850)
... ..+-+|+|||+|++
T Consensus 86 ----~~~------~~~~~liiDdi~~l 102 (227)
T PRK08903 86 ----DFD------PEAELYAVDDVERL 102 (227)
T ss_pred ----hhc------ccCCEEEEeChhhc
Confidence 111 23557999999987
No 312
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.76 E-value=0.12 Score=58.93 Aligned_cols=98 Identities=21% Similarity=0.270 Sum_probs=55.8
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHh---cCC-CCceEEecCcccc---------C--CCCCc----hhhHHHHhh-hCCC
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESV---FGS-TDLLFHIDMRKRN---------D--GVSSH----SEMLMGTLK-NYEK 568 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~l---fgs-~~~~i~idms~~~---------~--~~~~~----~~~l~e~vr-~~P~ 568 (850)
.+.++|+||+|+|||+++..||..+ +|. .-.+|..|.-... + .-+-+ -+.+..++. -+-+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 5799999999999999999999754 443 3345555542100 0 00000 012333333 2346
Q ss_pred EEEeeccccccC--HHHHHHHHhhhccCccCceEEEEecC
Q 003070 569 LVVLVEDIDLAD--PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 569 sVvlldeiekA~--~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.+||+|..-..+ ..+...|......+.--..++||..+
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAt 256 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNAT 256 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCc
Confidence 899999998664 33333333322222222668888766
No 313
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=95.76 E-value=0.044 Score=61.70 Aligned_cols=83 Identities=17% Similarity=0.283 Sum_probs=61.9
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEe-cCccccC------------------CCCCchhhHHHHhhhCCCEE
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHI-DMRKRND------------------GVSSHSEMLMGTLKNYEKLV 570 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~i-dms~~~~------------------~~~~~~~~l~e~vr~~P~sV 570 (850)
+.+++.|++|+|||++.++|..++.... ..+.| |..|..- ..-+|.+.+..++|.+|- +
T Consensus 179 ~~ili~G~tGsGKTTll~al~~~i~~~~-riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD-~ 256 (340)
T TIGR03819 179 LAFLISGGTGSGKTTLLSALLALVAPDE-RIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPD-R 256 (340)
T ss_pred CeEEEECCCCCCHHHHHHHHHccCCCCC-cEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCC-e
Confidence 6899999999999999999998886544 44444 4433210 112455689999999998 6
Q ss_pred EeeccccccCHHHHHHHHhhhccCccC
Q 003070 571 VLVEDIDLADPQFIKILADGFETENFG 597 (850)
Q Consensus 571 vlldeiekA~~~v~~~l~q~~d~G~l~ 597 (850)
|++-||- +++.+. +++++.+|...
T Consensus 257 IivGEiR--g~Ea~~-~l~a~~tGh~G 280 (340)
T TIGR03819 257 IVVGEVR--GAEVVD-LLAALNTGHDG 280 (340)
T ss_pred EEEeCcC--cHHHHH-HHHHHHcCCCc
Confidence 8889998 456765 48999999863
No 314
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.75 E-value=0.025 Score=61.18 Aligned_cols=37 Identities=5% Similarity=-0.032 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhH
Q 003070 73 EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRV 111 (850)
Q Consensus 73 eeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI 111 (850)
+=+++++..+. ..++.+|.|+||+|||.+++.|+.+.
T Consensus 9 ~l~~~~l~~l~--~g~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 9 RVTSRALRYLK--SGYPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHHh--cCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 33455555555 46788999999999999999999754
No 315
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.71 E-value=0.016 Score=67.67 Aligned_cols=45 Identities=9% Similarity=0.037 Sum_probs=40.7
Q ss_pred CCcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCC
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGD 115 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~ 115 (850)
-||++.|+.++-++. .+.|.+|.|+||+|||-+++.|+..+....
T Consensus 23 ~gre~vI~lll~aal--ag~hVLL~GpPGTGKT~LAraLa~~~~~~~ 67 (498)
T PRK13531 23 YERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAFQNAR 67 (498)
T ss_pred cCcHHHHHHHHHHHc--cCCCEEEECCCChhHHHHHHHHHHHhcccC
Confidence 389999999999998 489999999999999999999999887653
No 316
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.68 E-value=0.03 Score=62.07 Aligned_cols=83 Identities=12% Similarity=0.227 Sum_probs=58.8
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEec-Ccccc--C----------C-----CCCchhhHHHHhhhCCCEE
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID-MRKRN--D----------G-----VSSHSEMLMGTLKNYEKLV 570 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id-ms~~~--~----------~-----~~~~~~~l~e~vr~~P~sV 570 (850)
...++|.||+|+|||+++++|+..+- .....+.|+ ..|+. . . .-++.+.+..++|.+|- +
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~-~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd-~ 221 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIP-KDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD-R 221 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCC-ccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC-e
Confidence 35788999999999999999998763 344555553 22321 0 0 11234578888999998 7
Q ss_pred EeeccccccCHHHHHHHHhhhccCcc
Q 003070 571 VLVEDIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 571 vlldeiekA~~~v~~~l~q~~d~G~l 596 (850)
|++||+-- .+++. +++++.+|..
T Consensus 222 ii~gE~r~--~e~~~-~l~a~~~g~~ 244 (308)
T TIGR02788 222 IILGELRG--DEAFD-FIRAVNTGHP 244 (308)
T ss_pred EEEeccCC--HHHHH-HHHHHhcCCC
Confidence 89999985 56665 5888888854
No 317
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.67 E-value=0.055 Score=61.85 Aligned_cols=100 Identities=14% Similarity=0.187 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhc-CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecc---------------ccccc
Q 003070 73 EDIKLVFEVFLR-KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFA---------------PVTLR 136 (850)
Q Consensus 73 eeirrVieIL~R-r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~---------------~l~~~ 136 (850)
+=--|+|+.|+= .++-.-+|||++|+|||-+++.++..|... -| +++++-+-++ .+.++
T Consensus 154 ~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hF----Dv~~~VvLIgER~~EVtdiqrsIlg~vv~s 228 (416)
T PRK09376 154 DLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HP----EVHLIVLLIDERPEEVTDMQRSVKGEVVAS 228 (416)
T ss_pred ccceeeeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cC----CeEEEEEEeCCchhHHHHHHHHhcCcEEEE
Confidence 344578888874 356678999999999999999999988875 12 2222211111 12222
Q ss_pred ccChhHHHHHHH---HHHHHHhccccCCCCeEEEecchhhhhcCC
Q 003070 137 FMKKEEVEMNLT---ELKRKVDSLTSVGGGAIIYTGDLKWTVDQQ 178 (850)
Q Consensus 137 ~~~RgefE~Rlk---eL~~~V~~~~~~~~gvILfIdELh~lvgag 178 (850)
.++ +.-+.|+. .++...+.....|..|||||||||-+.-+.
T Consensus 229 t~d-~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~arAq 272 (416)
T PRK09376 229 TFD-EPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAY 272 (416)
T ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChHHHHHHH
Confidence 222 22233333 223333322224779999999999998765
No 318
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.61 E-value=0.12 Score=59.31 Aligned_cols=118 Identities=13% Similarity=0.136 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHHHhhhC-----CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcccc-----------C--
Q 003070 489 QFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRN-----------D-- 550 (850)
Q Consensus 489 Q~eai~~Ia~av~~~r~g-----k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~-----------~-- 550 (850)
+.+++..+.+.+...-.. ..-.-++|.||+|+|||+++..||..+.+....+.-+++..|- +
T Consensus 216 ~~~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~l 295 (436)
T PRK11889 216 EEEVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTI 295 (436)
T ss_pred HHHHHHHHHHHHHHHhccccccccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhc
Confidence 345555555555332111 1125688999999999999999998888665555555554331 0
Q ss_pred CCCCc----hhhHHHHhh---h-CCCEEEeeccccccC--HHHHHHHHhhhccCccCceEEEEecC
Q 003070 551 GVSSH----SEMLMGTLK---N-YEKLVVLVEDIDLAD--PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 551 ~~~~~----~~~l~e~vr---~-~P~sVvlldeiekA~--~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
..|-+ -+.|.++++ + +.|.+||+|-.-..+ .....-|.+.++...-..+++||.++
T Consensus 296 gipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsAT 361 (436)
T PRK11889 296 GFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAS 361 (436)
T ss_pred CCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCc
Confidence 11111 123445553 2 358999999887766 44556667777655444677787655
No 319
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=95.60 E-value=0.067 Score=59.91 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=83.0
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccc-c-----------CCC
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR-N-----------DGV 552 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~-~-----------~~~ 552 (850)
.++++.+.+..+...-+ |-..-++=+|+.|-||+||--+||+---.---+...|+.+++.-- + .++
T Consensus 205 ~~v~~S~~mk~~v~qA~--k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~ 282 (511)
T COG3283 205 QIVAVSPKMKHVVEQAQ--KLAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGD 282 (511)
T ss_pred HHhhccHHHHHHHHHHH--HhhccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCC
Confidence 34566655544433211 123457889999999999999999865544456778999987642 1 122
Q ss_pred CCchhhHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccC----------ceEEEEecC
Q 003070 553 SSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTKG 606 (850)
Q Consensus 553 ~~~~~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~----------n~Iii~Tsn 606 (850)
.|+.|.+.-| | .--||||||-.-.|..|..|++-+.+|.|+ |+=||.||.
T Consensus 283 ~gk~GffE~A---n-gGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq 342 (511)
T COG3283 283 EGKKGFFEQA---N-GGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQ 342 (511)
T ss_pred CCccchhhhc---c-CCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEeccc
Confidence 4556655443 2 246899999999999999999999999997 888888876
No 320
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.57 E-value=0.081 Score=57.99 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=27.3
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhc---C-CCCceEEec
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVF---G-STDLLFHID 544 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lf---g-s~~~~i~id 544 (850)
...++|+||+|+|||+++..||..+- | ..-.+|.+|
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D 233 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD 233 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 35788999999999999999997763 3 333455555
No 321
>PRK14974 cell division protein FtsY; Provisional
Probab=95.55 E-value=0.14 Score=57.56 Aligned_cols=98 Identities=15% Similarity=0.074 Sum_probs=59.4
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcccc-----------C--CCC---C-c----hhhHHHH---hh
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRN-----------D--GVS---S-H----SEMLMGT---LK 564 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~-----------~--~~~---~-~----~~~l~e~---vr 564 (850)
..-++|.||+|+|||+++..||..+-.....++-++...|- . +-+ . | ...+.++ .+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~ 219 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK 219 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999998765433333334333220 0 001 0 1 1123333 34
Q ss_pred hCCCEEEeeccccccC--HHHHHHHHhhhccCccCceEEEEecC
Q 003070 565 NYEKLVVLVEDIDLAD--PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 565 ~~P~sVvlldeiekA~--~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.+-|.|||+|..-..| ...+.-|..+.+.-.--.+|+|+.+.
T Consensus 220 ~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~ 263 (336)
T PRK14974 220 ARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDAL 263 (336)
T ss_pred hCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccc
Confidence 4568899999998774 56666666665543334667777665
No 322
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.53 E-value=0.041 Score=56.52 Aligned_cols=97 Identities=23% Similarity=0.258 Sum_probs=58.1
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc-cc--------------C---------CC------------
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK-RN--------------D---------GV------------ 552 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~-~~--------------~---------~~------------ 552 (850)
...+++.||-|+|||.|.+.+.+.+=......+.++..+ .. . -+
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 457778899999999999999998832222223332211 00 0 00
Q ss_pred ---CCchhhHHHHhhhCC-CEEEeeccccccC------HHHHHHHHhhhccCcc-CceEEEEec
Q 003070 553 ---SSHSEMLMGTLKNYE-KLVVLVEDIDLAD------PQFIKILADGFETENF-GKVIFVLTK 605 (850)
Q Consensus 553 ---~~~~~~l~e~vr~~P-~sVvlldeiekA~------~~v~~~l~q~~d~G~l-~n~Iii~Ts 605 (850)
......+.+.+.++. .-||+|||++.+. +.+...|.+.++...- .|..+|++.
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~ 163 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITG 163 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEE
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEEC
Confidence 011224555555543 3899999999988 7888888888887322 244444443
No 323
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.52 E-value=0.011 Score=55.43 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=25.1
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
+++.||+|+|||++|+.||+.+ .+..++|..
T Consensus 2 I~I~G~~gsGKST~a~~La~~~-----~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL-----GFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH-----TCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH-----CCeEEEecc
Confidence 5789999999999999999987 344555554
No 324
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.47 E-value=0.051 Score=57.73 Aligned_cols=113 Identities=14% Similarity=0.245 Sum_probs=76.3
Q ss_pred CCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCC--CCceEEecCccccCCCCCchh------
Q 003070 486 VPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGS--TDLLFHIDMRKRNDGVSSHSE------ 557 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs--~~~~i~idms~~~~~~~~~~~------ 557 (850)
++|-+++|+.+.-. .+.| ..--++|.||+|+|||+-+..||..|.|. .+.++.++-|. +.+ +|
T Consensus 29 IVGNe~tv~rl~vi---a~~g-nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd--eRG---IDvVRn~I 99 (333)
T KOG0991|consen 29 IVGNEDTVERLSVI---AKEG-NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD--ERG---IDVVRNKI 99 (333)
T ss_pred hhCCHHHHHHHHHH---HHcC-CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcc--ccc---cHHHHHHH
Confidence 46666666554432 2333 23468899999999999999999999994 56677666553 221 23
Q ss_pred -hHHHH---hhhCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCCC
Q 003070 558 -MLMGT---LKNYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGDS 608 (850)
Q Consensus 558 -~l~e~---vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~~ 608 (850)
.++.. +-.-.|-+|+|||.|---.-.|..|.+.||-= =.-|=|.|.||.+
T Consensus 100 K~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiy-S~ttRFalaCN~s 153 (333)
T KOG0991|consen 100 KMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIY-SNTTRFALACNQS 153 (333)
T ss_pred HHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHH-cccchhhhhhcch
Confidence 22222 22245789999999988888888888877631 1245678888844
No 325
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.47 E-value=0.019 Score=58.66 Aligned_cols=60 Identities=20% Similarity=0.321 Sum_probs=46.7
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
+++||...|.. +-+..+.+.+...+.|.|.+|+|||+||.+|++.||-...+...+|-..
T Consensus 2 ni~w~~~~v~~---~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDn 61 (197)
T COG0529 2 NIVWHPHSVTK---QEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDN 61 (197)
T ss_pred CccccccccCH---HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChh
Confidence 57888875443 3334445555566778999999999999999999999999988888654
No 326
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.45 E-value=0.17 Score=58.96 Aligned_cols=39 Identities=15% Similarity=0.028 Sum_probs=28.2
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
-..++|+|++|+|||++|..||..+--......-++...
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 367889999999999999999987753323444444443
No 327
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.39 E-value=0.074 Score=59.76 Aligned_cols=83 Identities=12% Similarity=0.216 Sum_probs=61.2
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEe-cCccccC------------------CCCCchhhHHHHhhhCCCEE
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHI-DMRKRND------------------GVSSHSEMLMGTLKNYEKLV 570 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~i-dms~~~~------------------~~~~~~~~l~e~vr~~P~sV 570 (850)
..+++.|+||+|||++.++|...+= ..+.++.+ |..|+.- ..-++.+.|..++|.+|- +
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip-~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD-~ 238 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIP-AIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD-R 238 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCC-CCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC-e
Confidence 5689999999999999999998874 44566666 3333210 012345688999999998 7
Q ss_pred EeeccccccCHHHHHHHHhhhccCccC
Q 003070 571 VLVEDIDLADPQFIKILADGFETENFG 597 (850)
Q Consensus 571 vlldeiekA~~~v~~~l~q~~d~G~l~ 597 (850)
|++.||-- .+.+. +++++.+|...
T Consensus 239 IivGEiR~--~ea~~-~l~a~~tGh~G 262 (332)
T PRK13900 239 IIVGELRG--AEAFS-FLRAINTGHPG 262 (332)
T ss_pred EEEEecCC--HHHHH-HHHHHHcCCCc
Confidence 78999984 45664 69999999864
No 328
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.37 E-value=0.14 Score=59.26 Aligned_cols=98 Identities=10% Similarity=0.043 Sum_probs=58.9
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcccc-----------C--CCCCc--------hhhHH---HHhh
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRN-----------D--GVSSH--------SEMLM---GTLK 564 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~-----------~--~~~~~--------~~~l~---e~vr 564 (850)
-..++|+||+|+|||++|..||..+-.......-+++..|- + .-|-| +.... +.++
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 47889999999999999999998764333333334443321 1 01111 11122 2335
Q ss_pred hCCCEEEeeccccccC--HHHHHHHHhhhccCccCceEEEEecC
Q 003070 565 NYEKLVVLVEDIDLAD--PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 565 ~~P~sVvlldeiekA~--~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
++.|.|||+|=-=.-| .....-|.++.+.-.--.+++|+.+.
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~ 223 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGS 223 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccc
Confidence 5689999999775443 34555565555443334688888766
No 329
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.37 E-value=0.052 Score=54.33 Aligned_cols=97 Identities=11% Similarity=0.122 Sum_probs=63.5
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc---cc-----CCCCCch-----h-----hHHHHhhhCCCE
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK---RN-----DGVSSHS-----E-----MLMGTLKNYEKL 569 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~---~~-----~~~~~~~-----~-----~l~e~vr~~P~s 569 (850)
+.-.+.+.||.|+|||+|.+.|+-.+.-..-. |.+|-.. .. ...-+|+ | .|+.++-.+|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~- 102 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGE-ILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR- 102 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC-
Confidence 44577799999999999999999877543332 4454221 11 0112332 1 58899999995
Q ss_pred EEeecccccc-CHHHHHHHHhhhccCccCceEEEEecC
Q 003070 570 VVLVEDIDLA-DPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 570 VvlldeiekA-~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
|+||||---+ |+.....+.+.|.+=.=.+..||++|.
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 140 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 9999998754 777777777777643212445555555
No 330
>COG3899 Predicted ATPase [General function prediction only]
Probab=95.37 E-value=0.046 Score=68.55 Aligned_cols=45 Identities=13% Similarity=0.184 Sum_probs=39.7
Q ss_pred CcHHHHHHHHHHHhcCCCC---CeEEEcCCCchHHHHHHHHHHhHHhC
Q 003070 70 VSKEDIKLVFEVFLRKKRR---NTVIVGDCLSITDALVFDFMGRVERG 114 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~---NPVLVGe~gvgktAvVegla~rI~~G 114 (850)
||+.|+.++++++.|-.+. =.+++|++|.||||||+++.++|.+.
T Consensus 4 GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~ 51 (849)
T COG3899 4 GRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ 51 (849)
T ss_pred chHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc
Confidence 8999999999999986433 25678999999999999999999987
No 331
>PRK10867 signal recognition particle protein; Provisional
Probab=95.32 E-value=0.13 Score=59.76 Aligned_cols=98 Identities=18% Similarity=0.185 Sum_probs=55.5
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCC---CCceEEecCcccc---------C--CCC--------CchhhHH---HHh
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGS---TDLLFHIDMRKRN---------D--GVS--------SHSEMLM---GTL 563 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs---~~~~i~idms~~~---------~--~~~--------~~~~~l~---e~v 563 (850)
-..++|+||+|+|||++|..||..+-.. .-.+|..|.-... + .-| ...+... +..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a 179 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEA 179 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999877433 3345555542100 0 000 1112222 233
Q ss_pred hhCCCEEEeeccccccC--HHHHHHHHhhhccCccCceEEEEecC
Q 003070 564 KNYEKLVVLVEDIDLAD--PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 564 r~~P~sVvlldeiekA~--~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+.+.|.||++|=-=..| .....-|.++.+--.-..+++|+.+.
T Consensus 180 ~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~ 224 (433)
T PRK10867 180 KENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAM 224 (433)
T ss_pred HhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecc
Confidence 55678888888776543 44444444433322223556666554
No 332
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.32 E-value=0.068 Score=60.58 Aligned_cols=43 Identities=5% Similarity=-0.051 Sum_probs=34.5
Q ss_pred CcHHHHHHHHHHHhcCCCCCe-EEEcCCCchHHHHHHHHHHhHH
Q 003070 70 VSKEDIKLVFEVFLRKKRRNT-VIVGDCLSITDALVFDFMGRVE 112 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~NP-VLVGe~gvgktAvVegla~rI~ 112 (850)
|-+.-++.+...+..++-.++ +|.|++|+|||.++..+|+.+.
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 566667777777766555666 7889999999999999999885
No 333
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.28 E-value=0.036 Score=47.65 Aligned_cols=61 Identities=15% Similarity=0.240 Sum_probs=37.8
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhhhCCCEEEeec
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVE 574 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~~P~sVvlld 574 (850)
+.+.|+.|+|||++|++|++.+ ....+..+|-----++...+...+...++..+...|++|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~~~I~eg~~~~~~~~~~~~~~~~d~~Iyld 62 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDEIVILEGLYASYKSRDARIRDLADLKIYLD 62 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeEEEEecchhhhhhhHHhhccccccEEEEEE
Confidence 4578999999999999999998 223444443211111212222233356777788777776
No 334
>PHA00729 NTP-binding motif containing protein
Probab=95.27 E-value=0.043 Score=58.30 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.8
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
..+++.|++|+|||.||.+||+.+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999874
No 335
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.26 E-value=0.032 Score=67.05 Aligned_cols=81 Identities=17% Similarity=0.253 Sum_probs=57.2
Q ss_pred CCCC-eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCC-CCchhhHHHHhh--------hCCCEEEeecc
Q 003070 506 AKKA-TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGV-SSHSEMLMGTLK--------NYEKLVVLVED 575 (850)
Q Consensus 506 gk~~-~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~-~~~~~~l~e~vr--------~~P~sVvllde 575 (850)
++|. --+|++||.|.|||+||..+|+.- .-+++-|+-| |+.. +..-..|..+|. .+|-+ +++||
T Consensus 322 ~RP~kKilLL~GppGlGKTTLAHViAkqa---GYsVvEINAS--DeRt~~~v~~kI~~avq~~s~l~adsrP~C-LViDE 395 (877)
T KOG1969|consen 322 KRPPKKILLLCGPPGLGKTTLAHVIAKQA---GYSVVEINAS--DERTAPMVKEKIENAVQNHSVLDADSRPVC-LVIDE 395 (877)
T ss_pred CCCccceEEeecCCCCChhHHHHHHHHhc---CceEEEeccc--ccccHHHHHHHHHHHHhhccccccCCCcce-EEEec
Confidence 3554 678899999999999999999875 3455555544 3432 223346666654 56664 46899
Q ss_pred ccccCHHHHHHHHhhhc
Q 003070 576 IDLADPQFIKILADGFE 592 (850)
Q Consensus 576 iekA~~~v~~~l~q~~d 592 (850)
||=|.+-..+.|+..+.
T Consensus 396 IDGa~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 396 IDGAPRAAVDVILSLVK 412 (877)
T ss_pred ccCCcHHHHHHHHHHHH
Confidence 99999877777777666
No 336
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.20 E-value=0.044 Score=57.13 Aligned_cols=88 Identities=20% Similarity=0.330 Sum_probs=59.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhhhCCCEEEeeccccccCHHHHHH
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKI 586 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~~P~sVvlldeiekA~~~v~~~ 586 (850)
+.+.-++|.|+.|+|||+..+.|+...|.+. +. +.... .....|++. -+|.|||++.....-.+.
T Consensus 50 k~d~~lvl~G~QG~GKStf~~~L~~~~~~d~--~~--~~~~k-----d~~~~l~~~------~iveldEl~~~~k~~~~~ 114 (198)
T PF05272_consen 50 KNDTVLVLVGKQGIGKSTFFRKLGPEYFSDS--IN--DFDDK-----DFLEQLQGK------WIVELDELDGLSKKDVEA 114 (198)
T ss_pred cCceeeeEecCCcccHHHHHHHHhHHhccCc--cc--cCCCc-----HHHHHHHHh------HheeHHHHhhcchhhHHH
Confidence 6689999999999999999999987777544 11 11110 112233333 589999999766555566
Q ss_pred HHhhhccCcc--------------CceEEEEecCCCc
Q 003070 587 LADGFETENF--------------GKVIFVLTKGDSS 609 (850)
Q Consensus 587 l~q~~d~G~l--------------~n~Iii~Tsn~~~ 609 (850)
|+..|-.-.. ++++||.|||...
T Consensus 115 lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~ 151 (198)
T PF05272_consen 115 LKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDD 151 (198)
T ss_pred HHHHhcccceeeecCCcCcceeeceeEEEEeccCCcc
Confidence 6655544331 4999999999643
No 337
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.17 E-value=0.036 Score=63.94 Aligned_cols=77 Identities=21% Similarity=0.216 Sum_probs=47.8
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHH----HhccccCCC
Q 003070 87 RRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRK----VDSLTSVGG 162 (850)
Q Consensus 87 K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~----V~~~~~~~~ 162 (850)
+.|.+|+|+||+|||.+++.||.++ .+| ++.++...+.-.+..-.+.+.-|..+.+. ++. ..
