Query 003070
Match_columns 850
No_of_seqs 226 out of 1539
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 12:13:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003070.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003070hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qvr_A CLPB protein; coiled co 100.0 9.2E-52 3.1E-56 504.8 33.5 595 69-821 173-838 (854)
2 1r6b_X CLPA protein; AAA+, N-t 100.0 6.5E-50 2.2E-54 482.0 42.8 511 68-821 188-734 (758)
3 3pxi_A Negative regulator of g 100.0 2.1E-49 7.2E-54 478.1 35.4 514 69-821 183-743 (758)
4 4fcw_A Chaperone protein CLPB; 99.9 9.5E-24 3.2E-28 226.0 24.8 262 470-822 3-298 (311)
5 3hws_A ATP-dependent CLP prote 99.8 1.1E-19 3.8E-24 200.4 16.0 259 475-810 6-329 (363)
6 1um8_A ATP-dependent CLP prote 99.8 1.4E-18 4.6E-23 192.5 20.1 256 475-809 12-345 (376)
7 3pxg_A Negative regulator of g 99.8 1.4E-19 4.8E-24 207.2 10.5 145 68-255 182-326 (468)
8 1ofh_A ATP-dependent HSL prote 99.7 5.4E-16 1.9E-20 165.0 18.5 217 475-806 6-276 (310)
9 1g41_A Heat shock protein HSLU 99.5 7.3E-14 2.5E-18 158.6 16.8 85 722-809 319-413 (444)
10 1jbk_A CLPB protein; beta barr 99.5 6.3E-14 2.1E-18 136.6 12.6 162 69-255 25-186 (195)
11 3syl_A Protein CBBX; photosynt 99.5 6E-13 2E-17 142.2 20.8 218 473-810 20-269 (309)
12 2p65_A Hypothetical protein PF 99.5 5.7E-14 1.9E-18 137.1 11.4 161 69-254 25-186 (187)
13 1ypw_A Transitional endoplasmi 99.5 1.2E-14 4E-19 176.7 7.1 151 70-255 208-373 (806)
14 3m6a_A ATP-dependent protease 99.4 5.2E-13 1.8E-17 155.6 14.9 212 477-808 74-320 (543)
15 3cf2_A TER ATPase, transitiona 99.4 1.1E-12 3.8E-17 158.4 17.7 151 71-256 212-374 (806)
16 2bjv_A PSP operon transcriptio 99.4 1.5E-12 5.3E-17 136.6 15.6 122 484-607 6-150 (265)
17 1ojl_A Transcriptional regulat 99.3 3.5E-11 1.2E-15 130.1 16.1 202 484-800 2-232 (304)
18 3pfi_A Holliday junction ATP-d 99.3 1.2E-10 4.1E-15 126.2 19.0 104 485-596 30-135 (338)
19 1hqc_A RUVB; extended AAA-ATPa 99.2 3.4E-10 1.2E-14 121.4 16.4 104 485-596 13-119 (324)
20 3n70_A Transport activator; si 99.1 2E-10 6.8E-15 110.4 9.5 115 484-607 1-115 (145)
21 3u61_B DNA polymerase accessor 99.1 6E-10 2.1E-14 120.1 14.2 114 485-607 27-145 (324)
22 3eie_A Vacuolar protein sortin 99.1 2.2E-09 7.6E-14 116.4 17.8 199 485-810 19-242 (322)
23 2zan_A Vacuolar protein sortin 99.1 4.9E-09 1.7E-13 119.1 21.2 200 485-810 135-359 (444)
24 1xwi_A SKD1 protein; VPS4B, AA 99.1 8.7E-09 3E-13 112.2 21.9 200 485-810 13-237 (322)
25 3b9p_A CG5977-PA, isoform A; A 99.0 4.4E-09 1.5E-13 111.8 18.2 119 485-606 22-167 (297)
26 2qp9_X Vacuolar protein sortin 99.0 3.7E-09 1.3E-13 116.6 17.7 200 484-810 51-275 (355)
27 2chg_A Replication factor C sm 99.0 2.7E-09 9.3E-14 106.1 15.1 117 485-607 18-141 (226)
28 3vfd_A Spastin; ATPase, microt 99.0 2.5E-09 8.6E-14 119.0 16.4 120 485-607 116-261 (389)
29 3uk6_A RUVB-like 2; hexameric 99.0 6.5E-09 2.2E-13 113.6 19.3 121 485-607 45-228 (368)
30 1iqp_A RFCS; clamp loader, ext 99.0 3.2E-09 1.1E-13 113.3 16.1 117 485-607 26-149 (327)
31 1ny5_A Transcriptional regulat 99.0 5.2E-09 1.8E-13 116.9 18.1 203 484-801 137-368 (387)
32 3d8b_A Fidgetin-like protein 1 99.0 4E-09 1.4E-13 116.3 16.6 121 484-607 84-230 (357)
33 3co5_A Putative two-component 99.0 2.2E-10 7.5E-15 110.0 5.3 110 485-606 5-114 (143)
34 3t15_A Ribulose bisphosphate c 99.0 6.8E-10 2.3E-14 119.3 9.4 96 509-607 36-164 (293)
35 1sxj_D Activator 1 41 kDa subu 99.0 3.1E-09 1E-13 115.0 13.6 115 485-606 38-171 (353)
36 1g8p_A Magnesium-chelatase 38 99.0 5.7E-09 1.9E-13 112.9 15.2 104 485-595 25-172 (350)
37 3pvs_A Replication-associated 99.0 4.5E-09 1.5E-13 119.8 14.9 109 484-605 26-141 (447)
38 1fnn_A CDC6P, cell division co 99.0 1.5E-08 5.1E-13 110.8 18.3 124 484-607 17-168 (389)
39 3k1j_A LON protease, ATP-depen 98.9 3.5E-09 1.2E-13 124.8 14.0 48 484-537 41-88 (604)
40 2chq_A Replication factor C sm 98.9 4.8E-09 1.7E-13 111.5 13.8 117 485-607 18-141 (319)
41 2qz4_A Paraplegin; AAA+, SPG7, 98.9 2.6E-08 8.9E-13 103.3 18.6 121 484-607 6-154 (262)
42 1sxj_B Activator 1 37 kDa subu 98.9 7.5E-09 2.6E-13 110.2 13.7 116 485-607 22-146 (323)
43 2qby_B CDC6 homolog 3, cell di 98.9 7.5E-09 2.6E-13 113.3 13.7 118 484-607 20-173 (384)
44 1jr3_A DNA polymerase III subu 98.9 5.7E-08 2E-12 105.8 20.1 116 485-606 17-157 (373)
45 1njg_A DNA polymerase III subu 98.9 8.4E-08 2.9E-12 96.1 19.7 114 485-607 24-165 (250)
46 3h4m_A Proteasome-activating n 98.9 8.5E-09 2.9E-13 108.8 12.4 120 485-607 18-165 (285)
47 3nbx_X ATPase RAVA; AAA+ ATPas 98.9 4E-09 1.4E-13 121.8 9.5 127 472-606 10-157 (500)
48 2r44_A Uncharacterized protein 98.8 1.1E-08 3.6E-13 110.8 11.3 123 473-606 16-158 (331)
49 1sxj_E Activator 1 40 kDa subu 98.8 5.2E-08 1.8E-12 105.8 16.3 117 485-607 15-173 (354)
50 1a5t_A Delta prime, HOLB; zinc 98.8 2E-08 6.7E-13 109.7 12.7 116 486-607 4-147 (334)
51 3dzd_A Transcriptional regulat 98.8 7.4E-08 2.5E-12 107.0 17.5 200 485-800 130-358 (368)
52 3bos_A Putative DNA replicatio 98.8 4.4E-08 1.5E-12 99.3 14.4 93 508-606 51-146 (242)
53 1sxj_C Activator 1 40 kDa subu 98.8 4.7E-08 1.6E-12 106.5 14.6 113 485-607 26-149 (340)
54 1d2n_A N-ethylmaleimide-sensit 98.7 2.4E-08 8.1E-13 105.2 10.7 123 482-607 31-176 (272)
55 3cf0_A Transitional endoplasmi 98.7 3.7E-08 1.3E-12 105.9 12.0 120 485-607 16-163 (301)
56 1jbk_A CLPB protein; beta barr 98.7 1.2E-08 4.3E-13 98.9 7.6 115 484-606 22-159 (195)
57 2v1u_A Cell division control p 98.7 2.8E-08 9.5E-13 108.2 11.0 124 484-607 19-176 (387)
58 2p65_A Hypothetical protein PF 98.7 1.8E-08 6.2E-13 97.9 7.5 115 484-606 22-160 (187)
59 3f9v_A Minichromosome maintena 98.7 4.9E-09 1.7E-13 123.5 4.0 127 474-607 285-443 (595)
60 4b4t_I 26S protease regulatory 98.7 3.2E-07 1.1E-11 103.5 18.2 117 485-607 183-330 (437)
61 1l8q_A Chromosomal replication 98.7 1E-07 3.5E-12 102.9 13.2 97 508-606 36-139 (324)
62 4b4t_M 26S protease regulatory 98.7 3.3E-07 1.1E-11 103.9 17.6 117 485-607 182-329 (434)
63 4b4t_J 26S protease regulatory 98.7 8.3E-08 2.8E-12 107.7 12.3 117 485-607 149-296 (405)
64 3te6_A Regulatory protein SIR3 98.6 3.6E-08 1.2E-12 107.6 8.0 120 486-607 22-172 (318)
65 3vfd_A Spastin; ATPase, microt 98.6 1.1E-07 3.8E-12 105.7 12.0 153 70-255 119-283 (389)
66 2r62_A Cell division protease 98.6 3.8E-08 1.3E-12 103.0 5.6 120 486-608 13-161 (268)
67 1lv7_A FTSH; alpha/beta domain 98.6 3.8E-07 1.3E-11 95.0 13.1 120 485-607 13-159 (257)
68 2gno_A DNA polymerase III, gam 98.6 2.1E-07 7.2E-12 100.8 11.5 112 488-607 1-121 (305)
69 4b4t_K 26S protease regulatory 98.6 3.3E-07 1.1E-11 103.8 13.5 117 485-607 173-320 (428)
70 4b4t_L 26S protease subunit RP 98.6 3.9E-07 1.3E-11 103.4 14.1 117 485-607 182-329 (437)
71 2z4s_A Chromosomal replication 98.5 3.4E-07 1.2E-11 103.9 13.2 97 509-606 130-235 (440)
72 3hu3_A Transitional endoplasmi 98.5 1.6E-07 5.3E-12 108.3 10.5 121 484-608 204-350 (489)
73 3d8b_A Fidgetin-like protein 1 98.5 5.4E-07 1.8E-11 99.2 13.6 153 70-255 88-252 (357)
74 3h4m_A Proteasome-activating n 98.5 9.3E-07 3.2E-11 93.1 14.8 154 69-255 20-189 (285)
75 3syl_A Protein CBBX; photosynt 98.5 9.1E-07 3.1E-11 94.1 14.6 156 70-255 35-205 (309)
76 2c9o_A RUVB-like 1; hexameric 98.5 1.6E-07 5.4E-12 106.9 8.8 95 484-579 37-138 (456)
77 4b4t_H 26S protease regulatory 98.5 6.7E-07 2.3E-11 101.8 13.7 116 486-607 211-357 (467)
78 2ce7_A Cell division protein F 98.5 6.8E-07 2.3E-11 102.6 13.6 120 485-608 17-164 (476)
79 3eie_A Vacuolar protein sortin 98.5 1.3E-06 4.5E-11 94.5 14.4 152 70-255 22-185 (322)
80 1xwi_A SKD1 protein; VPS4B, AA 98.4 1.9E-06 6.5E-11 93.7 14.0 136 87-255 45-180 (322)
81 1qvr_A CLPB protein; coiled co 98.4 1.3E-06 4.3E-11 107.0 13.7 115 484-606 170-307 (854)
82 1r6b_X CLPA protein; AAA+, N-t 98.4 1.9E-06 6.7E-11 103.7 15.0 115 484-606 186-323 (758)
83 3pxg_A Negative regulator of g 98.4 5.4E-07 1.8E-11 103.0 9.5 113 485-608 181-301 (468)
84 3b9p_A CG5977-PA, isoform A; A 98.4 2.4E-06 8.2E-11 90.6 12.9 153 70-255 25-190 (297)
85 2w58_A DNAI, primosome compone 98.3 3.3E-07 1.1E-11 91.8 5.4 96 510-607 55-158 (202)
86 4b4t_J 26S protease regulatory 98.3 3.7E-06 1.3E-10 94.3 14.0 138 86-255 181-320 (405)
87 2qby_A CDC6 homolog 1, cell di 98.3 3.4E-07 1.2E-11 99.3 5.4 124 484-607 20-172 (386)
88 2qp9_X Vacuolar protein sortin 98.3 2.1E-06 7.3E-11 94.5 11.6 152 70-255 55-218 (355)
89 4b4t_I 26S protease regulatory 98.3 4.9E-06 1.7E-10 93.9 14.6 138 86-255 215-354 (437)
90 1sxj_A Activator 1 95 kDa subu 98.3 1.2E-06 4E-11 101.3 9.7 116 485-606 40-187 (516)
91 3hu3_A Transitional endoplasmi 98.3 4.2E-06 1.4E-10 96.4 14.0 153 69-256 207-374 (489)
92 2qz4_A Paraplegin; AAA+, SPG7, 98.3 8.8E-06 3E-10 84.1 14.8 139 86-255 38-178 (262)
93 1in4_A RUVB, holliday junction 98.3 3E-05 1E-09 84.5 19.6 104 485-596 26-131 (334)
94 3ec2_A DNA replication protein 98.3 1.2E-06 4E-11 86.4 7.6 97 509-607 38-142 (180)
95 4b4t_H 26S protease regulatory 98.2 6.9E-06 2.3E-10 93.6 14.2 139 85-255 241-381 (467)
96 2zan_A Vacuolar protein sortin 98.2 3.4E-06 1.2E-10 95.8 11.6 153 70-255 138-302 (444)
97 2dhr_A FTSH; AAA+ protein, hex 98.2 5.8E-06 2E-10 95.4 13.4 119 485-607 32-178 (499)
98 4b4t_M 26S protease regulatory 98.2 7.3E-06 2.5E-10 93.0 13.7 138 86-255 214-353 (434)
99 4b4t_L 26S protease subunit RP 98.2 1.2E-05 4E-10 91.4 15.3 139 86-255 214-353 (437)
100 4b4t_K 26S protease regulatory 98.2 6.8E-06 2.3E-10 93.0 13.3 135 86-252 205-341 (428)
101 3pxi_A Negative regulator of g 98.2 3.3E-06 1.1E-10 101.9 10.0 112 485-607 181-300 (758)
102 3cf0_A Transitional endoplasmi 98.1 7.9E-06 2.7E-10 87.7 11.1 155 70-256 19-188 (301)
103 2x8a_A Nuclear valosin-contain 98.1 9.7E-06 3.3E-10 86.2 11.6 96 508-607 44-155 (274)
104 1lv7_A FTSH; alpha/beta domain 98.1 2.5E-05 8.6E-10 81.2 13.7 137 87-255 45-183 (257)
105 1d2n_A N-ethylmaleimide-sensit 98.1 5.3E-05 1.8E-09 79.4 15.9 151 70-253 37-197 (272)
106 1ixz_A ATP-dependent metallopr 98.1 1.2E-05 4.1E-10 83.4 10.4 96 508-607 49-163 (254)
107 1iy2_A ATP-dependent metallopr 98.0 1.5E-05 5.1E-10 84.2 10.3 95 509-607 74-187 (278)
108 1ypw_A Transitional endoplasmi 98.0 9.4E-06 3.2E-10 98.8 9.1 120 485-607 205-349 (806)
109 2kjq_A DNAA-related protein; s 98.0 5.9E-06 2E-10 80.1 5.9 87 509-606 36-123 (149)
110 2qgz_A Helicase loader, putati 98.0 3E-06 1E-10 91.8 4.1 97 509-607 152-257 (308)
111 2v1u_A Cell division control p 98.0 1.8E-05 6.3E-10 85.8 10.1 158 69-255 22-202 (387)
112 2ce7_A Cell division protein F 97.9 7.4E-05 2.5E-09 85.8 14.2 138 87-255 49-187 (476)
113 2qby_A CDC6 homolog 1, cell di 97.9 3.5E-05 1.2E-09 83.4 11.0 157 69-255 23-198 (386)
114 1w5s_A Origin recognition comp 97.9 2.1E-05 7.2E-10 86.5 9.0 123 484-606 22-187 (412)
115 1ofh_A ATP-dependent HSL prote 97.9 1.8E-05 6.2E-10 83.6 7.4 160 70-255 19-203 (310)
116 1fnn_A CDC6P, cell division co 97.8 9.1E-05 3.1E-09 80.7 12.7 152 68-255 19-194 (389)
117 3cf2_A TER ATPase, transitiona 97.8 2E-05 6.7E-10 95.6 7.8 138 86-255 510-649 (806)
118 2r62_A Cell division protease 97.8 6.7E-06 2.3E-10 85.9 1.9 153 72-255 20-184 (268)
119 3pvs_A Replication-associated 97.7 6.5E-05 2.2E-09 85.5 9.5 134 70-255 30-166 (447)
120 3t15_A Ribulose bisphosphate c 97.7 5.4E-05 1.8E-09 81.1 7.6 138 89-252 38-185 (293)
121 2qby_B CDC6 homolog 3, cell di 97.7 0.00012 4E-09 79.9 10.4 153 68-255 22-198 (384)
122 2chg_A Replication factor C sm 97.6 0.00019 6.7E-09 70.7 9.8 97 69-176 20-116 (226)
123 3f8t_A Predicted ATPase involv 97.6 6E-05 2E-09 86.1 6.4 123 475-607 205-348 (506)
124 3te6_A Regulatory protein SIR3 97.6 9.1E-05 3.1E-09 80.8 7.2 157 69-255 23-199 (318)
125 1w5s_A Origin recognition comp 97.5 0.00045 1.5E-08 75.8 12.8 106 68-177 24-153 (412)
126 3pfi_A Holliday junction ATP-d 97.5 0.00023 8E-09 76.6 9.6 83 69-175 32-119 (338)
127 2c9o_A RUVB-like 1; hexameric 97.4 0.0002 6.8E-09 81.3 8.2 98 70-179 41-143 (456)
128 2qen_A Walker-type ATPase; unk 97.4 0.00038 1.3E-08 74.3 8.9 109 485-606 13-172 (350)
129 3u61_B DNA polymerase accessor 97.4 0.00073 2.5E-08 72.4 11.2 137 69-255 29-166 (324)
130 1jr3_D DNA polymerase III, del 97.3 0.0021 7.2E-08 69.6 14.7 93 507-607 16-116 (343)
131 3jvv_A Twitching mobility prot 97.3 0.00057 1.9E-08 75.6 9.5 93 507-606 121-229 (356)
132 3n70_A Transport activator; si 97.2 0.0003 1E-08 67.1 5.8 82 70-174 5-88 (145)
133 2dhr_A FTSH; AAA+ protein, hex 97.2 0.0015 5E-08 75.4 12.4 137 88-256 65-203 (499)
134 1njg_A DNA polymerase III subu 97.2 0.0014 4.7E-08 65.1 10.4 45 69-113 26-71 (250)
135 2fna_A Conserved hypothetical 97.2 0.0011 3.6E-08 70.9 9.6 92 510-606 31-178 (357)
136 2fna_A Conserved hypothetical 97.1 0.0021 7.2E-08 68.6 11.1 39 69-111 16-54 (357)
137 2x8a_A Nuclear valosin-contain 97.1 0.0025 8.5E-08 67.6 11.5 134 87-255 44-179 (274)
138 2qen_A Walker-type ATPase; unk 97.1 0.001 3.5E-08 71.0 8.3 41 69-111 15-55 (350)
139 2eyu_A Twitching motility prot 97.0 0.0018 6.3E-08 68.3 9.9 94 507-607 23-132 (261)
140 1um8_A ATP-dependent CLP prote 97.0 0.00095 3.2E-08 73.4 7.9 82 86-177 71-152 (376)
141 1sxj_A Activator 1 95 kDa subu 97.0 0.0026 8.8E-08 73.4 11.3 142 69-255 42-210 (516)
142 4akg_A Glutathione S-transfera 96.9 0.00074 2.5E-08 91.0 7.1 88 512-606 648-755 (2695)
143 1tue_A Replication protein E1; 96.9 0.0005 1.7E-08 70.6 4.2 84 510-606 59-155 (212)
144 2bjv_A PSP operon transcriptio 96.9 0.00079 2.7E-08 70.1 5.7 57 70-133 10-68 (265)
145 1ixz_A ATP-dependent metallopr 96.9 0.0033 1.1E-07 64.9 10.1 138 87-256 49-188 (254)
146 1hqc_A RUVB; extended AAA-ATPa 96.9 0.0022 7.4E-08 68.3 8.8 84 69-175 15-103 (324)
147 3uk6_A RUVB-like 2; hexameric 96.9 0.00055 1.9E-08 74.4 4.1 43 70-112 48-95 (368)
148 3hws_A ATP-dependent CLP prote 96.8 0.0012 4.3E-08 72.1 6.8 98 70-178 19-132 (363)
149 2chq_A Replication factor C sm 96.8 0.0015 5.2E-08 68.9 7.0 143 69-255 20-162 (319)
150 2ewv_A Twitching motility prot 96.8 0.0025 8.6E-08 70.6 8.9 94 507-607 134-243 (372)
151 3upu_A ATP-dependent DNA helic 96.6 0.0051 1.8E-07 69.7 10.2 100 487-592 28-153 (459)
152 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0023 8E-08 69.9 6.6 94 510-606 124-234 (331)
153 3co5_A Putative two-component 96.5 0.001 3.4E-08 63.3 3.0 78 70-174 8-87 (143)
154 3bos_A Putative DNA replicatio 96.5 0.0029 1E-07 63.5 6.4 82 72-176 37-118 (242)
155 1iy2_A ATP-dependent metallopr 96.4 0.0098 3.4E-07 62.4 10.2 75 87-177 73-147 (278)
156 1ye8_A Protein THEP1, hypothet 96.4 0.0069 2.3E-07 60.1 8.4 43 559-604 87-137 (178)
157 1ojl_A Transcriptional regulat 96.4 0.00077 2.6E-08 72.5 1.5 55 70-131 6-62 (304)
158 4fcw_A Chaperone protein CLPB; 96.3 0.011 3.6E-07 62.5 9.4 89 70-174 21-131 (311)
159 4akg_A Glutathione S-transfera 96.2 0.0053 1.8E-07 82.9 8.1 94 510-606 1268-1392(2695)
160 1sxj_B Activator 1 37 kDa subu 96.2 0.0074 2.5E-07 63.7 7.8 95 69-176 24-121 (323)
161 1jr3_A DNA polymerase III subu 96.1 0.019 6.5E-07 62.0 10.6 146 69-255 19-179 (373)
162 1l8q_A Chromosomal replication 96.0 0.01 3.6E-07 63.5 7.9 75 87-176 37-112 (324)
163 2orw_A Thymidine kinase; TMTK, 96.0 0.0063 2.2E-07 60.7 5.6 90 512-606 6-111 (184)
164 2a5y_B CED-4; apoptosis; HET: 96.0 0.033 1.1E-06 64.5 12.4 109 488-606 132-273 (549)
165 1iqp_A RFCS; clamp loader, ext 95.9 0.0086 2.9E-07 63.3 6.5 96 69-175 28-123 (327)
166 3e1s_A Exodeoxyribonuclease V, 95.7 0.013 4.6E-07 68.5 7.6 91 488-594 193-306 (574)
167 1sxj_D Activator 1 41 kDa subu 95.7 0.013 4.6E-07 62.7 6.7 100 69-176 40-147 (353)
168 2pt7_A CAG-ALFA; ATPase, prote 95.6 0.017 5.7E-07 63.0 7.4 81 510-595 172-265 (330)
169 2fz4_A DNA repair protein RAD2 95.6 0.021 7.2E-07 58.9 7.7 89 512-606 111-227 (237)
170 1z6t_A APAF-1, apoptotic prote 95.6 0.047 1.6E-06 63.2 11.5 108 486-606 126-265 (591)
171 3vkg_A Dynein heavy chain, cyt 95.4 0.013 4.5E-07 79.9 6.8 92 512-606 1307-1430(3245)
172 3m6a_A ATP-dependent protease 95.2 0.019 6.4E-07 66.8 6.2 76 87-177 108-190 (543)
173 2w0m_A SSO2452; RECA, SSPF, un 95.2 0.023 7.9E-07 56.7 6.1 27 508-534 22-48 (235)
174 1u0j_A DNA replication protein 95.1 0.016 5.5E-07 61.5 4.8 81 510-607 105-199 (267)
175 1p9r_A General secretion pathw 95.1 0.072 2.5E-06 60.0 10.4 87 507-596 165-263 (418)
176 1w36_D RECD, exodeoxyribonucle 94.8 0.061 2.1E-06 63.3 9.2 99 486-594 151-289 (608)
177 3kl4_A SRP54, signal recogniti 94.8 0.046 1.6E-06 61.9 7.8 98 509-606 97-222 (433)
178 3vkg_A Dynein heavy chain, cyt 94.6 0.056 1.9E-06 74.0 9.2 87 513-606 608-715 (3245)
179 1gvn_B Zeta; postsegregational 94.5 0.1 3.5E-06 55.5 9.4 35 509-546 33-67 (287)
180 2i3b_A HCR-ntpase, human cance 94.5 0.039 1.3E-06 55.3 5.6 24 511-534 3-26 (189)
181 2w58_A DNAI, primosome compone 94.4 0.032 1.1E-06 55.2 4.9 42 73-114 36-81 (202)
182 3dm5_A SRP54, signal recogniti 94.4 0.13 4.6E-06 58.3 10.5 98 509-606 100-223 (443)
183 3a4m_A L-seryl-tRNA(SEC) kinas 94.3 0.086 2.9E-06 54.9 8.2 92 511-606 6-109 (260)
184 2b8t_A Thymidine kinase; deoxy 94.2 0.17 5.7E-06 52.3 9.9 94 509-606 12-124 (223)
185 3c8u_A Fructokinase; YP_612366 94.2 0.034 1.2E-06 55.8 4.4 52 491-544 6-59 (208)
186 3sfz_A APAF-1, apoptotic pepti 94.1 0.11 3.9E-06 64.6 10.1 108 486-606 126-265 (1249)
187 2px0_A Flagellar biosynthesis 94.1 0.42 1.4E-05 51.1 13.2 96 508-603 104-220 (296)
188 3lw7_A Adenylate kinase relate 94.1 0.053 1.8E-06 51.3 5.5 85 511-606 3-111 (179)
189 2oap_1 GSPE-2, type II secreti 94.1 0.057 2E-06 62.4 6.7 81 511-596 262-359 (511)
190 3a8t_A Adenylate isopentenyltr 93.8 0.067 2.3E-06 58.7 6.2 79 85-168 38-136 (339)
191 3crm_A TRNA delta(2)-isopenten 93.7 0.092 3.1E-06 57.2 7.0 62 511-577 7-69 (323)
192 1z6t_A APAF-1, apoptotic prote 93.6 0.11 3.8E-06 60.1 7.9 43 69-111 127-171 (591)
193 1j8m_F SRP54, signal recogniti 93.6 0.077 2.6E-06 57.0 6.1 38 509-546 98-135 (297)
194 2ehv_A Hypothetical protein PH 93.4 0.052 1.8E-06 55.0 4.3 24 508-531 29-52 (251)
195 2z4s_A Chromosomal replication 93.4 0.091 3.1E-06 59.3 6.6 91 75-177 117-209 (440)
196 2zr9_A Protein RECA, recombina 93.3 0.15 5E-06 56.0 7.9 72 509-580 61-152 (349)
197 1n0w_A DNA repair protein RAD5 93.2 0.14 4.8E-06 51.6 7.2 72 508-579 23-131 (243)
198 1rz3_A Hypothetical protein rb 93.2 0.1 3.5E-06 52.0 6.0 56 491-547 5-60 (201)
199 1qhx_A CPT, protein (chloramph 93.0 0.053 1.8E-06 52.3 3.5 33 511-546 5-37 (178)
200 2xxa_A Signal recognition part 93.0 0.23 7.7E-06 56.2 9.1 98 509-606 100-224 (433)
201 1nks_A Adenylate kinase; therm 93.0 0.05 1.7E-06 52.7 3.2 36 511-546 3-38 (194)
202 1sxj_C Activator 1 40 kDa subu 92.9 0.24 8.1E-06 53.4 8.8 95 70-175 29-123 (340)
203 3cmu_A Protein RECA, recombina 92.8 0.14 4.6E-06 67.7 7.7 69 509-577 1427-1515(2050)
204 2r8r_A Sensor protein; KDPD, P 92.7 0.17 5.7E-06 52.6 6.8 93 509-606 6-125 (228)
205 1sxj_E Activator 1 40 kDa subu 92.7 0.14 4.8E-06 55.0 6.5 43 70-112 18-61 (354)
206 2cvh_A DNA repair and recombin 92.7 0.15 5E-06 50.6 6.2 36 508-546 19-54 (220)
207 3trf_A Shikimate kinase, SK; a 92.7 0.064 2.2E-06 52.1 3.5 23 511-533 7-29 (185)
208 2ffh_A Protein (FFH); SRP54, s 92.6 0.36 1.2E-05 54.5 10.0 39 509-547 98-136 (425)
209 3ec2_A DNA replication protein 92.5 0.045 1.6E-06 53.2 2.1 28 85-112 36-63 (180)
210 3uie_A Adenylyl-sulfate kinase 92.4 0.11 3.7E-06 51.6 4.9 41 506-546 22-62 (200)
211 2ze6_A Isopentenyl transferase 92.4 0.078 2.7E-06 55.2 4.0 31 511-544 3-33 (253)
212 3kb2_A SPBC2 prophage-derived 92.2 0.068 2.3E-06 50.9 3.0 23 511-533 3-25 (173)
213 2vhj_A Ntpase P4, P4; non- hyd 92.2 0.087 3E-06 57.5 4.0 76 86-177 122-197 (331)
214 3vaa_A Shikimate kinase, SK; s 92.1 0.092 3.1E-06 52.1 3.9 24 510-533 26-49 (199)
215 1m7g_A Adenylylsulfate kinase; 91.9 0.071 2.4E-06 53.4 2.8 57 486-545 5-62 (211)
216 3hr8_A Protein RECA; alpha and 91.9 0.38 1.3E-05 53.1 8.8 73 508-580 60-152 (356)
217 3f9v_A Minichromosome maintena 91.9 0.037 1.3E-06 65.1 0.7 24 89-112 329-352 (595)
218 3a8t_A Adenylate isopentenyltr 91.9 0.062 2.1E-06 58.9 2.5 34 510-546 41-74 (339)
219 2yvu_A Probable adenylyl-sulfa 91.8 0.11 3.9E-06 50.6 4.2 39 506-544 10-48 (186)
220 1kht_A Adenylate kinase; phosp 91.8 0.079 2.7E-06 51.3 3.0 23 511-533 5-27 (192)
221 3e70_C DPA, signal recognition 91.7 0.69 2.3E-05 50.3 10.6 30 507-536 127-156 (328)
222 2pez_A Bifunctional 3'-phospho 91.7 0.12 4.1E-06 50.1 4.1 37 508-544 4-40 (179)
223 2rhm_A Putative kinase; P-loop 91.5 0.1 3.5E-06 50.7 3.5 24 510-533 6-29 (193)
224 2gza_A Type IV secretion syste 91.5 0.34 1.2E-05 53.2 8.0 83 509-596 175-278 (361)
225 3nh6_A ATP-binding cassette SU 91.5 0.38 1.3E-05 51.8 8.2 28 507-534 78-105 (306)
226 1u94_A RECA protein, recombina 91.4 0.35 1.2E-05 53.3 7.8 72 509-580 63-154 (356)
227 2qmh_A HPR kinase/phosphorylas 91.3 0.084 2.9E-06 53.9 2.6 33 510-546 35-67 (205)
228 3t61_A Gluconokinase; PSI-biol 91.1 0.14 4.6E-06 50.8 3.9 23 511-533 20-42 (202)
229 2j37_W Signal recognition part 91.0 0.69 2.4E-05 53.3 10.2 98 509-606 101-224 (504)
230 1xp8_A RECA protein, recombina 91.0 0.56 1.9E-05 51.8 9.1 70 510-579 75-164 (366)
231 2yhs_A FTSY, cell division pro 91.0 0.44 1.5E-05 54.8 8.4 29 508-536 292-320 (503)
232 1sky_E F1-ATPase, F1-ATP synth 90.9 0.82 2.8E-05 52.2 10.4 36 78-113 141-177 (473)
233 3foz_A TRNA delta(2)-isopenten 90.9 0.11 3.9E-06 56.3 3.2 33 511-546 12-44 (316)
234 1knq_A Gluconate kinase; ALFA/ 90.8 0.19 6.4E-06 48.4 4.5 34 509-547 8-41 (175)
235 1vt4_I APAF-1 related killer D 90.7 0.6 2.1E-05 58.3 9.7 42 487-531 131-172 (1221)
236 2plr_A DTMP kinase, probable t 90.6 0.12 4.2E-06 50.8 3.0 24 510-533 5-28 (213)
237 1zp6_A Hypothetical protein AT 90.6 0.12 4E-06 50.4 2.8 35 509-546 9-43 (191)
238 1xx6_A Thymidine kinase; NESG, 90.6 0.33 1.1E-05 48.7 6.1 89 511-605 10-115 (191)
239 3tau_A Guanylate kinase, GMP k 90.6 0.12 4.2E-06 51.8 3.0 25 509-533 8-32 (208)
240 4eun_A Thermoresistant glucoki 90.5 0.18 6E-06 50.1 4.1 34 509-547 29-62 (200)
241 2jaq_A Deoxyguanosine kinase; 90.5 0.13 4.3E-06 50.4 3.0 23 511-533 2-24 (205)
242 1ly1_A Polynucleotide kinase; 90.5 0.12 4.1E-06 49.5 2.7 31 511-545 4-34 (181)
243 1odf_A YGR205W, hypothetical 3 90.5 0.3 1E-05 52.2 6.1 43 492-534 12-56 (290)
244 3tqc_A Pantothenate kinase; bi 90.4 0.26 8.9E-06 53.6 5.6 59 475-534 59-117 (321)
245 1zu4_A FTSY; GTPase, signal re 90.4 0.46 1.6E-05 51.5 7.5 72 475-546 54-142 (320)
246 1x6v_B Bifunctional 3'-phospho 90.4 0.13 4.3E-06 60.9 3.3 61 484-544 26-87 (630)
247 2qgz_A Helicase loader, putati 90.4 0.11 3.6E-06 56.0 2.5 26 87-112 152-177 (308)
248 1kag_A SKI, shikimate kinase I 90.3 0.13 4.5E-06 49.2 2.9 23 511-533 6-28 (173)
249 1kgd_A CASK, peripheral plasma 90.3 0.13 4.5E-06 50.3 3.0 24 510-533 6-29 (180)
250 3iij_A Coilin-interacting nucl 90.3 0.14 4.7E-06 49.7 3.0 23 511-533 13-35 (180)
251 3exa_A TRNA delta(2)-isopenten 90.2 0.13 4.5E-06 55.9 3.0 33 511-546 5-37 (322)
252 2v3c_C SRP54, signal recogniti 90.2 0.82 2.8E-05 51.6 9.7 36 510-545 100-135 (432)
253 2p5t_B PEZT; postsegregational 90.2 0.24 8.3E-06 51.2 5.0 36 509-547 32-67 (253)
254 2qor_A Guanylate kinase; phosp 90.1 0.13 4.4E-06 51.2 2.7 24 510-533 13-36 (204)
255 2a5y_B CED-4; apoptosis; HET: 90.1 0.6 2E-05 53.9 8.6 40 70-109 132-174 (549)
256 3cm0_A Adenylate kinase; ATP-b 90.0 0.15 5.1E-06 49.4 3.0 31 511-546 6-36 (186)
257 2r2a_A Uncharacterized protein 90.0 0.48 1.6E-05 47.8 6.8 97 511-607 7-132 (199)
258 3b9q_A Chloroplast SRP recepto 89.9 0.37 1.3E-05 51.7 6.2 28 509-536 100-127 (302)
259 1zak_A Adenylate kinase; ATP:A 89.9 0.15 5.1E-06 51.3 3.0 31 511-546 7-37 (222)
260 2c95_A Adenylate kinase 1; tra 89.9 0.15 5.2E-06 49.6 3.0 24 510-533 10-33 (196)
261 3tr0_A Guanylate kinase, GMP k 89.9 0.17 5.9E-06 49.7 3.4 25 509-533 7-31 (205)
262 1a5t_A Delta prime, HOLB; zinc 89.9 0.85 2.9E-05 49.1 9.1 146 72-255 8-168 (334)
263 1e6c_A Shikimate kinase; phosp 89.8 0.16 5.4E-06 48.5 3.0 22 512-533 5-26 (173)
264 1y63_A LMAJ004144AAA protein; 89.8 0.16 5.4E-06 49.8 3.0 34 510-547 11-44 (184)
265 1tev_A UMP-CMP kinase; ploop, 89.8 0.16 5.4E-06 49.2 3.0 31 511-546 5-35 (196)
266 1via_A Shikimate kinase; struc 89.8 0.16 5.5E-06 49.0 3.0 22 512-533 7-28 (175)
267 2r44_A Uncharacterized protein 89.7 0.3 1E-05 52.1 5.4 40 70-111 31-70 (331)
268 2bwj_A Adenylate kinase 5; pho 89.7 0.16 5.5E-06 49.6 3.0 32 511-547 14-45 (199)
269 1zuh_A Shikimate kinase; alpha 89.6 0.18 6.2E-06 48.2 3.2 24 510-533 8-31 (168)
270 2z0h_A DTMP kinase, thymidylat 89.4 0.18 6E-06 49.2 3.0 22 512-533 3-24 (197)
271 2cdn_A Adenylate kinase; phosp 89.4 0.17 6E-06 49.9 3.0 24 510-533 21-44 (201)
272 1zd8_A GTP:AMP phosphotransfer 89.3 0.16 5.6E-06 51.3 2.7 24 510-533 8-31 (227)
273 3gd7_A Fusion complex of cysti 89.3 0.73 2.5E-05 51.3 8.2 48 558-607 165-213 (390)
274 1aky_A Adenylate kinase; ATP:A 89.2 0.21 7.2E-06 50.1 3.5 24 510-533 5-28 (220)
275 1qf9_A UMP/CMP kinase, protein 89.2 0.19 6.4E-06 48.6 3.0 23 511-533 8-30 (194)
276 2pbr_A DTMP kinase, thymidylat 89.2 0.22 7.5E-06 48.3 3.5 22 512-533 3-24 (195)
277 1g5t_A COB(I)alamin adenosyltr 89.2 0.21 7E-06 50.7 3.3 99 509-608 28-163 (196)
278 2wwf_A Thymidilate kinase, put 89.1 0.19 6.4E-06 49.7 3.0 24 510-533 11-34 (212)
279 1ak2_A Adenylate kinase isoenz 89.1 0.18 6.3E-06 51.3 3.0 24 510-533 17-40 (233)
280 2pt5_A Shikimate kinase, SK; a 89.1 0.19 6.6E-06 47.8 3.0 22 512-533 3-24 (168)
281 3rlf_A Maltose/maltodextrin im 89.0 0.66 2.3E-05 51.6 7.5 35 558-593 143-178 (381)
282 2vli_A Antibiotic resistance p 88.9 0.15 5.1E-06 49.2 2.0 23 511-533 7-29 (183)
283 4b3f_X DNA-binding protein smu 88.8 0.42 1.4E-05 56.4 6.2 69 511-585 207-275 (646)
284 2j41_A Guanylate kinase; GMP, 88.8 0.2 7E-06 49.2 3.0 26 510-535 7-32 (207)
285 3fb4_A Adenylate kinase; psych 88.7 0.21 7.2E-06 49.8 3.0 22 512-533 3-24 (216)
286 1nn5_A Similar to deoxythymidy 88.6 0.26 8.9E-06 48.7 3.6 24 510-533 10-33 (215)
287 3be4_A Adenylate kinase; malar 88.5 0.21 7.3E-06 50.2 3.0 23 511-533 7-29 (217)
288 1gtv_A TMK, thymidylate kinase 88.5 0.15 5.1E-06 50.5 1.8 23 511-533 2-24 (214)
289 3p32_A Probable GTPase RV1496/ 88.4 1.4 4.7E-05 48.1 9.5 38 508-545 78-117 (355)
290 1e4v_A Adenylate kinase; trans 88.4 0.22 7.6E-06 49.8 3.0 22 512-533 3-24 (214)
291 2xb4_A Adenylate kinase; ATP-b 88.4 0.22 7.5E-06 50.5 3.0 29 512-545 3-31 (223)
292 2v54_A DTMP kinase, thymidylat 88.4 0.19 6.5E-06 49.3 2.4 24 510-533 5-28 (204)
293 2iyv_A Shikimate kinase, SK; t 88.4 0.23 8E-06 48.1 3.0 22 512-533 5-26 (184)
294 3d3q_A TRNA delta(2)-isopenten 88.3 0.24 8.2E-06 54.3 3.4 31 511-544 9-39 (340)
295 3a00_A Guanylate kinase, GMP k 88.3 0.21 7.3E-06 48.9 2.7 23 511-533 3-25 (186)
296 3tui_C Methionine import ATP-b 88.3 0.92 3.1E-05 50.2 8.0 35 558-593 173-208 (366)
297 3dl0_A Adenylate kinase; phosp 88.3 0.22 7.4E-06 49.7 2.8 22 512-533 3-24 (216)
298 2kjq_A DNAA-related protein; s 88.2 0.57 1.9E-05 44.7 5.6 39 86-131 35-73 (149)
299 1htw_A HI0065; nucleotide-bind 88.2 0.37 1.3E-05 46.8 4.3 32 507-539 31-62 (158)
300 2bbw_A Adenylate kinase 4, AK4 88.1 0.25 8.7E-06 50.6 3.2 24 510-533 28-51 (246)
301 2og2_A Putative signal recogni 88.0 0.58 2E-05 51.6 6.2 29 508-536 156-184 (359)
302 3def_A T7I23.11 protein; chlor 88.0 1.3 4.4E-05 45.9 8.6 101 507-607 34-162 (262)
303 2bdt_A BH3686; alpha-beta prot 87.9 0.27 9.2E-06 48.0 3.2 23 511-533 4-26 (189)
304 2ga8_A Hypothetical 39.9 kDa p 87.9 0.6 2.1E-05 51.5 6.2 44 490-533 5-48 (359)
305 1ukz_A Uridylate kinase; trans 87.7 0.25 8.5E-06 48.7 2.8 32 510-546 16-47 (203)
306 3crm_A TRNA delta(2)-isopenten 87.5 1.2 4E-05 48.5 8.1 24 88-111 6-29 (323)
307 3eph_A TRNA isopentenyltransfe 87.5 0.35 1.2E-05 54.2 4.1 33 511-546 4-36 (409)
308 3trf_A Shikimate kinase, SK; a 87.4 0.82 2.8E-05 44.1 6.3 34 86-129 4-37 (185)
309 1lvg_A Guanylate kinase, GMP k 87.4 0.26 9E-06 49.1 2.8 24 510-533 5-28 (198)
310 3sr0_A Adenylate kinase; phosp 87.1 0.3 1E-05 49.5 3.0 30 512-546 3-32 (206)
311 1g41_A Heat shock protein HSLU 87.0 0.91 3.1E-05 51.5 7.2 71 86-175 49-120 (444)
312 1c9k_A COBU, adenosylcobinamid 87.0 0.33 1.1E-05 48.5 3.2 32 512-547 2-33 (180)
313 1in4_A RUVB, holliday junction 86.9 1.6 5.5E-05 46.9 8.9 24 88-111 52-75 (334)
314 3zvl_A Bifunctional polynucleo 86.9 1.1 3.6E-05 50.2 7.6 84 510-605 259-345 (416)
315 3ney_A 55 kDa erythrocyte memb 86.7 0.3 1E-05 49.5 2.7 24 510-533 20-43 (197)
316 1m8p_A Sulfate adenylyltransfe 86.6 0.49 1.7E-05 55.4 4.8 56 487-544 374-432 (573)
317 1svm_A Large T antigen; AAA+ f 86.6 1 3.4E-05 50.0 7.1 28 507-534 167-194 (377)
318 2p6r_A Afuhel308 helicase; pro 86.6 2.6 8.8E-05 50.0 11.2 32 486-527 27-58 (702)
319 2gks_A Bifunctional SAT/APS ki 86.6 0.63 2.1E-05 54.1 5.7 50 495-544 356-407 (546)
320 1vma_A Cell division protein F 86.5 1.3 4.3E-05 47.7 7.7 36 509-544 104-139 (306)
321 1v5w_A DMC1, meiotic recombina 86.4 0.95 3.3E-05 49.2 6.7 26 508-533 121-146 (343)
322 4gp7_A Metallophosphoesterase; 86.3 0.52 1.8E-05 45.6 4.2 20 509-528 9-28 (171)
323 3lxx_A GTPase IMAP family memb 86.1 0.75 2.6E-05 46.7 5.4 98 509-606 29-155 (239)
324 3tlx_A Adenylate kinase 2; str 86.1 0.78 2.7E-05 47.2 5.5 33 509-546 29-61 (243)
325 3nwj_A ATSK2; P loop, shikimat 86.0 0.5 1.7E-05 49.4 4.1 43 488-533 30-72 (250)
326 3nbx_X ATPase RAVA; AAA+ ATPas 85.8 0.42 1.4E-05 55.0 3.7 41 70-112 26-66 (500)
327 1znw_A Guanylate kinase, GMP k 85.8 0.42 1.4E-05 47.7 3.3 26 508-533 19-44 (207)
328 3asz_A Uridine kinase; cytidin 85.7 0.48 1.6E-05 46.9 3.7 25 509-533 6-30 (211)
329 3kta_A Chromosome segregation 85.7 0.47 1.6E-05 45.8 3.5 29 510-538 27-55 (182)
330 3cr8_A Sulfate adenylyltranfer 85.7 1 3.6E-05 52.4 7.0 67 478-546 335-407 (552)
331 2i1q_A DNA repair and recombin 85.6 0.78 2.7E-05 49.0 5.5 26 508-533 97-122 (322)
332 4eaq_A DTMP kinase, thymidylat 85.6 0.5 1.7E-05 48.4 3.8 26 509-534 26-51 (229)
333 1cke_A CK, MSSA, protein (cyti 85.4 0.41 1.4E-05 47.8 3.0 23 511-533 7-29 (227)
334 2z43_A DNA repair and recombin 85.3 1.1 3.7E-05 48.2 6.4 25 509-533 107-131 (324)
335 1sq5_A Pantothenate kinase; P- 85.3 1.2 4.1E-05 47.5 6.8 41 508-548 79-121 (308)
336 3fht_A ATP-dependent RNA helic 85.3 1.3 4.4E-05 47.9 7.1 112 487-606 50-209 (412)
337 2if2_A Dephospho-COA kinase; a 85.2 0.45 1.5E-05 46.9 3.1 21 511-531 3-23 (204)
338 3sfz_A APAF-1, apoptotic pepti 85.1 1.9 6.5E-05 53.6 9.4 49 69-117 127-179 (1249)
339 1z6g_A Guanylate kinase; struc 84.9 0.42 1.4E-05 48.4 2.8 25 509-533 23-47 (218)
340 3vaa_A Shikimate kinase, SK; s 84.9 1.4 4.9E-05 43.3 6.7 34 86-129 24-57 (199)
341 1tf7_A KAIC; homohexamer, hexa 84.8 1.1 3.7E-05 51.6 6.5 38 507-544 279-316 (525)
342 3umf_A Adenylate kinase; rossm 84.8 0.44 1.5E-05 48.8 2.9 30 511-545 31-60 (217)
343 3qf4_A ABC transporter, ATP-bi 84.8 1.4 4.9E-05 51.4 7.6 48 558-606 489-537 (587)
344 1g8f_A Sulfate adenylyltransfe 84.7 0.71 2.4E-05 53.3 4.9 45 487-534 374-420 (511)
345 4a74_A DNA repair and recombin 84.0 0.9 3.1E-05 45.1 4.8 27 507-533 23-49 (231)
346 3io5_A Recombination and repai 84.0 1.2 4.1E-05 48.5 6.0 74 506-579 25-123 (333)
347 2dr3_A UPF0273 protein PH0284; 84.0 0.75 2.6E-05 46.2 4.2 37 508-544 22-58 (247)
348 3cmw_A Protein RECA, recombina 83.9 1.6 5.4E-05 57.1 8.0 71 510-580 733-823 (1706)
349 3cio_A ETK, tyrosine-protein k 83.7 1.4 4.9E-05 46.8 6.5 57 491-547 86-143 (299)
350 3cmw_A Protein RECA, recombina 83.6 1.1 3.8E-05 58.5 6.4 67 511-577 1084-1170(1706)
351 1s96_A Guanylate kinase, GMP k 83.5 0.59 2E-05 47.7 3.2 25 509-533 16-40 (219)
352 3lnc_A Guanylate kinase, GMP k 83.4 0.45 1.5E-05 48.2 2.3 25 509-533 27-52 (231)
353 3ney_A 55 kDa erythrocyte memb 83.3 2.1 7.2E-05 43.1 7.2 27 86-112 18-44 (197)
354 1jjv_A Dephospho-COA kinase; P 83.3 0.48 1.6E-05 46.8 2.4 21 511-531 4-24 (206)
355 3ice_A Transcription terminati 83.1 5.1 0.00017 44.9 10.6 41 73-113 159-200 (422)
356 3bfv_A CAPA1, CAPB2, membrane 83.1 1.5 5.1E-05 46.0 6.2 57 491-547 64-121 (271)
357 3ake_A Cytidylate kinase; CMP 83.0 0.66 2.3E-05 45.4 3.2 23 511-533 4-26 (208)
358 1ex7_A Guanylate kinase; subst 83.0 0.56 1.9E-05 46.9 2.7 22 512-533 4-25 (186)
359 1h65_A Chloroplast outer envel 83.0 3.1 0.00011 43.1 8.6 28 506-533 36-63 (270)
360 1vht_A Dephospho-COA kinase; s 82.9 0.63 2.2E-05 46.4 3.1 22 510-531 5-26 (218)
361 4edh_A DTMP kinase, thymidylat 82.8 0.62 2.1E-05 47.4 3.0 26 510-535 7-32 (213)
362 3foz_A TRNA delta(2)-isopenten 82.7 2.8 9.4E-05 45.5 8.1 22 90-111 13-34 (316)
363 2hf9_A Probable hydrogenase ni 82.6 2.2 7.4E-05 42.3 7.0 29 508-536 37-65 (226)
364 1ltq_A Polynucleotide kinase; 82.6 0.61 2.1E-05 48.9 2.9 32 511-546 4-35 (301)
365 3eph_A TRNA isopentenyltransfe 82.5 2.4 8.1E-05 47.6 7.8 76 88-169 3-98 (409)
366 4a82_A Cystic fibrosis transme 82.4 1.3 4.4E-05 51.6 5.9 48 558-606 487-535 (578)
367 3lxw_A GTPase IMAP family memb 82.3 1.3 4.6E-05 45.5 5.4 98 508-605 20-147 (247)
368 1uf9_A TT1252 protein; P-loop, 82.2 0.69 2.4E-05 45.1 3.0 23 510-532 9-31 (203)
369 3v9p_A DTMP kinase, thymidylat 82.2 0.61 2.1E-05 48.1 2.7 25 509-533 25-49 (227)
370 2gno_A DNA polymerase III, gam 82.1 3.6 0.00012 44.0 8.8 90 75-175 6-95 (305)
371 3exa_A TRNA delta(2)-isopenten 82.0 1.7 5.9E-05 47.2 6.3 75 88-168 4-98 (322)
372 1ny5_A Transcriptional regulat 81.9 2.2 7.4E-05 47.1 7.2 57 70-133 141-199 (387)
373 2j9r_A Thymidine kinase; TK1, 81.8 1.4 4.9E-05 45.1 5.2 93 509-606 27-136 (214)
374 1w4r_A Thymidine kinase; type 81.7 2.3 7.8E-05 43.0 6.6 83 509-595 19-118 (195)
375 2qt1_A Nicotinamide riboside k 81.6 0.68 2.3E-05 45.8 2.7 35 509-547 21-55 (207)
376 2ocp_A DGK, deoxyguanosine kin 81.5 0.67 2.3E-05 47.2 2.7 24 511-534 4-27 (241)
377 1ewq_A DNA mismatch repair pro 81.4 2.2 7.6E-05 51.6 7.6 24 511-534 578-601 (765)
378 3hjn_A DTMP kinase, thymidylat 81.4 0.76 2.6E-05 46.0 3.0 24 512-535 3-26 (197)
379 3thx_B DNA mismatch repair pro 81.4 2.8 9.7E-05 51.7 8.6 98 510-607 674-795 (918)
380 1yrb_A ATP(GTP)binding protein 81.3 1.5 5.2E-05 44.6 5.3 40 506-546 11-50 (262)
381 1p5z_B DCK, deoxycytidine kina 81.3 0.32 1.1E-05 50.4 0.2 27 508-534 23-49 (263)
382 2jeo_A Uridine-cytidine kinase 81.2 0.98 3.3E-05 46.2 3.9 25 509-533 25-49 (245)
383 4hlc_A DTMP kinase, thymidylat 81.2 0.76 2.6E-05 46.4 3.0 24 511-534 4-27 (205)
384 3dzd_A Transcriptional regulat 81.0 1.3 4.4E-05 48.7 4.9 51 74-133 140-190 (368)
385 3thx_A DNA mismatch repair pro 80.9 2.1 7.3E-05 52.8 7.3 24 510-533 663-686 (934)
386 3la6_A Tyrosine-protein kinase 80.8 2.6 9E-05 44.6 7.1 59 490-548 73-132 (286)
387 1rj9_A FTSY, signal recognitio 80.8 1.5 5.1E-05 47.1 5.2 31 509-539 102-132 (304)
388 4dzz_A Plasmid partitioning pr 80.7 1.3 4.4E-05 43.2 4.4 36 512-547 4-40 (206)
389 1g8p_A Magnesium-chelatase 38 80.7 1 3.5E-05 47.9 3.9 44 70-113 28-71 (350)
390 2iut_A DNA translocase FTSK; n 80.5 6 0.00021 46.2 10.5 42 565-606 341-386 (574)
391 3r20_A Cytidylate kinase; stru 80.5 0.82 2.8E-05 47.4 3.0 32 511-547 11-42 (233)
392 2orv_A Thymidine kinase; TP4A 80.5 4.9 0.00017 41.7 8.7 90 510-606 19-124 (234)
393 2ius_A DNA translocase FTSK; n 80.3 3.5 0.00012 47.5 8.5 42 565-606 295-340 (512)
394 4e22_A Cytidylate kinase; P-lo 80.2 0.98 3.4E-05 46.7 3.5 25 509-533 27-51 (252)
395 2wsm_A Hydrogenase expression/ 80.0 2.5 8.7E-05 41.7 6.4 28 509-536 30-57 (221)
396 3cmu_A Protein RECA, recombina 80.0 3.5 0.00012 54.8 9.2 71 510-580 733-823 (2050)
397 3b6e_A Interferon-induced heli 79.9 0.8 2.7E-05 44.9 2.6 38 487-534 36-73 (216)
398 2f1r_A Molybdopterin-guanine d 79.8 1 3.6E-05 44.2 3.3 36 511-546 4-41 (171)
399 1zj6_A ADP-ribosylation factor 79.7 1.2 4.1E-05 42.8 3.7 33 75-108 5-37 (187)
400 4f4c_A Multidrug resistance pr 79.6 2.9 0.0001 53.5 8.2 48 558-606 1227-1275(1321)
401 2gk6_A Regulator of nonsense t 79.5 2.2 7.4E-05 50.2 6.5 25 511-535 197-221 (624)
402 1nrj_B SR-beta, signal recogni 79.3 2.6 9.1E-05 41.4 6.2 30 507-536 10-39 (218)
403 3lv8_A DTMP kinase, thymidylat 79.1 0.96 3.3E-05 46.9 3.0 25 510-534 28-52 (236)
404 3aez_A Pantothenate kinase; tr 79.1 1.2 4.1E-05 48.0 3.8 28 507-534 88-115 (312)
405 4tmk_A Protein (thymidylate ki 79.0 0.98 3.4E-05 46.0 2.9 25 510-534 4-28 (213)
406 1f2t_A RAD50 ABC-ATPase; DNA d 79.0 1.2 4.2E-05 42.4 3.5 28 509-536 23-50 (149)
407 3t61_A Gluconokinase; PSI-biol 79.0 3.5 0.00012 40.4 7.0 26 86-111 17-42 (202)
408 3qf4_B Uncharacterized ABC tra 79.0 2.5 8.7E-05 49.4 6.8 47 558-606 501-548 (598)
409 3tmk_A Thymidylate kinase; pho 78.6 1 3.5E-05 46.0 3.0 25 510-534 6-30 (216)
410 2xau_A PRE-mRNA-splicing facto 78.6 7.5 0.00026 46.9 11.0 45 477-530 86-130 (773)
411 2dr3_A UPF0273 protein PH0284; 78.6 9.8 0.00034 37.8 10.3 27 86-112 22-48 (247)
412 2w0m_A SSO2452; RECA, SSPF, un 78.2 9.3 0.00032 37.4 9.9 27 86-112 22-48 (235)
413 2qm8_A GTPase/ATPase; G protei 78.2 4 0.00014 44.2 7.7 40 507-546 53-94 (337)
414 3lxx_A GTPase IMAP family memb 78.2 3.3 0.00011 41.8 6.6 25 86-110 28-52 (239)
415 1uj2_A Uridine-cytidine kinase 78.0 1.1 3.6E-05 46.2 2.9 38 510-548 23-66 (252)
416 3ld9_A DTMP kinase, thymidylat 78.0 1.4 4.9E-05 45.2 3.8 27 508-534 20-46 (223)
417 2iut_A DNA translocase FTSK; n 77.1 8.6 0.00029 44.9 10.4 41 88-131 215-255 (574)
418 4eun_A Thermoresistant glucoki 77.1 5.6 0.00019 39.0 7.8 27 85-111 27-53 (200)
419 3b85_A Phosphate starvation-in 77.0 0.72 2.5E-05 46.7 1.2 23 510-532 23-45 (208)
420 2v9p_A Replication protein E1; 77.0 1.4 4.7E-05 47.5 3.5 27 507-533 124-150 (305)
421 4f4c_A Multidrug resistance pr 76.9 2.8 9.6E-05 53.7 6.9 37 507-544 442-478 (1321)
422 2ged_A SR-beta, signal recogni 76.7 1.8 6.3E-05 41.5 4.0 28 507-534 46-73 (193)
423 1cr0_A DNA primase/helicase; R 76.7 1.9 6.4E-05 45.2 4.4 28 507-534 33-60 (296)
424 3tqf_A HPR(Ser) kinase; transf 76.5 1.2 4.2E-05 44.4 2.7 22 510-531 17-38 (181)
425 2vp4_A Deoxynucleoside kinase; 76.5 0.87 3E-05 46.2 1.7 26 507-532 18-43 (230)
426 1tue_A Replication protein E1; 76.4 2.5 8.5E-05 43.3 5.0 26 86-111 57-82 (212)
427 2wjy_A Regulator of nonsense t 76.2 2.6 9E-05 51.2 6.1 25 511-535 373-397 (800)
428 3e2i_A Thymidine kinase; Zn-bi 76.1 3.1 0.00011 42.8 5.7 85 510-595 28-129 (219)
429 1nlf_A Regulatory protein REPA 76.0 2.4 8.1E-05 44.2 4.9 26 509-534 30-55 (279)
430 1n0w_A DNA repair protein RAD5 76.0 9.4 0.00032 37.9 9.3 85 86-177 23-134 (243)
431 1xjc_A MOBB protein homolog; s 75.9 1.4 4.9E-05 43.4 3.0 37 510-546 5-43 (169)
432 1oix_A RAS-related protein RAB 75.8 1.1 3.9E-05 43.5 2.3 26 510-535 30-55 (191)
433 4ag6_A VIRB4 ATPase, type IV s 75.8 1.8 6.2E-05 47.4 4.2 39 508-546 34-72 (392)
434 1lw7_A Transcriptional regulat 75.4 1.5 5E-05 47.9 3.3 25 509-533 170-194 (365)
435 1ls1_A Signal recognition part 75.3 2.4 8.1E-05 45.1 4.8 38 509-546 98-135 (295)
436 1p6x_A Thymidine kinase; P-loo 75.2 1.1 3.8E-05 48.9 2.2 26 510-535 8-33 (334)
437 2f9l_A RAB11B, member RAS onco 75.1 1.2 4.2E-05 43.4 2.3 26 510-535 6-31 (199)
438 1tq4_A IIGP1, interferon-induc 75.0 2.9 9.9E-05 46.9 5.6 56 474-533 38-93 (413)
439 2cvh_A DNA repair and recombin 74.8 5.4 0.00019 39.0 7.0 24 86-109 19-42 (220)
440 3qf7_A RAD50; ABC-ATPase, ATPa 74.6 1.8 6.2E-05 47.4 3.8 29 509-537 23-51 (365)
441 1a7j_A Phosphoribulokinase; tr 74.6 0.89 3E-05 48.3 1.2 38 511-548 7-44 (290)
442 3tif_A Uncharacterized ABC tra 74.6 1.4 4.8E-05 45.3 2.7 27 508-534 30-56 (235)
443 2h92_A Cytidylate kinase; ross 74.5 1.5 5.2E-05 43.5 2.9 23 511-533 5-27 (219)
444 3iij_A Coilin-interacting nucl 74.3 2.7 9.1E-05 40.4 4.5 26 86-111 10-35 (180)
445 1np6_A Molybdopterin-guanine d 74.0 1.7 5.7E-05 42.8 3.0 38 510-547 7-46 (174)
446 1b0u_A Histidine permease; ABC 73.9 1.5 5E-05 46.0 2.6 28 507-534 30-57 (262)
447 2pcj_A ABC transporter, lipopr 73.6 1.4 4.9E-05 44.8 2.4 27 508-534 29-55 (224)
448 2onk_A Molybdate/tungstate ABC 73.4 1.7 5.7E-05 45.0 2.9 25 510-534 25-49 (240)
449 2cbz_A Multidrug resistance-as 73.4 1.6 5.3E-05 45.0 2.7 34 558-592 137-171 (237)
450 3ug7_A Arsenical pump-driving 73.3 2.8 9.5E-05 45.6 4.8 39 508-546 25-63 (349)
451 4dhe_A Probable GTP-binding pr 72.9 15 0.00051 35.9 9.7 23 509-531 29-51 (223)
452 1mv5_A LMRA, multidrug resista 72.9 1.7 5.9E-05 44.8 2.8 37 507-544 26-62 (243)
453 2xtp_A GTPase IMAP family memb 72.7 3.6 0.00012 42.0 5.3 24 86-109 21-44 (260)
454 2grj_A Dephospho-COA kinase; T 72.7 2.1 7.3E-05 42.6 3.4 34 510-548 13-46 (192)
455 3qks_A DNA double-strand break 72.6 2.1 7.2E-05 42.8 3.4 27 509-535 23-49 (203)
456 3gfo_A Cobalt import ATP-bindi 72.6 1.5 5E-05 46.5 2.3 26 508-533 33-58 (275)
457 3pqc_A Probable GTP-binding pr 72.6 5.2 0.00018 37.9 6.1 25 86-110 22-46 (195)
458 2f6r_A COA synthase, bifunctio 72.5 1.7 5.9E-05 45.7 2.8 22 510-531 76-97 (281)
459 2zu0_C Probable ATP-dependent 72.4 1.9 6.6E-05 45.1 3.2 26 508-533 45-70 (267)
460 3h1t_A Type I site-specific re 72.1 2.9 9.9E-05 48.3 4.9 44 487-535 181-224 (590)
461 2olj_A Amino acid ABC transpor 72.1 1.7 5.8E-05 45.6 2.6 28 507-534 48-75 (263)
462 2www_A Methylmalonic aciduria 71.9 5.7 0.00019 43.2 6.9 27 508-534 73-99 (349)
463 2d2e_A SUFC protein; ABC-ATPas 71.8 2 6.8E-05 44.5 3.0 25 508-532 28-52 (250)
464 1svi_A GTP-binding protein YSX 71.6 5.3 0.00018 38.1 5.9 26 85-110 21-46 (195)
465 2ged_A SR-beta, signal recogni 71.5 2.6 8.9E-05 40.4 3.6 24 86-109 47-70 (193)
466 1q3t_A Cytidylate kinase; nucl 71.5 2 7E-05 43.5 3.0 33 510-547 17-49 (236)
467 2q6t_A DNAB replication FORK h 71.3 9 0.00031 42.9 8.5 78 85-174 198-322 (444)
468 1ji0_A ABC transporter; ATP bi 71.3 1.8 6.1E-05 44.6 2.5 27 508-534 31-57 (240)
469 2ck3_D ATP synthase subunit be 71.3 19 0.00064 41.2 11.1 38 77-114 142-180 (482)
470 2dyk_A GTP-binding protein; GT 71.0 2.1 7.1E-05 39.4 2.7 22 512-533 4-25 (161)
471 2ghi_A Transport protein; mult 71.0 1.9 6.4E-05 45.1 2.7 35 508-544 45-79 (260)
472 2p67_A LAO/AO transport system 71.0 6.8 0.00023 42.3 7.2 40 507-546 54-95 (341)
473 2zts_A Putative uncharacterize 70.7 3.2 0.00011 41.5 4.2 39 508-546 29-70 (251)
474 1e2k_A Thymidine kinase; trans 70.7 1.2 4.1E-05 48.6 1.1 24 511-534 6-29 (331)
475 1vpl_A ABC transporter, ATP-bi 70.7 1.9 6.6E-05 45.0 2.6 27 508-534 40-66 (256)
476 2r2a_A Uncharacterized protein 70.6 1.8 6.2E-05 43.5 2.4 21 90-110 8-28 (199)
477 3g5u_A MCG1178, multidrug resi 70.6 7.2 0.00025 49.8 8.4 27 507-533 414-440 (1284)
478 1g6h_A High-affinity branched- 70.5 1.9 6.4E-05 44.9 2.5 27 508-534 32-58 (257)
479 3d31_A Sulfate/molybdate ABC t 70.4 2.5 8.7E-05 46.2 3.6 27 508-534 25-51 (348)
480 1bif_A 6-phosphofructo-2-kinas 70.2 2.4 8.1E-05 48.0 3.5 34 510-543 40-73 (469)
481 2yz2_A Putative ABC transporte 70.2 2 6.9E-05 45.0 2.7 26 508-533 32-57 (266)
482 2va8_A SSO2462, SKI2-type heli 70.1 13 0.00044 43.9 9.9 40 486-534 32-72 (715)
483 2ixe_A Antigen peptide transpo 70.1 2 6.9E-05 45.2 2.7 28 507-534 43-70 (271)
484 2zj8_A DNA helicase, putative 69.8 12 0.0004 44.4 9.5 108 486-606 25-178 (720)
485 4g1u_C Hemin import ATP-bindin 69.8 1.9 6.7E-05 45.2 2.5 27 508-534 36-62 (266)
486 1of1_A Thymidine kinase; trans 69.8 1.5 5.2E-05 48.6 1.7 25 510-534 50-74 (376)
487 3fvq_A Fe(3+) IONS import ATP- 69.7 2.3 8E-05 46.8 3.2 27 508-534 29-55 (359)
488 2wsm_A Hydrogenase expression/ 69.4 3.3 0.00011 40.9 3.9 41 71-111 14-54 (221)
489 3gmt_A Adenylate kinase; ssgci 69.2 2.4 8.3E-05 43.8 3.0 32 510-546 9-40 (230)
490 2qi9_C Vitamin B12 import ATP- 69.2 2.1 7.1E-05 44.6 2.5 35 508-544 25-59 (249)
491 3g5u_A MCG1178, multidrug resi 69.1 7.1 0.00024 49.9 7.8 48 558-606 1181-1229(1284)
492 1r8s_A ADP-ribosylation factor 69.1 19 0.00066 32.9 9.0 25 512-536 3-27 (164)
493 2hf9_A Probable hydrogenase ni 69.1 3.8 0.00013 40.5 4.4 28 84-111 35-62 (226)
494 1z2a_A RAS-related protein RAB 69.1 2.3 7.9E-05 39.3 2.6 25 510-534 6-30 (168)
495 2r6a_A DNAB helicase, replicat 69.0 12 0.00041 42.0 8.9 82 85-178 201-329 (454)
496 3llm_A ATP-dependent RNA helic 68.9 3.6 0.00012 41.6 4.2 33 487-529 64-96 (235)
497 2ff7_A Alpha-hemolysin translo 68.9 2.1 7.3E-05 44.3 2.5 27 508-534 34-60 (247)
498 2wjg_A FEOB, ferrous iron tran 68.8 2.3 7.9E-05 40.5 2.6 22 510-531 8-29 (188)
499 2ze6_A Isopentenyl transferase 68.8 11 0.00037 38.8 7.9 23 89-111 3-25 (253)
500 2nq2_C Hypothetical ABC transp 68.7 2.1 7.3E-05 44.5 2.5 27 508-534 30-56 (253)
No 1
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=9.2e-52 Score=504.79 Aligned_cols=595 Identities=17% Similarity=0.266 Sum_probs=372.6
Q ss_pred CCcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHH
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLT 148 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rlk 148 (850)
-||++++++++++|+|++++|++|+|+||+|||++++++++++..+++|..|++.+++.++++.+..+...+|+++.+++
T Consensus 173 iGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~ 252 (854)
T 1qvr_A 173 IGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLK 252 (854)
T ss_dssp CSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHH
T ss_pred CCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999887444445999999999
Q ss_pred HHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHH
Q 003070 149 ELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQ 228 (850)
Q Consensus 149 eL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~e 228 (850)
.+++.+.. .++++||||||+|++++++..+| . .++.++|++.+ .+|+++||||||+.
T Consensus 253 ~~~~~~~~---~~~~~iL~IDEi~~l~~~~~~~g-------------~-----~~~~~~L~~~l--~~~~i~~I~at~~~ 309 (854)
T 1qvr_A 253 AVIQEVVQ---SQGEVILFIDELHTVVGAGKAEG-------------A-----VDAGNMLKPAL--ARGELRLIGATTLD 309 (854)
T ss_dssp HHHHHHHT---TCSSEEEEECCC-------------------------------------HHHH--HTTCCCEEEEECHH
T ss_pred HHHHHHHh---cCCCeEEEEecHHHHhccCCccc-------------h-----HHHHHHHHHHH--hCCCeEEEEecCch
Confidence 99999986 25689999999999998875422 1 23468888887 68999999999999
Q ss_pred HHHhhhhcCCcccccccceeeecCCCCcccc---c----------ccccccccccccccCCC-ccccCCCCCCccc-ccc
Q 003070 229 TYMKCQMRQPPLEIQWALQAVSIPSGGLGLS---L----------HSSSVHESRLTFSQNPS-QVWETKPFAIKEE-EDH 293 (850)
Q Consensus 229 eY~K~iekdPaLEr~W~LQ~V~Vps~~~~l~---l----------~~~s~~~~~~~~s~~~s-~v~~~~~l~~~~~-~~~ 293 (850)
+|++ ++.+|+|.+|| |.|.|+.|+..-. + |+..+.+..+......+ .....+++++++. +-+
T Consensus 310 ~~~~-~~~d~aL~rRf--~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lld 386 (854)
T 1qvr_A 310 EYRE-IEKDPALERRF--QPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLID 386 (854)
T ss_dssp HHHH-HTTCTTTCSCC--CCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHH
T ss_pred HHhh-hccCHHHHhCC--ceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHH
Confidence 9999 99999999975 6688877773100 0 11101011000000001 1123455554431 001
Q ss_pred h--------hhcchHhhhhHHHHHHHHhccc----cccCC---CCcCcCcccchhhHHHHHHHHHHHHHHhhhhcccccc
Q 003070 294 K--------LNCCAECTSNYEEEAQLFKSGQ----KKLLP---PWLQPHSSSNANQKDELVEMRRKWNRSCHSLHQGRHT 358 (850)
Q Consensus 294 ~--------~~~c~~c~~~ye~E~~~~~~~~----~~~lP---~wLq~~~~~~~~~~~~~~~L~kkW~~~c~~lh~~~~~ 358 (850)
. ...++.+.+.+++++..+.... ...-+ ..+..........+.++..+..+|...|..++..+..
T Consensus 387 ea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (854)
T 1qvr_A 387 EAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREA 466 (854)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1122344444444333321110 00000 0000000011223455778999999998876643211
Q ss_pred cccccc-ccccccccccccccccc----cCCCCccccccccccCchhhhhcccCCCCCchhhHHHhhcccccccccccCc
Q 003070 359 QSQFSS-NLYNNQSLTGKSCSYAS----TYPWWPSQSSIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGN 433 (850)
Q Consensus 359 ~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~~r~~s~~t~e~~~~~ 433 (850)
...... ... .........|.. .|..+|+... .+......+. . .
T Consensus 467 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~--~------~ 514 (854)
T 1qvr_A 467 QHRLDEVRRE--IELAERQYDLNRAAELRYGELPKLEA----------------------EVEALSEKLR--G------A 514 (854)
T ss_dssp HHHHHHHHHH--HHHHTTTTCHHHHHHHHTTHHHHHHH----------------------HHHHHHHHSS--S------C
T ss_pred HHHHHHHhhh--HHHHHhcccHHHHHHHhhhhhHHHHH----------------------HHHHHHhhhc--c------c
Confidence 000000 000 000000000000 0000000000 0000000000 0 0
Q ss_pred CCCCCCCCccc--ccccccCCCcceeeecccCCCcCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhhhC-----
Q 003070 434 CTRKPQGVEPR--LDSLKSNEGKEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA----- 506 (850)
Q Consensus 434 ~~~~~~~v~~~--~~~~~~~~gi~v~t~l~lg~s~~~~~~~~~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~g----- 506 (850)
.+. ..+++++ ...++.++|+|+. ++...+.+++..|++.|.++|+||++++..|..+|.+.++|
T Consensus 515 ~~~-~~~v~~~~l~~~v~~~~~ip~~--------~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~ 585 (854)
T 1qvr_A 515 RFV-RLEVTEEDIAEIVSRWTGIPVS--------KLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPN 585 (854)
T ss_dssp SSC-CSEECHHHHHHHHHTTSSCHHH--------HTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSS
T ss_pred ccc-cCCcCHHHHHHHHHHHhCCChH--------hhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhcccCCCC
Confidence 000 1112222 2245677887763 23344567788899999999999999999999999999986
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC---------CCCCch-----hhHHHHhhhCCCEEEe
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND---------GVSSHS-----EMLMGTLKNYEKLVVL 572 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~---------~~~~~~-----~~l~e~vr~~P~sVvl 572 (850)
+|.+++||.||+|+|||.+|++||+.+|++...|+++||+++.+ .+++|+ +.|+++++++||+|||
T Consensus 586 ~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~ 665 (854)
T 1qvr_A 586 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVIL 665 (854)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEE
Confidence 56699999999999999999999999999999999999998743 356676 4799999999999999
Q ss_pred eccccccCHHHHHHHHhhhccCc----------cCceEEEEecC-CCchhhhhhhhcccccchhheecccCcccccchhh
Q 003070 573 VEDIDLADPQFIKILADGFETEN----------FGKVIFVLTKG-DSSNYEERIENQDSVINMTLKVNERNQNFDHKRKA 641 (850)
Q Consensus 573 ldeiekA~~~v~~~l~q~~d~G~----------l~n~Iii~Tsn-~~~~~~e~~~~~~~~~~l~l~~~~~~~~~~~krk~ 641 (850)
|||||++|+++++.|+|+||+|+ |+|+||||||| ++..+... . .. + +. .
T Consensus 666 lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~--~-----------~~---~---~~-~ 725 (854)
T 1qvr_A 666 FDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEG--L-----------QK---G---WP-Y 725 (854)
T ss_dssp ESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHH--H-----------HT---T---CC-H
T ss_pred EecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhh--c-----------cc---c---cc-h
Confidence 99999999999999999999997 46999999999 44322110 0 00 0 00 0
Q ss_pred hhhhhccCCCCCccccccccccccccccCCCcccccccCcccccccccccCCcCccCCCCCCCCCCCcccchhhcccCCC
Q 003070 642 EWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPA 721 (850)
Q Consensus 642 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~~~~s~~~lDLNl~a~e~e~~~~~~~~~~~~~~sd~~~e~~~~~~ 721 (850)
+ +-+ ..+.......
T Consensus 726 ~-------------~l~-----------------------------------------------------~~v~~~~~~~ 739 (854)
T 1qvr_A 726 E-------------RIR-----------------------------------------------------DEVFKVLQQH 739 (854)
T ss_dssp H-------------HHH-----------------------------------------------------HHHHHHHHTT
T ss_pred H-------------HHH-----------------------------------------------------HHHHHHHHhh
Confidence 0 000 0000011267
Q ss_pred CCchhhhcccceEeccCCCCCchhHHHHHHHHHHHHHHHHHccCCceEEEeCHHHHHHHHhccCC---cchhHHHHHHHH
Q 003070 722 LSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSGF---FHNSLFEKWLKE 798 (850)
Q Consensus 722 ~~~efLnriD~~vvF~~l~~~~~~l~~~i~~~~~~~~~~~l~~~~~~~l~vd~~~~e~l~~~~~~---~~~r~le~wie~ 798 (850)
|+|+|++|+|.+|+|.|++. .++..++.. +...+.+.++.. ++.+.++++++++|+..+ | .+.|++++.|+.
T Consensus 740 f~~~l~~Rl~~~i~~~pl~~--edi~~i~~~-~l~~~~~~~~~~-~~~~~~~~~a~~~L~~~~-~~~~gn~R~L~~~i~~ 814 (854)
T 1qvr_A 740 FRPEFLNRLDEIVVFRPLTK--EQIRQIVEI-QLSYLRARLAEK-RISLELTEAAKDFLAERG-YDPVFGARPLRRVIQR 814 (854)
T ss_dssp SCHHHHHTCSBCCBCCCCCH--HHHHHHHHH-HHHHHHHHHHTT-TCEEEECHHHHHHHHHHH-CBTTTBTSTHHHHHHH
T ss_pred CCHHHHHhcCeEEeCCCCCH--HHHHHHHHH-HHHHHHHHHHhC-CceEEECHHHHHHHHHcC-CCCCCChHHHHHHHHH
Confidence 99999999999999999987 355444444 445677777655 388999999999999876 5 789999999999
Q ss_pred HHhhHHHHHHhCCCC-CCceEEEe
Q 003070 799 VFQTSLEAVKIGGKG-GGIEIRLC 821 (850)
Q Consensus 799 vl~~~l~~~~~~g~~-~~~~v~L~ 821 (850)
.+.+.+++..+.|+. .+..|++.
T Consensus 815 ~~~~~~~~~i~~~~~~~~~~~~~~ 838 (854)
T 1qvr_A 815 ELETPLAQKILAGEVKEGDRVQVD 838 (854)
T ss_dssp HTHHHHHHHHHHTSSCSSCEEEEE
T ss_pred HHHHHHHHHHHhCcCCCCCEEEEE
Confidence 999999999999875 45566665
No 2
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=6.5e-50 Score=481.99 Aligned_cols=511 Identities=14% Similarity=0.234 Sum_probs=360.1
Q ss_pred CCCcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHH
Q 003070 68 ASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNL 147 (850)
Q Consensus 68 ~~gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rl 147 (850)
+-||++++++++++|+|++++|++|+|+||+|||++++++++++..+.+|..+.+.+++.++++.+..+...+|+||+++
T Consensus 188 ~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l 267 (758)
T 1r6b_X 188 LIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRF 267 (758)
T ss_dssp CCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHH
T ss_pred ccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHH
Confidence 34999999999999999999999999999999999999999999999999999999999999998754455699999999
Q ss_pred HHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccH
Q 003070 148 TELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASY 227 (850)
Q Consensus 148 keL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~ 227 (850)
+.+.+.+.. .++.||||||+|++++++...+ +. +++.++|++++ .+|+++|||+||+
T Consensus 268 ~~~~~~~~~----~~~~iL~IDEi~~l~~~~~~~~------------~~-----~~~~~~L~~~l--~~~~~~~I~at~~ 324 (758)
T 1r6b_X 268 KALLKQLEQ----DTNSILFIDEIHTIIGAGAASG------------GQ-----VDAANLIKPLL--SSGKIRVIGSTTY 324 (758)
T ss_dssp HHHHHHHSS----SSCEEEEETTTTTTTTSCCSSS------------CH-----HHHHHHHSSCS--SSCCCEEEEEECH
T ss_pred HHHHHHHHh----cCCeEEEEechHHHhhcCCCCc------------ch-----HHHHHHHHHHH--hCCCeEEEEEeCc
Confidence 999999986 4579999999999999774311 12 35679999987 6899999999999
Q ss_pred HHHHhhhhcCCcccccccceeeecCCCCccccccccccccc---ccccccCCCccccCCCCCCcccccchhhcchHhhhh
Q 003070 228 QTYMKCQMRQPPLEIQWALQAVSIPSGGLGLSLHSSSVHES---RLTFSQNPSQVWETKPFAIKEEEDHKLNCCAECTSN 304 (850)
Q Consensus 228 eeY~K~iekdPaLEr~W~LQ~V~Vps~~~~l~l~~~s~~~~---~~~~s~~~s~v~~~~~l~~~~~~~~~~~~c~~c~~~ 304 (850)
.+|+++++.||+|.+|| +.|.|+.|+..... .++.. .+...+ ...+. ++.+..+...+.+
T Consensus 325 ~~~~~~~~~d~aL~~Rf--~~i~v~~p~~~e~~---~il~~l~~~~~~~~-------~v~~~-----~~al~~~~~~s~~ 387 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRF--QKIDITEPSIEETV---QIINGLKPKYEAHH-------DVRYT-----AKAVRAAVELAVK 387 (758)
T ss_dssp HHHHCCCCCTTSSGGGE--EEEECCCCCHHHHH---HHHHHHHHHHHHHH-------TCCCC-----HHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCc--eEEEcCCCCHHHHH---HHHHHHHHHHHHhc-------CCCCC-----HHHHHHHHHHhhh
Confidence 99999999999999975 67888877742110 00000 000000 00010 0111111122222
Q ss_pred HHHHHHHHhccccccCCCCcCcCcccchhhHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccCC
Q 003070 305 YEEEAQLFKSGQKKLLPPWLQPHSSSNANQKDELVEMRRKWNRSCHSLHQGRHTQSQFSSNLYNNQSLTGKSCSYASTYP 384 (850)
Q Consensus 305 ye~E~~~~~~~~~~~lP~wLq~~~~~~~~~~~~~~~L~kkW~~~c~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (850)
|.. ...+| +++.++-.. .|...... .... . ..
T Consensus 388 ~i~---------~~~lp--------------~~~i~lld~---a~~~~~~~------~~~~---------~-------~~ 419 (758)
T 1r6b_X 388 YIN---------DRHLP--------------DKAIDVIDE---AGARARLM------PVSK---------R-------KK 419 (758)
T ss_dssp HCT---------TSCTT--------------HHHHHHHHH---HHHHHHHS------SSCC---------C-------CC
T ss_pred hcc---------cccCc--------------hHHHHHHHH---HHHHHhcc------cccc---------c-------CC
Confidence 110 11122 111111111 11111000 0000 0 00
Q ss_pred CCccccccccccCchhhhhcccCCCCCchhhHHHhhcccccccccccCcCCCCCCCCcccccccccCCCcceeeecccCC
Q 003070 385 WWPSQSSIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVEPRLDSLKSNEGKEVKITLALGN 464 (850)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~~r~~s~~t~e~~~~~~~~~~~~v~~~~~~~~~~~gi~v~t~l~lg~ 464 (850)
.+ ....+.. .++.++|+|+.
T Consensus 420 ~v------------------------~~~di~~-----------------------------~~~~~~~ip~~------- 439 (758)
T 1r6b_X 420 TV------------------------NVADIES-----------------------------VVARIARIPEK------- 439 (758)
T ss_dssp SC------------------------CHHHHHH-----------------------------HHHHHSCCCCC-------
T ss_pred cc------------------------CHHHHHH-----------------------------HHHHhcCCCcc-------
Confidence 00 0000110 11223455542
Q ss_pred CcCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhhhC-----CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCc
Q 003070 465 SELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGSTDL 539 (850)
Q Consensus 465 s~~~~~~~~~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~g-----k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~ 539 (850)
.+...+...+..|++.|.+.|+||++|+..|..++...++| +|.+++||.||+|+|||.+|++||+.+ ...
T Consensus 440 -~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l---~~~ 515 (758)
T 1r6b_X 440 -SVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIE 515 (758)
T ss_dssp -CSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH---TCE
T ss_pred -ccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cCC
Confidence 23344567899999999999999999999999999999987 578999999999999999999999999 378
Q ss_pred eEEecCccccC---------CCCCchh-----hHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCcc---------
Q 003070 540 LFHIDMRKRND---------GVSSHSE-----MLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENF--------- 596 (850)
Q Consensus 540 ~i~idms~~~~---------~~~~~~~-----~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l--------- 596 (850)
|+++||++|.+ .++||+| .|++++++.||+|||||||||+|+++++.|+|+||+|++
T Consensus 516 ~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~ 595 (758)
T 1r6b_X 516 LLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKAD 595 (758)
T ss_dssp EEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEE
T ss_pred EEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEe
Confidence 99999999854 3678886 689999999999999999999999999999999999985
Q ss_pred -CceEEEEecC-CCchhhhhhhhcccccchhheecccCcccccchhhhhhhhccCCCCCccccccccccccccccCCCcc
Q 003070 597 -GKVIFVLTKG-DSSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKK 674 (850)
Q Consensus 597 -~n~Iii~Tsn-~~~~~~e~~~~~~~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr 674 (850)
+|+||||||| +...+... . + ||.. . ..+ .
T Consensus 596 ~~~~~iI~tsN~~~~~~~~~------~------~-----g~~~--------~---------~~~---------------~ 626 (758)
T 1r6b_X 596 FRNVVLVMTTNAGVRETERK------S------I-----GLIH--------Q---------DNS---------------T 626 (758)
T ss_dssp CTTEEEEEEECSSCC-----------------------------------------------------------------
T ss_pred cCCeEEEEecCcchhhhhhc------c------c-----Cccc--------c---------chH---------------H
Confidence 6999999999 44322100 0 0 0000 0 000 0
Q ss_pred cccccCcccccccccccCCcCccCCCCCCCCCCCcccchhhcccCCCCCchhhhcccceEeccCCCCCchhHHHHHHHHH
Q 003070 675 DFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKM 754 (850)
Q Consensus 675 ~~~~~~s~~~lDLNl~a~e~e~~~~~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~vvF~~l~~~~~~l~~~i~~~~ 754 (850)
.. ..+....|+|+|++|+|.+|.|.|++. .++..++.. .
T Consensus 627 ------------------------------------~~--~~~~~~~~~~~l~~R~~~~i~~~~l~~--~~~~~i~~~-~ 665 (758)
T 1r6b_X 627 ------------------------------------DA--MEEIKKIFTPEFRNRLDNIIWFDHLST--DVIHQVVDK-F 665 (758)
T ss_dssp -------------------------------------C--HHHHHHHSCHHHHTTCSEEEECCCCCH--HHHHHHHHH-H
T ss_pred ------------------------------------HH--HHHHHHhcCHHHHhhCCcceeeCCCCH--HHHHHHHHH-H
Confidence 00 001124689999999999999999998 355444444 4
Q ss_pred HHHHHHHHccCCceEEEeCHHHHHHHHhcc--CCcchhHHHHHHHHHHhhHHHHHHhCCCC-CCceEEEe
Q 003070 755 KESFDEIFKRQNKVNFSVEERVLEEVLIGS--GFFHNSLFEKWLKEVFQTSLEAVKIGGKG-GGIEIRLC 821 (850)
Q Consensus 755 ~~~~~~~l~~~~~~~l~vd~~~~e~l~~~~--~~~~~r~le~wie~vl~~~l~~~~~~g~~-~~~~v~L~ 821 (850)
...+.+.+... ++.+.++++++++|+..+ +.+++|.+.++|+..+.++|++..+.|+. .+..|++.
T Consensus 666 l~~~~~~~~~~-~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l~~~~~~~~~~~~~ 734 (758)
T 1r6b_X 666 IVELQVQLDQK-GVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVA 734 (758)
T ss_dssp HHHHHHHHHHT-TEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHHHSTTTTCEEEEEE
T ss_pred HHHHHHHHHHC-CcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHHHcCcCCCCCEEEEE
Confidence 45677777655 389999999999999875 34679999999999999999999888875 34455555
No 3
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=2.1e-49 Score=478.06 Aligned_cols=514 Identities=17% Similarity=0.265 Sum_probs=341.1
Q ss_pred CCcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHH
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLT 148 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rlk 148 (850)
-||++++++++++|+|++++|++|+|+||+|||+++++||+++.++++|..|.+.+++.+++ +..++|+||.+++
T Consensus 183 iG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-----g~~~~G~~e~~l~ 257 (758)
T 3pxi_A 183 IGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-----GTKYRGEFEDRLK 257 (758)
T ss_dssp CCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------CTTHH
T ss_pred cCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----cccccchHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999987 3345999999999
Q ss_pred HHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHH
Q 003070 149 ELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQ 228 (850)
Q Consensus 149 eL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~e 228 (850)
.+..+++. .++.||||| +. .+ +.++|++++ .+|+++||||||..
T Consensus 258 ~~~~~~~~----~~~~iLfiD--------~~--------------~~--------~~~~L~~~l--~~~~v~~I~at~~~ 301 (758)
T 3pxi_A 258 KVMDEIRQ----AGNIILFID--------AA--------------ID--------ASNILKPSL--ARGELQCIGATTLD 301 (758)
T ss_dssp HHHHHHHT----CCCCEEEEC--------C------------------------------CCCT--TSSSCEEEEECCTT
T ss_pred HHHHHHHh----cCCEEEEEc--------Cc--------------hh--------HHHHHHHHH--hcCCEEEEeCCChH
Confidence 99999986 568999999 21 12 357888887 68999999999999
Q ss_pred HHHhhhhcCCcccccccceeeecCCCCcccc---ccc--cc-ccccccccccC-------CC-ccccCCCCCCcccccch
Q 003070 229 TYMKCQMRQPPLEIQWALQAVSIPSGGLGLS---LHS--SS-VHESRLTFSQN-------PS-QVWETKPFAIKEEEDHK 294 (850)
Q Consensus 229 eY~K~iekdPaLEr~W~LQ~V~Vps~~~~l~---l~~--~s-~~~~~~~~s~~-------~s-~v~~~~~l~~~~~~~~~ 294 (850)
+|+++++.+|+|.+|| |.|.|+.|+..-. ++. .. ...+.+.++.. .+ .....+++|+++
T Consensus 302 ~~~~~~~~d~al~rRf--~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~a----- 374 (758)
T 3pxi_A 302 EYRKYIEKDAALERRF--QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKA----- 374 (758)
T ss_dssp TTHHHHTTCSHHHHSE--EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHH-----
T ss_pred HHHHHhhccHHHHhhC--cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHH-----
Confidence 9999999999999975 8888888773111 000 00 00000100000 00 011223333222
Q ss_pred hhcchHhhhhHHHHHHHHhccccccCCCCcCcCcccch------------hhHHHHHHHHHHHHHHhhhhcccccccccc
Q 003070 295 LNCCAECTSNYEEEAQLFKSGQKKLLPPWLQPHSSSNA------------NQKDELVEMRRKWNRSCHSLHQGRHTQSQF 362 (850)
Q Consensus 295 ~~~c~~c~~~ye~E~~~~~~~~~~~lP~wLq~~~~~~~------------~~~~~~~~L~kkW~~~c~~lh~~~~~~~~~ 362 (850)
....+++.+.........|..+......-. ...+...+|+.++..+...+.....
T Consensus 375 --------i~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~----- 441 (758)
T 3pxi_A 375 --------IDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKK----- 441 (758)
T ss_dssp --------HHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHS-----
T ss_pred --------HHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 112222222110001223433332210000 0001122333333333332221100
Q ss_pred ccccccccccccccccccccCCCCccccccccccCchhhhhcccCCCCCchhhHHHhhcccccccccccCcCCCCCCCCc
Q 003070 363 SSNLYNNQSLTGKSCSYASTYPWWPSQSSIFLDSNSISFAESAMKPHNSSNSVAKFRRQQSCSTIEFNFGNCTRKPQGVE 442 (850)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~~~~r~~s~~t~e~~~~~~~~~~~~v~ 442 (850)
.|..... .. ...++
T Consensus 442 ----------------------~~~~~~~-------------~~-------------------------------~~~v~ 455 (758)
T 3pxi_A 442 ----------------------SWKEKQG-------------QE-------------------------------NSEVT 455 (758)
T ss_dssp ----------------------GGGHHHH-------------CC----------------------------------CC
T ss_pred ----------------------HHHHhhc-------------cc-------------------------------CcccC
Confidence 0000000 00 00011
Q ss_pred cc-c-cccccCCCcceeeecccCCCcCChhHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhhhC-----CCCeEEEEe
Q 003070 443 PR-L-DSLKSNEGKEVKITLALGNSELSDSAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQ 515 (850)
Q Consensus 443 ~~-~-~~~~~~~gi~v~t~l~lg~s~~~~~~~~~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~g-----k~~~~~lf~ 515 (850)
.. + ..++.++|+|+. .+...+.+.+..|++.|.+.|+||++|+..|+.+|.++++| +|.+++||+
T Consensus 456 ~~~i~~~v~~~~~ip~~--------~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~ 527 (758)
T 3pxi_A 456 VDDIAMVVSSWTGVPVS--------KIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFL 527 (758)
T ss_dssp THHHHHHHHTTC---------------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEE
T ss_pred HHHHHHHHHHHhCCChH--------HhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEE
Confidence 11 1 123455676663 33455556788899999999999999999999999999986 567899999
Q ss_pred cCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCc
Q 003070 516 GNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETEN 595 (850)
Q Consensus 516 Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~ 595 (850)
||+|+|||.+|++||+.+|++...|+++||++|.+......+.++++++++||+||||||||++|+++++.|+++||+|+
T Consensus 528 Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~ 607 (758)
T 3pxi_A 528 GPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGR 607 (758)
T ss_dssp SCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSB
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCe
Confidence 99999999999999999999999999999999865433335789999999999999999999999999999999999998
Q ss_pred c----------CceEEEEecC-CCchhhhhhhhcccccchhheecccCcccccchhhhhhhhccCCCCCccccccccccc
Q 003070 596 F----------GKVIFVLTKG-DSSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVT 664 (850)
Q Consensus 596 l----------~n~Iii~Tsn-~~~~~~e~~~~~~~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~ 664 (850)
+ .|++|||||| +..... . .. .
T Consensus 608 ~~~~~g~~~~~~~~~iI~ttn~~~~~~~----------------------------~---~~----------~------- 639 (758)
T 3pxi_A 608 LTDSKGRTVDFRNTILIMTSNVGASEKD----------------------------K---VM----------G------- 639 (758)
T ss_dssp CC-----CCBCTTCEEEEEESSSTTCCH----------------------------H---HH----------H-------
T ss_pred EEcCCCCEeccCCeEEEEeCCCChhhHH----------------------------H---HH----------H-------
Confidence 6 4899999999 432100 0 00 0
Q ss_pred cccccCCCcccccccCcccccccccccCCcCccCCCCCCCCCCCcccchhhcccCCCCCchhhhcccceEeccCCCCCch
Q 003070 665 IDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDG 744 (850)
Q Consensus 665 ~~~~~~~~kr~~~~~~s~~~lDLNl~a~e~e~~~~~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~vvF~~l~~~~~ 744 (850)
.....|+|+|++|+|.+|.|.|++. .
T Consensus 640 ----------------------------------------------------~~~~~f~p~l~~Rl~~~i~~~~l~~--~ 665 (758)
T 3pxi_A 640 ----------------------------------------------------ELKRAFRPEFINRIDEIIVFHSLEK--K 665 (758)
T ss_dssp ----------------------------------------------------HHHHHSCHHHHTTSSEEEECC--CH--H
T ss_pred ----------------------------------------------------HHHhhCCHHHHhhCCeEEecCCCCH--H
Confidence 0013488999999999999999998 3
Q ss_pred hHHHHHHHHHHHHHHHHHccCCceEEEeCHHHHHHHHhccC-C-cchhHHHHHHHHHHhhHHHHHHhCCCC-CCceEEEe
Q 003070 745 KITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSG-F-FHNSLFEKWLKEVFQTSLEAVKIGGKG-GGIEIRLC 821 (850)
Q Consensus 745 ~l~~~i~~~~~~~~~~~l~~~~~~~l~vd~~~~e~l~~~~~-~-~~~r~le~wie~vl~~~l~~~~~~g~~-~~~~v~L~ 821 (850)
++.+++.. +...+.+.++.. ++.+.++++++++|+..++ | ++.|+++++|+..+.+.+++..+.|.. .+..|++.
T Consensus 666 ~~~~i~~~-~l~~~~~~~~~~-~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~l~~~~~~~~~~~~~ 743 (758)
T 3pxi_A 666 HLTEIVSL-MSDQLTKRLKEQ-DLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLD 743 (758)
T ss_dssp HHHHHHHH-HHHHHHHHHHTT-TCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHHHTTCSCSSSEEEEE
T ss_pred HHHHHHHH-HHHHHHHHHHhC-CCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCCCCCCEEEEE
Confidence 55544444 555677777655 3889999999999988652 3 689999999999999999999999876 45566665
No 4
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.92 E-value=9.5e-24 Score=225.99 Aligned_cols=262 Identities=15% Similarity=0.241 Sum_probs=203.5
Q ss_pred hHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhhhC-----CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEec
Q 003070 470 SAKLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSA-----KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID 544 (850)
Q Consensus 470 ~~~~~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~g-----k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id 544 (850)
.+.+.+..|.+.|.+.++||++++..|..+|...+.+ +|..++||.||+|+|||.+|++||..++.+...++.+|
T Consensus 3 ~~~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 3 GEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp HHHHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred cHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 3567899999999999999999999999999999876 56789999999999999999999999999888999999
Q ss_pred CccccC---------CCCCch-----hhHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCcc----------CceE
Q 003070 545 MRKRND---------GVSSHS-----EMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENF----------GKVI 600 (850)
Q Consensus 545 ms~~~~---------~~~~~~-----~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l----------~n~I 600 (850)
|+.+.. .+++|+ +.+++++++.|+.||||||||++++.+++.|++.|++|.+ +|+|
T Consensus 83 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 162 (311)
T 4fcw_A 83 MTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTV 162 (311)
T ss_dssp GGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEE
T ss_pred cccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcE
Confidence 987632 233443 3799999999999999999999999999999999999985 4999
Q ss_pred EEEecCC-CchhhhhhhhcccccchhheecccCcccccchhhhhhhhccCCCCCccccccccccccccccCCCccccccc
Q 003070 601 FVLTKGD-SSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQ 679 (850)
Q Consensus 601 ii~Tsn~-~~~~~e~~~~~~~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~~~ 679 (850)
||+|||. ...+... . . .. . ..+
T Consensus 163 iI~ttn~~~~~i~~~--~----------~--------~~-------~---------~~~--------------------- 185 (311)
T 4fcw_A 163 IIMTSNLGSPLILEG--L----------Q--------KG-------W---------PYE--------------------- 185 (311)
T ss_dssp EEEEESTTHHHHHTT--T----------T--------SC-------C---------CSS---------------------
T ss_pred EEEecccCHHHHHhh--h----------c--------cc-------c---------cHH---------------------
Confidence 9999994 3222100 0 0 00 0 000
Q ss_pred CcccccccccccCCcCccCCCCCCCCCCCcccchhhcccCCCCCchhhhcccceEeccCCCCCchhHHHHHHHHHHHHHH
Q 003070 680 SSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFD 759 (850)
Q Consensus 680 ~s~~~lDLNl~a~e~e~~~~~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~vvF~~l~~~~~~l~~~i~~~~~~~~~ 759 (850)
|| ...+.......|.|+|++|+|.++.|.|++.+ ++.+++ ..+...+.
T Consensus 186 ------~l-----------------------~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~--~~~~i~-~~~l~~~~ 233 (311)
T 4fcw_A 186 ------RI-----------------------RDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKE--QIRQIV-EIQMSYLR 233 (311)
T ss_dssp ------TH-----------------------HHHTHHHHHHHSCHHHHTTCSEEEECCCCCHH--HHHHHH-HHHTHHHH
T ss_pred ------HH-----------------------HHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHH--HHHHHH-HHHHHHHH
Confidence 00 00000001246899999999999999999973 554444 44445566
Q ss_pred HHHccCCceEEEeCHHHHHHHHhccCC---cchhHHHHHHHHHHhhHHHHHHhCCCC-CCceEEEee
Q 003070 760 EIFKRQNKVNFSVEERVLEEVLIGSGF---FHNSLFEKWLKEVFQTSLEAVKIGGKG-GGIEIRLCF 822 (850)
Q Consensus 760 ~~l~~~~~~~l~vd~~~~e~l~~~~~~---~~~r~le~wie~vl~~~l~~~~~~g~~-~~~~v~L~~ 822 (850)
+.++.. ++.+.++++++++|+... | .+.|.++++++..+...+.+....++. .+..|++..
T Consensus 234 ~~~~~~-~~~~~~~~~~~~~l~~~~-~~~~gn~R~L~~~i~~~~~~~~~~~i~~~~~~~~~~i~i~~ 298 (311)
T 4fcw_A 234 ARLAEK-RISLELTEAAKDFLAERG-YDPVFGARPLRRVIQRELETPLAQKILAGEVKEGDRVQVDV 298 (311)
T ss_dssp HHHHTT-TCEEEECHHHHHHHHHHS-CBTTTBTTTHHHHHHHHTHHHHHHHHHHTSSCTTCEEEEEE
T ss_pred HHHHhC-CcEEEeCHHHHHHHHHhC-CCccCCchhHHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEE
Confidence 666654 378999999999998865 5 679999999999999999999888875 445677663
No 5
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.81 E-value=1.1e-19 Score=200.44 Aligned_cols=259 Identities=12% Similarity=0.130 Sum_probs=168.4
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHhh----hC-------CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEe
Q 003070 475 RSDLYKVLQENVPWQFDSIHSIVEVLVECK----SA-------KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHI 543 (850)
Q Consensus 475 l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r----~g-------k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~i 543 (850)
+..|.+.|.+.|+||++++..|..+|.... .+ .+...+||.||+|+|||.+|++||+.+ ...|+.+
T Consensus 6 ~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~ 82 (363)
T 3hws_A 6 PHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL---DVPFTMA 82 (363)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEE
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEe
Confidence 457888999999999999999999995332 22 245789999999999999999999998 4679999
Q ss_pred cCccccCCCCCchh-----hHHHHhhh-------CCCEEEeeccccccCHH--------------HHHHHHhhhccCcc-
Q 003070 544 DMRKRNDGVSSHSE-----MLMGTLKN-------YEKLVVLVEDIDLADPQ--------------FIKILADGFETENF- 596 (850)
Q Consensus 544 dms~~~~~~~~~~~-----~l~e~vr~-------~P~sVvlldeiekA~~~--------------v~~~l~q~~d~G~l- 596 (850)
+++.... ++|+| .+++.++. .+.+||||||||++++. +++.|+++|| |++
T Consensus 83 ~~~~l~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~le-g~~~ 159 (363)
T 3hws_A 83 DATTLTE--AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIE-GTVA 159 (363)
T ss_dssp EHHHHTT--CHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHH-CC--
T ss_pred chHHhcc--cccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhc-Ccee
Confidence 9886532 23443 45555444 35679999999999887 9999999999 542
Q ss_pred ------------CceEEEEecCC----------CchhhhhhhhcccccchhheecccCcccccchhhhhhhhccCCCCCc
Q 003070 597 ------------GKVIFVLTKGD----------SSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRI 654 (850)
Q Consensus 597 ------------~n~Iii~Tsn~----------~~~~~e~~~~~~~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~ 654 (850)
+|+++|+|||- ...+-++.+. +...+ +|...- .. . .
T Consensus 160 ~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~--~~~~~---------gf~~~~-~~-~-~-------- 217 (363)
T 3hws_A 160 AVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVE--TGSGI---------GFGATV-KA-K-S-------- 217 (363)
T ss_dssp --------------CCCCCTTSSEEEEEECCTTHHHHHHHHHC--CCC--------------------------------
T ss_pred eccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhh--ccccC---------Cccccc-cc-c-c--------
Confidence 24455555552 1111000000 00000 010000 00 0 0
Q ss_pred cccccccccccccccCCCcccccccCcccccccccccCCcCccCCCCCCCCCCCcccchhhcccCCCCCchhhhcccceE
Q 003070 655 DEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRF 734 (850)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~kr~~~~~~s~~~lDLNl~a~e~e~~~~~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~v 734 (850)
+.+ . +-+| ...+..+......|.|+|++|+|.++
T Consensus 218 -~~~----------------~--------~~~l---------------------~~~v~~~~l~~~~~~~~l~~R~~~~~ 251 (363)
T 3hws_A 218 -DKA----------------S--------EGEL---------------------LAQVEPEDLIKFGLIPEFIGRLPVVA 251 (363)
T ss_dssp -CCS----------------C--------HHHH---------------------HHTCCHHHHHHHTCCHHHHTTCCEEE
T ss_pred -cch----------------h--------hHHH---------------------HHhCCHHHHHHcCCCHHHhcccCeee
Confidence 000 0 0000 00000010111359999999999999
Q ss_pred eccCCCCCchhHHHHHHH---HHHHHHHHHHccCCceEEEeCHHHHHHHHhcc--CCcchhHHHHHHHHHHhhHHHHHHh
Q 003070 735 VFNRNSSNDGKITGLFLA---KMKESFDEIFKRQNKVNFSVEERVLEEVLIGS--GFFHNSLFEKWLKEVFQTSLEAVKI 809 (850)
Q Consensus 735 vF~~l~~~~~~l~~~i~~---~~~~~~~~~l~~~~~~~l~vd~~~~e~l~~~~--~~~~~r~le~wie~vl~~~l~~~~~ 809 (850)
+|.|++.+ .+.+++.. .+...+.+.++.. ++.+.++++++++|+..+ ...++|.|+++|+..+.+.+.++-.
T Consensus 252 ~~~pl~~~--~~~~I~~~~~~~l~~~~~~~~~~~-~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~ 328 (363)
T 3hws_A 252 TLNELSEE--ALIQILKEPKNALTKQYQALFNLE-GVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPS 328 (363)
T ss_dssp ECCCCCHH--HHHHHHHSSTTCHHHHHHHHHHTT-TCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTT
T ss_pred ecCCCCHH--HHHHHHHHHHHHHHHHHHHHHHhc-CceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhccc
Confidence 99999983 45444332 2667788887655 388999999999999764 2368999999999999999987644
Q ss_pred C
Q 003070 810 G 810 (850)
Q Consensus 810 ~ 810 (850)
.
T Consensus 329 ~ 329 (363)
T 3hws_A 329 M 329 (363)
T ss_dssp C
T ss_pred c
Confidence 4
No 6
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.79 E-value=1.4e-18 Score=192.50 Aligned_cols=256 Identities=13% Similarity=0.145 Sum_probs=167.1
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHH----HHhhhC----------------------CCCeEEEEecCCchHHHHHHHH
Q 003070 475 RSDLYKVLQENVPWQFDSIHSIVEVL----VECKSA----------------------KKATWFLLQGNDTIGKRRLALS 528 (850)
Q Consensus 475 l~~L~~~L~~~V~gQ~eai~~Ia~av----~~~r~g----------------------k~~~~~lf~Gp~gvGKt~lA~~ 528 (850)
++.|++.|.+.|+||++|+..|..+| .+.+.| ++...+||.||+|+|||.+|++
T Consensus 12 ~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 12 PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHH
Confidence 66899999999999999999999998 444432 3567899999999999999999
Q ss_pred HHHHhcCCCCceEEecCccccCCCCCch-----hhHHHHhh-------hCCCEEEeeccccccCHH--------------
Q 003070 529 IAESVFGSTDLLFHIDMRKRNDGVSSHS-----EMLMGTLK-------NYEKLVVLVEDIDLADPQ-------------- 582 (850)
Q Consensus 529 LA~~lfgs~~~~i~idms~~~~~~~~~~-----~~l~e~vr-------~~P~sVvlldeiekA~~~-------------- 582 (850)
||+.+ ...++.+|++.... .+|+ +.+++.+. ..++.|||||||++..+.
T Consensus 92 la~~l---~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~ 166 (376)
T 1um8_A 92 LAKHL---DIPIAISDATSLTE--AGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEG 166 (376)
T ss_dssp HHHHT---TCCEEEEEGGGCC----------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHH
T ss_pred HHHHh---CCCEEEecchhhhh--cCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHH
Confidence 99988 45789999887532 2232 23454433 346789999999999988
Q ss_pred HHHHHHhhhccCcc--------------------CceEEEEecCCCchhhhhhhhcccccchhheecccCcccccchhhh
Q 003070 583 FIKILADGFETENF--------------------GKVIFVLTKGDSSNYEERIENQDSVINMTLKVNERNQNFDHKRKAE 642 (850)
Q Consensus 583 v~~~l~q~~d~G~l--------------------~n~Iii~Tsn~~~~~~e~~~~~~~~~~l~l~~~~~~~~~~~krk~~ 642 (850)
+++.|+++||.+.+ .|.+||+|+| ...+.+. +. |+-.
T Consensus 167 ~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~-~~~l~~~-l~---------------------~R~~ 223 (376)
T 1um8_A 167 VQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGA-FDGLAEI-IK---------------------KRTT 223 (376)
T ss_dssp HHHHHHHHHHCCEEC---------------CEECTTCEEEEEEC-CTTHHHH-TT---------------------TSCS
T ss_pred HHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCC-HHHHHHH-HH---------------------HHhc
Confidence 99999999997742 2445555544 1111110 00 0000
Q ss_pred hhhhccCCCCCccccccccccccccccCCCcccccccCcccccccccccCCcCccCCCCCCCCCCCcccchhhcccCCCC
Q 003070 643 WEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPAL 722 (850)
Q Consensus 643 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~~~~s~~~lDLNl~a~e~e~~~~~~~~~~~~~~sd~~~e~~~~~~~ 722 (850)
. .++-.+++..+.. +. ..+......+......|
T Consensus 224 ---------------------------------------~--~~~g~~~~~~~~~---~~---~~~~~~~~~~~l~~~~~ 256 (376)
T 1um8_A 224 ---------------------------------------Q--NVLGFTQEKMSKK---EQ---EAILHLVQTHDLVTYGL 256 (376)
T ss_dssp ---------------------------------------S--CCCSCCCSSCCTT---TT---TTSGGGCCHHHHHHTTC
T ss_pred ---------------------------------------c--cccCCCchhhhcc---ch---hHHHhhcCHHHHhhcCC
Confidence 0 0000011000000 00 00000010111112468
Q ss_pred CchhhhcccceEeccCCCCCchhHHHHHHH---HHHHHHHHHHccCCceEEEeCHHHHHHHHhccCC---cchhHHHHHH
Q 003070 723 SNGFLDLIQNRFVFNRNSSNDGKITGLFLA---KMKESFDEIFKRQNKVNFSVEERVLEEVLIGSGF---FHNSLFEKWL 796 (850)
Q Consensus 723 ~~efLnriD~~vvF~~l~~~~~~l~~~i~~---~~~~~~~~~l~~~~~~~l~vd~~~~e~l~~~~~~---~~~r~le~wi 796 (850)
.|+|++|++.+|.|.|++. +++.+++.. .+...+.+.+... +..+.++++++++|+..+ | .+.|.++++|
T Consensus 257 ~p~l~~R~~~~i~~~~l~~--~~l~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~l~~~~-~~~~~~~R~L~~~l 332 (376)
T 1um8_A 257 IPELIGRLPVLSTLDSISL--EAMVDILQKPKNALIKQYQQLFKMD-EVDLIFEEEAIKEIAQLA-LERKTGARGLRAII 332 (376)
T ss_dssp CHHHHTTCCEEEECCCCCH--HHHHHHHHSSTTCHHHHHHHHHHTT-TCEEEECHHHHHHHHHHH-HHTTCTGGGHHHHH
T ss_pred ChHHhcCCCceeeccCCCH--HHHHHHHhhhHHHHHHHHHHHHhhc-CceEEECHHHHHHHHHHh-cccccCcHHHHHHH
Confidence 9999999999999999998 466555542 4555666666544 278999999999999876 4 7899999999
Q ss_pred HHHHhhHHHHHHh
Q 003070 797 KEVFQTSLEAVKI 809 (850)
Q Consensus 797 e~vl~~~l~~~~~ 809 (850)
+..+...+.+...
T Consensus 333 e~~~~~~~~~~~~ 345 (376)
T 1um8_A 333 EDFCLDIMFDLPK 345 (376)
T ss_dssp HHHHHHHHHTGGG
T ss_pred HHHHHHHHhhccC
Confidence 9999998876654
No 7
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.79 E-value=1.4e-19 Score=207.18 Aligned_cols=145 Identities=16% Similarity=0.304 Sum_probs=118.9
Q ss_pred CCCcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHH
Q 003070 68 ASVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNL 147 (850)
Q Consensus 68 ~~gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rl 147 (850)
.-||++++++++++|+|++++||+|+|+||+|||++++++++++.++++|..|++.+|+.+|++ +..+|+|+.++
T Consensus 182 iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-----~~~~g~~e~~~ 256 (468)
T 3pxg_A 182 VIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-----TKYRGEFEDRL 256 (468)
T ss_dssp CCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------CTTH
T ss_pred ccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-----ccccchHHHHH
Confidence 3499999999999999999999999999999999999999999999999999999999999876 45699999999
Q ss_pred HHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccH
Q 003070 148 TELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASY 227 (850)
Q Consensus 148 keL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~ 227 (850)
+.++.+++. .+++||||| +. .+ +.|+|++++ .+|+++||||||.
T Consensus 257 ~~~~~~~~~----~~~~iLfiD--------~~--------------~~--------a~~~L~~~L--~~g~v~vI~at~~ 300 (468)
T 3pxg_A 257 KKVMDEIRQ----AGNIILFID--------AA--------------ID--------ASNILKPSL--ARGELQCIGATTL 300 (468)
T ss_dssp HHHHHHHHT----CCCCEEEEC--------C------------------------------CCCT--TSSSCEEEEECCT
T ss_pred HHHHHHHHh----cCCeEEEEe--------Cc--------------hh--------HHHHHHHhh--cCCCEEEEecCCH
Confidence 999999986 568999999 21 12 358899987 7899999999999
Q ss_pred HHHHhhhhcCCcccccccceeeecCCCC
Q 003070 228 QTYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 228 eeY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
.+|+++++.+|+|.+| ||.|.|+.|+
T Consensus 301 ~e~~~~~~~~~al~~R--f~~i~v~~p~ 326 (468)
T 3pxg_A 301 DEYRKYIEKDAALERR--FQPIQVDQPS 326 (468)
T ss_dssp TTTHHHHTTCSHHHHS--EEEEECCCCC
T ss_pred HHHHHHhhcCHHHHHh--CccceeCCCC
Confidence 9999999999999996 5788888877
No 8
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.68 E-value=5.4e-16 Score=164.95 Aligned_cols=217 Identities=11% Similarity=0.158 Sum_probs=159.2
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHh--h--------hCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEec
Q 003070 475 RSDLYKVLQENVPWQFDSIHSIVEVLVEC--K--------SAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID 544 (850)
Q Consensus 475 l~~L~~~L~~~V~gQ~eai~~Ia~av~~~--r--------~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id 544 (850)
...|.+.|.+.|+||++++..|..++... + .+++...+||.||+|+|||.+|++||+.+ ...++.++
T Consensus 6 ~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~ 82 (310)
T 1ofh_A 6 PREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVE 82 (310)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEE
T ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEc
Confidence 45789999999999999999999999762 2 12445689999999999999999999988 45799999
Q ss_pred CccccCCCCCchh-----hHHHHhh-------h-CCCEEEeeccccccCHHH------------HHHHHhhhccCcc---
Q 003070 545 MRKRNDGVSSHSE-----MLMGTLK-------N-YEKLVVLVEDIDLADPQF------------IKILADGFETENF--- 596 (850)
Q Consensus 545 ms~~~~~~~~~~~-----~l~e~vr-------~-~P~sVvlldeiekA~~~v------------~~~l~q~~d~G~l--- 596 (850)
++.+.. .+|++ .+.+.+. + +++.||+|||||++++.. ++.|++.+|.+++
T Consensus 83 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~ 160 (310)
T 1ofh_A 83 ATKFTE--VGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTK 160 (310)
T ss_dssp GGGGSS--CCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEET
T ss_pred chhccc--CCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecc
Confidence 987632 24443 2333222 1 357899999999998764 9999999998864
Q ss_pred ------CceEEEEecCCCchhhhhhhhcccccchhheecccCcccccchhhhhhhhccCCCCCccccccccccccccccC
Q 003070 597 ------GKVIFVLTKGDSSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSS 670 (850)
Q Consensus 597 ------~n~Iii~Tsn~~~~~~e~~~~~~~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 670 (850)
.+.+||+|+|... . .
T Consensus 161 ~~~~~~~~~~~i~~~~~~~------------------------------------~----------~------------- 181 (310)
T 1ofh_A 161 HGMVKTDHILFIASGAFQV------------------------------------A----------R------------- 181 (310)
T ss_dssp TEEEECTTCEEEEEECCSS------------------------------------S----------C-------------
T ss_pred cccccCCcEEEEEcCCccc------------------------------------C----------C-------------
Confidence 2555555543100 0 0
Q ss_pred CCcccccccCcccccccccccCCcCccCCCCCCCCCCCcccchhhcccCCCCCchhhhcccceEeccCCCCCchhHHHHH
Q 003070 671 GNKKDFSRQSSFNTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLF 750 (850)
Q Consensus 671 ~~kr~~~~~~s~~~lDLNl~a~e~e~~~~~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~vvF~~l~~~~~~l~~~i 750 (850)
...+.|.|++|++.+|.|.|++. .++.+++
T Consensus 182 ------------------------------------------------~~~l~~~l~~R~~~~i~~~~~~~--~~~~~il 211 (310)
T 1ofh_A 182 ------------------------------------------------PSDLIPELQGRLPIRVELTALSA--ADFERIL 211 (310)
T ss_dssp ------------------------------------------------GGGSCHHHHHTCCEEEECCCCCH--HHHHHHH
T ss_pred ------------------------------------------------cccCCHHHHhhCCceEEcCCcCH--HHHHHHH
Confidence 01246889999998899999998 4565555
Q ss_pred HH---HHHHHHHHHHccCCceEEEeCHHHHHHHHhccC-------CcchhHHHHHHHHHHhhHHHH
Q 003070 751 LA---KMKESFDEIFKRQNKVNFSVEERVLEEVLIGSG-------FFHNSLFEKWLKEVFQTSLEA 806 (850)
Q Consensus 751 ~~---~~~~~~~~~l~~~~~~~l~vd~~~~e~l~~~~~-------~~~~r~le~wie~vl~~~l~~ 806 (850)
.. .+...+.+.+... ++.+.++++++++|+..+. ..+.|.+.++++..+.....+
T Consensus 212 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~ 276 (310)
T 1ofh_A 212 TEPHASLTEQYKALMATE-GVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFS 276 (310)
T ss_dssp HSSTTCHHHHHHHHHHHT-TCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhc-CCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcC
Confidence 42 4555566666544 2789999999999988751 246899999999988765533
No 9
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.53 E-value=7.3e-14 Score=158.63 Aligned_cols=85 Identities=8% Similarity=0.117 Sum_probs=68.6
Q ss_pred CCchhhhcccceEeccCCCCCchhHHHHH---HHHHHHHHHHHHccCCceEEEeCHHHHHHHHhccC-------CcchhH
Q 003070 722 LSNGFLDLIQNRFVFNRNSSNDGKITGLF---LAKMKESFDEIFKRQNKVNFSVEERVLEEVLIGSG-------FFHNSL 791 (850)
Q Consensus 722 ~~~efLnriD~~vvF~~l~~~~~~l~~~i---~~~~~~~~~~~l~~~~~~~l~vd~~~~e~l~~~~~-------~~~~r~ 791 (850)
+.|||++|+.-+|.|.+++. +++.+++ ...+...+.+.++-++ +.|+++++|+++|+..+. ..|+|.
T Consensus 319 lipel~~R~~i~i~l~~lt~--~e~~~Il~~~~~~l~~q~~~~~~~~~-~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~ 395 (444)
T 1g41_A 319 LIPELQGRLPIRVELTALSA--ADFERILTEPHASLTEQYKALMATEG-VNIAFTTDAVKKIAEAAFRVNEKTENIGARR 395 (444)
T ss_dssp SCHHHHTTCCEEEECCCCCH--HHHHHHHHSSTTCHHHHHHHHHHTTT-CEEEECHHHHHHHHHHHHHHHHHSCCCGGGH
T ss_pred cchHHhcccceeeeCCCCCH--HHHHHHHHHHHHhHHHHHHHHhcccC-ceEEECHHHHHHHHHHHHHhccCCccCCchH
Confidence 35999999999999999998 4666666 3446667777887663 999999999999998642 369999
Q ss_pred HHHHHHHHHhhHHHHHHh
Q 003070 792 FEKWLKEVFQTSLEAVKI 809 (850)
Q Consensus 792 le~wie~vl~~~l~~~~~ 809 (850)
+++.|+.++.....++-.
T Consensus 396 L~~~ie~~~~~~~~~~~~ 413 (444)
T 1g41_A 396 LHTVMERLMDKISFSASD 413 (444)
T ss_dssp HHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 999999999988776643
No 10
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.51 E-value=6.3e-14 Score=136.62 Aligned_cols=162 Identities=18% Similarity=0.318 Sum_probs=129.8
Q ss_pred CCcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHH
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLT 148 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rlk 148 (850)
-||+++++++++.|.++..++.+|+|++|+|||.+++.+++.+..+..|..+.+..++.++++.+..+....++++.+++
T Consensus 25 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (195)
T 1jbk_A 25 IGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLK 104 (195)
T ss_dssp CSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHH
Confidence 48999999999999998889999999999999999999999999999999999999999998765333445899999999
Q ss_pred HHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHH
Q 003070 149 ELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQ 228 (850)
Q Consensus 149 eL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~e 228 (850)
++...+.. .+++.||+|||++++.+.+...+. .+ +.++|+..+ ..+++.+|++|+..
T Consensus 105 ~~~~~~~~---~~~~~vl~iDe~~~l~~~~~~~~~----------~~--------~~~~l~~~~--~~~~~~~i~~~~~~ 161 (195)
T 1jbk_A 105 GVLNDLAK---QEGNVILFIDELHTMVGAGKADGA----------MD--------AGNMLKPAL--ARGELHCVGATTLD 161 (195)
T ss_dssp HHHHHHHH---STTTEEEEEETGGGGTT------C----------CC--------CHHHHHHHH--HTTSCCEEEEECHH
T ss_pred HHHHHHhh---cCCCeEEEEeCHHHHhccCcccch----------HH--------HHHHHHHhh--ccCCeEEEEeCCHH
Confidence 99888765 266899999999999876532110 11 234555443 35789999999999
Q ss_pred HHHhhhhcCCcccccccceeeecCCCC
Q 003070 229 TYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 229 eY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
.|...+..+|+|-+|+ +.+.++.++
T Consensus 162 ~~~~~~~~~~~l~~r~--~~i~~~~p~ 186 (195)
T 1jbk_A 162 EYRQYIEKDAALERRF--QKVFVAEPS 186 (195)
T ss_dssp HHHHHTTTCHHHHTTE--EEEECCCCC
T ss_pred HHHHHHhcCHHHHHHh--ceeecCCCC
Confidence 9999888999999975 567777655
No 11
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.51 E-value=6e-13 Score=142.18 Aligned_cols=218 Identities=14% Similarity=0.097 Sum_probs=158.8
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHhh-------h----CCCCeEEEEecCCchHHHHHHHHHHHHhcCC----C
Q 003070 473 LQRSDLYKVLQENVPWQFDSIHSIVEVLVECK-------S----AKKATWFLLQGNDTIGKRRLALSIAESVFGS----T 537 (850)
Q Consensus 473 ~~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r-------~----gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs----~ 537 (850)
..+..+.+.|.+.|+||++++..|.+.+.... . +++...+||.||+|+|||.+|++||+.+... .
T Consensus 20 ~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~ 99 (309)
T 3syl_A 20 SGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRK 99 (309)
T ss_dssp TTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSS
T ss_pred ccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCC
Confidence 45778889999999999999999998776542 1 3556789999999999999999999988543 3
Q ss_pred CceEEecCccccCCCCCch-hhHHHHhhhCCCEEEeecccccc---------CHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 538 DLLFHIDMRKRNDGVSSHS-EMLMGTLKNYEKLVVLVEDIDLA---------DPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 538 ~~~i~idms~~~~~~~~~~-~~l~e~vr~~P~sVvlldeiekA---------~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
..++.++++.....-.|.. ..+.+.+....+.||+||||+.. ++.+++.|++.|++++ .+.+||+|+|.
T Consensus 100 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~-~~~~~i~~~~~ 178 (309)
T 3syl_A 100 GHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR-DDLVVILAGYA 178 (309)
T ss_dssp CCEEEECGGGTCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT-TTCEEEEEECH
T ss_pred CcEEEEcHHHhhhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC-CCEEEEEeCCh
Confidence 3789998876532211211 24555565556789999999955 9999999999999875 47888888863
Q ss_pred CchhhhhhhhcccccchhheecccCcccccchhhhhhhhccCCCCCccccccccccccccccCCCcccccccCccccccc
Q 003070 608 SSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDL 687 (850)
Q Consensus 608 ~~~~~e~~~~~~~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~~~~s~~~lDL 687 (850)
.. .. . . .
T Consensus 179 ~~-~~-------------------------------~-~----------~------------------------------ 185 (309)
T 3syl_A 179 DR-ME-------------------------------N-F----------F------------------------------ 185 (309)
T ss_dssp HH-HH-------------------------------H-H----------H------------------------------
T ss_pred HH-HH-------------------------------H-H----------H------------------------------
Confidence 10 00 0 0 0
Q ss_pred ccccCCcCccCCCCCCCCCCCcccchhhcccCCCCCchhhhcccceEeccCCCCCchhHHHHHHHHHHHHHHHHHccCCc
Q 003070 688 NMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNK 767 (850)
Q Consensus 688 Nl~a~e~e~~~~~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~vvF~~l~~~~~~l~~~i~~~~~~~~~~~l~~~~~ 767 (850)
...|.|.+|++.+|.|.|++. .++.+++...+. ..+
T Consensus 186 ---------------------------------~~~~~l~~R~~~~i~~~~~~~--~~~~~il~~~l~--------~~~- 221 (309)
T 3syl_A 186 ---------------------------------QSNPGFRSRIAHHIEFPDYSD--EELFEIAGHMLD--------DQN- 221 (309)
T ss_dssp ---------------------------------HHSTTHHHHEEEEEEECCCCH--HHHHHHHHHHHH--------HTT-
T ss_pred ---------------------------------hhCHHHHHhCCeEEEcCCcCH--HHHHHHHHHHHH--------HcC-
Confidence 012678899999999999998 355444433222 121
Q ss_pred eEEEeCHHHHHHHHhcc------CCcc-hhHHHHHHHHHHhhHHHHHHhC
Q 003070 768 VNFSVEERVLEEVLIGS------GFFH-NSLFEKWLKEVFQTSLEAVKIG 810 (850)
Q Consensus 768 ~~l~vd~~~~e~l~~~~------~~~~-~r~le~wie~vl~~~l~~~~~~ 810 (850)
+.+++++++.|+... .|+| .|.+.+.++..+.....++...
T Consensus 222 --~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~ 269 (309)
T 3syl_A 222 --YQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFTA 269 (309)
T ss_dssp --CEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --CCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 678999999998752 3666 8899999999998877777663
No 12
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.50 E-value=5.7e-14 Score=137.12 Aligned_cols=161 Identities=14% Similarity=0.305 Sum_probs=130.7
Q ss_pred CCcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHH
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLT 148 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rlk 148 (850)
.||+++++++++.|.++..++.+|+|++|+|||.+++.+++.+.....|..+.+..++.+++..+..+...+++.+.++.