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l---~~p-------f~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~----a~ 181 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARIL---NVP-------FAIADATTLTEAGYVGEDVENILLKLLQAADYDVEK----AQ 181 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhc---CCC-------eEEechhhccccccccccHHHHHHHHHHhCcccHHh----cc
Confidence 4689999999999999999999765 133 44445443321121123355555555432 222 22
Q ss_pred CeEEEecchhhhhcC
Q 003070 163 GAIIYTGDLKWTVDQ 177 (850)
Q Consensus 163 gvILfIdELh~lvga 177 (850)
+-||||||++-+-..
T Consensus 182 ~gIV~lDEIdkl~~~ 196 (413)
T TIGR00382 182 KGIIYIDEIDKISRK 196 (413)
T ss_pred cceEEecccchhchh
Confidence 348999999988653
No 338
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.16 E-value=0.042 Score=58.34 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=90.4
Q ss_pred HHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccCh----hHHHHHH-----
Q 003070 77 LVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKK----EEVEMNL----- 147 (850)
Q Consensus 77 rVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~R----gefE~Rl----- 147 (850)
-++..|--...-|.+|+|.|++|||-+.+++|+-+..|-= .+..++|.-+|-.+= ++|+.+ =++..|+
T Consensus 127 ~li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~--~~l~kkv~IiDersE-Iag~~~gvpq~~~g~R~dVld~ 203 (308)
T COG3854 127 PLIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGIN--QFLPKKVGIIDERSE-IAGCLNGVPQHGRGRRMDVLDP 203 (308)
T ss_pred HHHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhcccc--ccCCceEEEEeccch-hhccccCCchhhhhhhhhhccc
Confidence 3777888788999999999999999999999999998842 566788888884421 333332 2444444
Q ss_pred ----HHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEe
Q 003070 148 ----TELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMA 223 (850)
Q Consensus 148 ----keL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIG 223 (850)
.-++-.|++. .+=|+.+|||-+--++- .++. ++ .+| +.||+
T Consensus 204 cpk~~gmmmaIrsm----~PEViIvDEIGt~~d~~---------------------------A~~t-a~--~~G-Vkli~ 248 (308)
T COG3854 204 CPKAEGMMMAIRSM----SPEVIIVDEIGTEEDAL---------------------------AILT-AL--HAG-VKLIT 248 (308)
T ss_pred chHHHHHHHHHHhc----CCcEEEEeccccHHHHH---------------------------HHHH-HH--hcC-cEEEE
Confidence 3456677763 35567789986643321 2333 22 345 99999
Q ss_pred cc---cHHHHHhhhhcCCcccccccceeeec
Q 003070 224 TA---SYQTYMKCQMRQPPLEIQWALQAVSI 251 (850)
Q Consensus 224 at---T~eeY~K~iekdPaLEr~W~LQ~V~V 251 (850)
|+ ..+.. .|.|+|-.-|..|++.-
T Consensus 249 TaHG~~iedl----~krp~lkdlv~i~af~r 275 (308)
T COG3854 249 TAHGNGIEDL----IKRPTLKDLVEIQAFDR 275 (308)
T ss_pred eeccccHHHh----hcChhHHHHHhhhHHHH
Confidence 86 34444 45799998887666543
No 339
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=95.16 E-value=0.033 Score=59.43 Aligned_cols=77 Identities=10% Similarity=0.193 Sum_probs=56.2
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchh-hHHHHhhhCCCEEEeeccccccCHHHHHHH
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSE-MLMGTLKNYEKLVVLVEDIDLADPQFIKIL 587 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~-~l~e~vr~~P~sVvlldeiekA~~~v~~~l 587 (850)
.++. ..||.|+|||++.|+||..+ ...++-+++++..+. ..+. .|.+++.. -+-+.|||+++-+.+++..+
T Consensus 33 ~~~~-~~GpagtGKtetik~La~~l---G~~~~vfnc~~~~~~--~~l~ril~G~~~~--GaW~cfdefnrl~~~vLS~i 104 (231)
T PF12774_consen 33 LGGA-LSGPAGTGKTETIKDLARAL---GRFVVVFNCSEQMDY--QSLSRILKGLAQS--GAWLCFDEFNRLSEEVLSVI 104 (231)
T ss_dssp TEEE-EESSTTSSHHHHHHHHHHCT---T--EEEEETTSSS-H--HHHHHHHHHHHHH--T-EEEEETCCCSSHHHHHHH
T ss_pred CCCC-CcCCCCCCchhHHHHHHHHh---CCeEEEecccccccH--HHHHHHHHHHhhc--CchhhhhhhhhhhHHHHHHH
Confidence 3454 69999999999999999988 578888999886321 1233 45555554 57899999999999999988
Q ss_pred Hhhhcc
Q 003070 588 ADGFET 593 (850)
Q Consensus 588 ~q~~d~ 593 (850)
.|-+..
T Consensus 105 ~~~i~~ 110 (231)
T PF12774_consen 105 SQQIQS 110 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 775443
No 340
>PRK05642 DNA replication initiation factor; Validated
Probab=95.16 E-value=0.15 Score=54.28 Aligned_cols=125 Identities=14% Similarity=0.094 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhcCCC---CCe-EEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHH
Q 003070 72 KEDIKLVFEVFLRKKR---RNT-VIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNL 147 (850)
Q Consensus 72 deeirrVieIL~Rr~K---~NP-VLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rl 147 (850)
...+...++-+..... .|| +|.|++|+|||-++..++..+.+ ++.+++-++...+ -...
T Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~-------~~~~v~y~~~~~~----------~~~~ 88 (234)
T PRK05642 26 NAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQ-------RGEPAVYLPLAEL----------LDRG 88 (234)
T ss_pred hHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHh-------CCCcEEEeeHHHH----------Hhhh
Confidence 4455555544433211 245 57799999999999888877653 2456666654432 1122
Q ss_pred HHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccH
Q 003070 148 TELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASY 227 (850)
Q Consensus 148 keL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~ 227 (850)
..+++.+++ .=+|.|||++.+.+.... -.++-.|+.... .+|+..+|++++.
T Consensus 89 ~~~~~~~~~------~d~LiiDDi~~~~~~~~~--------------------~~~Lf~l~n~~~--~~g~~ilits~~~ 140 (234)
T PRK05642 89 PELLDNLEQ------YELVCLDDLDVIAGKADW--------------------EEALFHLFNRLR--DSGRRLLLAASKS 140 (234)
T ss_pred HHHHHhhhh------CCEEEEechhhhcCChHH--------------------HHHHHHHHHHHH--hcCCEEEEeCCCC
Confidence 344444544 137899999988654311 023444554322 3577888988764
Q ss_pred HHHHhhhhcCCccccc
Q 003070 228 QTYMKCQMRQPPLEIQ 243 (850)
Q Consensus 228 eeY~K~iekdPaLEr~ 243 (850)
-.+.. ...|.|-.|
T Consensus 141 p~~l~--~~~~~L~SR 154 (234)
T PRK05642 141 PRELP--IKLPDLKSR 154 (234)
T ss_pred HHHcC--ccCccHHHH
Confidence 44433 345777775
No 341
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.11 E-value=0.034 Score=71.32 Aligned_cols=91 Identities=18% Similarity=0.319 Sum_probs=72.5
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC---CCCCc-----------hhhHHHHhhhCCCEEEeeccc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND---GVSSH-----------SEMLMGTLKNYEKLVVLVEDI 576 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~---~~~~~-----------~~~l~e~vr~~P~sVvlldei 576 (850)
=+|++|||.+|||.|.+-||+.. ...||||+=-|.-+ --.+| -|.|.||+|+-- -|+|||.
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~t---ghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~Gy--WIVLDEL 964 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARET---GHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGY--WIVLDEL 964 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHh---CccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCc--EEEeecc
Confidence 47899999999999999999988 47899997554211 01112 258999998864 5789999
Q ss_pred cccCHHHHHHHHhhhccCc--c-----------CceEEEEecC
Q 003070 577 DLADPQFIKILADGFETEN--F-----------GKVIFVLTKG 606 (850)
Q Consensus 577 ekA~~~v~~~l~q~~d~G~--l-----------~n~Iii~Tsn 606 (850)
--|..+|...|-+.+|+.| | .|-.++.|-|
T Consensus 965 NLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQN 1007 (4600)
T COG5271 965 NLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQN 1007 (4600)
T ss_pred ccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecC
Confidence 9999999999999999999 1 2777777887
No 342
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.07 E-value=0.068 Score=53.73 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=25.1
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEecC
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDM 545 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idm 545 (850)
+++.||+|+|||.+|..++.......+..+.+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 6899999999999999987655444444544443
No 343
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.06 E-value=0.09 Score=64.42 Aligned_cols=44 Identities=7% Similarity=-0.011 Sum_probs=35.8
Q ss_pred CcHHHHHHHHHHHhcCCCCCe-EEEcCCCchHHHHHHHHHHhHHh
Q 003070 70 VSKEDIKLVFEVFLRKKRRNT-VIVGDCLSITDALVFDFMGRVER 113 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~NP-VLVGe~gvgktAvVegla~rI~~ 113 (850)
|.+.-++.+...+..++-.+. +|.|.+|+|||.++..|++.+.-
T Consensus 20 GQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 20 GQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 677777777777776666666 77899999999999999998863
No 344
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.18 Score=57.44 Aligned_cols=146 Identities=15% Similarity=0.149 Sum_probs=90.8
Q ss_pred CCcHHHHHHHHHHHhcC----CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCC-cEEEEeecc------------
Q 003070 69 SVSKEDIKLVFEVFLRK----KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQ-THVIKFHFA------------ 131 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr----~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg-~~visLdl~------------ 131 (850)
.+||+|++++..+|.-. +..|-++.|.||+|||++++-++++++.-. ...+ ..|=+....
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~---~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS---ANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh---ccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 47999999999998743 566899999999999999999999988751 1111 111122111
Q ss_pred --cccccccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcc
Q 003070 132 --PVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVS 209 (850)
Q Consensus 132 --~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLk 209 (850)
.+-.-|.+..++=+++.+.... .++-+|+.+||+-.|+.... +. |=.|+.
T Consensus 97 ~~~~p~~g~~~~~~~~~l~~~~~~------~~~~~IvvLDEid~L~~~~~---------------~~-------LY~L~r 148 (366)
T COG1474 97 LGKVPLTGDSSLEILKRLYDNLSK------KGKTVIVILDEVDALVDKDG---------------EV-------LYSLLR 148 (366)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHh------cCCeEEEEEcchhhhccccc---------------hH-------HHHHHh
Confidence 0111233445555554444433 26789999999999998641 12 123444
Q ss_pred cccCCCCCeEEEEecccHHHHHhhhhcCCccccccccee
Q 003070 210 DCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQA 248 (850)
Q Consensus 210 p~l~~arG~lwlIGatT~eeY~K~iekdPaLEr~W~LQ~ 248 (850)
-..+ ...++-+||.+.--.|+.++ +|-+-.++....
T Consensus 149 ~~~~-~~~~v~vi~i~n~~~~~~~l--d~rv~s~l~~~~ 184 (366)
T COG1474 149 APGE-NKVKVSIIAVSNDDKFLDYL--DPRVKSSLGPSE 184 (366)
T ss_pred hccc-cceeEEEEEEeccHHHHHHh--hhhhhhccCcce
Confidence 2211 13467888887766676543 466666543333
No 345
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.01 E-value=0.065 Score=66.69 Aligned_cols=127 Identities=12% Similarity=0.100 Sum_probs=72.9
Q ss_pred CcHHHHHHHHHHHhcCCCCCe-EEEcCCCchHHHHHHHHHHhHHhCCC----Ccc--------cCCcE--EEEeeccccc
Q 003070 70 VSKEDIKLVFEVFLRKKRRNT-VIVGDCLSITDALVFDFMGRVERGDV----PQE--------LKQTH--VIKFHFAPVT 134 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~NP-VLVGe~gvgktAvVegla~rI~~G~V----P~~--------Lkg~~--visLdl~~l~ 134 (850)
|-+.-++.+...+.+++=.+. +|.|++|+|||.+++-||+.+..... |.. ..+.+ ++.++=+ +
T Consensus 20 GQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAa--s 97 (944)
T PRK14949 20 GQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAA--S 97 (944)
T ss_pred CcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccc--c
Confidence 556666666666666555565 78999999999999999999865321 211 11222 2222211 0
Q ss_pred ccccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCC
Q 003070 135 LRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSA 214 (850)
Q Consensus 135 ~~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~ 214 (850)
..+..++ ++|++.+...-..++.-|++|||+|.|-. ++.+ .|||. +|-
T Consensus 98 --~~kVDdI----ReLie~v~~~P~~gk~KViIIDEAh~LT~------------------eAqN-------ALLKt-LEE 145 (944)
T PRK14949 98 --RTKVDDT----RELLDNVQYRPSRGRFKVYLIDEVHMLSR------------------SSFN-------ALLKT-LEE 145 (944)
T ss_pred --ccCHHHH----HHHHHHHHhhhhcCCcEEEEEechHhcCH------------------HHHH-------HHHHH-Hhc
Confidence 0112333 34444443211125678999999999932 1222 24552 222
Q ss_pred CCCeEEEEecccHHHH
Q 003070 215 SSTRVWLMATASYQTY 230 (850)
Q Consensus 215 arG~lwlIGatT~eeY 230 (850)
..+.+++|++||.-.+
T Consensus 146 PP~~vrFILaTTe~~k 161 (944)
T PRK14949 146 PPEHVKFLLATTDPQK 161 (944)
T ss_pred cCCCeEEEEECCCchh
Confidence 3467999999876554
No 346
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=95.00 E-value=0.098 Score=57.74 Aligned_cols=121 Identities=15% Similarity=0.145 Sum_probs=76.6
Q ss_pred HHHHhccCCCchHHHHHHHHHHHHhhhC--CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCc--eEEecCccccCCCCC
Q 003070 479 YKVLQENVPWQFDSIHSIVEVLVECKSA--KKATWFLLQGNDTIGKRRLALSIAESVFGSTDL--LFHIDMRKRNDGVSS 554 (850)
Q Consensus 479 ~~~L~~~V~gQ~eai~~Ia~av~~~r~g--k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~--~i~idms~~~~~~~~ 554 (850)
.+.|.+-..+..+.+.-+-+.+-.|-.| +....|+|.|+.|.||+.+...|. .+||+... ...+.+...++ ++.
T Consensus 44 ~~~L~~~~~~d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~-~l~G~~~~~~~~~~~~~~~~~-~~f 121 (304)
T TIGR01613 44 NGFLLETFGGDNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLS-NLLGDYATTAVASLKMNEFQE-HRF 121 (304)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHH-HHhChhhccCCcchhhhhccC-CCc
Confidence 3345565566666677777776666665 345789999999999999998775 66787541 22333333221 122
Q ss_pred chhhHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccC-------------ceEEEEecCC
Q 003070 555 HSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG-------------KVIFVLTKGD 607 (850)
Q Consensus 555 ~~~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~-------------n~Iii~Tsn~ 607 (850)
....|.+ ..+++.+|+++....-...|+++.-...+. ++.+|+.||.
T Consensus 122 ~~a~l~g------k~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~ 181 (304)
T TIGR01613 122 GLARLEG------KRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNH 181 (304)
T ss_pred hhhhhcC------CEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCC
Confidence 2222322 479999999876555556677766444331 7778888884
No 347
>PRK06696 uridine kinase; Validated
Probab=94.97 E-value=0.047 Score=57.49 Aligned_cols=58 Identities=14% Similarity=0.162 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccc
Q 003070 490 FDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR 548 (850)
Q Consensus 490 ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~ 548 (850)
.+.+.+||+.|...+.+++ .-+.+.|++|+|||++|+.||+.+=......+++.|..|
T Consensus 4 ~~~~~~la~~~~~~~~~~~-~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 4 KQLIKELAEHILTLNLTRP-LRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred HHHHHHHHHHHHHhCCCCc-eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 4678899999987666655 466689999999999999999998433345667666655
No 348
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.96 E-value=0.1 Score=52.66 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=26.5
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
+++.||+|+|||++|+.||+.+ .+++++|+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~-----~~~~is~~d 32 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF-----GFTHLSAGD 32 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CCeEEECCh
Confidence 5789999999999999999977 367787764
No 349
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.92 E-value=0.1 Score=51.28 Aligned_cols=94 Identities=15% Similarity=0.158 Sum_probs=60.0
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc---c-cCCCCCchh--hHHHHhhhCCCEEEeeccccc-cC
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK---R-NDGVSSHSE--MLMGTLKNYEKLVVLVEDIDL-AD 580 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~---~-~~~~~~~~~--~l~e~vr~~P~sVvlldeiek-A~ 580 (850)
+.-.+.+.||+|+|||+|.+.|+-.+--..-. |.+|-.. | ..-..|-.. .|+.++-.+|- |++|||-.. -|
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~-illlDEP~~~LD 102 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPDEGI-VTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPN-LLLLDEPTNHLD 102 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCceE-EEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCC-EEEEeCCccCCC
Confidence 33566799999999999999999876432222 4444211 0 000011111 58999999995 999999874 47
Q ss_pred HHHHHHHHhhhccCccCceEEEEecC
Q 003070 581 PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 581 ~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+..+..|.+.+.+ +..+| |++|.
T Consensus 103 ~~~~~~l~~~l~~--~~~ti-l~~th 125 (144)
T cd03221 103 LESIEALEEALKE--YPGTV-ILVSH 125 (144)
T ss_pred HHHHHHHHHHHHH--cCCEE-EEEEC
Confidence 7777777777764 33354 45554
No 350
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.92 E-value=0.066 Score=60.41 Aligned_cols=84 Identities=15% Similarity=0.180 Sum_probs=59.6
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEe-cCccccC-----------------CCCCchhhHHHHhhhCCCEE
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHI-DMRKRND-----------------GVSSHSEMLMGTLKNYEKLV 570 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~i-dms~~~~-----------------~~~~~~~~l~e~vr~~P~sV 570 (850)
...+++.||||+|||+++++|+..+= ..+.++.| |..|..- ..-++-+.+..++|.+|- +
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~-~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD-~ 239 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP-PQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD-R 239 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC-CCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCC-e
Confidence 45789999999999999999998864 44556665 3333210 011233578889999998 7
Q ss_pred EeeccccccCHHHHHHHHhhhccCccC
Q 003070 571 VLVEDIDLADPQFIKILADGFETENFG 597 (850)
Q Consensus 571 vlldeiekA~~~v~~~l~q~~d~G~l~ 597 (850)
|++-||-- .+.+. +++++.+|...
T Consensus 240 IivGEiR~--~ea~~-~l~a~~tGh~G 263 (344)
T PRK13851 240 ILLGEMRD--DAAWA-YLSEVVSGHPG 263 (344)
T ss_pred EEEEeeCc--HHHHH-HHHHHHhCCCc
Confidence 88899974 45665 67899999753
No 351
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.031 Score=66.98 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=52.7
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCC-ceEEecCccccCCC-----CCchhhHHHHhhhCCCEEEeeccccc
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTD-LLFHIDMRKRNDGV-----SSHSEMLMGTLKNYEKLVVLVEDIDL 578 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~-~~i~idms~~~~~~-----~~~~~~l~e~vr~~P~sVvlldeiek 578 (850)
-+-+|+.||.|+|||.||++|+..++..-. .+..+|++.-+... ...-..+++++.--| |||+|||+|-
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~P-SiIvLDdld~ 505 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAP-SIIVLDDLDC 505 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCC-cEEEEcchhh
Confidence 478899999999999999999999995433 44667888764321 111236889988888 5999999984
No 352
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.89 E-value=0.014 Score=59.37 Aligned_cols=81 Identities=10% Similarity=0.172 Sum_probs=52.6
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHH-hCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCe
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVE-RGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGA 164 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~-~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gv 164 (850)
-+-|-+|+|++|||||.+++.|++.+- .++ ..++.+|++.++ ..++.+.-+..+......+.....+-
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~-------~~~~~~d~s~~~----~~~~~~~~~~~l~~~~~~~v~~~~~g 70 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSE-------RPLIRIDMSEYS----EGDDVESSVSKLLGSPPGYVGAEEGG 70 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSC-------CEEEEEEGGGHC----SHHHCSCHCHHHHHHTTCHHHHHHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCc-------cchHHHhhhccc----ccchHHhhhhhhhhcccceeeccchh
Confidence 466889999999999999999999887 443 468899988553 13444444444433211110001122
Q ss_pred EEEecchhhhhcC
Q 003070 165 IIYTGDLKWTVDQ 177 (850)
Q Consensus 165 ILfIdELh~lvga 177 (850)
|+|+||+.-+...
T Consensus 71 VVllDEidKa~~~ 83 (171)
T PF07724_consen 71 VVLLDEIDKAHPS 83 (171)
T ss_dssp EEEEETGGGCSHT
T ss_pred hhhhHHHhhcccc
Confidence 9999999988764
No 353
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.81 E-value=0.12 Score=58.70 Aligned_cols=95 Identities=18% Similarity=0.082 Sum_probs=59.6
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC----------CCCCchhhHHHHhhhCCCEEEeeccccc
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND----------GVSSHSEMLMGTLKNYEKLVVLVEDIDL 578 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~----------~~~~~~~~l~e~vr~~P~sVvlldeiek 578 (850)
.--+.+.||.|+|||.|.-..-+.+=...+.=++| -++|- +...-+..++..+.++- .|+.|||++=
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HF--h~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~-~lLcfDEF~V 138 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHF--HEFMLDVHSRLHQLRGQDDPLPQVADELAKES-RLLCFDEFQV 138 (362)
T ss_pred CceEEEECCCCCchhHHHHHHHHhCCccccccccc--cHHHHHHHHHHHHHhCCCccHHHHHHHHHhcC-CEEEEeeeec
Confidence 34566899999999998887777765433322332 22211 12223567777877764 4999999986
Q ss_pred cCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 579 ADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 579 A~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
-|+-=-.+|...|+.=-=+.+++|+|||
T Consensus 139 ~DiaDAmil~rLf~~l~~~gvvlVaTSN 166 (362)
T PF03969_consen 139 TDIADAMILKRLFEALFKRGVVLVATSN 166 (362)
T ss_pred cchhHHHHHHHHHHHHHHCCCEEEecCC
Confidence 5554444444433321114789999999
No 354
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.67 E-value=0.083 Score=54.04 Aligned_cols=98 Identities=14% Similarity=0.039 Sum_probs=56.9
Q ss_pred CCeEEEEecCCchHHHHHHHHHH----HHhcCCCC------ceEE---------ecCccc--cCCCCCchh------hHH
Q 003070 508 KATWFLLQGNDTIGKRRLALSIA----ESVFGSTD------LLFH---------IDMRKR--NDGVSSHSE------MLM 560 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA----~~lfgs~~------~~i~---------idms~~--~~~~~~~~~------~l~ 560 (850)
+.-.+.+.||.|+|||+|.+.|+ +..++... .+.. +++... +..+..+.+ .|+
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~la 99 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLA 99 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHH
Confidence 44678899999999999999985 11111110 1111 222211 111111111 588
Q ss_pred HHhhhC--CCEEEeecccccc-CHHHHHHHHhhhccCccCceEEEEecC
Q 003070 561 GTLKNY--EKLVVLVEDIDLA-DPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 561 e~vr~~--P~sVvlldeiekA-~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.++-.+ | .|+||||--.+ |+.....|++.+.+=.=.+..|||+|.
T Consensus 100 ral~~~~~p-~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH 147 (176)
T cd03238 100 SELFSEPPG-TLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147 (176)
T ss_pred HHHhhCCCC-CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 888888 7 59999998754 777777777776642112344555554
No 355
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=94.66 E-value=0.044 Score=54.17 Aligned_cols=46 Identities=26% Similarity=0.359 Sum_probs=38.3
Q ss_pred CCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcC
Q 003070 487 PWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFG 535 (850)
Q Consensus 487 ~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfg 535 (850)
++|.+|+..|.+.+... +...-++|.+|||+|||.++..++..++.
T Consensus 6 ~~Q~~ai~~i~~~~~~~---~~~~~~ll~~~tGsGKT~~~~~~~~~l~~ 51 (184)
T PF04851_consen 6 PYQQEAIARIINSLENK---KEERRVLLNAPTGSGKTIIALALILELAR 51 (184)
T ss_dssp HHHHHHHHHHHHHHHTT---SGCSEEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhc---CCCCCEEEEECCCCCcChhhhhhhhcccc
Confidence 47999999999888765 23467889999999999999998877775
No 356
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.60 E-value=0.14 Score=52.49 Aligned_cols=97 Identities=11% Similarity=-0.012 Sum_probs=61.9
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc--ccCCCCCchh------hHHHHhhhCCCEEEeeccccc-
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK--RNDGVSSHSE------MLMGTLKNYEKLVVLVEDIDL- 578 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~--~~~~~~~~~~------~l~e~vr~~P~sVvlldeiek- 578 (850)
+...+.+.||+|+|||+|.+.|+-++--+.-. |.+|-.. |......+.+ .|+.++-.+| .|+||||---
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p-~lllLDEPts~ 101 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDN-DEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNA-TFYLFDEPSAY 101 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcE-EEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCC-CEEEEECCccc
Confidence 45688899999999999999999877543333 4444211 1000011222 5888999999 5999999874
Q ss_pred cCHHHHHHHHhhhccCccCc-eEEEEecC
Q 003070 579 ADPQFIKILADGFETENFGK-VIFVLTKG 606 (850)
Q Consensus 579 A~~~v~~~l~q~~d~G~l~n-~Iii~Tsn 606 (850)
-|+..+..+.+.+.+=.-+. ..||++|.