T Consensus 25 ~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (187)
T 2p65_A 25 IGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLK 104 (187)
T ss_dssp CSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHH
Confidence 48999999999999988889999999999999999999999999999999889999999998765333345889999999
Q ss_pred HHHHHHhccccCCCCeEEEecchhhhhcCCc-cCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccH
Q 003070 149 ELKRKVDSLTSVGGGAIIYTGDLKWTVDQQE-SNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASY 227 (850)
Q Consensus 149 eL~~~V~~~~~~~~gvILfIdELh~lvgag~-~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~ 227 (850)
.+...+... +++.||+|||++++.+.+. .++ .. ++.++|+... .++.+.+|++++.
T Consensus 105 ~~~~~~~~~---~~~~vl~iDe~~~l~~~~~~~~~----------~~--------~~~~~l~~~~--~~~~~~ii~~~~~ 161 (187)
T 2p65_A 105 SILKEVQDA---EGQVVMFIDEIHTVVGAGAVAEG----------AL--------DAGNILKPML--ARGELRCIGATTV 161 (187)
T ss_dssp HHHHHHHHT---TTSEEEEETTGGGGSSSSSSCTT----------SC--------CTHHHHHHHH--HTTCSCEEEEECH
T ss_pred HHHHHHHhc---CCceEEEEeCHHHhccccccccc----------ch--------HHHHHHHHHH--hcCCeeEEEecCH
Confidence 998888762 5689999999999986543 110 01 2245555544 3578999999999
Q ss_pred HHHHhhhhcCCcccccccceeeecCCC
Q 003070 228 QTYMKCQMRQPPLEIQWALQAVSIPSG 254 (850)
Q Consensus 228 eeY~K~iekdPaLEr~W~LQ~V~Vps~ 254 (850)
..+.+....+|+|-+|| +.+.|+.|
T Consensus 162 ~~~~~~~~~~~~l~~R~--~~i~i~~p 186 (187)
T 2p65_A 162 SEYRQFIEKDKALERRF--QQILVEQP 186 (187)
T ss_dssp HHHHHHTTTCHHHHHHE--EEEECCSC
T ss_pred HHHHHHHhccHHHHHhc--CcccCCCC
Confidence 99998888999999975 56777655
No 13
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.50 E-value=1.2e-14 Score=176.74 Aligned_cols=151 Identities=15% Similarity=0.153 Sum_probs=107.8
Q ss_pred CcHHHHHHHHHHHhc-------------CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeeccccccc
Q 003070 70 VSKEDIKLVFEVFLR-------------KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLR 136 (850)
Q Consensus 70 gRdeeirrVieIL~R-------------r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~ 136 (850)
|.++.++++.+.+.. +..++.+|+|+||+|||.+++.++..+ +..++.++-..+ .
T Consensus 208 G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l----------~~~~i~v~~~~l--~ 275 (806)
T 1ypw_A 208 GCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLINGPEI--M 275 (806)
T ss_dssp SCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT----------TCEEEEEEHHHH--S
T ss_pred ChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CCcEEEEEchHh--h
Confidence 677777777777654 456789999999999999999998754 356777775433 3
Q ss_pred ccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCC
Q 003070 137 FMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASS 216 (850)
Q Consensus 137 ~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~ar 216 (850)
+...++++.+++.+...... ..+.|||||||+.+.+...... .....+++..+-.++.... .+
T Consensus 276 ~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~-----------~~~~~~~~~~Ll~ll~g~~--~~ 338 (806)
T 1ypw_A 276 SKLAGESESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKTH-----------GEVERRIVSQLLTLMDGLK--QR 338 (806)
T ss_dssp SSSTTHHHHHHHHHHHHHHH----HCSEEEEEESGGGTSCTTSCCC-----------SHHHHHHHHHHHHHHHSSC--TT
T ss_pred hhhhhhHHHHHHHHHHHHHh----cCCcEEEeccHHHhhhcccccc-----------chHHHHHHHHHHHHhhhhc--cc
Confidence 55689999999999998875 3578999999999987653110 1233455666667776443 46
Q ss_pred CeEEEEecccHHHHHhhhhcCCcccc--cccceeeecCCCC
Q 003070 217 TRVWLMATASYQTYMKCQMRQPPLEI--QWALQAVSIPSGG 255 (850)
Q Consensus 217 G~lwlIGatT~eeY~K~iekdPaLEr--~W~LQ~V~Vps~~ 255 (850)
..+.+|+||...+ ..+|++.+ ||+ +.+.++.|.
T Consensus 339 ~~v~vI~atn~~~-----~ld~al~r~gRf~-~~i~i~~p~ 373 (806)
T 1ypw_A 339 AHVIVMAATNRPN-----SIDPALRRFGRFD-REVDIGIPD 373 (806)
T ss_dssp SCCEEEEECSCTT-----TSCTTTTSTTSSC-EEECCCCCC
T ss_pred ccEEEecccCCch-----hcCHHHhcccccc-cccccCCCC
Confidence 7899999987542 45889988 654 445565555
No 14
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.44 E-value=5.2e-13 Score=155.60 Aligned_cols=212 Identities=17% Similarity=0.147 Sum_probs=144.2
Q ss_pred HHHHHHhccCCCchHHHHHHHHHHHHhhhC--CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC----
Q 003070 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSA--KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND---- 550 (850)
Q Consensus 477 ~L~~~L~~~V~gQ~eai~~Ia~av~~~r~g--k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~---- 550 (850)
.+.+.|.+.++||+++...+.+.+...... .+...++|.||+|+|||.||++||..+ ...+++++++....
T Consensus 74 ~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l---~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 74 EAGRLLDEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL---GRKFVRISLGGVRDESEI 150 (543)
T ss_dssp TGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH---TCEEEEECCCC-------
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc---CCCeEEEEecccchhhhh
Confidence 445567788999999999998877765543 245689999999999999999999998 46788888775321
Q ss_pred --CCCCchh--------hHHHHhhhCCCEEEeeccccccCHH----HHHHHHhhhccCcc--------------CceEEE
Q 003070 551 --GVSSHSE--------MLMGTLKNYEKLVVLVEDIDLADPQ----FIKILADGFETENF--------------GKVIFV 602 (850)
Q Consensus 551 --~~~~~~~--------~l~e~vr~~P~sVvlldeiekA~~~----v~~~l~q~~d~G~l--------------~n~Iii 602 (850)
....|++ .+..+.+.+| |+|||||+++.+. .++.|++.||.+.. .+++||
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~--vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP--VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp -------------CHHHHHHTTCSSSE--EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC--EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 0112333 2333334555 9999999999988 55889999987753 355666
Q ss_pred EecCCCchhhhhhhhcccccchhheecccCcccccchhhhhhhhccCCCCCccccccccccccccccCCCcccccccCcc
Q 003070 603 LTKGDSSNYEERIENQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSF 682 (850)
Q Consensus 603 ~Tsn~~~~~~e~~~~~~~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~~~~s~ 682 (850)
+|+|..
T Consensus 229 ~ttN~~-------------------------------------------------------------------------- 234 (543)
T 3m6a_A 229 ATANNL-------------------------------------------------------------------------- 234 (543)
T ss_dssp EECSST--------------------------------------------------------------------------
T ss_pred eccCcc--------------------------------------------------------------------------
Confidence 655421
Q ss_pred cccccccccCCcCccCCCCCCCCCCCcccchhhcccCCCCCchhhhcccceEeccCCCCCchhHHHHHHHHHHHHHHHHH
Q 003070 683 NTLDLNMKADDEDDEGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIF 762 (850)
Q Consensus 683 ~~lDLNl~a~e~e~~~~~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~vvF~~l~~~~~~l~~~i~~~~~~~~~~~l 762 (850)
..++|.|++|++ +|.|.+++. .+..+++...+...+.+..
T Consensus 235 -------------------------------------~~l~~aL~~R~~-vi~~~~~~~--~e~~~Il~~~l~~~~~~~~ 274 (543)
T 3m6a_A 235 -------------------------------------ATIPGPLRDRME-IINIAGYTE--IEKLEIVKDHLLPKQIKEH 274 (543)
T ss_dssp -------------------------------------TTSCHHHHHHEE-EEECCCCCH--HHHHHHHHHTHHHHHHHHT
T ss_pred -------------------------------------ccCCHHHHhhcc-eeeeCCCCH--HHHHHHHHHHHHHHHHHHc
Confidence 134578999995 899999997 4566666555554444444
Q ss_pred ccCCceEEEeCHHHHHHHHhccCC-cchhHHHHHHHHHHhhHHHHHH
Q 003070 763 KRQNKVNFSVEERVLEEVLIGSGF-FHNSLFEKWLKEVFQTSLEAVK 808 (850)
Q Consensus 763 ~~~~~~~l~vd~~~~e~l~~~~~~-~~~r~le~wie~vl~~~l~~~~ 808 (850)
+-. ...+.++++++++|+....| .+.|.+++.|+.++......+.
T Consensus 275 ~~~-~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~ 320 (543)
T 3m6a_A 275 GLK-KSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIV 320 (543)
T ss_dssp TCC-GGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-cccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHH
Confidence 432 13588999999999885434 5789999999988876554433
No 15
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.43 E-value=1.1e-12 Score=158.36 Aligned_cols=151 Identities=16% Similarity=0.161 Sum_probs=108.3
Q ss_pred cHHHHHHHHHH-HhcC---------CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccCh
Q 003070 71 SKEDIKLVFEV-FLRK---------KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKK 140 (850)
Q Consensus 71 RdeeirrVieI-L~Rr---------~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~R 140 (850)
--++++.+++. |... --+..+|.|.||+|||-+++.+|... |++++.++-+.+ -+..-
T Consensus 212 ~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el----------g~~~~~v~~~~l--~sk~~ 279 (806)
T 3cf2_A 212 QLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLINGPEI--MSKLA 279 (806)
T ss_dssp THHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT----------TCEEEEEEHHHH--HSSCT
T ss_pred HHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCeEEEEEhHHh--hcccc
Confidence 34667777665 3221 23578999999999999999888642 678999986643 45668
Q ss_pred hHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEE
Q 003070 141 EEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVW 220 (850)
Q Consensus 141 gefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lw 220 (850)
|+.|.+++++....+. ..+.|||||||..|.......+ .+..+.+|+++-.++.... .++.+-
T Consensus 280 gese~~lr~lF~~A~~----~~PsIIfIDEiDal~~~r~~~~-----------~~~~~riv~~LL~~mdg~~--~~~~V~ 342 (806)
T 3cf2_A 280 GESESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKTH-----------GEVERRIVSQLLTLMDGLK--QRAHVI 342 (806)
T ss_dssp THHHHHHHHHHHHHTT----SCSEEEEEESGGGTCCTTTTCC-----------CTTHHHHHHHHHTHHHHCC--GGGCEE
T ss_pred hHHHHHHHHHHHHHHH----cCCeEEEEehhcccccccCCCC-----------ChHHHHHHHHHHHHHhccc--ccCCEE
Confidence 9999999999999886 5689999999999987653211 1244566666666665443 467899
Q ss_pred EEecccHHHHHhhhhcCCcccc--cccceeeecCCCCc
Q 003070 221 LMATASYQTYMKCQMRQPPLEI--QWALQAVSIPSGGL 256 (850)
Q Consensus 221 lIGatT~eeY~K~iekdPaLEr--~W~LQ~V~Vps~~~ 256 (850)
+||||..- -.-||+|-| ||+ ..|.||.|..
T Consensus 343 VIaaTN~~-----d~LD~ALrR~GRFd-~~I~i~~Pd~ 374 (806)
T 3cf2_A 343 VMAATNRP-----NSIDPALRRFGRFD-REVDIGIPDA 374 (806)
T ss_dssp EEEECSST-----TTSCTTTTSTTSSC-EEEECCCCCH
T ss_pred EEEecCCh-----hhcCHHHhCCcccc-eEEecCCCCH
Confidence 99998743 246999998 665 4577776663
No 16
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.42 E-value=1.5e-12 Score=136.62 Aligned_cols=122 Identities=13% Similarity=0.136 Sum_probs=88.7
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC--------C--CC
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND--------G--VS 553 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~--------~--~~ 553 (850)
+.++||+.++..+.+.+..... ....+||.||+|+|||.+|++|+..+......|+.++++.+.. + ..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~--~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~ 83 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP--LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAG 83 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT--SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC--
T ss_pred ccceeCCHHHHHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCccc
Confidence 3478999999999888876543 3468999999999999999999999887778899999987521 0 01
Q ss_pred Cchhh---HHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccC----------ceEEEEecCC
Q 003070 554 SHSEM---LMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTKGD 607 (850)
Q Consensus 554 ~~~~~---l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~----------n~Iii~Tsn~ 607 (850)
.|.+. ..+.+..-...||+||||++.++.++..|+++|++|++. ++.||+|+|.
T Consensus 84 ~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 84 AFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp -------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred ccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 11111 011222334679999999999999999999999999752 6777887764
No 17
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.28 E-value=3.5e-11 Score=130.12 Aligned_cols=202 Identities=10% Similarity=0.129 Sum_probs=140.6
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC----------CCC
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND----------GVS 553 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~----------~~~ 553 (850)
+.++||+.++..+.+.+...- +....+||.||+|+|||.+|++|+.........|+.++++...+ ...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a--~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g 79 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA--PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKG 79 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC--STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSS
T ss_pred CCcEECCHHHHHHHHHHHHHh--CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCcccc
Confidence 458999999999988887653 34578999999999999999999998877778899999886421 000
Q ss_pred Cc-------hhhHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccC----------ceEEEEecCCCchhhhhhh
Q 003070 554 SH-------SEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTKGDSSNYEERIE 616 (850)
Q Consensus 554 ~~-------~~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~----------n~Iii~Tsn~~~~~~e~~~ 616 (850)
.| .+.+..+ ...+||||||+...+.+|..|+++|+++.+. ++.||+|||.. ..+
T Consensus 80 ~~tg~~~~~~g~~~~a----~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~--l~~--- 150 (304)
T 1ojl_A 80 AFTGADKRREGRFVEA----DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRD--LAE--- 150 (304)
T ss_dssp CCC---CCCCCHHHHH----TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSC--HHH---
T ss_pred ccCchhhhhcCHHHhc----CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCcc--HHH---
Confidence 11 1233222 2469999999999999999999999999863 67788877742 000
Q ss_pred hcccccchhheecccCcccccchhhhhhhhccCCCCCccccccccccccccccCCCcccccccCcccccccccccCCcCc
Q 003070 617 NQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDD 696 (850)
Q Consensus 617 ~~~~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~~~~s~~~lDLNl~a~e~e~ 696 (850)
...
T Consensus 151 ---------------------------~v~-------------------------------------------------- 153 (304)
T 1ojl_A 151 ---------------------------EVS-------------------------------------------------- 153 (304)
T ss_dssp ---------------------------HHH--------------------------------------------------
T ss_pred ---------------------------HHH--------------------------------------------------
Confidence 000
Q ss_pred cCCCCCCCCCCCcccchhhcccCCCCCchhhhcccce-EeccCCCCCchhHHHHHHHHHHHHHHHHHccCCceEEEeCHH
Q 003070 697 EGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNR-FVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEER 775 (850)
Q Consensus 697 ~~~~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~-vvF~~l~~~~~~l~~~i~~~~~~~~~~~l~~~~~~~l~vd~~ 775 (850)
...|+++|..|++.+ |.+.|+.....++. .+...+...+.+.++.. ...++++
T Consensus 154 ----------------------~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~-~l~~~~l~~~~~~~~~~---~~~~s~~ 207 (304)
T 1ojl_A 154 ----------------------AGRFRQDLYYRLNVVAIEMPSLRQRREDIP-LLADHFLRRFAERNRKV---VKGFTPQ 207 (304)
T ss_dssp ----------------------HTSSCHHHHHHHSSEEEECCCSGGGGGGHH-HHHHHHHHHHHHHTTCC---CCCBCHH
T ss_pred ----------------------hCCcHHHHHhhcCeeEEeccCHHHhHhhHH-HHHHHHHHHHHHHhccC---ccCCCHH
Confidence 035778899999744 77888884212343 23333334455555543 2568999
Q ss_pred HHHHHHhccCCcch-hHHHHHHHHHH
Q 003070 776 VLEEVLIGSGFFHN-SLFEKWLKEVF 800 (850)
Q Consensus 776 ~~e~l~~~~~~~~~-r~le~wie~vl 800 (850)
+++.|.... |.|+ |.++..++..+
T Consensus 208 a~~~L~~~~-wpGnvReL~~~l~~~~ 232 (304)
T 1ojl_A 208 AMDLLIHYD-WPGNIRELENAIERAV 232 (304)
T ss_dssp HHHHHHHCC-CSSHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCCCHHHHHHHHHHHH
Confidence 999998875 7764 67777777654
No 18
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.26 E-value=1.2e-10 Score=126.20 Aligned_cols=104 Identities=17% Similarity=0.171 Sum_probs=86.2
Q ss_pred cCCCchHHHHHHHHHHHHhhh-CCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHh
Q 003070 485 NVPWQFDSIHSIVEVLVECKS-AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTL 563 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~-gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~v 563 (850)
.++||++++..+...+...+. +.+...+||.||+|+|||.+|++||..+ ...|+.+++.... ..+.+.+.+
T Consensus 30 ~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~~-----~~~~~~~~~ 101 (338)
T 3pfi_A 30 GYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMIE-----KSGDLAAIL 101 (338)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGCC-----SHHHHHHHH
T ss_pred HhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhcc-----chhHHHHHH
Confidence 479999999999999988765 4566778999999999999999999986 3568888776542 345666666
Q ss_pred hh-CCCEEEeeccccccCHHHHHHHHhhhccCcc
Q 003070 564 KN-YEKLVVLVEDIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 564 r~-~P~sVvlldeiekA~~~v~~~l~q~~d~G~l 596 (850)
.. ....|||||||+...+.+++.|++.++++.+
T Consensus 102 ~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~ 135 (338)
T 3pfi_A 102 TNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRL 135 (338)
T ss_dssp HTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC
T ss_pred HhccCCCEEEEechhhcCHHHHHHHHHHHHhccc
Confidence 54 5568999999999999999999999999986
No 19
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.17 E-value=3.4e-10 Score=121.44 Aligned_cols=104 Identities=20% Similarity=0.103 Sum_probs=83.4
Q ss_pred cCCCchHHHHHHHHHHHHhhh-CCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHh
Q 003070 485 NVPWQFDSIHSIVEVLVECKS-AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTL 563 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~-gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~v 563 (850)
.++||++++..+...+..... +++...+||.||+|+|||.+|+++|..+ ...++.++++... ..+.+.+.+
T Consensus 13 ~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~-----~~~~l~~~l 84 (324)
T 1hqc_A 13 EYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIE-----KPGDLAAIL 84 (324)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCC-----SHHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccC-----ChHHHHHHH
Confidence 478999999999888877654 4556788999999999999999999987 2567777766432 234566666
Q ss_pred hh--CCCEEEeeccccccCHHHHHHHHhhhccCcc
Q 003070 564 KN--YEKLVVLVEDIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 564 r~--~P~sVvlldeiekA~~~v~~~l~q~~d~G~l 596 (850)
.. ....||+||||+...+..+..|++.++++.+
T Consensus 85 ~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~ 119 (324)
T 1hqc_A 85 ANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVM 119 (324)
T ss_dssp TTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEE
T ss_pred HHhccCCCEEEEECCcccccchHHHHHHHHHhhhh
Confidence 65 4567999999999999999999999999875
No 20
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.09 E-value=2e-10 Score=110.39 Aligned_cols=115 Identities=7% Similarity=-0.045 Sum_probs=88.1
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHh
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTL 563 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~v 563 (850)
+.++|+++++..+.+.+...- ....++||.||+|+|||.+|++|+.........|+ ++++...+. ....+.+..+
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~a--~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-~~~~~~~~~a- 75 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQLS--ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA-PQLNDFIALA- 75 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHHT--TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-SCHHHHHHHH-
T ss_pred CCceeCCHHHHHHHHHHHHHh--CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-hhhhcHHHHc-
Confidence 357899999999998887653 34568999999999999999999998877778899 999875332 1122333333
Q ss_pred hhCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 564 KNYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 564 r~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
...+++||||+...+.+|..|++.|+.... +..||+|||.
T Consensus 76 ---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~-~~~~I~~t~~ 115 (145)
T 3n70_A 76 ---QGGTLVLSHPEHLTREQQYHLVQLQSQEHR-PFRLIGIGDT 115 (145)
T ss_dssp ---TTSCEEEECGGGSCHHHHHHHHHHHHSSSC-SSCEEEEESS
T ss_pred ---CCcEEEEcChHHCCHHHHHHHHHHHhhcCC-CEEEEEECCc
Confidence 346999999999999999999999955443 6778888884
No 21
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.09 E-value=6e-10 Score=120.12 Aligned_cols=114 Identities=11% Similarity=0.116 Sum_probs=85.9
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhh
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLK 564 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr 564 (850)
.++||++++..+.+.+. .|+...-+||.||+|+|||.+|++||+.+ ...++.++.+... .....+.+.+...
T Consensus 27 ~ivg~~~~~~~l~~~l~---~~~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~~--~~~i~~~~~~~~~ 98 (324)
T 3u61_B 27 ECILPAFDKETFKSITS---KGKIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDCK--IDFVRGPLTNFAS 98 (324)
T ss_dssp TSCCCHHHHHHHHHHHH---TTCCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTCC--HHHHHTHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHH---cCCCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccccC--HHHHHHHHHHHHh
Confidence 57899999988888776 45444568889999999999999999988 3568888876532 0001113333333
Q ss_pred hC----CCEEEeeccccccC-HHHHHHHHhhhccCccCceEEEEecCC
Q 003070 565 NY----EKLVVLVEDIDLAD-PQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 565 ~~----P~sVvlldeiekA~-~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.. .+.||+||||+... ...++.|++.++... .+++||+|+|.
T Consensus 99 ~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~-~~~~iI~~~n~ 145 (324)
T 3u61_B 99 AASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS-SNCSIIITANN 145 (324)
T ss_dssp BCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHG-GGCEEEEEESS
T ss_pred hcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCC-CCcEEEEEeCC
Confidence 33 57899999999999 999999999999743 47889998874
No 22
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.07 E-value=2.2e-09 Score=116.41 Aligned_cols=199 Identities=10% Similarity=0.076 Sum_probs=138.3
Q ss_pred cCCCchHHHHHHHHHHHHhhh--------CCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCC----
Q 003070 485 NVPWQFDSIHSIVEVLVECKS--------AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGV---- 552 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~--------gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~---- 552 (850)
.|+||++++..|-++|..... +++...+||.||+|+|||.+|+++|..+ ...|+.+++++....-
T Consensus 19 di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~~~g~~ 95 (322)
T 3eie_A 19 DVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSKWMGES 95 (322)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHHHTTTGGGH
T ss_pred HhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHHhhcccchH
Confidence 478999999999888854322 2455679999999999999999999987 5678999887642111
Q ss_pred CCchhhHHHHhhhCCCEEEeeccccccC-----------HHHHHHHHhhhccCc--cCceEEEEecCCCchhhhhhhhcc
Q 003070 553 SSHSEMLMGTLKNYEKLVVLVEDIDLAD-----------PQFIKILADGFETEN--FGKVIFVLTKGDSSNYEERIENQD 619 (850)
Q Consensus 553 ~~~~~~l~e~vr~~P~sVvlldeiekA~-----------~~v~~~l~q~~d~G~--l~n~Iii~Tsn~~~~~~e~~~~~~ 619 (850)
...+..+.+..+....+||||||||... ..+++.|+..|+.-. -.+.+||.|+|...
T Consensus 96 ~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~---------- 165 (322)
T 3eie_A 96 EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW---------- 165 (322)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGG----------
T ss_pred HHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChh----------
Confidence 1122345555677777899999999753 356677777776432 23677777765310
Q ss_pred cccchhheecccCcccccchhhhhhhhccCCCCCccccccccccccccccCCCcccccccCcccccccccccCCcCccCC
Q 003070 620 SVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGE 699 (850)
Q Consensus 620 ~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~~~~s~~~lDLNl~a~e~e~~~~ 699 (850)
T Consensus 166 -------------------------------------------------------------------------------- 165 (322)
T 3eie_A 166 -------------------------------------------------------------------------------- 165 (322)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccchhhcccCCCCCchhhhcccceEeccCCCCCchhHHHHHHHHHHHHHHHHHccCCceEEEeCHHHHHH
Q 003070 700 QKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEE 779 (850)
Q Consensus 700 ~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~vvF~~l~~~~~~l~~~i~~~~~~~~~~~l~~~~~~~l~vd~~~~e~ 779 (850)
.+.+.|+.|+|..|.|.+.+. +.+..|+. ..+.. ..+.+++..+++
T Consensus 166 ---------------------~ld~al~~Rf~~~i~~~~p~~---~~r~~il~-------~~~~~---~~~~~~~~~l~~ 211 (322)
T 3eie_A 166 ---------------------QLDSAIRRRFERRIYIPLPDL---AARTTMFE-------INVGD---TPCVLTKEDYRT 211 (322)
T ss_dssp ---------------------GSCHHHHHHCCEEEECCCCCH---HHHHHHHH-------HHHTT---CCCCCCHHHHHH
T ss_pred ---------------------hCCHHHHcccCeEEEeCCCCH---HHHHHHHH-------HHhcc---CCCCCCHHHHHH
Confidence 013566778998999998887 23333322 22322 235678999999
Q ss_pred HHhccCCcchhHHHHHHHHHHhhHHHHHHhC
Q 003070 780 VLIGSGFFHNSLFEKWLKEVFQTSLEAVKIG 810 (850)
Q Consensus 780 l~~~~~~~~~r~le~wie~vl~~~l~~~~~~ 810 (850)
|+....-+..+.+...+++.....+.+....
T Consensus 212 la~~t~g~sg~di~~l~~~a~~~a~r~~~~~ 242 (322)
T 3eie_A 212 LGAMTEGYSGSDIAVVVKDALMQPIRKIQSA 242 (322)
T ss_dssp HHHTTTTCCHHHHHHHHHHHTTHHHHHHHHC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 9887644667889999999999998887765
No 23
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.07 E-value=4.9e-09 Score=119.14 Aligned_cols=200 Identities=11% Similarity=0.086 Sum_probs=138.7
Q ss_pred cCCCchHHHHHHHHHHHHhh-------h-CCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCC----C
Q 003070 485 NVPWQFDSIHSIVEVLVECK-------S-AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG----V 552 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r-------~-gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~----~ 552 (850)
.|+||+++...+.++|.... . .++...+||.||+|+|||.||++||..+. ...|+.++++..... .
T Consensus 135 di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~~~~l~~~~~g~~ 212 (444)
T 2zan_A 135 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSKWLGES 212 (444)
T ss_dssp GSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC---------C
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeHHHHHhhhcchH
Confidence 47899999999988885431 1 14556788999999999999999999873 357899998764221 1
Q ss_pred CCchhhHHHHhhhCCCEEEeecccccc-----------CHHHHHHHHhhhccCc--cCceEEEEecCCCchhhhhhhhcc
Q 003070 553 SSHSEMLMGTLKNYEKLVVLVEDIDLA-----------DPQFIKILADGFETEN--FGKVIFVLTKGDSSNYEERIENQD 619 (850)
Q Consensus 553 ~~~~~~l~e~vr~~P~sVvlldeiekA-----------~~~v~~~l~q~~d~G~--l~n~Iii~Tsn~~~~~~e~~~~~~ 619 (850)
...+..+.+..+....+||||||||.. ...+++.|+..|+.-. -.+.+||+|+|...
T Consensus 213 ~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~---------- 282 (444)
T 2zan_A 213 EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW---------- 282 (444)
T ss_dssp CCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGG----------
T ss_pred HHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCcc----------
Confidence 223445666667777789999999976 3467777888777532 34778888775310
Q ss_pred cccchhheecccCcccccchhhhhhhhccCCCCCccccccccccccccccCCCcccccccCcccccccccccCCcCccCC
Q 003070 620 SVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGE 699 (850)
Q Consensus 620 ~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~~~~s~~~lDLNl~a~e~e~~~~ 699 (850)
T Consensus 283 -------------------------------------------------------------------------------- 282 (444)
T 2zan_A 283 -------------------------------------------------------------------------------- 282 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccchhhcccCCCCCchhhhcccceEeccCCCCCchhHHHHHHHHHHHHHHHHHccCCceEEEeCHHHHHH
Q 003070 700 QKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEE 779 (850)
Q Consensus 700 ~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~vvF~~l~~~~~~l~~~i~~~~~~~~~~~l~~~~~~~l~vd~~~~e~ 779 (850)
...|.|+.|+|.+|.|.+.+. +.+..|+. ..+... .+.+++..++.
T Consensus 283 ---------------------~ld~al~rRf~~~i~i~~P~~---~~r~~il~-------~~l~~~---~~~l~~~~l~~ 328 (444)
T 2zan_A 283 ---------------------VLDSAIRRRFEKRIYIPLPEA---HARAAMFR-------LHLGST---QNSLTEADFQE 328 (444)
T ss_dssp ---------------------GSCHHHHTTCCEEEECCCCCH---HHHHHHHH-------HHHTTS---CEECCHHHHHH
T ss_pred ---------------------ccCHHHHhhcceEEEeCCcCH---HHHHHHHH-------HHHhcC---CCCCCHHHHHH
Confidence 012456778888888877776 33333322 223332 35678999999
Q ss_pred HHhccCCcchhHHHHHHHHHHhhHHHHHHhC
Q 003070 780 VLIGSGFFHNSLFEKWLKEVFQTSLEAVKIG 810 (850)
Q Consensus 780 l~~~~~~~~~r~le~wie~vl~~~l~~~~~~ 810 (850)
|+....-|..+.|+..+++.+..++.++...
T Consensus 329 la~~t~G~sgadl~~l~~~a~~~a~r~~~~~ 359 (444)
T 2zan_A 329 LGRKTDGYSGADISIIVRDALMQPVRKVQSA 359 (444)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTHHHHHHHHC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9887645678899999999999999887653
No 24
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.06 E-value=8.7e-09 Score=112.16 Aligned_cols=200 Identities=11% Similarity=0.078 Sum_probs=135.6
Q ss_pred cCCCchHHHHHHHHHHHHhhh------C--CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCC--
Q 003070 485 NVPWQFDSIHSIVEVLVECKS------A--KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSS-- 554 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~------g--k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~-- 554 (850)
.|.|++++...+-++|..... | ++...+||.||+|+|||.||+++|..+- ...|+.+++++....-.|
T Consensus 13 di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l~~~~~g~~ 90 (322)
T 1xwi_A 13 DVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSKWLGES 90 (322)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSCCSSCCSC
T ss_pred HhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHHHhhhhhHH
Confidence 478899998888888865321 2 3446788999999999999999999873 457899988765322111
Q ss_pred --chhhHHHHhhhCCCEEEeecccccc-----------CHHHHHHHHhhhccCc--cCceEEEEecCCCchhhhhhhhcc
Q 003070 555 --HSEMLMGTLKNYEKLVVLVEDIDLA-----------DPQFIKILADGFETEN--FGKVIFVLTKGDSSNYEERIENQD 619 (850)
Q Consensus 555 --~~~~l~e~vr~~P~sVvlldeiekA-----------~~~v~~~l~q~~d~G~--l~n~Iii~Tsn~~~~~~e~~~~~~ 619 (850)
.+..+.+..+....+||||||||.. ...+.+.|+..|+.-. -.+.+||.|+|...
T Consensus 91 ~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~---------- 160 (322)
T 1xwi_A 91 EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW---------- 160 (322)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT----------
T ss_pred HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc----------
Confidence 2234555566677789999999976 2345666666666422 24677777765310
Q ss_pred cccchhheecccCcccccchhhhhhhhccCCCCCccccccccccccccccCCCcccccccCcccccccccccCCcCccCC
Q 003070 620 SVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEGE 699 (850)
Q Consensus 620 ~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~~~~s~~~lDLNl~a~e~e~~~~ 699 (850)
T Consensus 161 -------------------------------------------------------------------------------- 160 (322)
T 1xwi_A 161 -------------------------------------------------------------------------------- 160 (322)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCcccchhhcccCCCCCchhhhcccceEeccCCCCCchhHHHHHHHHHHHHHHHHHccCCceEEEeCHHHHHH
Q 003070 700 QKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLEE 779 (850)
Q Consensus 700 ~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~vvF~~l~~~~~~l~~~i~~~~~~~~~~~l~~~~~~~l~vd~~~~e~ 779 (850)
...+.|+.|+|..|.|.+.+. +-+..|+. ..+.. ..+.+++..++.
T Consensus 161 ---------------------~ld~al~rRf~~~i~i~~P~~---~~r~~il~-------~~l~~---~~~~l~~~~l~~ 206 (322)
T 1xwi_A 161 ---------------------VLDSAIRRRFEKRIYIPLPEP---HARAAMFK-------LHLGT---TQNSLTEADFRE 206 (322)
T ss_dssp ---------------------TSCHHHHHTCCEEEECCCCCH---HHHHHHHH-------HHHTT---CCBCCCHHHHHH
T ss_pred ---------------------cCCHHHHhhcCeEEEeCCcCH---HHHHHHHH-------HHHhc---CCCCCCHHHHHH
Confidence 112456778888888888876 23333332 22322 224568999999
Q ss_pred HHhccCCcchhHHHHHHHHHHhhHHHHHHhC
Q 003070 780 VLIGSGFFHNSLFEKWLKEVFQTSLEAVKIG 810 (850)
Q Consensus 780 l~~~~~~~~~r~le~wie~vl~~~l~~~~~~ 810 (850)
|+....-+..+.++..+++.....+.++...
T Consensus 207 la~~t~G~sgadl~~l~~~A~~~a~r~~~~~ 237 (322)
T 1xwi_A 207 LGRKTDGYSGADISIIVRDALMQPVRKVQSA 237 (322)
T ss_dssp HHHTCTTCCHHHHHHHHHHHHTHHHHHHHHC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9887644667889999999999888887643
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.04 E-value=4.4e-09 Score=111.78 Aligned_cols=119 Identities=13% Similarity=0.193 Sum_probs=83.1
Q ss_pred cCCCchHHHHHHHHHHHHhh--------hCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCch
Q 003070 485 NVPWQFDSIHSIVEVLVECK--------SAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS 556 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r--------~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~ 556 (850)
.|+||++++..+-+.+.... .+.+...+||.||+|+|||.+|++||..+ ...++.++++.......+..
T Consensus 22 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~~~~ 98 (297)
T 3b9p_A 22 DIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTSKYVGDG 98 (297)
T ss_dssp GSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSSSSCSCH
T ss_pred HhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhhcccchH
Confidence 47899999999988886643 22455688999999999999999999987 46788998876532212211
Q ss_pred h----hHHHHhhhCCCEEEeecccccc-----------CHHHHHHHHhhhccCcc----CceEEEEecC
Q 003070 557 E----MLMGTLKNYEKLVVLVEDIDLA-----------DPQFIKILADGFETENF----GKVIFVLTKG 606 (850)
Q Consensus 557 ~----~l~e~vr~~P~sVvlldeiekA-----------~~~v~~~l~q~~d~G~l----~n~Iii~Tsn 606 (850)
+ .+.+..+.....||+||||+.. ...+++.|+..++.-.. .+.+||+|+|
T Consensus 99 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn 167 (297)
T 3b9p_A 99 EKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATN 167 (297)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEES
T ss_pred HHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecC
Confidence 1 3444455666789999999875 34566667776665432 2567777665
No 26
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.03 E-value=3.7e-09 Score=116.63 Aligned_cols=200 Identities=11% Similarity=0.078 Sum_probs=136.3
Q ss_pred ccCCCchHHHHHHHHHHHHhh--------hCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCC-
Q 003070 484 ENVPWQFDSIHSIVEVLVECK--------SAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSS- 554 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r--------~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~- 554 (850)
+.|+||++++..|-++|.... .+++...+||.||+|+|||.||++||..+ ...|+.+++++....-.+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~l~~~~~g~ 127 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSKWMGE 127 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHHHHSCC---
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHHHhhhhcch
Confidence 358999999999998886431 12445568899999999999999999988 467888987754211111
Q ss_pred ---chhhHHHHhhhCCCEEEeeccccccC-----------HHHHHHHHhhhccCc--cCceEEEEecCCCchhhhhhhhc
Q 003070 555 ---HSEMLMGTLKNYEKLVVLVEDIDLAD-----------PQFIKILADGFETEN--FGKVIFVLTKGDSSNYEERIENQ 618 (850)
Q Consensus 555 ---~~~~l~e~vr~~P~sVvlldeiekA~-----------~~v~~~l~q~~d~G~--l~n~Iii~Tsn~~~~~~e~~~~~ 618 (850)
.+..+.+..+....+||||||||... ..+++.|+..|+.-. -.+.+||.|+|...
T Consensus 128 ~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~--------- 198 (355)
T 2qp9_X 128 SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW--------- 198 (355)
T ss_dssp CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG---------
T ss_pred HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc---------
Confidence 12234455566677899999999765 346777777776422 24677777775310
Q ss_pred ccccchhheecccCcccccchhhhhhhhccCCCCCccccccccccccccccCCCcccccccCcccccccccccCCcCccC
Q 003070 619 DSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDEG 698 (850)
Q Consensus 619 ~~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~~~~s~~~lDLNl~a~e~e~~~ 698 (850)
T Consensus 199 -------------------------------------------------------------------------------- 198 (355)
T 2qp9_X 199 -------------------------------------------------------------------------------- 198 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcccchhhcccCCCCCchhhhcccceEeccCCCCCchhHHHHHHHHHHHHHHHHHccCCceEEEeCHHHHH
Q 003070 699 EQKPGELSPISSDLTRENITNPALSNGFLDLIQNRFVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERVLE 778 (850)
Q Consensus 699 ~~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~vvF~~l~~~~~~l~~~i~~~~~~~~~~~l~~~~~~~l~vd~~~~e 778 (850)
...+.++.|+|..|.|.+.+. +.+..|+. ..+... .+.+++..++
T Consensus 199 ----------------------~ld~al~rRf~~~i~i~~P~~---~~r~~il~-------~~l~~~---~~~~~~~~l~ 243 (355)
T 2qp9_X 199 ----------------------QLDSAIRRRFERRIYIPLPDL---AARTTMFE-------INVGDT---PSVLTKEDYR 243 (355)
T ss_dssp ----------------------GSCHHHHHTCCEEEECCCCCH---HHHHHHHH-------HHHTTS---CBCCCHHHHH
T ss_pred ----------------------cCCHHHHcccCEEEEeCCcCH---HHHHHHHH-------HHHhhC---CCCCCHHHHH
Confidence 012456778888888888876 22333322 223222 2456889999
Q ss_pred HHHhccCCcchhHHHHHHHHHHhhHHHHHHhC
Q 003070 779 EVLIGSGFFHNSLFEKWLKEVFQTSLEAVKIG 810 (850)
Q Consensus 779 ~l~~~~~~~~~r~le~wie~vl~~~l~~~~~~ 810 (850)
.|+....-+..+.|..++++.+..++.+....
T Consensus 244 ~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~ 275 (355)
T 2qp9_X 244 TLGAMTEGYSGSDIAVVVKDALMQPIRKIQSA 275 (355)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99887644677899999999999999877643
No 27
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.03 E-value=2.7e-09 Score=106.08 Aligned_cols=117 Identities=15% Similarity=0.205 Sum_probs=82.9
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCC--CCceEEecCccccCCCCCchhhHHHH
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGS--TDLLFHIDMRKRNDGVSSHSEMLMGT 562 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs--~~~~i~idms~~~~~~~~~~~~l~e~ 562 (850)
.++||++++..+.+.+... +. ..++|.||+|+|||.+|+++|+.+.+. ...++.++.+.... .......+...
T Consensus 18 ~~~g~~~~~~~l~~~l~~~---~~-~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 92 (226)
T 2chg_A 18 EVVGQDEVIQRLKGYVERK---NI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG-IDVVRHKIKEF 92 (226)
T ss_dssp GCCSCHHHHHHHHHHHHTT---CC-CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC-HHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHhCC---CC-CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC-hHHHHHHHHHH
Confidence 4788888888888877542 22 238999999999999999999987543 23466666654311 00011223333
Q ss_pred hh-----hCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 563 LK-----NYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 563 vr-----~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.. .....||+|||++..++..++.|++.++... .+++||+|+|.
T Consensus 93 ~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~ 141 (226)
T 2chg_A 93 ARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYS-KSCRFILSCNY 141 (226)
T ss_dssp HTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESC
T ss_pred hcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcC-CCCeEEEEeCC
Confidence 33 2567899999999999999999999998743 47888888753
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.03 E-value=2.5e-09 Score=118.99 Aligned_cols=120 Identities=14% Similarity=0.179 Sum_probs=85.6
Q ss_pred cCCCchHHHHHHHHHHHHhhh--------CCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCC--
Q 003070 485 NVPWQFDSIHSIVEVLVECKS--------AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSS-- 554 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~--------gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~-- 554 (850)
.|+||++++..|.+.+..... +.+...+||.||+|+|||.+|++||..+ ...|+.++++.....-.+
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~~~g~~ 192 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTSKYVGEG 192 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC-------C
T ss_pred HhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhhccccchH
Confidence 479999999999988865432 3455789999999999999999999986 468999998875321111
Q ss_pred --chhhHHHHhhhCCCEEEeecccccc-----------CHHHHHHHHhhhccCcc---CceEEEEecCC
Q 003070 555 --HSEMLMGTLKNYEKLVVLVEDIDLA-----------DPQFIKILADGFETENF---GKVIFVLTKGD 607 (850)
Q Consensus 555 --~~~~l~e~vr~~P~sVvlldeiekA-----------~~~v~~~l~q~~d~G~l---~n~Iii~Tsn~ 607 (850)
.+..+.+..+....+||||||||.. ...+++.|+..++...- .+.+||.|+|.
T Consensus 193 ~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 261 (389)
T 3vfd_A 193 EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR 261 (389)
T ss_dssp HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence 1234555556777789999999876 45667777777774432 36777877753
No 29
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.03 E-value=6.5e-09 Score=113.59 Aligned_cols=121 Identities=14% Similarity=0.175 Sum_probs=81.6
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCC-CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC-------------
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKK-ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND------------- 550 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~-~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~------------- 550 (850)
.++||++++.++...+...+.|+. ...+||.||+|+|||.+|+++|..+- ....++.+.......
T Consensus 45 ~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (368)
T 3uk6_A 45 GMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG-PDTPFTAIAGSEIFSLEMSKTEALTQAF 123 (368)
T ss_dssp TEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC-SSCCEEEEEGGGGSCSSSCHHHHHHHHH
T ss_pred hccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc-ccCCcccccchhhhhcccchhHHHHHHH
Confidence 478999998888877777777754 36788999999999999999999984 334566665433100
Q ss_pred --------------------------CCC-------Cc----hh----hHHHHhhh----CC----CEEEeeccccccCH
Q 003070 551 --------------------------GVS-------SH----SE----MLMGTLKN----YE----KLVVLVEDIDLADP 581 (850)
Q Consensus 551 --------------------------~~~-------~~----~~----~l~e~vr~----~P----~sVvlldeiekA~~ 581 (850)
.+. ++ .+ .+.+++.+ .. ..|||||||+..++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~ 203 (368)
T 3uk6_A 124 RRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI 203 (368)
T ss_dssp HHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH
T ss_pred HHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh
Confidence 000 11 11 22222221 11 25999999999999
Q ss_pred HHHHHHHhhhccCccCceEEEEecCC
Q 003070 582 QFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 582 ~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
..++.|++.+++... +.+|+.|.++
T Consensus 204 ~~~~~L~~~le~~~~-~~~ii~t~~~ 228 (368)
T 3uk6_A 204 ESFSFLNRALESDMA-PVLIMATNRG 228 (368)
T ss_dssp HHHHHHHHHTTCTTC-CEEEEEESCS
T ss_pred HHHHHHHHHhhCcCC-Ceeeeecccc
Confidence 999999999998766 3444444334
No 30
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.02 E-value=3.2e-09 Score=113.34 Aligned_cols=117 Identities=15% Similarity=0.242 Sum_probs=84.9
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCC--CceEEecCccccCCCCCchhhHHHH
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGST--DLLFHIDMRKRNDGVSSHSEMLMGT 562 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~--~~~i~idms~~~~~~~~~~~~l~e~ 562 (850)
.++||++++..+...+.. |+.. .+||.||+|+|||.+|+++|+.+++.. ..++.++.+.... ...+.+.+.+.
T Consensus 26 ~~~g~~~~~~~l~~~l~~---~~~~-~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 100 (327)
T 1iqp_A 26 DIVGQEHIVKRLKHYVKT---GSMP-HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG-INVIREKVKEF 100 (327)
T ss_dssp TCCSCHHHHHHHHHHHHH---TCCC-EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH-HHTTHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHc---CCCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc-hHHHHHHHHHH
Confidence 478999999988877754 3332 499999999999999999999987643 3466666553210 00111234443
Q ss_pred hhh-----CCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 563 LKN-----YEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 563 vr~-----~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.+. ..+.||++||++...+..++.|++.+++.. .+++||+|+|.
T Consensus 101 ~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~-~~~~~i~~~~~ 149 (327)
T 1iqp_A 101 ARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFS-SNVRFILSCNY 149 (327)
T ss_dssp HHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESC
T ss_pred HhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcC-CCCeEEEEeCC
Confidence 333 447899999999999999999999999853 47888998764
No 31
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.01 E-value=5.2e-09 Score=116.85 Aligned_cols=203 Identities=11% Similarity=0.111 Sum_probs=142.2
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC--------C-CC-
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND--------G-VS- 553 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~--------~-~~- 553 (850)
..++|+..++..+.+.+... ...+..+|+.|++|+||+.+|++|..........|+.+||+...+ + ..
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~--a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g 214 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKI--SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKG 214 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHH--TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTT
T ss_pred hhhhhccHHhhHHHHHHHHh--cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCC
Confidence 36888999988888887763 345667799999999999999999999888889999999987521 0 00
Q ss_pred Cc-------hhhHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccC----------ceEEEEecCCCchhhhhhh
Q 003070 554 SH-------SEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTKGDSSNYEERIE 616 (850)
Q Consensus 554 ~~-------~~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~----------n~Iii~Tsn~~~~~~e~~~ 616 (850)
.| .|.+..| -..++|||||+..++.+|..|++++++|++. |+-||+|||..- .+
T Consensus 215 ~~tga~~~~~g~~~~a----~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l--~~--- 285 (387)
T 1ny5_A 215 AFTGAVSSKEGFFELA----DGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNI--KE--- 285 (387)
T ss_dssp SSTTCCSCBCCHHHHT----TTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCH--HH---
T ss_pred CCCCcccccCCceeeC----CCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCH--HH---
Confidence 01 1222222 2469999999999999999999999999874 666777776320 00
Q ss_pred hcccccchhheecccCcccccchhhhhhhhccCCCCCccccccccccccccccCCCcccccccCcccccccccccCCcCc
Q 003070 617 NQDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDD 696 (850)
Q Consensus 617 ~~~~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~~~~s~~~lDLNl~a~e~e~ 696 (850)
..
T Consensus 286 ---------------------------------------~~--------------------------------------- 287 (387)
T 1ny5_A 286 ---------------------------------------LV--------------------------------------- 287 (387)
T ss_dssp ---------------------------------------HH---------------------------------------
T ss_pred ---------------------------------------HH---------------------------------------
Confidence 00
Q ss_pred cCCCCCCCCCCCcccchhhcccCCCCCchhhhcccce-EeccCCCCCchhHHHHHHHHHHHHHHHHHccCCceEEEeCHH
Q 003070 697 EGEQKPGELSPISSDLTRENITNPALSNGFLDLIQNR-FVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEER 775 (850)
Q Consensus 697 ~~~~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~-vvF~~l~~~~~~l~~~i~~~~~~~~~~~l~~~~~~~l~vd~~ 775 (850)
+ +..|+++|+.|+..+ |...||.....++ ..+...+.+.+.+.++.. ...++++
T Consensus 288 ------------------~---~g~fr~dl~~rl~~~~i~lPpLreR~~Di-~~l~~~~l~~~~~~~~~~---~~~~~~~ 342 (387)
T 1ny5_A 288 ------------------K---EGKFREDLYYRLGVIEIEIPPLRERKEDI-IPLANHFLKKFSRKYAKE---VEGFTKS 342 (387)
T ss_dssp ------------------H---TTSSCHHHHHHHTTEEEECCCGGGCHHHH-HHHHHHHHHHHHHHTTCC---CCEECHH
T ss_pred ------------------H---cCCccHHHHHhhcCCeecCCcchhccccH-HHHHHHHHHHHHHHcCCC---CCCCCHH
Confidence 0 145788999999754 6667776531223 223333444555555544 1479999
Q ss_pred HHHHHHhccCCcch-hHHHHHHHHHHh
Q 003070 776 VLEEVLIGSGFFHN-SLFEKWLKEVFQ 801 (850)
Q Consensus 776 ~~e~l~~~~~~~~~-r~le~wie~vl~ 801 (850)
+++.|.... |.|+ |.+++.|+..+.
T Consensus 343 a~~~l~~~~-wpGNvreL~~~i~~~~~ 368 (387)
T 1ny5_A 343 AQELLLSYP-WYGNVRELKNVIERAVL 368 (387)
T ss_dssp HHHHHHHSC-CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC-CCcHHHHHHHHHHHHHH
Confidence 999998875 8874 788888877653
No 32
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.01 E-value=4e-09 Score=116.28 Aligned_cols=121 Identities=15% Similarity=0.138 Sum_probs=86.2
Q ss_pred ccCCCchHHHHHHHHHHHHhh--------hCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCC-
Q 003070 484 ENVPWQFDSIHSIVEVLVECK--------SAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSS- 554 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r--------~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~- 554 (850)
+.|+||++++..|-++|.... .+++...+||.||+|+|||.+|++||..+ ...++.+++++....-.+
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~~~g~ 160 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSKWVGE 160 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCSSTTH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhccccch
Confidence 458999999999999887631 23455678899999999999999999987 467899998875321111
Q ss_pred ---chhhHHHHhhhCCCEEEeecccccc-----------CHHHHHHHHhhhccCcc---CceEEEEecCC
Q 003070 555 ---HSEMLMGTLKNYEKLVVLVEDIDLA-----------DPQFIKILADGFETENF---GKVIFVLTKGD 607 (850)
Q Consensus 555 ---~~~~l~e~vr~~P~sVvlldeiekA-----------~~~v~~~l~q~~d~G~l---~n~Iii~Tsn~ 607 (850)
.+..+.+..+.....||||||||.. ...+++.|+..++.... .+.+||.|+|.
T Consensus 161 ~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~ 230 (357)
T 3d8b_A 161 GEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNR 230 (357)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESC
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCC
Confidence 1223445556677789999999765 33567777777775442 36788887764
No 33
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.00 E-value=2.2e-10 Score=109.97 Aligned_cols=110 Identities=13% Similarity=-0.006 Sum_probs=85.8
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhh
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLK 564 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr 564 (850)
.++||++++..+.+.+...- +...++||.||+|+|||.+|++|+.... .|+.+|++.... ..+.+.+.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~--~~~~~vll~G~~GtGKt~lA~~i~~~~~----~~~~~~~~~~~~------~~~~~~~~ 72 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA--KRTSPVFLTGEAGSPFETVARYFHKNGT----PWVSPARVEYLI------DMPMELLQ 72 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH--TCSSCEEEEEETTCCHHHHHGGGCCTTS----CEECCSSTTHHH------HCHHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHh--CCCCcEEEECCCCccHHHHHHHHHHhCC----CeEEechhhCCh------HhhhhHHH
Confidence 47899999999988887643 3345789999999999999999998653 889999886421 11333333
Q ss_pred hCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 565 NYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 565 ~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.-...+|+||||+...+..+..|++.++++.=.++.||+|||
T Consensus 73 ~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 73 KAEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp HTTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred hCCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 344579999999999999999999999998756888999998
No 34
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.99 E-value=6.8e-10 Score=119.28 Aligned_cols=96 Identities=10% Similarity=0.076 Sum_probs=68.7
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCC----CCCchhhHH-HH---hhhCCCEEEeeccccccC
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG----VSSHSEMLM-GT---LKNYEKLVVLVEDIDLAD 580 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~----~~~~~~~l~-e~---vr~~P~sVvlldeiekA~ 580 (850)
-.-+||.||+|+|||.||++||+.+ .-.++++++++.... .++++..+. .+ +++++.+||||||||++.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 3457788999999999999999998 578999998875321 111221122 22 267788999999999887
Q ss_pred H-------------HHHHHHHhhhccCc------------cCceEEEEecCC
Q 003070 581 P-------------QFIKILADGFETEN------------FGKVIFVLTKGD 607 (850)
Q Consensus 581 ~-------------~v~~~l~q~~d~G~------------l~n~Iii~Tsn~ 607 (850)
+ .+++.|++.||... ..+.+||+|||.
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~ 164 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGND 164 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSS
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCC
Confidence 6 47799999998543 348999999994
No 35
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.97 E-value=3.1e-09 Score=115.03 Aligned_cols=115 Identities=16% Similarity=0.196 Sum_probs=81.2
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcC---CCCceEEecCccccCCCCCchhh-HH
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFG---STDLLFHIDMRKRNDGVSSHSEM-LM 560 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfg---s~~~~i~idms~~~~~~~~~~~~-l~ 560 (850)
.++||++++..+..++.. |+... +||.||+|+|||.+|++||..+.+ ....++.++.+... ..+++.. +.
T Consensus 38 ~i~g~~~~~~~l~~~l~~---~~~~~-~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 111 (353)
T 1sxj_D 38 EVTAQDHAVTVLKKTLKS---ANLPH-MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER--GISIVREKVK 111 (353)
T ss_dssp TCCSCCTTHHHHHHHTTC---TTCCC-EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC--CHHHHTTHHH
T ss_pred HhhCCHHHHHHHHHHHhc---CCCCE-EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc--chHHHHHHHH
Confidence 478999988887777643 33223 899999999999999999999864 23456777765421 1111111 11
Q ss_pred HHh---------------hhCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 561 GTL---------------KNYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 561 e~v---------------r~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
... ...++.||+|||++...+..++.|++.|++.. .++.||+++|
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~-~~~~~il~~~ 171 (353)
T 1sxj_D 112 NFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS-GVTRFCLICN 171 (353)
T ss_dssp HHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-TTEEEEEEES
T ss_pred HHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC-CCceEEEEeC
Confidence 111 12356899999999999999999999999865 3677777775
No 36
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=98.96 E-value=5.7e-09 Score=112.92 Aligned_cols=104 Identities=11% Similarity=0.056 Sum_probs=64.7
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCC----CCceEEecCccccC----------
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGS----TDLLFHIDMRKRND---------- 550 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs----~~~~i~idms~~~~---------- 550 (850)
.|+||++++..+..++. ....+++||.||+|+|||.+|++||..+-.. ... +++.....
T Consensus 25 ~i~G~~~~~~~l~~~~~----~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 97 (350)
T 1g8p_A 25 AIVGQEDMKLALLLTAV----DPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCP---VSSPNVEMIPDWATVLST 97 (350)
T ss_dssp GSCSCHHHHHHHHHHHH----CGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCT---TCCSSGGGSCTTCCCSCC
T ss_pred hccChHHHHHHHHHHhh----CCCCceEEEECCCCccHHHHHHHHHHhCcccccccccc---ccccccccccchhhhhcc
Confidence 37899887665433322 2233569999999999999999999987420 011 11111000
Q ss_pred -----------CCCCc-----hhh--HHHHhh------------hCCCEEEeeccccccCHHHHHHHHhhhccCc
Q 003070 551 -----------GVSSH-----SEM--LMGTLK------------NYEKLVVLVEDIDLADPQFIKILADGFETEN 595 (850)
Q Consensus 551 -----------~~~~~-----~~~--l~e~vr------------~~P~sVvlldeiekA~~~v~~~l~q~~d~G~ 595 (850)
-+.+. .+. +..++. ...+.|||||||++..+.+++.|++.+++|.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~ 172 (350)
T 1g8p_A 98 NVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGE 172 (350)
T ss_dssp CEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSE
T ss_pred ccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCc
Confidence 00111 110 111111 1126799999999999999999999999986
No 37
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.96 E-value=4.5e-09 Score=119.75 Aligned_cols=109 Identities=13% Similarity=0.114 Sum_probs=72.9
Q ss_pred ccCCCchHHH---HHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCch-hhH
Q 003070 484 ENVPWQFDSI---HSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS-EML 559 (850)
Q Consensus 484 ~~V~gQ~eai---~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~-~~l 559 (850)
+.|+||++++ ..+..+|.. |+. ..+||.||+|+|||.+|++||..+ ...++.++..... ...+ +.+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~---~~~-~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~a~~~~---~~~ir~~~ 95 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEA---GHL-HSMILWGPPGTGKTTLAEVIARYA---NADVERISAVTSG---VKEIREAI 95 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHH---TCC-CEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEETTTCC---HHHHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHc---CCC-cEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEEeccCC---HHHHHHHH
Confidence 3589999999 667666664 333 689999999999999999999987 4567777644211 0011 122
Q ss_pred HHHh---hhCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEec
Q 003070 560 MGTL---KNYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTK 605 (850)
Q Consensus 560 ~e~v---r~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Ts 605 (850)
..+. ....+.|||||||+......++.|++.+|+|. .+||.++
T Consensus 96 ~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~---v~lI~at 141 (447)
T 3pvs_A 96 ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT---ITFIGAT 141 (447)
T ss_dssp HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTS---CEEEEEE
T ss_pred HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCc---eEEEecC
Confidence 2221 22457899999999999999999999999975 4556544
No 38
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.95 E-value=1.5e-08 Score=110.79 Aligned_cols=124 Identities=11% Similarity=0.071 Sum_probs=94.8
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCe--EEEEecCCchHHHHHHHHHHHHhcCC-CCceEEecCccccC----------
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKAT--WFLLQGNDTIGKRRLALSIAESVFGS-TDLLFHIDMRKRND---------- 550 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~--~~lf~Gp~gvGKt~lA~~LA~~lfgs-~~~~i~idms~~~~---------- 550 (850)
+.++|+++.+..+...+.....|.... .++|.||.|+|||.++++++..+... .-.++.++++....
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHH
Confidence 468999999999999998887776555 88999999999999999999999776 46788888654321
Q ss_pred ----C-C-CC-----chhhHHHHhhh-CCCEEEeeccccccCHHHHHHHHhhhccCcc---CceEEEEecCC
Q 003070 551 ----G-V-SS-----HSEMLMGTLKN-YEKLVVLVEDIDLADPQFIKILADGFETENF---GKVIFVLTKGD 607 (850)
Q Consensus 551 ----~-~-~~-----~~~~l~e~vr~-~P~sVvlldeiekA~~~v~~~l~q~~d~G~l---~n~Iii~Tsn~ 607 (850)
. + .+ ..+.+.+.+.. ....||+|||++..++.++..|++.++...- .+..||+++|.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~ 168 (389)
T 1fnn_A 97 SLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHN 168 (389)
T ss_dssp HTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred HhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECC
Confidence 0 0 11 11234444443 3367999999999999999999999986543 57888888864
No 39
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.95 E-value=3.5e-09 Score=124.83 Aligned_cols=48 Identities=25% Similarity=0.220 Sum_probs=40.8
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCC
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGST 537 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~ 537 (850)
..++||++++..|..++.. | ..++|.||+|+|||+||++||..+....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~---g---~~vll~Gp~GtGKTtlar~ia~~l~~~~ 88 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQ---K---RHVLLIGEPGTGKSMLGQAMAELLPTET 88 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHT---T---CCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred ceEECchhhHhhccccccC---C---CEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence 4679999999988888763 2 3788999999999999999999986554
No 40
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.95 E-value=4.8e-09 Score=111.49 Aligned_cols=117 Identities=15% Similarity=0.214 Sum_probs=85.2
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCC--CceEEecCccccCCCCCchhhHHHH
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGST--DLLFHIDMRKRNDGVSSHSEMLMGT 562 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~--~~~i~idms~~~~~~~~~~~~l~e~ 562 (850)
.++||++++..+.+.+.. ++. ..+||.||+|+|||.+|+++|+.+++.. ..++.++.+.... .....+.+.+.
T Consensus 18 ~~~g~~~~~~~l~~~l~~---~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 92 (319)
T 2chq_A 18 EVVGQDEVIQRLKGYVER---KNI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG-IDVVRHKIKEF 92 (319)
T ss_dssp GSCSCHHHHHHHHTTTTT---TCC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC-TTTSSHHHHHH
T ss_pred HHhCCHHHHHHHHHHHhC---CCC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC-hHHHHHHHHHH
Confidence 378888888877776643 332 2389999999999999999999997653 3477787765321 11122233333
Q ss_pred hh-----hCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 563 LK-----NYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 563 vr-----~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.+ ..++.||+|||+++.....++.|++.+++.. .+++||+|+|.
T Consensus 93 ~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~-~~~~~i~~~~~ 141 (319)
T 2chq_A 93 ARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYS-KSCRFILSCNY 141 (319)
T ss_dssp HHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSS-SSEEEEEEESC
T ss_pred HhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcC-CCCeEEEEeCC
Confidence 32 2457899999999999999999999998743 47889998864
No 41
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.94 E-value=2.6e-08 Score=103.31 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=76.6
Q ss_pred ccCCCchHHHHHHHHHHHHhhh-------C-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCc
Q 003070 484 ENVPWQFDSIHSIVEVLVECKS-------A-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSH 555 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~-------g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~ 555 (850)
+.|+|++++...|-+.+...+. | ++...+||.||+|+|||.+|++||..+ ...++.++++.+...-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~~~ 82 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEVIGGL 82 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSSSTTH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhhccCh
Confidence 3578888888888777655432 2 234568899999999999999999987 3578999988753221111
Q ss_pred ----hhhHHHHhhhCCCEEEeecccccc------------CHHH---HHHHHhhhcc-CccCceEEEEecCC
Q 003070 556 ----SEMLMGTLKNYEKLVVLVEDIDLA------------DPQF---IKILADGFET-ENFGKVIFVLTKGD 607 (850)
Q Consensus 556 ----~~~l~e~vr~~P~sVvlldeiekA------------~~~v---~~~l~q~~d~-G~l~n~Iii~Tsn~ 607 (850)
+..+.+..+.+..+||+|||||.. +... .+.|++.++. +.-.+.+||+|+|.
T Consensus 83 ~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~ 154 (262)
T 2qz4_A 83 GAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNR 154 (262)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESC
T ss_pred hHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCC
Confidence 123444455666789999999987 3333 3344444443 22347788888864
No 42
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.91 E-value=7.5e-09 Score=110.20 Aligned_cols=116 Identities=11% Similarity=0.190 Sum_probs=84.0
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCC--CceEEecCccccCCCCCchhhHHHH
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGST--DLLFHIDMRKRNDGVSSHSEMLMGT 562 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~--~~~i~idms~~~~~~~~~~~~l~e~ 562 (850)
.++||++++..+.+.+. .++... ++|.||+|+|||.+|+++|+.+++.. ..++.++.+... ....+..+.+.
T Consensus 22 ~~~g~~~~~~~l~~~l~---~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~ 95 (323)
T 1sxj_B 22 DIVGNKETIDRLQQIAK---DGNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR--GIDVVRNQIKH 95 (323)
T ss_dssp GCCSCTHHHHHHHHHHH---SCCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC--SHHHHHTHHHH
T ss_pred HHHCCHHHHHHHHHHHH---cCCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc--ChHHHHHHHHH
Confidence 47899999988888765 344333 89999999999999999999986532 346777755421 11111223333
Q ss_pred hh-------hCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 563 LK-------NYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 563 vr-------~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
+. ..++.||+|||+++.....++.|++.+++.. .+++||+|+|.
T Consensus 96 ~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-~~~~~il~~~~ 146 (323)
T 1sxj_B 96 FAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYS-NSTRFAFACNQ 146 (323)
T ss_dssp HHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTT-TTEEEEEEESC
T ss_pred HHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccC-CCceEEEEeCC
Confidence 33 3357899999999999999999999999853 47888888864
No 43
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.90 E-value=7.5e-09 Score=113.27 Aligned_cols=118 Identities=10% Similarity=0.104 Sum_probs=87.3
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCC--------CCceEEecCcccc------
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGS--------TDLLFHIDMRKRN------ 549 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs--------~~~~i~idms~~~------ 549 (850)
+.++|+++.+..+...+.....+.....++|.||.|+|||.+|+++++.+... ...++.+++....
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 77999999999999999888777666789999999999999999999987433 5678888865422
Q ss_pred ---------CCCC--------CchhhHHHHhhhCCCEEEeeccccccCH----HH-HHHHHhhhccCccCceEEEEecCC
Q 003070 550 ---------DGVS--------SHSEMLMGTLKNYEKLVVLVEDIDLADP----QF-IKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 550 ---------~~~~--------~~~~~l~e~vr~~P~sVvlldeiekA~~----~v-~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
..+. .....+.+.++.++. ||+||||+.... ++ +..|++.. .+.+||+|+|.
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~~~~~l~~l~~~~-----~~~~iI~~t~~ 173 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRGGDIVLYQLLRSD-----ANISVIMISND 173 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTTSHHHHHHHHTSS-----SCEEEEEECSS
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCCCceeHHHHhcCC-----cceEEEEEECC
Confidence 0001 113356666766666 999999998753 33 44444443 78999999874
No 44
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.89 E-value=5.7e-08 Score=105.80 Aligned_cols=116 Identities=19% Similarity=0.237 Sum_probs=84.0
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC---------------------ceEEe
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD---------------------LLFHI 543 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~---------------------~~i~i 543 (850)
.++||++++..+..++.. |+....++|.||.|+|||.+|+++|+.+..... .++.+
T Consensus 17 ~~vg~~~~~~~L~~~l~~---~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 93 (373)
T ss_dssp TSCSCHHHHHHHHHHHHH---TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEE
T ss_pred hccCcHHHHHHHHHHHHh---CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEe
Confidence 479999999999988864 443346789999999999999999998864321 12333
Q ss_pred cCccccCCCCCchhhHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 544 DMRKRNDGVSSHSEMLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 544 dms~~~~~~~~~~~~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+.... ....-+..+.+.+...| +.||+|||+++.+...++.|+..+++- -.+++||++++
T Consensus 94 ~~~~~--~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~-~~~~~~Il~~~ 157 (373)
T 1jr3_A 94 DAASR--TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-PEHVKFLLATT 157 (373)
T ss_dssp ETTCS--CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSC-CSSEEEEEEES
T ss_pred ccccc--CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcC-CCceEEEEEeC
Confidence 22210 01112335566666554 789999999999999999999999873 24788898886
No 45
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.89 E-value=8.4e-08 Score=96.14 Aligned_cols=114 Identities=19% Similarity=0.248 Sum_probs=79.2
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC---------------------ceEEe
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD---------------------LLFHI 543 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~---------------------~~i~i 543 (850)
.++||++++..+...+.. ++....++|.||.|+|||.+|+++|+.+..... .++.+
T Consensus 24 ~~~g~~~~~~~l~~~l~~---~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (250)
T 1njg_A 24 DVVGQEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEI 100 (250)
T ss_dssp GCCSCHHHHHHHHHHHHH---TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEE
T ss_pred HHhCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEe
Confidence 578999999988888764 443457889999999999999999988754321 11111
Q ss_pred cCccccCCCCCchhhH---HHHhhh----CCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 544 DMRKRNDGVSSHSEML---MGTLKN----YEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 544 dms~~~~~~~~~~~~l---~e~vr~----~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
+... ....+.+ .+.+.. ....||+|||++..++..++.|++.+++.. .+++||+|+|.
T Consensus 101 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~-~~~~~i~~t~~ 165 (250)
T 1njg_A 101 DAAS-----RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-EHVKFLLATTD 165 (250)
T ss_dssp ETTC-----GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCC-TTEEEEEEESC
T ss_pred cCcc-----cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCC-CceEEEEEeCC
Confidence 1111 0112223 333322 236799999999999999999999998752 37888888753
No 46
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.87 E-value=8.5e-09 Score=108.77 Aligned_cols=120 Identities=15% Similarity=0.148 Sum_probs=86.5
Q ss_pred cCCCchHHHHHHHHHHHHhhh--------C-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCC-
Q 003070 485 NVPWQFDSIHSIVEVLVECKS--------A-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSS- 554 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~--------g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~- 554 (850)
.++|+++++..|.+.+..... | .+...+||.||+|+|||.+|++||..+ ...++++++++....-.+
T Consensus 18 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~~~~~ 94 (285)
T 3h4m_A 18 DIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKKFIGE 94 (285)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCCCSTTH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHHhccch
Confidence 478888888888887765422 2 344568899999999999999999987 467888888765321111
Q ss_pred ---chhhHHHHhhhCCCEEEeecccccc-----------CHHHHHHHHhhhccCc----cCceEEEEecCC
Q 003070 555 ---HSEMLMGTLKNYEKLVVLVEDIDLA-----------DPQFIKILADGFETEN----FGKVIFVLTKGD 607 (850)
Q Consensus 555 ---~~~~l~e~vr~~P~sVvlldeiekA-----------~~~v~~~l~q~~d~G~----l~n~Iii~Tsn~ 607 (850)
.+..+.+..+....+||+||||+.. +...+..|.+.++.-. -.+.+||+|+|.
T Consensus 95 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~ 165 (285)
T 3h4m_A 95 GASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNR 165 (285)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSC
T ss_pred HHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCC
Confidence 1223445556666689999999985 7777888877776421 238899999984
No 47
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.85 E-value=4e-09 Score=121.77 Aligned_cols=127 Identities=16% Similarity=0.154 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcccc--
Q 003070 472 KLQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRN-- 549 (850)
Q Consensus 472 ~~~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~-- 549 (850)
.+.+..|.+.|.+.|+||++++..+..++.. | +-+||.||+|+|||.||++||..+ +....|+.+.+....
T Consensus 10 ~~~~~~l~~~l~~~ivGq~~~i~~l~~al~~---~---~~VLL~GpPGtGKT~LAraLa~~l-~~~~~f~~~~~~~~t~~ 82 (500)
T 3nbx_X 10 AERISRLSSSLEKGLYERSHAIRLCLLAALS---G---ESVFLLGPPGIAKSLIARRLKFAF-QNARAFEYLMTRFSTPE 82 (500)
T ss_dssp HHHHHHHHHHHHTTCSSCHHHHHHHHHHHHH---T---CEEEEECCSSSSHHHHHHHGGGGB-SSCCEEEEECCTTCCHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc---C---CeeEeecCchHHHHHHHHHHHHHH-hhhhHHHHHHHhcCCHH
Confidence 4578899999999999999999888777653 2 478999999999999999999987 333444444443210
Q ss_pred C--C-CCCc----hhhHHHHhhhC---CCEEEeeccccccCHHHHHHHHhhhccCccC---------ceEEEEecC
Q 003070 550 D--G-VSSH----SEMLMGTLKNY---EKLVVLVEDIDLADPQFIKILADGFETENFG---------KVIFVLTKG 606 (850)
Q Consensus 550 ~--~-~~~~----~~~l~e~vr~~---P~sVvlldeiekA~~~v~~~l~q~~d~G~l~---------n~Iii~Tsn 606 (850)
+ + ..++ .+.+..+ .+. ...|+|||||+++++.+++.|+++|++|.+. .-++|+|||
T Consensus 83 dL~G~~~~~~~~~~g~~~~~-~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN 157 (500)
T 3nbx_X 83 EVFGPLSIQALKDEGRYERL-TSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASN 157 (500)
T ss_dssp HHHCCBC----------CBC-CTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEES
T ss_pred HhcCcccHHHHhhchhHHhh-hccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccc
Confidence 0 0 0000 0111111 111 1459999999999999999999999999863 235688888
No 48
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.82 E-value=1.1e-08 Score=110.81 Aligned_cols=123 Identities=12% Similarity=0.130 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC--
Q 003070 473 LQRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND-- 550 (850)
Q Consensus 473 ~~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~-- 550 (850)
..+..+...+...|+||++++..+..++.. | ..+||.||+|+|||.+|++||..+- ..+++++++....
T Consensus 16 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~---~---~~vll~G~pGtGKT~la~~la~~~~---~~~~~i~~~~~~~~~ 86 (331)
T 2r44_A 16 NKIKEVIDEVGKVVVGQKYMINRLLIGICT---G---GHILLEGVPGLAKTLSVNTLAKTMD---LDFHRIQFTPDLLPS 86 (331)
T ss_dssp HHHHHHHHHHTTTCCSCHHHHHHHHHHHHH---T---CCEEEESCCCHHHHHHHHHHHHHTT---CCEEEEECCTTCCHH
T ss_pred HHHHHHHHHhccceeCcHHHHHHHHHHHHc---C---CeEEEECCCCCcHHHHHHHHHHHhC---CCeEEEecCCCCChh
Confidence 356778888999999999999988887764 2 4799999999999999999999873 4577777642110
Q ss_pred ---CCC---CchhhHHHHhhhCC--CEEEeeccccccCHHHHHHHHhhhccCccC----------ceEEEEecC
Q 003070 551 ---GVS---SHSEMLMGTLKNYE--KLVVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTKG 606 (850)
Q Consensus 551 ---~~~---~~~~~l~e~vr~~P--~sVvlldeiekA~~~v~~~l~q~~d~G~l~----------n~Iii~Tsn 606 (850)
+.. ...+.+ ..+..| ..|+|||||+++++.+++.|+++|++|.+. +.+||.|+|
T Consensus 87 ~l~g~~~~~~~~~~~--~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~n 158 (331)
T 2r44_A 87 DLIGTMIYNQHKGNF--EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQN 158 (331)
T ss_dssp HHHEEEEEETTTTEE--EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEEC
T ss_pred hcCCceeecCCCCce--EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecC
Confidence 000 000000 011222 269999999999999999999999999752 567777887
No 49
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.81 E-value=5.2e-08 Score=105.79 Aligned_cols=117 Identities=13% Similarity=0.174 Sum_probs=77.0
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEE----------------------
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFH---------------------- 542 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~---------------------- 542 (850)
.++||++++..+..++. +.|+... ++|.||+|+|||++|++||..+++....-+.
T Consensus 15 ~~vg~~~~~~~l~~~~~--~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 15 ALSHNEELTNFLKSLSD--QPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp GCCSCHHHHHHHHTTTT--CTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred HhcCCHHHHHHHHHHHh--hCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 47899988887776652 2344334 8899999999999999999977764432222
Q ss_pred ----ecCccccCCCCC--chh-hHHHHhh-------------hCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEE
Q 003070 543 ----IDMRKRNDGVSS--HSE-MLMGTLK-------------NYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFV 602 (850)
Q Consensus 543 ----idms~~~~~~~~--~~~-~l~e~vr-------------~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii 602 (850)
++.+.. .... .+. .+.+... ...+.||+|||++.-++..++.|++.|++- -.+++||
T Consensus 92 ~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~-~~~~~~I 168 (354)
T 1sxj_E 92 YHLEITPSDM--GNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY-SKNIRLI 168 (354)
T ss_dssp SEEEECCC------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHS-TTTEEEE
T ss_pred ceEEecHhhc--CCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh-cCCCEEE
Confidence 222111 0000 011 2222222 225679999999999999999999999974 2478889
Q ss_pred EecCC
Q 003070 603 LTKGD 607 (850)
Q Consensus 603 ~Tsn~ 607 (850)
++|+.
T Consensus 169 l~t~~ 173 (354)
T 1sxj_E 169 MVCDS 173 (354)
T ss_dssp EEESC
T ss_pred EEeCC
Confidence 98864
No 50
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.81 E-value=2e-08 Score=109.70 Aligned_cols=116 Identities=16% Similarity=0.215 Sum_probs=87.1
Q ss_pred CCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCC---------------------CceEEec
Q 003070 486 VPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGST---------------------DLLFHID 544 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~---------------------~~~i~id 544 (850)
.+||++++..+..++. .|+.--.+||.||.|+|||.+|+++|+.++... ..++.++
T Consensus 4 ~pw~~~~~~~l~~~i~---~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~ 80 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQ---AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLA 80 (334)
T ss_dssp CGGGHHHHHHHHHHHH---TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEEC
T ss_pred CCchHHHHHHHHHHHH---cCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEe
Confidence 5899999999988876 455445678999999999999999999998653 2244444
Q ss_pred CccccCCCCCchh---hHHHHhhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 545 MRKRNDGVSSHSE---MLMGTLKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 545 ms~~~~~~~~~~~---~l~e~vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
..+. +..--++ .+.+.+...| |.||++||+|+.....+|.|+..+|+.. .+++||+++|.
T Consensus 81 ~~~~--~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~-~~~~~Il~t~~ 147 (334)
T 1a5t_A 81 PEKG--KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPP-AETWFFLATRE 147 (334)
T ss_dssp CCTT--CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCC-TTEEEEEEESC
T ss_pred cccc--CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCC-CCeEEEEEeCC
Confidence 3210 0011133 4556666655 7899999999999999999999999853 48999999984
No 51
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.81 E-value=7.4e-08 Score=106.96 Aligned_cols=200 Identities=12% Similarity=0.143 Sum_probs=135.4
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCC----------C--
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG----------V-- 552 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~----------~-- 552 (850)
.++|+..++..+...+.... ..+..+++.|++|+||+.+|+++...-.. ...|+.+||....+. .
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a--~~~~~vli~GesGtGKe~lAr~ih~~s~r-~~~fv~vnc~~~~~~~~~~~lfg~~~g~ 206 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA--KSKAPVLITGESGTGKEIVARLIHRYSGR-KGAFVDLNCASIPQELAESELFGHEKGA 206 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH--TSCSCEEEECCTTSSHHHHHHHHHHHHCC-CSCEEEEESSSSCTTTHHHHHHEECSCS
T ss_pred cccccchHHHHHHhhhhhhh--ccchhheEEeCCCchHHHHHHHHHHhccc-cCCcEEEEcccCChHHHHHHhcCccccc
Confidence 46788888877777766543 34567899999999999999999987644 344999999975321 0
Q ss_pred -CCc----hhhHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccC----------ceEEEEecCCCchhhhhhhh
Q 003070 553 -SSH----SEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG----------KVIFVLTKGDSSNYEERIEN 617 (850)
Q Consensus 553 -~~~----~~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~----------n~Iii~Tsn~~~~~~e~~~~ 617 (850)
.|. .|.+..+ ....+|||||+..++.+|..|++++++|.+. |+-||.+||..- .
T Consensus 207 ~tga~~~~~g~~~~a----~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l--~----- 275 (368)
T 3dzd_A 207 FTGALTRKKGKLELA----DQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNL--E----- 275 (368)
T ss_dssp SSSCCCCEECHHHHT----TTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCH--H-----
T ss_pred cCCcccccCChHhhc----CCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCH--H-----
Confidence 111 1223222 2358999999999999999999999999974 455666555210 0
Q ss_pred cccccchhheecccCcccccchhhhhhhhccCCCCCccccccccccccccccCCCcccccccCcccccccccccCCcCcc
Q 003070 618 QDSVINMTLKVNERNQNFDHKRKAEWEFANKTKSPRIDEKEDATSVTIDNVSSGNKKDFSRQSSFNTLDLNMKADDEDDE 697 (850)
Q Consensus 618 ~~~~~~l~l~~~~~~~~~~~krk~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~kr~~~~~~s~~~lDLNl~a~e~e~~ 697 (850)
+.
T Consensus 276 --------------------------------------~~---------------------------------------- 277 (368)
T 3dzd_A 276 --------------------------------------EE---------------------------------------- 277 (368)
T ss_dssp --------------------------------------HH----------------------------------------
T ss_pred --------------------------------------HH----------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCCCcccchhhcccCCCCCchhhhcccce-EeccCCCCCchhHHHHHHHHHHHHHHHHHccCCceEEEeCHHH
Q 003070 698 GEQKPGELSPISSDLTRENITNPALSNGFLDLIQNR-FVFNRNSSNDGKITGLFLAKMKESFDEIFKRQNKVNFSVEERV 776 (850)
Q Consensus 698 ~~~~~~~~~~~~sd~~~e~~~~~~~~~efLnriD~~-vvF~~l~~~~~~l~~~i~~~~~~~~~~~l~~~~~~~l~vd~~~ 776 (850)
+ ....|+++|+.|+... |.+.||.....++. .+...+.+.+.+.++.. ...+++++
T Consensus 278 ----------------v---~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~-~l~~~~l~~~~~~~~~~---~~~~~~~a 334 (368)
T 3dzd_A 278 ----------------I---KKGNFREDLYYRLSVFQIYLPPLRERGKDVI-LLAEYFLKKFAKEYKKN---CFELSEET 334 (368)
T ss_dssp ----------------H---HTTSSCHHHHHHHTSEEEECCCGGGSTTHHH-HHHHHHHHHHHHHTTCC---CCCBCHHH
T ss_pred ----------------H---HcCCccHHHHHHhCCeEEeCCChhhchhhHH-HHHHHHHHHHHHHcCCC---CCCcCHHH
Confidence 0 0146889999999974 77888887322332 33333445566666544 26799999
Q ss_pred HHHHHhccCCcch-hHHHHHHHHHH
Q 003070 777 LEEVLIGSGFFHN-SLFEKWLKEVF 800 (850)
Q Consensus 777 ~e~l~~~~~~~~~-r~le~wie~vl 800 (850)
++.|.... |.|+ |.+++.|+..+
T Consensus 335 ~~~L~~~~-wpGNvreL~n~i~~~~ 358 (368)
T 3dzd_A 335 KEYLMKQE-WKGNVRELKNLIERAV 358 (368)
T ss_dssp HHHHHTCC-CTTHHHHHHHHHHHHH
T ss_pred HHHHHhCC-CCcHHHHHHHHHHHHH
Confidence 99998875 8874 55666666543
No 52
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.80 E-value=4.4e-08 Score=99.30 Aligned_cols=93 Identities=13% Similarity=0.096 Sum_probs=63.6
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhhhCCCEEEeeccccccCHHH--HH
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQF--IK 585 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~~P~sVvlldeiekA~~~v--~~ 585 (850)
....++|.||+|+|||.+|+++|..+......++.+++++..... ...+ +.+ ..+.||+|||++...... ++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~--~~~~vliiDe~~~~~~~~~~~~ 124 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIS---TALL-EGL--EQFDLICIDDVDAVAGHPLWEE 124 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSC---GGGG-TTG--GGSSEEEEETGGGGTTCHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH---HHHH-Hhc--cCCCEEEEeccccccCCHHHHH
Confidence 446899999999999999999999987666778888887653211 1111 112 224699999999886544 77
Q ss_pred HHHhhhccCccCce-EEEEecC
Q 003070 586 ILADGFETENFGKV-IFVLTKG 606 (850)
Q Consensus 586 ~l~q~~d~G~l~n~-Iii~Tsn 606 (850)
.|++.++.-.-.+. .||+|+|
T Consensus 125 ~l~~~l~~~~~~~~~~ii~~~~ 146 (242)
T 3bos_A 125 AIFDLYNRVAEQKRGSLIVSAS 146 (242)
T ss_dssp HHHHHHHHHHHHCSCEEEEEES
T ss_pred HHHHHHHHHHHcCCCeEEEEcC
Confidence 77777654322222 3666665
No 53
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=4.7e-08 Score=106.48 Aligned_cols=113 Identities=13% Similarity=0.214 Sum_probs=82.6
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC--ceEEecCccccCCCCCchhhHHH-
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD--LLFHIDMRKRNDGVSSHSEMLMG- 561 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~--~~i~idms~~~~~~~~~~~~l~e- 561 (850)
.++||++++..+...|.. |+... ++|.||.|+|||.+|++||..+++..- .++.++.+.. .+ ++.+.+
T Consensus 26 ~~~g~~~~~~~L~~~i~~---g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~----~~-~~~ir~~ 96 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDE---GKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD----RG-IDVVRNQ 96 (340)
T ss_dssp GCCSCHHHHHHHHHHHHT---TCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC----CS-HHHHHTH
T ss_pred HhcCcHHHHHHHHHHHhc---CCCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc----cc-HHHHHHH
Confidence 367999999988887763 43222 899999999999999999999987532 3555555432 11 222222
Q ss_pred --Hhh--h----CCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 562 --TLK--N----YEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 562 --~vr--~----~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.+. . ..+.|+++||++......++.|+..+|+.. .+++||+++|.
T Consensus 97 i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-~~~~~il~~n~ 149 (340)
T 1sxj_C 97 IKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYT-KNTRFCVLANY 149 (340)
T ss_dssp HHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESC
T ss_pred HHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCC-CCeEEEEEecC
Confidence 122 1 237899999999999999999999999854 47888898874
No 54
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.75 E-value=2.4e-08 Score=105.18 Aligned_cols=123 Identities=18% Similarity=0.167 Sum_probs=83.4
Q ss_pred HhccCCCchHHHHHHHHH----HHHhhh--CCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCC--
Q 003070 482 LQENVPWQFDSIHSIVEV----LVECKS--AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVS-- 553 (850)
Q Consensus 482 L~~~V~gQ~eai~~Ia~a----v~~~r~--gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~-- 553 (850)
+...+++|.+++..|... +...+. ..+...+||.||+|+|||.+|++||..+ ...++.++.+..--+..
T Consensus 31 ~~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~~~~~~g~~~~ 107 (272)
T 1d2n_A 31 IMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSPDKMIGFSET 107 (272)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEECGGGCTTCCHH
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeCHHHhcCCchH
Confidence 445678888887777764 222221 3456789999999999999999999985 35688887664211100
Q ss_pred ---CchhhHHHHhhhCCCEEEeecccccc----------CHHHHHHHHhhhccCc--cCceEEEEecCC
Q 003070 554 ---SHSEMLMGTLKNYEKLVVLVEDIDLA----------DPQFIKILADGFETEN--FGKVIFVLTKGD 607 (850)
Q Consensus 554 ---~~~~~l~e~vr~~P~sVvlldeiekA----------~~~v~~~l~q~~d~G~--l~n~Iii~Tsn~ 607 (850)
..+..+.+..++.+..||+|||||.. ...+++.|...++.-. -.+.+||.|+|.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~ 176 (272)
T 1d2n_A 108 AKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSR 176 (272)
T ss_dssp HHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESC
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCC
Confidence 01122333345577899999999985 6777788877776432 236788888875
No 55
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.74 E-value=3.7e-08 Score=105.91 Aligned_cols=120 Identities=13% Similarity=0.124 Sum_probs=85.9
Q ss_pred cCCCchHHHHHHHHHHHHh--------hhC-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcccc----CC
Q 003070 485 NVPWQFDSIHSIVEVLVEC--------KSA-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRN----DG 551 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~--------r~g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~----~~ 551 (850)
.|+|+++++..+-++|... +.| ++...+||.||+|+|||.+|++||..+ ...++.++++... ..
T Consensus 16 di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~~l~~~~~g~ 92 (301)
T 3cf0_A 16 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTMWFGE 92 (301)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhHHHHhhhcCc
Confidence 3788888888888888753 223 455678999999999999999999987 3678999876531 11
Q ss_pred CCCchhhHHHHhhhCCCEEEeeccccccC--------------HHHHHHHHhhhccC-ccCceEEEEecCC
Q 003070 552 VSSHSEMLMGTLKNYEKLVVLVEDIDLAD--------------PQFIKILADGFETE-NFGKVIFVLTKGD 607 (850)
Q Consensus 552 ~~~~~~~l~e~vr~~P~sVvlldeiekA~--------------~~v~~~l~q~~d~G-~l~n~Iii~Tsn~ 607 (850)
....+..+.+..+....+||||||||... ..+++.|++.|+.- .-.+.+||+|||.
T Consensus 93 ~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~ 163 (301)
T 3cf0_A 93 SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR 163 (301)
T ss_dssp CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESC
T ss_pred hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCC
Confidence 11223344455566667899999999632 34678888888742 2348999999984
No 56
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.74 E-value=1.2e-08 Score=98.89 Aligned_cols=115 Identities=14% Similarity=0.208 Sum_probs=80.8
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcC-------CCCceEEecCccccCCCCCch
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFG-------STDLLFHIDMRKRNDGVSSHS 556 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfg-------s~~~~i~idms~~~~~~~~~~ 556 (850)
+.++|+++++..+.+.+.. .....++|.||.|+|||.+|+++|+.+.. ....++.++++...... .+.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 96 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR----RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGA-KYR 96 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS----SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTT-CSH
T ss_pred cccccchHHHHHHHHHHhc----CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccC-Ccc
Confidence 4688999988888887654 22356789999999999999999998854 24567777776542111 122
Q ss_pred h-------hHHHHh-hhCCCEEEeeccccccC--------HHHHHHHHhhhccCccCceEEEEecC
Q 003070 557 E-------MLMGTL-KNYEKLVVLVEDIDLAD--------PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 557 ~-------~l~e~v-r~~P~sVvlldeiekA~--------~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+ .+.+.+ +.....||+|||++... ..+++.|.+.++.+. .+||+|+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~---~~~i~~~~ 159 (195)
T 1jbk_A 97 GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGE---LHCVGATT 159 (195)
T ss_dssp HHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTS---CCEEEEEC
T ss_pred ccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCC---eEEEEeCC
Confidence 2 222222 34557799999999984 566888888888764 56777776
No 57
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.73 E-value=2.8e-08 Score=108.18 Aligned_cols=124 Identities=17% Similarity=0.152 Sum_probs=84.5
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcC------CCCceEEecCccccC-------
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFG------STDLLFHIDMRKRND------- 550 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfg------s~~~~i~idms~~~~------- 550 (850)
+.++|+++.+..+...+.....+.....++|.||+|+|||.+|+++++.+.. ..-.++.+++.....
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 5688999999999888876654555678899999999999999999998843 256788888764311
Q ss_pred -------C--CCC-----chhhHHHHhhhC-CCEEEeeccccccCHH--HHHHHHhhhcc---Cc-cCceEEEEecCC
Q 003070 551 -------G--VSS-----HSEMLMGTLKNY-EKLVVLVEDIDLADPQ--FIKILADGFET---EN-FGKVIFVLTKGD 607 (850)
Q Consensus 551 -------~--~~~-----~~~~l~e~vr~~-P~sVvlldeiekA~~~--v~~~l~q~~d~---G~-l~n~Iii~Tsn~ 607 (850)
. ..+ ..+.+.+.++.. ...||+||||+..... .+..|.+.++. .+ -.+.+||+|+|.
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 0 011 123455555443 3669999999998765 56666655543 22 336788888864
No 58
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.70 E-value=1.8e-08 Score=97.86 Aligned_cols=115 Identities=13% Similarity=0.197 Sum_probs=82.0
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcC-------CCCceEEecCccccCCCCCch
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFG-------STDLLFHIDMRKRNDGVSSHS 556 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfg-------s~~~~i~idms~~~~~~~~~~ 556 (850)
+.++||++++..+.+.+.. .....++|.||+|+|||.+|+++|+.+.. ....++.++++..... ..+.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~----~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 96 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSR----RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAG-AKYR 96 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTS----SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHH-CCSH
T ss_pred chhhcchHHHHHHHHHHhC----CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcC-CCch
Confidence 4688999988888877643 23456789999999999999999998855 2456777776643111 1122
Q ss_pred -------hhHHHHhhhC-CCEEEeeccccccC---------HHHHHHHHhhhccCccCceEEEEecC
Q 003070 557 -------EMLMGTLKNY-EKLVVLVEDIDLAD---------PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 557 -------~~l~e~vr~~-P~sVvlldeiekA~---------~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
..+.+.+.+. ...||+|||++... .++++.|++.++.+. .+||+|+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~---~~ii~~~~ 160 (187)
T 2p65_A 97 GDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGE---LRCIGATT 160 (187)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTC---SCEEEEEC
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCC---eeEEEecC
Confidence 2233333333 45799999999986 788899999998864 56888887
No 59
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.70 E-value=4.9e-09 Score=123.49 Aligned_cols=127 Identities=8% Similarity=0.113 Sum_probs=88.1
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHhhh-------CCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecC-
Q 003070 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVECKS-------AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDM- 545 (850)
Q Consensus 474 ~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~-------gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idm- 545 (850)
.+..|.+.|...|+||+++..+|.-++..... -+.+..+||.||+|+|||.||++||..+-. .+...+.
T Consensus 285 ~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r---~~~~~~~~ 361 (595)
T 3f9v_A 285 IRDRIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPR---AVYTTGKG 361 (595)
T ss_dssp GGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSC---EECCCTTC
T ss_pred HHHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCC---ceecCCCc
Confidence 35678889999999999988877655542210 023458999999999999999999988731 1111111
Q ss_pred ------ccccCC--CCCc----hhhHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccC------------ceEE
Q 003070 546 ------RKRNDG--VSSH----SEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG------------KVIF 601 (850)
Q Consensus 546 ------s~~~~~--~~~~----~~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~------------n~Ii 601 (850)
...... ..+. .|.+..+ ...|+|||||+++++.+++.|+++||+|++. ++.|
T Consensus 362 ~~~~~l~~~~~~~~~~g~~~~~~G~l~~A----~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~v 437 (595)
T 3f9v_A 362 STAAGLTAAVVREKGTGEYYLEAGALVLA----DGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAV 437 (595)
T ss_dssp STTTTSEEECSSGGGTSSCSEEECHHHHH----SSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEE
T ss_pred cccccccceeeeccccccccccCCeeEec----CCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEE
Confidence 110000 0010 1233333 3469999999999999999999999999862 7889
Q ss_pred EEecCC
Q 003070 602 VLTKGD 607 (850)
Q Consensus 602 i~Tsn~ 607 (850)
|+|+|.
T Consensus 438 IaatNp 443 (595)
T 3f9v_A 438 IAAGNP 443 (595)
T ss_dssp EEEECC
T ss_pred EEEcCC
Confidence 999984
No 60
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.69 E-value=3.2e-07 Score=103.52 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=82.5
Q ss_pred cCCCchHHHHHHHHHHHHh--------hhC-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCc
Q 003070 485 NVPWQFDSIHSIVEVLVEC--------KSA-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSH 555 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~--------r~g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~ 555 (850)
.|.|.++++.+|-++|..- +.| ++---+||.||+|+|||.||++||..+ .-.|+.++.++... .|
T Consensus 183 DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l~s---k~ 256 (437)
T 4b4t_I 183 DIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELIQ---KY 256 (437)
T ss_dssp GTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGGCC---SS
T ss_pred ecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHhhh---cc
Confidence 4788888888888888753 224 333457799999999999999999887 57899999887532 23
Q ss_pred hh-------hHHHHhhhCCCEEEeecccccc-----------CH---HHHHHHHhhhccC-ccCceEEEEecCC
Q 003070 556 SE-------MLMGTLKNYEKLVVLVEDIDLA-----------DP---QFIKILADGFETE-NFGKVIFVLTKGD 607 (850)
Q Consensus 556 ~~-------~l~e~vr~~P~sVvlldeiekA-----------~~---~v~~~l~q~~d~G-~l~n~Iii~Tsn~ 607 (850)
+| .+-+..+++--+||||||||.. +. .+++.||+.||.- .-.+.|||+|||-
T Consensus 257 vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNr 330 (437)
T 4b4t_I 257 LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNK 330 (437)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESC
T ss_pred CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCC
Confidence 33 3444456666689999999953 22 3445556555532 2347889998874
No 61
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.68 E-value=1e-07 Score=102.90 Aligned_cols=97 Identities=10% Similarity=0.039 Sum_probs=65.6
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCC-----CCCchhhHHHHhhhCCCEEEeeccccccCH-
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG-----VSSHSEMLMGTLKNYEKLVVLVEDIDLADP- 581 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~-----~~~~~~~l~e~vr~~P~sVvlldeiekA~~- 581 (850)
....++|.||+|+|||.||+++|..+......++.+++..+... .....+.+.+.+++ ..|||||||+....
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~vL~iDEi~~l~~~ 113 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKS--VDLLLLDDVQFLSGK 113 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHT--CSEEEEECGGGGTTC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcC--CCEEEEcCcccccCC
Confidence 44679999999999999999999998766677888887654110 00112234444433 56999999998654
Q ss_pred -HHHHHHHhhhccCccCceEEEEecC
Q 003070 582 -QFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 582 -~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
..+..|+..++.-.-.+.+||+|++
T Consensus 114 ~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 114 ERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred hHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 6677777766543333456677664
No 62
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.67 E-value=3.3e-07 Score=103.90 Aligned_cols=117 Identities=15% Similarity=0.140 Sum_probs=80.2
Q ss_pred cCCCchHHHHHHHHHHHHh--------hhC-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCc
Q 003070 485 NVPWQFDSIHSIVEVLVEC--------KSA-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSH 555 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~--------r~g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~ 555 (850)
-|.|.++++..|-++|..- +.| ++---+||.||+|+|||.||++||..+ .-.|+.++.++... .|
T Consensus 182 digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~~---~~ 255 (434)
T 4b4t_M 182 DVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLVQ---MY 255 (434)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCS---SC
T ss_pred hcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhhh---cc
Confidence 4788888888888877652 224 334556789999999999999999987 57899999887532 23
Q ss_pred hh-------hHHHHhhhCCCEEEeecccccc-----------CHH---HHHHHHhhhccCc-cCceEEEEecCC
Q 003070 556 SE-------MLMGTLKNYEKLVVLVEDIDLA-----------DPQ---FIKILADGFETEN-FGKVIFVLTKGD 607 (850)
Q Consensus 556 ~~-------~l~e~vr~~P~sVvlldeiekA-----------~~~---v~~~l~q~~d~G~-l~n~Iii~Tsn~ 607 (850)
+| .+-+..+.+--+||||||||.. +.. +.+.|++.||.-. -.+.|||+|||-
T Consensus 256 vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNr 329 (434)
T 4b4t_M 256 IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNR 329 (434)
T ss_dssp SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSS
T ss_pred cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCC
Confidence 33 3344445555589999999842 223 3445666665321 236788888873
No 63
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.67 E-value=8.3e-08 Score=107.68 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=85.1
Q ss_pred cCCCchHHHHHHHHHHHHh--------hhC-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCc
Q 003070 485 NVPWQFDSIHSIVEVLVEC--------KSA-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSH 555 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~--------r~g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~ 555 (850)
-|.|.++++.+|-++|..- +.| ++---+||.||+|+|||.||++||..+ .-.|++++.++... .|
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~s---k~ 222 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELVQ---KY 222 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGSC---SS
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhhc---cc
Confidence 4788888888888888762 224 333457899999999999999999987 57899999887532 24
Q ss_pred hh-------hHHHHhhhCCCEEEeecccccc-----------CH---HHHHHHHhhhccC-ccCceEEEEecCC
Q 003070 556 SE-------MLMGTLKNYEKLVVLVEDIDLA-----------DP---QFIKILADGFETE-NFGKVIFVLTKGD 607 (850)
Q Consensus 556 ~~-------~l~e~vr~~P~sVvlldeiekA-----------~~---~v~~~l~q~~d~G-~l~n~Iii~Tsn~ 607 (850)
+| .+-+..+++.-+||||||||.- +. .+.+.||+.||.- .-.+.+||+|||-
T Consensus 223 vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNr 296 (405)
T 4b4t_J 223 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNR 296 (405)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESC
T ss_pred cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCC
Confidence 43 3445556776789999999963 22 3456677777642 2358899999994
No 64
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.63 E-value=3.6e-08 Score=107.64 Aligned_cols=120 Identities=16% Similarity=0.122 Sum_probs=79.9
Q ss_pred CCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCC-------CceEEecCccccC--------
Q 003070 486 VPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGST-------DLLFHIDMRKRND-------- 550 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~-------~~~i~idms~~~~-------- 550 (850)
+++.++=+..|...|..+-.+.....+++.||+|+|||.+++++++.+.... -.+++|++.....
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 4566777889999998887777778899999999999999999999885432 2468888654211
Q ss_pred -------C-CCC-chhhHHH---Hh--hhCCCEEEeeccccccCHHHHHHHHhhhccCc--cCceEEEEecCC
Q 003070 551 -------G-VSS-HSEMLMG---TL--KNYEKLVVLVEDIDLADPQFIKILADGFETEN--FGKVIFVLTKGD 607 (850)
Q Consensus 551 -------~-~~~-~~~~l~e---~v--r~~P~sVvlldeiekA~~~v~~~l~q~~d~G~--l~n~Iii~Tsn~ 607 (850)
. +.+ ....|.. .+ .++...||+|||||.-. -++.|+..++--. -.+.+||+++|.
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~ 172 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGH 172 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCS
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecC
Confidence 0 111 1122322 22 24556799999999864 3455555543211 235688888874
No 65
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.63 E-value=1.1e-07 Score=105.66 Aligned_cols=153 Identities=12% Similarity=0.064 Sum_probs=98.1
Q ss_pred CcHHHHHHHHHHHh------------cCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccc
Q 003070 70 VSKEDIKLVFEVFL------------RKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRF 137 (850)
Q Consensus 70 gRdeeirrVieIL~------------Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~ 137 (850)
|.++.++++.+.+. +...++.+|.|+||+|||.+++.++.+ .+..|+.++.+.+ .+
T Consensus 119 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~----------~~~~~~~v~~~~l--~~ 186 (389)
T 3vfd_A 119 GQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE----------SNATFFNISAASL--TS 186 (389)
T ss_dssp SCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH----------TTCEEEEECSCCC----
T ss_pred CHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh----------hcCcEEEeeHHHh--hc
Confidence 78888888888772 234678999999999999999999887 3568888887643 45
Q ss_pred cChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCC
Q 003070 138 MKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASST 217 (850)
Q Consensus 138 ~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG 217 (850)
...|+.+..++.+...+.. ..+.||||||++.|.+.... + .......++.++-+.+........+
T Consensus 187 ~~~g~~~~~~~~~~~~a~~----~~~~il~iDEid~l~~~~~~-~----------~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARE----LQPSIIFIDQVDSLLCERRE-G----------EHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp -----CHHHHHHHHHHHHH----SSSEEEEEETGGGGC-------------------CTHHHHHHHHHHHHHHHC-----
T ss_pred cccchHHHHHHHHHHHHHh----cCCeEEEEECchhhcccCCC-c----------cchHHHHHHHHHHHHhhcccccCCC
Confidence 5578888889998888876 35689999999999775421 1 0123444444444444422111245
Q ss_pred eEEEEecccHHHHHhhhhcCCcccccccceeeecCCCC
Q 003070 218 RVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 218 ~lwlIGatT~eeY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
++.+||||.... .-+|+|-+||+ ..+.++.+.
T Consensus 252 ~v~vI~atn~~~-----~l~~~l~~R~~-~~i~i~~p~ 283 (389)
T 3vfd_A 252 RVLVMGATNRPQ-----ELDEAVLRRFI-KRVYVSLPN 283 (389)
T ss_dssp CEEEEEEESCGG-----GCCHHHHTTCC-EEEECCCCC
T ss_pred CEEEEEecCCch-----hcCHHHHcCcc-eEEEcCCcC
Confidence 799999987532 55889999764 246666555
No 66
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.57 E-value=3.8e-08 Score=103.00 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=77.1
Q ss_pred CCCchHHHHHHHHHHHHhhh-------C-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCC----CC
Q 003070 486 VPWQFDSIHSIVEVLVECKS-------A-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG----VS 553 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~-------g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~----~~ 553 (850)
++||++++..+-+.+...+. | +....+||.||+|+|||.+|++||..+- ..++.++++.+... ..
T Consensus 13 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~---~~~~~v~~~~~~~~~~~~~~ 89 (268)
T 2r62_A 13 MAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH---VPFFSMGGSSFIEMFVGLGA 89 (268)
T ss_dssp SSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT---CCCCCCCSCTTTTSCSSSCS
T ss_pred hCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CCEEEechHHHHHhhcchHH
Confidence 66777777666665553221 2 2223378999999999999999999873 46788887764221 11
Q ss_pred CchhhHHHHhhhCCCEEEeeccccccCHH---------------HHHHHHhhhccCc--cCceEEEEecCCC
Q 003070 554 SHSEMLMGTLKNYEKLVVLVEDIDLADPQ---------------FIKILADGFETEN--FGKVIFVLTKGDS 608 (850)
Q Consensus 554 ~~~~~l~e~vr~~P~sVvlldeiekA~~~---------------v~~~l~q~~d~G~--l~n~Iii~Tsn~~ 608 (850)
..+..+.+..+.+..+||+|||||...+. +++.|++.++.-. -.+.+||.|+|..
T Consensus 90 ~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 161 (268)
T 2r62_A 90 SRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRP 161 (268)
T ss_dssp SSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCC
T ss_pred HHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCc
Confidence 12223334445555679999999986543 4556677666422 2358999999843
No 67
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.56 E-value=3.8e-07 Score=95.02 Aligned_cols=120 Identities=15% Similarity=0.158 Sum_probs=79.5
Q ss_pred cCCCchHHHHHHHHHHHHhhh-------C-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCC--
Q 003070 485 NVPWQFDSIHSIVEVLVECKS-------A-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSS-- 554 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~-------g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~-- 554 (850)
.|+|++++...+.+.+...+. | +...-++|.||+|+|||.+|++||..+ ...++.++++.....-.+
T Consensus 13 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~~~~~~~~~~~ 89 (257)
T 1lv7_A 13 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEMFVGVG 89 (257)
T ss_dssp GSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSSTTSCCCCC
T ss_pred HhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHHHHHHHhhhhh
Confidence 467888777777766654332 1 223348899999999999999999987 346899988765322111
Q ss_pred --chhhHHHHhhhCCCEEEeeccccccC--------------HHHHHHHHhhhccCc-cCceEEEEecCC
Q 003070 555 --HSEMLMGTLKNYEKLVVLVEDIDLAD--------------PQFIKILADGFETEN-FGKVIFVLTKGD 607 (850)
Q Consensus 555 --~~~~l~e~vr~~P~sVvlldeiekA~--------------~~v~~~l~q~~d~G~-l~n~Iii~Tsn~ 607 (850)
.+..+-+..+....+|++|||||... ..+.+.+++.++.-. -.+.+||.|+|.
T Consensus 90 ~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~ 159 (257)
T 1lv7_A 90 ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNR 159 (257)
T ss_dssp HHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESC
T ss_pred HHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCC
Confidence 12234444455666899999997532 245666777666422 236889998884
No 68
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.56 E-value=2.1e-07 Score=100.83 Aligned_cols=112 Identities=17% Similarity=0.223 Sum_probs=83.7
Q ss_pred CchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHh--cC-CCCceEEecCccccCCCCC--chhhHHHH
Q 003070 488 WQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESV--FG-STDLLFHIDMRKRNDGVSS--HSEMLMGT 562 (850)
Q Consensus 488 gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~l--fg-s~~~~i~idms~~~~~~~~--~~~~l~e~ 562 (850)
||++++..+..+|... + .-.+||.||.|+|||++|++||+.+ +. +...++.++.+.. ..+ -+..+.+.
T Consensus 1 g~~~~~~~L~~~i~~~---~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~---~~~id~ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS---E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE---NIGIDDIRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC---S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS---CBCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCC---C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC---CCCHHHHHHHHHH
Confidence 7999999999988653 3 4588899999999999999999863 22 2446677765421 111 12356677
Q ss_pred hhhCC----CEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 563 LKNYE----KLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 563 vr~~P----~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
+...| |.||++||+|.-....+|.|++.||+.- .+++|||+++.
T Consensus 74 ~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~-~~t~fIl~t~~ 121 (305)
T 2gno_A 74 LNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPP-EYAVIVLNTRR 121 (305)
T ss_dssp HTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCC-TTEEEEEEESC
T ss_pred HhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCC-CCeEEEEEECC
Confidence 77777 5899999999999999999999999854 48999998874
No 69
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.56 E-value=3.3e-07 Score=103.76 Aligned_cols=117 Identities=13% Similarity=0.126 Sum_probs=84.9
Q ss_pred cCCCchHHHHHHHHHHHHhh--------hC-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCc
Q 003070 485 NVPWQFDSIHSIVEVLVECK--------SA-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSH 555 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r--------~g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~ 555 (850)
-|.|.+++...|-++|..-- .| ++---+||.||+|+|||.||++||..+ .-.|+++++++... .|
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~~---~~ 246 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFVH---KY 246 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTCC---SS
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhhc---cc
Confidence 57888888888888887532 24 333457899999999999999999988 57899999887532 23
Q ss_pred hh-------hHHHHhhhCCCEEEeecccccc-----------C---HHHHHHHHhhhcc-CccCceEEEEecCC
Q 003070 556 SE-------MLMGTLKNYEKLVVLVEDIDLA-----------D---PQFIKILADGFET-ENFGKVIFVLTKGD 607 (850)
Q Consensus 556 ~~-------~l~e~vr~~P~sVvlldeiekA-----------~---~~v~~~l~q~~d~-G~l~n~Iii~Tsn~ 607 (850)
+| .+-+..+++--+||||||||.. + ..+.+.||+.||. ..-.+.+||+|||-
T Consensus 247 ~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~ 320 (428)
T 4b4t_K 247 LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNR 320 (428)
T ss_dssp CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESC
T ss_pred cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCC
Confidence 33 3444456666689999999841 2 2456667777764 12358999999984
No 70
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.56 E-value=3.9e-07 Score=103.38 Aligned_cols=117 Identities=17% Similarity=0.214 Sum_probs=84.5
Q ss_pred cCCCchHHHHHHHHHHHHh--------hhC-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCc
Q 003070 485 NVPWQFDSIHSIVEVLVEC--------KSA-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSH 555 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~--------r~g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~ 555 (850)
-|.|.++++..|-++|..- +.| ++---+||.||+|+|||.||++||..+ .-.|+.++.++... .|
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~s---k~ 255 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIVD---KY 255 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTCC---SS
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhcc---cc
Confidence 3688888888888888763 224 444557789999999999999999987 47899999887532 23
Q ss_pred hh-------hHHHHhhhCCCEEEeecccccc-----------CH---HHHHHHHhhhccC-ccCceEEEEecCC
Q 003070 556 SE-------MLMGTLKNYEKLVVLVEDIDLA-----------DP---QFIKILADGFETE-NFGKVIFVLTKGD 607 (850)
Q Consensus 556 ~~-------~l~e~vr~~P~sVvlldeiekA-----------~~---~v~~~l~q~~d~G-~l~n~Iii~Tsn~ 607 (850)
+| .+-...+.+.-+||||||||.- +. .+.+.||..||.- ...+.|||+|||-
T Consensus 256 ~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNr 329 (437)
T 4b4t_L 256 IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNR 329 (437)
T ss_dssp SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESS
T ss_pred chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCC
Confidence 33 3444456666789999999952 22 3455677777642 2358899999994
No 71
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.55 E-value=3.4e-07 Score=103.94 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=63.6
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCC--CCceEEecCccccCC-----CCCchhhHHHHhhhCCCEEEeeccccccCH
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGS--TDLLFHIDMRKRNDG-----VSSHSEMLMGTLKNYEKLVVLVEDIDLADP 581 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs--~~~~i~idms~~~~~-----~~~~~~~l~e~vr~~P~sVvlldeiekA~~ 581 (850)
...++|.||+|+|||.||+++|..+... ...++.+++..+... ..+..+.+.+..+. ...|||||||+....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~IDEi~~l~~ 208 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRK-KVDILLIDDVQFLIG 208 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTT-TCSEEEEECGGGGSS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcC-CCCEEEEeCcccccC
Confidence 5689999999999999999999988543 456777776653110 00111223333331 346999999997654
Q ss_pred --HHHHHHHhhhccCccCceEEEEecC
Q 003070 582 --QFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 582 --~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
..+..|++.|+.-.=.+..||+||+
T Consensus 209 ~~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 209 KTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp CHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred ChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 6777787777543333456677764
No 72
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.55 E-value=1.6e-07 Score=108.26 Aligned_cols=121 Identities=13% Similarity=0.190 Sum_probs=89.1
Q ss_pred ccCCCchHHHHHHHHHHHHhh--------hC-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCC
Q 003070 484 ENVPWQFDSIHSIVEVLVECK--------SA-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSS 554 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r--------~g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~ 554 (850)
..|+|+++++..|-+.|.... .| .+...+||.||+|+|||.+|++||..+ ...|+.++++.....-.|
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l~~~~~g 280 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAG 280 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHHHTSCTT
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHhhhhhcc
Confidence 358999999999999887641 12 455679999999999999999999987 578999998764321111
Q ss_pred c-----hhhHHHHhhhCCCEEEeecccccc-----------CHHHHHHHHhhhccCcc-CceEEEEecCCC
Q 003070 555 H-----SEMLMGTLKNYEKLVVLVEDIDLA-----------DPQFIKILADGFETENF-GKVIFVLTKGDS 608 (850)
Q Consensus 555 ~-----~~~l~e~vr~~P~sVvlldeiekA-----------~~~v~~~l~q~~d~G~l-~n~Iii~Tsn~~ 608 (850)
. .+.+..+ +++..+||||||||.. ...+++.|++.|+.-.- .+.+||.|+|..
T Consensus 281 ~~~~~~~~~f~~A-~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 281 ESESNLRKAFEEA-EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp HHHHHHHHHHHHH-HHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred hhHHHHHHHHHHH-HhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 1 1245555 4444589999999543 34789999999996443 388999999943
No 73
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.52 E-value=5.4e-07 Score=99.25 Aligned_cols=153 Identities=9% Similarity=0.056 Sum_probs=103.6
Q ss_pred CcHHHHHHHHHHHh------------cCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccc
Q 003070 70 VSKEDIKLVFEVFL------------RKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRF 137 (850)
Q Consensus 70 gRdeeirrVieIL~------------Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~ 137 (850)
|.++.++.+.+.+. .+..++.+|.|+||+|||.+++.++... +..++.++.+.+ ..
T Consensus 88 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~----------~~~~~~i~~~~l--~~ 155 (357)
T 3d8b_A 88 GVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS----------GATFFSISASSL--TS 155 (357)
T ss_dssp SCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT----------TCEEEEEEGGGG--CC
T ss_pred ChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc----------CCeEEEEehHHh--hc
Confidence 78888888887764 3456789999999999999999998864 567888887644 34
Q ss_pred cChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCC
Q 003070 138 MKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASST 217 (850)
Q Consensus 138 ~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG 217 (850)
...|+.+..++.+...... ..+.||||||++.|.+...... ......++.++-..|........+
T Consensus 156 ~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~-----------~~~~~~~~~~lL~~l~~~~~~~~~ 220 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARC----QQPAVIFIDEIDSLLSQRGDGE-----------HESSRRIKTEFLVQLDGATTSSED 220 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHH----TCSEEEEEETHHHHTBC-----------------CHHHHHHHHHHHHHHC----CCC
T ss_pred cccchHHHHHHHHHHHHHh----cCCeEEEEeCchhhhccCCCCc-----------chHHHHHHHHHHHHHhcccccCCC
Confidence 4578889999998887775 4578999999999987542100 123334444444444321101246
Q ss_pred eEEEEecccHHHHHhhhhcCCcccccccceeeecCCCC
Q 003070 218 RVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 218 ~lwlIGatT~eeY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
++.+||||.... .-+|+|-+|++ ..+.++-|.
T Consensus 221 ~v~vI~atn~~~-----~l~~~l~~Rf~-~~i~i~~p~ 252 (357)
T 3d8b_A 221 RILVVGATNRPQ-----EIDEAARRRLV-KRLYIPLPE 252 (357)
T ss_dssp CEEEEEEESCGG-----GBCHHHHTTCC-EEEECCCCC
T ss_pred CEEEEEecCChh-----hCCHHHHhhCc-eEEEeCCcC
Confidence 799999986532 45788988764 345565554
No 74
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.52 E-value=9.3e-07 Score=93.09 Aligned_cols=154 Identities=8% Similarity=0.080 Sum_probs=103.6
Q ss_pred CCcHHHHHHHHHHHhc-------------CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccc
Q 003070 69 SVSKEDIKLVFEVFLR-------------KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTL 135 (850)
Q Consensus 69 ~gRdeeirrVieIL~R-------------r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~ 135 (850)
.|.++.++++.+.+.. +..++.+|.|+||+|||.+++.++... +..++.+..+.+
T Consensus 20 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~----------~~~~~~v~~~~~-- 87 (285)
T 3h4m_A 20 GGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET----------NATFIRVVGSEL-- 87 (285)
T ss_dssp CSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT----------TCEEEEEEGGGG--
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEehHHH--
Confidence 3788888888777654 456788999999999999999998874 457787776533
Q ss_pred cccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhccccc-CC
Q 003070 136 RFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCN-SA 214 (850)
Q Consensus 136 ~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l-~~ 214 (850)
.+...++.+.++..+...+.. ..+.||||||++.+........ . .........+..+|...- -.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~-----~------~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAKE----KAPSIIFIDEIDAIAAKRTDAL-----T------GGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHHH----TCSEEEEEETTHHHHBCCSSSC-----C------GGGGHHHHHHHHHHHHHHTTC
T ss_pred HHhccchHHHHHHHHHHHHHH----cCCeEEEEECHHHhcccCcccc-----C------CccHHHHHHHHHHHHHhhCCC
Confidence 344578889999999888876 4578999999999987543210 0 011111222334443210 01
Q ss_pred CCCeEEEEecccHHHHHhhhhcCCcccc--cccceeeecCCCC
Q 003070 215 SSTRVWLMATASYQTYMKCQMRQPPLEI--QWALQAVSIPSGG 255 (850)
Q Consensus 215 arG~lwlIGatT~eeY~K~iekdPaLEr--~W~LQ~V~Vps~~ 255 (850)
.++.+.+||||... -.-+|++-+ ||+. .+.++.|+
T Consensus 153 ~~~~~~vI~ttn~~-----~~l~~~l~~~~Rf~~-~i~~~~p~ 189 (285)
T 3h4m_A 153 ARGDVKIIGATNRP-----DILDPAILRPGRFDR-IIEVPAPD 189 (285)
T ss_dssp SSSSEEEEEECSCG-----GGBCHHHHSTTSEEE-EEECCCCC
T ss_pred CCCCEEEEEeCCCc-----hhcCHHHcCCCcCCe-EEEECCCC
Confidence 34679999998653 235788877 6643 56676665
No 75
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.51 E-value=9.1e-07 Score=94.13 Aligned_cols=156 Identities=7% Similarity=0.075 Sum_probs=104.7
Q ss_pred CcHHHHHHHHHHHh---------------cCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeeccccc
Q 003070 70 VSKEDIKLVFEVFL---------------RKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVT 134 (850)
Q Consensus 70 gRdeeirrVieIL~---------------Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~ 134 (850)
|.++..+.+.+.+. .+...|.+|.|+||+|||.+++.+++.+.... .+.+..++.++.+.+
T Consensus 35 G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~---~~~~~~~~~~~~~~l- 110 (309)
T 3syl_A 35 GLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLG---YVRKGHLVSVTRDDL- 110 (309)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTT---SSSSCCEEEECGGGT-
T ss_pred ChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcC---CcCCCcEEEEcHHHh-
Confidence 66666666665543 33455789999999999999999999987642 234556888876543
Q ss_pred ccccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCC
Q 003070 135 LRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSA 214 (850)
Q Consensus 135 ~~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~ 214 (850)
.+..-|+.+.++.++..... +-||||||++.|....... +.-..++..+-++|..
T Consensus 111 -~~~~~g~~~~~~~~~~~~~~-------~~vl~iDEid~l~~~~~~~-------------~~~~~~~~~Ll~~l~~---- 165 (309)
T 3syl_A 111 -VGQYIGHTAPKTKEVLKRAM-------GGVLFIDEAYYLYRPDNER-------------DYGQEAIEILLQVMEN---- 165 (309)
T ss_dssp -CCSSTTCHHHHHHHHHHHHT-------TSEEEEETGGGSCCCC----------------CCTHHHHHHHHHHHHH----
T ss_pred -hhhcccccHHHHHHHHHhcC-------CCEEEEEChhhhccCCCcc-------------cccHHHHHHHHHHHhc----
Confidence 23334555666666655432 3599999999998643210 0112233344455543
Q ss_pred CCCeEEEEecccHHHHHhhhhcCCcccccccceeeecCCCC
Q 003070 215 SSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 215 arG~lwlIGatT~eeY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
.++.+.+|++++...+..+...+|+|-+|++ +.+.+|.++
T Consensus 166 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~ 205 (309)
T 3syl_A 166 NRDDLVVILAGYADRMENFFQSNPGFRSRIA-HHIEFPDYS 205 (309)
T ss_dssp CTTTCEEEEEECHHHHHHHHHHSTTHHHHEE-EEEEECCCC
T ss_pred CCCCEEEEEeCChHHHHHHHhhCHHHHHhCC-eEEEcCCcC
Confidence 3467999999988888888788899999864 778887766
No 76
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.50 E-value=1.6e-07 Score=106.93 Aligned_cols=95 Identities=22% Similarity=0.169 Sum_probs=71.7
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCC-CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHH
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAK-KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGT 562 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk-~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~ 562 (850)
+.|+||+++...+...+...+.|+ +..-+||.||+|+|||.+|++||..+ |..-.|+.+++++......+-.+.+.+.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL-GSKVPFCPMVGSEVYSTEIKKTEVLMEN 115 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH-CTTSCEEEEEGGGGCCSSSCHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh-CCCceEEEEeHHHHHHHhhhhhHHHHHH
Confidence 457899999999888888888874 44568999999999999999999997 4457899999887532222222344444
Q ss_pred h------hhCCCEEEeecccccc
Q 003070 563 L------KNYEKLVVLVEDIDLA 579 (850)
Q Consensus 563 v------r~~P~sVvlldeiekA 579 (850)
+ +.+..+||||||||..
T Consensus 116 f~~a~~~~~~~~~il~iDEid~l 138 (456)
T 2c9o_A 116 FRRAIGLRIKETKEVYEGEVTEL 138 (456)
T ss_dssp HHHTEEEEEEEEEEEEEEEEEEE
T ss_pred HHHHHhhhhcCCcEEEEechhhc
Confidence 4 3445689999999965
No 77
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.50 E-value=6.7e-07 Score=101.78 Aligned_cols=116 Identities=16% Similarity=0.150 Sum_probs=82.4
Q ss_pred CCCchHHHHHHHHHHHHh--------hhC-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCch
Q 003070 486 VPWQFDSIHSIVEVLVEC--------KSA-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS 556 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~--------r~g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~ 556 (850)
|.|.++++..|-++|..- +.| ++---+||.||+|+|||.||++||..+ .-.|+.++.++... .|+
T Consensus 211 IgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L~s---k~v 284 (467)
T 4b4t_H 211 VGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSELVQ---KYV 284 (467)
T ss_dssp CTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCC---CSS
T ss_pred hccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHhhc---ccC
Confidence 778888888887777642 224 445567799999999999999999987 47899999887632 233
Q ss_pred h-------hHHHHhhhCCCEEEeecccccc-----------C---HHHHHHHHhhhccCc-cCceEEEEecCC
Q 003070 557 E-------MLMGTLKNYEKLVVLVEDIDLA-----------D---PQFIKILADGFETEN-FGKVIFVLTKGD 607 (850)
Q Consensus 557 ~-------~l~e~vr~~P~sVvlldeiekA-----------~---~~v~~~l~q~~d~G~-l~n~Iii~Tsn~ 607 (850)
| .+-...+.+--+||||||||.. + ..+++.|++.||.-. -.+.|||+|||-
T Consensus 285 Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNr 357 (467)
T 4b4t_H 285 GEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNR 357 (467)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSC
T ss_pred CHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCC
Confidence 3 3334445565689999999953 1 234556667776432 348899999994
No 78
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.49 E-value=6.8e-07 Score=102.59 Aligned_cols=120 Identities=19% Similarity=0.226 Sum_probs=82.6
Q ss_pred cCCCchHHHHHHHHHHHHhhh-------C-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCch
Q 003070 485 NVPWQFDSIHSIVEVLVECKS-------A-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS 556 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~-------g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~ 556 (850)
.|.||++++..+-+.+...+. | +...-+||.||+|+|||.||++||... ...|+.++++++.+.-.|..
T Consensus 17 di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~~~~~g~~ 93 (476)
T 2ce7_A 17 DVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFVELFVGVG 93 (476)
T ss_dssp GCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTTTCCTTHH
T ss_pred HhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHHHHHhccc
Confidence 478888888888777765442 2 222338899999999999999999877 46788998887633211211
Q ss_pred -----hhHHHHhhhCCCEEEeeccccccC--------------HHHHHHHHhhhcc-CccCceEEEEecCCC
Q 003070 557 -----EMLMGTLKNYEKLVVLVEDIDLAD--------------PQFIKILADGFET-ENFGKVIFVLTKGDS 608 (850)
Q Consensus 557 -----~~l~e~vr~~P~sVvlldeiekA~--------------~~v~~~l~q~~d~-G~l~n~Iii~Tsn~~ 608 (850)
+.+..+ +.+..+||||||||... ..+++.|+..||. +.-.+.|||.|+|..
T Consensus 94 ~~~~r~lf~~A-~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 94 AARVRDLFAQA-KAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHH-HHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred HHHHHHHHHHH-HhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 134444 45555899999998742 2467778887773 112478999999943
No 79
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.46 E-value=1.3e-06 Score=94.53 Aligned_cols=152 Identities=10% Similarity=0.063 Sum_probs=104.1
Q ss_pred CcHHHHHHHHHHHh------------cCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccc
Q 003070 70 VSKEDIKLVFEVFL------------RKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRF 137 (850)
Q Consensus 70 gRdeeirrVieIL~------------Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~ 137 (850)
|.++-.+.+.+.+. ++..++.+|.|+||+|||.+++.++... +..++.++.+.+ .+
T Consensus 22 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~----------~~~~~~v~~~~l--~~ 89 (322)
T 3eie_A 22 GLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSSSDL--VS 89 (322)
T ss_dssp SCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH----------TCEEEEEEHHHH--HT
T ss_pred ChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH----------CCCEEEEchHHH--hh
Confidence 66666666666551 2234678999999999999999998874 567888876643 34
Q ss_pred cChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCC
Q 003070 138 MKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASST 217 (850)
Q Consensus 138 ~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG 217 (850)
...|+.+.+++.+...++. ..+.||||||++.|.+.... + ...+.+.++.++-+.+.... ...+
T Consensus 90 ~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~~~~-~----------~~~~~~~~~~~ll~~l~~~~-~~~~ 153 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARE----NKPSIIFIDQVDALTGTRGE-G----------ESEASRRIKTELLVQMNGVG-NDSQ 153 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHH----TSSEEEEEECGGGGSCC-----------------CCTHHHHHHHHHHHGGGG-TSCC
T ss_pred cccchHHHHHHHHHHHHHh----cCCeEEEechhhhhhccCCC-C----------cchHHHHHHHHHHHHhcccc-ccCC
Confidence 5678999999999988876 45789999999999875421 0 02244555555555554321 1346
Q ss_pred eEEEEecccHHHHHhhhhcCCcccccccceeeecCCCC
Q 003070 218 RVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 218 ~lwlIGatT~eeY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
.+.+||||..- -.-+|+|-+||+ ..+.+|-|+
T Consensus 154 ~v~vi~atn~~-----~~ld~al~~Rf~-~~i~~~~p~ 185 (322)
T 3eie_A 154 GVLVLGATNIP-----WQLDSAIRRRFE-RRIYIPLPD 185 (322)
T ss_dssp CEEEEEEESCG-----GGSCHHHHHHCC-EEEECCCCC
T ss_pred ceEEEEecCCh-----hhCCHHHHcccC-eEEEeCCCC
Confidence 79999998642 235899999875 345666555
No 80
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.41 E-value=1.9e-06 Score=93.69 Aligned_cols=136 Identities=9% Similarity=0.090 Sum_probs=94.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeEE
Q 003070 87 RRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAII 166 (850)
Q Consensus 87 K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvIL 166 (850)
.++.+|.|+||+|||.+++.+|... .+..++.++.+.+ .....|+.+..++++....+. ..+.||
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~---------~~~~~~~i~~~~l--~~~~~g~~~~~~~~lf~~a~~----~~~~vl 109 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA---------NNSTFFSISSSDL--VSKWLGESEKLVKNLFQLARE----NKPSII 109 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT---------TSCEEEEEECCSS--CCSSCCSCHHHHHHHHHHHHH----TSSEEE
T ss_pred CceEEEECCCCccHHHHHHHHHHHc---------CCCcEEEEEhHHH--HhhhhhHHHHHHHHHHHHHHh----cCCcEE
Confidence 3678999999999999999999865 4567888887643 344567888899999888875 457899
Q ss_pred EecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccccccc
Q 003070 167 YTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWAL 246 (850)
Q Consensus 167 fIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr~W~L 246 (850)
||||++.+.+..... .....+.++.++-..+.... ...+.+.+||||..- -.-||+|-|||+
T Consensus 110 ~iDEid~l~~~~~~~-----------~~~~~~~~~~~ll~~ld~~~-~~~~~v~vI~atn~~-----~~ld~al~rRf~- 171 (322)
T 1xwi_A 110 FIDEIDSLCGSRSEN-----------ESEAARRIKTEFLVQMQGVG-VDNDGILVLGATNIP-----WVLDSAIRRRFE- 171 (322)
T ss_dssp EEETTTGGGCCSSSC-----------CTTHHHHHHHHHHHHHHCSS-SCCTTEEEEEEESCT-----TTSCHHHHHTCC-
T ss_pred EeecHHHhccccccc-----------cchHHHHHHHHHHHHHhccc-ccCCCEEEEEecCCc-----ccCCHHHHhhcC-
Confidence 999999998754321 01244445544444443221 124679999998644 246899999764
Q ss_pred eeeecCCCC
Q 003070 247 QAVSIPSGG 255 (850)
Q Consensus 247 Q~V~Vps~~ 255 (850)
..+.+|-|.