T Consensus 102 LD~~~~~~l~~~l~~~~~~~~~tiiivsH 130 (177)
T cd03222 102 LDIEQRLNAARAIRRLSEEGKKTALVVEH 130 (177)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 47777777777665422222 34455554
No 357
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.57 E-value=0.12 Score=62.81 Aligned_cols=99 Identities=10% Similarity=0.062 Sum_probs=58.7
Q ss_pred CcHHHHHHHHHHHhcCCCCCe-EEEcCCCchHHHHHHHHHHhHHhCCC----Cc-------cc-CCc--EEEEeeccccc
Q 003070 70 VSKEDIKLVFEVFLRKKRRNT-VIVGDCLSITDALVFDFMGRVERGDV----PQ-------EL-KQT--HVIKFHFAPVT 134 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~NP-VLVGe~gvgktAvVegla~rI~~G~V----P~-------~L-kg~--~visLdl~~l~ 134 (850)
|-+.-++.+...+..++-.+. ++.|++|+|||.++..||+.+.-..- |. .+ .|. .++.+|
T Consensus 20 GQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieid----- 94 (647)
T PRK07994 20 GQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEID----- 94 (647)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeec-----
Confidence 666667777777776555565 78899999999999999998865321 21 00 111 223332
Q ss_pred ccccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhc
Q 003070 135 LRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVD 176 (850)
Q Consensus 135 ~~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvg 176 (850)
+.++.-++. +++|++.+...-..++.-|++|||+|.|-.
T Consensus 95 --aas~~~Vdd-iR~li~~~~~~p~~g~~KV~IIDEah~Ls~ 133 (647)
T PRK07994 95 --AASRTKVED-TRELLDNVQYAPARGRFKVYLIDEVHMLSR 133 (647)
T ss_pred --ccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEechHhCCH
Confidence 121111221 344544443211235678999999999843
No 358
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.57 E-value=0.093 Score=60.36 Aligned_cols=90 Identities=14% Similarity=0.256 Sum_probs=60.6
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHh--hhCCCEEEeeccccccCHHHHHHHH
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTL--KNYEKLVVLVEDIDLADPQFIKILA 588 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~v--r~~P~sVvlldeiekA~~~v~~~l~ 588 (850)
-.++.||-+||||++.+.|.+.+-.. .|.++.-+.........+.+..-+ .......+|||||.... ..+..|.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~-~W~~~lk 114 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVP-DWERALK 114 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCch-hHHHHHH
Confidence 67899999999999998888877443 555554332100001122222222 22244789999998775 7999999
Q ss_pred hhhccCccCceEEEEecC
Q 003070 589 DGFETENFGKVIFVLTKG 606 (850)
Q Consensus 589 q~~d~G~l~n~Iii~Tsn 606 (850)
-..|.|.+ -|+|.+||
T Consensus 115 ~l~d~~~~--~v~itgss 130 (398)
T COG1373 115 YLYDRGNL--DVLITGSS 130 (398)
T ss_pred HHHccccc--eEEEECCc
Confidence 99999998 67777777
No 359
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.54 E-value=0.18 Score=55.59 Aligned_cols=45 Identities=11% Similarity=-0.071 Sum_probs=36.9
Q ss_pred CCcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHh
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVER 113 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~ 113 (850)
.|+++-++++...+.+++-.+-+|.|++|+|||.++..+++.+..
T Consensus 18 ~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 18 LGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred cCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 378888888888777644447899999999999999999998863
No 360
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.52 E-value=0.31 Score=55.78 Aligned_cols=98 Identities=9% Similarity=0.057 Sum_probs=54.9
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC-------------CCCCch----hhHHHHhhh----C
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND-------------GVSSHS----EMLMGTLKN----Y 566 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~-------------~~~~~~----~~l~e~vr~----~ 566 (850)
+...++|.||+|+|||+++..||..+........-+++..|-. .-|-++ ..|.++++. +
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 3467899999999999999999987755444444455544411 111111 134444432 3
Q ss_pred CCEEEeeccccccC--HHHHHHHHhhhccCccCceEEEEec
Q 003070 567 EKLVVLVEDIDLAD--PQFIKILADGFETENFGKVIFVLTK 605 (850)
Q Consensus 567 P~sVvlldeiekA~--~~v~~~l~q~~d~G~l~n~Iii~Ts 605 (850)
-|.+||+|=.=..+ .....-|....+.-.-.-+++||+.
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsa 325 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSS 325 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCC
Confidence 47788888776543 3344444443333222234555544
No 361
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.52 E-value=0.17 Score=61.19 Aligned_cols=124 Identities=9% Similarity=0.077 Sum_probs=73.4
Q ss_pred CcHHHHHHHHHHHhcCCCCCe-EEEcCCCchHHHHHHHHHHhHHhCC------C---Cc-----c---cCC--cEEEEee
Q 003070 70 VSKEDIKLVFEVFLRKKRRNT-VIVGDCLSITDALVFDFMGRVERGD------V---PQ-----E---LKQ--THVIKFH 129 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~NP-VLVGe~gvgktAvVegla~rI~~G~------V---P~-----~---Lkg--~~visLd 129 (850)
|-+.-++.+.+.+..++-.+. +|.|++|+|||.+++-|++.+.-.. + |. + ..| ..++.+|
T Consensus 20 GQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEId 99 (700)
T PRK12323 20 GQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMD 99 (700)
T ss_pred CcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEec
Confidence 666667777777777666676 7889999999999999999886411 0 10 0 111 1345544
Q ss_pred cccccccccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcc
Q 003070 130 FAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVS 209 (850)
Q Consensus 130 l~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLk 209 (850)
-+. ..+-+++ ++|++.+......++.-|++|||.|.|-.. +.+ .|||
T Consensus 100 Aas----~~gVDdI----ReLie~~~~~P~~gr~KViIIDEah~Ls~~------------------AaN-------ALLK 146 (700)
T PRK12323 100 AAS----NRGVDEM----AQLLDKAVYAPTAGRFKVYMIDEVHMLTNH------------------AFN-------AMLK 146 (700)
T ss_pred ccc----cCCHHHH----HHHHHHHHhchhcCCceEEEEEChHhcCHH------------------HHH-------HHHH
Confidence 220 1122333 334444332112355689999999998431 211 3666
Q ss_pred cccCCCCCeEEEEecccH
Q 003070 210 DCNSASSTRVWLMATASY 227 (850)
Q Consensus 210 p~l~~arG~lwlIGatT~ 227 (850)
- +|--.+.+.+|.+||.
T Consensus 147 T-LEEPP~~v~FILaTte 163 (700)
T PRK12323 147 T-LEEPPEHVKFILATTD 163 (700)
T ss_pred h-hccCCCCceEEEEeCC
Confidence 3 3323467888888774
No 362
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.44 E-value=0.23 Score=60.24 Aligned_cols=99 Identities=12% Similarity=0.058 Sum_probs=60.3
Q ss_pred CcHHHHHHHHHHHhcCCCCCe-EEEcCCCchHHHHHHHHHHhHHhCC----CCcc----------cCCcEEEEeeccccc
Q 003070 70 VSKEDIKLVFEVFLRKKRRNT-VIVGDCLSITDALVFDFMGRVERGD----VPQE----------LKQTHVIKFHFAPVT 134 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~NP-VLVGe~gvgktAvVegla~rI~~G~----VP~~----------Lkg~~visLdl~~l~ 134 (850)
|.+.-++.+...+.+++-.+. ++.|.+|+|||.++..+|+.+.-.. -|.. -....|+.+|-+.
T Consensus 19 GQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs-- 96 (702)
T PRK14960 19 GQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAAS-- 96 (702)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccc--
Confidence 777778888888876655556 8889999999999999999885321 1100 1112345554220
Q ss_pred ccccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhc
Q 003070 135 LRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVD 176 (850)
Q Consensus 135 ~~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvg 176 (850)
..+.++ +++++..+.-....++.-|++|||+|.|-.
T Consensus 97 --~~~Vdd----IReli~~~~y~P~~gk~KV~IIDEVh~LS~ 132 (702)
T PRK14960 97 --RTKVED----TRELLDNVPYAPTQGRFKVYLIDEVHMLST 132 (702)
T ss_pred --cCCHHH----HHHHHHHHhhhhhcCCcEEEEEechHhcCH
Confidence 111222 344444443211125568999999999843
No 363
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.0049 Score=76.22 Aligned_cols=113 Identities=22% Similarity=0.242 Sum_probs=80.4
Q ss_pred cccccccccCCcCccCCCCCCCCCCCcccchhhcccCCCCCchhhhcccceEeccCCCCCchhHHHHHHHHHHHHHHHHH
Q 003070 683 NTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIF 762 (850)
Q Consensus 683 ~~lDLNl~a~e~e~~~~~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~vvF~~l~~~~~~l~~~i~~~~~~~~~~~l 762 (850)
+++|||+|++.++... ..+.++.......+ ...|..++-+++|+.|.|+++|+ +.+++.|...|.+.|...+
T Consensus 763 d~i~lf~~l~~~~~~~----i~~~~~~e~~~r~~--~~~~~~~v~~~~~~~v~~~~~d~--~ygAr~ikr~i~~~~~~~l 834 (898)
T KOG1051|consen 763 DELDLNLPLDRDELIE----IVNKQLTEIEKRLE--ERELLLLVTDRVDDKVLFKGYDF--DYGARPIKRSIEERFENRL 834 (898)
T ss_pred ceeeeecccchhhHhh----hhhhHHHHHHHHhh--hhHHHHHHHHHHHhhhhhcCcCh--HHHhhHHHHHHHHHHHHHH
Confidence 4699999998554311 11111111111111 13488889999999999999999 5899999999999999999
Q ss_pred ccCCceEEEeCHHHHHHHHhccCCcchhHHHHHHHHHHhhHHHHHHhCCC
Q 003070 763 KRQNKVNFSVEERVLEEVLIGSGFFHNSLFEKWLKEVFQTSLEAVKIGGK 812 (850)
Q Consensus 763 ~~~~~~~l~vd~~~~e~l~~~~~~~~~r~le~wie~vl~~~l~~~~~~g~ 812 (850)
+.. +.++|++++.++|+.+.+|.+ + ++++.+.|..++.+..
T Consensus 835 a~~--~l~ei~~~~~~~i~~~~~~~~-~------~e~~~~~l~~~~~~~~ 875 (898)
T KOG1051|consen 835 AEA--LLGEVEDGLTERILVADGWSQ-G------KEVFQPQLETVKKKVF 875 (898)
T ss_pred hhh--heeeecCCceEEEEecccccc-c------hhhhcchhheeccccc
Confidence 988 559999999999999886765 3 5555555555555543
No 364
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.41 E-value=0.12 Score=58.89 Aligned_cols=99 Identities=13% Similarity=0.198 Sum_probs=63.7
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC------------------CCCCchhhHHHHhhhCCCE
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------------------GVSSHSEMLMGTLKNYEKL 569 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~------------------~~~~~~~~l~e~vr~~P~s 569 (850)
+....++.|++|+|||.++.++|..+-......+.++..+..+ ....-++.|.+.+.+....
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~ 160 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPD 160 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCc
Confidence 4568889999999999999999987755545666666533100 0112245677888887778
Q ss_pred EEeeccccccC-----------HHHHHHHHhhhccCccCceEEEEecC
Q 003070 570 VVLVEDIDLAD-----------PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 570 VvlldeiekA~-----------~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+|++|+|--.. .++...+.+.++-.+-.|+.+|+|..
T Consensus 161 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvgh 208 (372)
T cd01121 161 LVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGH 208 (372)
T ss_pred EEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEee
Confidence 99999984321 23444444444433444677777654
No 365
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.39 E-value=0.081 Score=57.79 Aligned_cols=36 Identities=17% Similarity=0.403 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhH
Q 003070 75 IKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRV 111 (850)
Q Consensus 75 irrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI 111 (850)
...+++.|.. .+++.+|||++|+|||++++.+.+..
T Consensus 22 ~~~ll~~l~~-~~~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 22 YSYLLDLLLS-NGRPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp HHHHHHHHHH-CTEEEEEESSTTSSHHHHHHHHHHCS
T ss_pred HHHHHHHHHH-cCCcEEEECCCCCchhHHHHhhhccC
Confidence 4557777875 57789999999999999999887653
No 366
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.37 E-value=0.22 Score=54.47 Aligned_cols=97 Identities=8% Similarity=0.034 Sum_probs=60.0
Q ss_pred CCcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHH
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLT 148 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rlk 148 (850)
.|+++.+..+...+.+++..+-+|.|++|+|||.+++.++..+..... ...++.++.+. ......+...++
T Consensus 20 ~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-----~~~~i~~~~~~----~~~~~~~~~~i~ 90 (319)
T PRK00440 20 VGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDW-----RENFLELNASD----ERGIDVIRNKIK 90 (319)
T ss_pred cCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-----ccceEEecccc----ccchHHHHHHHH
Confidence 378888888888887766667899999999999999999988754321 12344443221 111122333444
Q ss_pred HHHHHHhccccCCCCeEEEecchhhhhc
Q 003070 149 ELKRKVDSLTSVGGGAIIYTGDLKWTVD 176 (850)
Q Consensus 149 eL~~~V~~~~~~~~gvILfIdELh~lvg 176 (850)
++....-. ...+.-+|+|||++.+-.
T Consensus 91 ~~~~~~~~--~~~~~~vviiDe~~~l~~ 116 (319)
T PRK00440 91 EFARTAPV--GGAPFKIIFLDEADNLTS 116 (319)
T ss_pred HHHhcCCC--CCCCceEEEEeCcccCCH
Confidence 33322111 112357999999988743
No 367
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.34 E-value=0.34 Score=57.55 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=54.9
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcC----CCCceEEecCccccC----------CCCC--c-----hhhHHHHhhh-
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFG----STDLLFHIDMRKRND----------GVSS--H-----SEMLMGTLKN- 565 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfg----s~~~~i~idms~~~~----------~~~~--~-----~~~l~e~vr~- 565 (850)
....+.|+||+|+|||+++..||..+.- ..-.+|..| .|.. ...+ + .+.|...+++
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD--tyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD--TQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc--cccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh
Confidence 3578899999999999999999975432 223344444 3210 0001 0 1235555543
Q ss_pred CCCEEEeeccccccCH--HHHHHHHhhhccCccCceEEEEecC
Q 003070 566 YEKLVVLVEDIDLADP--QFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 566 ~P~sVvlldeiekA~~--~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.-|.+||+|..=..+. .....|. .|....-...++|+.++
T Consensus 427 ~~~DLVLIDTaG~s~~D~~l~eeL~-~L~aa~~~a~lLVLpAt 468 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRDRALAAQLN-WLRAARQVTSLLVLPAN 468 (559)
T ss_pred ccCCEEEecCCCcchhhHHHHHHHH-HHHHhhcCCcEEEEECC
Confidence 3488999999875433 3322232 23332223677788777
No 368
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.33 E-value=0.11 Score=52.45 Aligned_cols=87 Identities=17% Similarity=0.253 Sum_probs=56.5
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCc---eEEe--------------cCcccc--------CCCC--C-c-h----
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDL---LFHI--------------DMRKRN--------DGVS--S-H-S---- 556 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~---~i~i--------------dms~~~--------~~~~--~-~-~---- 556 (850)
--++..||+|||||++++.||+.|=...-. |+.- |+..-+ .+.| | | |
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~ 85 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEG 85 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHH
Confidence 457899999999999999999998544211 2111 222100 0111 0 1 1
Q ss_pred -h-hHHHHhhh--CCCEEEeeccccc---cCHHHHHHHHhhhccCcc
Q 003070 557 -E-MLMGTLKN--YEKLVVLVEDIDL---ADPQFIKILADGFETENF 596 (850)
Q Consensus 557 -~-~l~e~vr~--~P~sVvlldeiek---A~~~v~~~l~q~~d~G~l 596 (850)
+ ....+|++ .--.||.+|||-+ ..+.+...+-++|++++-
T Consensus 86 le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp 132 (179)
T COG1618 86 LEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKP 132 (179)
T ss_pred HHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCc
Confidence 1 35566665 4457999999854 678888888889988885
No 369
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.33 E-value=0.26 Score=57.99 Aligned_cols=144 Identities=10% Similarity=0.101 Sum_probs=77.5
Q ss_pred CcHHHHHHHHHHHhcCCCCC-eEEEcCCCchHHHHHHHHHHhHHhCCC----Ccc----------cCCcEEEEeeccccc
Q 003070 70 VSKEDIKLVFEVFLRKKRRN-TVIVGDCLSITDALVFDFMGRVERGDV----PQE----------LKQTHVIKFHFAPVT 134 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~N-PVLVGe~gvgktAvVegla~rI~~G~V----P~~----------Lkg~~visLdl~~l~ 134 (850)
|.+.-++.+...+.+++-.+ -+|.|+||+|||.+++.+|..+....- |.. -....++.++-+
T Consensus 18 Gq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa--- 94 (472)
T PRK14962 18 GQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAA--- 94 (472)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCc---
Confidence 55555555555555544434 388999999999999999998764221 110 011134444321
Q ss_pred ccccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCC
Q 003070 135 LRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSA 214 (850)
Q Consensus 135 ~~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~ 214 (850)
..+|- ..++++.+.+......+..-||+|||+|.+-.. +.+ .||+ .++.
T Consensus 95 ---~~~gi--d~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~------------------a~~-------~LLk-~LE~ 143 (472)
T PRK14962 95 ---SNRGI--DEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE------------------AFN-------ALLK-TLEE 143 (472)
T ss_pred ---ccCCH--HHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH------------------HHH-------HHHH-HHHh
Confidence 12221 112344444442111245679999999998431 221 2333 2222
Q ss_pred CCCeEEEEecccHHHHHhhhhcCCcccccccceeeecCCC
Q 003070 215 SSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSG 254 (850)
Q Consensus 215 arG~lwlIGatT~eeY~K~iekdPaLEr~W~LQ~V~Vps~ 254 (850)
..+.+.+|++||+.. + -.|+|.+| +|.+..+..
T Consensus 144 p~~~vv~Ilattn~~--k---l~~~L~SR--~~vv~f~~l 176 (472)
T PRK14962 144 PPSHVVFVLATTNLE--K---VPPTIISR--CQVIEFRNI 176 (472)
T ss_pred CCCcEEEEEEeCChH--h---hhHHHhcC--cEEEEECCc
Confidence 246788888887422 2 25677775 466655433
No 370
>PHA02774 E1; Provisional
Probab=94.32 E-value=0.13 Score=61.31 Aligned_cols=99 Identities=13% Similarity=0.183 Sum_probs=64.1
Q ss_pred HHHHHHHHhhhCCC-CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhhhCCCEEEee
Q 003070 495 SIVEVLVECKSAKK-ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLV 573 (850)
Q Consensus 495 ~Ia~av~~~r~gk~-~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~~P~sVvll 573 (850)
.+..++..--.|.| ..-++|.||+++|||.+|.+|+.++-|..-+||.. . ..-+++-|.++ .|++|
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~--~-----s~FwLqpl~d~------ki~vl 485 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS--K-----SHFWLQPLADA------KIALL 485 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC--c-----cccccchhccC------CEEEE
Confidence 45555554444544 36888999999999999999999996544344432 1 12356677766 69999
Q ss_pred ccccccCHHHHH-HHHhhhccCcc------------CceEEEEecC
Q 003070 574 EDIDLADPQFIK-ILADGFETENF------------GKVIFVLTKG 606 (850)
Q Consensus 574 deiekA~~~v~~-~l~q~~d~G~l------------~n~Iii~Tsn 606 (850)
||+-.+-..... .|..+||--.+ +-.=+|.|||
T Consensus 486 DD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN 531 (613)
T PHA02774 486 DDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSN 531 (613)
T ss_pred ecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecC
Confidence 999555323333 55555554422 2344677899
No 371
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.30 E-value=0.078 Score=57.89 Aligned_cols=95 Identities=23% Similarity=0.379 Sum_probs=57.7
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCC------CCCchh----hHHHHhhhCCCEEEeeccccccC
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG------VSSHSE----MLMGTLKNYEKLVVLVEDIDLAD 580 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~------~~~~~~----~l~e~vr~~P~sVvlldeiekA~ 580 (850)
-+||+||+|+|||.+++.+=..+-...-..+.+.+|.+..+ -...+. ..... ..+-..|+|+||+--+-
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP-~~~k~lv~fiDDlN~p~ 113 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGP-PGGKKLVLFIDDLNMPQ 113 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEE-ESSSEEEEEEETTT-S-
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCC-CCCcEEEEEecccCCCC
Confidence 57999999999999998866554333223456777753110 000000 00001 12345699999998765
Q ss_pred HH------HHHHHHhhhccCcc-----------CceEEEEecC
Q 003070 581 PQ------FIKILADGFETENF-----------GKVIFVLTKG 606 (850)
Q Consensus 581 ~~------v~~~l~q~~d~G~l-----------~n~Iii~Tsn 606 (850)
++ ...+|.|.||.|-+ .|+.||.+.|
T Consensus 114 ~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~ 156 (272)
T PF12775_consen 114 PDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMN 156 (272)
T ss_dssp --TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEES
T ss_pred CCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecC
Confidence 32 56899999999864 3888888777
No 372
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=94.26 E-value=0.13 Score=55.32 Aligned_cols=96 Identities=11% Similarity=0.085 Sum_probs=58.6
Q ss_pred cHHHHHHHHHHHhc--CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecc--------cc--ccccc
Q 003070 71 SKEDIKLVFEVFLR--KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFA--------PV--TLRFM 138 (850)
Q Consensus 71 RdeeirrVieIL~R--r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~--------~l--~~~~~ 138 (850)
||.++++|.+.|.. +..+-.+|+|.+|+|||.++..++++-... ....+.-.+.+.-. .+ .++..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~---~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIK---NRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHC---CCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccc---ccccccccccccccccccccccccccccccc
Confidence 79999999999998 345557788999999999999999873322 12222222222200 00 01111
Q ss_pred -----ChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhh
Q 003070 139 -----KKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWT 174 (850)
Q Consensus 139 -----~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~l 174 (850)
...+.++....|.+.++ +..++|.+||+...
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~L~-----~~~~LlVlDdv~~~ 113 (287)
T PF00931_consen 78 DSSISDPKDIEELQDQLRELLK-----DKRCLLVLDDVWDE 113 (287)
T ss_dssp -STSSCCSSHHHHHHHHHHHHC-----CTSEEEEEEEE-SH
T ss_pred ccccccccccccccccchhhhc-----cccceeeeeeeccc
Confidence 22345555666666555 34899999997544
No 373
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=94.24 E-value=0.11 Score=51.23 Aligned_cols=40 Identities=23% Similarity=0.281 Sum_probs=28.4
Q ss_pred CCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHH-HHHHHHHHhcC
Q 003070 487 PWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRR-LALSIAESVFG 535 (850)
Q Consensus 487 ~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~-lA~~LA~~lfg 535 (850)
++|.+++..+.... .-+++.||+|+|||. ++..+.+.+..
T Consensus 11 ~~Q~~~~~~~~~~~---------~~~~i~~~~GsGKT~~~~~~~~~~~~~ 51 (201)
T smart00487 11 PYQKEAIEALLSGL---------RDVILAAPTGSGKTLAALLPALEALKR 51 (201)
T ss_pred HHHHHHHHHHHcCC---------CcEEEECCCCCchhHHHHHHHHHHhcc
Confidence 46777776655433 467899999999999 55555565554
No 374
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.21 E-value=0.11 Score=56.09 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeeccccc--cccc-ChhHHHHHHHH
Q 003070 73 EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVT--LRFM-KKEEVEMNLTE 149 (850)
Q Consensus 73 eeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~--~~~~-~RgefE~Rlke 149 (850)
..+++..+-+- .++|-+|.|.||||||=++-+++..+.+. |.+|+-+.++.+. +... ..|..+.+|..
T Consensus 93 ~~~~~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~~~-------g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~ 163 (254)
T COG1484 93 EDLASLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELLKA-------GISVLFITAPDLLSKLKAAFDEGRLEEKLLR 163 (254)
T ss_pred HHHHHHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHHHHHhcCchHHHHHH
Confidence 34444554444 68999999999999999999999998853 6677777655332 1111 12345555444
Q ss_pred HHHHHhccccCCCCeEEEecchhhh
Q 003070 150 LKRKVDSLTSVGGGAIIYTGDLKWT 174 (850)
Q Consensus 150 L~~~V~~~~~~~~gvILfIdELh~l 174 (850)
. ++. -=+|+||||-..