T Consensus 172 ~~i~i~~P~ 180 (322)
T 1xwi_A 172 KRIYIPLPE 180 (322)
T ss_dssp EEEECCCCC
T ss_pred eEEEeCCcC
Confidence 446666555
No 81
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.40 E-value=1.3e-06 Score=107.03 Aligned_cols=115 Identities=10% Similarity=0.214 Sum_probs=69.4
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcC-------CCCceEEecCccccCCCCCch
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFG-------STDLLFHIDMRKRNDGVSSHS 556 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfg-------s~~~~i~idms~~~~~~~~~~ 556 (850)
..|+||++.+..+.+.+.+ +....++|.||+|+|||.+|++||..+.. ....++.+|++....+ ..|.
T Consensus 170 d~viGr~~~i~~l~~~l~~----~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g-~~~~ 244 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLR----RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAG-AKYR 244 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHC----SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------
T ss_pred cccCCcHHHHHHHHHHHhc----CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhcc-Cccc
Confidence 3589999999988887743 22235689999999999999999998743 2457889998765221 1232
Q ss_pred h-------hHHHHhhhC-CCEEEeeccccccC--------HHHHHHHHhhhccCccCceEEEEecC
Q 003070 557 E-------MLMGTLKNY-EKLVVLVEDIDLAD--------PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 557 ~-------~l~e~vr~~-P~sVvlldeiekA~--------~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+ .+.+.++.. ...|||||||+... .++.+.|+++++.|.+. +|.++|
T Consensus 245 g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~---~I~at~ 307 (854)
T 1qvr_A 245 GEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELR---LIGATT 307 (854)
T ss_dssp -CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCC---EEEEEC
T ss_pred hHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeE---EEEecC
Confidence 2 233344443 46799999999876 77889999999988653 566554
No 82
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.39 E-value=1.9e-06 Score=103.72 Aligned_cols=115 Identities=12% Similarity=0.220 Sum_probs=81.6
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCC-------CCceEEecCccccCCCCCch
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGS-------TDLLFHIDMRKRNDGVSSHS 556 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs-------~~~~i~idms~~~~~~~~~~ 556 (850)
..|+||++.+..+.+.+.+ +....+||.||+|+|||.+|++||..+... ...++.+|++....+ ..|.
T Consensus 186 d~~iGr~~~i~~l~~~l~~----~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~-~~~~ 260 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCR----RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAG-TKYR 260 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTS----SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CC-CCCS
T ss_pred CCccCCHHHHHHHHHHHhc----cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhcc-cccc
Confidence 4689999999988887653 234567999999999999999999887321 345677787764211 1233
Q ss_pred h-------hHHHHhhhCCCEEEeecccccc---------CHHHHHHHHhhhccCccCceEEEEecC
Q 003070 557 E-------MLMGTLKNYEKLVVLVEDIDLA---------DPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 557 ~-------~l~e~vr~~P~sVvlldeiekA---------~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+ .+.+.+++....||+||||+.. ..++.+.|++++++|.+ ++|.++|
T Consensus 261 g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~---~~I~at~ 323 (758)
T 1r6b_X 261 GDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKI---RVIGSTT 323 (758)
T ss_dssp SCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCC---EEEEEEC
T ss_pred chHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCe---EEEEEeC
Confidence 2 3444556666789999999976 67888999999998754 5666664
No 83
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.39 E-value=5.4e-07 Score=103.05 Aligned_cols=113 Identities=15% Similarity=0.247 Sum_probs=73.4
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcC-------CCCceEEecCcc-ccCCCCCch
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFG-------STDLLFHIDMRK-RNDGVSSHS 556 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfg-------s~~~~i~idms~-~~~~~~~~~ 556 (850)
.|+||++.+..+...+.+ +....+||.||+|+|||.+|++||..+.. ....++.+|++. |...-...+
T Consensus 181 ~iiGr~~~i~~l~~~l~r----~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~ 256 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSR----RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRL 256 (468)
T ss_dssp CCCCCHHHHHHHHHHHHC----SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTH
T ss_pred CccCcHHHHHHHHHHHhc----cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHH
Confidence 589999999998888764 23457799999999999999999999854 245688899872 110001123
Q ss_pred hhHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCCC
Q 003070 557 EMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGDS 608 (850)
Q Consensus 557 ~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~~ 608 (850)
..+.+.+++....|||+| ...+.++.|+.+++.|. .+||.++|..
T Consensus 257 ~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g~---v~vI~at~~~ 301 (468)
T 3pxg_A 257 KKVMDEIRQAGNIILFID----AAIDASNILKPSLARGE---LQCIGATTLD 301 (468)
T ss_dssp HHHHHHHHTCCCCEEEEC----C--------CCCTTSSS---CEEEEECCTT
T ss_pred HHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCCC---EEEEecCCHH
Confidence 345566676777799999 67789999999999984 5678878743
No 84
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.35 E-value=2.4e-06 Score=90.61 Aligned_cols=153 Identities=9% Similarity=0.041 Sum_probs=98.4
Q ss_pred CcHHHHHHHHHHHhc------------CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccc
Q 003070 70 VSKEDIKLVFEVFLR------------KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRF 137 (850)
Q Consensus 70 gRdeeirrVieIL~R------------r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~ 137 (850)
|.++.++.+.+.+.. ...++.+|.|+||+|||.+++.++... +..++.++.+.+ .+
T Consensus 25 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~----------~~~~~~i~~~~l--~~ 92 (297)
T 3b9p_A 25 GQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC----------SATFLNISAASL--TS 92 (297)
T ss_dssp CCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT----------TCEEEEEESTTT--SS
T ss_pred ChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh----------CCCeEEeeHHHH--hh
Confidence 677777777666532 245688999999999999999998864 456788776643 34
Q ss_pred cChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccC-CCC
Q 003070 138 MKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNS-ASS 216 (850)
Q Consensus 138 ~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~-~ar 216 (850)
...++.+.+++.+...... ..+.||||||++.+.+...... .+....++.++-+.+..... ...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~-----------~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARH----MQPSIIFIDEVDSLLSERSSSE-----------HEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHH----TCSEEEEEETGGGTSBCC----------------CCSHHHHHHHHHHHHHCC-----
T ss_pred cccchHHHHHHHHHHHHHH----cCCcEEEeccHHHhccccccCc-----------chHHHHHHHHHHHHHhcccccCCC
Confidence 4567788888888887775 4578999999999987653210 12223333333333332110 012
Q ss_pred CeEEEEecccHHHHHhhhhcCCcccccccceeeecCCCC
Q 003070 217 TRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 217 G~lwlIGatT~eeY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
+.+.+||||.... .-+|++-+||+ +.+.++-|.
T Consensus 158 ~~v~vi~~tn~~~-----~l~~~l~~R~~-~~i~~~~p~ 190 (297)
T 3b9p_A 158 DRIVVLAATNRPQ-----ELDEAALRRFT-KRVYVSLPD 190 (297)
T ss_dssp -CEEEEEEESCGG-----GBCHHHHHHCC-EEEECCCCC
T ss_pred CcEEEEeecCChh-----hCCHHHHhhCC-eEEEeCCcC
Confidence 5699999987543 45788888775 456666544
No 85
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.34 E-value=3.3e-07 Score=91.77 Aligned_cols=96 Identities=13% Similarity=0.100 Sum_probs=60.6
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC-----CCCCchhhHHHHhhhCCCEEEeeccccc--cCHH
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND-----GVSSHSEMLMGTLKNYEKLVVLVEDIDL--ADPQ 582 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~-----~~~~~~~~l~e~vr~~P~sVvlldeiek--A~~~ 582 (850)
..++|.||+|+|||.||++|+..+......++.+++.+... -..+-...+.+.+++. .||+||||+. .++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lilDei~~~~~~~~ 132 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKKV--PVLMLDDLGAEAMSSW 132 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHHS--SEEEEEEECCC---CC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcCC--CEEEEcCCCCCcCCHH
Confidence 67899999999999999999999876666777777654210 0011123344555543 4999999954 4433
Q ss_pred HHH-HHHhhhccCccCceEEEEecCC
Q 003070 583 FIK-ILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 583 v~~-~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.+. +|.++++...-.+..+|+|||.
T Consensus 133 ~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 133 VRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp GGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 344 2333454432345678888984
No 86
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.32 E-value=3.7e-06 Score=94.34 Aligned_cols=138 Identities=11% Similarity=0.104 Sum_probs=100.2
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeE
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAI 165 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvI 165 (850)
-.+..+|.|+||+|||-+++.+|... ++.|+.++.+.+ -.+.-||-|.+++++....++ ..+.|
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~----------~~~f~~v~~s~l--~sk~vGese~~vr~lF~~Ar~----~aP~I 244 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT----------DCKFIRVSGAEL--VQKYIGEGSRMVRELFVMARE----HAPSI 244 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH----------TCEEEEEEGGGG--SCSSTTHHHHHHHHHHHHHHH----TCSEE
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh----------CCCceEEEhHHh--hccccchHHHHHHHHHHHHHH----hCCce
Confidence 46789999999999999999998863 568999988754 466789999999999999987 46899
Q ss_pred EEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccc--c
Q 003070 166 IYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEI--Q 243 (850)
Q Consensus 166 LfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr--~ 243 (850)
|||||+..+.+.....+ ++ ....++.+++++=+-|.... .++.+-+||||..- -.-||||-| |
T Consensus 245 IFiDEiDai~~~R~~~~-----~~---~~~~~~~~l~~lL~~lDg~~--~~~~V~vIaATNrp-----d~LDpAllRpGR 309 (405)
T 4b4t_J 245 IFMDEIDSIGSTRVEGS-----GG---GDSEVQRTMLELLNQLDGFE--TSKNIKIIMATNRL-----DILDPALLRPGR 309 (405)
T ss_dssp EEEESSSCCTTSCSCSS-----SG---GGGHHHHHHHHHHHHHHTTT--CCCCEEEEEEESCS-----SSSCHHHHSTTS
T ss_pred EeeecchhhccCCCCCC-----CC---CcHHHHHHHHHHHHhhhccC--CCCCeEEEeccCCh-----hhCCHhHcCCCc
Confidence 99999999987653211 01 01234445555544444332 45679999998742 356999998 7
Q ss_pred ccceeeecCCCC
Q 003070 244 WALQAVSIPSGG 255 (850)
Q Consensus 244 W~LQ~V~Vps~~ 255 (850)
|| ..|.||-|.
T Consensus 310 fD-~~I~i~lPd 320 (405)
T 4b4t_J 310 ID-RKIEFPPPS 320 (405)
T ss_dssp SC-CEEECCCCC
T ss_pred Cc-eEEEcCCcC
Confidence 76 456676665
No 87
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.31 E-value=3.4e-07 Score=99.32 Aligned_cols=124 Identities=17% Similarity=0.246 Sum_probs=86.2
Q ss_pred ccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCC---CCceEEecCccccC----------
Q 003070 484 ENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGS---TDLLFHIDMRKRND---------- 550 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs---~~~~i~idms~~~~---------- 550 (850)
+.++|+++.+..+.+.+..+..+.....+++.||.|+|||.||++++..+-.. ...++.+++.....
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 45788888888888887766556666788999999999999999999887433 45678887553210
Q ss_pred ----C--CCC-----chhhHHHHhhhCC-CEEEeeccccccC----HHHHHHHHhhhccCccCceEEEEecCC
Q 003070 551 ----G--VSS-----HSEMLMGTLKNYE-KLVVLVEDIDLAD----PQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 551 ----~--~~~-----~~~~l~e~vr~~P-~sVvlldeiekA~----~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
. ..+ ....+.+.++... ..||+|||++... ..++..|++.++...-.+.+||+|+|.
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 0 011 1234555665543 6799999999864 677888888886543347788888884
No 88
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.31 E-value=2.1e-06 Score=94.55 Aligned_cols=152 Identities=10% Similarity=0.061 Sum_probs=98.0
Q ss_pred CcHHHHHHHHHHHh------------cCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccc
Q 003070 70 VSKEDIKLVFEVFL------------RKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRF 137 (850)
Q Consensus 70 gRdeeirrVieIL~------------Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~ 137 (850)
|.++.++.+.+.+. ++..++.+|.|+||+|||.+++.++..+ +..++.++.+.+ ..
T Consensus 55 G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~----------~~~~~~v~~~~l--~~ 122 (355)
T 2qp9_X 55 GLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSSSDL--VS 122 (355)
T ss_dssp CGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH----------TCEEEEEEHHHH--HS
T ss_pred CHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEeeHHHH--hh
Confidence 66666666666552 2335678999999999999999999876 467888876543 33
Q ss_pred cChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCC
Q 003070 138 MKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASST 217 (850)
Q Consensus 138 ~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG 217 (850)
...|+.+..++.+....+. ..+.||||||++.+.+.... + .....+.++.++-..|.... ....
T Consensus 123 ~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~-~----------~~~~~~~~~~~ll~~l~~~~-~~~~ 186 (355)
T 2qp9_X 123 KWMGESEKLVKQLFAMARE----NKPSIIFIDQVDALTGTRGE-G----------ESEASRRIKTELLVQMNGVG-NDSQ 186 (355)
T ss_dssp CC---CHHHHHHHHHHHHH----TSSEEEEEECGGGGTC-----------------CTHHHHHHHHHHHHHHHCC----C
T ss_pred hhcchHHHHHHHHHHHHHH----cCCeEEEEechHhhcccCCC-C----------cchHHHHHHHHHHHHhhccc-ccCC
Confidence 4567888888888888775 46789999999999865421 0 01244455555544444221 1235
Q ss_pred eEEEEecccHHHHHhhhhcCCcccccccceeeecCCCC
Q 003070 218 RVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 218 ~lwlIGatT~eeY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
.+.+||||.... .-+|+|-|||+ ..+.+|.|.
T Consensus 187 ~v~vI~atn~~~-----~ld~al~rRf~-~~i~i~~P~ 218 (355)
T 2qp9_X 187 GVLVLGATNIPW-----QLDSAIRRRFE-RRIYIPLPD 218 (355)
T ss_dssp CEEEEEEESCGG-----GSCHHHHHTCC-EEEECCCCC
T ss_pred CeEEEeecCCcc-----cCCHHHHcccC-EEEEeCCcC
Confidence 699999986532 45788988764 445666555
No 89
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.31 E-value=4.9e-06 Score=93.95 Aligned_cols=138 Identities=7% Similarity=0.053 Sum_probs=98.9
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeE
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAI 165 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvI 165 (850)
-.+..+|.|+||.|||.+++.+|... ++.|+.++.+.+ -...-||-|.++.++....++ ..+.|
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~----------~~~fi~v~~s~l--~sk~vGesek~ir~lF~~Ar~----~aP~I 278 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQT----------SATFLRIVGSEL--IQKYLGDGPRLCRQIFKVAGE----NAPSI 278 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHH----------TCEEEEEESGGG--CCSSSSHHHHHHHHHHHHHHH----TCSEE
T ss_pred CCCCCceECCCCchHHHHHHHHHHHh----------CCCEEEEEHHHh--hhccCchHHHHHHHHHHHHHh----cCCcE
Confidence 46789999999999999999998863 568999988754 456689999999999999887 46899
Q ss_pred EEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccc--c
Q 003070 166 IYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEI--Q 243 (850)
Q Consensus 166 LfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr--~ 243 (850)
|||||+..+.......+. ++ ...+...++++=+.+.... .++.+-+||||..- -.-||||-| |
T Consensus 279 IfiDEiDai~~~R~~~~~----~~----~~~~~~~l~~LL~~lDg~~--~~~~ViVIaATNrp-----d~LDpALlRpGR 343 (437)
T 4b4t_I 279 VFIDEIDAIGTKRYDSNS----GG----EREIQRTMLELLNQLDGFD--DRGDVKVIMATNKI-----ETLDPALIRPGR 343 (437)
T ss_dssp EEEEEESSSSCCCSCSSC----SS----CCHHHHHHHHHHHHHHHCC--CSSSEEEEEEESCS-----TTCCTTSSCTTT
T ss_pred EEEehhhhhcccCCCCCC----Cc----cHHHHHHHHHHHHHhhCcC--CCCCEEEEEeCCCh-----hhcCHHHhcCCc
Confidence 999999999876532111 01 1233344444333333222 45679999998753 257999999 7
Q ss_pred ccceeeecCCCC
Q 003070 244 WALQAVSIPSGG 255 (850)
Q Consensus 244 W~LQ~V~Vps~~ 255 (850)
||. .|.||-|.
T Consensus 344 fD~-~I~v~lPd 354 (437)
T 4b4t_I 344 IDR-KILFENPD 354 (437)
T ss_dssp EEE-EECCCCCC
T ss_pred eeE-EEEcCCcC
Confidence 763 46666665
No 90
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=1.2e-06 Score=101.33 Aligned_cols=116 Identities=16% Similarity=0.093 Sum_probs=77.2
Q ss_pred cCCCchHHHHHHHHHHHHhhhC---------C----CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCC
Q 003070 485 NVPWQFDSIHSIVEVLVECKSA---------K----KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDG 551 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~g---------k----~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~ 551 (850)
.++||++++..+.+.+...+.+ + +...+||.||+|+|||.+|++||+.+ .-.++.++++.....
T Consensus 40 dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~~~ 116 (516)
T 1sxj_A 40 QVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVRSK 116 (516)
T ss_dssp GCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCCCH
T ss_pred HhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcchH
Confidence 4788888888888887764321 1 23589999999999999999999988 457888887754210
Q ss_pred ------------CCCchhhHHHH----hhhCCCEEEeeccccccCH---HHHHHHHhhhccCccCceEEEEecC
Q 003070 552 ------------VSSHSEMLMGT----LKNYEKLVVLVEDIDLADP---QFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 552 ------------~~~~~~~l~e~----vr~~P~sVvlldeiekA~~---~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.....+.+..+ .....+.||+|||||.... ...+.|++.++++... ||+++|
T Consensus 117 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~---iIli~~ 187 (516)
T 1sxj_A 117 TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTP---LILICN 187 (516)
T ss_dssp HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSC---EEEEES
T ss_pred HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCC---EEEEEc
Confidence 00011111111 1235678999999998754 3447888888876543 444444
No 91
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.29 E-value=4.2e-06 Score=96.36 Aligned_cols=153 Identities=15% Similarity=0.142 Sum_probs=109.0
Q ss_pred CCcHHHHHHHHHHHhc-------------CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccc
Q 003070 69 SVSKEDIKLVFEVFLR-------------KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTL 135 (850)
Q Consensus 69 ~gRdeeirrVieIL~R-------------r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~ 135 (850)
.|.++.++++.+.+.+ +..++.+|.|+||+|||.+++.++... +..++.++.+.+
T Consensus 207 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~fv~vn~~~l-- 274 (489)
T 3hu3_A 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLINGPEI-- 274 (489)
T ss_dssp CSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC----------SSEEEEEEHHHH--
T ss_pred CCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh----------CCCEEEEEchHh--
Confidence 3778888887776653 456778999999999999999998764 568898886644
Q ss_pred cccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCC
Q 003070 136 RFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSAS 215 (850)
Q Consensus 136 ~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~a 215 (850)
....-|+.+.+++.+...... +.+.||||||++.|.+...... .+....++..+-++|.... .
T Consensus 275 ~~~~~g~~~~~~~~~f~~A~~----~~p~iLfLDEId~l~~~~~~~~-----------~~~~~~~~~~LL~~ld~~~--~ 337 (489)
T 3hu3_A 275 MSKLAGESESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKTH-----------GEVERRIVSQLLTLMDGLK--Q 337 (489)
T ss_dssp HTSCTTHHHHHHHHHHHHHHH----TCSEEEEEESHHHHCBCTTSCC-----------CHHHHHHHHHHHHHHHHSC--T
T ss_pred hhhhcchhHHHHHHHHHHHHh----cCCcEEEecchhhhcccccccc-----------chHHHHHHHHHHHHhhccc--c
Confidence 233468888888888888775 4578999999999987543210 1233455666666666432 4
Q ss_pred CCeEEEEecccHHHHHhhhhcCCcccc--cccceeeecCCCCc
Q 003070 216 STRVWLMATASYQTYMKCQMRQPPLEI--QWALQAVSIPSGGL 256 (850)
Q Consensus 216 rG~lwlIGatT~eeY~K~iekdPaLEr--~W~LQ~V~Vps~~~ 256 (850)
++.+.+|+||.... .-+|+|-+ ||+. .+.++.|..
T Consensus 338 ~~~v~vIaaTn~~~-----~Ld~al~r~gRf~~-~i~i~~P~~ 374 (489)
T 3hu3_A 338 RAHVIVMAATNRPN-----SIDPALRRFGRFDR-EVDIGIPDA 374 (489)
T ss_dssp TSCEEEEEEESCGG-----GBCGGGGSTTSSCE-EEECCCCCH
T ss_pred CCceEEEEecCCcc-----ccCHHHhCCCcCce-EEEeCCCCH
Confidence 57899999987652 35799988 6643 366766653
No 92
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.28 E-value=8.8e-06 Score=84.14 Aligned_cols=139 Identities=9% Similarity=0.066 Sum_probs=79.5
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeE
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAI 165 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvI 165 (850)
..++.+|.|+||+|||.+++.++... +..++.++.+.+ .....++.+.+++.+...... ..+.|
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~----~~~~v 101 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA----------QVPFLAMAGAEF--VEVIGGLGAARVRSLFKEARA----RAPCI 101 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH----------TCCEEEEETTTT--SSSSTTHHHHHHHHHHHHHHH----TCSEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEechHHH--HhhccChhHHHHHHHHHHHHh----cCCeE
Confidence 44667899999999999999999875 346777776643 334467778888888887765 45799
Q ss_pred EEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccc--c
Q 003070 166 IYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEI--Q 243 (850)
Q Consensus 166 LfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr--~ 243 (850)
|||||++.+.+........ . . .......+.++-+.+.... ....+.+||+|.... .-+|++-+ |
T Consensus 102 l~iDeid~l~~~~~~~~~~-~--~----~~~~~~~l~~ll~~~~~~~--~~~~~~vi~~tn~~~-----~ld~~l~~~~R 167 (262)
T 2qz4_A 102 VYIDEIDAVGKKRSTTMSG-F--S----NTEEEQTLNQLLVEMDGMG--TTDHVIVLASTNRAD-----ILDGALMRPGR 167 (262)
T ss_dssp EEEECC--------------------------CHHHHHHHHHHHTCC--TTCCEEEEEEESCGG-----GGGSGGGSTTS
T ss_pred EEEeCcchhhccccccccC-c--c----chhHHHHHHHHHHHhhCcC--CCCCEEEEecCCChh-----hcCHHHhcCCc
Confidence 9999999997654221100 0 0 0011122222222222211 235699999886542 33688877 6
Q ss_pred ccceeeecCCCC
Q 003070 244 WALQAVSIPSGG 255 (850)
Q Consensus 244 W~LQ~V~Vps~~ 255 (850)
|+ ..+.++.|+
T Consensus 168 ~~-~~i~i~~p~ 178 (262)
T 2qz4_A 168 LD-RHVFIDLPT 178 (262)
T ss_dssp CC-EEEECCSCC
T ss_pred CC-eEEEeCCcC
Confidence 64 445565554
No 93
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.27 E-value=3e-05 Score=84.47 Aligned_cols=104 Identities=16% Similarity=0.116 Sum_probs=71.8
Q ss_pred cCCCchHHHHHHHHHHHHhhh-CCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHh
Q 003070 485 NVPWQFDSIHSIVEVLVECKS-AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTL 563 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~-gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~v 563 (850)
.++||+.++..+..+|...+. |++...++|.||+|+|||+||++||..+- ..+......-.. ..+.+...+
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~---~~~~~~sg~~~~-----~~~~l~~~~ 97 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ---TNIHVTSGPVLV-----KQGDMAAIL 97 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT---CCEEEEETTTCC-----SHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC---CCEEEEechHhc-----CHHHHHHHH
Confidence 357899999999888876533 44445688999999999999999999882 122211111110 012233322
Q ss_pred hh-CCCEEEeeccccccCHHHHHHHHhhhccCcc
Q 003070 564 KN-YEKLVVLVEDIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 564 r~-~P~sVvlldeiekA~~~v~~~l~q~~d~G~l 596 (850)
.. ..+.|+++||++.-.+.+++.|+..++.+.+
T Consensus 98 ~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~ 131 (334)
T 1in4_A 98 TSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQI 131 (334)
T ss_dssp HHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC
T ss_pred HHccCCCEEEEcchhhcCHHHHHHHHHHHHhccc
Confidence 22 3567999999999999999999999887654
No 94
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.27 E-value=1.2e-06 Score=86.37 Aligned_cols=97 Identities=10% Similarity=0.094 Sum_probs=64.2
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhc-CCCCceEEecCccccCC-----CCCchhhHHHHhhhCCCEEEeecccc--ccC
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVF-GSTDLLFHIDMRKRNDG-----VSSHSEMLMGTLKNYEKLVVLVEDID--LAD 580 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lf-gs~~~~i~idms~~~~~-----~~~~~~~l~e~vr~~P~sVvlldeie--kA~ 580 (850)
...++|.||+|+|||.||++||..+. .....++.+++.+.... ..+....+.+.+. +| .|++|||+. ..+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~llilDE~~~~~~~ 115 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVL-NS-PVLVLDDLGSERLS 115 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHH-TC-SEEEEETCSSSCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhc-CC-CEEEEeCCCCCcCC
Confidence 35788999999999999999999886 22234445555442100 0000113334433 33 599999998 567
Q ss_pred HHHHHHHHhhhccCccCceEEEEecCC
Q 003070 581 PQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 581 ~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
+..+..|.+.++.-.-.+..+|+|||.
T Consensus 116 ~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 116 DWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 888888888887643356778889993
No 95
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=6.9e-06 Score=93.55 Aligned_cols=139 Identities=10% Similarity=0.036 Sum_probs=98.9
Q ss_pred CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCe
Q 003070 85 KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGA 164 (850)
Q Consensus 85 r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gv 164 (850)
+-.+..+|.|+||+|||-+++.+|... ++.|+.++.+.+ ..+.-|+-|.+++++....+. ..+.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~----------~~~fi~vs~s~L--~sk~vGesek~ir~lF~~Ar~----~aP~ 304 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRT----------DATFIRVIGSEL--VQKYVGEGARMVRELFEMART----KKAC 304 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHH----------TCEEEEEEGGGG--CCCSSSHHHHHHHHHHHHHHH----TCSE
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhcc----------CCCeEEEEhHHh--hcccCCHHHHHHHHHHHHHHh----cCCc
Confidence 357789999999999999999999864 567999987744 466789999999999999886 4689
Q ss_pred EEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccc--
Q 003070 165 IIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEI-- 242 (850)
Q Consensus 165 ILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr-- 242 (850)
||||||+..+.......+. + ....+...++++=+-|.... .++.+-+||||.. --.-||||-|
T Consensus 305 IIfiDEiDai~~~R~~~~~-----~---~~~~~~~~l~~lL~~lDg~~--~~~~ViVIaATNr-----pd~LDpALlRpG 369 (467)
T 4b4t_H 305 IIFFDEIDAVGGARFDDGA-----G---GDNEVQRTMLELITQLDGFD--PRGNIKVMFATNR-----PNTLDPALLRPG 369 (467)
T ss_dssp EEEEECCTTTSBCCSSSSC-----G---GGGHHHHHHHHHHHHHHSSC--CTTTEEEEEECSC-----TTSBCHHHHSTT
T ss_pred eEeecccccccccccCcCC-----C---ccHHHHHHHHHHHHHhhccC--CCCcEEEEeCCCC-----cccCChhhhccc
Confidence 9999999999876532210 1 01122333333323332222 4567999999863 2357999998
Q ss_pred cccceeeecCCCC
Q 003070 243 QWALQAVSIPSGG 255 (850)
Q Consensus 243 ~W~LQ~V~Vps~~ 255 (850)
||+ ..|.||-|.
T Consensus 370 RFD-~~I~i~lPd 381 (467)
T 4b4t_H 370 RID-RKVEFSLPD 381 (467)
T ss_dssp TCC-EEECCCCCC
T ss_pred ccc-EEEEeCCcC
Confidence 887 456776666
No 96
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.24 E-value=3.4e-06 Score=95.77 Aligned_cols=153 Identities=9% Similarity=0.084 Sum_probs=96.1
Q ss_pred CcHHHHHHHHHHHh------------cCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccc
Q 003070 70 VSKEDIKLVFEVFL------------RKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRF 137 (850)
Q Consensus 70 gRdeeirrVieIL~------------Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~ 137 (850)
|.++..+.+.+.+. ++..++.+|.|+||+|||.+++.++..+ .+..++.++.+.+ .+
T Consensus 138 G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~---------~~~~~~~v~~~~l--~~ 206 (444)
T 2zan_A 138 GLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---------NNSTFFSISSSDL--VS 206 (444)
T ss_dssp SCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC---------CSSEEEEECCC------
T ss_pred CHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc---------CCCCEEEEeHHHH--Hh
Confidence 66666666666552 2344678999999999999999999865 3567888876643 23
Q ss_pred cChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCC
Q 003070 138 MKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASST 217 (850)
Q Consensus 138 ~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG 217 (850)
...|+.+..++.+....+. ..+.||||||++.+.+..... .....+.++.++-..+.... ...+
T Consensus 207 ~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~~~~~-----------~~~~~~~~~~~lL~~l~~~~-~~~~ 270 (444)
T 2zan_A 207 KWLGESEKLVKNLFQLARE----NKPSIIFIDEIDSLCGSRSEN-----------ESEAARRIKTEFLVQMQGVG-VDND 270 (444)
T ss_dssp -----CCCTHHHHHHHHHH----SCSEEEEESCTTTTCCCSSCC-----------CCGGGHHHHHHHHTTTTCSS-CCCS
T ss_pred hhcchHHHHHHHHHHHHHH----cCCeEEEEechHhhccCCCCc-----------cccHHHHHHHHHHHHHhCcc-cCCC
Confidence 3467777778888877765 457899999999997754211 01234444433333332110 1246
Q ss_pred eEEEEecccHHHHHhhhhcCCcccccccceeeecCCCC
Q 003070 218 RVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 218 ~lwlIGatT~eeY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
.+.+||||..- ..-+|+|-|||+ ..+.+|-|.
T Consensus 271 ~v~vI~atn~~-----~~ld~al~rRf~-~~i~i~~P~ 302 (444)
T 2zan_A 271 GILVLGATNIP-----WVLDSAIRRRFE-KRIYIPLPE 302 (444)
T ss_dssp SCEEEEEESCG-----GGSCHHHHTTCC-EEEECCCCC
T ss_pred CEEEEecCCCc-----cccCHHHHhhcc-eEEEeCCcC
Confidence 79999998654 246899999764 355666555
No 97
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.23 E-value=5.8e-06 Score=95.40 Aligned_cols=119 Identities=14% Similarity=0.144 Sum_probs=79.9
Q ss_pred cCCCchHHHHHHHHHHHHhhh-------C-C-CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCc
Q 003070 485 NVPWQFDSIHSIVEVLVECKS-------A-K-KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSH 555 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~-------g-k-~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~ 555 (850)
.|.||++++..+-+.+...+. | + +.+ +||.||+|+|||.||++||..+ ...++.++.+.+.+...+.
T Consensus 32 dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~G-vLL~GppGtGKTtLaraIa~~~---~~~~i~i~g~~~~~~~~g~ 107 (499)
T 2dhr_A 32 DVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEMFVGV 107 (499)
T ss_dssp SSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSE-EEEECSSSSSHHHHHHHHHHHT---TCCEEEEEGGGGTSSCTTH
T ss_pred HcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCce-EEEECCCCCCHHHHHHHHHHHh---CCCEEEEehhHHHHhhhhh
Confidence 367888877777776655432 1 1 335 8899999999999999999887 3678999988764321121
Q ss_pred hh-hHHHH---hhhCCCEEEeeccccccC--------------HHHHHHHHhhhccCcc-CceEEEEecCC
Q 003070 556 SE-MLMGT---LKNYEKLVVLVEDIDLAD--------------PQFIKILADGFETENF-GKVIFVLTKGD 607 (850)
Q Consensus 556 ~~-~l~e~---vr~~P~sVvlldeiekA~--------------~~v~~~l~q~~d~G~l-~n~Iii~Tsn~ 607 (850)
.. .+... .++...+|+|+||||... ....+.|+..|+.|.- +..|+|.|+|.
T Consensus 108 ~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~ 178 (499)
T 2dhr_A 108 GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNR 178 (499)
T ss_dssp HHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCC
Confidence 11 22222 233334799999998531 2456777788887765 36788888884
No 98
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=7.3e-06 Score=92.96 Aligned_cols=138 Identities=12% Similarity=0.107 Sum_probs=98.8
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeE
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAI 165 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvI 165 (850)
-.+..+|.|+||+|||.+++.+|... ++.|+.++.+.+ ....-|+-|.+++++....+. ..+.|
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~----------~~~f~~v~~s~l--~~~~vGese~~ir~lF~~A~~----~aP~I 277 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQT----------NATFLKLAAPQL--VQMYIGEGAKLVRDAFALAKE----KAPTI 277 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEEEGGGG--CSSCSSHHHHHHHHHHHHHHH----HCSEE
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHh----------CCCEEEEehhhh--hhcccchHHHHHHHHHHHHHh----cCCeE
Confidence 46789999999999999999998863 568999988754 566789999999999998887 35899
Q ss_pred EEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccc--c
Q 003070 166 IYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEI--Q 243 (850)
Q Consensus 166 LfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr--~ 243 (850)
|||||+..|.+.....+. ++ ...+..+++++=+.|.... +++.+-+||||..- -.-||||-| |
T Consensus 278 ifiDEiDal~~~R~~~~~----~~----~~~~~~~~~~lL~~ldg~~--~~~~ViVIaaTNrp-----~~LD~AllRpGR 342 (434)
T 4b4t_M 278 IFIDELDAIGTKRFDSEK----SG----DREVQRTMLELLNQLDGFS--SDDRVKVLAATNRV-----DVLDPALLRSGR 342 (434)
T ss_dssp EEEECTHHHHCCCSSGGG----GT----THHHHHHHHHHHHHHTTSC--SSCSSEEEEECSSC-----CCCCTTTCSTTS
T ss_pred EeecchhhhhhccCCCCC----CC----chHHHHHHHHHHHHhhccC--CCCCEEEEEeCCCc-----hhcCHhHhcCCc
Confidence 999999999876532110 00 1123344444444444332 35668899998642 356999988 7
Q ss_pred ccceeeecCCCC
Q 003070 244 WALQAVSIPSGG 255 (850)
Q Consensus 244 W~LQ~V~Vps~~ 255 (850)
|+ ..|.||-|.
T Consensus 343 fD-~~I~i~lPd 353 (434)
T 4b4t_M 343 LD-RKIEFPLPS 353 (434)
T ss_dssp EE-EEEECCCCC
T ss_pred ee-EEEEeCCcC
Confidence 76 456666665
No 99
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=1.2e-05 Score=91.39 Aligned_cols=139 Identities=12% Similarity=0.058 Sum_probs=99.1
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeE
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAI 165 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvI 165 (850)
-.+..+|.|+||+|||-+++.+|... |+.|+.++.+.+ ...+-|+-|.++..+....+. ..+.|
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~----------~~~~~~v~~s~l--~sk~~Gese~~ir~~F~~A~~----~~P~I 277 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATI----------GANFIFSPASGI--VDKYIGESARIIREMFAYAKE----HEPCI 277 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEEEGGGT--CCSSSSHHHHHHHHHHHHHHH----SCSEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEehhhh--ccccchHHHHHHHHHHHHHHh----cCCce
Confidence 45789999999999999999999864 578999988744 466789999999999998886 46899
Q ss_pred EEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCccccccc
Q 003070 166 IYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWA 245 (850)
Q Consensus 166 LfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr~W~ 245 (850)
|||||+..+.+.....+. + ....+..+++++=+-+.... ..+.+-+||||..- -.-||||-|+=+
T Consensus 278 ifiDEiDai~~~R~~~~~----~----~~~~~~~~l~~lL~~lDg~~--~~~~vivI~ATNrp-----~~LDpAllRpGR 342 (437)
T 4b4t_L 278 IFMDEVDAIGGRRFSEGT----S----ADREIQRTLMELLTQMDGFD--NLGQTKIIMATNRP-----DTLDPALLRPGR 342 (437)
T ss_dssp EEEECCCSSSCCCSSSCC----S----STTHHHHHHHHHHHHHHSSS--CTTSSEEEEEESST-----TSSCTTTTSTTS
T ss_pred eeeecccccccccccCCC----C----cchHHHHHHHHHHHHhhccc--CCCCeEEEEecCCc-----hhhCHHHhCCCc
Confidence 999999999876533221 0 01234444444444444332 45678999988642 256999988633
Q ss_pred c-eeeecCCCC
Q 003070 246 L-QAVSIPSGG 255 (850)
Q Consensus 246 L-Q~V~Vps~~ 255 (850)
| ..|.||-|.
T Consensus 343 fD~~I~i~lPd 353 (437)
T 4b4t_L 343 LDRKVEIPLPN 353 (437)
T ss_dssp EEEEECCCCCC
T ss_pred cceeeecCCcC
Confidence 3 456666665
No 100
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=6.8e-06 Score=93.04 Aligned_cols=135 Identities=13% Similarity=0.141 Sum_probs=98.0
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeE
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAI 165 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvI 165 (850)
-.+..+|.|+||+|||.+++.+|... ++.|+.++.+.+ -...-|+-|.+++++....++ ..+.|
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~----------~~~~~~v~~~~l--~~~~~Ge~e~~ir~lF~~A~~----~aP~I 268 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANST----------KAAFIRVNGSEF--VHKYLGEGPRMVRDVFRLARE----NAPSI 268 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHH----------TCEEEEEEGGGT--CCSSCSHHHHHHHHHHHHHHH----TCSEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEecchh--hccccchhHHHHHHHHHHHHH----cCCCe
Confidence 45678999999999999999999864 578999998754 456689999999999999886 46899
Q ss_pred EEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccc--c
Q 003070 166 IYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEI--Q 243 (850)
Q Consensus 166 LfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr--~ 243 (850)
+||||+..+.+.....+. ++ ......+++++=+.+.... ....+-+||||..- -.-||||-| |
T Consensus 269 ifiDEiD~i~~~R~~~~~----~~----~~~~~r~l~~lL~~ldg~~--~~~~v~vI~aTN~~-----~~LD~AllRpGR 333 (428)
T 4b4t_K 269 IFIDEVDSIATKRFDAQT----GS----DREVQRILIELLTQMDGFD--QSTNVKVIMATNRA-----DTLDPALLRPGR 333 (428)
T ss_dssp EEEECTHHHHCSCSSSCS----CC----CCHHHHHHHHHHHHHHHSC--SSCSEEEEEEESCS-----SSCCHHHHSSSS
T ss_pred eechhhhhhhccccCCCC----CC----ChHHHHHHHHHHHHhhCCC--CCCCEEEEEecCCh-----hhcChhhhcCCc
Confidence 999999999886532110 00 1244556666555554332 34568899998632 256999998 6
Q ss_pred ccceeeecC
Q 003070 244 WALQAVSIP 252 (850)
Q Consensus 244 W~LQ~V~Vp 252 (850)
|+. .|.+|
T Consensus 334 fd~-~I~~p 341 (428)
T 4b4t_K 334 LDR-KIEFP 341 (428)
T ss_dssp EEE-EEECC
T ss_pred ceE-EEEcC
Confidence 553 46665
No 101
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.16 E-value=3.3e-06 Score=101.86 Aligned_cols=112 Identities=16% Similarity=0.261 Sum_probs=72.3
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCC-------CCceEEecCc-cccCCCCCch
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGS-------TDLLFHIDMR-KRNDGVSSHS 556 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs-------~~~~i~idms-~~~~~~~~~~ 556 (850)
.|+||++.+..+...+.+ +....+||.||+|+|||.+|++||..+... ...++.+|+. .|.......+
T Consensus 181 ~iiG~~~~i~~l~~~l~~----~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l 256 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLSR----RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRL 256 (758)
T ss_dssp CCCCCHHHHHHHHHHHHC----SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTH
T ss_pred CccCchHHHHHHHHHHhC----CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHHH
Confidence 589999999999888754 233468999999999999999999998542 4567888872 1111111123
Q ss_pred hhHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 557 EMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 557 ~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
..+.+.+++....||||| ...+.++.|+.+++.|. .++|.|+|.
T Consensus 257 ~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l~~~~---v~~I~at~~ 300 (758)
T 3pxi_A 257 KKVMDEIRQAGNIILFID----AAIDASNILKPSLARGE---LQCIGATTL 300 (758)
T ss_dssp HHHHHHHHTCCCCEEEEC----C--------CCCTTSSS---CEEEEECCT
T ss_pred HHHHHHHHhcCCEEEEEc----CchhHHHHHHHHHhcCC---EEEEeCCCh
Confidence 345555566667799999 67789999999999885 567777773
No 102
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.14 E-value=7.9e-06 Score=87.68 Aligned_cols=155 Identities=12% Similarity=0.132 Sum_probs=97.9
Q ss_pred CcHHHHHHHHHHHhc-------------CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeeccccccc
Q 003070 70 VSKEDIKLVFEVFLR-------------KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLR 136 (850)
Q Consensus 70 gRdeeirrVieIL~R-------------r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~ 136 (850)
|-++-++.+.+.+.. +..++.+|.|+||+|||.+++.++... +..++.++.+.+ .
T Consensus 19 G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~----------~~~~i~v~~~~l--~ 86 (301)
T 3cf0_A 19 GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIKGPEL--L 86 (301)
T ss_dssp SCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT----------TCEEEEECHHHH--H
T ss_pred CHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh----------CCCEEEEEhHHH--H
Confidence 555555555555432 345678999999999999999999864 356777775433 1
Q ss_pred ccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCC
Q 003070 137 FMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASS 216 (850)
Q Consensus 137 ~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~ar 216 (850)
...-|+.+.++..+...... ..+.||||||++.+......... . + ....+.++.++-+.|.... ..
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~--~-~-----~~~~~~~~~~lL~~l~~~~--~~ 152 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIG--D-G-----GGAADRVINQILTEMDGMS--TK 152 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHH----TCSEEEEECSTTHHHHHHTTTTC--C-S-----SCSCCHHHHHHHHHHHSSC--TT
T ss_pred hhhcCchHHHHHHHHHHHHh----cCCeEEEEEChHHHhhccCCCcC--C-c-----chHHHHHHHHHHHHhhccc--CC
Confidence 12235556677777777765 45789999999999865321100 0 0 1133344555555554322 34
Q ss_pred CeEEEEecccHHHHHhhhhcCCcccc--cccceeeecCCCCc
Q 003070 217 TRVWLMATASYQTYMKCQMRQPPLEI--QWALQAVSIPSGGL 256 (850)
Q Consensus 217 G~lwlIGatT~eeY~K~iekdPaLEr--~W~LQ~V~Vps~~~ 256 (850)
..+.+||||.... .-||++-| ||+ ..+.+|.|..
T Consensus 153 ~~v~vi~atn~~~-----~ld~al~r~gRf~-~~i~i~~p~~ 188 (301)
T 3cf0_A 153 KNVFIIGATNRPD-----IIDPAILRPGRLD-QLIYIPLPDE 188 (301)
T ss_dssp SSEEEEEEESCGG-----GSCGGGGSTTSSC-EEEECCCCCH
T ss_pred CCEEEEEecCCcc-----ccChHHhcCCccc-eEEecCCcCH
Confidence 5799999986542 35788887 665 4567766653
No 103
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.13 E-value=9.7e-06 Score=86.21 Aligned_cols=96 Identities=17% Similarity=0.196 Sum_probs=65.5
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCC----chhhHHHHhhhCCCEEEeecccccc----
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSS----HSEMLMGTLKNYEKLVVLVEDIDLA---- 579 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~----~~~~l~e~vr~~P~sVvlldeiekA---- 579 (850)
+.| ++|.||+|+|||.||++||..+ + ..++.++..+......+ .+..+-+..+....+|+++|||+..
T Consensus 44 ~~G-vlL~Gp~GtGKTtLakala~~~-~--~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r 119 (274)
T 2x8a_A 44 PAG-VLLAGPPGCGKTLLAKAVANES-G--LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRR 119 (274)
T ss_dssp CSE-EEEESSTTSCHHHHHHHHHHHT-T--CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC--
T ss_pred CCe-EEEECCCCCcHHHHHHHHHHHc-C--CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhccc
Confidence 345 9999999999999999999876 2 35888887654221111 1234444445555679999999963
Q ss_pred -------CHHHHHHHHhhhccCcc-CceEEEEecCC
Q 003070 580 -------DPQFIKILADGFETENF-GKVIFVLTKGD 607 (850)
Q Consensus 580 -------~~~v~~~l~q~~d~G~l-~n~Iii~Tsn~ 607 (850)
...+.+.++..|+.|.- +..|++.++|.
T Consensus 120 ~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~ 155 (274)
T 2x8a_A 120 SDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNR 155 (274)
T ss_dssp -------CTTHHHHHHHHHHTCCSTTCEEEEEEESC
T ss_pred CCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCC
Confidence 12456677777887764 36777777774
No 104
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.10 E-value=2.5e-05 Score=81.15 Aligned_cols=137 Identities=9% Similarity=0.087 Sum_probs=82.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeEE
Q 003070 87 RRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAII 166 (850)
Q Consensus 87 K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvIL 166 (850)
.++.+|+|+||+|||.+++.++... +..++.++.+.+ .....++.+.++..+...... ..+.||
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~a~~----~~~~il 108 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFTISGSDF--VEMFVGVGASRVRDMFEQAKK----AAPCII 108 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH----------TCCEEEECSCSS--TTSCCCCCHHHHHHHHHHHHT----TCSEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc----------CCCEEEEeHHHH--HHHhhhhhHHHHHHHHHHHHH----cCCeee
Confidence 5578899999999999999998865 234666665433 223344556677777777664 457899
Q ss_pred EecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccc--cc
Q 003070 167 YTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEI--QW 244 (850)
Q Consensus 167 fIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr--~W 244 (850)
||||++.+.......- ++ .......++.++-..+.... ....+.+|+||...+ .-+|++-| ||
T Consensus 109 ~iDeid~l~~~~~~~~-----~~---~~~~~~~~~~~ll~~l~~~~--~~~~~~vI~~tn~~~-----~l~~~l~r~~rf 173 (257)
T 1lv7_A 109 FIDEIDAVGRQRGAGL-----GG---GHDEREQTLNQMLVEMDGFE--GNEGIIVIAATNRPD-----VLDPALLRPGRF 173 (257)
T ss_dssp EETTHHHHTCCCSTTS-----CC---TTCHHHHHHHHHHHHHHTCC--SSSCEEEEEEESCTT-----TSCGGGGSTTSS
T ss_pred hhhhhhhhccCCCCCc-----CC---CchHHHHHHHHHHHHhhCcc--cCCCEEEEEeeCCch-----hCCHHHcCCCcC
Confidence 9999999976542110 00 01112223332222222111 245689999876542 35788877 66
Q ss_pred cceeeecCCCC
Q 003070 245 ALQAVSIPSGG 255 (850)
Q Consensus 245 ~LQ~V~Vps~~ 255 (850)
+. .+.++-|.
T Consensus 174 ~~-~i~i~~P~ 183 (257)
T 1lv7_A 174 DR-QVVVGLPD 183 (257)
T ss_dssp CE-EEECCCCC
T ss_pred Ce-EEEeCCCC
Confidence 53 56665555
No 105
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.08 E-value=5.3e-05 Score=79.45 Aligned_cols=151 Identities=10% Similarity=0.074 Sum_probs=90.1
Q ss_pred CcHHHHHHHHH-------HHh---cCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccC
Q 003070 70 VSKEDIKLVFE-------VFL---RKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMK 139 (850)
Q Consensus 70 gRdeeirrVie-------IL~---Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~ 139 (850)
+.++.++.+++ .+. ++..++.+|.|+||+|||.+++.+++.. +..++.++.+.. +-+..
T Consensus 37 ~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~----------~~~~~~i~~~~~-~~g~~ 105 (272)
T 1d2n_A 37 KWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES----------NFPFIKICSPDK-MIGFS 105 (272)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH----------TCSEEEEECGGG-CTTCC
T ss_pred CccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEeCHHH-hcCCc
Confidence 45555555555 332 4455678899999999999999999873 345677664432 23334
Q ss_pred hhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeE
Q 003070 140 KEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRV 219 (850)
Q Consensus 140 RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~l 219 (850)
.++...++.++...... ..+.||||||++.+++...... ..-..+...+-.++.... .....+
T Consensus 106 ~~~~~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~------------~~~~~~l~~L~~~~~~~~-~~~~~~ 168 (272)
T 1d2n_A 106 ETAKCQAMKKIFDDAYK----SQLSCVVVDDIERLLDYVPIGP------------RFSNLVLQALLVLLKKAP-PQGRKL 168 (272)
T ss_dssp HHHHHHHHHHHHHHHHT----SSEEEEEECCHHHHTTCBTTTT------------BCCHHHHHHHHHHTTCCC-STTCEE
T ss_pred hHHHHHHHHHHHHHHHh----cCCcEEEEEChhhhhccCCCCh------------hHHHHHHHHHHHHhcCcc-CCCCCE
Confidence 56666677777766653 4578999999999987543110 011122222333443210 123468
Q ss_pred EEEecccHHHHHhhhhcCCcccccccceeeecCC
Q 003070 220 WLMATASYQTYMKCQMRQPPLEIQWALQAVSIPS 253 (850)
Q Consensus 220 wlIGatT~eeY~K~iekdPaLEr~W~LQ~V~Vps 253 (850)
.+|+||...+...- ..+.+||. +.+.+|.
T Consensus 169 ~ii~ttn~~~~l~~----~~l~~rf~-~~i~~p~ 197 (272)
T 1d2n_A 169 LIIGTTSRKDVLQE----MEMLNAFS-TTIHVPN 197 (272)
T ss_dssp EEEEEESCHHHHHH----TTCTTTSS-EEEECCC
T ss_pred EEEEecCChhhcch----hhhhcccc-eEEcCCC
Confidence 88998876654321 14556663 4456654
No 106
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.06 E-value=1.2e-05 Score=83.44 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=63.2
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCc----hhhHHHHhhhCCCEEEeecccccc----
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSH----SEMLMGTLKNYEKLVVLVEDIDLA---- 579 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~----~~~l~e~vr~~P~sVvlldeiekA---- 579 (850)
+.+ ++|.||+|+|||.||++||..+- ..++.++.........+. +..+.+..+....+++++|||+..
T Consensus 49 ~~g-~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~ 124 (254)
T 1ixz_A 49 PKG-VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKR 124 (254)
T ss_dssp CSE-EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC--
T ss_pred CCe-EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhccc
Confidence 345 88999999999999999998872 567888765432111111 234444445455689999999742
Q ss_pred -------C---HHHHHHHHhhhccCccC-ceEEEEecCC
Q 003070 580 -------D---PQFIKILADGFETENFG-KVIFVLTKGD 607 (850)
Q Consensus 580 -------~---~~v~~~l~q~~d~G~l~-n~Iii~Tsn~ 607 (850)
+ ....+.+++.++.|.-. ..|++.|+|.
T Consensus 125 ~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~ 163 (254)
T 1ixz_A 125 GSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNR 163 (254)
T ss_dssp -------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESC
T ss_pred CccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCC
Confidence 1 23456777778877654 4566666653
No 107
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.02 E-value=1.5e-05 Score=84.19 Aligned_cols=95 Identities=17% Similarity=0.180 Sum_probs=62.2
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCC----chhhHHHHhhhCCCEEEeecccccc-----
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSS----HSEMLMGTLKNYEKLVVLVEDIDLA----- 579 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~----~~~~l~e~vr~~P~sVvlldeiekA----- 579 (850)
.+ ++|.||+|+|||.||++||..+- ..++.++.........+ .+..+.+..+....+++++|||+..
T Consensus 74 ~g-vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~ 149 (278)
T 1iy2_A 74 KG-VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG 149 (278)
T ss_dssp CE-EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--
T ss_pred Ce-EEEECCCcChHHHHHHHHHHHcC---CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccc
Confidence 35 88999999999999999999873 56788876543111111 1234444445455679999999742
Q ss_pred ------C---HHHHHHHHhhhccCccC-ceEEEEecCC
Q 003070 580 ------D---PQFIKILADGFETENFG-KVIFVLTKGD 607 (850)
Q Consensus 580 ------~---~~v~~~l~q~~d~G~l~-n~Iii~Tsn~ 607 (850)
+ ....+.+++.++.|.-. ..|++.|+|.
T Consensus 150 ~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~ 187 (278)
T 1iy2_A 150 SGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNR 187 (278)
T ss_dssp ------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESC
T ss_pred cccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCC
Confidence 1 23445566667777653 4666666664
No 108
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.99 E-value=9.4e-06 Score=98.82 Aligned_cols=120 Identities=14% Similarity=0.175 Sum_probs=83.9
Q ss_pred cCCCchHHHHHHHHHHHHhhh--------C-CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCc
Q 003070 485 NVPWQFDSIHSIVEVLVECKS--------A-KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSH 555 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~--------g-k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~ 555 (850)
.|+|+++++..|-+.+..... + ++...+||.||+|+|||.||++||..+ ...++.++.++......+.
T Consensus 205 di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~i~v~~~~l~~~~~g~ 281 (806)
T 1ypw_A 205 DVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKLAGE 281 (806)
T ss_dssp GCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEEEEEEHHHHSSSSTTH
T ss_pred HhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcEEEEEchHhhhhhhhh
Confidence 478999999998888876322 2 345578899999999999999999886 4678888876542221221
Q ss_pred ----hhhHHHHhhhCCCEEEeecccccc-----------CHHHHHHHHhhhccCcc-CceEEEEecCC
Q 003070 556 ----SEMLMGTLKNYEKLVVLVEDIDLA-----------DPQFIKILADGFETENF-GKVIFVLTKGD 607 (850)
Q Consensus 556 ----~~~l~e~vr~~P~sVvlldeiekA-----------~~~v~~~l~q~~d~G~l-~n~Iii~Tsn~ 607 (850)
+..+.+..+.+..+|+|+|||+.. ...++..|++.++.-+- .+.++|+|+|.
T Consensus 282 ~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~ 349 (806)
T 1ypw_A 282 SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (806)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSC
T ss_pred HHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCC
Confidence 223333344455579999999654 24577778887774433 37889999983
No 109
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.99 E-value=5.9e-06 Score=80.07 Aligned_cols=87 Identities=13% Similarity=0.074 Sum_probs=61.2
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhhhCCCEEEeeccccccCHHHHHHHH
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILA 588 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~ 588 (850)
...++|.||+|+|||.|+++|+..+..+....+.++..+.... ++..+| .|++|||+...++.-+..|+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~----------~~~~~~-~lLilDE~~~~~~~~~~~l~ 104 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT----------DAAFEA-EYLAVDQVEKLGNEEQALLF 104 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC----------GGGGGC-SEEEEESTTCCCSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH----------HHHhCC-CEEEEeCccccChHHHHHHH
Confidence 3578899999999999999999988754445777777654221 223444 59999999987765577777
Q ss_pred hhhccCccC-ceEEEEecC
Q 003070 589 DGFETENFG-KVIFVLTKG 606 (850)
Q Consensus 589 q~~d~G~l~-n~Iii~Tsn 606 (850)
+.|+.=+=. .+++|+|||
T Consensus 105 ~li~~~~~~g~~~iiits~ 123 (149)
T 2kjq_A 105 SIFNRFRNSGKGFLLLGSE 123 (149)
T ss_dssp HHHHHHHHHTCCEEEEEES
T ss_pred HHHHHHHHcCCcEEEEECC
Confidence 766532211 234777888
No 110
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.98 E-value=3e-06 Score=91.78 Aligned_cols=97 Identities=15% Similarity=0.095 Sum_probs=57.0
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhc-CCCCceEEecCccccC-----CCCCchhhHHHHhhhCCCEEEeecccc--ccC
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVF-GSTDLLFHIDMRKRND-----GVSSHSEMLMGTLKNYEKLVVLVEDID--LAD 580 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lf-gs~~~~i~idms~~~~-----~~~~~~~~l~e~vr~~P~sVvlldeie--kA~ 580 (850)
...++|.||+|+|||.||.+||..+. .....++.+.+..+.. -..+-.+.+.+.+.+. .||+||||. ..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--~lLiiDdig~~~~~ 229 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNV--PVLILDDIGAEQAT 229 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHTS--SEEEEETCCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcCC--CEEEEcCCCCCCCC
Confidence 46899999999999999999999887 5555666665543210 0111122333444443 499999994 444
Q ss_pred HHHHH-HHHhhhccCccCceEEEEecCC
Q 003070 581 PQFIK-ILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 581 ~~v~~-~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
+..+. +|.++++.-.-.+..+|+|||-
T Consensus 230 ~~~~~~ll~~ll~~r~~~~~~~IitSN~ 257 (308)
T 2qgz_A 230 SWVRDEVLQVILQYRMLEELPTFFTSNY 257 (308)
T ss_dssp --CTTTTHHHHHHHHHHHTCCEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHCCCcEEEECCC
Confidence 44444 3333554322235568889994
No 111
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.97 E-value=1.8e-05 Score=85.84 Aligned_cols=158 Identities=12% Similarity=0.099 Sum_probs=91.8
Q ss_pred CCcHHHHHHHHHHHhc----CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeeccccc----------
Q 003070 69 SVSKEDIKLVFEVFLR----KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVT---------- 134 (850)
Q Consensus 69 ~gRdeeirrVieIL~R----r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~---------- 134 (850)
.||+++++++.+.|.+ ...++.+|.|++|+|||.+++.+++.+.... +..=.+..++.++.....
T Consensus 22 ~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 100 (387)
T 2v1u_A 22 PHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARA-SSLGVLVKPIYVNARHRETPYRVASAIA 100 (387)
T ss_dssp TTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHH-HHHTCCEEEEEEETTTSCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHH-hccCCCeEEEEEECCcCCCHHHHHHHHH
Confidence 4899999999998854 3567899999999999999999998875420 000014567776643210
Q ss_pred --------ccccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhh
Q 003070 135 --------LRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGK 206 (850)
Q Consensus 135 --------~~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~n 206 (850)
..+.. ..+-+..+...+.. .+..+||+|||+|++..... ...+ +.+
T Consensus 101 ~~l~~~~~~~~~~---~~~~~~~l~~~l~~---~~~~~vlilDEi~~l~~~~~-----------------~~~~---l~~ 154 (387)
T 2v1u_A 101 EAVGVRVPFTGLS---VGEVYERLVKRLSR---LRGIYIIVLDEIDFLPKRPG-----------------GQDL---LYR 154 (387)
T ss_dssp HHHSCCCCSSCCC---HHHHHHHHHHHHTT---SCSEEEEEEETTTHHHHSTT-----------------HHHH---HHH
T ss_pred HHhCCCCCCCCCC---HHHHHHHHHHHHhc---cCCeEEEEEccHhhhcccCC-----------------CChH---HHh
Confidence 00111 22223344444443 25589999999999976420 0111 223
Q ss_pred hcccccCCC-CCeEEEEecccHHHHHhhhhcCCcccccccceeeecCCCC
Q 003070 207 LVSDCNSAS-STRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 207 LLkp~l~~a-rG~lwlIGatT~eeY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
|+.-..... .+.+.+||+|+...+... -+|.+-+|+..+.+.+|..+
T Consensus 155 l~~~~~~~~~~~~~~~I~~t~~~~~~~~--l~~~l~~r~~~~~i~l~~l~ 202 (387)
T 2v1u_A 155 ITRINQELGDRVWVSLVGITNSLGFVEN--LEPRVKSSLGEVELVFPPYT 202 (387)
T ss_dssp HHHGGGCC-----CEEEEECSCSTTSSS--SCHHHHTTTTSEECCBCCCC
T ss_pred HhhchhhcCCCceEEEEEEECCCchHhh--hCHHHHhcCCCeEEeeCCCC
Confidence 333110001 457899999876544332 25666666544566666554
No 112
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.91 E-value=7.4e-05 Score=85.75 Aligned_cols=138 Identities=9% Similarity=0.082 Sum_probs=85.7
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeEE
Q 003070 87 RRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAII 166 (850)
Q Consensus 87 K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvIL 166 (850)
.++.+|+|+||+|||-+++.++... +..++.+..+.+ ..+.-|.-+.+++.+...... ..+.||
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~----------~~~f~~is~~~~--~~~~~g~~~~~~r~lf~~A~~----~~p~IL 112 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA----------NVPFFHISGSDF--VELFVGVGAARVRDLFAQAKA----HAPCIV 112 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGGGT--TTCCTTHHHHHHHHHHHHHHH----TCSEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc----------CCCeeeCCHHHH--HHHHhcccHHHHHHHHHHHHh----cCCCEE
Confidence 3568899999999999999999864 345777765533 334456777888888887775 467999
Q ss_pred EecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccccccc
Q 003070 167 YTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWAL 246 (850)
Q Consensus 167 fIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr~W~L 246 (850)
||||++.+.......- +| ..+....++.++-+.+.... .+..+.+|+||...+ .-||+|-|..+|
T Consensus 113 fIDEid~l~~~r~~~~-----~g---~~~~~~~~l~~LL~~ld~~~--~~~~viVIaaTn~~~-----~Ld~allR~gRF 177 (476)
T 2ce7_A 113 FIDEIDAVGRHRGAGL-----GG---GHDEREQTLNQLLVEMDGFD--SKEGIIVMAATNRPD-----ILDPALLRPGRF 177 (476)
T ss_dssp EEETGGGTCCC-----------------CHHHHHHHHHHHHHHHSC--GGGTEEEEEEESCGG-----GSCGGGGSTTSS
T ss_pred EEechhhhhhhccccc-----Cc---CcHHHHHHHHHHHHHHhccC--CCCCEEEEEecCChh-----hhchhhcccCcc
Confidence 9999999966432100 00 01122233333333332221 234699999987642 357888873334
Q ss_pred e-eeecCCCC
Q 003070 247 Q-AVSIPSGG 255 (850)
Q Consensus 247 Q-~V~Vps~~ 255 (850)
. .+.|+.|.
T Consensus 178 d~~i~i~~Pd 187 (476)
T 2ce7_A 178 DKKIVVDPPD 187 (476)
T ss_dssp CEEEECCCCC
T ss_pred eeEeecCCCC
Confidence 3 45666555
No 113
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.91 E-value=3.5e-05 Score=83.39 Aligned_cols=157 Identities=10% Similarity=0.161 Sum_probs=94.0
Q ss_pred CCcHHHHHHHHHHHhc----CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeeccccc----------
Q 003070 69 SVSKEDIKLVFEVFLR----KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVT---------- 134 (850)
Q Consensus 69 ~gRdeeirrVieIL~R----r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~---------- 134 (850)
.||+++++++.+.|.+ +..++.+|.|++|+|||.+++.++..+.... +. +..++.++.....
T Consensus 23 ~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~-~~---~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 23 PHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF-LG---KFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp TTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHT-CS---SCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHh-cC---CceEEEEECCCCCCHHHHHHHHH
Confidence 4899999999998874 3566899999999999999999998875421 00 4566666632110
Q ss_pred --cc--ccChh-HHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcc
Q 003070 135 --LR--FMKKE-EVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVS 209 (850)
Q Consensus 135 --~~--~~~Rg-efE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLk 209 (850)
++ ...++ ...+.+..+...+.. .+.+.||+|||++++...... +. +..+-+++.