T Consensus 164 ~---l~~------~dlLIiDDlG~~ 179 (254)
T COG1484 164 E---LKK------VDLLIIDDIGYE 179 (254)
T ss_pred H---hhc------CCEEEEecccCc
Confidence 3 333 248999999664
No 375
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.079 Score=58.63 Aligned_cols=81 Identities=20% Similarity=0.198 Sum_probs=58.2
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeE
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAI 165 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvI 165 (850)
.|.|.+|||+.|+|||=+++-||+.+ +||-.+.++. .|.=+|---+++|.=|-.|+....=-......=|
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~L---nVPFaiADAT-------tLTEAGYVGEDVENillkLlqaadydV~rAerGI 165 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKIL---NVPFAIADAT-------TLTEAGYVGEDVENILLKLLQAADYDVERAERGI 165 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHh---CCCeeecccc-------chhhccccchhHHHHHHHHHHHcccCHHHHhCCe
Confidence 58999999999999999999999876 6887776653 3333343488999988888764321000012347
Q ss_pred EEecchhhhhc
Q 003070 166 IYTGDLKWTVD 176 (850)
Q Consensus 166 LfIdELh~lvg 176 (850)
+|||||.-|.-
T Consensus 166 IyIDEIDKIar 176 (408)
T COG1219 166 IYIDEIDKIAR 176 (408)
T ss_pred EEEechhhhhc
Confidence 89999999864
No 376
>PRK05541 adenylylsulfate kinase; Provisional
Probab=94.18 E-value=0.086 Score=53.07 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=30.8
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
...++|.|++|+|||++|++|++.+.......+.+|..
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d 44 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGD 44 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecH
Confidence 34678999999999999999999997655566777653
No 377
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.16 E-value=0.19 Score=52.21 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.7
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
-++.++||.|.|||++.+.|+-.+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 588899999999999999999655
No 378
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.15 E-value=0.25 Score=58.64 Aligned_cols=99 Identities=8% Similarity=0.021 Sum_probs=60.1
Q ss_pred CcHHHHHHHHHHHhcCCCCCe-EEEcCCCchHHHHHHHHHHhHHhCCCCc-----------cc-CCc--EEEEeeccccc
Q 003070 70 VSKEDIKLVFEVFLRKKRRNT-VIVGDCLSITDALVFDFMGRVERGDVPQ-----------EL-KQT--HVIKFHFAPVT 134 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~NP-VLVGe~gvgktAvVegla~rI~~G~VP~-----------~L-kg~--~visLdl~~l~ 134 (850)
|-+.-++.+...+...+-.+. ++.|++|+|||.+++-+|+.+.--.-+. .+ .|. -|+.+|-+
T Consensus 20 Gq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaa--- 96 (509)
T PRK14958 20 GQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAA--- 96 (509)
T ss_pred CCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEccc---
Confidence 667777777778877667776 7889999999999999999885321111 00 111 25555522
Q ss_pred ccccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhc
Q 003070 135 LRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVD 176 (850)
Q Consensus 135 ~~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvg 176 (850)
...+.++ ++++++.+.-....+..=|++|||+|.+-.
T Consensus 97 -s~~~v~~----iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~ 133 (509)
T PRK14958 97 -SRTKVED----TRELLDNIPYAPTKGRFKVYLIDEVHMLSG 133 (509)
T ss_pred -ccCCHHH----HHHHHHHHhhccccCCcEEEEEEChHhcCH
Confidence 1112233 334444443211124456889999999854
No 379
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.13 E-value=0.21 Score=52.82 Aligned_cols=98 Identities=13% Similarity=0.175 Sum_probs=57.3
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccc-----------c--------CC--------CC--------
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR-----------N--------DG--------VS-------- 553 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~-----------~--------~~--------~~-------- 553 (850)
....++.||+|+|||.+|.+++..........+.+++.+. . .+ +.
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~ 104 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNSTL 104 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCcch
Confidence 4667788999999999999997544445566666655431 0 00 00
Q ss_pred --CchhhHHHHhhhCCCEEEeecccc----ccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 554 --SHSEMLMGTLKNYEKLVVLVEDID----LADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 554 --~~~~~l~e~vr~~P~sVvlldeie----kA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
..+..+.+.+.+..+.+|++|++- -.+......++..+..=+-+++.+++|+.
T Consensus 105 ~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~ 163 (234)
T PRK06067 105 ANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLH 163 (234)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 011356667777678899999988 34443333332223110113555666666
No 380
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.12 E-value=0.067 Score=53.35 Aligned_cols=82 Identities=20% Similarity=0.185 Sum_probs=50.8
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhhhCCCEEEeeccccccCHHHHHHHHhh
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADG 590 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~ 590 (850)
-+|.+|.+|+|||++|.+||+.. .|-.|+||.+-+...-|-| .-| -|---+||| ..|.+.|-..
T Consensus 9 NILvtGTPG~GKstl~~~lae~~-----~~~~i~isd~vkEn~l~~g-yDE-----~y~c~i~DE-----dkv~D~Le~~ 72 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKT-----GLEYIEISDLVKENNLYEG-YDE-----EYKCHILDE-----DKVLDELEPL 72 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHh-----CCceEehhhHHhhhcchhc-ccc-----cccCccccH-----HHHHHHHHHH
Confidence 57899999999999999999654 4778888875221111111 011 122334443 3455566555
Q ss_pred hccCc----------cC----ceEEEEecCCC
Q 003070 591 FETEN----------FG----KVIFVLTKGDS 608 (850)
Q Consensus 591 ~d~G~----------l~----n~Iii~Tsn~~ 608 (850)
|..|- |. +.|||||+--+
T Consensus 73 m~~Gg~IVDyHgCd~FperwfdlVvVLr~~~s 104 (176)
T KOG3347|consen 73 MIEGGNIVDYHGCDFFPERWFDLVVVLRTPNS 104 (176)
T ss_pred HhcCCcEEeecccCccchhheeEEEEEecCch
Confidence 55554 22 99999999743
No 381
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.09 E-value=0.2 Score=51.15 Aligned_cols=94 Identities=14% Similarity=0.046 Sum_probs=52.0
Q ss_pred EEEecCCchHHHHHHHHHHHHhc---------CCCCceE-------EecCccccCCCC-Cchh---hHHHHhhh--CCCE
Q 003070 512 FLLQGNDTIGKRRLALSIAESVF---------GSTDLLF-------HIDMRKRNDGVS-SHSE---MLMGTLKN--YEKL 569 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lf---------gs~~~~i-------~idms~~~~~~~-~~~~---~l~e~vr~--~P~s 569 (850)
+++.||.+.|||.+.|.++-.++ +..-.+- ++...+.-..+. .|.. ++..++.. +| +
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~-~ 80 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATEN-S 80 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCC-e
Confidence 56999999999999999995443 2211111 111111111111 2222 67777776 54 6
Q ss_pred EEeecccccc-CHHHHHHHHh-hhccCc-cCceEEEEecC
Q 003070 570 VVLVEDIDLA-DPQFIKILAD-GFETEN-FGKVIFVLTKG 606 (850)
Q Consensus 570 VvlldeiekA-~~~v~~~l~q-~~d~G~-l~n~Iii~Tsn 606 (850)
++|+||.-+. |+.....+.+ +++.=. -.++.+|++|.
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH 120 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATH 120 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 9999999875 5553333322 222111 12566777776
No 382
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=94.07 E-value=0.39 Score=51.76 Aligned_cols=96 Identities=13% Similarity=0.084 Sum_probs=66.3
Q ss_pred eEEEEecCCc-hHHHHHHHHHHHHhcCCC------CceEEecCccccC--CCCCchh---hHHHHhhhC----CCEEEee
Q 003070 510 TWFLLQGNDT-IGKRRLALSIAESVFGST------DLLFHIDMRKRND--GVSSHSE---MLMGTLKNY----EKLVVLV 573 (850)
Q Consensus 510 ~~~lf~Gp~g-vGKt~lA~~LA~~lfgs~------~~~i~idms~~~~--~~~~~~~---~l~e~vr~~----P~sVvll 573 (850)
-.+||.|..+ .+|..++.-++..+|... ..+..+....-.. +..=.++ .|.+.+... +|.|+++
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViII 95 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAII 95 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEEE
Confidence 3456999998 999999999999998752 1122221110000 0011234 355555544 4689999
Q ss_pred ccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 574 EDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 574 deiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+++|+-.....|.||..+|+-- .+++|||+|.
T Consensus 96 ~~ae~mt~~AANALLKtLEEPP-~~t~fILit~ 127 (263)
T PRK06581 96 YSAELMNLNAANSCLKILEDAP-KNSYIFLITS 127 (263)
T ss_pred echHHhCHHHHHHHHHhhcCCC-CCeEEEEEeC
Confidence 9999999999999999999955 5888888776
No 383
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=94.03 E-value=0.099 Score=54.70 Aligned_cols=96 Identities=23% Similarity=0.269 Sum_probs=55.8
Q ss_pred EEEEecCCchHHHHHHHHHH-HHhcCCCCce--EEecCccc----cC------CCCCchh------h----HHHHh---h
Q 003070 511 WFLLQGNDTIGKRRLALSIA-ESVFGSTDLL--FHIDMRKR----ND------GVSSHSE------M----LMGTL---K 564 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA-~~lfgs~~~~--i~idms~~----~~------~~~~~~~------~----l~e~v---r 564 (850)
-++++|++|+||+.++..|. +.+|-+.... +.-....+ +. .-||+.+ . +.+++ .
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~ 81 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCS 81 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhcc
Confidence 36899999999999888763 3334322110 00011111 01 1244432 2 33322 2
Q ss_pred hCCCEEEeec---cccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 565 NYEKLVVLVE---DIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 565 ~~P~sVvlld---eiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
..||.|+|+= .+...+..++..|.++|...-++|+|||+|..
T Consensus 82 ~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~ 126 (212)
T PF04548_consen 82 PGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVVFTHA 126 (212)
T ss_dssp T-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEG
T ss_pred CCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHHhhhc
Confidence 3588888763 34445788899999999998899999999975
No 384
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.03 E-value=0.12 Score=52.37 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=51.0
Q ss_pred CcHHHHHHHHHHHhc--CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHH
Q 003070 70 VSKEDIKLVFEVFLR--KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNL 147 (850)
Q Consensus 70 gRdeeirrVieIL~R--r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rl 147 (850)
|.+..++++++-+.+ ....+.+|.||+|+||+-+++.+-..-. -++..||.++.+.+ +.+.+|..|
T Consensus 3 G~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~-------r~~~pfi~vnc~~~-----~~~~~e~~L 70 (168)
T PF00158_consen 3 GESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSP-------RKNGPFISVNCAAL-----PEELLESEL 70 (168)
T ss_dssp --SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCST-------TTTS-EEEEETTTS------HHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhh-------cccCCeEEEehhhh-----hcchhhhhh
Confidence 344555666655544 3557788889999999887766544222 24567999987644 334444332
Q ss_pred HH------------HHHHHhccccCCCCeEEEecchhhhh
Q 003070 148 TE------------LKRKVDSLTSVGGGAIIYTGDLKWTV 175 (850)
Q Consensus 148 ke------------L~~~V~~~~~~~~gvILfIdELh~lv 175 (850)
=. -...+++ ..|=+||||||..|=
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~----A~~GtL~Ld~I~~L~ 106 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQ----ANGGTLFLDEIEDLP 106 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHH----TTTSEEEEETGGGS-
T ss_pred hccccccccccccccCCceee----ccceEEeecchhhhH
Confidence 00 0012333 235689999999873
No 385
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.02 E-value=0.86 Score=51.02 Aligned_cols=40 Identities=15% Similarity=0.102 Sum_probs=30.0
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
+..-++|+||+|+|||+++..||..+-.......-+|+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 3467889999999999999999988765444444455443
No 386
>PRK08181 transposase; Validated
Probab=94.02 E-value=0.058 Score=58.87 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=46.6
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeE
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAI 165 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvI 165 (850)
.++|.+|+|+||+|||-++.+++..+.+ +|.+|+-+....+. .-.....-+..+.++++.+.+ -=+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~-------~g~~v~f~~~~~L~-~~l~~a~~~~~~~~~l~~l~~------~dL 170 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIE-------NGWRVLFTRTTDLV-QKLQVARRELQLESAIAKLDK------FDL 170 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHH-------cCCceeeeeHHHHH-HHHHHHHhCCcHHHHHHHHhc------CCE
Confidence 5789999999999999999999887654 34555555543221 111111111223333444433 358
Q ss_pred EEecchhhhh
Q 003070 166 IYTGDLKWTV 175 (850)
Q Consensus 166 LfIdELh~lv 175 (850)
|.|||++.+-
T Consensus 171 LIIDDlg~~~ 180 (269)
T PRK08181 171 LILDDLAYVT 180 (269)
T ss_pred EEEecccccc
Confidence 9999998653
No 387
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.01 E-value=0.19 Score=50.78 Aligned_cols=96 Identities=16% Similarity=0.080 Sum_probs=62.0
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc-------------c-cCC------------CCCch-h----
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK-------------R-NDG------------VSSHS-E---- 557 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~-------------~-~~~------------~~~~~-~---- 557 (850)
.--+.+.||+|+|||+|++.||-++--+.-. |.+|-.. | ... +..+. |
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qr 106 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKPQQGE-ITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQR 106 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCCE-EEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHH
Confidence 3456699999999999999999886533332 3333210 0 000 00111 1
Q ss_pred -hHHHHhhhCCCEEEeeccccc-cCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 558 -MLMGTLKNYEKLVVLVEDIDL-ADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 558 -~l~e~vr~~P~sVvlldeiek-A~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.|+.++-.+| .|++|||--- -|+.....|.+.+.+=. +++.||++|..
T Consensus 107 v~laral~~~p-~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~ 156 (178)
T cd03247 107 LALARILLQDA-PIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHH 156 (178)
T ss_pred HHHHHHHhcCC-CEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecC
Confidence 5899999999 4999999884 47888888888776532 34555665653
No 388
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=93.99 E-value=0.095 Score=57.30 Aligned_cols=63 Identities=22% Similarity=0.168 Sum_probs=45.0
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCC-CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAK-KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk-~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
.-++||.+|-.+-.=.+-..|+.| ..--+||.||.|+|||.||.++|+.| |+.-.|+.+--||
T Consensus 38 ~g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlAlaisqEL-G~kvPFcpmvgSE 101 (456)
T KOG1942|consen 38 AGFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALALAISQEL-GPKVPFCPMVGSE 101 (456)
T ss_pred cccccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHHHHHHHHh-CCCCCcccccchh
Confidence 346888776544333333333332 23467899999999999999999998 8888888777666
No 389
>PRK04195 replication factor C large subunit; Provisional
Probab=93.99 E-value=0.17 Score=59.67 Aligned_cols=92 Identities=11% Similarity=0.010 Sum_probs=58.5
Q ss_pred CCcHHHHHHHHHHHhcCC----CCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHH
Q 003070 69 SVSKEDIKLVFEVFLRKK----RRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVE 144 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~----K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE 144 (850)
-|.++.++.+.+.+.+.. .++.+|.|+||+|||.+++.||+.+ +..++.++-+.. .....+.
T Consensus 17 vg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----------~~~~ielnasd~----r~~~~i~ 82 (482)
T PRK04195 17 VGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----------GWEVIELNASDQ----RTADVIE 82 (482)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEccccc----ccHHHHH
Confidence 378888888888876532 5678889999999999999999876 345666554311 1123333
Q ss_pred HHHHHHHHHHhccccCCCCeEEEecchhhhhc
Q 003070 145 MNLTELKRKVDSLTSVGGGAIIYTGDLKWTVD 176 (850)
Q Consensus 145 ~RlkeL~~~V~~~~~~~~gvILfIdELh~lvg 176 (850)
..+.+.... .+.. ..+.-||+|||++.+-+
T Consensus 83 ~~i~~~~~~-~sl~-~~~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 83 RVAGEAATS-GSLF-GARRKLILLDEVDGIHG 112 (482)
T ss_pred HHHHHhhcc-Cccc-CCCCeEEEEecCccccc
Confidence 332222111 1110 02578999999998865
No 390
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.93 E-value=0.082 Score=60.61 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=30.9
Q ss_pred HHHHHHhc-CCCCCeEEEcCCCchHHHHHHHHHHhHHhC
Q 003070 77 LVFEVFLR-KKRRNTVIVGDCLSITDALVFDFMGRVERG 114 (850)
Q Consensus 77 rVieIL~R-r~K~NPVLVGe~gvgktAvVegla~rI~~G 114 (850)
|+|+++.. .++-..+|||++|+|||-++..++..|..+
T Consensus 157 R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 157 RVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred eeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 56677765 356678999999999999999999888765
No 391
>PLN03025 replication factor C subunit; Provisional
Probab=93.92 E-value=0.32 Score=54.11 Aligned_cols=97 Identities=8% Similarity=0.058 Sum_probs=57.8
Q ss_pred CcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHH
Q 003070 70 VSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTE 149 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rlke 149 (850)
|.++-+.++-.++..++-.|-+|.|+||+|||.++..+|..+..... ...++.++-+. ....+.+.++++.
T Consensus 17 g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~eln~sd----~~~~~~vr~~i~~ 87 (319)
T PLN03025 17 GNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY-----KEAVLELNASD----DRGIDVVRNKIKM 87 (319)
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-----ccceeeecccc----cccHHHHHHHHHH
Confidence 55555555555555555567799999999999999999998753211 12344433221 1123455555555
Q ss_pred HHHHHhccccCCCCeEEEecchhhhhc
Q 003070 150 LKRKVDSLTSVGGGAIIYTGDLKWTVD 176 (850)
Q Consensus 150 L~~~V~~~~~~~~gvILfIdELh~lvg 176 (850)
........ ..+..-|++|||+|.+-.
T Consensus 88 ~~~~~~~~-~~~~~kviiiDE~d~lt~ 113 (319)
T PLN03025 88 FAQKKVTL-PPGRHKIVILDEADSMTS 113 (319)
T ss_pred HHhccccC-CCCCeEEEEEechhhcCH
Confidence 43221110 013467999999999854
No 392
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.92 E-value=0.24 Score=49.62 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=28.5
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
.++|.||+|+|||.++..||..+-......+.+|+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 3689999999999999999988765545555555543
No 393
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.88 E-value=0.11 Score=56.85 Aligned_cols=91 Identities=15% Similarity=0.148 Sum_probs=55.7
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCC-------ceEEecC-cccc----CCCC-----------Cc--hhhHHHHhhh
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTD-------LLFHIDM-RKRN----DGVS-----------SH--SEMLMGTLKN 565 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~-------~~i~idm-s~~~----~~~~-----------~~--~~~l~e~vr~ 565 (850)
.+++.||+|+|||++.+.||..+..... .+..+|- ++.. .-+. ++ ..-+..+++.
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~~ 192 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIRS 192 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHHh
Confidence 5679999999999999999998865422 2223331 1110 0000 01 1135667775
Q ss_pred CCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 566 YEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 566 ~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
..-.|+++||+- ..+....+++++.+| ..+|+|+.+
T Consensus 193 ~~P~villDE~~--~~e~~~~l~~~~~~G----~~vI~ttH~ 228 (270)
T TIGR02858 193 MSPDVIVVDEIG--REEDVEALLEALHAG----VSIIATAHG 228 (270)
T ss_pred CCCCEEEEeCCC--cHHHHHHHHHHHhCC----CEEEEEech
Confidence 555599999985 345556666666654 456777764
No 394
>PRK13764 ATPase; Provisional
Probab=93.80 E-value=0.17 Score=61.05 Aligned_cols=82 Identities=17% Similarity=0.094 Sum_probs=50.5
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEe-cCccccCC--------CCCchh-hHHHHhhhCCCEEEeeccccccC
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHI-DMRKRNDG--------VSSHSE-MLMGTLKNYEKLVVLVEDIDLAD 580 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~i-dms~~~~~--------~~~~~~-~l~e~vr~~P~sVvlldeiekA~ 580 (850)
-+|+.||||+|||+++.+|++.+-.....++.+ |-.|+.-. ..+... .....+|.+|- +|++||+-.
T Consensus 259 ~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~~~~~~~~~~~lLR~rPD-~IivGEiRd-- 335 (602)
T PRK13764 259 GILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKLEGSMEETADILLLVRPD-YTIYDEMRK-- 335 (602)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeeccccHHHHHHHHHhhCCC-EEEECCCCC--
Confidence 489999999999999999999986443333344 23332100 001112 23334788887 999999985
Q ss_pred HHHHHHHHhhhccCc
Q 003070 581 PQFIKILADGFETEN 595 (850)
Q Consensus 581 ~~v~~~l~q~~d~G~ 595 (850)
.+.+..+..+-..|.
T Consensus 336 ~Et~~~~~~l~~ag~ 350 (602)
T PRK13764 336 TEDFKIFADMRLAGV 350 (602)
T ss_pred HHHHHHHHHHHHcCC
Confidence 445555544333344
No 395
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.78 E-value=0.61 Score=47.31 Aligned_cols=89 Identities=12% Similarity=0.084 Sum_probs=53.3
Q ss_pred hhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcccc---CCCCCchh-----------hHHHHhhhCCCE
Q 003070 504 KSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRN---DGVSSHSE-----------MLMGTLKNYEKL 569 (850)
Q Consensus 504 r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~---~~~~~~~~-----------~l~e~vr~~P~s 569 (850)
+.+.+...+.|.|++|+|||++|+.|+..++......+.+|..... ....+|.. .+...+.+.-+
T Consensus 13 ~~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~- 91 (184)
T TIGR00455 13 LNGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVAKLFVRNGI- 91 (184)
T ss_pred HhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHcCCC-
Confidence 4556667889999999999999999999987544456667643321 11122221 23333444444
Q ss_pred EEeeccccccCHHHHHHHHhhhccC
Q 003070 570 VVLVEDIDLADPQFIKILADGFETE 594 (850)
Q Consensus 570 VvlldeiekA~~~v~~~l~q~~d~G 594 (850)
+|++|-+ ......+..+.+.++..
T Consensus 92 ~VI~d~~-~~~~~~r~~~~~~~~~~ 115 (184)
T TIGR00455 92 IVITSFI-SPYRADRQMVRELIEKG 115 (184)
T ss_pred EEEEecC-CCCHHHHHHHHHhCcCC
Confidence 4446654 34455556666655544
No 396
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.26 Score=56.95 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=54.1
Q ss_pred EEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeEEEecc
Q 003070 91 VIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGD 170 (850)
Q Consensus 91 VLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdE 170 (850)
+|.|+||.|||++++.+|-- .++.|+.+- +-++.+..-||-|.-+..|....+. ...-|+||||
T Consensus 190 LLfGPpgtGKtmL~~aiAsE----------~~atff~iS--assLtsK~~Ge~eK~vralf~vAr~----~qPsvifidE 253 (428)
T KOG0740|consen 190 LLFGPPGTGKTMLAKAIATE----------SGATFFNIS--ASSLTSKYVGESEKLVRALFKVARS----LQPSVIFIDE 253 (428)
T ss_pred heecCCCCchHHHHHHHHhh----------hcceEeecc--HHHhhhhccChHHHHHHHHHHHHHh----cCCeEEEech
Confidence 48999999999999887642 235566554 4455666788887777777776665 4577888999
Q ss_pred hhhhhcCC
Q 003070 171 LKWTVDQQ 178 (850)
Q Consensus 171 Lh~lvgag 178 (850)
++-++...
T Consensus 254 idslls~R 261 (428)
T KOG0740|consen 254 IDSLLSKR 261 (428)
T ss_pred hHHHHhhc
Confidence 99999987
No 397
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=93.72 E-value=0.2 Score=51.76 Aligned_cols=92 Identities=16% Similarity=0.159 Sum_probs=50.2
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCc----------------------hhhHHHHhhhCC
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSH----------------------SEMLMGTLKNYE 567 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~----------------------~~~l~e~vr~~P 567 (850)
.-+++.|+.|+|||+++..+.+.+. ...++.||-.++....|.| .+.+.+....+-
T Consensus 16 ~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~~~ 93 (199)
T PF06414_consen 16 TLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIENR 93 (199)
T ss_dssp EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred EEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566899999999999999988775 6778888776653222211 124444455666
Q ss_pred CEEEeeccccccCHHHHHHHHhhhcc-CccCceEEEEecC
Q 003070 568 KLVVLVEDIDLADPQFIKILADGFET-ENFGKVIFVLTKG 606 (850)
Q Consensus 568 ~sVvlldeiekA~~~v~~~l~q~~d~-G~l~n~Iii~Tsn 606 (850)
+.||+ |.. ..++.....+++.+.+ |.- -.|+++.++
T Consensus 94 ~nii~-E~t-l~~~~~~~~~~~~~k~~GY~-v~l~~v~~~ 130 (199)
T PF06414_consen 94 YNIIF-EGT-LSNPSKLRKLIREAKAAGYK-VELYYVAVP 130 (199)
T ss_dssp --EEE-E---TTSSHHHHHHHHHHHCTT-E-EEEEEE---
T ss_pred CCEEE-ecC-CCChhHHHHHHHHHHcCCce-EEEEEEECC
Confidence 66665 543 4566666656665554 654 344444443
No 398
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=93.70 E-value=0.079 Score=69.88 Aligned_cols=80 Identities=19% Similarity=0.317 Sum_probs=63.0
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC----------CCCC----chhhHHHHhhhCCCEEEeeccc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND----------GVSS----HSEMLMGTLKNYEKLVVLVEDI 576 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~----------~~~~----~~~~l~e~vr~~P~sVvlldei 576 (850)
-+||.||+++|||.|++-||+.. ..++++|.--+..+ .+.| -.+.|.+|+|+- ..++||+|
T Consensus 442 pillqG~tssGKtsii~~la~~~---g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G--~~~vlD~l 516 (1856)
T KOG1808|consen 442 PILLQGPTSSGKTSIIKELARAT---GKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNG--DWIVLDEL 516 (1856)
T ss_pred CeEEecCcCcCchhHHHHHHHHh---ccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhC--CEEEeccc
Confidence 57899999999999999999998 47788885433211 1111 124788998775 58999999
Q ss_pred cccCHHHHHHHHhhhccCc
Q 003070 577 DLADPQFIKILADGFETEN 595 (850)
Q Consensus 577 ekA~~~v~~~l~q~~d~G~ 595 (850)
.-|+.+|++.|.+.+|+-|
T Consensus 517 nla~~dvL~aLnrllddnR 535 (1856)
T KOG1808|consen 517 NLAPHDVLEALNRLLDDNR 535 (1856)
T ss_pred cccchHHHHHHHhhhhhhc
Confidence 9999999999999999965
No 399
>PRK10536 hypothetical protein; Provisional
Probab=93.69 E-value=0.13 Score=55.85 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=21.2
Q ss_pred EEEEecCCchHHHHHHHHHHHH-hcCC
Q 003070 511 WFLLQGNDTIGKRRLALSIAES-VFGS 536 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~-lfgs 536 (850)
-.++.||.|+|||.||.++|.. +...
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~~l~~~ 102 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAEALIHK 102 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 5567899999999999999984 4343
No 400
>PRK04296 thymidine kinase; Provisional
Probab=93.67 E-value=0.18 Score=51.95 Aligned_cols=91 Identities=9% Similarity=0.020 Sum_probs=52.5
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEecC--cc-ccC----CCCC---------chhhHHHHh--hhCCCEEEee
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDM--RK-RND----GVSS---------HSEMLMGTL--KNYEKLVVLV 573 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idm--s~-~~~----~~~~---------~~~~l~e~v--r~~P~sVvll 573 (850)
.++.||.|+|||++|..+|..+-+.....+-+.- .. +.. ..-| ..+.+...+ ..+.+.||++
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvviI 84 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVLI 84 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEEE
Confidence 4689999999999999999877555555554421 11 111 0001 112233333 3457889999
Q ss_pred ccccccCHH-HHHHHHhhhccCccCceEEEEecC
Q 003070 574 EDIDLADPQ-FIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 574 deiekA~~~-v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
||+..-+.+ +..++..+-+. +..+|+|.-
T Consensus 85 DEaq~l~~~~v~~l~~~l~~~----g~~vi~tgl 114 (190)
T PRK04296 85 DEAQFLDKEQVVQLAEVLDDL----GIPVICYGL 114 (190)
T ss_pred EccccCCHHHHHHHHHHHHHc----CCeEEEEec
Confidence 999766544 54444333333 455666554
No 401
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=93.67 E-value=0.2 Score=64.88 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=68.4
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC---------C-CCCc----hhhHHHHhhhCCCEEEeeccc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND---------G-VSSH----SEMLMGTLKNYEKLVVLVEDI 576 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~---------~-~~~~----~~~l~e~vr~~P~sVvlldei 576 (850)
=+++.||-|.||+.|.-+|+..+ | +.+|+|++++.-. + .||- -|.|++||..- .-|||.+|
T Consensus 151 pI~l~g~~gsgksfLisel~~~~-G--~~iV~Ihl~e~TDak~LiGtYts~KpG~fEw~~GvL~~avv~G--~WILf~~I 225 (4600)
T COG5271 151 PIYLEGGRGSGKSFLISELCDEG-G--QRIVEIHLREITDAKVLIGTYTSPKPGDFEWMKGVLIEAVVSG--DWILFKRI 225 (4600)
T ss_pred ceEEecCccccHHHHHHHHHHHh-C--ceEEEEecccccCchheeeeccCCCCCceeeccchhhhhhhcC--cEEEEeec
Confidence 46789999999999999999988 3 8999999998522 1 3442 35899999876 56999999
Q ss_pred cccCHHHHHHHHhhhccCcc
Q 003070 577 DLADPQFIKILADGFETENF 596 (850)
Q Consensus 577 ekA~~~v~~~l~q~~d~G~l 596 (850)
|||...|...|+-.++.-+|
T Consensus 226 dkap~~vLs~Ll~llekR~L 245 (4600)
T COG5271 226 DKAPHGVLSYLLTLLEKRRL 245 (4600)
T ss_pred ccCchhHHHHHHHHHHhhhh
Confidence 99999999999999999886
No 402
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.079 Score=61.85 Aligned_cols=121 Identities=12% Similarity=0.138 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhhhC-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEec--Cc
Q 003070 470 SAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID--MR 546 (850)
Q Consensus 470 ~~~~~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id--ms 546 (850)
.++|--+...++...||+- .+.|+ +.| +..-=+|+.||+|+|||-||++|-..|=+.+..++.=- ++
T Consensus 226 Ld~EFs~IFRRAFAsRvFp-p~vie---------~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~ 295 (744)
T KOG0741|consen 226 LDKEFSDIFRRAFASRVFP-PEVIE---------QLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILN 295 (744)
T ss_pred chHHHHHHHHHHHHhhcCC-HHHHH---------HcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHH
Confidence 3344455666777777654 33332 235 44556788999999999999999999977666654210 12
Q ss_pred cccCCCCCchh--------hHHHHh----hhCCC---EEEeeccccc-------------cCHHHHHHHHhhhccCc-cC
Q 003070 547 KRNDGVSSHSE--------MLMGTL----KNYEK---LVVLVEDIDL-------------ADPQFIKILADGFETEN-FG 597 (850)
Q Consensus 547 ~~~~~~~~~~~--------~l~e~v----r~~P~---sVvlldeiek-------------A~~~v~~~l~q~~d~G~-l~ 597 (850)
+ ||| .+++|= +..+- -||+|||||- .|-.|.|-||--||-=. |-
T Consensus 296 K-------YVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLN 368 (744)
T KOG0741|consen 296 K-------YVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLN 368 (744)
T ss_pred H-------hhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhh
Confidence 2 444 344442 22222 2999999985 47788888887776322 66
Q ss_pred ceEEEEecCC
Q 003070 598 KVIFVLTKGD 607 (850)
Q Consensus 598 n~Iii~Tsn~ 607 (850)
|.++|=.+|-
T Consensus 369 NILVIGMTNR 378 (744)
T KOG0741|consen 369 NILVIGMTNR 378 (744)
T ss_pred cEEEEeccCc
Confidence 8888877773
No 403
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=0.11 Score=60.00 Aligned_cols=68 Identities=25% Similarity=0.326 Sum_probs=42.5
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhh----HHHHhhhCCCEEEeeccccc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEM----LMGTLKNYEKLVVLVEDIDL 578 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~----l~e~vr~~P~sVvlldeiek 578 (850)
+...+|+-||.|+|||.||+++|-.. ...|..|--|.--..-+|-.+. |-..-|..-++|||+||||+
T Consensus 185 p~rglLLfGPpgtGKtmL~~aiAsE~---~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEids 256 (428)
T KOG0740|consen 185 PVRGLLLFGPPGTGKTMLAKAIATES---GATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDS 256 (428)
T ss_pred ccchhheecCCCCchHHHHHHHHhhh---cceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHH
Confidence 34688899999999999999999654 2344433322211111121122 33334677788999999875
No 404
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.60 E-value=0.45 Score=47.71 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=61.0
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc------ccC--------------CCCCchh------hHHH
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK------RND--------------GVSSHSE------MLMG 561 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~------~~~--------------~~~~~~~------~l~e 561 (850)
+.-.+.+.||+|+|||+|++.|+-++--+.-. |.++-.. ++. .+..+.+ .|+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~lar 104 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGSGR-IGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFAR 104 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCce-EEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHH
Confidence 44567899999999999999999876432222 2232100 000 0111111 5888
Q ss_pred HhhhCCCEEEeecccccc-CHHHHHHHHhhhccCccCceEEEEec
Q 003070 562 TLKNYEKLVVLVEDIDLA-DPQFIKILADGFETENFGKVIFVLTK 605 (850)
Q Consensus 562 ~vr~~P~sVvlldeiekA-~~~v~~~l~q~~d~G~l~n~Iii~Ts 605 (850)
++-.+|. |++|||---+ |+..+..|.+.|.+ +.-+|||.|-
T Consensus 105 al~~~p~-~lllDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsh 146 (166)
T cd03223 105 LLLHKPK-FVFLDEATSALDEESEDRLYQLLKE--LGITVISVGH 146 (166)
T ss_pred HHHcCCC-EEEEECCccccCHHHHHHHHHHHHH--hCCEEEEEeC
Confidence 9999995 9999998854 88888888888875 3345544443
No 405
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.58 E-value=0.71 Score=53.73 Aligned_cols=98 Identities=24% Similarity=0.226 Sum_probs=55.6
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhc---CCCCceEEecCcccc---------C--CCC--------CchhhHHHH---h
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVF---GSTDLLFHIDMRKRN---------D--GVS--------SHSEMLMGT---L 563 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lf---gs~~~~i~idms~~~---------~--~~~--------~~~~~l~e~---v 563 (850)
-..++|.||+|+|||++|..||..+. |..-.+|..|.-.-. + .-| ...+...++ +
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~ 178 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYA 178 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998865 333445555532100 0 000 011122222 3
Q ss_pred hhCCCEEEeecccccc--CHHHHHHHHhhhccCccCceEEEEecC
Q 003070 564 KNYEKLVVLVEDIDLA--DPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 564 r~~P~sVvlldeiekA--~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+.+-|.+|++|=-=.. |.....-|.+..+.-.-..+++|+.++
T Consensus 179 ~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~ 223 (428)
T TIGR00959 179 KENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAM 223 (428)
T ss_pred HhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEecc
Confidence 4566788888876543 344444444443322233667777554
No 406
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.58 E-value=0.38 Score=48.40 Aligned_cols=96 Identities=14% Similarity=0.093 Sum_probs=59.6
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc---c------------cCCC----CC-----ch-h-----h
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK---R------------NDGV----SS-----HS-E-----M 558 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~---~------------~~~~----~~-----~~-~-----~ 558 (850)
.-.+.+.||+|+|||+|.+.||-++--..-. |.+|-.. + ...+ .+ +. | .
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~ 106 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLRPTSGR-VRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLG 106 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCCCCCe-EEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHH
Confidence 3456799999999999999999876432222 3343211 0 0000 01 11 1 5
Q ss_pred HHHHhhhCCCEEEeecccccc-CHHHHHHHHhhhccCccCceEEEEecC
Q 003070 559 LMGTLKNYEKLVVLVEDIDLA-DPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 559 l~e~vr~~P~sVvlldeiekA-~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
|+.++-.+|. |+||||---+ |+..+..|.+.+.+=+-.+..||++|.
T Consensus 107 la~al~~~p~-~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh 154 (173)
T cd03246 107 LARALYGNPR-ILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAH 154 (173)
T ss_pred HHHHHhcCCC-EEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 8888999986 9999998754 777777777777543222444555554
No 407
>PRK08727 hypothetical protein; Validated
Probab=93.55 E-value=0.36 Score=51.33 Aligned_cols=67 Identities=9% Similarity=0.098 Sum_probs=46.7
Q ss_pred CeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeEEEe
Q 003070 89 NTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYT 168 (850)
Q Consensus 89 NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfI 168 (850)
--+|.|.+|+|||-++..++....+. |.+++-+.+ .++..++.+.++.+.+ --+|.|
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~-------~~~~~y~~~----------~~~~~~~~~~~~~l~~------~dlLiI 99 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQA-------GRSSAYLPL----------QAAAGRLRDALEALEG------RSLVAL 99 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEeH----------HHhhhhHHHHHHHHhc------CCEEEE
Confidence 36788999999999999998876653 345555443 2344556666665554 358999
Q ss_pred cchhhhhcCC
Q 003070 169 GDLKWTVDQQ 178 (850)
Q Consensus 169 dELh~lvgag 178 (850)
||++++.+..
T Consensus 100 DDi~~l~~~~ 109 (233)
T PRK08727 100 DGLESIAGQR 109 (233)
T ss_pred eCcccccCCh
Confidence 9999987643
No 408
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.54 E-value=0.27 Score=48.50 Aligned_cols=97 Identities=16% Similarity=0.069 Sum_probs=61.7
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC-------CCCCch-----h-----hHHHHhhhCCCEEE
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND-------GVSSHS-----E-----MLMGTLKNYEKLVV 571 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~-------~~~~~~-----~-----~l~e~vr~~P~sVv 571 (850)
.-...+.||+|.|||.|.++|+-.+--. .--|.+|-..... ..-+|+ | .|+.++-..| .++
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~~-~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~-~i~ 102 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKPT-SGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNP-DLL 102 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC-ccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCC-CEE
Confidence 3456699999999999999999776432 2224554321100 111221 2 4888888888 599
Q ss_pred eeccccc-cCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 572 LVEDIDL-ADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 572 lldeiek-A~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
+|||..- -|+.-...|.+++..=+-.+..||++|..
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~ 139 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 9999984 47777777777776422123455666653
No 409
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.46 E-value=0.28 Score=49.34 Aligned_cols=98 Identities=11% Similarity=0.095 Sum_probs=60.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc---cc-----C------CCC-----C-----ch-h----
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK---RN-----D------GVS-----S-----HS-E---- 557 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~---~~-----~------~~~-----~-----~~-~---- 557 (850)
.+..++.++||+|+|||+|.+.||-++--..-. |.++-.. +. . ..+ + +. |
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~r 104 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGE-ILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQR 104 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCE-EEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHH
Confidence 345678899999999999999999876433222 3333211 00 0 000 1 11 1
Q ss_pred -hHHHHhhhCCCEEEeeccccc-cCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 558 -MLMGTLKNYEKLVVLVEDIDL-ADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 558 -~l~e~vr~~P~sVvlldeiek-A~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.|+.++-.+| .|+||||--- -|+..+..|.+.+..=+ .++.|||+|..
T Consensus 105 l~la~al~~~p-~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~ 154 (171)
T cd03228 105 IAIARALLRDP-PILILDEATSALDPETEALILEALRALA-KGKTVIVIAHR 154 (171)
T ss_pred HHHHHHHhcCC-CEEEEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEecC
Confidence 4888898999 5999999763 36666666666665321 24566676764
No 410
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.45 E-value=0.29 Score=49.65 Aligned_cols=98 Identities=15% Similarity=0.102 Sum_probs=62.3
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc---cc-------------------------cCCCCCchh--
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR---KR-------------------------NDGVSSHSE-- 557 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms---~~-------------------------~~~~~~~~~-- 557 (850)
+.-.+.+.||+|+|||+|.+.|+-++--..-. |.+|-. .+ +..+..+.+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~-v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKPSSGE-ILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE-EEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 34567799999999999999999876433222 334321 10 001111211
Q ss_pred ----hHHHHhhhCCCEEEeeccccc-cCHHHHHHHHhhhccCccC-ceEEEEecCC
Q 003070 558 ----MLMGTLKNYEKLVVLVEDIDL-ADPQFIKILADGFETENFG-KVIFVLTKGD 607 (850)
Q Consensus 558 ----~l~e~vr~~P~sVvlldeiek-A~~~v~~~l~q~~d~G~l~-n~Iii~Tsn~ 607 (850)
.|+.++-.+|. |+||||--- -|+.....|.+.|.+=+=. ++.||++|..
T Consensus 103 ~qrl~laral~~~p~-llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~ 157 (180)
T cd03214 103 RQRVLLARALAQEPP-ILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD 157 (180)
T ss_pred HHHHHHHHHHhcCCC-EEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 58888999995 999999874 4788888888877642212 4455666653
No 411
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.45 E-value=0.14 Score=61.83 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=25.3
Q ss_pred CCEEEeeccccccCHHHHHHHHhhhccC
Q 003070 567 EKLVVLVEDIDLADPQFIKILADGFETE 594 (850)
Q Consensus 567 P~sVvlldeiekA~~~v~~~l~q~~d~G 594 (850)
|+.||++||.-..+...+..|++++..|
T Consensus 259 ~~dvlIiDEaSMvd~~l~~~ll~al~~~ 286 (586)
T TIGR01447 259 PLDVLVVDEASMVDLPLMAKLLKALPPN 286 (586)
T ss_pred cccEEEEcccccCCHHHHHHHHHhcCCC
Confidence 6789999999999999999999998754
No 412
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=93.44 E-value=0.25 Score=49.32 Aligned_cols=97 Identities=14% Similarity=0.102 Sum_probs=60.9
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecC---ccc------------cCCCCCchh--hHHHHhhhC---CCE
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDM---RKR------------NDGVSSHSE--MLMGTLKNY---EKL 569 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idm---s~~------------~~~~~~~~~--~l~e~vr~~---P~s 569 (850)
.-.++.||.|.||+.+.++++-.++.......|-+- ..+ ..-..|... .|+.++... +.+
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~~~ 101 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRP 101 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCCCC
Confidence 367899999999999999998888777633333110 000 000112222 577777753 567
Q ss_pred EEeecccccc-CHHHHHHHHhhhccCccCceEEEEecC
Q 003070 570 VVLVEDIDLA-DPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 570 VvlldeiekA-~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
++||||+... |+.-...+.+++.+-.-.++.+|++|.
T Consensus 102 llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH 139 (162)
T cd03227 102 LYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITH 139 (162)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 9999999976 676666666665543222456666665
No 413
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=93.44 E-value=0.63 Score=51.89 Aligned_cols=117 Identities=21% Similarity=0.310 Sum_probs=72.8
Q ss_pred cCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceE----
Q 003070 466 ELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLF---- 541 (850)
Q Consensus 466 ~~~~~~~~~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i---- 541 (850)
.|....+..|..|...|.+. +....-++++|.+||||+.+...|- |....++
T Consensus 15 ~~~~~tq~~l~~~l~~l~~~--------------------~~~~~rIllvGktGVGKSSliNsIl----G~~v~~vs~f~ 70 (313)
T TIGR00991 15 QFPPATQTKLLELLGKLKEE--------------------DVSSLTILVMGKGGVGKSSTVNSII----GERIATVSAFQ 70 (313)
T ss_pred cCCHHHHHHHHHHHHhcccc--------------------cccceEEEEECCCCCCHHHHHHHHh----CCCcccccCCC
Confidence 35555667788888888776 2345678999999999999887765 3221111
Q ss_pred -------EecCccccC------CCCCchh------hHHHHhh-----hCCCEEEeeccccc--cC---HHHHHHHHhhhc
Q 003070 542 -------HIDMRKRND------GVSSHSE------MLMGTLK-----NYEKLVVLVEDIDL--AD---PQFIKILADGFE 592 (850)
Q Consensus 542 -------~idms~~~~------~~~~~~~------~l~e~vr-----~~P~sVvlldeiek--A~---~~v~~~l~q~~d 592 (850)
..... .+. .-||+.+ ...+.++ ..|+.|++++.++. .+ ..+.+.|.+.|-
T Consensus 71 s~t~~~~~~~~~-~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG 149 (313)
T TIGR00991 71 SEGLRPMMVSRT-RAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFG 149 (313)
T ss_pred CcceeEEEEEEE-ECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhh
Confidence 01100 011 1234332 2223333 26999999987763 33 567777778886
Q ss_pred cCccCceEEEEecCC
Q 003070 593 TENFGKVIFVLTKGD 607 (850)
Q Consensus 593 ~G~l~n~Iii~Tsn~ 607 (850)
+.-.+++||++|-..
T Consensus 150 ~~iw~~~IVVfTh~d 164 (313)
T TIGR00991 150 KDIWRKSLVVLTHAQ 164 (313)
T ss_pred hhhhccEEEEEECCc
Confidence 666789999998763
No 414
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.28 Score=55.31 Aligned_cols=76 Identities=12% Similarity=0.084 Sum_probs=56.1
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccC-hhHHHHHHHHHHHHHhccccCCCCeE
Q 003070 87 RRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMK-KEEVEMNLTELKRKVDSLTSVGGGAI 165 (850)
Q Consensus 87 K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~-RgefE~RlkeL~~~V~~~~~~~~gvI 165 (850)
-++.+|-|+||.|||-+++.+|.+ +|+.+|.+.++.+. . + =||-|.=++.+--.... =.+.|
T Consensus 127 ~kGiLL~GPpG~GKTmlAKA~Ake----------aga~fInv~~s~lt--~-KWfgE~eKlv~AvFslAsK----l~P~i 189 (386)
T KOG0737|consen 127 PKGILLYGPPGTGKTMLAKAIAKE----------AGANFINVSVSNLT--S-KWFGEAQKLVKAVFSLASK----LQPSI 189 (386)
T ss_pred CccceecCCCCchHHHHHHHHHHH----------cCCCcceeeccccc--h-hhHHHHHHHHHHHHhhhhh----cCcce
Confidence 468899999999999999888876 56788998888552 1 1 35544444444444443 34899
Q ss_pred EEecchhhhhcCCc
Q 003070 166 IYTGDLKWTVDQQE 179 (850)
Q Consensus 166 LfIdELh~lvgag~ 179 (850)
+||||+-.+.+...
T Consensus 190 IFIDEvds~L~~R~ 203 (386)
T KOG0737|consen 190 IFIDEVDSFLGQRR 203 (386)
T ss_pred eehhhHHHHHhhcc
Confidence 99999999999873
No 415
>PF13173 AAA_14: AAA domain
Probab=93.40 E-value=0.16 Score=48.53 Aligned_cols=72 Identities=11% Similarity=0.160 Sum_probs=45.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeEE
Q 003070 87 RRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAII 166 (850)
Q Consensus 87 K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvIL 166 (850)
++..+|.|..+||||-+++.+++... ...+++-+++..... +...+.. +.+.+.+. ...+..+|
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~--------~~~~~~yi~~~~~~~----~~~~~~~---~~~~~~~~-~~~~~~~i 65 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL--------PPENILYINFDDPRD----RRLADPD---LLEYFLEL-IKPGKKYI 65 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc--------ccccceeeccCCHHH----HHHhhhh---hHHHHHHh-hccCCcEE
Confidence 45678999999999999999998766 234566666553211 1111111 22222221 01367999
Q ss_pred Eecchhhh
Q 003070 167 YTGDLKWT 174 (850)
Q Consensus 167 fIdELh~l 174 (850)
||||+|.+
T Consensus 66 ~iDEiq~~ 73 (128)
T PF13173_consen 66 FIDEIQYL 73 (128)
T ss_pred EEehhhhh
Confidence 99999988
No 416
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.37 E-value=0.16 Score=54.87 Aligned_cols=127 Identities=12% Similarity=0.147 Sum_probs=78.6
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeE
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAI 165 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvI 165 (850)
--+|.+.-|.||.|||-.++.||.. -+|| ++.+.-. .+=|-.=||-.+|+.+|-...++ ..+.|
T Consensus 150 APknVLFyGppGTGKTm~Akalane---~kvp-------~l~vkat--~liGehVGdgar~Ihely~rA~~----~aPci 213 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANE---AKVP-------LLLVKAT--ELIGEHVGDGARRIHELYERARK----AAPCI 213 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcc---cCCc-------eEEechH--HHHHHHhhhHHHHHHHHHHHHHh----cCCeE
Confidence 4579999999999999999888753 3455 2222211 12234467888899999988887 46899
Q ss_pred EEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCccccccc
Q 003070 166 IYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWA 245 (850)
Q Consensus 166 LfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr~W~ 245 (850)
+|||||..|.=+..-.. -.|. ....+.++..||-.+- .+--+-.|+||..-+- .|||+-.||.