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~vlilDE~~~l~~~~~~--------------~~----l~~l~~~~~ 157 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRD---YGSQVVIVLDEIDAFVKKYND--------------DI----LYKLSRINS 157 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHT---CCSCEEEEEETHHHHHHSSCS--------------TH----HHHHHHHHH
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhc---cCCeEEEEEcChhhhhccCcC--------------HH----HHHHhhchh
Confidence 00 00011 123334445455544 245899999999999864310 12 123334442
Q ss_pred cccCCCCCeEEEEecccHHHHHhhhhcCCcccccccceeeecCCCC
Q 003070 210 DCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 210 p~l~~arG~lwlIGatT~eeY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
.. ..+.+.+|++|+...++.. -++.+-+++..+.+.++..+
T Consensus 158 ~~---~~~~~~~I~~~~~~~~~~~--~~~~~~~r~~~~~i~l~~l~ 198 (386)
T 2qby_A 158 EV---NKSKISFIGITNDVKFVDL--LDPRVKSSLSEEEIIFPPYN 198 (386)
T ss_dssp SC---CC--EEEEEEESCGGGGGG--CTTHHHHTTTTEEEEECCCC
T ss_pred hc---CCCeEEEEEEECCCChHhh--hCHHHhccCCCeeEEeCCCC
Confidence 11 2357999999876555432 35666665543566666544
No 114
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.89 E-value=2.1e-05 Score=86.51 Aligned_cols=123 Identities=14% Similarity=0.098 Sum_probs=84.5
Q ss_pred ccCCCchHHHHHHHHHH-HHhhhC--CCCeEEEE--ecCCchHHHHHHHHHHHHhcCC------CCceEEecCccccC--
Q 003070 484 ENVPWQFDSIHSIVEVL-VECKSA--KKATWFLL--QGNDTIGKRRLALSIAESVFGS------TDLLFHIDMRKRND-- 550 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av-~~~r~g--k~~~~~lf--~Gp~gvGKt~lA~~LA~~lfgs------~~~~i~idms~~~~-- 550 (850)
..++|.++.+..+.+.+ ..+..| .....+++ .||.|+|||.||+++++.+-.. .-.++.+++.....
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 45788888888888888 777666 45567888 9999999999999999887431 34567777643210
Q ss_pred ------------CCC--Cc-----hhhHHHHhhh-CCCEEEeeccccccC------HHHHHHHHhhhccCc--c--CceE
Q 003070 551 ------------GVS--SH-----SEMLMGTLKN-YEKLVVLVEDIDLAD------PQFIKILADGFETEN--F--GKVI 600 (850)
Q Consensus 551 ------------~~~--~~-----~~~l~e~vr~-~P~sVvlldeiekA~------~~v~~~l~q~~d~G~--l--~n~I 600 (850)
..+ +. ...|.+.+.. ....||+|||++..+ ..++..|++.++... = .+..
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 011 11 2244555542 335699999999853 588888888887644 1 4677
Q ss_pred EEEecC
Q 003070 601 FVLTKG 606 (850)
Q Consensus 601 ii~Tsn 606 (850)
||+|+|
T Consensus 182 lI~~~~ 187 (412)
T 1w5s_A 182 FLLVAS 187 (412)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 888876
No 115
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.86 E-value=1.8e-05 Score=83.57 Aligned_cols=160 Identities=13% Similarity=0.138 Sum_probs=91.4
Q ss_pred CcHHHHHHHHHHHhc--------------CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccc
Q 003070 70 VSKEDIKLVFEVFLR--------------KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTL 135 (850)
Q Consensus 70 gRdeeirrVieIL~R--------------r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~ 135 (850)
|.++.++.+...+.+ +..++.+|.|+||+|||.+++.+++.+ +..++.++.+.+.-
T Consensus 19 G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l----------~~~~~~i~~~~~~~ 88 (310)
T 1ofh_A 19 GQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATKFTE 88 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGGGGSS
T ss_pred ChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEcchhccc
Confidence 788888888887765 356789999999999999999999876 23577777654321
Q ss_pred cccChhHHHHHHHHHHHH----HhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhh-hhHHhhhhccc
Q 003070 136 RFMKKEEVEMNLTELKRK----VDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINH-LVSEVGKLVSD 210 (850)
Q Consensus 136 ~~~~RgefE~RlkeL~~~----V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~-~V~El~nLLkp 210 (850)
.+....+.+..++++... ++. .+.+.||||||++.+....... + ++..+. +...+-++|..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vl~iDEi~~l~~~~~~~-------~----~~~~~~~~~~~Ll~~le~ 154 (310)
T 1ofh_A 89 VGYVGKEVDSIIRDLTDSAGGAIDA---VEQNGIVFIDEIDKICKKGEYS-------G----ADVSREGVQRDLLPLVEG 154 (310)
T ss_dssp CCSGGGSTTHHHHHHHHTTTTCHHH---HHHHCEEEEECGGGGSCCSSCC-------S----SHHHHHHHHHHHHHHHHC
T ss_pred CCccCccHHHHHHHHHHHhhHHHhh---ccCCCEEEEEChhhcCcccccc-------c----cchhHHHHHHHHHHHhcC
Confidence 011122333445555442 221 1236799999999997654210 0 122111 11222233331
Q ss_pred cc------CCCCCeEEEEecccHHHHHhhhhcCCcccccccceeeecCCCC
Q 003070 211 CN------SASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 211 ~l------~~arG~lwlIGatT~eeY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
.. ....+.+.+|+++++++... ..-+|+|-.|++ ..+.+|.++
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~l~~~l~~R~~-~~i~~~~~~ 203 (310)
T 1ofh_A 155 STVSTKHGMVKTDHILFIASGAFQVARP-SDLIPELQGRLP-IRVELTALS 203 (310)
T ss_dssp CEEEETTEEEECTTCEEEEEECCSSSCG-GGSCHHHHHTCC-EEEECCCCC
T ss_pred CeEecccccccCCcEEEEEcCCcccCCc-ccCCHHHHhhCC-ceEEcCCcC
Confidence 10 00113588898864321111 245688888765 446666555
No 116
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.84 E-value=9.1e-05 Score=80.65 Aligned_cols=152 Identities=8% Similarity=0.016 Sum_probs=90.6
Q ss_pred CCCcHHHHHHHHHHHhc----CCCC--CeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeeccccc-------
Q 003070 68 ASVSKEDIKLVFEVFLR----KKRR--NTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVT------- 134 (850)
Q Consensus 68 ~~gRdeeirrVieIL~R----r~K~--NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~------- 134 (850)
..||+++++++.+.|.+ +..+ +.+|+|++|+|||.+++.++..+.... +..++.++.....
T Consensus 19 l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~------~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 19 LPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT------TARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp CTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC------CCEEEEEETTTCCSHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc------CeeEEEEeCccCCCHHHHHH
Confidence 34899999999999976 3334 789999999999999999998876432 4566766632110
Q ss_pred -----c------cccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHH
Q 003070 135 -----L------RFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSE 203 (850)
Q Consensus 135 -----~------~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~E 203 (850)
+ .+...+++ +..+...+.. .++..||+|||++++ +. ... ..
T Consensus 93 ~l~~~l~~~~~~~~~~~~~~---~~~l~~~l~~---~~~~~vlilDE~~~l---~~---------------~~~----~~ 144 (389)
T 1fnn_A 93 EIARSLNIPFPRRGLSRDEF---LALLVEHLRE---RDLYMFLVLDDAFNL---AP---------------DIL----ST 144 (389)
T ss_dssp HHHHHTTCCCCSSCCCHHHH---HHHHHHHHHH---TTCCEEEEEETGGGS---CH---------------HHH----HH
T ss_pred HHHHHhCccCCCCCCCHHHH---HHHHHHHHhh---cCCeEEEEEECcccc---ch---------------HHH----HH
Confidence 0 01122222 2333333333 256899999999998 11 121 22
Q ss_pred hhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccccccceeeecCCCC
Q 003070 204 VGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 204 l~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
+.+++.......+..+.+|++++...+... -++.+-+++....+.+|..+
T Consensus 145 L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~--l~~~~~~r~~~~~i~~~pl~ 194 (389)
T 1fnn_A 145 FIRLGQEADKLGAFRIALVIVGHNDAVLNN--LDPSTRGIMGKYVIRFSPYT 194 (389)
T ss_dssp HHHHTTCHHHHSSCCEEEEEEESSTHHHHT--SCHHHHHHHTTCEEECCCCB
T ss_pred HHHHHHhCCCCCcCCEEEEEEECCchHHHH--hCHHhhhcCCCceEEeCCCC
Confidence 345553211000136889998765555443 24566666544456665443
No 117
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.82 E-value=2e-05 Score=95.63 Aligned_cols=138 Identities=12% Similarity=0.139 Sum_probs=92.6
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeE
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAI 165 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvI 165 (850)
..+..+|.|+||.|||.+++.+|... +..+++++.+.+ -.++-||-|..+++|.+..++ ..+.|
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~----------~~~f~~v~~~~l--~s~~vGese~~vr~lF~~Ar~----~~P~I 573 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIKGPEL--LTMWFGESEANVREIFDKARQ----AAPCV 573 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTT----------TCEEEECCHHHH--HTTTCSSCHHHHHHHHHHHHT----TCSEE
T ss_pred CCceEEEecCCCCCchHHHHHHHHHh----------CCceEEeccchh--hccccchHHHHHHHHHHHHHH----cCCce
Confidence 34578999999999999999998753 567888887644 355678889999999999986 46899
Q ss_pred EEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccc--c
Q 003070 166 IYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEI--Q 243 (850)
Q Consensus 166 LfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr--~ 243 (850)
|||||+..|.+....... + ..+..+.+|+++=..+.... .+..+-+||||..- -.-||||-| |
T Consensus 574 ifiDEiDsl~~~R~~~~~--~------~~~~~~rv~~~lL~~mdg~~--~~~~V~vi~aTN~p-----~~lD~AllRpgR 638 (806)
T 3cf2_A 574 LFFDELDSIAKARGGNIG--D------GGGAADRVINQILTEMDGMS--TKKNVFIIGATNRP-----DIIDPAILRPGR 638 (806)
T ss_dssp EECSCGGGCC----------------------CHHHHHHHHHHHSSC--SSSSEEEECC-CCS-----SSSCHHHHSTTT
T ss_pred eechhhhHHhhccCCCCC--C------CchHHHHHHHHHHHHHhCCC--CCCCEEEEEeCCCc-----hhCCHhHcCCCc
Confidence 999999999876532110 0 01356677777766665432 35569999998632 356999999 7
Q ss_pred ccceeeecCCCC
Q 003070 244 WALQAVSIPSGG 255 (850)
Q Consensus 244 W~LQ~V~Vps~~ 255 (850)
|+. .|.||-|.
T Consensus 639 fd~-~i~v~lPd 649 (806)
T 3cf2_A 639 LDQ-LIYIPLPD 649 (806)
T ss_dssp SCC-EEEC----
T ss_pred ceE-EEEECCcC
Confidence 763 45665555
No 118
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.75 E-value=6.7e-06 Score=85.86 Aligned_cols=153 Identities=11% Similarity=0.120 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhc---------CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhH
Q 003070 72 KEDIKLVFEVFLR---------KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEE 142 (850)
Q Consensus 72 deeirrVieIL~R---------r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~Rge 142 (850)
.+.++++++.+.. +..++.+|.|+||+|||.+++.++..... .++.++.+.+ .....++
T Consensus 20 ~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~----------~~~~v~~~~~--~~~~~~~ 87 (268)
T 2r62_A 20 KEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV----------PFFSMGGSSF--IEMFVGL 87 (268)
T ss_dssp HHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC----------CCCCCCSCTT--TTSCSSS
T ss_pred HHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC----------CEEEechHHH--HHhhcch
Confidence 4556665554331 33567889999999999999999987632 2333332211 1111111
Q ss_pred HHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccC--CCCCeEE
Q 003070 143 VEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNS--ASSTRVW 220 (850)
Q Consensus 143 fE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~--~arG~lw 220 (850)
-+.++..+...+.. ....||||||++.+.......+.. ++ ......+ +..||+..-+ ...+.+.
T Consensus 88 ~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~---~~----~~~~~~~---~~~ll~~l~~~~~~~~~v~ 153 (268)
T 2r62_A 88 GASRVRDLFETAKK----QAPSIIFIDEIDAIGKSRAAGGVV---SG----NDEREQT---LNQLLAEMDGFGSENAPVI 153 (268)
T ss_dssp CSSSSSTTHHHHHH----SCSCEEEESCGGGTTC-----------------CCCSCSS---TTTTTTTTTCSSCSCSCCE
T ss_pred HHHHHHHHHHHHHh----cCCeEEEEeChhhhcccccccccC---CC----chhHHHH---HHHHHHHhhCcccCCCCEE
Confidence 12233334444443 346799999999997754211100 00 0011111 1234442210 1234589
Q ss_pred EEecccHHHHHhhhhcCCcccccccc-eeeecCCCC
Q 003070 221 LMATASYQTYMKCQMRQPPLEIQWAL-QAVSIPSGG 255 (850)
Q Consensus 221 lIGatT~eeY~K~iekdPaLEr~W~L-Q~V~Vps~~ 255 (850)
+||||.... .-+|++-+.++| ..+.++.|+
T Consensus 154 vi~ttn~~~-----~ld~~l~r~~Rf~~~i~i~~p~ 184 (268)
T 2r62_A 154 VLAATNRPE-----ILDPALMRPGRFDRQVLVDKPD 184 (268)
T ss_dssp EEECBSCCT-----TSCGGGGSSSSSCCCCBCCCCC
T ss_pred EEEecCCch-----hcCHhHcCCCCCCeEEEecCcC
Confidence 999987653 256888884444 345555544
No 119
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.72 E-value=6.5e-05 Score=85.51 Aligned_cols=134 Identities=7% Similarity=0.036 Sum_probs=84.1
Q ss_pred CcHHHH---HHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHH
Q 003070 70 VSKEDI---KLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMN 146 (850)
Q Consensus 70 gRdeei---rrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~R 146 (850)
|.+.-+ +.+...+...+-.+.+|.|+||+|||.+++.++... +..++.+... +..-+++.+.
T Consensus 30 Gq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~----------~~~f~~l~a~-----~~~~~~ir~~ 94 (447)
T 3pvs_A 30 GQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA----------NADVERISAV-----TSGVKEIREA 94 (447)
T ss_dssp SCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT----------TCEEEEEETT-----TCCHHHHHHH
T ss_pred CcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEEec-----cCCHHHHHHH
Confidence 666666 566666766666788999999999999999998875 3456665432 2233444444
Q ss_pred HHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEeccc
Q 003070 147 LTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATAS 226 (850)
Q Consensus 147 lkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT 226 (850)
+........ .+.+.||||||+|.+-... .+ .||+ .+ ..|.+.+||+||
T Consensus 95 ~~~a~~~~~----~~~~~iLfIDEI~~l~~~~---------------q~----------~LL~-~l--e~~~v~lI~att 142 (447)
T 3pvs_A 95 IERARQNRN----AGRRTILFVDEVHRFNKSQ---------------QD----------AFLP-HI--EDGTITFIGATT 142 (447)
T ss_dssp HHHHHHHHH----TTCCEEEEEETTTCC-------------------------------CCHH-HH--HTTSCEEEEEES
T ss_pred HHHHHHhhh----cCCCcEEEEeChhhhCHHH---------------HH----------HHHH-HH--hcCceEEEecCC
Confidence 444433322 2568999999999884321 11 2443 22 247899999987
Q ss_pred HHHHHhhhhcCCcccccccceeeecCCCC
Q 003070 227 YQTYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 227 ~eeY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
..-+ ..-+++|-+| ++.+.++.++
T Consensus 143 ~n~~---~~l~~aL~sR--~~v~~l~~l~ 166 (447)
T 3pvs_A 143 ENPS---FELNSALLSR--ARVYLLKSLS 166 (447)
T ss_dssp SCGG---GSSCHHHHTT--EEEEECCCCC
T ss_pred CCcc---cccCHHHhCc--eeEEeeCCcC
Confidence 6544 2445777775 4555555433
No 120
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.68 E-value=5.4e-05 Score=81.07 Aligned_cols=138 Identities=11% Similarity=0.016 Sum_probs=75.9
Q ss_pred CeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeEEEe
Q 003070 89 NTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYT 168 (850)
Q Consensus 89 NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfI 168 (850)
..+|.|+||+|||.+++.+|... |..++.++.+.+ ....-|+.+.+++++.....+.+....+.||||
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l----------~~~~i~v~~~~l--~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~i 105 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM----------GINPIMMSAGEL--ESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFI 105 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH----------TCCCEEEEHHHH--HCC---HHHHHHHHHHHHHHHHHTTSSCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeHHHh--hhccCchhHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 44666999999999999999887 567888887754 334467888888888777632111256899999
Q ss_pred cchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccc---------cCCCCCeEEEEecccHHHHHhhhhcCCc
Q 003070 169 GDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDC---------NSASSTRVWLMATASYQTYMKCQMRQPP 239 (850)
Q Consensus 169 dELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~---------l~~arG~lwlIGatT~eeY~K~iekdPa 239 (850)
|||+.+.+...... .+ ...-..++..+-++|.+. ......++.+|+||... -.-+|+
T Consensus 106 DEiD~~~~~~~~~~-----~~----~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~-----~~ld~a 171 (293)
T 3t15_A 106 NDLDAGAGRMGGTT-----QY----TVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDF-----STLYAP 171 (293)
T ss_dssp ECCC-----------------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSC-----CC--CH
T ss_pred echhhhcCCCCCCc-----cc----cchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCc-----ccCCHH
Confidence 99999877331100 00 001122334455555311 00123568899998632 135778
Q ss_pred cccccccee-eecC
Q 003070 240 LEIQWALQA-VSIP 252 (850)
Q Consensus 240 LEr~W~LQ~-V~Vp 252 (850)
|-|.-+|.. +.+|
T Consensus 172 l~R~~R~d~~i~~P 185 (293)
T 3t15_A 172 LIRDGRMEKFYWAP 185 (293)
T ss_dssp HHHHHHEEEEEECC
T ss_pred HhCCCCCceeEeCc
Confidence 876333332 3445
No 121
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.67 E-value=0.00012 Score=79.88 Aligned_cols=153 Identities=9% Similarity=0.038 Sum_probs=89.0
Q ss_pred CCCcHHHHHHHHHHHhc----CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCC-CcccCCcEEEEeecccccccccChhH
Q 003070 68 ASVSKEDIKLVFEVFLR----KKRRNTVIVGDCLSITDALVFDFMGRVERGDV-PQELKQTHVIKFHFAPVTLRFMKKEE 142 (850)
Q Consensus 68 ~~gRdeeirrVieIL~R----r~K~NPVLVGe~gvgktAvVegla~rI~~G~V-P~~Lkg~~visLdl~~l~~~~~~Rge 142 (850)
..||+++++++.+.|.+ +..++.+|.|++|+|||.+++.+++.+..... ...+.+..++.++.... .+....-
T Consensus 22 l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~ 99 (384)
T 2qby_B 22 IPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREV--GGTPQAV 99 (384)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHH--CSCHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccC--CCCHHHH
Confidence 34899999999988865 23457889999999999999999998754200 00111567777764321 1000110
Q ss_pred -------------------HHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHH
Q 003070 143 -------------------VEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSE 203 (850)
Q Consensus 143 -------------------fE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~E 203 (850)
....+..+...++. .+ .||+|||+|++..... .+. -
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~----~~-~vlilDEi~~l~~~~~--------------~~~------~ 154 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN----IR-AIIYLDEVDTLVKRRG--------------GDI------V 154 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS----SC-EEEEEETTHHHHHSTT--------------SHH------H
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc----CC-CEEEEECHHHhccCCC--------------Cce------e
Confidence 11223333333332 23 3999999999976421 011 0
Q ss_pred hhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccccccceeeecCCCC
Q 003070 204 VGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 204 l~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
+..|+.- . ..+.+|++|+...++. .-+|.+-+++.. .+.+|..+
T Consensus 155 l~~l~~~----~-~~~~iI~~t~~~~~~~--~l~~~l~sr~~~-~i~l~~l~ 198 (384)
T 2qby_B 155 LYQLLRS----D-ANISVIMISNDINVRD--YMEPRVLSSLGP-SVIFKPYD 198 (384)
T ss_dssp HHHHHTS----S-SCEEEEEECSSTTTTT--TSCHHHHHTCCC-EEEECCCC
T ss_pred HHHHhcC----C-cceEEEEEECCCchHh--hhCHHHHhcCCC-eEEECCCC
Confidence 2344432 1 5699999987654332 235666665533 56666544
No 122
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.60 E-value=0.00019 Score=70.73 Aligned_cols=97 Identities=12% Similarity=0.021 Sum_probs=64.9
Q ss_pred CCcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHH
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLT 148 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rlk 148 (850)
.||++.++++.+.+.+.+..+.+|.|++|+|||.+++.+++.+... ..+..++.++.+.. .....+...+.
T Consensus 20 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~-----~~~~~~~~~~~~~~----~~~~~~~~~~~ 90 (226)
T 2chg_A 20 VGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE-----NWRDNFIEMNASDE----RGIDVVRHKIK 90 (226)
T ss_dssp CSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGG-----GGGGGEEEEETTCT----TCHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcc-----ccccceEEeccccc----cChHHHHHHHH
Confidence 3899999999999998777789999999999999999999987542 12234555553311 12333333333
Q ss_pred HHHHHHhccccCCCCeEEEecchhhhhc
Q 003070 149 ELKRKVDSLTSVGGGAIIYTGDLKWTVD 176 (850)
Q Consensus 149 eL~~~V~~~~~~~~gvILfIdELh~lvg 176 (850)
.+..... ...+.+.||+|||++++-.
T Consensus 91 ~~~~~~~--~~~~~~~vliiDe~~~l~~ 116 (226)
T 2chg_A 91 EFARTAP--IGGAPFKIIFLDEADALTA 116 (226)
T ss_dssp HHHTSCC--STTCSCEEEEEETGGGSCH
T ss_pred HHhcccC--CCccCceEEEEeChhhcCH
Confidence 3322110 0125689999999999743
No 123
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.58 E-value=6e-05 Score=86.05 Aligned_cols=123 Identities=8% Similarity=0.121 Sum_probs=82.4
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHhhh-CCCCeEEEEecCCchHHHHHHHHH-HHHhcCCCCceEEecCcc-----
Q 003070 475 RSDLYKVLQENVPWQFDSIHSIVEVLVECKS-AKKATWFLLQGNDTIGKRRLALSI-AESVFGSTDLLFHIDMRK----- 547 (850)
Q Consensus 475 l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~-gk~~~~~lf~Gp~gvGKt~lA~~L-A~~lfgs~~~~i~idms~----- 547 (850)
+..|.+.+.. |.||+++-.+|.-++.-.-. -+.+.-+|+.|++|+ ||.||+++ +.++- ...++...++.
T Consensus 205 ~~~l~~sIap-I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~p--R~~ft~g~~ss~~gLt 280 (506)
T 3f8t_A 205 LTTFARAIAP-LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAP--RGVYVDLRRTELTDLT 280 (506)
T ss_dssp HHHHHHHHCC-STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCS--SEEEEEGGGCCHHHHS
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCC--CeEEecCCCCCccCce
Confidence 5677888999 99999976666555542100 134568999999999 99999999 77651 11122111111
Q ss_pred ---ccCCCCCc---hhhHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccC--------ceEEEEecCC
Q 003070 548 ---RNDGVSSH---SEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFG--------KVIFVLTKGD 607 (850)
Q Consensus 548 ---~~~~~~~~---~~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~--------n~Iii~Tsn~ 607 (850)
++. .|+ .|.|.-| -.-|+|+|||.++.+.++..|+++||+|.++ ++.||.|+|.
T Consensus 281 ~s~r~~--tG~~~~~G~l~LA----dgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP 348 (506)
T 3f8t_A 281 AVLKED--RGWALRAGAAVLA----DGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINP 348 (506)
T ss_dssp EEEEES--SSEEEEECHHHHT----TTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECC
T ss_pred EEEEcC--CCcccCCCeeEEc----CCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCc
Confidence 111 111 1222211 2369999999999999999999999999853 6778888883
No 124
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.55 E-value=9.1e-05 Score=80.77 Aligned_cols=157 Identities=10% Similarity=0.028 Sum_probs=92.8
Q ss_pred CCcHHHHHHHHHHHhc----CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccc-c---------
Q 003070 69 SVSKEDIKLVFEVFLR----KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPV-T--------- 134 (850)
Q Consensus 69 ~gRdeeirrVieIL~R----r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l-~--------- 134 (850)
.+||+|++++...|.+ .+.+|.+|.|.||+|||++|+.++..+..-.--..+.+..++.++=..+ +
T Consensus 23 ~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~ 102 (318)
T 3te6_A 23 KSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIW 102 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHH
Confidence 3799999999987765 3667889999999999999999999987531111233456666651100 0
Q ss_pred --cccc--ChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcc-
Q 003070 135 --LRFM--KKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVS- 209 (850)
Q Consensus 135 --~~~~--~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLk- 209 (850)
+.+- ..++..+.|..+...+.. ..+..+|++|||++.|.+ . +.. -+|+.
T Consensus 103 ~~L~g~~~~~~~~~~~L~~~f~~~~~--~~~~~~ii~lDE~d~l~~-q----------------~~L-------~~l~~~ 156 (318)
T 3te6_A 103 FAISKENLCGDISLEALNFYITNVPK--AKKRKTLILIQNPENLLS-E----------------KIL-------QYFEKW 156 (318)
T ss_dssp HHHSCCC--CCCCHHHHHHHHHHSCG--GGSCEEEEEEECCSSSCC-T----------------HHH-------HHHHHH
T ss_pred HHhcCCCCCchHHHHHHHHHHHHhhh--ccCCceEEEEecHHHhhc-c----------------hHH-------HHHHhc
Confidence 0111 122334445555554411 125679999999999981 1 232 23332
Q ss_pred cccCCCCCeEEEEecc-cHHHHHhhhhcCCcccccccceeeecCCCC
Q 003070 210 DCNSASSTRVWLMATA-SYQTYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 210 p~l~~arG~lwlIGat-T~eeY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
+.. ..+++-+||++ |.+--. ...+|++..|+..+.+..+..+
T Consensus 157 ~~~--~~s~~~vI~i~n~~d~~~--~~L~~~v~SR~~~~~i~F~pYt 199 (318)
T 3te6_A 157 ISS--KNSKLSIICVGGHNVTIR--EQINIMPSLKAHFTEIKLNKVD 199 (318)
T ss_dssp HHC--SSCCEEEEEECCSSCCCH--HHHHTCHHHHTTEEEEECCCCC
T ss_pred ccc--cCCcEEEEEEecCcccch--hhcchhhhccCCceEEEeCCCC
Confidence 111 24678888864 332101 1235677777665667666554
No 125
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.55 E-value=0.00045 Score=75.83 Aligned_cols=106 Identities=9% Similarity=0.035 Sum_probs=62.1
Q ss_pred CCCcHHHHHHHHHHH-hc---C---CCCCeEE--EcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeeccccc----
Q 003070 68 ASVSKEDIKLVFEVF-LR---K---KRRNTVI--VGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVT---- 134 (850)
Q Consensus 68 ~~gRdeeirrVieIL-~R---r---~K~NPVL--VGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~---- 134 (850)
..||++|++++.+.| .+ . +.++.+| .|++|+|||.+++.+++.+.... +..=.+..++.++.....
T Consensus 24 l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 102 (412)
T 1w5s_A 24 LRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAA-AKEGLTVKQAYVNAFNAPNLYT 102 (412)
T ss_dssp CSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHH-HHTTCCEEEEEEEGGGCCSHHH
T ss_pred CCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHH-hccCCceeEEEEECCCCCCHHH
Confidence 348999999999998 42 2 3345555 69999999999999998876410 000013445555531100
Q ss_pred --------ccc--cChh-HHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcC
Q 003070 135 --------LRF--MKKE-EVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQ 177 (850)
Q Consensus 135 --------~~~--~~Rg-efE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvga 177 (850)
++. ..++ ..++-+..|...+.. .+..+||+|||+||+...
T Consensus 103 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~llvlDe~~~l~~~ 153 (412)
T 1w5s_A 103 ILSLIVRQTGYPIQVRGAPALDILKALVDNLYV---ENHYLLVILDEFQSMLSS 153 (412)
T ss_dssp HHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHH---HTCEEEEEEESTHHHHSC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHh---cCCeEEEEEeCHHHHhhc
Confidence 000 0001 112223334444432 256899999999999764
No 126
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.50 E-value=0.00023 Score=76.64 Aligned_cols=83 Identities=7% Similarity=0.004 Sum_probs=57.8
Q ss_pred CCcHHHHHHHHHHHhc-----CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHH
Q 003070 69 SVSKEDIKLVFEVFLR-----KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEV 143 (850)
Q Consensus 69 ~gRdeeirrVieIL~R-----r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~Rgef 143 (850)
-|+++.++.+.+.+.+ +.-++.+|.|++|+|||.+++.++.+. +..++.++.+.+ ...+++
T Consensus 32 iG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~----------~~~~~~~~~~~~----~~~~~~ 97 (338)
T 3pfi_A 32 IGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM----------SANIKTTAAPMI----EKSGDL 97 (338)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT----------TCCEEEEEGGGC----CSHHHH
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh----------CCCeEEecchhc----cchhHH
Confidence 3788888888877764 234688899999999999999998874 334666665432 123444
Q ss_pred HHHHHHHHHHHhccccCCCCeEEEecchhhhh
Q 003070 144 EMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175 (850)
Q Consensus 144 E~RlkeL~~~V~~~~~~~~gvILfIdELh~lv 175 (850)
... +.. ...+.||||||++.+-
T Consensus 98 ~~~-------~~~---~~~~~vl~lDEi~~l~ 119 (338)
T 3pfi_A 98 AAI-------LTN---LSEGDILFIDEIHRLS 119 (338)
T ss_dssp HHH-------HHT---CCTTCEEEEETGGGCC
T ss_pred HHH-------HHh---ccCCCEEEEechhhcC
Confidence 332 222 2457899999999874
No 127
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.43 E-value=0.0002 Score=81.35 Aligned_cols=98 Identities=14% Similarity=0.131 Sum_probs=66.1
Q ss_pred CcHHHHHH---HHHHHhcC--CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHH
Q 003070 70 VSKEDIKL---VFEVFLRK--KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVE 144 (850)
Q Consensus 70 gRdeeirr---VieIL~Rr--~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE 144 (850)
|.++..+. +++.+... ..++.+|.|+||+|||.+++.+|..+.. +..++.++-+.+ ....-|+.|
T Consensus 41 G~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~--------~~~~~~~~~~~~--~~~~~~~~~ 110 (456)
T 2c9o_A 41 GQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS--------KVPFCPMVGSEV--YSTEIKKTE 110 (456)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT--------TSCEEEEEGGGG--CCSSSCHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC--------CceEEEEeHHHH--HHHhhhhhH
Confidence 56655443 44444333 2368999999999999999999998632 267888886643 344567777
Q ss_pred HHHHHHHHHHhccccCCCCeEEEecchhhhhcCCc
Q 003070 145 MNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQE 179 (850)
Q Consensus 145 ~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~ 179 (850)
. +.++.+..... ....+.||||||+..+.+...
T Consensus 111 ~-~~~~f~~a~~~-~~~~~~il~iDEid~l~~~r~ 143 (456)
T 2c9o_A 111 V-LMENFRRAIGL-RIKETKEVYEGEVTELTPCET 143 (456)
T ss_dssp H-HHHHHHHTEEE-EEEEEEEEEEEEEEEEEEC--
T ss_pred H-HHHHHHHHHhh-hhcCCcEEEEechhhcccccC
Confidence 5 77776665110 114578999999999998653
No 128
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.36 E-value=0.00038 Score=74.34 Aligned_cols=109 Identities=15% Similarity=0.196 Sum_probs=71.7
Q ss_pred cCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcccc------C--------
Q 003070 485 NVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRN------D-------- 550 (850)
Q Consensus 485 ~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~------~-------- 550 (850)
.++|.++.+..+.+.+.. | ..+++.||.|+|||.|++.+++.+ + .+.+|+.... .
T Consensus 13 ~~~gR~~el~~L~~~l~~---~---~~v~i~G~~G~GKT~Ll~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (350)
T 2qen_A 13 DIFDREEESRKLEESLEN---Y---PLTLLLGIRRVGKSSLLRAFLNER-P----GILIDCRELYAERGHITREELIKEL 81 (350)
T ss_dssp GSCSCHHHHHHHHHHHHH---C---SEEEEECCTTSSHHHHHHHHHHHS-S----EEEEEHHHHHHTTTCBCHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHhc---C---CeEEEECCCcCCHHHHHHHHHHHc-C----cEEEEeecccccccCCCHHHHHHHH
Confidence 356666667777666653 3 588999999999999999999875 2 5666654211 0
Q ss_pred -----C------------------CC---CchhhHHHHh----hhCCCEEEeeccccccC-------HHHHHHHHhhhcc
Q 003070 551 -----G------------------VS---SHSEMLMGTL----KNYEKLVVLVEDIDLAD-------PQFIKILADGFET 593 (850)
Q Consensus 551 -----~------------------~~---~~~~~l~e~v----r~~P~sVvlldeiekA~-------~~v~~~l~q~~d~ 593 (850)
. .+ .-...+.+.+ +++...||+|||++.++ +.+...|...++.
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~ 161 (350)
T 2qen_A 82 QSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS 161 (350)
T ss_dssp HHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh
Confidence 0 00 0112233333 22214699999999965 5888888888776
Q ss_pred CccCceEEEEecC
Q 003070 594 ENFGKVIFVLTKG 606 (850)
Q Consensus 594 G~l~n~Iii~Tsn 606 (850)
. .+..||+|++
T Consensus 162 ~--~~~~~il~g~ 172 (350)
T 2qen_A 162 L--PNLKIILTGS 172 (350)
T ss_dssp C--TTEEEEEEES
T ss_pred c--CCeEEEEECC
Confidence 4 5788888865
No 129
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.36 E-value=0.00073 Score=72.37 Aligned_cols=137 Identities=10% Similarity=0.053 Sum_probs=87.4
Q ss_pred CCcHHHHHHHHHHHhcCCCCCeEEEcC-CCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHH
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNTVIVGD-CLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNL 147 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NPVLVGe-~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rl 147 (850)
.|.++.++.+.+.+.+.+..|++|+|- ||+|||.+++.+++.+ +..++.++-+.. ...++...+
T Consensus 29 vg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l----------~~~~~~i~~~~~-----~~~~i~~~~ 93 (324)
T 3u61_B 29 ILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV----------NADMMFVNGSDC-----KIDFVRGPL 93 (324)
T ss_dssp CCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT----------TEEEEEEETTTC-----CHHHHHTHH
T ss_pred hCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CCCEEEEccccc-----CHHHHHHHH
Confidence 488888998988888777778888755 9999999999998876 356777764321 133333333
Q ss_pred HHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccH
Q 003070 148 TELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASY 227 (850)
Q Consensus 148 keL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~ 227 (850)
++.. ....-.+.+-||+|||+|.+-+.. +. ..+-+++... .+.+.+|++|++
T Consensus 94 ~~~~---~~~~~~~~~~vliiDEi~~l~~~~-----------------~~----~~L~~~le~~----~~~~~iI~~~n~ 145 (324)
T 3u61_B 94 TNFA---SAASFDGRQKVIVIDEFDRSGLAE-----------------SQ----RHLRSFMEAY----SSNCSIIITANN 145 (324)
T ss_dssp HHHH---HBCCCSSCEEEEEEESCCCGGGHH-----------------HH----HHHHHHHHHH----GGGCEEEEEESS
T ss_pred HHHH---hhcccCCCCeEEEEECCcccCcHH-----------------HH----HHHHHHHHhC----CCCcEEEEEeCC
Confidence 3322 211112467999999999985211 11 1133444422 246788888765
Q ss_pred HHHHhhhhcCCcccccccceeeecCCCC
Q 003070 228 QTYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 228 eeY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
.. .-+|+|-+|+ +.+.++.++
T Consensus 146 ~~-----~l~~~l~sR~--~~i~~~~~~ 166 (324)
T 3u61_B 146 ID-----GIIKPLQSRC--RVITFGQPT 166 (324)
T ss_dssp GG-----GSCTTHHHHS--EEEECCCCC
T ss_pred cc-----ccCHHHHhhC--cEEEeCCCC
Confidence 32 3568888864 667776655
No 130
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.34 E-value=0.0021 Score=69.61 Aligned_cols=93 Identities=11% Similarity=0.118 Sum_probs=67.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCC--C-ceEEecCccccCCCCCchhhHHHHhhhCC----CEEEeeccccc-
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGST--D-LLFHIDMRKRNDGVSSHSEMLMGTLKNYE----KLVVLVEDIDL- 578 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~--~-~~i~idms~~~~~~~~~~~~l~e~vr~~P----~sVvlldeiek- 578 (850)
+-.-.+||.||+|.||++.+++|+..++... + ..+.+| .. .-+..|.+.++..| +.||++||+++
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~------~~~~~l~~~~~~~plf~~~kvvii~~~~~k 88 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-PN------TDWNAIFSLCQAMSLFASRQTLLLLLPENG 88 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-TT------CCHHHHHHHHHHHHHCCSCEEEEEECCSSC
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-CC------CCHHHHHHHhcCcCCccCCeEEEEECCCCC
Confidence 3345788999999999999999999887321 2 234444 11 12456666666544 78999999998
Q ss_pred cCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 579 ADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 579 A~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
-....++.|+..+++= -.+++||++++.
T Consensus 89 l~~~~~~aLl~~le~p-~~~~~~il~~~~ 116 (343)
T 1jr3_D 89 PNAAINEQLLTLTGLL-HDDLLLIVRGNK 116 (343)
T ss_dssp CCTTHHHHHHHHHTTC-BTTEEEEEEESC
T ss_pred CChHHHHHHHHHHhcC-CCCeEEEEEcCC
Confidence 7888999999999862 248888887753
No 131
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.29 E-value=0.00057 Score=75.57 Aligned_cols=93 Identities=18% Similarity=0.197 Sum_probs=68.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCC-CCceEEe-cCccccC--------------CCCCchhhHHHHhhhCCCEE
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGS-TDLLFHI-DMRKRND--------------GVSSHSEMLMGTLKNYEKLV 570 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs-~~~~i~i-dms~~~~--------------~~~~~~~~l~e~vr~~P~sV 570 (850)
.+.+.+++.||+|+|||++.++|+.++--. ...++.+ |.-++.- ...+|.+.|..+++.+|- |
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pd-v 199 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPD-I 199 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCS-E
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcC-E
Confidence 455799999999999999999999888533 3344433 3333310 112345579999999997 9
Q ss_pred EeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 571 VLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 571 vlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
|||||+- |++....++++.++|+. +|+|+-
T Consensus 200 illDEp~--d~e~~~~~~~~~~~G~~----vl~t~H 229 (356)
T 3jvv_A 200 ILVGEMR--DLETIRLALTAAETGHL----VFGTLH 229 (356)
T ss_dssp EEESCCC--SHHHHHHHHHHHHTTCE----EEEEES
T ss_pred EecCCCC--CHHHHHHHHHHHhcCCE----EEEEEc
Confidence 9999997 89999999999888864 455554
No 132
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.24 E-value=0.0003 Score=67.06 Aligned_cols=82 Identities=6% Similarity=-0.115 Sum_probs=54.3
Q ss_pred CcHHHHHHHHHHHhc--CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHH
Q 003070 70 VSKEDIKLVFEVFLR--KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNL 147 (850)
Q Consensus 70 gRdeeirrVieIL~R--r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rl 147 (850)
|+++.++++.+.+.+ +...|.+|.|++|+|||.+++.++....+.. ..++ ++.+.+.-. .
T Consensus 5 G~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~-------~~~v-~~~~~~~~~-~--------- 66 (145)
T 3n70_A 5 GRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQ-------GEFV-YRELTPDNA-P--------- 66 (145)
T ss_dssp CSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTT-------SCCE-EEECCTTTS-S---------
T ss_pred eCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccC-------CCEE-EECCCCCcc-h---------
Confidence 677888888877754 5777899999999999999999987654433 3356 665543211 1
Q ss_pred HHHHHHHhccccCCCCeEEEecchhhh
Q 003070 148 TELKRKVDSLTSVGGGAIIYTGDLKWT 174 (850)
Q Consensus 148 keL~~~V~~~~~~~~gvILfIdELh~l 174 (850)
.+...++.. . +-+|||||++.+
T Consensus 67 -~~~~~~~~a---~-~g~l~ldei~~l 88 (145)
T 3n70_A 67 -QLNDFIALA---Q-GGTLVLSHPEHL 88 (145)
T ss_dssp -CHHHHHHHH---T-TSCEEEECGGGS
T ss_pred -hhhcHHHHc---C-CcEEEEcChHHC
Confidence 111122221 2 347899999977
No 133
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.22 E-value=0.0015 Score=75.41 Aligned_cols=137 Identities=12% Similarity=0.099 Sum_probs=80.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeEEE
Q 003070 88 RNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIY 167 (850)
Q Consensus 88 ~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvILf 167 (850)
++.+|+|+||+|||-+++.++..+. ..++.++-+.+ ..+..++.+.++..+.+.... ..+.|+|
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~----------~~~i~i~g~~~--~~~~~g~~~~~v~~lfq~a~~----~~p~il~ 128 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEAR----------VPFITASGSDF--VEMFVGVGAARVRDLFETAKR----HAPCIVF 128 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTT----------CCEEEEEGGGG--TSSCTTHHHHHHHHHTTTSSS----SSSCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC----------CCEEEEehhHH--HHhhhhhHHHHHHHHHHHHHh----cCCCEEE
Confidence 4579999999999999999987652 34677765433 334456666676666554432 2357999
Q ss_pred ecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccc--ccc
Q 003070 168 TGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEI--QWA 245 (850)
Q Consensus 168 IdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr--~W~ 245 (850)
||||+.+........ ++ ..+..++.+..+-..|... + ....+-+|++|..-.. -||+|-| ||+
T Consensus 129 IDEId~l~~~r~~~~-----~~---~~~e~~~~l~~LL~~Ldg~-~-~~~~viviAatn~p~~-----LD~aLlr~gRfd 193 (499)
T 2dhr_A 129 IDEIDAVGRKRGSGV-----GG---GNDEREQTLNQLLVEMDGF-E-KDTAIVVMAATNRPDI-----LDPALLRPGRFD 193 (499)
T ss_dssp EECGGGTCCCSSSST-----TT---SSHHHHHHHHHHHHHGGGC-C-SSCCCEEEECCSCGGG-----SCTTTSSTTSSC
T ss_pred EehHHHHHHhhccCc-----CC---CcHHHHHHHHHHHHHhccc-c-cCccEEEEEecCChhh-----cCcccccccccc
Confidence 999998865432100 00 0112233333333333321 1 1233666777654422 6899988 666
Q ss_pred ceeeecCCCCc
Q 003070 246 LQAVSIPSGGL 256 (850)
Q Consensus 246 LQ~V~Vps~~~ 256 (850)
. .|.|+-|..
T Consensus 194 r-~i~i~~Pd~ 203 (499)
T 2dhr_A 194 R-QIAIDAPDV 203 (499)
T ss_dssp C-EEECCCCCH
T ss_pred e-EEecCCCCH
Confidence 4 566666653
No 134
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.19 E-value=0.0014 Score=65.14 Aligned_cols=45 Identities=2% Similarity=-0.133 Sum_probs=38.3
Q ss_pred CCcHHHHHHHHHHHhcCCCC-CeEEEcCCCchHHHHHHHHHHhHHh
Q 003070 69 SVSKEDIKLVFEVFLRKKRR-NTVIVGDCLSITDALVFDFMGRVER 113 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~-NPVLVGe~gvgktAvVegla~rI~~ 113 (850)
.||+++++++.+.|.+.+.. +.+|.|++|+|||.+++.+++.+..
T Consensus 26 ~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 26 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred hCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 48999999999999875433 4688999999999999999998764
No 135
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.15 E-value=0.0011 Score=70.90 Aligned_cols=92 Identities=12% Similarity=0.200 Sum_probs=62.0
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcccc-----C---------------------------C------
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRN-----D---------------------------G------ 551 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~-----~---------------------------~------ 551 (850)
..+++.||.|+|||.|++++++.+- ...+.+++..++ . .
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~ 107 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN---LPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVI 107 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT---CCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC---CCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEe
Confidence 3888999999999999999998862 235677765421 0 0
Q ss_pred ------------CCCchhhHHHHhhhC--CCEEEeeccccccC----HHHHHHHHhhhccCccCceEEEEecC
Q 003070 552 ------------VSSHSEMLMGTLKNY--EKLVVLVEDIDLAD----PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 552 ------------~~~~~~~l~e~vr~~--P~sVvlldeiekA~----~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.......+.+.+++. ...||+|||++.++ +.+...|...++.. .+..||+|++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~~g~ 178 (357)
T 2fna_A 108 MGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNL--KRIKFIMSGS 178 (357)
T ss_dssp CSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC--TTEEEEEEES
T ss_pred cceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHHHHcC--CCeEEEEEcC
Confidence 011223455666553 14599999999975 45677776666653 4677888776
No 136
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.08 E-value=0.0021 Score=68.57 Aligned_cols=39 Identities=8% Similarity=0.005 Sum_probs=35.1
Q ss_pred CCcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhH
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRV 111 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI 111 (850)
-||++|++++.+ |.+ ++.+|.|++|+|||.++..++.+.
T Consensus 16 ~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 16 FDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp CCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999 765 688999999999999999999875
No 137
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.08 E-value=0.0025 Score=67.59 Aligned_cols=134 Identities=10% Similarity=0.098 Sum_probs=81.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeEE
Q 003070 87 RRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAII 166 (850)
Q Consensus 87 K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvIL 166 (850)
.+..+|+|+||+|||-+++.++..+. ..++.++-..+ .....++.+.++..+....+. ..+.|+
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~~~----------~~~i~i~g~~l--~~~~~~~~~~~i~~vf~~a~~----~~p~i~ 107 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANESG----------LNFISVKGPEL--LNMYVGESERAVRQVFQRAKN----SAPCVI 107 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTT----------CEEEEEETTTT--CSSTTHHHHHHHHHHHHHHHH----TCSEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHcC----------CCEEEEEcHHH--HhhhhhHHHHHHHHHHHHHHh----cCCCeE
Confidence 44589999999999999999887532 24677664432 334578888888888887654 347899
Q ss_pred EecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccc--cc
Q 003070 167 YTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEI--QW 244 (850)
Q Consensus 167 fIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr--~W 244 (850)
|+||+..+....... . .+....++..+-.-|... + .+..+-++++|..-.. -||++-| ||
T Consensus 108 ~~Deid~~~~~r~~~-------~----~~~~~~~~~~~l~~Lsgg-~-~~~~~i~ia~tn~p~~-----LD~al~r~gRf 169 (274)
T 2x8a_A 108 FFDEVDALCPRRSDR-------E----TGASVRVVNQLLTEMDGL-E-ARQQVFIMAATNRPDI-----IDPAILRPGRL 169 (274)
T ss_dssp EEETCTTTCC--------------------CTTHHHHHHHHHHTC-C-STTCEEEEEEESCGGG-----SCHHHHSTTSS
T ss_pred eeehhhhhhcccCCC-------c----chHHHHHHHHHHHhhhcc-c-ccCCEEEEeecCChhh-----CCHhhcCcccC
Confidence 999999876532110 0 012222333333333321 1 2234667777654433 3999988 77
Q ss_pred cceeeecCCCC
Q 003070 245 ALQAVSIPSGG 255 (850)
Q Consensus 245 ~LQ~V~Vps~~ 255 (850)
+ ..|.||-|.
T Consensus 170 d-~~i~~~~P~ 179 (274)
T 2x8a_A 170 D-KTLFVGLPP 179 (274)
T ss_dssp C-EEEECCSCC
T ss_pred C-eEEEeCCcC
Confidence 6 445565555
No 138
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.05 E-value=0.001 Score=70.97 Aligned_cols=41 Identities=15% Similarity=0.074 Sum_probs=36.6
Q ss_pred CCcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhH
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRV 111 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI 111 (850)
-||+++++++.+.|.+. +..+|.|++|+|||.+++.++++.
T Consensus 15 ~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~ 55 (350)
T 2qen_A 15 FDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER 55 (350)
T ss_dssp CSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc
Confidence 38999999999998763 789999999999999999998764
No 139
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.03 E-value=0.0018 Score=68.30 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=61.7
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCC-CCceEEec--CccccC-------------CCCCchhhHHHHhhhCCCEE
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGS-TDLLFHID--MRKRND-------------GVSSHSEMLMGTLKNYEKLV 570 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs-~~~~i~id--ms~~~~-------------~~~~~~~~l~e~vr~~P~sV 570 (850)
++...++++||+|+|||++.+.|+.++--. ...++-.+ ...... .+..|...|..+++.+|- |
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~-i 101 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPD-V 101 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCS-E
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCC-E
Confidence 456799999999999999999999987422 22322221 111100 112233468999999997 9
Q ss_pred EeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 571 VLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 571 vlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
+||||+- |+.....+++...+|. .+|+|+..
T Consensus 102 lllDEp~--D~~~~~~~l~~~~~g~----~vl~t~H~ 132 (261)
T 2eyu_A 102 IFVGEMR--DLETVETALRAAETGH----LVFGTLHT 132 (261)
T ss_dssp EEESCCC--SHHHHHHHHHHHHTTC----EEEEEECC
T ss_pred EEeCCCC--CHHHHHHHHHHHccCC----EEEEEeCc
Confidence 9999997 7766666666665554 34556653
No 140
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.02 E-value=0.00095 Score=73.38 Aligned_cols=82 Identities=15% Similarity=0.108 Sum_probs=48.1
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeE
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAI 165 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvI 165 (850)
...|.+|+|+||+|||.+++.+++.+ +..++.++.+.+.-.+....+.+..+..+............+-|
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v 140 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHL----------DIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGI 140 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHh----------CCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeE
Confidence 46789999999999999999999876 34677777664421111122233334444332211000124679
Q ss_pred EEecchhhhhcC
Q 003070 166 IYTGDLKWTVDQ 177 (850)
Q Consensus 166 LfIdELh~lvga 177 (850)
|||||++.+...
T Consensus 141 l~iDEi~~l~~~ 152 (376)
T 1um8_A 141 VFIDEIDKISRL 152 (376)
T ss_dssp EEEETGGGC---
T ss_pred EEEcCHHHHhhh
Confidence 999999999765
No 141
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.97 E-value=0.0026 Score=73.40 Aligned_cols=142 Identities=8% Similarity=0.034 Sum_probs=84.4
Q ss_pred CCcHHHHHHHHHHHhcC-----------------CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecc
Q 003070 69 SVSKEDIKLVFEVFLRK-----------------KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFA 131 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr-----------------~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~ 131 (850)
-|+++.++.+.+.|.+. ..++.+|.|+||+|||.+++.+++.+ |..++.++-+
T Consensus 42 iG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----------~~~~i~in~s 111 (516)
T 1sxj_A 42 CGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----------GYDILEQNAS 111 (516)
T ss_dssp CSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----------TCEEEEECTT
T ss_pred cCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEeCC
Confidence 48999999999988751 23678888999999999999999876 4677777654
Q ss_pred cccccccChhHHHHHHHHHHH------HHhcc----ccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhh
Q 003070 132 PVTLRFMKKEEVEMNLTELKR------KVDSL----TSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLV 201 (850)
Q Consensus 132 ~l~~~~~~RgefE~RlkeL~~------~V~~~----~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V 201 (850)
.+ .....++..++++.. ..... ...+.+.||+|||++.+.+... .. +
T Consensus 112 ~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~---------------~~----l 168 (516)
T 1sxj_A 112 DV----RSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR---------------GG----V 168 (516)
T ss_dssp SC----CCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST---------------TH----H
T ss_pred Cc----chHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH---------------HH----H
Confidence 32 112222222221110 00000 0124679999999999875321 12 2
Q ss_pred HHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccccccceeeecCCCC
Q 003070 202 SEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 202 ~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
..+-++++.. +..+-||+++++. ..-++|.++ .+.+.++.++
T Consensus 169 ~~L~~~l~~~----~~~iIli~~~~~~------~~l~~l~~r--~~~i~f~~~~ 210 (516)
T 1sxj_A 169 GQLAQFCRKT----STPLILICNERNL------PKMRPFDRV--CLDIQFRRPD 210 (516)
T ss_dssp HHHHHHHHHC----SSCEEEEESCTTS------STTGGGTTT--SEEEECCCCC
T ss_pred HHHHHHHHhc----CCCEEEEEcCCCC------ccchhhHhc--eEEEEeCCCC
Confidence 3355666542 3457777776531 122445443 3566666555
No 142
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.94 E-value=0.00074 Score=90.99 Aligned_cols=88 Identities=10% Similarity=0.139 Sum_probs=67.9
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchh-hHHHHhhhCCCEEEeeccccccCHHHHHHH---
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSE-MLMGTLKNYEKLVVLVEDIDLADPQFIKIL--- 587 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~-~l~e~vr~~P~sVvlldeiekA~~~v~~~l--- 587 (850)
.++.||+|+|||+++++||+.+ ...+++|++++.... ..++ .+.++++.. .+++||||++|+++|+..|
T Consensus 648 ~~l~GpaGtGKTe~vk~LA~~l---g~~~v~~nc~e~ld~--~~lg~~~~g~~~~G--aw~~~DE~nr~~~evLs~l~~~ 720 (2695)
T 4akg_A 648 GCFFGPAGTGKTETVKAFGQNL---GRVVVVFNCDDSFDY--QVLSRLLVGITQIG--AWGCFDEFNRLDEKVLSAVSAN 720 (2695)
T ss_dssp EEEECCTTSCHHHHHHHHHHTT---TCCCEEEETTSSCCH--HHHHHHHHHHHHHT--CEEEEETTTSSCHHHHHHHHHH
T ss_pred CcccCCCCCCcHHHHHHHHHHh---CCcEEEEECCCCCCh--hHhhHHHHHHHhcC--CEeeehhhhhcChHHHHHHHHH
Confidence 4578999999999999999998 578999999975321 1123 566665554 6999999999999999999
Q ss_pred ----HhhhccCc--c----------CceEEEEecC
Q 003070 588 ----ADGFETEN--F----------GKVIFVLTKG 606 (850)
Q Consensus 588 ----~q~~d~G~--l----------~n~Iii~Tsn 606 (850)
.+++.++. + .++.|+.|.|
T Consensus 721 l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~N 755 (2695)
T 4akg_A 721 IQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLN 755 (2695)
T ss_dssp HHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEEC
T ss_pred HHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeC
Confidence 44554444 1 2788899999
No 143
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.93 E-value=0.0005 Score=70.59 Aligned_cols=84 Identities=13% Similarity=0.193 Sum_probs=51.8
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhhhCCCEEEeeccccccCHHHHH-HHH
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIK-ILA 588 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~~P~sVvlldeiekA~~~v~~-~l~ 588 (850)
..++|.||.|+|||.+|.+||..+.|. .+.+.-+. ...+...+ .. +.||+|||++.+...... .+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~---i~~fans~----s~f~l~~l----~~--~kIiiLDEad~~~~~~~d~~lr 125 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGA---VISFVNST----SHFWLEPL----TD--TKVAMLDDATTTCWTYFDTYMR 125 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCE---ECCCCCSS----SCGGGGGG----TT--CSSEEEEEECHHHHHHHHHHCH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCC---eeeEEecc----chhhhccc----CC--CCEEEEECCCchhHHHHHHHHH
Confidence 468999999999999999999999663 33332211 01111222 11 459999999977544433 444
Q ss_pred hhhccCc------cC------ceEEEEecC
Q 003070 589 DGFETEN------FG------KVIFVLTKG 606 (850)
Q Consensus 589 q~~d~G~------l~------n~Iii~Tsn 606 (850)
.++|.-. .+ ..=+|+|||
T Consensus 126 n~ldG~~~~iD~Khr~~~~~~~~PlIITtN 155 (212)
T 1tue_A 126 NALDGNPISIDRKHKPLIQLKCPPILLTTN 155 (212)
T ss_dssp HHHHTCCEEEC----CCEEECCCCEEEEES
T ss_pred HHhCCCcccHHHhhcCccccCCCCEEEecC
Confidence 4544432 11 347888999
No 144
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.91 E-value=0.00079 Score=70.09 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=43.4
Q ss_pred CcHHHHHHHHHHHhc--CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccc
Q 003070 70 VSKEDIKLVFEVFLR--KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPV 133 (850)
Q Consensus 70 gRdeeirrVieIL~R--r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l 133 (850)
|++..++++++.+.+ +...+.+|.|++|+|||.+++.++....+. +..++.++.+.+
T Consensus 10 g~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~-------~~~~~~v~~~~~ 68 (265)
T 2bjv_A 10 GEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW-------QGPFISLNCAAL 68 (265)
T ss_dssp CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT-------TSCEEEEEGGGS
T ss_pred eCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc-------CCCeEEEecCCC
Confidence 677888888777654 466788899999999999999998875543 345778876643
No 145
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.88 E-value=0.0033 Score=64.94 Aligned_cols=138 Identities=10% Similarity=0.091 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeEE
Q 003070 87 RRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAII 166 (850)
Q Consensus 87 K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvIL 166 (850)
.++.+|+|++|+|||-+++.++..+. ..++.++-..+ .....++.+.++..+.+.... ....|+
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~~----------~~~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~----~~~~i~ 112 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEAR----------VPFITASGSDF--VEMFVGVGAARVRDLFETAKR----HAPCIV 112 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHTT----------CCEEEEEHHHH--HHSCTTHHHHHHHHHHHHHTT----SSSEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC----------CCEEEeeHHHH--HHHHhhHHHHHHHHHHHHHHh----cCCeEE
Confidence 34579999999999999999988653 23455553322 223345666677777766553 346899
Q ss_pred EecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHHHHHhhhhcCCcccc--cc
Q 003070 167 YTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQTYMKCQMRQPPLEI--QW 244 (850)
Q Consensus 167 fIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~eeY~K~iekdPaLEr--~W 244 (850)
+|||++.+........ ++ ......+.+.++-+.|... .+.++.++-++|..- -.-||++-| ||
T Consensus 113 ~~Deid~l~~~~~~~~-----~~---~~~~~~~~~~~ll~~l~g~---~~~~~~i~~a~t~~p----~~ld~~l~r~~rf 177 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGV-----GG---GNDEREQTLNQLLVEMDGF---EKDTAIVVMAATNRP----DILDPALLRPGRF 177 (254)
T ss_dssp EEETHHHHHC-----------------CHHHHHHHHHHHHHHHTC---CTTCCEEEEEEESCG----GGSCGGGGSTTSS
T ss_pred EehhhhhhhcccCccc-----cc---cchHHHHHHHHHHHHHhCC---CCCCCEEEEEccCCc----hhCCHHHcCCCcC
Confidence 9999998865332100 00 0112333444444444321 233444444444322 125899988 56
Q ss_pred cceeeecCCCCc
Q 003070 245 ALQAVSIPSGGL 256 (850)
Q Consensus 245 ~LQ~V~Vps~~~ 256 (850)
+. .+.++.|..
T Consensus 178 ~~-~i~i~~p~~ 188 (254)
T 1ixz_A 178 DR-QIAIDAPDV 188 (254)
T ss_dssp CE-EEECCSCCH
T ss_pred Ce-EEeeCCcCH
Confidence 43 566666553
No 146
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.87 E-value=0.0022 Score=68.31 Aligned_cols=84 Identities=7% Similarity=0.004 Sum_probs=56.4
Q ss_pred CCcHHHHHHHHHHHhc-----CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHH
Q 003070 69 SVSKEDIKLVFEVFLR-----KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEV 143 (850)
Q Consensus 69 ~gRdeeirrVieIL~R-----r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~Rgef 143 (850)
-|+++.++++.+.+.+ +..++.+|.|++|+|||.+++.++.... ..++.++.+.+ ...++
T Consensus 15 ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~----------~~~~~~~~~~~----~~~~~- 79 (324)
T 1hqc_A 15 IGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG----------VNLRVTSGPAI----EKPGD- 79 (324)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT----------CCEEEECTTTC----CSHHH-
T ss_pred hCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC----------CCEEEEecccc----CChHH-
Confidence 3788888887777753 3457899999999999999999998762 34555544322 11222
Q ss_pred HHHHHHHHHHHhccccCCCCeEEEecchhhhh
Q 003070 144 EMNLTELKRKVDSLTSVGGGAIIYTGDLKWTV 175 (850)
Q Consensus 144 E~RlkeL~~~V~~~~~~~~gvILfIdELh~lv 175 (850)
+...+... ...+.+|||||++.+-
T Consensus 80 ------l~~~l~~~--~~~~~~l~lDEi~~l~ 103 (324)
T 1hqc_A 80 ------LAAILANS--LEEGDILFIDEIHRLS 103 (324)
T ss_dssp ------HHHHHTTT--CCTTCEEEETTTTSCC
T ss_pred ------HHHHHHHh--ccCCCEEEEECCcccc
Confidence 23333321 1456799999999874
No 147
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.85 E-value=0.00055 Score=74.41 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=33.2
Q ss_pred CcHHHHHH---HHHHHhcCCC--CCeEEEcCCCchHHHHHHHHHHhHH
Q 003070 70 VSKEDIKL---VFEVFLRKKR--RNTVIVGDCLSITDALVFDFMGRVE 112 (850)
Q Consensus 70 gRdeeirr---VieIL~Rr~K--~NPVLVGe~gvgktAvVegla~rI~ 112 (850)
|+++..+. +.+.+..... ++.+|.|+||+|||.+++.+++.+.
T Consensus 48 G~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 48 GQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 67766554 5555555443 4889999999999999999999885
No 148
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.83 E-value=0.0012 Score=72.15 Aligned_cols=98 Identities=13% Similarity=0.067 Sum_probs=63.2
Q ss_pred CcHHHHHHHHHHHh-------------c--CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeeccccc
Q 003070 70 VSKEDIKLVFEVFL-------------R--KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVT 134 (850)
Q Consensus 70 gRdeeirrVieIL~-------------R--r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~ 134 (850)
|.++-++.+.+.+. + ...++.+|.|+||+|||.+++.+++.. +..++.++.+.+.
T Consensus 19 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~----------~~~~~~~~~~~l~ 88 (363)
T 3hws_A 19 GQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL----------DVPFTMADATTLT 88 (363)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEechHHhc
Confidence 66777777777662 1 146789999999999999999999876 4568888866442
Q ss_pred ccccChh-HHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCC
Q 003070 135 LRFMKKE-EVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQ 178 (850)
Q Consensus 135 ~~~~~Rg-efE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag 178 (850)
. ...-| +.+..+.++.....-......+-||||||++.+....
T Consensus 89 ~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~ 132 (363)
T 3hws_A 89 E-AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKS 132 (363)
T ss_dssp T-CHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCS
T ss_pred c-cccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccc
Confidence 1 11122 2344555555443100001235699999999987653
No 149
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.81 E-value=0.0015 Score=68.88 Aligned_cols=143 Identities=11% Similarity=0.066 Sum_probs=84.8
Q ss_pred CCcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHH
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLT 148 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rlk 148 (850)
.|+++.++.+.+.+.+++..+.+|.|++|+|||.+++.+++.+.... .+..++.++.+.. .+ ..++...++
T Consensus 20 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~--~~--~~~~~~~~~ 90 (319)
T 2chq_A 20 VGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-----WRDNFIEMNASDE--RG--IDVVRHKIK 90 (319)
T ss_dssp CSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC-----HHHHCEEEETTST--TC--TTTSSHHHH
T ss_pred hCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc-----ccCCeEEEeCccc--cC--hHHHHHHHH
Confidence 37888888888888776666789999999999999999999885321 1234555554321 11 122222333
Q ss_pred HHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCCCeEEEEecccHH
Q 003070 149 ELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASSTRVWLMATASYQ 228 (850)
Q Consensus 149 eL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~arG~lwlIGatT~e 228 (850)
++.... . ...+...|++|||+|.+-.. +. ..+-++|.. ....+.+|.+|+..