T Consensus 214 vFiDE~DAiaLdRryQe----lRGD--VsEiVNALLTelDgi~------eneGVvtIaaTN~p~~-----LD~aiRsRFE 276 (368)
T COG1223 214 VFIDELDAIALDRRYQE----LRGD--VSEIVNALLTELDGIK------ENEGVVTIAATNRPEL-----LDPAIRSRFE 276 (368)
T ss_pred EEehhhhhhhhhhhHHH----hccc--HHHHHHHHHHhccCcc------cCCceEEEeecCChhh-----cCHHHHhhhh
Confidence 99999998854331100 0010 1123333333333222 1223888998875543 4788888773
No 417
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.26 E-value=0.19 Score=62.62 Aligned_cols=92 Identities=11% Similarity=0.055 Sum_probs=55.0
Q ss_pred CcHHHHHHHHHHHhcC------CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeeccccc----ccc--
Q 003070 70 VSKEDIKLVFEVFLRK------KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVT----LRF-- 137 (850)
Q Consensus 70 gRdeeirrVieIL~Rr------~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~----~~~-- 137 (850)
|-++-.++|.+.+.-+ ++..-+|+|.||+|||.+++.+|..+. ..++.+.++.+. +.+
T Consensus 324 G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~----------~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 324 GLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN----------RKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred ChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc----------CCeEEEeCCCcccHHHHcCCC
Confidence 5666677777765421 234578999999999999999998763 334555433210 011
Q ss_pred -cChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhc
Q 003070 138 -MKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVD 176 (850)
Q Consensus 138 -~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvg 176 (850)
.+-|....++.+....... ..+ |++|||++-+..
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~----~~~-villDEidk~~~ 428 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKT----KNP-LFLLDEIDKIGS 428 (775)
T ss_pred CceeCCCCchHHHHHHHhCc----CCC-EEEEechhhcCC
Confidence 1123334455444443332 223 778999999964
No 418
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=93.24 E-value=0.43 Score=49.37 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.7
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
--++++||.|.|||++.+.||..++
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~ 54 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVL 54 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHH
Confidence 4678999999999999999996554
No 419
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=93.12 E-value=0.36 Score=52.16 Aligned_cols=100 Identities=19% Similarity=0.251 Sum_probs=57.0
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHh-cCC--C-CceEEecCccc--cC------CCCCchh---------h----HHHH
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESV-FGS--T-DLLFHIDMRKR--ND------GVSSHSE---------M----LMGT 562 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~l-fgs--~-~~~i~idms~~--~~------~~~~~~~---------~----l~e~ 562 (850)
...-++++|.+|+||+.+..+|...- +-. . ..-.+..+... +. .-||+.+ . +...
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~ 109 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRY 109 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHH
Confidence 34788999999999999988876421 100 0 00111111000 00 1234332 1 2222
Q ss_pred hh-hCCCEEEeeccccc-----cCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 563 LK-NYEKLVVLVEDIDL-----ADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 563 vr-~~P~sVvlldeiek-----A~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
+. ..++.|++++-++. .+..+...|.+.|...-++|+|||+|--+
T Consensus 110 l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d 160 (249)
T cd01853 110 LKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAA 160 (249)
T ss_pred HhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCc
Confidence 32 35778888876764 33456666777776666789999998763
No 420
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.10 E-value=0.073 Score=49.69 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.4
Q ss_pred EEEecCCchHHHHHHHHHHHHh
Q 003070 512 FLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.++.|++|+|||++|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999997
No 421
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.06 E-value=0.63 Score=53.62 Aligned_cols=125 Identities=17% Similarity=0.176 Sum_probs=70.8
Q ss_pred CeEEEcCCCchHHHHHHHHHHhHHhCC---CCc--------ccC----CcEEEEeecccccccccChhHHHHHHHHHHHH
Q 003070 89 NTVIVGDCLSITDALVFDFMGRVERGD---VPQ--------ELK----QTHVIKFHFAPVTLRFMKKEEVEMNLTELKRK 153 (850)
Q Consensus 89 NPVLVGe~gvgktAvVegla~rI~~G~---VP~--------~Lk----g~~visLdl~~l~~~~~~RgefE~RlkeL~~~ 153 (850)
.-++.|++|+|||.++..+|+.+.-.. -|. ... +.+++..+-. ..+.++ ++++.+.
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~-----~i~i~~----iR~l~~~ 108 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGL-----SIGVDE----VRELVTI 108 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccc-----cCCHHH----HHHHHHH
Confidence 356889999999999999999876532 110 001 1223322210 112333 3455544
Q ss_pred HhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhh
Q 003070 154 VDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKC 233 (850)
Q Consensus 154 V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~ 233 (850)
+......++.-|++|||+|.+-.. +.+ .|||..-+...+.+++++|++.+.-
T Consensus 109 ~~~~p~~~~~kViiIDead~m~~~------------------aan-------aLLk~LEep~~~~~fIL~a~~~~~l--- 160 (394)
T PRK07940 109 AARRPSTGRWRIVVIEDADRLTER------------------AAN-------ALLKAVEEPPPRTVWLLCAPSPEDV--- 160 (394)
T ss_pred HHhCcccCCcEEEEEechhhcCHH------------------HHH-------HHHHHhhcCCCCCeEEEEECChHHC---
Confidence 432112245679999999998432 111 2444221224567999999885433
Q ss_pred hhcCCcccccccceeeecCCCC
Q 003070 234 QMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 234 iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
.|++-+| .|.+.++.++
T Consensus 161 ---lpTIrSR--c~~i~f~~~~ 177 (394)
T PRK07940 161 ---LPTIRSR--CRHVALRTPS 177 (394)
T ss_pred ---hHHHHhh--CeEEECCCCC
Confidence 3566554 5788887665
No 422
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.04 E-value=0.26 Score=57.56 Aligned_cols=99 Identities=15% Similarity=0.204 Sum_probs=62.5
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC------------------CCCCchhhHHHHhhhCCCE
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------------------GVSSHSEMLMGTLKNYEKL 569 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~------------------~~~~~~~~l~e~vr~~P~s 569 (850)
+....++.|++|+|||.++.++|..+-......+.++..+.-+ ....-++.|.+.++++...
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~ 158 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPD 158 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCC
Confidence 4567889999999999999999987653345667776543100 0112245677788887778
Q ss_pred EEeeccccccCH-----------HHHHHHHhhhccCccCceEEEEecC
Q 003070 570 VVLVEDIDLADP-----------QFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 570 VvlldeiekA~~-----------~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+|++|.|--... +++..+.+.+.--+=.|+.+|+|..
T Consensus 159 lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~h 206 (446)
T PRK11823 159 LVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGH 206 (446)
T ss_pred EEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 999999864321 2333333333333334677777643
No 423
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.03 E-value=0.31 Score=49.03 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=60.6
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc-------------c-cCCC---CC--------ch-h----
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK-------------R-NDGV---SS--------HS-E---- 557 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~-------------~-~~~~---~~--------~~-~---- 557 (850)
+.-.+.+.||+|+|||+|.+.||-.+--..-. |.+|-.. | ...+ ++ +. |
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qr 103 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKPDSGE-IKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQR 103 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHH
Confidence 34567799999999999999999875322221 2232110 0 0000 11 11 1
Q ss_pred -hHHHHhhhCCCEEEeecccccc-CHHHHHHHHhhhccCccCceEEEEecC
Q 003070 558 -MLMGTLKNYEKLVVLVEDIDLA-DPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 558 -~l~e~vr~~P~sVvlldeiekA-~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.|+.++-.+|. |+|+||---+ |+..+..|++.|.+=.=+++.+|++|.
T Consensus 104 v~laral~~~p~-illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th 153 (173)
T cd03230 104 LALAQALLHDPE-LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSH 153 (173)
T ss_pred HHHHHHHHcCCC-EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 48888999995 9999998865 788888888877753222344455454
No 424
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=92.98 E-value=0.23 Score=59.28 Aligned_cols=61 Identities=11% Similarity=0.069 Sum_probs=43.2
Q ss_pred CcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhC-CCCcccCCcEEEEeecc
Q 003070 70 VSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERG-DVPQELKQTHVIKFHFA 131 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G-~VP~~Lkg~~visLdl~ 131 (850)
|.++-++.+...++-.+-.+.+|.|++|+|||.+++.+.+--.+- .-| .-.+..++.+|..
T Consensus 69 Gqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~-~~~~~~fi~id~~ 130 (531)
T TIGR02902 69 GQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASP-FKEGAAFVEIDAT 130 (531)
T ss_pred CcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCC-cCCCCCEEEEccc
Confidence 778888888877776666788999999999999998876543322 111 1124678888754
No 425
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=92.93 E-value=0.13 Score=54.74 Aligned_cols=85 Identities=20% Similarity=0.315 Sum_probs=58.2
Q ss_pred CeEE--EEecCCchHHHHHHHHHHHHhcCCCCce-----EEecCcc-cc---CC--------------CCCchhhHHHHh
Q 003070 509 ATWF--LLQGNDTIGKRRLALSIAESVFGSTDLL-----FHIDMRK-RN---DG--------------VSSHSEMLMGTL 563 (850)
Q Consensus 509 ~~~~--lf~Gp~gvGKt~lA~~LA~~lfgs~~~~-----i~idms~-~~---~~--------------~~~~~~~l~e~v 563 (850)
.+|+ |+.||+++|||++-+.||+++-...+.| .-+|=+. -. .+ +..-..-+-+++
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaI 214 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAI 214 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHH
Confidence 3676 8999999999999999999997664443 3345332 10 01 111123578899
Q ss_pred hhCCCEEEeeccccccCHHHHHHHHhhhccCc
Q 003070 564 KNYEKLVVLVEDIDLADPQFIKILADGFETEN 595 (850)
Q Consensus 564 r~~P~sVvlldeiekA~~~v~~~l~q~~d~G~ 595 (850)
|..---|+++|||-.-+ --..++.+++.|.
T Consensus 215 rsm~PEViIvDEIGt~~--d~~A~~ta~~~GV 244 (308)
T COG3854 215 RSMSPEVIIVDEIGTEE--DALAILTALHAGV 244 (308)
T ss_pred HhcCCcEEEEeccccHH--HHHHHHHHHhcCc
Confidence 99888899999997543 3346777888775
No 426
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=92.91 E-value=0.47 Score=57.03 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=70.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHh-cCCCCceEEecCcc-------ccC------------CCCCch----------
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESV-FGSTDLLFHIDMRK-------RND------------GVSSHS---------- 556 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~l-fgs~~~~i~idms~-------~~~------------~~~~~~---------- 556 (850)
++..|+|..||+|+|||.|-|+||.+- +|+..--+.-|+.- |.. .++.+-
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~ 496 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHK 496 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHH
Confidence 467999999999999999999999764 45433222222210 110 010010
Q ss_pred ----------------------h-----hHHHHhhhCCCEEEeecccccc-CHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 557 ----------------------E-----MLMGTLKNYEKLVVLVEDIDLA-DPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 557 ----------------------~-----~l~e~vr~~P~sVvlldeiekA-~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
| .++..+-.+|. +|+|||---| |++....|+|.+.+ ++.+++||..+..
T Consensus 497 vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~-~v~LDEATsALDe~~e~~l~q~l~~-~lp~~tvISV~Hr 573 (604)
T COG4178 497 VGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPK-WVFLDEATSALDEETEDRLYQLLKE-ELPDATVISVGHR 573 (604)
T ss_pred cCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCC-EEEEecchhccChHHHHHHHHHHHh-hCCCCEEEEeccc
Confidence 0 36777889998 8999998876 89999999999876 6778999987763
No 427
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=92.90 E-value=0.085 Score=58.45 Aligned_cols=33 Identities=12% Similarity=0.315 Sum_probs=28.4
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
-++++||||+|||.||-.||+. +| .+|+.|-..
T Consensus 6 ii~I~GpTasGKS~LAl~LA~~-~~---eIIsaDS~Q 38 (300)
T PRK14729 6 IVFIFGPTAVGKSNILFHFPKG-KA---EIINVDSIQ 38 (300)
T ss_pred EEEEECCCccCHHHHHHHHHHh-CC---cEEeccHHH
Confidence 4679999999999999999999 54 689999543
No 428
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.84 E-value=0.1 Score=51.66 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=22.0
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.-++|.||.|+|||++|++||+.+
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 357889999999999999999998
No 429
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.81 E-value=0.56 Score=51.71 Aligned_cols=134 Identities=10% Similarity=0.102 Sum_probs=83.4
Q ss_pred CCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeEEE
Q 003070 88 RNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIY 167 (850)
Q Consensus 88 ~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvILf 167 (850)
+--+|-|+||.||.-+++.+|.- .|-.|+++.-+-|+. .--||-|.-++.|....++ ..+-|+|
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATE----------AnSTFFSvSSSDLvS--KWmGESEkLVknLFemARe----~kPSIIF 230 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATE----------ANSTFFSVSSSDLVS--KWMGESEKLVKNLFEMARE----NKPSIIF 230 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhh----------cCCceEEeehHHHHH--HHhccHHHHHHHHHHHHHh----cCCcEEE
Confidence 45689999999998888777643 456788876554321 1168989889999999987 5789999
Q ss_pred ecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccccccce
Q 003070 168 TGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQ 247 (850)
Q Consensus 168 IdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr~W~LQ 247 (850)
||||..+.|.+.. ++ .+|.+.+-.|+-=-+...|. ....+-++|||..-- ..|.|+-|||+ .
T Consensus 231 iDEiDslcg~r~e-nE----------seasRRIKTEfLVQMqGVG~-d~~gvLVLgATNiPw-----~LDsAIRRRFe-k 292 (439)
T KOG0739|consen 231 IDEIDSLCGSRSE-NE----------SEASRRIKTEFLVQMQGVGN-DNDGVLVLGATNIPW-----VLDSAIRRRFE-K 292 (439)
T ss_pred eehhhhhccCCCC-Cc----------hHHHHHHHHHHHHhhhcccc-CCCceEEEecCCCch-----hHHHHHHHHhh-c
Confidence 9999988887631 21 24554443333111111111 123488899874321 23445556654 3
Q ss_pred eeecCCCC
Q 003070 248 AVSIPSGG 255 (850)
Q Consensus 248 ~V~Vps~~ 255 (850)
.+.||=|.
T Consensus 293 RIYIPLPe 300 (439)
T KOG0739|consen 293 RIYIPLPE 300 (439)
T ss_pred ceeccCCc
Confidence 45565444
No 430
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.77 E-value=0.6 Score=51.02 Aligned_cols=97 Identities=22% Similarity=0.260 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCch-----h----hHH
Q 003070 490 FDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-----E----MLM 560 (850)
Q Consensus 490 ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~-----~----~l~ 560 (850)
++||.-|++..+.-+ .|.|-.|+.|..|+||+.+++ ||-++.+ -.++.+.++. +|- + .+.
T Consensus 14 ~~ai~hi~ri~RvL~--~~~Gh~LLvG~~GsGr~sl~r-Laa~i~~--~~~~~i~~~~------~y~~~~f~~dLk~~~~ 82 (268)
T PF12780_consen 14 DEAIEHIARISRVLS--QPRGHALLVGVGGSGRQSLAR-LAAFICG--YEVFQIEITK------GYSIKDFKEDLKKALQ 82 (268)
T ss_dssp HHHHHHHHHHHHHHC--STTEEEEEECTTTSCHHHHHH-HHHHHTT--EEEE-TTTST------TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc--CCCCCeEEecCCCccHHHHHH-HHHHHhc--cceEEEEeeC------CcCHHHHHHHHHHHHH
Confidence 577777777766554 467999999999999999998 7767754 5566777654 221 1 122
Q ss_pred HHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccC
Q 003070 561 GTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG 597 (850)
Q Consensus 561 e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~ 597 (850)
.+--++...|+||+|-.-.+..+...+-..+-+|.+.
T Consensus 83 ~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip 119 (268)
T PF12780_consen 83 KAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIP 119 (268)
T ss_dssp HHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-T
T ss_pred HHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCC
Confidence 2323455568899998878888888888888888864
No 431
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.72 E-value=0.26 Score=52.64 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=25.0
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEec
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHID 544 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id 544 (850)
++|.|++|+|||++|++||+.+-...-..+.++
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~ 34 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILG 34 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEc
Confidence 579999999999999999998743223344444
No 432
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.69 E-value=0.079 Score=50.83 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.1
Q ss_pred EEEecCCchHHHHHHHHHHHHhc
Q 003070 512 FLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
+++.||+|+|||++|+.|++.+-
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 68999999999999999998873
No 433
>PHA02244 ATPase-like protein
Probab=92.66 E-value=0.26 Score=56.12 Aligned_cols=37 Identities=5% Similarity=-0.021 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhH
Q 003070 73 EDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRV 111 (850)
Q Consensus 73 eeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI 111 (850)
...+++..++.. ..+.+|+|++|+|||.+++.++..+
T Consensus 107 ~~~~ri~r~l~~--~~PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 107 YETADIAKIVNA--NIPVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred HHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 445566666553 6688888999999999999999874
No 434
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.66 E-value=0.14 Score=56.12 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=61.9
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCC-CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHH
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAK-KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGT 562 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk-~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~ 562 (850)
+-.+||-.|-.+-.=.+...|.|| ..-.+|+.|++|+|||.+|..+|+.| |....|..|--||--.-..+-.+.||.|
T Consensus 40 ~GmVGQ~~AR~Aagvi~kmi~egkiaGraiLiaG~pgtGKtAiAmg~sksL-G~~tpF~~i~gSEI~SlEmsKTEAltQA 118 (454)
T KOG2680|consen 40 EGMVGQVKARKAAGVILKMIREGKIAGRAILIAGQPGTGKTAIAMGMSKSL-GDDTPFTSISGSEIYSLEMSKTEALTQA 118 (454)
T ss_pred ccchhhHHHHHHhHHHHHHHHcCcccceEEEEecCCCCCceeeeeehhhhh-CCCCceeeeecceeeeecccHHHHHHHH
Confidence 456899888877777777788887 56788999999999999999999998 7778888887776211001123578888
Q ss_pred hhhC
Q 003070 563 LKNY 566 (850)
Q Consensus 563 vr~~ 566 (850)
+|+.
T Consensus 119 fRks 122 (454)
T KOG2680|consen 119 FRKS 122 (454)
T ss_pred HHHh
Confidence 7764
No 435
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.58 E-value=0.45 Score=56.81 Aligned_cols=43 Identities=5% Similarity=0.031 Sum_probs=32.6
Q ss_pred CcHHHHHHHHHHHhcCCCCCe-EEEcCCCchHHHHHHHHHHhHH
Q 003070 70 VSKEDIKLVFEVFLRKKRRNT-VIVGDCLSITDALVFDFMGRVE 112 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~NP-VLVGe~gvgktAvVegla~rI~ 112 (850)
|-+.-++.+...+..++-.+. ++.|++|+|||.+++.||+.+.
T Consensus 20 Gq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 20 GQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred CcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 555556656666665555565 7889999999999999999884
No 436
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.54 E-value=0.52 Score=47.68 Aligned_cols=97 Identities=20% Similarity=0.130 Sum_probs=60.7
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecC---cccc--------------CCC---CC----------ch-
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDM---RKRN--------------DGV---SS----------HS- 556 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idm---s~~~--------------~~~---~~----------~~- 556 (850)
+...+.+.||.|+|||+|.+.|+-.+--..-. |.+|- +... ..+ ++ +.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~-i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~ 103 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEPDSGS-ILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSG 103 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceE-EEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCH
Confidence 34566799999999999999999765322222 33321 1100 000 00 11
Q ss_pred h-----hHHHHhhhCCCEEEeecccccc-CHHHHHHHHhhhccCccC-ceEEEEecC
Q 003070 557 E-----MLMGTLKNYEKLVVLVEDIDLA-DPQFIKILADGFETENFG-KVIFVLTKG 606 (850)
Q Consensus 557 ~-----~l~e~vr~~P~sVvlldeiekA-~~~v~~~l~q~~d~G~l~-n~Iii~Tsn 606 (850)
| .|+-++-.+|. +++|||--.+ |+..+..|.+.+..=+=. +..||++|.
T Consensus 104 G~~qr~~la~al~~~p~-llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 159 (178)
T cd03229 104 GQQQRVALARALAMDPD-VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH 159 (178)
T ss_pred HHHHHHHHHHHHHCCCC-EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 1 47888999995 9999998865 788888888877753222 345555554
No 437
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=92.49 E-value=0.59 Score=53.09 Aligned_cols=111 Identities=14% Similarity=0.239 Sum_probs=69.3
Q ss_pred CchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc-----c-cC-----------
Q 003070 488 WQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK-----R-ND----------- 550 (850)
Q Consensus 488 gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~-----~-~~----------- 550 (850)
-|.++...|.+++.. +...-+++.||-|+|||.+.++|...+=......+..-.+- . +.
T Consensus 5 eQ~~~~~~v~~~~~~----~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~ 80 (364)
T PF05970_consen 5 EQRRVFDTVIEAIEN----EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPI 80 (364)
T ss_pred HHHHHHHHHHHHHHc----cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccc
Confidence 378888888887764 23346678999999999999999988855444444332110 0 00
Q ss_pred --CCCCch-----hhHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhc----c----CccCceEEEEe
Q 003070 551 --GVSSHS-----EMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFE----T----ENFGKVIFVLT 604 (850)
Q Consensus 551 --~~~~~~-----~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d----~----G~l~n~Iii~T 604 (850)
.+.... ..+.+.++. -.||++|||-..+..++..+-+.+. + --|....+||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~--~~~lIiDEism~~~~~l~~i~~~lr~i~~~~~~~~pFGG~~vil~ 147 (364)
T PF05970_consen 81 NNNEKSQCKISKNSRLRERLRK--ADVLIIDEISMVSADMLDAIDRRLRDIRKSKDSDKPFGGKQVILF 147 (364)
T ss_pred cccccccccccccchhhhhhhh--heeeecccccchhHHHHHHHHHhhhhhhcccchhhhcCcceEEee
Confidence 000000 122222222 2699999999999999987755443 2 23777777773
No 438
>PRK08118 topology modulation protein; Reviewed
Probab=92.48 E-value=0.11 Score=52.43 Aligned_cols=30 Identities=30% Similarity=0.476 Sum_probs=24.5
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEec
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHID 544 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id 544 (850)
+++.||.|+|||++|+.||+.+ .-.++.+|
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l---~~~~~~lD 33 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKL---NIPVHHLD 33 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCceecc
Confidence 5789999999999999999987 24445555
No 439
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.47 E-value=0.62 Score=56.58 Aligned_cols=44 Identities=2% Similarity=-0.009 Sum_probs=34.6
Q ss_pred CcHHHHHHHHHHHhcCCCCCe-EEEcCCCchHHHHHHHHHHhHHh
Q 003070 70 VSKEDIKLVFEVFLRKKRRNT-VIVGDCLSITDALVFDFMGRVER 113 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~NP-VLVGe~gvgktAvVegla~rI~~ 113 (850)
|-+.-++.+...+..++-.+. ++.|.+|+|||.++.-||+.+.-
T Consensus 20 GQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 20 GQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 656666667777776666666 78899999999999999998863
No 440
>PRK06526 transposase; Provisional
Probab=92.45 E-value=0.096 Score=56.67 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=24.9
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHh
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVER 113 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~ 113 (850)
.+.|.+|+|.||+|||-++.+++....+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 5789999999999999999999887664
No 441
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=92.42 E-value=0.36 Score=53.30 Aligned_cols=77 Identities=14% Similarity=0.210 Sum_probs=46.8
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc-ccC-----CCCCchhhHHHHhhhCCCEEEeeccccccC-----
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK-RND-----GVSSHSEMLMGTLKNYEKLVVLVEDIDLAD----- 580 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~-~~~-----~~~~~~~~l~e~vr~~P~sVvlldeiekA~----- 580 (850)
++++||||+|||.||..||+.+- ..+|+.|... |.+ +.|+ .+....-||-.|=+-+.....
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~---~~iis~Ds~qvY~~l~IgTakp~-----~~e~~~v~hhlid~~~~~~~~~v~~f 73 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLN---AEIISVDSMQIYKGMDIGTAKPS-----LQEREGIPHHLIDILDPSESYSAADF 73 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCC---CcEEEechhheeeeccccCCCCC-----HHHHcCccEEEEEEechhheEcHHHH
Confidence 57899999999999999999872 3578888544 321 1111 134567777444333443322
Q ss_pred -HHHHHHHHhhhccCcc
Q 003070 581 -PQFIKILADGFETENF 596 (850)
Q Consensus 581 -~~v~~~l~q~~d~G~l 596 (850)
.+..+.+.++++.|++
T Consensus 74 ~~~a~~~i~~~~~~g~~ 90 (287)
T TIGR00174 74 QTLALNAIADITARGKI 90 (287)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 2344445555566653
No 442
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=92.42 E-value=0.6 Score=56.79 Aligned_cols=61 Identities=5% Similarity=-0.070 Sum_probs=42.2
Q ss_pred CcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeec
Q 003070 70 VSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHF 130 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl 130 (850)
|++.-++++++-+....-.+.+|+|++|+|||.+++.+......-.....-.+..++.++-
T Consensus 158 Gqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~ 218 (615)
T TIGR02903 158 GQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDG 218 (615)
T ss_pred eCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEec
Confidence 7888888888877765666789999999999999988876553221111112456777663
No 443
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=92.37 E-value=0.1 Score=57.86 Aligned_cols=114 Identities=14% Similarity=0.113 Sum_probs=73.5
Q ss_pred CCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC---ceEEecCccccCCCCCchh---hH
Q 003070 486 VPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD---LLFHIDMRKRNDGVSSHSE---ML 559 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~---~~i~idms~~~~~~~~~~~---~l 559 (850)
|++|++.+..+-+-+-. -+.| .+||-||+|.|||....+.|..+++... .+.-++.| ++.+.+.+- ++
T Consensus 43 v~~~~ei~st~~~~~~~--~~lP--h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaS--d~rgid~vr~qi~~ 116 (360)
T KOG0990|consen 43 VIKQEPIWSTENRYSGM--PGLP--HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNAS--DDRGIDPVRQQIHL 116 (360)
T ss_pred HhcCCchhhHHHHhccC--CCCC--cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhcc--CccCCcchHHHHHH
Confidence 46777776666554111 1134 8999999999999999999999998421 12222222 223333222 12
Q ss_pred HHHhh-------hCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 560 MGTLK-------NYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 560 ~e~vr-------~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
-.-.+ ..++-.|+|||-|---.+-||.|.+++++=. .|+=|++-+|
T Consensus 117 fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t-~n~rF~ii~n 169 (360)
T KOG0990|consen 117 FASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYT-ANTRFATISN 169 (360)
T ss_pred HHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhc-cceEEEEecc
Confidence 22222 2378899999999999999999999665522 2666666677
No 444
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=92.36 E-value=0.23 Score=50.04 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=34.0
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR 548 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~ 548 (850)
..+.|+|..|+|||+||++|.+.||......+.+|+...