T Consensus 91 ~~~~~~-~-~~~~~~~vliiDe~~~l~~~------------------~~----~~L~~~le~----~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 91 EFARTA-P-IGGAPFKIIFLDEADALTAD------------------AQ----AALRRTMEM----YSKSCRFILSCNYV 142 (319)
T ss_dssp HHHHSC-C-SSSCCCEEEEEETGGGSCHH------------------HH----HTTGGGTSS----SSSSEEEEEEESCG
T ss_pred HHHhcC-C-CCCCCceEEEEeCCCcCCHH------------------HH----HHHHHHHHh----cCCCCeEEEEeCCh
Confidence 322111 0 11145799999999987431 11 112334432 23568888887542
Q ss_pred HHHhhhhcCCcccccccceeeecCCCC
Q 003070 229 TYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 229 eY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
. .-.|+|.+| ++.+.++.++
T Consensus 143 ~-----~l~~~l~sr--~~~i~~~~~~ 162 (319)
T 2chq_A 143 S-----RIIEPIQSR--CAVFRFKPVP 162 (319)
T ss_dssp G-----GSCHHHHTT--CEEEECCCCC
T ss_pred h-----hcchHHHhh--CeEEEecCCC
Confidence 2 335677775 3566665544
No 150
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.79 E-value=0.0025 Score=70.65 Aligned_cols=94 Identities=17% Similarity=0.206 Sum_probs=63.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCC-CCceEEecC-cccc-C-------------CCCCchhhHHHHhhhCCCEE
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGS-TDLLFHIDM-RKRN-D-------------GVSSHSEMLMGTLKNYEKLV 570 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs-~~~~i~idm-s~~~-~-------------~~~~~~~~l~e~vr~~P~sV 570 (850)
++.+.+++.||+|+|||++.++|+.++--. ...++.++- -++. . .+..+.+.|..+++.+|- +
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd-~ 212 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPD-V 212 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCS-E
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcC-E
Confidence 456789999999999999999999987533 334434431 1110 0 122345579999999986 9
Q ss_pred EeeccccccCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 571 VLVEDIDLADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 571 vlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
|++||+- |+.....++++...|.+ +|+|+..
T Consensus 213 illdE~~--d~e~~~~~l~~~~~g~~----vi~t~H~ 243 (372)
T 2ewv_A 213 IFVGEMR--DLETVETALRAAETGHL----VFGTLHT 243 (372)
T ss_dssp EEESCCC--SHHHHHHHHHHHTTTCE----EEECCCC
T ss_pred EEECCCC--CHHHHHHHHHHHhcCCE----EEEEECc
Confidence 9999997 56655555666666643 4666654
No 151
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.65 E-value=0.0051 Score=69.73 Aligned_cols=100 Identities=13% Similarity=0.186 Sum_probs=65.7
Q ss_pred CCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC-ceEEecCccc----c-C-CCCCchhhH
Q 003070 487 PWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTD-LLFHIDMRKR----N-D-GVSSHSEML 559 (850)
Q Consensus 487 ~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~-~~i~idms~~----~-~-~~~~~~~~l 559 (850)
.+|.+|+..+...|.. + .+.+++.||.|+|||+++.+++..+..... .++-+-.+.. . + ... ....+
T Consensus 28 ~~Q~~av~~~~~~i~~---~--~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~-~~~T~ 101 (459)
T 3upu_A 28 EGQKNAFNIVMKAIKE---K--KHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGK-EASTI 101 (459)
T ss_dssp HHHHHHHHHHHHHHHS---S--SCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSS-CEEEH
T ss_pred HHHHHHHHHHHHHHhc---C--CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhcc-chhhH
Confidence 3677888888777653 2 248999999999999999999988865443 3333321110 0 0 000 00011
Q ss_pred HHHh-------------------hhCCCEEEeeccccccCHHHHHHHHhhhc
Q 003070 560 MGTL-------------------KNYEKLVVLVEDIDLADPQFIKILADGFE 592 (850)
Q Consensus 560 ~e~v-------------------r~~P~sVvlldeiekA~~~v~~~l~q~~d 592 (850)
...+ ....+.+|++||+-..++..+..|++.+.
T Consensus 102 h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~ 153 (459)
T 3upu_A 102 HSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP 153 (459)
T ss_dssp HHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC
T ss_pred HHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc
Confidence 1111 12358899999999999999999999887
No 152
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.60 E-value=0.0023 Score=69.86 Aligned_cols=94 Identities=12% Similarity=0.194 Sum_probs=57.8
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc----ccCCCCCchhhHHHHhhhCCCEEEeeccccccCH----
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK----RNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADP---- 581 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~----~~~~~~~~~~~l~e~vr~~P~sVvlldeiekA~~---- 581 (850)
...++.||+|+|||.||.++|.. -|..-.++.+++.+ +.......+..+.+.+++.+ +|++|+|.--.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~ 200 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-LGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGG 200 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-HHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-----
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-CCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccccccc
Confidence 44689999999999999999987 44444566663222 11011112335667787776 999999985432
Q ss_pred ---------HHHHHHHhhhccCccCceEEEEecC
Q 003070 582 ---------QFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 582 ---------~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.+...|.+...--+-.++++|+|+|
T Consensus 201 ~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn 234 (331)
T 2vhj_A 201 NTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN 234 (331)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred ccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC
Confidence 1233333322221223888999998
No 153
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.55 E-value=0.001 Score=63.30 Aligned_cols=78 Identities=14% Similarity=0.139 Sum_probs=49.7
Q ss_pred CcHHHHHHHHHHHhc--CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHH
Q 003070 70 VSKEDIKLVFEVFLR--KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNL 147 (850)
Q Consensus 70 gRdeeirrVieIL~R--r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rl 147 (850)
|+++.++++.+.+.+ +...|.+|.|++|+|||.+++.++.... .++.++.+.+. .+. +
T Consensus 8 G~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-----------~~~~~~~~~~~------~~~---~ 67 (143)
T 3co5_A 8 GNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT-----------PWVSPARVEYL------IDM---P 67 (143)
T ss_dssp CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-----------CEECCSSTTHH------HHC---H
T ss_pred eCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-----------CeEEechhhCC------hHh---h
Confidence 667777777776654 5677899999999999998877654321 56666554321 000 1
Q ss_pred HHHHHHHhccccCCCCeEEEecchhhh
Q 003070 148 TELKRKVDSLTSVGGGAIIYTGDLKWT 174 (850)
Q Consensus 148 keL~~~V~~~~~~~~gvILfIdELh~l 174 (850)
..+ ++. .. +-+|||||++.+
T Consensus 68 ~~~---~~~---a~-~~~l~lDei~~l 87 (143)
T 3co5_A 68 MEL---LQK---AE-GGVLYVGDIAQY 87 (143)
T ss_dssp HHH---HHH---TT-TSEEEEEECTTC
T ss_pred hhH---HHh---CC-CCeEEEeChHHC
Confidence 222 222 12 347899999987
No 154
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.51 E-value=0.0029 Score=63.52 Aligned_cols=82 Identities=12% Similarity=0.026 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHH
Q 003070 72 KEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELK 151 (850)
Q Consensus 72 deeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~ 151 (850)
++-++.+-..+.....++.+|.|++|+|||.+++.++..+... +..++.++.+.+. .. +.+
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~-------~~~~~~~~~~~~~--~~--------~~~-- 97 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL-------ERRSFYIPLGIHA--SI--------STA-- 97 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEGGGGG--GS--------CGG--
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEHHHHH--HH--------HHH--
Confidence 4555555555554467889999999999999999999988764 3456666655331 11 111
Q ss_pred HHHhccccCCCCeEEEecchhhhhc
Q 003070 152 RKVDSLTSVGGGAIIYTGDLKWTVD 176 (850)
Q Consensus 152 ~~V~~~~~~~~gvILfIdELh~lvg 176 (850)
.++.. ....||+|||++.+-.
T Consensus 98 -~~~~~---~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 98 -LLEGL---EQFDLICIDDVDAVAG 118 (242)
T ss_dssp -GGTTG---GGSSEEEEETGGGGTT
T ss_pred -HHHhc---cCCCEEEEeccccccC
Confidence 11221 3467999999999854
No 155
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.45 E-value=0.0098 Score=62.43 Aligned_cols=75 Identities=11% Similarity=0.041 Sum_probs=52.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeEE
Q 003070 87 RRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAII 166 (850)
Q Consensus 87 K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvIL 166 (850)
.++.+|+|++|+|||-+++.++..+. ..++.++-..+ .....++.+.++..+.+.... ....|+
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~~----------~~~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~----~~~~i~ 136 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEAR----------VPFITASGSDF--VEMFVGVGAARVRDLFETAKR----HAPCIV 136 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHTT----------CCEEEEEHHHH--HHSTTTHHHHHHHHHHHHHHT----SCSEEE
T ss_pred CCeEEEECCCcChHHHHHHHHHHHcC----------CCEEEecHHHH--HHHHhhHHHHHHHHHHHHHHh----cCCcEE
Confidence 34589999999999999999988753 23555553322 223345666777777776653 346799
Q ss_pred EecchhhhhcC
Q 003070 167 YTGDLKWTVDQ 177 (850)
Q Consensus 167 fIdELh~lvga 177 (850)
++||++.+...
T Consensus 137 ~iDeid~l~~~ 147 (278)
T 1iy2_A 137 FIDEIDAVGRK 147 (278)
T ss_dssp EEETHHHHHCC
T ss_pred ehhhhHhhhcc
Confidence 99999988643
No 156
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.44 E-value=0.0069 Score=60.14 Aligned_cols=43 Identities=14% Similarity=0.329 Sum_probs=31.7
Q ss_pred HHHH-----hhhCCCEEEeeccc---cccCHHHHHHHHhhhccCccCceEEEEe
Q 003070 559 LMGT-----LKNYEKLVVLVEDI---DLADPQFIKILADGFETENFGKVIFVLT 604 (850)
Q Consensus 559 l~e~-----vr~~P~sVvlldei---ekA~~~v~~~l~q~~d~G~l~n~Iii~T 604 (850)
|+.+ +..+|. |++|||| ..-|+..+..|.+.+++. ..++|+.|
T Consensus 87 la~aa~~~~l~~~p~-llilDEigp~~~ld~~~~~~l~~~l~~~--~~~~i~~~ 137 (178)
T 1ye8_A 87 ILERAYREAKKDRRK-VIIIDEIGKMELFSKKFRDLVRQIMHDP--NVNVVATI 137 (178)
T ss_dssp HHHHHHHHHHHCTTC-EEEECCCSTTGGGCHHHHHHHHHHHTCT--TSEEEEEC
T ss_pred HHhhccccccccCCC-EEEEeCCCCcccCCHHHHHHHHHHHhcC--CCeEEEEE
Confidence 5664 677775 9999995 556899999999999883 23355444
No 157
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.42 E-value=0.00077 Score=72.55 Aligned_cols=55 Identities=13% Similarity=0.150 Sum_probs=42.1
Q ss_pred CcHHHHHHHHHHHhc--CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecc
Q 003070 70 VSKEDIKLVFEVFLR--KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFA 131 (850)
Q Consensus 70 gRdeeirrVieIL~R--r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~ 131 (850)
|++..++++++.+.+ ++..+.+|.|+||+|||.+++.++....+.. ..++.++.+
T Consensus 6 g~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~-------~~~v~v~~~ 62 (304)
T 1ojl_A 6 GSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSD-------RPLVTLNCA 62 (304)
T ss_dssp CCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSS-------SCCCEEECS
T ss_pred ECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccC-------CCeEEEeCC
Confidence 677888888888776 5778899999999999999999988654433 335555544
No 158
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.28 E-value=0.011 Score=62.50 Aligned_cols=89 Identities=13% Similarity=0.121 Sum_probs=57.8
Q ss_pred CcHHHHHHHHHHHhcCC---------CCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccCh
Q 003070 70 VSKEDIKLVFEVFLRKK---------RRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKK 140 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~---------K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~R 140 (850)
|.++-++.+...+.+.. ..+.+|+|+||+|||.+++.++..+.... ..++.++.+.+.- .
T Consensus 21 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~-------~~~~~~~~~~~~~----~ 89 (311)
T 4fcw_A 21 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE-------EAMIRIDMTEYME----K 89 (311)
T ss_dssp SCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCG-------GGEEEEEGGGCCS----T
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCC-------cceEEeecccccc----c
Confidence 67888888887777631 23678899999999999999999886543 2466666553310 0
Q ss_pred hHHHHHH-------------HHHHHHHhccccCCCCeEEEecchhhh
Q 003070 141 EEVEMNL-------------TELKRKVDSLTSVGGGAIIYTGDLKWT 174 (850)
Q Consensus 141 gefE~Rl-------------keL~~~V~~~~~~~~gvILfIdELh~l 174 (850)
....++ ..+...+.. .++-||||||++.+
T Consensus 90 -~~~~~l~g~~~~~~~~~~~~~~~~~~~~----~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 90 -HAVSRLIGAPPGYVGYEEGGQLTEAVRR----RPYSVILFDAIEKA 131 (311)
T ss_dssp -THHHHHHCCCTTSTTTTTCCHHHHHHHH----CSSEEEEEETGGGS
T ss_pred -ccHHHhcCCCCccccccccchHHHHHHh----CCCeEEEEeChhhc
Confidence 001111 123334443 45679999999876
No 159
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.23 E-value=0.0053 Score=82.93 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=63.2
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhhh---------CC-----CEEEeecc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKN---------YE-----KLVVLVED 575 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~---------~P-----~sVvllde 575 (850)
--+||.||+|+|||.+|+.++... ..-.++.+.++.+..+. ...+.+...+.. .| ..|||+||
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~--~~~~~~~infsa~ts~~-~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDE 1344 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS--SLYDVVGINFSKDTTTE-HILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDE 1344 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC--SSCEEEEEECCTTCCHH-HHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEET
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC--CCCceEEEEeecCCCHH-HHHHHHHHHhhhccccCCccccCCCCCceEEEEecc
Confidence 368999999999999995554443 23466777777652210 011122222210 12 36999999
Q ss_pred ccccCHH------HHHHHHhhhccCcc-----------CceEEEEecC
Q 003070 576 IDLADPQ------FIKILADGFETENF-----------GKVIFVLTKG 606 (850)
Q Consensus 576 iekA~~~------v~~~l~q~~d~G~l-----------~n~Iii~Tsn 606 (850)
|+.+..+ +..+|.|.+|.|.+ .|.+||.++|
T Consensus 1345 inmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~N 1392 (2695)
T 4akg_A 1345 INLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACN 1392 (2695)
T ss_dssp TTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEEC
T ss_pred cccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecC
Confidence 9887655 89999999998764 3789999999
No 160
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.23 E-value=0.0074 Score=63.68 Aligned_cols=95 Identities=12% Similarity=0.008 Sum_probs=62.1
Q ss_pred CCcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHH
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLT 148 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rlk 148 (850)
.|+++.++.+.+.+...+..+.+|.|++|+|||.+++.+++.+.... .+..++.++-+. ...-+++ .
T Consensus 24 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~----~~~~~~i----~ 90 (323)
T 1sxj_B 24 VGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS-----YADGVLELNASD----DRGIDVV----R 90 (323)
T ss_dssp CSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-----HHHHEEEECTTS----CCSHHHH----H
T ss_pred HCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCCEEEecCcc----ccChHHH----H
Confidence 38999999999999876666789999999999999999999875421 123355554321 0112233 3
Q ss_pred HHHHHHhc--ccc-CCCCeEEEecchhhhhc
Q 003070 149 ELKRKVDS--LTS-VGGGAIIYTGDLKWTVD 176 (850)
Q Consensus 149 eL~~~V~~--~~~-~~~gvILfIdELh~lvg 176 (850)
++.+.+.. ... .+...||+|||+|.+-.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~ 121 (323)
T 1sxj_B 91 NQIKHFAQKKLHLPPGKHKIVILDEADSMTA 121 (323)
T ss_dssp THHHHHHHBCCCCCTTCCEEEEEESGGGSCH
T ss_pred HHHHHHHhccccCCCCCceEEEEECcccCCH
Confidence 33333321 000 23479999999999843
No 161
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.14 E-value=0.019 Score=61.98 Aligned_cols=146 Identities=7% Similarity=-0.005 Sum_probs=83.5
Q ss_pred CCcHHHHHHHHHHHhcCCCCCe-EEEcCCCchHHHHHHHHHHhHHhCCCCc--c------------cCCcEEEEeecccc
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNT-VIVGDCLSITDALVFDFMGRVERGDVPQ--E------------LKQTHVIKFHFAPV 133 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NP-VLVGe~gvgktAvVegla~rI~~G~VP~--~------------Lkg~~visLdl~~l 133 (850)
.|+++.++.+.+.+...+..++ +|.|++|+|||.+++.+++.+....-+. . -....++.++-+.
T Consensus 19 vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 97 (373)
T 1jr3_A 19 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS- 97 (373)
T ss_dssp CSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC-
T ss_pred cCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccc-
Confidence 4899999999999887655554 7899999999999999999885421110 0 0001233333210
Q ss_pred cccccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccC
Q 003070 134 TLRFMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNS 213 (850)
Q Consensus 134 ~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~ 213 (850)
....++ +.++.+.+......++..||+|||+|++-.. +. ..+-++|..
T Consensus 98 ---~~~~~~----~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~------------------~~----~~Ll~~le~--- 145 (373)
T 1jr3_A 98 ---RTKVED----TRDLLDNVQYAPARGRFKVYLIDEVHMLSRH------------------SF----NALLKTLEE--- 145 (373)
T ss_dssp ---SCCSSC----HHHHHHHTTSCCSSSSSEEEEEECGGGSCHH------------------HH----HHHHHHHHS---
T ss_pred ---cCCHHH----HHHHHHHHhhccccCCeEEEEEECcchhcHH------------------HH----HHHHHHHhc---
Confidence 011122 3445555543222355799999999998321 11 123444442
Q ss_pred CCCCeEEEEecccHHHHHhhhhcCCcccccccceeeecCCCC
Q 003070 214 ASSTRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 214 ~arG~lwlIGatT~eeY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
..+.+.+|++|+... .-.+++-+| .+.+.++.++
T Consensus 146 -~~~~~~~Il~~~~~~-----~l~~~l~sr--~~~i~~~~l~ 179 (373)
T 1jr3_A 146 -PPEHVKFLLATTDPQ-----KLPVTILSR--CLQFHLKALD 179 (373)
T ss_dssp -CCSSEEEEEEESCGG-----GSCHHHHTT--SEEEECCCCC
T ss_pred -CCCceEEEEEeCChH-----hCcHHHHhh--eeEeeCCCCC
Confidence 235688888876321 123445443 3666665444
No 162
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.04 E-value=0.01 Score=63.48 Aligned_cols=75 Identities=11% Similarity=0.073 Sum_probs=47.0
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHH-HHHHHHHHhccccCCCCeE
Q 003070 87 RRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMN-LTELKRKVDSLTSVGGGAI 165 (850)
Q Consensus 87 K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~R-lkeL~~~V~~~~~~~~gvI 165 (850)
.++.+|.|+||+|||.+++.++..+... +.+++.++...+. ....+.++.. +..+.... ...-|
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-------~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~v 101 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-------GYRVIYSSADDFA--QAMVEHLKKGTINEFRNMY------KSVDL 101 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-------TCCEEEEEHHHHH--HHHHHHHHHTCHHHHHHHH------HTCSE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEHHHHH--HHHHHHHHcCcHHHHHHHh------cCCCE
Confidence 3577788999999999999999988764 4567777644221 0011222111 11222222 23679
Q ss_pred EEecchhhhhc
Q 003070 166 IYTGDLKWTVD 176 (850)
Q Consensus 166 LfIdELh~lvg 176 (850)
|||||+|.+-+
T Consensus 102 L~iDEi~~l~~ 112 (324)
T 1l8q_A 102 LLLDDVQFLSG 112 (324)
T ss_dssp EEEECGGGGTT
T ss_pred EEEcCcccccC
Confidence 99999999865
No 163
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.02 E-value=0.0063 Score=60.68 Aligned_cols=90 Identities=11% Similarity=0.138 Sum_probs=54.2
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEe--cCcc-ccC----C------C---CCchhhHHHHhhhCCCEEEeecc
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHI--DMRK-RND----G------V---SSHSEMLMGTLKNYEKLVVLVED 575 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~i--dms~-~~~----~------~---~~~~~~l~e~vr~~P~sVvllde 575 (850)
.++.||.|+|||+++..++..+.+.....+-+ .... +.. . . ..-...+.+.++ +++.||++||
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviIDE 84 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFIDE 84 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEEEC
Confidence 56899999999999988876654333322211 1111 100 0 0 000122333333 4688999999
Q ss_pred ccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 576 IDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 576 iekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
|..-++++...|....+.| ..||+|..
T Consensus 85 ~Q~~~~~~~~~l~~l~~~~----~~Vi~~Gl 111 (184)
T 2orw_A 85 VQFFNPSLFEVVKDLLDRG----IDVFCAGL 111 (184)
T ss_dssp GGGSCTTHHHHHHHHHHTT----CEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHCC----CCEEEEee
Confidence 9999888888888888873 34555433
No 164
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.00 E-value=0.033 Score=64.46 Aligned_cols=109 Identities=13% Similarity=0.122 Sum_probs=65.9
Q ss_pred CchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHH----HhcCCCCceEEecCcccc---C----------
Q 003070 488 WQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAE----SVFGSTDLLFHIDMRKRN---D---------- 550 (850)
Q Consensus 488 gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~----~lfgs~~~~i~idms~~~---~---------- 550 (850)
|-++.+..|.+.+... .+.....+.+.|+-|+|||+||+.++. .+-+.-+..+-++.+... -
T Consensus 132 GR~~~~~~l~~~L~~~-~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEM-CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCHHHHHHHHHHHHHH-TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcc-cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 5555555555555322 123457888999999999999999995 332223444555665521 0
Q ss_pred --CC------CC--------chhhHHHHhhhCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 551 --GV------SS--------HSEMLMGTLKNYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 551 --~~------~~--------~~~~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.. +. ....|.+.++.+..-+|+||||+..+.. .+.. ...+-||+||+
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~---~~~~------~~gs~ilvTTR 273 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI---RWAQ------ELRLRCLVTTR 273 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH---HHHH------HTTCEEEEEES
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh---cccc------cCCCEEEEEcC
Confidence 00 01 1245667777763459999999986543 1111 15677778887
No 165
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.93 E-value=0.0086 Score=63.27 Aligned_cols=96 Identities=7% Similarity=0.011 Sum_probs=61.0
Q ss_pred CCcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHH
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLT 148 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rlk 148 (850)
.|+++.++.+...+...+-.+.+|.|++|+|||.+++.+++.+.... ....++.++-+.. . ....+.+.++
T Consensus 28 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-----~~~~~~~~~~~~~--~--~~~~~~~~~~ 98 (327)
T 1iqp_A 28 VGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN-----WRHNFLELNASDE--R--GINVIREKVK 98 (327)
T ss_dssp CSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG-----HHHHEEEEETTCH--H--HHHTTHHHHH
T ss_pred hCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCceEEeecccc--C--chHHHHHHHH
Confidence 38999999999999877666789999999999999999999875321 1123455443211 0 0122223333
Q ss_pred HHHHHHhccccCCCCeEEEecchhhhh
Q 003070 149 ELKRKVDSLTSVGGGAIIYTGDLKWTV 175 (850)
Q Consensus 149 eL~~~V~~~~~~~~gvILfIdELh~lv 175 (850)
+..... . ...++..||+|||++.+-
T Consensus 99 ~~~~~~-~-~~~~~~~vliiDe~~~l~ 123 (327)
T 1iqp_A 99 EFARTK-P-IGGASFKIIFLDEADALT 123 (327)
T ss_dssp HHHHSC-C-GGGCSCEEEEEETGGGSC
T ss_pred HHHhhC-C-cCCCCCeEEEEeCCCcCC
Confidence 332110 0 011457899999999873
No 166
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.73 E-value=0.013 Score=68.52 Aligned_cols=91 Identities=11% Similarity=0.075 Sum_probs=60.8
Q ss_pred CchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhH--------
Q 003070 488 WQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEML-------- 559 (850)
Q Consensus 488 gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l-------- 559 (850)
+|.+|+..+. ....+++.||.|+|||+++++|+..+-.....++-+-.+-. ....|
T Consensus 193 ~Q~~Av~~~~----------~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~------Aa~~L~e~~~~~a 256 (574)
T 3e1s_A 193 EQASVLDQLA----------GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGK------AARRLGEVTGRTA 256 (574)
T ss_dssp HHHHHHHHHT----------TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHH------HHHHHHHHHTSCE
T ss_pred HHHHHHHHHH----------hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHH------HHHHhHhhhcccH
Confidence 5666666554 13588899999999999999999887644433332211100 00111
Q ss_pred ---HHHh------------hhCCCEEEeeccccccCHHHHHHHHhhhccC
Q 003070 560 ---MGTL------------KNYEKLVVLVEDIDLADPQFIKILADGFETE 594 (850)
Q Consensus 560 ---~e~v------------r~~P~sVvlldeiekA~~~v~~~l~q~~d~G 594 (850)
...+ ...++.||++||.-..+...+..|++++..|
T Consensus 257 ~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~~~ 306 (574)
T 3e1s_A 257 STVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVPPG 306 (574)
T ss_dssp EEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTSCTT
T ss_pred HHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhCcCC
Confidence 1111 2236889999999999999999999988744
No 167
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.66 E-value=0.013 Score=62.72 Aligned_cols=100 Identities=8% Similarity=0.066 Sum_probs=61.2
Q ss_pred CCcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHH
Q 003070 69 SVSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLT 148 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rlk 148 (850)
.|+++.++.+...+...+..+.+|.|+||+|||.+++.+++.+...+ .....++.++.+.. ..-+.+.+.+.
T Consensus 40 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~~~~----~~~~~~~~~~~ 111 (353)
T 1sxj_D 40 TAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD----LMKSRILELNASDE----RGISIVREKVK 111 (353)
T ss_dssp CSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHH----HHTTSEEEECSSSC----CCHHHHTTHHH
T ss_pred hCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCc----ccccceEEEccccc----cchHHHHHHHH
Confidence 37888888888888876667799999999999999999999875310 11234555543321 11223333333
Q ss_pred HHHHH-Hh-------ccccCCCCeEEEecchhhhhc
Q 003070 149 ELKRK-VD-------SLTSVGGGAIIYTGDLKWTVD 176 (850)
Q Consensus 149 eL~~~-V~-------~~~~~~~gvILfIdELh~lvg 176 (850)
..... +. .....+...||+|||++.+-.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~ 147 (353)
T 1sxj_D 112 NFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA 147 (353)
T ss_dssp HHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH
T ss_pred HHhhhcccccchhhcccCCCCCceEEEEECCCccCH
Confidence 32211 00 000013467999999998743
No 168
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.63 E-value=0.017 Score=62.99 Aligned_cols=81 Identities=11% Similarity=0.099 Sum_probs=56.3
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecC-ccccC----CCCCch--------hhHHHHhhhCCCEEEeeccc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDM-RKRND----GVSSHS--------EMLMGTLKNYEKLVVLVEDI 576 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idm-s~~~~----~~~~~~--------~~l~e~vr~~P~sVvlldei 576 (850)
..++++||+|+|||+|.++|+.++-- ....|.++- .++.- ..-+|+ ..|+.+++.+|- +++|||+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~-ilildE~ 249 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPD-RIILGEL 249 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCS-EEEECCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCC-EEEEcCC
Confidence 47889999999999999999988754 345566652 22211 001122 268899999997 9999999
Q ss_pred cccCHHHHHHHHhhhccCc
Q 003070 577 DLADPQFIKILADGFETEN 595 (850)
Q Consensus 577 ekA~~~v~~~l~q~~d~G~ 595 (850)
-- .+++.. ++++.+|+
T Consensus 250 ~~--~e~~~~-l~~~~~g~ 265 (330)
T 2pt7_A 250 RS--SEAYDF-YNVLCSGH 265 (330)
T ss_dssp CS--THHHHH-HHHHHTTC
T ss_pred Ch--HHHHHH-HHHHhcCC
Confidence 75 356664 56666764
No 169
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.60 E-value=0.021 Score=58.90 Aligned_cols=89 Identities=9% Similarity=0.012 Sum_probs=52.3
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccc--------cC---C-----------CCCc----hhhHHHHhhh
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR--------ND---G-----------VSSH----SEMLMGTLKN 565 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~--------~~---~-----------~~~~----~~~l~e~vr~ 565 (850)
++++||+|.|||.+|..++..+ + ...+|-.....- .. . .... .+.+...+..
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~-~-~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~~l~~~~~~ 188 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL-S-TPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAYVNAEK 188 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS-C-SCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHHHHHHTHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc-C-CCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHHHHHhhHHH
Confidence 8899999999999999988776 2 233333322110 00 0 0000 1222222221
Q ss_pred --CCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 566 --YEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 566 --~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+.+.+|++||+.......+..+++.+. ...++.||..
T Consensus 189 ~~~~~~llIiDEaH~l~~~~~~~i~~~~~----~~~~l~LSAT 227 (237)
T 2fz4_A 189 LGNRFMLLIFDEVHHLPAESYVQIAQMSI----APFRLGLTAT 227 (237)
T ss_dssp HTTTCSEEEEECSSCCCTTTHHHHHHTCC----CSEEEEEEES
T ss_pred hcccCCEEEEECCccCCChHHHHHHHhcc----CCEEEEEecC
Confidence 457899999999887655555655553 2456777766
No 170
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.60 E-value=0.047 Score=63.20 Aligned_cols=108 Identities=15% Similarity=0.208 Sum_probs=60.5
Q ss_pred CCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHH------HHhcCCCCceEEecCcccc----------
Q 003070 486 VPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIA------ESVFGSTDLLFHIDMRKRN---------- 549 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA------~~lfgs~~~~i~idms~~~---------- 549 (850)
++|-++.+..|.+.+.... .....+.+.||.|+|||+||++++ ..-|...-..+.++-....
T Consensus 126 ~vGR~~~l~~L~~~L~~~~--~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~ 203 (591)
T 1z6t_A 126 FVTRKKLVNAIQQKLSKLK--GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLC 203 (591)
T ss_dssp CCCCHHHHHHHHHHHTTST--TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHH
T ss_pred ecccHHHHHHHHHHHhccc--CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHH
Confidence 4555555555555554321 224678899999999999999997 3345433334444321100
Q ss_pred ----------CCCCCch----hhHHHHhhh--CCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 550 ----------DGVSSHS----EMLMGTLKN--YEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 550 ----------~~~~~~~----~~l~e~vr~--~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
..++.-. ..|.+.+.+ +|+ +|+|||++..+ .++.+. .++-||+||+
T Consensus 204 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-LLVLDdv~~~~------~l~~l~----~~~~ilvTsR 265 (591)
T 1z6t_A 204 TRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRS-LLILDDVWDSW------VLKAFD----SQCQILLTTR 265 (591)
T ss_dssp HHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTC-EEEEEEECCHH------HHHTTC----SSCEEEEEES
T ss_pred HHhccccccccCCCCCHHHHHHHHHHHHccCCCCe-EEEEeCCCCHH------HHHHhc----CCCeEEEECC
Confidence 0011112 234455555 455 89999998532 223332 3567777877
No 171
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.43 E-value=0.013 Score=79.92 Aligned_cols=92 Identities=18% Similarity=0.192 Sum_probs=63.2
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHh--hh--------CC-----CEEEeeccc
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTL--KN--------YE-----KLVVLVEDI 576 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~v--r~--------~P-----~sVvlldei 576 (850)
+||.||+|+|||.+++.....+.+ ..++++++|.+..+ ....+.+...+ |+ .| ..|+|+|||
T Consensus 1307 vLL~GptGtGKT~li~~~L~~l~~--~~~~~infS~~Tta-~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1307 LILCGPPGSGKTMTLTSTLRAFPD--FEVVSLNFSSATTP-ELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp CEEESSTTSSHHHHHHHHGGGCTT--EEEEEECCCTTCCH-HHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCC--CceEEEEeeCCCCH-HHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 689999999999877654444433 46788999876321 00111221111 11 12 359999999
Q ss_pred cccCHH------HHHHHHhhhccCcc-----------CceEEEEecC
Q 003070 577 DLADPQ------FIKILADGFETENF-----------GKVIFVLTKG 606 (850)
Q Consensus 577 ekA~~~------v~~~l~q~~d~G~l-----------~n~Iii~Tsn 606 (850)
..+.++ +..+|.|.+|.|.+ .|..||.|+|
T Consensus 1384 Nmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamn 1430 (3245)
T 3vkg_A 1384 NLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACN 1430 (3245)
T ss_dssp TCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEEC
T ss_pred CCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcC
Confidence 999876 99999999998864 3888999998
No 172
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.18 E-value=0.019 Score=66.80 Aligned_cols=76 Identities=7% Similarity=0.021 Sum_probs=41.2
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeeccccc----ccc---cChhHHHHHHHHHHHHHhcccc
Q 003070 87 RRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVT----LRF---MKKEEVEMNLTELKRKVDSLTS 159 (850)
Q Consensus 87 K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~----~~~---~~RgefE~RlkeL~~~V~~~~~ 159 (850)
..+.+|+|+||+|||-+++.++..+. ..++.+.++.+. +.+ ...|....++..+......
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l~----------~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~--- 174 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSLG----------RKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGK--- 174 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHHT----------CEEEEECCCC--------------------CHHHHHHTTCS---
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC----------CCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhc---
Confidence 45788999999999999999988772 234444433211 001 1123333343333332221
Q ss_pred CCCCeEEEecchhhhhcC
Q 003070 160 VGGGAIIYTGDLKWTVDQ 177 (850)
Q Consensus 160 ~~~gvILfIdELh~lvga 177 (850)
. +-||||||++.+-..
T Consensus 175 -~-~~vl~lDEid~l~~~ 190 (543)
T 3m6a_A 175 -L-NPVFLLDEIDKMSSD 190 (543)
T ss_dssp -S-SEEEEEEESSSCC--
T ss_pred -c-CCEEEEhhhhhhhhh
Confidence 2 339999999988654
No 173
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.15 E-value=0.023 Score=56.72 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=22.7
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
+...+++.||+|+|||.|++.||..+-
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345788999999999999999996654
No 174
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.07 E-value=0.016 Score=61.54 Aligned_cols=81 Identities=16% Similarity=0.243 Sum_probs=50.0
Q ss_pred eEEEEecCCchHHHHHHHHHHHH--hcCCCCceEEecCccccCCCCCchhhHHHHhhhCCCEEEeeccccccCHHHHHHH
Q 003070 510 TWFLLQGNDTIGKRRLALSIAES--VFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIKIL 587 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~--lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~~P~sVvlldeiekA~~~v~~~l 587 (850)
.-++|.||.|+|||.+|++||.. ++|.- +-+. . .+ -|.+. . ...|+|.||...-+ +.+..+
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l~G~v------n~~~---~--~f--~l~~~-~--~k~i~l~Ee~~~~~-d~~~~l 167 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPFYGCV------NWTN---E--NF--PFNDC-V--DKMVIWWEEGKMTA-KVVESA 167 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCEEEC------CTTC---S--SC--TTGGG-S--SCSEEEECSCCEET-TTHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhccccee------eccc---c--cc--ccccc-c--ccEEEEeccccchh-HHHHHH
Confidence 45999999999999999999986 45421 1111 1 01 11111 1 11477777775444 455567
Q ss_pred HhhhccCc------------cCceEEEEecCC
Q 003070 588 ADGFETEN------------FGKVIFVLTKGD 607 (850)
Q Consensus 588 ~q~~d~G~------------l~n~Iii~Tsn~ 607 (850)
..+++-+. +..+-||+|||.
T Consensus 168 r~i~~G~~~~id~K~k~~~~v~~tPvIitsN~ 199 (267)
T 1u0j_A 168 KAILGGSKVRVDQKCKSSAQIDPTPVIVTSNT 199 (267)
T ss_dssp HHHHTTCCEEC------CCEECCCCEEEEESS
T ss_pred HHHhCCCcEEEecCcCCcccccCCCEEEEecC
Confidence 77776332 347889999994
No 175
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.06 E-value=0.072 Score=59.99 Aligned_cols=87 Identities=16% Similarity=0.144 Sum_probs=58.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEec-CccccC---------C--CCCchhhHHHHhhhCCCEEEeec
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID-MRKRND---------G--VSSHSEMLMGTLKNYEKLVVLVE 574 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id-ms~~~~---------~--~~~~~~~l~e~vr~~P~sVvlld 574 (850)
++.+.++++||+|+|||++.++|+.++--....++.+. --++.- . .-.|.+.|..+||++|. ++++.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd-~i~vg 243 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPD-VVMVG 243 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCS-EEEES
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCC-eEEEc
Confidence 45689999999999999999999998865555555442 122210 0 11233467788999996 88899
Q ss_pred cccccCHHHHHHHHhhhccCcc
Q 003070 575 DIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 575 eiekA~~~v~~~l~q~~d~G~l 596 (850)
||- +.......+++..+|.+
T Consensus 244 EiR--d~et~~~~l~a~~tGhl 263 (418)
T 1p9r_A 244 EIR--DLETAQIAVQASLTGHL 263 (418)
T ss_dssp CCC--SHHHHHHHHHHHHTTCE
T ss_pred CcC--CHHHHHHHHHHHHhCCC
Confidence 886 33333344456667765
No 176
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.80 E-value=0.061 Score=63.34 Aligned_cols=99 Identities=13% Similarity=0.176 Sum_probs=59.2
Q ss_pred CCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhc----CCCCceEEecCc--------cc-c---
Q 003070 486 VPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVF----GSTDLLFHIDMR--------KR-N--- 549 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lf----gs~~~~i~idms--------~~-~--- 549 (850)
..+|.+||..+. . ..-+++.||+|+|||+++..|...+- +....++-+-.+ +. .
T Consensus 151 ~~~Q~~Ai~~~l-------~---~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~ 220 (608)
T 1w36_D 151 INWQKVAAAVAL-------T---RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKAL 220 (608)
T ss_dssp CCHHHHHHHHHH-------T---BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHh-------c---CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHH
Confidence 577999887653 1 24788999999999999988887765 222222222111 00 0
Q ss_pred ---------------CC--CCCchhh------H-HHHhhhCCCEEEeeccccccCHHHHHHHHhhhccC
Q 003070 550 ---------------DG--VSSHSEM------L-MGTLKNYEKLVVLVEDIDLADPQFIKILADGFETE 594 (850)
Q Consensus 550 ---------------~~--~~~~~~~------l-~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~d~G 594 (850)
.. .+.+++. + ...-+..++.||++||....+...+..|++++..|
T Consensus 221 ~~l~l~~~~~~~~~~~~~Tih~ll~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~~~~~~~Ll~~l~~~ 289 (608)
T 1w36_D 221 RQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDH 289 (608)
T ss_dssp HHSSCCSCCCCSCSCCCBTTTSCC-----------CTTSCCSCSEEEECSGGGCBHHHHHHHHHTCCTT
T ss_pred hcCCCCHHHHhccchhhhhhHhhhccCCCchHHHhccCCCCCCCEEEEechhhCCHHHHHHHHHhCCCC
Confidence 00 0011110 0 00011125789999999999998888888887543
No 177
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.78 E-value=0.046 Score=61.90 Aligned_cols=98 Identities=14% Similarity=0.178 Sum_probs=57.3
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCce--EEecCcccc---------C--CCCC--------chhhH---HHHhh
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLL--FHIDMRKRN---------D--GVSS--------HSEML---MGTLK 564 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~--i~idms~~~---------~--~~~~--------~~~~l---~e~vr 564 (850)
...++|.||+|+|||+++..||..+-...... +..|.-... + .-+- .+..+ .+.++
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 47899999999999999999998876443443 444432100 0 0000 11122 23344
Q ss_pred hCCCEEEeeccccccC----HHHHHHHHhhhccCccCceEEEEecC
Q 003070 565 NYEKLVVLVEDIDLAD----PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 565 ~~P~sVvlldeiekA~----~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.+-|.||++|.--..| +....-+.++...-.-..+++|+.+.
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~ 222 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDAS 222 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCc
Confidence 4668899999987644 44444444333221223677888776
No 178
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.59 E-value=0.056 Score=73.96 Aligned_cols=87 Identities=7% Similarity=0.087 Sum_probs=65.8
Q ss_pred EEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchh-hHHHHhhhCCCEEEeeccccccCHHHHHHHHhhh
Q 003070 513 LLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSE-MLMGTLKNYEKLVVLVEDIDLADPQFIKILADGF 591 (850)
Q Consensus 513 lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~-~l~e~vr~~P~sVvlldeiekA~~~v~~~l~q~~ 591 (850)
...||.|+|||+++|.||+.+ ...++.|++++.... ..++ .+.++++. ..-.+||||.+++++|...+.|.|
T Consensus 608 ~~~GPaGtGKTet~k~La~~l---gr~~~vfnC~~~~d~--~~~g~i~~G~~~~--GaW~cfDEfNrl~~~vLSvv~~qi 680 (3245)
T 3vkg_A 608 NPFGPAGTGKTETVKALGSQL---GRFVLVFCCDEGFDL--QAMSRIFVGLCQC--GAWGCFDEFNRLEERILSAVSQQI 680 (3245)
T ss_dssp EEECSTTSSHHHHHHHHHHHT---TCCEEEEECSSCCCH--HHHHHHHHHHHHH--TCEEEEETTTSSCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHh---CCeEEEEeCCCCCCH--HHHHHHHhhHhhc--CcEEEehhhhcCCHHHHHHHHHHH
Confidence 367999999999999999998 477889999875321 1234 45666654 457799999999999999988855
Q ss_pred c----------------cCc-c---CceEEEEecC
Q 003070 592 E----------------TEN-F---GKVIFVLTKG 606 (850)
Q Consensus 592 d----------------~G~-l---~n~Iii~Tsn 606 (850)
. .|+ + .++-|++|.|
T Consensus 681 ~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmN 715 (3245)
T 3vkg_A 681 QTIQVALKENSKEVELLGGKNISLHQDMGIFVTMN 715 (3245)
T ss_dssp HHHHHHHHHTCSEECCC---CEECCTTCEEEECBC
T ss_pred HHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeC
Confidence 5 243 2 2888999999
No 179
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.54 E-value=0.1 Score=55.55 Aligned_cols=35 Identities=34% Similarity=0.341 Sum_probs=27.4
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
..-+++.||+|+|||++|+.|++.+- ...++||..
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D 67 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDND 67 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEech
Confidence 35678999999999999999998762 245666653
No 180
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.46 E-value=0.039 Score=55.31 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.7
Q ss_pred EEEEecCCchHHHHHHHHHHHHhc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
.+.|+||+|+|||++.+.||..+-
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 467999999999999999999874
No 181
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.44 E-value=0.032 Score=55.17 Aligned_cols=42 Identities=7% Similarity=0.061 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCC----CCeEEEcCCCchHHHHHHHHHHhHHhC
Q 003070 73 EDIKLVFEVFLRKKR----RNTVIVGDCLSITDALVFDFMGRVERG 114 (850)
Q Consensus 73 eeirrVieIL~Rr~K----~NPVLVGe~gvgktAvVegla~rI~~G 114 (850)
+-+..+.+.+....+ ++.+|.|++|+|||.++..++..+...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 344555555554321 788899999999999999999988653
No 182
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.42 E-value=0.13 Score=58.29 Aligned_cols=98 Identities=12% Similarity=0.061 Sum_probs=57.6
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC-------------C------C--CCchhhH---HHHhh
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND-------------G------V--SSHSEML---MGTLK 564 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~-------------~------~--~~~~~~l---~e~vr 564 (850)
-..++|.||+|+|||+++..||..+-......+-++...|-. . . ...++.+ .+..+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999988875544544444433210 0 0 0111222 23345
Q ss_pred hCCCEEEeeccccccC--HHHHHHHHhhhccCccCceEEEEecC
Q 003070 565 NYEKLVVLVEDIDLAD--PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 565 ~~P~sVvlldeiekA~--~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.+.|.||++|..-..| .....-|.++.+.-.-..+++|+-+.
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~ 223 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGT 223 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCC
Confidence 5778999999876544 34444443322221223566777554
No 183
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.34 E-value=0.086 Score=54.94 Aligned_cols=92 Identities=15% Similarity=0.133 Sum_probs=51.3
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCch------------hhHHHHhhhCCCEEEeeccccc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHS------------EMLMGTLKNYEKLVVLVEDIDL 578 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~------------~~l~e~vr~~P~sVvlldeiek 578 (850)
-++|.|++|+|||++|+.||+.+-...-.++.+|...+-+.-.+|. ..+.+++. + .+|++|.. -
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~~~~e~~~~~~~~~~i~~~l~-~--~~vIiD~~-~ 81 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALK-N--YWVIVDDT-N 81 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCCGGGHHHHHHHHHHHHHHHHT-T--SEEEECSC-C
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh-C--CEEEEeCC-c
Confidence 5789999999999999999998632223445445433211101111 12333333 3 46777763 2
Q ss_pred cCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 579 ADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 579 A~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
..+.....|.+..........+|.+.+.
T Consensus 82 ~~~~~~~~l~~~a~~~~~~~~vi~l~~~ 109 (260)
T 3a4m_A 82 YYNSMRRDLINIAKKYNKNYAIIYLKAS 109 (260)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEEECC
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEEEeCC
Confidence 3345555565555444444667777654
No 184
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.22 E-value=0.17 Score=52.26 Aligned_cols=94 Identities=9% Similarity=0.072 Sum_probs=57.4
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEe--cCccccC----CCCC---------chhhHHHHhhh----CCCE
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHI--DMRKRND----GVSS---------HSEMLMGTLKN----YEKL 569 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~i--dms~~~~----~~~~---------~~~~l~e~vr~----~P~s 569 (850)
..-.++.||.|+|||+++..+|.-+-+.....+-+ -.....+ +.-| ....+.+.+++ .++.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 34566689999999999999987665443333333 2211100 0000 11245555555 5689
Q ss_pred EEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 570 VVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 570 VvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
||++||+.--+.++...+....+. +.-+|+|--
T Consensus 92 vViIDEaQ~l~~~~ve~l~~L~~~----gi~Vil~Gl 124 (223)
T 2b8t_A 92 VIGIDEVQFFDDRICEVANILAEN----GFVVIISGL 124 (223)
T ss_dssp EEEECSGGGSCTHHHHHHHHHHHT----TCEEEEECC
T ss_pred EEEEecCccCcHHHHHHHHHHHhC----CCeEEEEec
Confidence 999999998777766666555554 456677655
No 185
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.16 E-value=0.034 Score=55.79 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhc--CCCCceEEec
Q 003070 491 DSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVF--GSTDLLFHID 544 (850)
Q Consensus 491 eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lf--gs~~~~i~id 544 (850)
+.+.+|++.|... .++.-.+.+.||+|+|||+|++.|+.++- |.....|.+|
T Consensus 6 ~~~~~~~~~~~~~--~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d 59 (208)
T 3c8u_A 6 ALCQGVLERLDPR--QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD 59 (208)
T ss_dssp HHHHHHHHHSCTT--CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESG
T ss_pred HHHHHHHHHHHhc--CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecC
Confidence 3555566555433 34456788999999999999999999985 3223444444
No 186
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.14 E-value=0.11 Score=64.59 Aligned_cols=108 Identities=16% Similarity=0.235 Sum_probs=59.4
Q ss_pred CCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHH---hcCC-CCceEEecCccccC-----------
Q 003070 486 VPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAES---VFGS-TDLLFHIDMRKRND----------- 550 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~---lfgs-~~~~i~idms~~~~----------- 550 (850)
++|=++.+..|.+.+... ......+.+.|+-|+|||+||++++.. +.+. .+..+-++++....
T Consensus 126 ~vgR~~~~~~l~~~l~~~--~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 203 (1249)
T 3sfz_A 126 FVTRKKLVHAIQQKLWKL--NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLC 203 (1249)
T ss_dssp CCCCHHHHHHHHHHHHTT--TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHH
T ss_pred eccHHHHHHHHHHHHhhc--cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHH
Confidence 334444444444444322 123457889999999999999998754 2221 23344555554210
Q ss_pred -----------CCCCchhhHHHHhh------hCCCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 551 -----------GVSSHSEMLMGTLK------NYEKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 551 -----------~~~~~~~~l~e~vr------~~P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
..+.-.+.+.+.++ .+++ +|+|||++... .+..+. .++-||+||+
T Consensus 204 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-LlvlDd~~~~~------~~~~~~----~~~~ilvTtR 265 (1249)
T 3sfz_A 204 MRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRS-LLILDDVWDPW------VLKAFD----NQCQILLTTR 265 (1249)
T ss_dssp HHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSC-EEEEESCCCHH------HHTTTC----SSCEEEEEES
T ss_pred HHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCE-EEEEecCCCHH------HHHhhc----CCCEEEEEcC
Confidence 01112345555555 3466 88899999642 122332 3556777776
No 187
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.13 E-value=0.42 Score=51.10 Aligned_cols=96 Identities=19% Similarity=0.194 Sum_probs=52.0
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcC-CCCceEEecCccccC-------------CCCCc----hhhHHHHhh-hCCC
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFG-STDLLFHIDMRKRND-------------GVSSH----SEMLMGTLK-NYEK 568 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfg-s~~~~i~idms~~~~-------------~~~~~----~~~l~e~vr-~~P~ 568 (850)
+...++|+||+|+|||+++..||..+-- ....+.-+|..-|.. +-+-+ ...+..++. -+.|
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 3468889999999999999999988752 333444444433310 00000 012222221 1456
Q ss_pred EEEeeccc--cccCHHHHHHHHhhhccCccCceEEEE
Q 003070 569 LVVLVEDI--DLADPQFIKILADGFETENFGKVIFVL 603 (850)
Q Consensus 569 sVvlldei--ekA~~~v~~~l~q~~d~G~l~n~Iii~ 603 (850)
.+||+|-- +..+.....-|.+.+....-..+++|+
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl 220 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVL 220 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEE
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEE
Confidence 79999943 233334444455555422222456677
No 188
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.12 E-value=0.053 Score=51.26 Aligned_cols=85 Identities=13% Similarity=0.129 Sum_probs=50.5
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccc--c----CC-----------------CCC-chhhHHHHhhhC
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR--N----DG-----------------VSS-HSEMLMGTLKNY 566 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~--~----~~-----------------~~~-~~~~l~e~vr~~ 566 (850)
-++|.||+|+|||++|+.| +.+ | +..++++.. . .. +.. ....+.+.++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~-g----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 76 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER-G----AKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGTS 76 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT-T----CEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHH-HHC-C----CcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Confidence 3678999999999999999 443 3 334444331 0 00 011 112355556556
Q ss_pred CCEEEeeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 567 EKLVVLVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 567 P~sVvlldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+..+|++|.+ -++.-...|.+.+.. ...+|.+.+.
T Consensus 77 ~~~~vi~dg~--~~~~~~~~l~~~~~~---~~~~i~l~~~ 111 (179)
T 3lw7_A 77 NHDLVVFDGV--RSLAEVEEFKRLLGD---SVYIVAVHSP 111 (179)
T ss_dssp CCSCEEEECC--CCHHHHHHHHHHHCS---CEEEEEEECC
T ss_pred CCCeEEEeCC--CCHHHHHHHHHHhCC---CcEEEEEECC
Confidence 6678888887 556666666666542 2456666554
No 189
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.08 E-value=0.057 Score=62.37 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=57.4
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEe-cCccccC----------------CCCCchhhHHHHhhhCCCEEEee
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHI-DMRKRND----------------GVSSHSEMLMGTLKNYEKLVVLV 573 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~i-dms~~~~----------------~~~~~~~~l~e~vr~~P~sVvll 573 (850)
.++++||+|+|||++.++|+.++- .....|.+ |-.++.- ...++.+.+..++|.+|- ++++
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~-~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD-~iiv 339 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIP-PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPD-YIIV 339 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSC-TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCS-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC-CCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCC-eEEe
Confidence 589999999999999999998884 34556666 3333211 012344567788999997 6788
Q ss_pred ccccccCHHHHHHHHhhhccCcc
Q 003070 574 EDIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 574 deiekA~~~v~~~l~q~~d~G~l 596 (850)
.|+--. +.. .++|++.+|..
T Consensus 340 gEir~~--E~~-~~l~a~~tGh~ 359 (511)
T 2oap_1 340 GEVRGR--EAQ-TLFQAMSTGHA 359 (511)
T ss_dssp SCCCST--HHH-HHHHHHHTTCE
T ss_pred CCcCHH--HHH-HHHHhhcCCCC
Confidence 998754 344 46788888875
No 190
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.77 E-value=0.067 Score=58.66 Aligned_cols=79 Identities=8% Similarity=-0.006 Sum_probs=51.4
Q ss_pred CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCC--------------------CcccCCcEEEEeecccccccccChhHHH
Q 003070 85 KKRRNTVIVGDCLSITDALVFDFMGRVERGDV--------------------PQELKQTHVIKFHFAPVTLRFMKKEEVE 144 (850)
Q Consensus 85 r~K~NPVLVGe~gvgktAvVegla~rI~~G~V--------------------P~~Lkg~~visLdl~~l~~~~~~RgefE 144 (850)
++++..||+|.+|+|||++...||+++. |++ |++..|+.-.-+|+-........-++|-
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~-~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~ 116 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP-LEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFR 116 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC-EEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHH
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC-CcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHH
Confidence 3445789999999999999999999874 111 4556665444444332101223478899
Q ss_pred HHHHHHHHHHhccccCCCCeEEEe
Q 003070 145 MNLTELKRKVDSLTSVGGGAIIYT 168 (850)
Q Consensus 145 ~RlkeL~~~V~~~~~~~~gvILfI 168 (850)
+...++++++.+ .+.++|.+
T Consensus 117 ~~a~~~i~~i~~----~g~~pIlv 136 (339)
T 3a8t_A 117 SLAGKAVSEITG----RRKLPVLV 136 (339)
T ss_dssp HHHHHHHHHHHH----TTCEEEEE
T ss_pred HHHHHHHHHHHh----cCCeEEEE
Confidence 888888888865 34444444
No 191
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.68 E-value=0.092 Score=57.23 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=37.4
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc-cccCCCCCchhhHHHHhhhCCCEEEeecccc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR-KRNDGVSSHSEMLMGTLKNYEKLVVLVEDID 577 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms-~~~~~~~~~~~~l~e~vr~~P~sVvlldeie 577 (850)
-+++.||+|+|||++|++||+.+ .-.+|..|-- .|.+-.-|--.--.+....-|| .|+|.++
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l---~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph--~lid~~~ 69 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL---PCELISVDSALIYRGMDIGTAKPSRELLARYPH--RLIDIRD 69 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS---CEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCE--ETSSCBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCcEEeccchhhhcCCCcccCCCCHHHHcCCCE--EEeeccC
Confidence 47799999999999999999987 2356666632 2321000000011234577788 5555554
No 192
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.59 E-value=0.11 Score=60.05 Aligned_cols=43 Identities=9% Similarity=-0.020 Sum_probs=36.3
Q ss_pred CCcHHHHHHHHHHHhcC--CCCCeEEEcCCCchHHHHHHHHHHhH
Q 003070 69 SVSKEDIKLVFEVFLRK--KRRNTVIVGDCLSITDALVFDFMGRV 111 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr--~K~NPVLVGe~gvgktAvVegla~rI 111 (850)
-||++++.++.+.|... ..+-.+|+|.+|+|||.++..++.+.
T Consensus 127 vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 171 (591)
T 1z6t_A 127 VTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH 171 (591)
T ss_dssp CCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH
T ss_pred cccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch
Confidence 49999999999999853 34457889999999999999998764
No 193
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.58 E-value=0.077 Score=56.96 Aligned_cols=38 Identities=16% Similarity=-0.038 Sum_probs=29.0
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
..+++|.|+.|+|||+++..||..+-.......-+|..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 45788999999999999999998876444444445544
No 194
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.42 E-value=0.052 Score=54.99 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.3
Q ss_pred CCeEEEEecCCchHHHHHHHHHHH
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAE 531 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~ 531 (850)
+...+.++||+|+|||+|++.|+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 456888999999999999999994
No 195
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.37 E-value=0.091 Score=59.31 Aligned_cols=91 Identities=13% Similarity=0.081 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCC-CCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHH-HHHHHHH
Q 003070 75 IKLVFEVFLRKK-RRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEM-NLTELKR 152 (850)
Q Consensus 75 irrVieIL~Rr~-K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~-RlkeL~~ 152 (850)
...+..+..... .++.+|.|++|+|||.++..++..+... ..+.+++.++...+. ....+.+.. .+..+..
T Consensus 117 ~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~-----~~~~~v~~v~~~~~~--~~~~~~~~~~~~~~~~~ 189 (440)
T 2z4s_A 117 YHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN-----EPDLRVMYITSEKFL--NDLVDSMKEGKLNEFRE 189 (440)
T ss_dssp HHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH-----CCSSCEEEEEHHHHH--HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh-----CCCCeEEEeeHHHHH--HHHHHHHHcccHHHHHH
Confidence 344444444333 4667788999999999999999887543 124566766543220 000111111 0111111
Q ss_pred HHhccccCCCCeEEEecchhhhhcC
Q 003070 153 KVDSLTSVGGGAIIYTGDLKWTVDQ 177 (850)
Q Consensus 153 ~V~~~~~~~~gvILfIdELh~lvga 177 (850)
... ...-||+|||+|.+.+.
T Consensus 190 ~~~-----~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 190 KYR-----KKVDILLIDDVQFLIGK 209 (440)
T ss_dssp HHT-----TTCSEEEEECGGGGSSC
T ss_pred Hhc-----CCCCEEEEeCcccccCC
Confidence 111 15689999999998763
No 196
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.28 E-value=0.15 Score=56.03 Aligned_cols=72 Identities=11% Similarity=0.193 Sum_probs=44.1
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccc-c-------C--------CCCCchhh---HHH-HhhhCCC
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR-N-------D--------GVSSHSEM---LMG-TLKNYEK 568 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~-~-------~--------~~~~~~~~---l~e-~vr~~P~ 568 (850)
....++.||.|+|||.||..+|..+--.....+.||.... + . ..+.-++. +.+ .+++...
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~ 140 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGAL 140 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCC
Confidence 4567889999999999999999665433344455554321 0 0 01111232 222 3445667
Q ss_pred EEEeeccccccC
Q 003070 569 LVVLVEDIDLAD 580 (850)
Q Consensus 569 sVvlldeiekA~ 580 (850)
.+|++|++--.-
T Consensus 141 ~lIVIDsl~~l~ 152 (349)
T 2zr9_A 141 DIIVIDSVAALV 152 (349)
T ss_dssp SEEEEECGGGCC
T ss_pred CEEEEcChHhhc
Confidence 899999998654
No 197
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.23 E-value=0.14 Score=51.56 Aligned_cols=72 Identities=11% Similarity=0.140 Sum_probs=46.2
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHh-cC-----CCCceEEecCccc-c-C---------C-------------CCCch-
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESV-FG-----STDLLFHIDMRKR-N-D---------G-------------VSSHS- 556 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~l-fg-----s~~~~i~idms~~-~-~---------~-------------~~~~~- 556 (850)
+...+++.||+|+|||.|++.||-.+ .. .....+.|+.... . + + .+...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 44678899999999999999999853 21 1345666664431 0 0 0 01111
Q ss_pred ------hhHHHHhhhCCCEEEeecccccc
Q 003070 557 ------EMLMGTLKNYEKLVVLVEDIDLA 579 (850)
Q Consensus 557 ------~~l~e~vr~~P~sVvlldeiekA 579 (850)
..+.+.+++....+|+||++-..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 12555666667789999999865
No 198
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.20 E-value=0.1 Score=51.96 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 491 DSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 491 eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
+.+.+|++.|.... ..+...+.+.||.|+|||++++.|+..+-...-.++.+++..
T Consensus 5 ~~~~~l~~~~~~~~-~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 5 DRIDFLCKTILAIK-TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp HHHHHHHHHHHTSC-CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred HHHHHHHHHHHHhc-cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 34566777665432 234467889999999999999999998743223344454443
No 199
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.05 E-value=0.053 Score=52.29 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=26.1
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
-+++.|+.|+|||++|++||+.+- ..++.+++.
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~---~~~~~~~~D 37 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLP---EPWLAFGVD 37 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS---SCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC---CCeEEeccc
Confidence 467899999999999999999872 346665543
No 200
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.00 E-value=0.23 Score=56.19 Aligned_cols=98 Identities=13% Similarity=0.107 Sum_probs=54.5
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCC-CCceEEecCccccC-------------C----CCC----chhhH---HHHh
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGS-TDLLFHIDMRKRND-------------G----VSS----HSEML---MGTL 563 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs-~~~~i~idms~~~~-------------~----~~~----~~~~l---~e~v 563 (850)
...++|.|+.|+|||++|..||..+-.. .....-+|+.-|.. . +.+ ..+.+ .+.+
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 4678889999999999999999887543 34444455543311 0 000 11222 2334
Q ss_pred hhCCCEEEeeccccccC--HHHHHHHHhhhccCccCceEEEEecC
Q 003070 564 KNYEKLVVLVEDIDLAD--PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 564 r~~P~sVvlldeiekA~--~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+.+.|.+||+|=-=..+ ..+...|..+-.--.-..+++|+.+.
T Consensus 180 ~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~ 224 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAM 224 (433)
T ss_dssp HHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETT
T ss_pred HhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecc
Confidence 44678899998743322 34444444331111112566666655
No 201
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.97 E-value=0.05 Score=52.73 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=27.1
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
-++|.|++|+|||++|+.||+.+=+..-.+..++++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 367999999999999999999874333345666543
No 202
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.95 E-value=0.24 Score=53.38 Aligned_cols=95 Identities=9% Similarity=0.011 Sum_probs=55.9
Q ss_pred CcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHH
Q 003070 70 VSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTE 149 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~Rlke 149 (850)
|.++-++.+-..+...+-.+-+|.|++|+|||.+++.++..+.... ....++.++.+. . ....++.+.++.
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-----~~~~~~~~~~~~--~--~~~~~ir~~i~~ 99 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN-----YSNMVLELNASD--D--RGIDVVRNQIKD 99 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS-----HHHHEEEECTTS--C--CSHHHHHTHHHH
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-----ccceEEEEcCcc--c--ccHHHHHHHHHH
Confidence 5666666666666555445688999999999999999999886321 123455554331 1 112333333322
Q ss_pred HHHHHhccccCCCCeEEEecchhhhh
Q 003070 150 LKRKVDSLTSVGGGAIIYTGDLKWTV 175 (850)
Q Consensus 150 L~~~V~~~~~~~~gvILfIdELh~lv 175 (850)
+.....- ..++.-|++|||+|.+-
T Consensus 100 ~~~~~~~--~~~~~~viiiDe~~~l~ 123 (340)
T 1sxj_C 100 FASTRQI--FSKGFKLIILDEADAMT 123 (340)
T ss_dssp HHHBCCS--SSCSCEEEEETTGGGSC
T ss_pred HHhhccc--CCCCceEEEEeCCCCCC
Confidence 2211000 11346899999999874
No 203
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.79 E-value=0.14 Score=67.73 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=44.6
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccc-----cC--C---------CCCchh----hHHHHhhhCCC
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR-----ND--G---------VSSHSE----MLMGTLKNYEK 568 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~-----~~--~---------~~~~~~----~l~e~vr~~P~ 568 (850)
..-.+|.||+|+|||.||.++|..........+-||..+. .. + .+...+ .+-..+++...
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~ 1506 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 1506 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCCC
Confidence 3578899999999999999998766544444455554421 00 0 111112 33334566778
Q ss_pred EEEeecccc
Q 003070 569 LVVLVEDID 577 (850)
Q Consensus 569 sVvlldeie 577 (850)
+||++|+|.