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l 41 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL 41 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence 346689999999999999999999999999999998764
No 445
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.31 E-value=0.3 Score=51.90 Aligned_cols=98 Identities=17% Similarity=0.220 Sum_probs=53.6
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcccc------------------CC--------CCC--------
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRN------------------DG--------VSS-------- 554 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~------------------~~--------~~~-------- 554 (850)
...+++.||+|+|||.+|..++.-+-......+.++..+.- .. .|.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 103 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEKR 103 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHHH
Confidence 45788999999999999866554332233455555432210 00 000
Q ss_pred -chhhHHHHhhhCCCEEEeecccccc-----CHHHHHHHHhhhccCccCceEEEEecC
Q 003070 555 -HSEMLMGTLKNYEKLVVLVEDIDLA-----DPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 555 -~~~~l~e~vr~~P~sVvlldeiekA-----~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
++..+.+++......++++|++--. ++..+..|.+.+..=+-.++++|+|++
T Consensus 104 ~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~ 161 (230)
T PRK08533 104 KFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTAN 161 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 1113444454445679999998753 444334444444321112456677777
No 446
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.29 E-value=0.59 Score=56.47 Aligned_cols=80 Identities=14% Similarity=0.087 Sum_probs=46.3
Q ss_pred CCCeEE-EcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeE
Q 003070 87 RRNTVI-VGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAI 165 (850)
Q Consensus 87 K~NPVL-VGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvI 165 (850)
.-||++ .|.+|+|||-++..++..+.+. -.+.+|+.+....+. ..+...-.+..+.++.+.+++ -=+
T Consensus 313 ~~NpL~LyG~sGsGKTHLL~AIa~~a~~~-----~~g~~V~Yitaeef~-~el~~al~~~~~~~f~~~y~~------~DL 380 (617)
T PRK14086 313 AYNPLFIYGESGLGKTHLLHAIGHYARRL-----YPGTRVRYVSSEEFT-NEFINSIRDGKGDSFRRRYRE------MDI 380 (617)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHHh-----CCCCeEEEeeHHHHH-HHHHHHHHhccHHHHHHHhhc------CCE
Confidence 347665 5999999999999999887653 135677776644221 000000001112223333333 257
Q ss_pred EEecchhhhhcCC
Q 003070 166 IYTGDLKWTVDQQ 178 (850)
Q Consensus 166 LfIdELh~lvgag 178 (850)
|+||||+.+.+..
T Consensus 381 LlIDDIq~l~gke 393 (617)
T PRK14086 381 LLVDDIQFLEDKE 393 (617)
T ss_pred EEEehhccccCCH
Confidence 9999999886643
No 447
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.20 E-value=0.83 Score=54.74 Aligned_cols=98 Identities=11% Similarity=0.058 Sum_probs=58.0
Q ss_pred CcHHHHHHHHHHHhcCCCCC-eEEEcCCCchHHHHHHHHHHhHHhCC----CCc----------ccCCcEEEEeeccccc
Q 003070 70 VSKEDIKLVFEVFLRKKRRN-TVIVGDCLSITDALVFDFMGRVERGD----VPQ----------ELKQTHVIKFHFAPVT 134 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~N-PVLVGe~gvgktAvVegla~rI~~G~----VP~----------~Lkg~~visLdl~~l~ 134 (850)
|-+.-++.+...+..++-.+ -++.|++|+|||.++..+|+.+.... -|. .-.-..++.+|-+.
T Consensus 20 Gq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas-- 97 (546)
T PRK14957 20 GQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAAS-- 97 (546)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeeccc--
Confidence 66676777777776555555 36789999999999999999876421 110 00112344444221
Q ss_pred ccccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhh
Q 003070 135 LRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175 (850)
Q Consensus 135 ~~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lv 175 (850)
...-+++ +++++.+...-..++.-|++|||+|.+-
T Consensus 98 --~~gvd~i----r~ii~~~~~~p~~g~~kViIIDEa~~ls 132 (546)
T PRK14957 98 --RTGVEET----KEILDNIQYMPSQGRYKVYLIDEVHMLS 132 (546)
T ss_pred --ccCHHHH----HHHHHHHHhhhhcCCcEEEEEechhhcc
Confidence 1122333 4444444432123567899999998873
No 448
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.18 E-value=0.45 Score=55.80 Aligned_cols=99 Identities=12% Similarity=0.129 Sum_probs=62.2
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcccc-------C-----------CCCCchhhHHHHhhhCCCE
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRN-------D-----------GVSSHSEMLMGTLKNYEKL 569 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~-------~-----------~~~~~~~~l~e~vr~~P~s 569 (850)
+...+++.|++|+|||.|+..+|..+-......+.++.-+.- . -...-.+.|.+++.+..+.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~ 172 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENPQ 172 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCc
Confidence 457888999999999999999987665443456666543210 0 0112345788888887888
Q ss_pred EEeeccccccC-----------HHHHHHHHhhhccCccCceEEEEecC
Q 003070 570 VVLVEDIDLAD-----------PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 570 VvlldeiekA~-----------~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+|++|.|--.. .++...+.+.+.--+-.|+.+|||+.
T Consensus 173 ~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~h 220 (454)
T TIGR00416 173 ACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGH 220 (454)
T ss_pred EEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 99999885321 13444433333322334777777754
No 449
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.17 E-value=0.49 Score=49.96 Aligned_cols=94 Identities=11% Similarity=0.138 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCCCC--Ce-EEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHH
Q 003070 72 KEDIKLVFEVFLRKKRR--NT-VIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLT 148 (850)
Q Consensus 72 deeirrVieIL~Rr~K~--NP-VLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rlk 148 (850)
++.+...++-++...+. || +|-|++|+|||-++.+++..+.+. -.+.+|+.++...+.-..+ ..--+..+.
T Consensus 16 N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~-----~~~~~v~y~~~~~f~~~~~-~~~~~~~~~ 89 (219)
T PF00308_consen 16 NELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ-----HPGKRVVYLSAEEFIREFA-DALRDGEIE 89 (219)
T ss_dssp THHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH-----CTTS-EEEEEHHHHHHHHH-HHHHTTSHH
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc-----cccccceeecHHHHHHHHH-HHHHcccch
Confidence 56666677767665443 77 455999999999999999988752 1356788876432110000 000001223
Q ss_pred HHHHHHhccccCCCCeEEEecchhhhhcC
Q 003070 149 ELKRKVDSLTSVGGGAIIYTGDLKWTVDQ 177 (850)
Q Consensus 149 eL~~~V~~~~~~~~gvILfIdELh~lvga 177 (850)
++++.+++ -=+|+|||+|.+-+.
T Consensus 90 ~~~~~~~~------~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 90 EFKDRLRS------ADLLIIDDIQFLAGK 112 (219)
T ss_dssp HHHHHHCT------SSEEEEETGGGGTTH
T ss_pred hhhhhhhc------CCEEEEecchhhcCc
Confidence 34444443 478999999998653
No 450
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.14 E-value=0.56 Score=53.84 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=45.3
Q ss_pred CCe-EEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHH-HHHHHHHHHHHhccccCCCCeE
Q 003070 88 RNT-VIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEV-EMNLTELKRKVDSLTSVGGGAI 165 (850)
Q Consensus 88 ~NP-VLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~Rgef-E~RlkeL~~~V~~~~~~~~gvI 165 (850)
-|| +|.|.+|+|||-++..++..+.+.. .+.+|+.+....+. ......+ ...+.++.+.+++ .-+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~-----~~~~v~yi~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~dl 202 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENN-----PNAKVVYVSSEKFT--NDFVNALRNNKMEEFKEKYRS------VDL 202 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhC-----CCCcEEEEEHHHHH--HHHHHHHHcCCHHHHHHHHHh------CCE
Confidence 467 5899999999999999999887641 24666666533210 0000000 0012223333332 238
Q ss_pred EEecchhhhhcC
Q 003070 166 IYTGDLKWTVDQ 177 (850)
Q Consensus 166 LfIdELh~lvga 177 (850)
|+|||+|.+.+.
T Consensus 203 LiiDDi~~l~~~ 214 (405)
T TIGR00362 203 LLIDDIQFLAGK 214 (405)
T ss_pred EEEehhhhhcCC
Confidence 999999998653
No 451
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=92.13 E-value=0.47 Score=52.38 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=63.3
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEec--Ccc------------------ccC--------------CCC
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID--MRK------------------RND--------------GVS 553 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id--ms~------------------~~~--------------~~~ 553 (850)
+..-+.|+||.|+|||+|-+.|+-++--+.-.+--.+ ... |.. ..+
T Consensus 30 ~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~ 109 (293)
T COG1131 30 PGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS 109 (293)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC
Confidence 4568899999999999999999998875444322221 110 000 000
Q ss_pred --------------------------Cchh------hHHHHhhhCCCEEEeecccccc-CHHHHHHHHhhhccCccC-ce
Q 003070 554 --------------------------SHSE------MLMGTLKNYEKLVVLVEDIDLA-DPQFIKILADGFETENFG-KV 599 (850)
Q Consensus 554 --------------------------~~~~------~l~e~vr~~P~sVvlldeiekA-~~~v~~~l~q~~d~G~l~-n~ 599 (850)
+|.+ .|+.|+-.+| .|++|||---. ||.....+.+.|.+=.-. ++
T Consensus 110 ~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P-~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~ 188 (293)
T COG1131 110 KEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDP-ELLILDEPTSGLDPESRREIWELLRELAKEGGV 188 (293)
T ss_pred hhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCC-CEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCc
Confidence 1111 4888999999 79999998743 666666666655543332 36
Q ss_pred EEEEecCC
Q 003070 600 IFVLTKGD 607 (850)
Q Consensus 600 Iii~Tsn~ 607 (850)
+|++||--
T Consensus 189 tvlissH~ 196 (293)
T COG1131 189 TILLSTHI 196 (293)
T ss_pred EEEEeCCc
Confidence 77777763
No 452
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.09 E-value=0.28 Score=56.33 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=56.9
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeE
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAI 165 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvI 165 (850)
.|.|.+|+|++|+|||=++.-||+-+ +||-.+-++ ..|.-+|---+++|-=|..|+....=-......=|
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~l---dVPfaIcDc-------TtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGI 294 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVL---DVPFAICDC-------TTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGI 294 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHh---CCCeEEecc-------cchhhcccccccHHHHHHHHHHHccCCHHHHhcCe
Confidence 59999999999999999998888765 577544433 33433444488999999988876431111122458
Q ss_pred EEecchhhhh
Q 003070 166 IYTGDLKWTV 175 (850)
Q Consensus 166 LfIdELh~lv 175 (850)
+||||+.-|.
T Consensus 295 VflDEvDKi~ 304 (564)
T KOG0745|consen 295 VFLDEVDKIT 304 (564)
T ss_pred EEEehhhhhc
Confidence 9999999886
No 453
>PRK08233 hypothetical protein; Provisional
Probab=92.08 E-value=0.15 Score=50.98 Aligned_cols=36 Identities=11% Similarity=0.070 Sum_probs=27.9
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
.-+.+.|++|+|||++|+.||+.+-+ ..++.+|.-.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~--~~~~~~d~~~ 39 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKN--SKALYFDRYD 39 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCC--CceEEECCEE
Confidence 34678999999999999999998732 3667777553
No 454
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.07 E-value=0.53 Score=57.14 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=25.2
Q ss_pred CCEEEeeccccccCHHHHHHHHhhhccC
Q 003070 567 EKLVVLVEDIDLADPQFIKILADGFETE 594 (850)
Q Consensus 567 P~sVvlldeiekA~~~v~~~l~q~~d~G 594 (850)
|+.||++||.-..|-..+..|++++..+
T Consensus 265 ~~dvlIvDEaSMvd~~lm~~ll~al~~~ 292 (615)
T PRK10875 265 HLDVLVVDEASMVDLPMMARLIDALPPH 292 (615)
T ss_pred CCCeEEEChHhcccHHHHHHHHHhcccC
Confidence 4589999999999999999999998765
No 455
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=92.06 E-value=0.11 Score=53.21 Aligned_cols=30 Identities=33% Similarity=0.438 Sum_probs=25.6
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
++++||+|+||+++|+.||+. | .+.++|..
T Consensus 3 iiilG~pGaGK~T~A~~La~~-~----~i~hlstg 32 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKK-L----GLPHLDTG 32 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHH-h----CCcEEcHh
Confidence 689999999999999999999 4 46777744
No 456
>PF13479 AAA_24: AAA domain
Probab=92.06 E-value=0.32 Score=50.95 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=46.2
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccc-----cCC----CCCchhhHHHHh-----hhCCCEEEeec
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR-----NDG----VSSHSEMLMGTL-----KNYEKLVVLVE 574 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~-----~~~----~~~~~~~l~e~v-----r~~P~sVvlld 574 (850)
-.-+++.|++|+|||.+|+.+ ...-+|.+|-+.. ... ..+ .+.+.+++ ..++|.+|++|
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~------~k~l~id~E~g~~~~~~~~~~~~i~i~s-~~~~~~~~~~l~~~~~~y~tiVID 75 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL------PKPLFIDTENGSDSLKFLDDGDVIPITS-WEDFLEALDELEEDEADYDTIVID 75 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC------CCeEEEEeCCCccchhhhcCCCeeCcCC-HHHHHHHHHHHHhccCCCCEEEEE
Confidence 356889999999999999888 2222344433310 010 111 12333332 35799999999
Q ss_pred cccccCHHHHHHHH
Q 003070 575 DIDLADPQFIKILA 588 (850)
Q Consensus 575 eiekA~~~v~~~l~ 588 (850)
.|+++-..+..-++
T Consensus 76 sis~~~~~~~~~~~ 89 (213)
T PF13479_consen 76 SISWLEDMCLEYIC 89 (213)
T ss_pred CHHHHHHHHHHHHh
Confidence 99998777766666
No 457
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=92.05 E-value=0.044 Score=61.43 Aligned_cols=92 Identities=12% Similarity=0.125 Sum_probs=54.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccc-----------cCCCCCch---hhHHHHhhhCCCEEEe
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR-----------NDGVSSHS---EMLMGTLKNYEKLVVL 572 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~-----------~~~~~~~~---~~l~e~vr~~P~sVvl 572 (850)
|...-+||.|.+|+||+.|-+..+.+. ..-++.....- ++...+++ |.| |..+ .-|+.
T Consensus 55 r~~ihiLlvGdpg~gKS~ll~~~~~~~----pr~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGal---vlad-~Gicc 126 (331)
T PF00493_consen 55 RGNIHILLVGDPGTGKSQLLKYVAKLA----PRSVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGAL---VLAD-GGICC 126 (331)
T ss_dssp --S--EEEECSCHHCHHHHHHCCCCT-----SSEEEEECCGSTCCCCCEEECCCGGTSSECEEE-HH---HHCT-TSEEE
T ss_pred ccccceeeccchhhhHHHHHHHHHhhC----CceEEECCCCcccCCccceeccccccceeEEeCCch---hccc-Cceee
Confidence 456789999999999999998776554 22233332211 11111111 222 2223 36999
Q ss_pred eccccccCHHHHHHHHhhhccCccC------------ceEEEEecC
Q 003070 573 VEDIDLADPQFIKILADGFETENFG------------KVIFVLTKG 606 (850)
Q Consensus 573 ldeiekA~~~v~~~l~q~~d~G~l~------------n~Iii~Tsn 606 (850)
+||+||.+.+.+..|+++||.|.+. +|-|+.++|
T Consensus 127 IDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~N 172 (331)
T PF00493_consen 127 IDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAAN 172 (331)
T ss_dssp ECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE-
T ss_pred ecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHh
Confidence 9999999999999999999999973 566666666
No 458
>PRK14527 adenylate kinase; Provisional
Probab=92.04 E-value=0.37 Score=49.30 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.4
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.-++|.||+|+|||++|+.||+.+
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999876
No 459
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.04 E-value=0.66 Score=50.35 Aligned_cols=141 Identities=13% Similarity=0.083 Sum_probs=92.6
Q ss_pred CcHHHHHHHHHHHhc-------------CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeeccccccc
Q 003070 70 VSKEDIKLVFEVFLR-------------KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLR 136 (850)
Q Consensus 70 gRdeeirrVieIL~R-------------r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~ 136 (850)
|..|+|.++-||..- .--+-.+|-|.||.|||-.++.+|.|- ++.||..==+.| -
T Consensus 181 gckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt----------dacfirvigsel--v 248 (435)
T KOG0729|consen 181 GCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT----------DACFIRVIGSEL--V 248 (435)
T ss_pred chHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc----------CceEEeehhHHH--H
Confidence 788888888777531 124567899999999999998888773 345555411111 1
Q ss_pred ccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCC
Q 003070 137 FMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASS 216 (850)
Q Consensus 137 ~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~ar 216 (850)
-.+=||-..-+.+|....+. ....|+|+|||..+=|+.--.|. || .+-+.....|+-|-|..+- .|
T Consensus 249 qkyvgegarmvrelf~mart----kkaciiffdeidaiggarfddg~----gg----dnevqrtmleli~qldgfd--pr 314 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMART----KKACIIFFDEIDAIGGARFDDGA----GG----DNEVQRTMLELINQLDGFD--PR 314 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcc----cceEEEEeeccccccCccccCCC----CC----cHHHHHHHHHHHHhccCCC--CC
Confidence 22345555555666666654 66899999999998776532221 11 2356666678888887765 79
Q ss_pred CeEEEEeccc-HHHHHhhhhcCCcccc
Q 003070 217 TRVWLMATAS-YQTYMKCQMRQPPLEI 242 (850)
Q Consensus 217 G~lwlIGatT-~eeY~K~iekdPaLEr 242 (850)
|.|.++=||. .+| .||||-|
T Consensus 315 gnikvlmatnrpdt------ldpallr 335 (435)
T KOG0729|consen 315 GNIKVLMATNRPDT------LDPALLR 335 (435)
T ss_pred CCeEEEeecCCCCC------cCHhhcC
Confidence 9999887763 332 4677766
No 460
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.02 E-value=0.88 Score=50.72 Aligned_cols=47 Identities=4% Similarity=-0.038 Sum_probs=37.5
Q ss_pred CCcHHHHHHHHHHHhcCCCCC-eEEEcCCCchHHHHHHHHHHhHHhCC
Q 003070 69 SVSKEDIKLVFEVFLRKKRRN-TVIVGDCLSITDALVFDFMGRVERGD 115 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~N-PVLVGe~gvgktAvVegla~rI~~G~ 115 (850)
.|.++.++.+.+.+.+++-.+ -+|.|++|+|||.+++.+++.+...+
T Consensus 17 ig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~ 64 (355)
T TIGR02397 17 IGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQN 64 (355)
T ss_pred cCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 378888888888887655444 46789999999999999999987543
No 461
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=91.93 E-value=0.67 Score=47.32 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=59.6
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEE---ecC-ccc---c--------------------CCCCCchh-----
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFH---IDM-RKR---N--------------------DGVSSHSE----- 557 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~---idm-s~~---~--------------------~~~~~~~~----- 557 (850)
.+.++.||+|+|||.+-.||.-.++|.....-+ +++ ..+ . +..+-+.+
T Consensus 23 ~~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~LS~Ge~~r 102 (178)
T cd03239 23 SFNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQILSGGEKSL 102 (178)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCcccCCHHHHHH
Confidence 389999999999999999999998886443211 111 110 0 00000111
Q ss_pred -hHHHHhh----hCCCEEEeeccccc-cCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 558 -MLMGTLK----NYEKLVVLVEDIDL-ADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 558 -~l~e~vr----~~P~sVvlldeiek-A~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.|+.++. .+| .+++|||..- .|+.....+.+.+.+=.=.++.||++|..
T Consensus 103 ~~Laral~~~~~~~p-~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 103 SALALIFALQEIKPS-PFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred HHHHHHHHHhcCCCC-CEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 4666654 345 6999999995 57777777777776422123556666653
No 462
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.89 E-value=0.27 Score=54.26 Aligned_cols=87 Identities=18% Similarity=0.266 Sum_probs=64.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCC-CCceEEe-cCccc-cCC-------------CCCchhhHHHHhhhCCCEE
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGS-TDLLFHI-DMRKR-NDG-------------VSSHSEMLMGTLKNYEKLV 570 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs-~~~~i~i-dms~~-~~~-------------~~~~~~~l~e~vr~~P~sV 570 (850)
.+.|-.|..||||+||++.-.++-.++=-. ..+++.| |.=|| ..+ -.+|..-|-.|+|+.|- |
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPD-V 201 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPD-V 201 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCC-E
Confidence 467899999999999998887777666322 3344554 44444 111 12355579999999997 9
Q ss_pred EeeccccccCHHHHHHHHhhhccCcc
Q 003070 571 VLVEDIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 571 vlldeiekA~~~v~~~l~q~~d~G~l 596 (850)
||+=|+ =|.+-...=+.|-|+|+|
T Consensus 202 IlvGEm--RD~ETi~~ALtAAETGHL 225 (353)
T COG2805 202 ILVGEM--RDLETIRLALTAAETGHL 225 (353)
T ss_pred EEEecc--ccHHHHHHHHHHHhcCCE
Confidence 999876 478888899999999998
No 463
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=91.85 E-value=0.81 Score=47.03 Aligned_cols=98 Identities=12% Similarity=0.045 Sum_probs=61.8
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHh--cCCCCceEEecCcc-----------c---cCC-CC---------------Cc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESV--FGSTDLLFHIDMRK-----------R---NDG-VS---------------SH 555 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~l--fgs~~~~i~idms~-----------~---~~~-~~---------------~~ 555 (850)
+.-.+.+.||.|+|||+|.+.||-++ --.. --|.+|-.. | +.. .+ .+
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~-G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~L 112 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRRTGLGVS-GEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCCc-eEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhccC
Confidence 44567799999999999999999877 2111 112232100 0 000 00 11
Q ss_pred hh------hHHHHhhhCCCEEEeecccccc-CHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 556 SE------MLMGTLKNYEKLVVLVEDIDLA-DPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 556 ~~------~l~e~vr~~P~sVvlldeiekA-~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.+ .|+.++-.+|. |+||||---+ |+..+..+++.|.+-+-++..+|++|..
T Consensus 113 S~G~~qrv~laral~~~p~-illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~ 170 (194)
T cd03213 113 SGGERKRVSIALELVSNPS-LLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQ 170 (194)
T ss_pred CHHHHHHHHHHHHHHcCCC-EEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 21 47888899995 9999998854 7888888888887633224455555543
No 464
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=91.84 E-value=0.48 Score=53.20 Aligned_cols=50 Identities=14% Similarity=0.105 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccc
Q 003070 76 KLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPV 133 (850)
Q Consensus 76 rrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l 133 (850)
++-++-++ ++..+.+|.||+|+||+.+++.+-..-.+ ++..++.+|-+.+
T Consensus 12 ~~~~~~~a-~~~~pVLI~GE~GtGK~~lAr~iH~~s~r-------~~~pfv~vnc~~~ 61 (329)
T TIGR02974 12 LEQVSRLA-PLDRPVLIIGERGTGKELIAARLHYLSKR-------WQGPLVKLNCAAL 61 (329)
T ss_pred HHHHHHHh-CCCCCEEEECCCCChHHHHHHHHHHhcCc-------cCCCeEEEeCCCC
Confidence 33333344 35667889999999999888766543222 3456888876543
No 465
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.79 E-value=0.95 Score=47.59 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=19.9
Q ss_pred eEEEEecCCchHHHHHHHHHHHH
Q 003070 510 TWFLLQGNDTIGKRRLALSIAES 532 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~ 532 (850)
.-+++.||.|.|||.+.+.++..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHH
Confidence 45679999999999999999954
No 466
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=91.78 E-value=0.64 Score=55.86 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=68.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc---cc--------------c-----C--------------
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR---KR--------------N-----D-------------- 550 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms---~~--------------~-----~-------------- 550 (850)
++.....+.||+|+|||+|++.|+.++ -. +--|.+|-- ++ + .
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~-~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~ 451 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL-PY-QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDAS 451 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC-CC-CcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCC
Confidence 466788899999999999999999987 43 455666531 10 0 0
Q ss_pred -------------------CCCCc---h--------h------hHHHHhhhCCCEEEeecccccc-CHHHHHHHHhhhcc
Q 003070 551 -------------------GVSSH---S--------E------MLMGTLKNYEKLVVLVEDIDLA-DPQFIKILADGFET 593 (850)
Q Consensus 551 -------------------~~~~~---~--------~------~l~e~vr~~P~sVvlldeiekA-~~~v~~~l~q~~d~ 593 (850)
-|.|| + | .|+.|+-++|- |++|||.--| |++....+.+.+.+
T Consensus 452 ~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~-IliLDE~TSaLD~~te~~i~~~l~~ 530 (588)
T PRK11174 452 DEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQ-LLLLDEPTASLDAHSEQLVMQALNA 530 (588)
T ss_pred HHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCC-EEEEeCCccCCCHHHHHHHHHHHHH
Confidence 01222 1 1 48999999994 9999999865 88888888888865
Q ss_pred CccCceEEEEecC
Q 003070 594 ENFGKVIFVLTKG 606 (850)
Q Consensus 594 G~l~n~Iii~Tsn 606 (850)
-.=..|+|+.|-+
T Consensus 531 ~~~~~TvIiItHr 543 (588)
T PRK11174 531 ASRRQTTLMVTHQ 543 (588)
T ss_pred HhCCCEEEEEecC
Confidence 4223577777665
No 467
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=91.76 E-value=0.44 Score=53.34 Aligned_cols=57 Identities=14% Similarity=0.076 Sum_probs=37.5
Q ss_pred CcHHHHHHHHHHHhc--CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccc
Q 003070 70 VSKEDIKLVFEVFLR--KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPV 133 (850)
Q Consensus 70 gRdeeirrVieIL~R--r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l 133 (850)
|+...++++++-+.| ++.-+.+|+||+|+||+.+++.+-..-. -++..++.+|-+.+
T Consensus 10 G~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~-------r~~~pfv~v~c~~~ 68 (326)
T PRK11608 10 GEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSS-------RWQGPFISLNCAAL 68 (326)
T ss_pred ECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCC-------ccCCCeEEEeCCCC
Confidence 556666666666554 3455677779999999999876653211 13557888886643
No 468
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.73 E-value=0.27 Score=50.71 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=34.3
Q ss_pred hCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 505 SAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 505 ~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
-+.+...+.|.|++|+|||++|+.|+..+|......+.+|...
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~ 62 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDN 62 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEe
Confidence 3334467888999999999999999999987766677787543
No 469
>PRK13947 shikimate kinase; Provisional
Probab=91.71 E-value=0.18 Score=50.20 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=25.6
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEec
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID 544 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id 544 (850)
++++.|+.|+|||++|+.||+.+ .-.++..|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l---g~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL---SFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCEEECc
Confidence 67899999999999999999987 34455554
No 470
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=91.70 E-value=0.5 Score=58.52 Aligned_cols=98 Identities=12% Similarity=0.077 Sum_probs=60.8
Q ss_pred CCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCC--CceEEecCc--------cccC-CCCCc
Q 003070 487 PWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGST--DLLFHIDMR--------KRND-GVSSH 555 (850)
Q Consensus 487 ~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~--~~~i~idms--------~~~~-~~~~~ 555 (850)
.+|.+|+..+.. ...+++.|+.|+|||+++++|.+.+-... ..++-.-.+ +.-. ...++
T Consensus 326 ~~Q~~Ai~~~~~----------~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Ti 395 (720)
T TIGR01448 326 EEQKQALDTAIQ----------HKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTI 395 (720)
T ss_pred HHHHHHHHHHHh----------CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccH
Confidence 568888776531 23788999999999999999998775332 222212111 1000 00011
Q ss_pred hhhHH-------HHhhh--CCCEEEeeccccccCHHHHHHHHhhhccC
Q 003070 556 SEMLM-------GTLKN--YEKLVVLVEDIDLADPQFIKILADGFETE 594 (850)
Q Consensus 556 ~~~l~-------e~vr~--~P~sVvlldeiekA~~~v~~~l~q~~d~G 594 (850)
...|. ..-.+ .++.||++||.-..+...+..|++++..|
T Consensus 396 h~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~~~~ 443 (720)
T TIGR01448 396 HRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDTWLALSLLAALPDH 443 (720)
T ss_pred HHHhhccCCccchhhhhccccCCEEEEeccccCCHHHHHHHHHhCCCC
Confidence 11110 00112 35689999999999999999999988765
No 471
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.69 E-value=0.37 Score=49.73 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=32.7
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
..-.++.||+|+|||.+|..+|..+.......+.||..+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 456678999999999999999988777667888888754
No 472
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=91.65 E-value=0.18 Score=49.77 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=26.8
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEec
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHID 544 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id 544 (850)
++|.|++|+|||++|+.|+..++...-..+.+|
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 578999999999999999999974444455565
No 473
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=91.56 E-value=0.37 Score=53.45 Aligned_cols=34 Identities=21% Similarity=0.409 Sum_probs=27.5
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecC
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDM 545 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idm 545 (850)
..+++.|++|+|||.+|..||+.+ | ...+|+-|.
T Consensus 93 ~iIlI~G~sgsGKStlA~~La~~l-~-~~~vi~~D~ 126 (301)
T PRK04220 93 IIILIGGASGVGTSTIAFELASRL-G-IRSVIGTDS 126 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh-C-CCEEEechH
Confidence 568899999999999999999888 3 335666653
No 474
>PRK07667 uridine kinase; Provisional
Probab=91.54 E-value=0.37 Score=49.64 Aligned_cols=52 Identities=10% Similarity=0.192 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 494 HSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 494 ~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
..|+++|..++-.+ .-+.+.|++|+|||++|+.|++.+=........+++..
T Consensus 4 ~~~~~~~~~~~~~~--~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 4 NELINIMKKHKENR--FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred HHHHHHHHhcCCCC--EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 56677776665433 56678999999999999999998832223333444433
No 475
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=91.44 E-value=0.65 Score=47.98 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=19.2
Q ss_pred EEEEecCCchHHHHHHHHHHH
Q 003070 511 WFLLQGNDTIGKRRLALSIAE 531 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~ 531 (850)
-+++.||.|.|||++.+.|+.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 577999999999999999993
No 476
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=91.43 E-value=1.1 Score=46.36 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=21.1
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
+...+.||+|+|||.|.++|+-++
T Consensus 23 g~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 23 GLTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999999998554
No 477
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=91.41 E-value=0.64 Score=47.66 Aligned_cols=95 Identities=19% Similarity=0.245 Sum_probs=55.7
Q ss_pred EEEecCCchHHHHHHHHHHH-HhcCCCCc--eEEecCccc----cC------CCCCchh----------hHHHHh---hh
Q 003070 512 FLLQGNDTIGKRRLALSIAE-SVFGSTDL--LFHIDMRKR----ND------GVSSHSE----------MLMGTL---KN 565 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~-~lfgs~~~--~i~idms~~----~~------~~~~~~~----------~l~e~v---r~ 565 (850)
++|+|.+|+||+.+..+|.. ..|.+... -+.-+...+ .. .-||+.+ .+...+ ..
T Consensus 3 i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~ 82 (196)
T cd01852 3 LVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAP 82 (196)
T ss_pred EEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCC
Confidence 67999999999999998862 23322210 001111111 00 1244432 122222 35
Q ss_pred CCCEEEeeccccc---cCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 566 YEKLVVLVEDIDL---ADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 566 ~P~sVvlldeiek---A~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.|+.|||+-++.+ .+..+.+.|.+.|.+.-++++|||+|..
T Consensus 83 g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~ 126 (196)
T cd01852 83 GPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRG 126 (196)
T ss_pred CCEEEEEEEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECc
Confidence 7888888865554 4556666667777766678999999875
No 478
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=91.39 E-value=1.1 Score=56.28 Aligned_cols=43 Identities=2% Similarity=-0.123 Sum_probs=35.3
Q ss_pred CcHHHHHHHHHHHhcCCCCCe-EEEcCCCchHHHHHHHHHHhHH
Q 003070 70 VSKEDIKLVFEVFLRKKRRNT-VIVGDCLSITDALVFDFMGRVE 112 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~NP-VLVGe~gvgktAvVegla~rI~ 112 (850)
|.+.-++.+...|...+.++. +|.|.+|+|||.++.-||+.+.
T Consensus 19 Gqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 19 GQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred CcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 666667777777776677775 6889999999999999999986
No 479
>PRK09183 transposase/IS protein; Provisional
Probab=91.37 E-value=0.29 Score=53.08 Aligned_cols=77 Identities=10% Similarity=0.047 Sum_probs=43.9
Q ss_pred CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCe
Q 003070 85 KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGA 164 (850)
Q Consensus 85 r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gv 164 (850)
....|.+|+|++|+|||-++..++..... +|.+|.-+....+ +........+.++..+....- ...-
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~-------~G~~v~~~~~~~l-~~~l~~a~~~~~~~~~~~~~~-----~~~d 166 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVR-------AGIKVRFTTAADL-LLQLSTAQRQGRYKTTLQRGV-----MAPR 166 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHH-------cCCeEEEEeHHHH-HHHHHHHHHCCcHHHHHHHHh-----cCCC
Confidence 35789999999999999999999776432 3455555543322 111111111112222222211 2346
Q ss_pred EEEecchhhh
Q 003070 165 IIYTGDLKWT 174 (850)
Q Consensus 165 ILfIdELh~l 174 (850)
+|.|||++.+
T Consensus 167 lLiiDdlg~~ 176 (259)
T PRK09183 167 LLIIDEIGYL 176 (259)
T ss_pred EEEEcccccC
Confidence 8999999653
No 480
>PRK13695 putative NTPase; Provisional
Probab=91.37 E-value=0.39 Score=48.31 Aligned_cols=39 Identities=21% Similarity=0.486 Sum_probs=27.4
Q ss_pred hhCCCEEEeeccc---cccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 564 KNYEKLVVLVEDI---DLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 564 r~~P~sVvlldei---ekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.++|. |+++||+ |-.++.++..|.++++.|+ -+|+|++.
T Consensus 94 l~~~~-~lllDE~~~~e~~~~~~~~~l~~~~~~~~----~~i~v~h~ 135 (174)
T PRK13695 94 LEEAD-VIIIDEIGKMELKSPKFVKAVEEVLDSEK----PVIATLHR 135 (174)
T ss_pred cCCCC-EEEEECCCcchhhhHHHHHHHHHHHhCCC----eEEEEECc
Confidence 34554 8999984 4557888899999997764 45556663
No 481
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.25 E-value=0.19 Score=49.06 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEecCCchHHHHHHHHHHHHh
Q 003070 512 FLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
++|.|+.|+|||++|+.|++.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 5789999999999999999983
No 482
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.24 E-value=0.8 Score=47.90 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.3
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
--+++.||.|.|||.+.+.++-.+
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999997443
No 483
>PRK06762 hypothetical protein; Provisional
Probab=91.23 E-value=0.19 Score=49.92 Aligned_cols=32 Identities=25% Similarity=0.446 Sum_probs=25.1
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEec
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID 544 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id 544 (850)
..++|.|++|+|||++|+.|++.+ | ...+.++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l-~--~~~~~i~ 34 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL-G--RGTLLVS 34 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-C--CCeEEec
Confidence 356789999999999999999987 3 2444454
No 484
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=91.14 E-value=0.44 Score=52.91 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=48.1
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHh-hhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEec
Q 003070 475 RSDLYKVLQENVPWQFDSIHSIVEVLVEC-KSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID 544 (850)
Q Consensus 475 l~~L~~~L~~~V~gQ~eai~~Ia~av~~~-r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id 544 (850)
+..|.+.|.+-=+-|.+.+..+.+++... |.-.+.--++|.|+.|+|||++++.||+.+ .-.++.+|
T Consensus 98 ~~~l~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~L---g~~~id~D 165 (309)
T PRK08154 98 WLLIRELLEQASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARL---GVPFVELN 165 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHc---CCCEEeHH
Confidence 44666666666666777777888775533 433556678899999999999999999988 24455444
No 485
>PRK14532 adenylate kinase; Provisional
Probab=91.13 E-value=0.18 Score=51.23 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=25.9
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
++|.||+|+|||++|+.||+.+ .+++|++..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~-----g~~~is~~d 33 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER-----GMVQLSTGD 33 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc-----CCeEEeCcH
Confidence 6789999999999999999866 367777653
No 486
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=91.12 E-value=1 Score=46.51 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=59.1
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHh-cCCCCceEEecCcc---c---------------c-----C--------CCC-C
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESV-FGSTDLLFHIDMRK---R---------------N-----D--------GVS-S 554 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~l-fgs~~~~i~idms~---~---------------~-----~--------~~~-~ 554 (850)
+.-.+.+.||+|+|||+|.+.||-.+ .-...--|.+|-.. + + . ..+ .
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~~~ 104 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVNEG 104 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhcccc
Confidence 44577899999999999999999874 11111123332110 0 0 0 000 1
Q ss_pred chh------hHHHHhhhCCCEEEeeccccc-cCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 555 HSE------MLMGTLKNYEKLVVLVEDIDL-ADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 555 ~~~------~l~e~vr~~P~sVvlldeiek-A~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+.+ .|+.++-.+|- |+||||--- -|+..+..|.+++.+-.=....|||+|.
T Consensus 105 LS~G~~qrv~laral~~~p~-illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh 162 (200)
T cd03217 105 FSGGEKKRNEILQLLLLEPD-LAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162 (200)
T ss_pred CCHHHHHHHHHHHHHhcCCC-EEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 111 48888889995 999999874 4777777777777642212344555555
No 487
>PRK07261 topology modulation protein; Provisional
Probab=91.11 E-value=0.21 Score=50.57 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=25.3
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
+++.|++|+|||++|+.||+.+ | -..+.+|.-
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~-~--~~~i~~D~~ 34 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY-N--CPVLHLDTL 34 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh-C--CCeEecCCE
Confidence 5789999999999999999875 2 345666643
No 488
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=91.10 E-value=0.22 Score=48.35 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=20.8
Q ss_pred EEEecCCchHHHHHHHHHHHHh
Q 003070 512 FLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
+++.|+.|+|||++|+.||+.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 489
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=91.10 E-value=0.68 Score=57.13 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=71.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc---ccc----------------------------------
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR---KRN---------------------------------- 549 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms---~~~---------------------------------- 549 (850)
++.-.+.+.|+.|+||++|+|-|+.++--. .--|++|-- ..+
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~-~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~ 575 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ-QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEAT 575 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCC
Confidence 345678899999999999999999887543 334777532 110
Q ss_pred -C-----------------CCCCch-----------h------hHHHHhhhCCCEEEeecccccc-CHHHHHHHHhhhcc
Q 003070 550 -D-----------------GVSSHS-----------E------MLMGTLKNYEKLVVLVEDIDLA-DPQFIKILADGFET 593 (850)
Q Consensus 550 -~-----------------~~~~~~-----------~------~l~e~vr~~P~sVvlldeiekA-~~~v~~~l~q~~d~ 593 (850)
+ -|.||- | .|+.++-++|. |++|||---| |+.-...+.|.|..
T Consensus 576 ~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~-ILlLDEaTSaLD~~sE~~I~~~L~~ 654 (709)
T COG2274 576 DEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPK-ILLLDEATSALDPETEAIILQNLLQ 654 (709)
T ss_pred HHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCC-EEEEeCcccccCHhHHHHHHHHHHH
Confidence 0 133431 1 49999999998 9999998866 78888888887765
Q ss_pred CccCceEEEEecCCC
Q 003070 594 ENFGKVIFVLTKGDS 608 (850)
Q Consensus 594 G~l~n~Iii~Tsn~~ 608 (850)
=.-.+|+|+.|=+.+
T Consensus 655 ~~~~~T~I~IaHRl~ 669 (709)
T COG2274 655 ILQGRTVIIIAHRLS 669 (709)
T ss_pred HhcCCeEEEEEccch
Confidence 444478888877643
No 490
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.08 E-value=0.37 Score=54.97 Aligned_cols=76 Identities=12% Similarity=0.148 Sum_probs=51.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeEEE
Q 003070 88 RNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIY 167 (850)
Q Consensus 88 ~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvILf 167 (850)
||.++-|+||.|||-++++||++ .| |-.+-.--=|+++| -.+--.++.+|.+-.+. +..|++||
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~--SG-----lDYA~mTGGDVAPl------G~qaVTkiH~lFDWakk---S~rGLllF 448 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARH--SG-----LDYAIMTGGDVAPL------GAQAVTKIHKLFDWAKK---SRRGLLLF 448 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhh--cC-----CceehhcCCCcccc------chHHHHHHHHHHHHHhh---cccceEEE
Confidence 48899999999999999999986 12 11110000112222 12334578888888876 57899999
Q ss_pred ecchhhhhcCCc
Q 003070 168 TGDLKWTVDQQE 179 (850)
Q Consensus 168 IdELh~lvgag~ 179 (850)
|||...++-...
T Consensus 449 IDEADAFLceRn 460 (630)
T KOG0742|consen 449 IDEADAFLCERN 460 (630)
T ss_pred ehhhHHHHHHhc
Confidence 999998886553
No 491
>PRK06921 hypothetical protein; Provisional
Probab=91.06 E-value=0.69 Score=50.40 Aligned_cols=73 Identities=16% Similarity=0.217 Sum_probs=45.4
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeE
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAI 165 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvI 165 (850)
..+|.+|.|++|+|||-++..++..+.+. +|..|+-+....+ +... +..|+ .+.+.++.+. .--+
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~------~g~~v~y~~~~~l-~~~l-~~~~~-~~~~~~~~~~------~~dl 180 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRK------KGVPVLYFPFVEG-FGDL-KDDFD-LLEAKLNRMK------KVEV 180 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhh------cCceEEEEEHHHH-HHHH-HHHHH-HHHHHHHHhc------CCCE
Confidence 46789999999999999999998876542 1566666654322 1111 22221 2223333333 3479
Q ss_pred EEecchhh
Q 003070 166 IYTGDLKW 173 (850)
Q Consensus 166 LfIdELh~ 173 (850)
|.||||+.
T Consensus 181 LiIDDl~~ 188 (266)
T PRK06921 181 LFIDDLFK 188 (266)
T ss_pred EEEecccc
Confidence 99999965
No 492
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.03 E-value=0.17 Score=50.92 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=22.6
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcC
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFG 535 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfg 535 (850)
++++.||+|+|||++++.||..+..
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 6889999999999999999998643
No 493
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.03 E-value=2.1 Score=49.78 Aligned_cols=98 Identities=18% Similarity=0.239 Sum_probs=56.4
Q ss_pred CeEEEEecCCchHHHHHHHHHHHH-hc--C-CCCceEEecCcccc---------C--CCC-----CchhhHHHHhhhCCC
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAES-VF--G-STDLLFHIDMRKRN---------D--GVS-----SHSEMLMGTLKNYEK 568 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~-lf--g-s~~~~i~idms~~~---------~--~~~-----~~~~~l~e~vr~~P~ 568 (850)
..-+.|+||+|+|||++.+.||-. ++ | ..-.+|..|--... + +-| .-.+......+-+.+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 367889999999999999999964 33 2 23355555543210 0 001 011222222234567
Q ss_pred EEEeeccccccC--HHHHHHHHhhhccCccCceEEEEecC
Q 003070 569 LVVLVEDIDLAD--PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 569 sVvlldeiekA~--~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.+||+|-.-.-+ ..+..-|......+.--..++||.++
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at 310 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNAT 310 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCC
Confidence 899999876655 34444444433334333778888776
No 494
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=90.96 E-value=0.18 Score=50.93 Aligned_cols=33 Identities=18% Similarity=0.403 Sum_probs=25.2
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
-+++.|+.|+|||++|++|++.+- ..+++++..
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~---~~~~~~~~D 36 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLA---EPWLHFGVD 36 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC---CCccccCcc
Confidence 367999999999999999998862 234555443
No 495
>PRK00889 adenylylsulfate kinase; Provisional
Probab=90.96 E-value=0.23 Score=49.90 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=30.1
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
--+.|.|+.|+|||++|+.||..+......++.+|...
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 35678999999999999999999875444566676643
No 496
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=90.95 E-value=0.23 Score=50.94 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=20.5
Q ss_pred EEEecCCchHHHHHHHHHHHHh
Q 003070 512 FLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
+.+.||+|+|||++|+.|+..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999988
No 497
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.93 E-value=0.51 Score=59.20 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=55.9
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCC---------------CC-------------------c
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGV---------------SS-------------------H 555 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~---------------~~-------------------~ 555 (850)
-..++.||.|.|||.++...+.. ++ ..+-+.+..++..+ ++ .
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~-~~---~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAG-KN---NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSL 108 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHh-CC---CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHH
Confidence 35788999999999999998754 33 34445554332100 00 0
Q ss_pred hhhHHHHhhh-CCCEEEeeccccccC-HHHHHHHHhhhccCccCceEEEEecC
Q 003070 556 SEMLMGTLKN-YEKLVVLVEDIDLAD-PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 556 ~~~l~e~vr~-~P~sVvlldeiekA~-~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+..+..++.+ ..--||+|||+..++ +.+...|...++.. -.+..+|+||.
T Consensus 109 ~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~-~~~~~lv~~sR 160 (903)
T PRK04841 109 FAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ-PENLTLVVLSR 160 (903)
T ss_pred HHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC-CCCeEEEEEeC
Confidence 1123344443 233589999999997 55555666656542 34667777776
No 498
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=90.90 E-value=0.98 Score=47.99 Aligned_cols=94 Identities=12% Similarity=0.109 Sum_probs=51.4
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh-cCCCCceE-------------EecCccccC--CCC-Cch---hhHHHHhhh-CCC
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV-FGSTDLLF-------------HIDMRKRND--GVS-SHS---EMLMGTLKN-YEK 568 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l-fgs~~~~i-------------~idms~~~~--~~~-~~~---~~l~e~vr~-~P~ 568 (850)
-.+++.||.|.|||.+.+.++-.. ....-.++ ..+|...+. ... +|. .++.+.++. .+.
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~ 111 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTSR 111 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCCC
Confidence 356799999999999999998732 11111111 112222111 111 122 256666663 567
Q ss_pred EEEeeccccccC--HH----HHHHHHhhhccCccCceEEEEecC
Q 003070 569 LVVLVEDIDLAD--PQ----FIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 569 sVvlldeiekA~--~~----v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
++|||||+.+.- .+ .+.++....+. .++.+|++|-
T Consensus 112 sLvllDE~~~gT~~~d~~~i~~~il~~l~~~---~~~~~i~~TH 152 (222)
T cd03287 112 SLVILDELGRGTSTHDGIAIAYATLHYLLEE---KKCLVLFVTH 152 (222)
T ss_pred eEEEEccCCCCCChhhHHHHHHHHHHHHHhc---cCCeEEEEcc
Confidence 999999986542 11 12223333332 4677777776
No 499
>PF05729 NACHT: NACHT domain
Probab=90.89 E-value=1.2 Score=43.30 Aligned_cols=88 Identities=13% Similarity=0.065 Sum_probs=47.7
Q ss_pred eEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeeccccccccc--C-hhHHHHHHHHHHHHHh----ccccCCC
Q 003070 90 TVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFM--K-KEEVEMNLTELKRKVD----SLTSVGG 162 (850)
Q Consensus 90 PVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~--~-RgefE~RlkeL~~~V~----~~~~~~~ 162 (850)
.+|+|++|+|||.++..++.....+.-+..- -.-++-+.+....-... . ...+...+......+. ......+
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSK-FPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCccccc-ceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 4789999999999999999999988644321 12233333322110000 0 1111111111111111 1111366
Q ss_pred CeEEEecchhhhhcCC
Q 003070 163 GAIIYTGDLKWTVDQQ 178 (850)
Q Consensus 163 gvILfIdELh~lvgag 178 (850)
.++|.||-+-.+.+..
T Consensus 82 ~~llilDglDE~~~~~ 97 (166)
T PF05729_consen 82 RVLLILDGLDELEEQD 97 (166)
T ss_pred ceEEEEechHhcccch
Confidence 8999999999987754
No 500
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=90.88 E-value=0.73 Score=48.20 Aligned_cols=27 Identities=11% Similarity=-0.031 Sum_probs=22.8
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCC
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGS 536 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs 536 (850)
--+.+.||.|+|||+|.+.|+-++.-+
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl~~~~ 40 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGLDAPD 40 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCccCC
Confidence 456799999999999999999876533
Done!