T Consensus 1507 ~lVVIDsi~ 1515 (2050)
T 3cmu_A 1507 DVIVVDSVA 1515 (2050)
T ss_dssp SEEEESCGG
T ss_pred CEEEEcChh
Confidence 899999996
No 204
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.72 E-value=0.17 Score=52.55 Aligned_cols=93 Identities=13% Similarity=0.015 Sum_probs=56.8
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcccc---------C---CCCC---c-----h-hhHHHHhhhCC
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRN---------D---GVSS---H-----S-EMLMGTLKNYE 567 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~---------~---~~~~---~-----~-~~l~e~vr~~P 567 (850)
.--++|.|+.|||||++|..+|..+-......+-+|+..+. . .++. | . ..+..++.++|
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~~p 85 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKAAP 85 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHHCC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHhcCC
Confidence 35588999999999999999998776544455555554321 1 1111 1 1 24556566665
Q ss_pred CEEEeecccccc------CHHHHHHHHhhhccCccCceEEEEecC
Q 003070 568 KLVVLVEDIDLA------DPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 568 ~sVvlldeiekA------~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.+|++||+=.. ++..+..+...++.|. =+|.|+|
T Consensus 86 -dlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgi----dVitT~N 125 (228)
T 2r8r_A 86 -SLVLVDELAHTNAPGSRHTKRWQDIQELLAAGI----DVYTTVN 125 (228)
T ss_dssp -SEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTC----EEEEEEE
T ss_pred -CEEEEeCCCCCCcccchhHHHHHHHHHHHcCCC----CEEEEcc
Confidence 69999987642 2334444555666552 2346777
No 205
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.68 E-value=0.14 Score=54.98 Aligned_cols=43 Identities=5% Similarity=0.007 Sum_probs=34.2
Q ss_pred CcHHHHHHHHHHH-hcCCCCCeEEEcCCCchHHHHHHHHHHhHH
Q 003070 70 VSKEDIKLVFEVF-LRKKRRNTVIVGDCLSITDALVFDFMGRVE 112 (850)
Q Consensus 70 gRdeeirrVieIL-~Rr~K~NPVLVGe~gvgktAvVegla~rI~ 112 (850)
|.++.++.+...+ ...+-.+-+|+|++|+|||.+++.++..+.
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 18 HNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp SCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred CCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 6777777777776 544455688999999999999999999764
No 206
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.68 E-value=0.15 Score=50.63 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=26.9
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
+...+++.||+|+|||.+|+.||. --| ...+.++..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~~~--~~v~~i~~~ 54 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-LSG--KKVAYVDTE 54 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-HHC--SEEEEEESS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-HcC--CcEEEEECC
Confidence 445778999999999999999998 333 345555543
No 207
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.67 E-value=0.064 Score=52.11 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=21.3
Q ss_pred EEEEecCCchHHHHHHHHHHHHh
Q 003070 511 WFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.++|.||+|+|||++|+.||+.+
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999987
No 208
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.63 E-value=0.36 Score=54.49 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=30.5
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
...++|.||.|+|||+++..||..+--......-+|..-
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 457888999999999999999998875555555555543
No 209
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.47 E-value=0.045 Score=53.22 Aligned_cols=28 Identities=11% Similarity=0.052 Sum_probs=24.9
Q ss_pred CCCCCeEEEcCCCchHHHHHHHHHHhHH
Q 003070 85 KKRRNTVIVGDCLSITDALVFDFMGRVE 112 (850)
Q Consensus 85 r~K~NPVLVGe~gvgktAvVegla~rI~ 112 (850)
..+++.+|+|++|+|||-++..++..+.
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999885
No 210
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.45 E-value=0.11 Score=51.61 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=29.8
Q ss_pred CCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 506 AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 506 gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
+.+...+.+.||+|+|||++|+.||..+.......+.+|..
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 34556778899999999999999999987222222356543
No 211
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.44 E-value=0.078 Score=55.22 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=24.9
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEec
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID 544 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id 544 (850)
-+++.||+|+|||++|++||+.+ | -.+|..|
T Consensus 3 li~I~G~~GSGKSTla~~La~~~-~--~~~i~~D 33 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET-G--WPVVALD 33 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-C--CCEEECC
T ss_pred EEEEECCCCcCHHHHHHHHHhcC-C--CeEEecc
Confidence 36789999999999999999976 2 3455555
No 212
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.25 E-value=0.068 Score=50.88 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=21.0
Q ss_pred EEEEecCCchHHHHHHHHHHHHh
Q 003070 511 WFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
-+++.||+|+|||++|+.||+.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999886
No 213
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.16 E-value=0.087 Score=57.53 Aligned_cols=76 Identities=14% Similarity=0.144 Sum_probs=49.7
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHHhccccCCCCeE
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKVDSLTSVGGGAI 165 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V~~~~~~~~gvI 165 (850)
+++..+|.|+||+|||.++..++.. ..+. +-++++++... + .....+.++.+..+.+.+++ . + +
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~-~G~~-------VlyIs~~~eE~-v-~~~~~~le~~l~~i~~~l~~----~-~-L 185 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA-LGGK-------DKYATVRFGEP-L-SGYNTDFNVFVDDIARAMLQ----H-R-V 185 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH-HHTT-------SCCEEEEBSCS-S-TTCBCCHHHHHHHHHHHHHH----C-S-E
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh-CCCC-------EEEEEecchhh-h-hhhhcCHHHHHHHHHHHHhh----C-C-E
Confidence 3455689999999999999999876 2222 23555522111 0 11125667778778887775 2 3 9
Q ss_pred EEecchhhhhcC
Q 003070 166 IYTGDLKWTVDQ 177 (850)
Q Consensus 166 LfIdELh~lvga 177 (850)
|+||+|..+...
T Consensus 186 LVIDsI~aL~~~ 197 (331)
T 2vhj_A 186 IVIDSLKNVIGA 197 (331)
T ss_dssp EEEECCTTTC--
T ss_pred EEEecccccccc
Confidence 999999998653
No 214
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.14 E-value=0.092 Score=52.13 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=22.3
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
..+++.||+|+|||++|+.||+.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 478899999999999999999987
No 215
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.91 E-value=0.071 Score=53.44 Aligned_cols=57 Identities=12% Similarity=0.230 Sum_probs=37.7
Q ss_pred CCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhc-CCCCceEEecC
Q 003070 486 VPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVF-GSTDLLFHIDM 545 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lf-gs~~~~i~idm 545 (850)
.-|+.-.|..++++... ..+...++|.|++|+|||++|+.|++.+. ...-.++.+|.
T Consensus 5 ~~~~~~~~~~~~r~~~~---~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 5 ITFHASALTRSERTELR---NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp CCHHHHCCCHHHHHHHH---TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred ccccccccCHHHhhccc---CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 44554455555555533 33345677899999999999999999885 22223566653
No 216
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.89 E-value=0.38 Score=53.06 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=46.6
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC----------------CCCCchhh----HHHHhhhCC
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND----------------GVSSHSEM----LMGTLKNYE 567 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~----------------~~~~~~~~----l~e~vr~~P 567 (850)
+....++.||+|+|||+||..+|..+-......+.||..+... ..+..++. +...++...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~ 139 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGV 139 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcC
Confidence 3467789999999999999999987654444556666543100 01222332 333344566
Q ss_pred CEEEeeccccccC
Q 003070 568 KLVVLVEDIDLAD 580 (850)
Q Consensus 568 ~sVvlldeiekA~ 580 (850)
..+|++|.|-.-.
T Consensus 140 ~dlvVIDSi~~l~ 152 (356)
T 3hr8_A 140 VDLIVVDSVAALV 152 (356)
T ss_dssp CSEEEEECTTTCC
T ss_pred CCeEEehHhhhhc
Confidence 7799999887554
No 217
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.87 E-value=0.037 Score=65.11 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=21.1
Q ss_pred CeEEEcCCCchHHHHHHHHHHhHH
Q 003070 89 NTVIVGDCLSITDALVFDFMGRVE 112 (850)
Q Consensus 89 NPVLVGe~gvgktAvVegla~rI~ 112 (850)
|.+|+|+||+|||.+++.++....
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~ 352 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAP 352 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCS
T ss_pred ceEEECCCchHHHHHHHHHHHhCC
Confidence 899999999999999988876653
No 218
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.85 E-value=0.062 Score=58.95 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=27.6
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
--+++.||||+|||+||+.||+.+ ...+|..|--
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l---~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF---PLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS---CEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC---CCcEEccccc
Confidence 468899999999999999999987 2356777643
No 219
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.82 E-value=0.11 Score=50.61 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=29.2
Q ss_pred CCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEec
Q 003070 506 AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID 544 (850)
Q Consensus 506 gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id 544 (850)
.++...++|.|++|+|||++++.||+.+-.....++.+|
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 344567889999999999999999998854333344454
No 220
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.81 E-value=0.079 Score=51.29 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=21.5
Q ss_pred EEEEecCCchHHHHHHHHHHHHh
Q 003070 511 WFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.++|.||+|+|||++|+.||+.+
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999976
No 221
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.75 E-value=0.69 Score=50.31 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=25.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCC
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGS 536 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs 536 (850)
.+...+.|+||+|+|||++++.||.++--.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 345788999999999999999999877543
No 222
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.70 E-value=0.12 Score=50.12 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=28.1
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEec
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID 544 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id 544 (850)
+.-.+.|.|++|+|||++++.||+.+....-.++.+|
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 3456789999999999999999998853223456555
No 223
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.54 E-value=0.1 Score=50.70 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=21.8
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.-++|.|++|+|||++|+.||+.+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999976
No 224
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.53 E-value=0.34 Score=53.21 Aligned_cols=83 Identities=11% Similarity=0.093 Sum_probs=56.2
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEec-CccccC----------C----------CCCchhhHHHHhhhCC
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID-MRKRND----------G----------VSSHSEMLMGTLKNYE 567 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id-ms~~~~----------~----------~~~~~~~l~e~vr~~P 567 (850)
...+++.||+|+|||+|.++|+.++=- ....|.++ ..++.. . ..+..+.|..+++.+|
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~p 253 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKP 253 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCC
Confidence 357889999999999999999987643 45566665 222210 0 0012245777888888
Q ss_pred CEEEeeccccccCHHHHHHHHhhhccCcc
Q 003070 568 KLVVLVEDIDLADPQFIKILADGFETENF 596 (850)
Q Consensus 568 ~sVvlldeiekA~~~v~~~l~q~~d~G~l 596 (850)
. +++++|+..| .+.. +++++.+|..
T Consensus 254 d-~~l~~e~r~~--~~~~-~l~~l~~g~~ 278 (361)
T 2gza_A 254 T-RILLAELRGG--EAYD-FINVAASGHG 278 (361)
T ss_dssp S-EEEESCCCST--HHHH-HHHHHHTTCC
T ss_pred C-EEEEcCchHH--HHHH-HHHHHhcCCC
Confidence 6 7888998764 4555 5677888854
No 225
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.49 E-value=0.38 Score=51.84 Aligned_cols=28 Identities=14% Similarity=0.024 Sum_probs=24.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
++.-++.++||+|+|||+|.+.|+.++-
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 4567889999999999999999998763
No 226
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.38 E-value=0.35 Score=53.26 Aligned_cols=72 Identities=14% Similarity=0.154 Sum_probs=45.3
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccc-cC---------------CCCCchhhH----HHHhhhCCC
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR-ND---------------GVSSHSEML----MGTLKNYEK 568 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~-~~---------------~~~~~~~~l----~e~vr~~P~ 568 (850)
....++.||.|+|||.+|..||..+-......+.||.... +. ..+...+.+ ...+++..+
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~ 142 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 142 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCC
Confidence 3467889999999999999999776543345566665321 00 011112322 223456778
Q ss_pred EEEeeccccccC
Q 003070 569 LVVLVEDIDLAD 580 (850)
Q Consensus 569 sVvlldeiekA~ 580 (850)
.+|++|.+-.-.
T Consensus 143 ~lVVIDsl~~l~ 154 (356)
T 1u94_A 143 DVIVVDSVAALT 154 (356)
T ss_dssp SEEEEECGGGCC
T ss_pred CEEEEcCHHHhc
Confidence 899999987543
No 227
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.31 E-value=0.084 Score=53.88 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=27.4
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
.-++|.||+|+|||+||.+||+..+ .+|.-|.-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~----~iIsdDs~ 67 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH----RLIADDRV 67 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC----EEEESSEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC----eEEecchh
Confidence 4688999999999999999998863 67776643
No 228
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.13 E-value=0.14 Score=50.77 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=21.3
Q ss_pred EEEEecCCchHHHHHHHHHHHHh
Q 003070 511 WFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
-+++.|++|+|||++|+.||+.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999987
No 229
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.03 E-value=0.69 Score=53.29 Aligned_cols=98 Identities=11% Similarity=0.125 Sum_probs=54.0
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhc--CCCCceEEecCccc---------cC--CCC--------CchhhHH---HHhh
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVF--GSTDLLFHIDMRKR---------ND--GVS--------SHSEMLM---GTLK 564 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lf--gs~~~~i~idms~~---------~~--~~~--------~~~~~l~---e~vr 564 (850)
...++|+|++|+|||+++..||..+- |..-.+|..|.-.. .. .-+ ..++.+. +.++
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999997765 44445555554110 00 000 0112222 2234
Q ss_pred hCCCEEEeeccccccC--HHHHHHHHhhhccCccCceEEEEecC
Q 003070 565 NYEKLVVLVEDIDLAD--PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 565 ~~P~sVvlldeiekA~--~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.+.|.+||+|-.=..+ ..+...+.++.+--.-..+|+|+-+.
T Consensus 181 ~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~ 224 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDAS 224 (504)
T ss_dssp HTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETT
T ss_pred HCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecc
Confidence 4778999999754443 44555554443310112445666554
No 230
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=91.03 E-value=0.56 Score=51.77 Aligned_cols=70 Identities=19% Similarity=0.129 Sum_probs=42.2
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEec--CccccC--------------CCCCchhh----HHHHhhhCCCE
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID--MRKRND--------------GVSSHSEM----LMGTLKNYEKL 569 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id--ms~~~~--------------~~~~~~~~----l~e~vr~~P~s 569 (850)
...++.||.|+|||.+|..+|..+-......+.|| |+.... ..+...+. +...++...+.
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~ 154 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAID 154 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCC
Confidence 45667999999999999999876542223444444 432100 01112233 33334557788
Q ss_pred EEeecccccc
Q 003070 570 VVLVEDIDLA 579 (850)
Q Consensus 570 VvlldeiekA 579 (850)
+|++|.|---
T Consensus 155 lVVIDsl~~l 164 (366)
T 1xp8_A 155 VVVVDSVAAL 164 (366)
T ss_dssp EEEEECTTTC
T ss_pred EEEEeChHHh
Confidence 9999988743
No 231
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.97 E-value=0.44 Score=54.81 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=24.9
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCC
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGS 536 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs 536 (850)
+...++|+||+|+|||+|++.||.++--.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 45688999999999999999999887543
No 232
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=90.89 E-value=0.82 Score=52.24 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=29.2
Q ss_pred HHHHHhcC-CCCCeEEEcCCCchHHHHHHHHHHhHHh
Q 003070 78 VFEVFLRK-KRRNTVIVGDCLSITDALVFDFMGRVER 113 (850)
Q Consensus 78 VieIL~Rr-~K~NPVLVGe~gvgktAvVegla~rI~~ 113 (850)
+|+.|.-- +...-+|+|.+|+|||.++..++..+..
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 78888632 4556889999999999999999988775
No 233
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.88 E-value=0.11 Score=56.29 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=27.2
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
-+++.||||+|||.||..||+.+ + ..+|+.|-.
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~-~--~~iis~Ds~ 44 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL-P--VELISVDSA 44 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS-C--EEEEECCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhC-C--CcEEecccc
Confidence 56789999999999999999986 2 457777744
No 234
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=90.85 E-value=0.19 Score=48.37 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=26.8
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
...+++.||.|+|||++++.||..+ | .+.+|...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~-g----~~~i~~d~ 41 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL-H----AAFLDGDF 41 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH-T----CEEEEGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh-C----cEEEeCcc
Confidence 3567899999999999999999876 3 45566543
No 235
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=90.69 E-value=0.6 Score=58.34 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=28.8
Q ss_pred CCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHH
Q 003070 487 PWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAE 531 (850)
Q Consensus 487 ~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~ 531 (850)
+|-++.+..|.+.+... .+...+.+.||-|+|||+||++++.
T Consensus 131 VGRe~eLeeL~elL~~~---d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL---RPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC---CSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc---CCCeEEEEEcCCCccHHHHHHHHHH
Confidence 44444555555555421 1245778999999999999999984
No 236
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.58 E-value=0.12 Score=50.80 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.9
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
..++|.|++|+|||++|+.||+.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999976
No 237
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=90.58 E-value=0.12 Score=50.38 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=27.0
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
...+.+.||.|+|||++++.||.. ++ ...|.+|..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~-~~--~g~i~i~~d 43 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL-PG--VPKVHFHSD 43 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC-SS--SCEEEECTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc-cC--CCeEEEccc
Confidence 356889999999999999999987 33 234666644
No 238
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.57 E-value=0.33 Score=48.74 Aligned_cols=89 Identities=13% Similarity=0.166 Sum_probs=52.5
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCce--EE--ecCccccC----CCCC------c---hhhHHHHhhhCCCEEEee
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLL--FH--IDMRKRND----GVSS------H---SEMLMGTLKNYEKLVVLV 573 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~--i~--idms~~~~----~~~~------~---~~~l~e~vr~~P~sVvll 573 (850)
-.++.||.|+|||+.+..+|.-+-+..... +. +|-. |.+ +.-| . ...+.+.+. .+|.||++
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r-~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~-~~~dvViI 87 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNR-YSKEDVVSHMGEKEQAVAIKNSREILKYFE-EDTEVIAI 87 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--------CEEECTTSCEEECEEESSSTHHHHHCC-TTCSEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCcc-chHHHHHhhcCCceeeEeeCCHHHHHHHHh-ccCCEEEE
Confidence 456799999999999988887664333333 33 3422 211 0001 0 123444444 36899999
Q ss_pred ccccccCHHHHHHHHhhhccCccCceEEEEec
Q 003070 574 EDIDLADPQFIKILADGFETENFGKVIFVLTK 605 (850)
Q Consensus 574 deiekA~~~v~~~l~q~~d~G~l~n~Iii~Ts 605 (850)
||+-.-+++....|....+.| ..||+|-
T Consensus 88 DEaqfl~~~~v~~l~~l~~~~----~~Vi~~G 115 (191)
T 1xx6_A 88 DEVQFFDDEIVEIVNKIAESG----RRVICAG 115 (191)
T ss_dssp CSGGGSCTHHHHHHHHHHHTT----CEEEEEE
T ss_pred ECCCCCCHHHHHHHHHHHhCC----CEEEEEe
Confidence 999988777777666655553 4556654
No 239
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.56 E-value=0.12 Score=51.76 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=22.3
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHh
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.-.+.|+||+|+|||+|++.|++.+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3467899999999999999999886
No 240
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=90.54 E-value=0.18 Score=50.07 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=26.9
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
.-.+.+.||.|+|||++++.||..+ | .+.+|...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~-g----~~~i~~d~ 62 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET-G----LEFAEADA 62 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH-C----CEEEEGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh-C----CeEEcccc
Confidence 3567789999999999999999987 3 45566443
No 241
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.48 E-value=0.13 Score=50.38 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=21.0
Q ss_pred EEEEecCCchHHHHHHHHHHHHh
Q 003070 511 WFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.+.|.|++|+|||++|+.||+.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 36799999999999999999976
No 242
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.46 E-value=0.12 Score=49.49 Aligned_cols=31 Identities=19% Similarity=0.142 Sum_probs=24.0
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecC
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDM 545 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idm 545 (850)
-++|.||+|+|||++|+.||+..+ .+..|++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~----~~~~i~~ 34 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNP----GFYNINR 34 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHST----TEEEECH
T ss_pred EEEEecCCCCCHHHHHHHHHhhcC----CcEEecH
Confidence 467999999999999999998422 3455554
No 243
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=90.46 E-value=0.3 Score=52.15 Aligned_cols=43 Identities=16% Similarity=0.237 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhh--CCCCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 492 SIHSIVEVLVECKS--AKKATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 492 ai~~Ia~av~~~r~--gk~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
.+..|++.|..... .++...+.+.||+|+|||++|+.|++.+-
T Consensus 12 ~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 12 TIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp HHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 45566666655322 23345678999999999999999999884
No 244
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.41 E-value=0.26 Score=53.57 Aligned_cols=59 Identities=10% Similarity=0.030 Sum_probs=43.2
Q ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 475 RSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 475 l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
..-|.+.|.-. .+..+++..+...+......+.-..+.+.||+|+|||++|+.|+.++-
T Consensus 59 y~pl~rll~~~-~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 59 YLPLSRLLSFY-VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh-hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34455555444 466777788887777655444445778999999999999999999874
No 245
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.40 E-value=0.46 Score=51.46 Aligned_cols=72 Identities=13% Similarity=0.107 Sum_probs=44.8
Q ss_pred HHHHHHHHhccCCCchH---HHHHHHHHHHH----hh-----hC-----CCCeEEEEecCCchHHHHHHHHHHHHhcCCC
Q 003070 475 RSDLYKVLQENVPWQFD---SIHSIVEVLVE----CK-----SA-----KKATWFLLQGNDTIGKRRLALSIAESVFGST 537 (850)
Q Consensus 475 l~~L~~~L~~~V~gQ~e---ai~~Ia~av~~----~r-----~g-----k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~ 537 (850)
.+.|.+.+++++.+++- ....+.+.+.. .. .+ ++...++|.||.|+|||+++..||..+-...
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g 133 (320)
T 1zu4_A 54 VLKVSNLVRKKTKRDTSFENIKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELG 133 (320)
T ss_dssp HHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 45677777777777532 22222233322 11 11 2346889999999999999999998875444
Q ss_pred CceEEecCc
Q 003070 538 DLLFHIDMR 546 (850)
Q Consensus 538 ~~~i~idms 546 (850)
...+-+|..
T Consensus 134 ~kVllid~D 142 (320)
T 1zu4_A 134 YKVLIAAAD 142 (320)
T ss_dssp CCEEEEECC
T ss_pred CeEEEEeCC
Confidence 455445544
No 246
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=90.39 E-value=0.13 Score=60.94 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=35.2
Q ss_pred ccCCCchHHHHHHHHHHHHh-hhCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEec
Q 003070 484 ENVPWQFDSIHSIVEVLVEC-KSAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID 544 (850)
Q Consensus 484 ~~V~gQ~eai~~Ia~av~~~-r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id 544 (850)
.++.||...|..-.++-+.. |++-....++|.|++|+|||++|++||+.++...-.++.+|
T Consensus 26 ~~~~~~~~~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 26 TNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp --------CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred ccccccccCCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 57899986655444432211 12223456789999999999999999999974444566665
No 247
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.38 E-value=0.11 Score=55.96 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=23.9
Q ss_pred CCCeEEEcCCCchHHHHHHHHHHhHH
Q 003070 87 RRNTVIVGDCLSITDALVFDFMGRVE 112 (850)
Q Consensus 87 K~NPVLVGe~gvgktAvVegla~rI~ 112 (850)
.+|.+|.|++|+|||-++..++..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57889999999999999999999876
No 248
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=90.35 E-value=0.13 Score=49.23 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=21.1
Q ss_pred EEEEecCCchHHHHHHHHHHHHh
Q 003070 511 WFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.+.+.||.|+|||++++.||..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999987
No 249
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=90.34 E-value=0.13 Score=50.25 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=21.8
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
-.+.++||+|+|||+|++.|+..+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468899999999999999999875
No 250
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.32 E-value=0.14 Score=49.68 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.2
Q ss_pred EEEEecCCchHHHHHHHHHHHHh
Q 003070 511 WFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.++|.|++|+|||++|+.||+.+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999887
No 251
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.24 E-value=0.13 Score=55.94 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=26.6
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
-+++.||||+|||.||..||+.+ + ..+|..|-.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~-~--~~iis~Ds~ 37 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL-N--GEVISGDSM 37 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT-T--EEEEECCGG
T ss_pred EEEEECCCcCCHHHHHHHHHHhC-c--cceeecCcc
Confidence 46789999999999999999986 2 356777744
No 252
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.20 E-value=0.82 Score=51.59 Aligned_cols=36 Identities=22% Similarity=0.084 Sum_probs=26.6
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecC
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDM 545 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idm 545 (850)
..++|.|++|+|||++|..||..+-......+-+|+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 578899999999999999999877432233333443
No 253
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.19 E-value=0.24 Score=51.20 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=27.6
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
...++|.||.|+|||++|+.||+.+.+ ..+.+|...
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~---~~~~~~~D~ 67 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQG---NIVIIDGDS 67 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTT---CCEEECGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCC---CcEEEecHH
Confidence 467889999999999999999998732 345555443
No 254
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.09 E-value=0.13 Score=51.22 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=21.6
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
-.++|.||+|+|||++++.|++.+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 357789999999999999999976
No 255
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=90.07 E-value=0.6 Score=53.89 Aligned_cols=40 Identities=8% Similarity=-0.022 Sum_probs=33.8
Q ss_pred CcHHHHHHHHHHHhcCC---CCCeEEEcCCCchHHHHHHHHHH
Q 003070 70 VSKEDIKLVFEVFLRKK---RRNTVIVGDCLSITDALVFDFMG 109 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~---K~NPVLVGe~gvgktAvVegla~ 109 (850)
||++++..+.+.|.... -+-..|+|.+|+|||.++..++.
T Consensus 132 GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 89999999999997642 23467899999999999988885
No 256
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.98 E-value=0.15 Score=49.42 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=25.0
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
.++|.|++|+|||++|+.||+.+ | +..+|+.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l-~----~~~i~~d 36 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL-G----FKKLSTG 36 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-T----CEEECHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-C----CeEecHH
Confidence 57899999999999999999876 3 4455543
No 257
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=89.95 E-value=0.48 Score=47.81 Aligned_cols=97 Identities=11% Similarity=0.027 Sum_probs=50.9
Q ss_pred EEEEecCCchHHHHHHHHHHHHh--cCC---C-Cce--EEecCccccC------------C-CCC-chhhHHHHh--hhC
Q 003070 511 WFLLQGNDTIGKRRLALSIAESV--FGS---T-DLL--FHIDMRKRND------------G-VSS-HSEMLMGTL--KNY 566 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~l--fgs---~-~~~--i~idms~~~~------------~-~~~-~~~~l~e~v--r~~ 566 (850)
-.||.|+.|+|||.+|.+++... ++. . ..+ ..+|.-..+. . +.. ....+.+-+ .+.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 35699999999999999976543 332 1 222 4445211110 0 000 112333321 345
Q ss_pred CCEEEeecccccc---CHHHH--HHHHhhhccCccCceEEEEecCC
Q 003070 567 EKLVVLVEDIDLA---DPQFI--KILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 567 P~sVvlldeiekA---~~~v~--~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
...||++||.... ..... .-++..|+..+=..--||++++.
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 5789999999865 11111 12555666666444444555553
No 258
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.90 E-value=0.37 Score=51.74 Aligned_cols=28 Identities=14% Similarity=0.130 Sum_probs=24.4
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCC
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGS 536 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs 536 (850)
...+.|+||+|+|||++++.||-++--+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4688899999999999999999887543
No 259
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.89 E-value=0.15 Score=51.31 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=25.1
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
-++|.||+|+|||++|+.||+.+ | +..+|++
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l-~----~~~i~~d 37 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKY-Q----LAHISAG 37 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH-C----CEECCHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-C----CceecHH
Confidence 47799999999999999999986 2 3556643
No 260
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.88 E-value=0.15 Score=49.61 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=21.8
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
..++|.|++|+|||++|+.||+.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999876
No 261
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=89.85 E-value=0.17 Score=49.68 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=22.3
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHh
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
...+.++||+|+|||+|++.|+..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3478899999999999999999984
No 262
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=89.85 E-value=0.85 Score=49.13 Aligned_cols=146 Identities=10% Similarity=0.133 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhcCCCCC-eEEEcCCCchHHHHHHHHHHhHHhCCCCc---c---------c--CCcEEEEeeccccccc
Q 003070 72 KEDIKLVFEVFLRKKRRN-TVIVGDCLSITDALVFDFMGRVERGDVPQ---E---------L--KQTHVIKFHFAPVTLR 136 (850)
Q Consensus 72 deeirrVieIL~Rr~K~N-PVLVGe~gvgktAvVegla~rI~~G~VP~---~---------L--kg~~visLdl~~l~~~ 136 (850)
++.++++...+..++-.+ -+|.|++|+|||.+++.+|+.+....... . . ....++.++-..- -.
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CC
Confidence 467777777777655455 67789999999999999999886433110 0 0 0012333332100 00
Q ss_pred ccChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcCCccCCCCCCCCCccccCCchhhhhHHhhhhcccccCCCC
Q 003070 137 FMKKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQESNNNNNFNGEIASCYNPINHLVSEVGKLVSDCNSASS 216 (850)
Q Consensus 137 ~~~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvgag~~~g~~~~~~g~~~~~~a~~~~V~El~nLLkp~l~~ar 216 (850)
..+-++ +.++.+.+......++.-|++|||+|.+-.. +.+ .|||- +|...
T Consensus 87 ~~~i~~----ir~l~~~~~~~~~~~~~kvviIdead~l~~~------------------a~n-------aLLk~-lEep~ 136 (334)
T 1a5t_A 87 TLGVDA----VREVTEKLNEHARLGGAKVVWVTDAALLTDA------------------AAN-------ALLKT-LEEPP 136 (334)
T ss_dssp SBCHHH----HHHHHHHTTSCCTTSSCEEEEESCGGGBCHH------------------HHH-------HHHHH-HTSCC
T ss_pred CCCHHH----HHHHHHHHhhccccCCcEEEEECchhhcCHH------------------HHH-------HHHHH-hcCCC
Confidence 011222 3455555543211245789999999987431 221 23442 22223
Q ss_pred CeEEEEecccHHHHHhhhhcCCcccccccceeeecCCCC
Q 003070 217 TRVWLMATASYQTYMKCQMRQPPLEIQWALQAVSIPSGG 255 (850)
Q Consensus 217 G~lwlIGatT~eeY~K~iekdPaLEr~W~LQ~V~Vps~~ 255 (850)
....+|.+|+.-+ .-.|++-+| .|.+.++.++
T Consensus 137 ~~~~~Il~t~~~~-----~l~~ti~SR--c~~~~~~~~~ 168 (334)
T 1a5t_A 137 AETWFFLATREPE-----RLLATLRSR--CRLHYLAPPP 168 (334)
T ss_dssp TTEEEEEEESCGG-----GSCHHHHTT--SEEEECCCCC
T ss_pred CCeEEEEEeCChH-----hCcHHHhhc--ceeeeCCCCC
Confidence 4577777765421 235667665 4777776554
No 263
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=89.85 E-value=0.16 Score=48.55 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=20.6
Q ss_pred EEEecCCchHHHHHHHHHHHHh
Q 003070 512 FLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
++|.|++|+|||++|+.||+.+
T Consensus 5 I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999976
No 264
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.79 E-value=0.16 Score=49.83 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=27.3
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
-.+++.|+.|+|||++|+.||+.++| +..+|+..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g----~~~id~d~ 44 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDG----FQHLEVGK 44 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTT----EEEEEHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCC----CEEeeHHH
Confidence 46889999999999999999998654 55566543
No 265
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.79 E-value=0.16 Score=49.19 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=24.8
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
-++|.|++|+|||++|+.||+.+ | +..+|+.
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~-~----~~~i~~d 35 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY-G----YTHLSAG 35 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-C----CEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-C----CeEEeHH
Confidence 47899999999999999999876 2 3455554
No 266
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.76 E-value=0.16 Score=49.04 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.4
Q ss_pred EEEecCCchHHHHHHHHHHHHh
Q 003070 512 FLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
+++.||.|+|||++|+.||+.+
T Consensus 7 i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999987
No 267
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=89.74 E-value=0.3 Score=52.10 Aligned_cols=40 Identities=10% Similarity=-0.102 Sum_probs=35.9
Q ss_pred CcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhH
Q 003070 70 VSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRV 111 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI 111 (850)
|+++.++.+...|.. ++|.+|+|+||+|||.+++.++..+
T Consensus 31 g~~~~~~~l~~~l~~--~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 31 GQKYMINRLLIGICT--GGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp SCHHHHHHHHHHHHH--TCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHc--CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 788999988888876 6799999999999999999999876
No 268
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.69 E-value=0.16 Score=49.57 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=26.0
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
-++|.|++|+|||++|+.||+.+ | +..+|+..
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l-~----~~~i~~d~ 45 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY-G----FTHLSTGE 45 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH-T----CEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-C----CeEEcHHH
Confidence 57799999999999999999987 2 45566543
No 269
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.60 E-value=0.18 Score=48.21 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=22.2
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.++++.|+.|+|||++|+.||+.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999999999986
No 270
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.44 E-value=0.18 Score=49.21 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=20.6
Q ss_pred EEEecCCchHHHHHHHHHHHHh
Q 003070 512 FLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
+.|.|++|+|||++|+.|++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999987
No 271
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.41 E-value=0.17 Score=49.92 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=21.8
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.-++|.|++|+|||++|+.||+.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999999999976
No 272
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.30 E-value=0.16 Score=51.30 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.6
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
-.++|.||+|+|||++|+.||+.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999876
No 273
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=89.26 E-value=0.73 Score=51.35 Aligned_cols=48 Identities=17% Similarity=0.345 Sum_probs=32.0
Q ss_pred hHHHHhhhCCCEEEeecccccc-CHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 558 MLMGTLKNYEKLVVLVEDIDLA-DPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 558 ~l~e~vr~~P~sVvlldeiekA-~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
.|+.|+-.+|. |+||||---+ |+..+..+.+.|.+= ..++.+|+++..
T Consensus 165 alARAL~~~P~-lLLLDEPts~LD~~~~~~l~~~l~~~-~~~~tvi~vtHd 213 (390)
T 3gd7_A 165 CLARSVLSKAK-ILLLDEPSAHLDPVTYQIIRRTLKQA-FADCTVILCEAR 213 (390)
T ss_dssp HHHHHHHTTCC-EEEEESHHHHSCHHHHHHHHHHHHTT-TTTSCEEEECSS
T ss_pred HHHHHHhcCCC-EEEEeCCccCCCHHHHHHHHHHHHHH-hCCCEEEEEEcC
Confidence 48888888986 9999997644 677777776666542 224445555553
No 274
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.21 E-value=0.21 Score=50.14 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.9
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.-++|.|++|+|||++|+.||+.+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999987
No 275
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.18 E-value=0.19 Score=48.58 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=21.3
Q ss_pred EEEEecCCchHHHHHHHHHHHHh
Q 003070 511 WFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
-++|.|++|+|||++|+.||+.+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999976
No 276
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.17 E-value=0.22 Score=48.26 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.7
Q ss_pred EEEecCCchHHHHHHHHHHHHh
Q 003070 512 FLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
+.|.|++|+|||++|+.||+.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999987
No 277
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.16 E-value=0.21 Score=50.71 Aligned_cols=99 Identities=10% Similarity=0.081 Sum_probs=61.9
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCC--ceEEecCc--cccC-------------CCCCc----------------
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTD--LLFHIDMR--KRND-------------GVSSH---------------- 555 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~--~~i~idms--~~~~-------------~~~~~---------------- 555 (850)
.+-+++.+++|.|||.+|-.+|--..|... .|+.|.=. .+.+ .+.+|
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 477888899999999999999976666544 44544322 1110 00111
Q ss_pred -hhhHHHHhhhCCCEEEeecccccc---CHHHHHHHHhhhccCccCceEEEEecCCC
Q 003070 556 -SEMLMGTLKNYEKLVVLVEDIDLA---DPQFIKILADGFETENFGKVIFVLTKGDS 608 (850)
Q Consensus 556 -~~~l~e~vr~~P~sVvlldeiekA---~~~v~~~l~q~~d~G~l~n~Iii~Tsn~~ 608 (850)
...+.+.+....|.+|+||||=-| ...-..-+++.+. .|..+.=+|+|.|..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~-~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALN-ARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHH-TSCTTCEEEEECSSC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHH-hCcCCCEEEEECCCC
Confidence 113555566688999999999433 2222223445554 367788899999954
No 278
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.15 E-value=0.19 Score=49.72 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.9
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
..+.|.|++|+|||++|+.||+.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999975
No 279
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.13 E-value=0.18 Score=51.27 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.9
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.-++|.|++|+|||++|+.||+.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999986
No 280
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.08 E-value=0.19 Score=47.75 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=20.6
Q ss_pred EEEecCCchHHHHHHHHHHHHh
Q 003070 512 FLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
++|.|++|+|||++|+.||+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999976
No 281
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=88.97 E-value=0.66 Score=51.59 Aligned_cols=35 Identities=14% Similarity=0.041 Sum_probs=27.1
Q ss_pred hHHHHhhhCCCEEEeecccccc-CHHHHHHHHhhhcc
Q 003070 558 MLMGTLKNYEKLVVLVEDIDLA-DPQFIKILADGFET 593 (850)
Q Consensus 558 ~l~e~vr~~P~sVvlldeiekA-~~~v~~~l~q~~d~ 593 (850)
.|+.|+-.+|. |+||||=--+ |+..+..+.+.|.+
T Consensus 143 aiArAL~~~P~-lLLLDEPts~LD~~~~~~l~~~l~~ 178 (381)
T 3rlf_A 143 AIGRTLVAEPS-VFLLDEPLSNLDAALRVQMRIEISR 178 (381)
T ss_dssp HHHHHHHHCCS-EEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC-EEEEECCCcCCCHHHHHHHHHHHHH
Confidence 48999999997 9999998765 77766666666543
No 282
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.90 E-value=0.15 Score=49.18 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=17.0
Q ss_pred EEEEecCCchHHHHHHHHHHHHh
Q 003070 511 WFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
-++|.|++|+|||++|+.||+.+
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999876
No 283
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=88.84 E-value=0.42 Score=56.38 Aligned_cols=69 Identities=9% Similarity=0.029 Sum_probs=44.3
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchhhHHHHhhhCCCEEEeeccccccCHHHHH
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSEMLMGTLKNYEKLVVLVEDIDLADPQFIK 585 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~~l~e~vr~~P~sVvlldeiekA~~~v~~ 585 (850)
-+|++||+|+|||++..++...+......++-.-.+. ..++.|.+.|......|+=+-.-.+.++.++.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN------~AvD~i~erL~~~~~~ilRlG~~~r~~~~~~~ 275 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN------IAVDNLVERLALCKQRILRLGHPARLLESIQQ 275 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH------HHHHHHHHHHHHTTCCEEECSCCSSCCHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch------HHHHHHHHHHHhcCCceEEecchhhhhhhhhh
Confidence 5689999999999876666555543333333222221 24788888888777777776665565555543
No 284
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=88.81 E-value=0.2 Score=49.16 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=23.1
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcC
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFG 535 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfg 535 (850)
..+.|+||+|+|||++++.|+..+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 46789999999999999999998743
No 285
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.70 E-value=0.21 Score=49.76 Aligned_cols=22 Identities=32% Similarity=0.295 Sum_probs=20.4
Q ss_pred EEEecCCchHHHHHHHHHHHHh
Q 003070 512 FLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
++|.||+|+|||++|+.||+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999876
No 286
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.59 E-value=0.26 Score=48.67 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=22.0
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
..+.|.|++|+|||++|+.||+.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999976
No 287
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.54 E-value=0.21 Score=50.20 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=21.4
Q ss_pred EEEEecCCchHHHHHHHHHHHHh
Q 003070 511 WFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
-++|.|++|+|||++|+.||+.+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57889999999999999999987
No 288
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.52 E-value=0.15 Score=50.49 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEecCCchHHHHHHHHHHHHh
Q 003070 511 WFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.+.|.|++|+|||++|+.|++.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999987
No 289
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=88.43 E-value=1.4 Score=48.08 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=28.7
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCce--EEecC
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLL--FHIDM 545 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~--i~idm 545 (850)
...-+.|+|+.|+|||.++..|+..+......+ +..|.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 346788999999999999999999886554444 44443
No 290
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.42 E-value=0.22 Score=49.82 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=20.7
Q ss_pred EEEecCCchHHHHHHHHHHHHh
Q 003070 512 FLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
++|.||+|+|||++|+.||+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999976
No 291
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.42 E-value=0.22 Score=50.49 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=24.1
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEecC
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDM 545 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idm 545 (850)
++|.||+|+|||++|+.||+.+ | +..+++
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l-g----~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY-S----LAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH-T----CEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHh-C----CeEEch
Confidence 6799999999999999999976 3 345555
No 292
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.41 E-value=0.19 Score=49.35 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=22.0
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
..+.|.|++|+|||++|+.||+.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999987
No 293
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.36 E-value=0.23 Score=48.12 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.5
Q ss_pred EEEecCCchHHHHHHHHHHHHh
Q 003070 512 FLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
+++.|+.|+|||++|+.||+.+
T Consensus 5 I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999999976
No 294
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.34 E-value=0.24 Score=54.32 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=24.9
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEec
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID 544 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id 544 (850)
-+.+.||+|+|||++|+.||+.+ + -.+|..|
T Consensus 9 lI~I~GptgSGKTtla~~La~~l-~--~~iis~D 39 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF-N--GEIISGD 39 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT-T--EEEEECC
T ss_pred eEEEECCCcCcHHHHHHHHHHHc-C--Cceeccc
Confidence 57799999999999999999987 2 2455554
No 295
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=88.28 E-value=0.21 Score=48.93 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.9
Q ss_pred EEEEecCCchHHHHHHHHHHHHh
Q 003070 511 WFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.+.|+||+|+|||+|++.|+..+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 36789999999999999999876
No 296
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.27 E-value=0.92 Score=50.20 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=28.7
Q ss_pred hHHHHhhhCCCEEEeecccccc-CHHHHHHHHhhhcc
Q 003070 558 MLMGTLKNYEKLVVLVEDIDLA-DPQFIKILADGFET 593 (850)
Q Consensus 558 ~l~e~vr~~P~sVvlldeiekA-~~~v~~~l~q~~d~ 593 (850)
.|+.|+-.+|. |+|+||---| |+..+..+++.|.+
T Consensus 173 aIArAL~~~P~-lLLlDEPTs~LD~~~~~~i~~lL~~ 208 (366)
T 3tui_C 173 AIARALASNPK-VLLCDQATSALDPATTRSILELLKD 208 (366)
T ss_dssp HHHHHTTTCCS-EEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-EEEEECCCccCCHHHHHHHHHHHHH
Confidence 48999999997 9999998866 78777777777654
No 297
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.26 E-value=0.22 Score=49.74 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=20.3
Q ss_pred EEEecCCchHHHHHHHHHHHHh
Q 003070 512 FLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
++|.||+|+|||++|+.||+.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999876
No 298
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=88.21 E-value=0.57 Score=44.74 Aligned_cols=39 Identities=8% Similarity=0.015 Sum_probs=30.9
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecc
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFA 131 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~ 131 (850)
..++.+|+|++|+|||-++..++..+.. +|.+++.++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-------~g~~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-------AGKNAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-------TTCCEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-------cCCcEEEEcHH
Confidence 5678899999999999999999988763 25566666644
No 299
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=88.21 E-value=0.37 Score=46.80 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=27.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCc
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDL 539 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~ 539 (850)
++...+.+.||.|+|||+|.+.|+..+ +....
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~ 62 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGN 62 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCe
Confidence 445688899999999999999999999 65443
No 300
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=88.06 E-value=0.25 Score=50.57 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=22.0
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
..+++.||+|+|||++++.||+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999999999876
No 301
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=88.00 E-value=0.58 Score=51.62 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=24.9
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCC
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGS 536 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs 536 (850)
+...+.|+||+|+|||++++.||-++--.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 34688999999999999999999887543
No 302
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=87.99 E-value=1.3 Score=45.89 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=57.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhc--CCCCceEEecCcc----ccC------CCCCchh------hHHHHhhh---
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVF--GSTDLLFHIDMRK----RND------GVSSHSE------MLMGTLKN--- 565 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lf--gs~~~~i~idms~----~~~------~~~~~~~------~l~e~vr~--- 565 (850)
.+..-++++|.+|+|||.|..+|...-+ -+......++... ++. .-||+.+ ..++.+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 3457889999999999999999874322 1111111111110 000 1244322 33444442
Q ss_pred --CCCEEEeeccccc-----cCHHHHHHHHhhhccCccCceEEEEecCC
Q 003070 566 --YEKLVVLVEDIDL-----ADPQFIKILADGFETENFGKVIFVLTKGD 607 (850)
Q Consensus 566 --~P~sVvlldeiek-----A~~~v~~~l~q~~d~G~l~n~Iii~Tsn~ 607 (850)
+++.||++..++. .+..+...|.+.+..+...+.|+|+|--+
T Consensus 114 ~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~D 162 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQ 162 (262)
T ss_dssp TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTT
T ss_pred cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcc
Confidence 6778888866653 23456666666665555568888888654
No 303
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=87.93 E-value=0.27 Score=47.95 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEEecCCchHHHHHHHHHHHHh
Q 003070 511 WFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.+.++||.|+|||++++.||...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 57899999999999999999843
No 304
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=87.90 E-value=0.6 Score=51.50 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHh
Q 003070 490 FDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 490 ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
++.+..|.+.+...-.......++|.||.|+|||+++++||..+
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34444454444332222223468899999999999999999876
No 305
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=87.71 E-value=0.25 Score=48.72 Aligned_cols=32 Identities=13% Similarity=0.261 Sum_probs=25.6
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
--++|.|++|+|||++|+.||+.+ | +..+|+.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~-g----~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY-S----FVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS-S----CEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-C----ceEEeHH
Confidence 457899999999999999999875 3 3555554
No 306
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.50 E-value=1.2 Score=48.52 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=21.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHhH
Q 003070 88 RNTVIVGDCLSITDALVFDFMGRV 111 (850)
Q Consensus 88 ~NPVLVGe~gvgktAvVegla~rI 111 (850)
++.+|+|.+|+|||.++..||+++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999875
No 307
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=87.49 E-value=0.35 Score=54.23 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=27.0
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
-+++.||||+|||.||..||+.+= ..+|..|-.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~---~~iis~Ds~ 36 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFN---GEVINSDSM 36 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHT---EEEEECCTT
T ss_pred EEEEECcchhhHHHHHHHHHHHCC---CeEeecCcc
Confidence 467899999999999999999873 347777744
No 308
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=87.42 E-value=0.82 Score=44.14 Aligned_cols=34 Identities=6% Similarity=-0.052 Sum_probs=28.3
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEee
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFH 129 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLd 129 (850)
.+++.+|+|.+|+|||.+.+.|++++ |..++..|
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l----------~~~~i~~d 37 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT----------KRILYDSD 37 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH----------CCCEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh----------CCCEEECh
Confidence 46689999999999999999999886 45677766
No 309
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=87.40 E-value=0.26 Score=49.07 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.7
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
-.+.|+||+|+|||+|++.|+.++
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 367899999999999999999876
No 310
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.06 E-value=0.3 Score=49.50 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=25.5
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
++|+||+|+||++.|+.||+.+ .+.+|++.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~-----g~~~istG 32 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK-----GFVHISTG 32 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH-----CCeEEcHH
Confidence 6789999999999999999976 46777653
No 311
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=87.04 E-value=0.91 Score=51.48 Aligned_cols=71 Identities=13% Similarity=0.120 Sum_probs=47.4
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccC-hhHHHHHHHHHHHHHhccccCCCCe
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMK-KEEVEMNLTELKRKVDSLTSVGGGA 164 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~-RgefE~RlkeL~~~V~~~~~~~~gv 164 (850)
..+|.+|+|.||+|||-+++.||... +..++.++.+.+. ...+ ..+.+..+.++.......
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l----------~~~~~~v~~~~~~-~~g~vG~d~e~~lr~lf~~a~~~------- 110 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATKFT-EVGYVGKEVDSIIRDLTDSAMKL------- 110 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEGGGGC-----CCCCTHHHHHHHHHHHHHH-------
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHc----------CCCceeecchhhc-ccceeeccHHHHHHHHHHHHHhc-------
Confidence 35799999999999999999998775 4578888866432 1112 235777777776655431
Q ss_pred EEEecchhhhh
Q 003070 165 IIYTGDLKWTV 175 (850)
Q Consensus 165 ILfIdELh~lv 175 (850)
+++||+..+.
T Consensus 111 -~~~De~d~~~ 120 (444)
T 1g41_A 111 -VRQQEIAKNR 120 (444)
T ss_dssp -HHHHHHHSCC
T ss_pred -chhhhhhhhh
Confidence 2477765443
No 312
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=86.97 E-value=0.33 Score=48.48 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=25.8
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
.|++|+.|+|||++|..||.. | ...++++-..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~--~--~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD--A--PQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS--C--SSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc--C--CCeEEEecCC
Confidence 478999999999999999976 4 3567777654
No 313
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.91 E-value=1.6 Score=46.93 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=21.9
Q ss_pred CCeEEEcCCCchHHHHHHHHHHhH
Q 003070 88 RNTVIVGDCLSITDALVFDFMGRV 111 (850)
Q Consensus 88 ~NPVLVGe~gvgktAvVegla~rI 111 (850)
.+.+|+|+||+|||.+++-++..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 678999999999999999998876
No 314
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=86.89 E-value=1.1 Score=50.17 Aligned_cols=84 Identities=14% Similarity=0.066 Sum_probs=47.3
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccCCCCCchh---hHHHHhhhCCCEEEeeccccccCHHHHHH
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRNDGVSSHSE---MLMGTLKNYEKLVVLVEDIDLADPQFIKI 586 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~~~~~~~~---~l~e~vr~~P~sVvlldeiekA~~~v~~~ 586 (850)
.-+++.|+.|+|||++|++|++.+ ..+.||..... .|.. .+.++++ ....|| +|..-- ....+..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~----~~~~~~~~~~~~l~-~g~~vI-iD~~~~-~~~~r~~ 326 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDTLG----SWQRCVSSCQAALR-QGKRVV-IDNTNP-DVPSRAR 326 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGGSC----SHHHHHHHHHHHHH-TTCCEE-EESCCC-SHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccchHH----HHHHHHHHHHHHHh-cCCcEE-EeCCCC-CHHHHHH
Confidence 467789999999999999999876 35666655441 2322 3333343 334444 665532 2334444
Q ss_pred HHhhhccCccCceEEEEec
Q 003070 587 LADGFETENFGKVIFVLTK 605 (850)
Q Consensus 587 l~q~~d~G~l~n~Iii~Ts 605 (850)
+.+.+......-.+|.|.+
T Consensus 327 ~~~~~~~~~~~~~~v~l~~ 345 (416)
T 3zvl_A 327 YIQCAKDAGVPCRCFNFCA 345 (416)
T ss_dssp HHHHHHHHTCCEEEEEECC
T ss_pred HHHHHHHcCCeEEEEEEeC
Confidence 4454443223334555544
No 315
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=86.72 E-value=0.3 Score=49.45 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=21.7
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
-.+.|.||+|+|||+|++.|++.+
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhC
Confidence 577899999999999999999874
No 316
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=86.61 E-value=0.49 Score=55.38 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=37.4
Q ss_pred CCchHHHHHHHHHHHHhh--hCCCCeEEEEecCCchHHHHHHHHHHHHhcCCC-CceEEec
Q 003070 487 PWQFDSIHSIVEVLVECK--SAKKATWFLLQGNDTIGKRRLALSIAESVFGST-DLLFHID 544 (850)
Q Consensus 487 ~gQ~eai~~Ia~av~~~r--~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~-~~~i~id 544 (850)
.|+.. ..|++.++..+ .|....-++|.|++|+|||++|++||+.++... ..++.+|
T Consensus 374 ~w~~~--~eVsr~lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD 432 (573)
T 1m8p_A 374 EWFSY--PEVVKILRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL 432 (573)
T ss_dssp TTTSC--HHHHHHHHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred ccccc--ccccHHHHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence 57762 23444444444 344456788999999999999999999986311 3455565
No 317
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.60 E-value=1 Score=50.03 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=23.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
.+...+++.||+|+|||++++.||..+-
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3445788999999999999999998763
No 318
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=86.58 E-value=2.6 Score=49.97 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=25.7
Q ss_pred CCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHH
Q 003070 486 VPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLAL 527 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~ 527 (850)
-++|.++++.+.+ | ..+++.||||.|||..+.
T Consensus 27 ~~~Q~~~i~~i~~-------~---~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 27 FPPQAEAVEKVFS-------G---KNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp CCCCHHHHHHHTT-------C---SCEEEECSSHHHHHHHHH
T ss_pred CHHHHHHHHHHhC-------C---CcEEEEcCCccHHHHHHH
Confidence 4899999988532 2 467899999999999883
No 319
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=86.57 E-value=0.63 Score=54.13 Aligned_cols=50 Identities=22% Similarity=0.244 Sum_probs=33.9
Q ss_pred HHHHHHHHhh--hCCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEec
Q 003070 495 SIVEVLVECK--SAKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID 544 (850)
Q Consensus 495 ~Ia~av~~~r--~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id 544 (850)
.|+..++..+ .++....++|.|++|+|||++|+.|++.+......+..+|
T Consensus 356 eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 356 EVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp HHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred hHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 4444444444 2344467889999999999999999998753333444555
No 320
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=86.50 E-value=1.3 Score=47.74 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=27.0
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEec
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID 544 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id 544 (850)
...++|.||+|+|||+++..||..+--......-+|
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 468899999999999999999988753333333333
No 321
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=86.37 E-value=0.95 Score=49.18 Aligned_cols=26 Identities=15% Similarity=0.135 Sum_probs=22.2
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHh
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
+..-.++.||+|+|||.+|..||..+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999863
No 322
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=86.35 E-value=0.52 Score=45.65 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=17.8
Q ss_pred CeEEEEecCCchHHHHHHHH
Q 003070 509 ATWFLLQGNDTIGKRRLALS 528 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~ 528 (850)
.-.+.++||+|+|||+|++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 45788999999999999995
No 323
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=86.14 E-value=0.75 Score=46.66 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=51.0
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhc-CCCCc--eEEecCccc----cC------CCCCchh----------hHHHHhh-
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVF-GSTDL--LFHIDMRKR----ND------GVSSHSE----------MLMGTLK- 564 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lf-gs~~~--~i~idms~~----~~------~~~~~~~----------~l~e~vr- 564 (850)
.--++|+|++|+|||.|..+|...-+ .+... .+..+...+ .. .-||+.+ .+...+.
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 108 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILL 108 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHh
Confidence 45788999999999999999985443 22222 122222111 00 1244321 3333333
Q ss_pred --hCCCEEEeeccccccC---HHHHHHHHhhhccCccCceEEEEecC
Q 003070 565 --NYEKLVVLVEDIDLAD---PQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 565 --~~P~sVvlldeiekA~---~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
+.++.+||+-++..-. ......+++.+.......+|||+|--
T Consensus 109 ~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 109 TSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred cCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 3567777776654433 33344444444333334677777653
No 324
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=86.05 E-value=0.78 Score=47.18 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=26.3
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
-.-++|.||+|+|||++|+.||+.+ .+..|+.+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~-----g~~~is~~ 61 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH-----CYCHLSTG 61 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh-----CCeEEecH
Confidence 3578899999999999999999876 24555543
No 325
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=86.04 E-value=0.5 Score=49.38 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=33.6
Q ss_pred CchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHh
Q 003070 488 WQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 488 gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
+...++..|+-.|.....|+ .+.+.|+.|+|||++++.||+.+
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~---~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGR---SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTC---CEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhcCCC---EEEEECCCCCCHHHHHHHHHHhc
Confidence 44567888887777655443 57899999999999999999977
No 326
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=85.80 E-value=0.42 Score=54.99 Aligned_cols=41 Identities=10% Similarity=0.049 Sum_probs=36.2
Q ss_pred CcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHH
Q 003070 70 VSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVE 112 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~ 112 (850)
|+++-+++++-.|.. +.|.+|+|+||+|||.+++.++..+.
T Consensus 26 Gq~~~i~~l~~al~~--~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 26 ERSHAIRLCLLAALS--GESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp SCHHHHHHHHHHHHH--TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred HHHHHHHHHHHHHhc--CCeeEeecCchHHHHHHHHHHHHHHh
Confidence 788999998888876 57999999999999999999988774
No 327
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=85.79 E-value=0.42 Score=47.66 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=23.1
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHh
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
+.-.+.++||+|+|||+|++.|+.++
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34578899999999999999999987
No 328
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=85.74 E-value=0.48 Score=46.91 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.6
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHh
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
...+.+.||.|+|||+|++.|+.++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999987
No 329
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.72 E-value=0.47 Score=45.84 Aligned_cols=29 Identities=17% Similarity=0.192 Sum_probs=25.8
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCC
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTD 538 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~ 538 (850)
+..++.||+|+|||.|.++|+-+++++..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 58899999999999999999999987543
No 330
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=85.68 E-value=1 Score=52.36 Aligned_cols=67 Identities=13% Similarity=0.183 Sum_probs=40.7
Q ss_pred HHHHHhcc---CCCchHHHHHHHHHHHHhhh--CCCCeEEEEecCCchHHHHHHHHHHHHhcCCCC-ceEEecCc
Q 003070 478 LYKVLQEN---VPWQFDSIHSIVEVLVECKS--AKKATWFLLQGNDTIGKRRLALSIAESVFGSTD-LLFHIDMR 546 (850)
Q Consensus 478 L~~~L~~~---V~gQ~eai~~Ia~av~~~r~--gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~-~~i~idms 546 (850)
|.+.|+.- ..|+.- +.|++.++..+. .++...+.|.|+.|+|||+|+++||..+.-+.. .+..+|..
T Consensus 335 ir~~Lr~G~~~p~~f~~--peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 335 FQRRMRAGLKIPEWYSF--PEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp HHHHHTTTCCCCTTTSC--HHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred HHHHHhcCCCCCccccc--cchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 44445532 246651 234444444432 234467789999999999999999999864332 23335543
No 331
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=85.65 E-value=0.78 Score=49.00 Aligned_cols=26 Identities=12% Similarity=0.049 Sum_probs=22.3
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHh
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
+....++.||+|+|||.+|..+|..+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34677899999999999999999753
No 332
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.57 E-value=0.5 Score=48.38 Aligned_cols=26 Identities=12% Similarity=0.319 Sum_probs=23.3
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
...+.|.||+|+|||++++.|++.+-
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45778999999999999999999884
No 333
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=85.35 E-value=0.41 Score=47.80 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=21.1
Q ss_pred EEEEecCCchHHHHHHHHHHHHh
Q 003070 511 WFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.+.+.||.|+|||++|+.||+.+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999976
No 334
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=85.32 E-value=1.1 Score=48.20 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=21.9
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHh
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
..-.++.||+|+|||.+|..||..+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHH
Confidence 4567899999999999999999765
No 335
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=85.31 E-value=1.2 Score=47.54 Aligned_cols=41 Identities=12% Similarity=0.016 Sum_probs=29.8
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhc--CCCCceEEecCccc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVF--GSTDLLFHIDMRKR 548 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lf--gs~~~~i~idms~~ 548 (850)
+...+.++||.|+|||+|++.|+.++- .+...+.-++|..+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 345788999999999999999999874 23333444555543
No 336
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=85.29 E-value=1.3 Score=47.87 Aligned_cols=112 Identities=9% Similarity=0.072 Sum_probs=0.0
Q ss_pred CCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHH-----------------------HHHHHHh----------
Q 003070 487 PWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLA-----------------------LSIAESV---------- 533 (850)
Q Consensus 487 ~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA-----------------------~~LA~~l---------- 533 (850)
++|.+|++.+.+. ....+++.+|||.|||..+ ++||..+
T Consensus 50 ~~Q~~~i~~~~~~--------~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 121 (412)
T 3fht_A 50 KIQENALPLMLAE--------PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKF 121 (412)
T ss_dssp HHHHHHHHHHHSS--------SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcC--------CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhh
Q ss_pred cCCCCceEEecCccccCCCCCchh-------hHHHHhhh------CCCEEEeecccccc--CHHHHHHHHhhhccCccCc
Q 003070 534 FGSTDLLFHIDMRKRNDGVSSHSE-------MLMGTLKN------YEKLVVLVEDIDLA--DPQFIKILADGFETENFGK 598 (850)
Q Consensus 534 fgs~~~~i~idms~~~~~~~~~~~-------~l~e~vr~------~P~sVvlldeiekA--~~~v~~~l~q~~d~G~l~n 598 (850)
|......+...-...........+ +|...+++ +.+.+|++||++.. +......+..++..=.-.-
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~ 201 (412)
T 3fht_A 122 YPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC 201 (412)
T ss_dssp STTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTC
T ss_pred cccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCc
Q ss_pred eEEEEecC
Q 003070 599 VIFVLTKG 606 (850)
Q Consensus 599 ~Iii~Tsn 606 (850)
-+++||..
T Consensus 202 ~~i~~SAT 209 (412)
T 3fht_A 202 QMLLFSAT 209 (412)
T ss_dssp EEEEEESC
T ss_pred eEEEEEee
No 337
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=85.23 E-value=0.45 Score=46.89 Aligned_cols=21 Identities=33% Similarity=0.287 Sum_probs=19.5
Q ss_pred EEEEecCCchHHHHHHHHHHH
Q 003070 511 WFLLQGNDTIGKRRLALSIAE 531 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~ 531 (850)
.+.+.|+.|+|||++++.||+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 367899999999999999999
No 338
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=85.10 E-value=1.9 Score=53.59 Aligned_cols=49 Identities=10% Similarity=0.004 Sum_probs=37.6
Q ss_pred CCcHHHHHHHHHHHhcCCC--CCeEEEcCCCchHHHHHHHHHHhH--HhCCCC
Q 003070 69 SVSKEDIKLVFEVFLRKKR--RNTVIVGDCLSITDALVFDFMGRV--ERGDVP 117 (850)
Q Consensus 69 ~gRdeeirrVieIL~Rr~K--~NPVLVGe~gvgktAvVegla~rI--~~G~VP 117 (850)
-||++++.++.+.|..... +-..|+|.+|+|||.++..++.+. ..+..|
T Consensus 127 vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~ 179 (1249)
T 3sfz_A 127 VTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFS 179 (1249)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTST
T ss_pred ccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCC
Confidence 4999999999999964322 235689999999999999888764 344344
No 339
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=84.91 E-value=0.42 Score=48.36 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=22.4
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHh
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.-.+.++||+|+|||+|++.|+.++
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3467899999999999999999977
No 340
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=84.87 E-value=1.4 Score=43.33 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=28.5
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEee
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFH 129 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLd 129 (850)
+.++.+|+|.+|+|||.+.+.|++++ |..++..|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l----------~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL----------NVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH----------TCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc----------CCCEEcch
Confidence 46789999999999999999999887 45566665
No 341
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=84.82 E-value=1.1 Score=51.59 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=28.4
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEec
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID 544 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id 544 (850)
.+...+++.||+|+|||+|++.||-.+--+....+.+.
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 34567889999999999999999977654333444554
No 342
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=84.79 E-value=0.44 Score=48.81 Aligned_cols=30 Identities=13% Similarity=0.208 Sum_probs=24.9
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecC
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDM 545 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idm 545 (850)
-++++||+|+||++.|+.||+.+ .+.+|.+
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~-----g~~hIst 60 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF-----HFNHLSS 60 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH-----CCEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCceEcH
Confidence 46678999999999999999986 4666754
No 343
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=84.75 E-value=1.4 Score=51.42 Aligned_cols=48 Identities=25% Similarity=0.382 Sum_probs=33.5
Q ss_pred hHHHHhhhCCCEEEeecccccc-CHHHHHHHHhhhccCccCceEEEEecC
Q 003070 558 MLMGTLKNYEKLVVLVEDIDLA-DPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 558 ~l~e~vr~~P~sVvlldeiekA-~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.|+.|+-++|. |+||||---| |+.....+.+.+.+=.=..|+|+.|-+
T Consensus 489 ~lARal~~~p~-illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~ 537 (587)
T 3qf4_A 489 SIARALVKKPK-VLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQK 537 (587)
T ss_dssp HHHHHHHTCCS-EEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred HHHHHHHcCCC-EEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 48899999997 9999998865 787777777777642112455555443
No 344
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=84.74 E-value=0.71 Score=53.31 Aligned_cols=45 Identities=16% Similarity=0.361 Sum_probs=32.6
Q ss_pred CCchHHHHHHHHHHHHhh--hCCCCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 487 PWQFDSIHSIVEVLVECK--SAKKATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 487 ~gQ~eai~~Ia~av~~~r--~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
.++.. +|++.++..+ ..+...-+.|.|..|+|||++|++||+.|.
T Consensus 374 ~f~rp---eV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 374 WFSYP---EVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp TTSCH---HHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cccCh---hhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 45553 4444554444 234456788899999999999999999996
No 345
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=84.02 E-value=0.9 Score=45.10 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=23.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHh
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.+...+.++||+|+|||+|++.||-.+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345788999999999999999999754
No 346
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=84.00 E-value=1.2 Score=48.54 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=48.0
Q ss_pred CCCCeEEEEecCCchHHHHHHHHHHHHhcC--CCCceEEecCcccc-----C-----------CCCCchhhH----HHH-
Q 003070 506 AKKATWFLLQGNDTIGKRRLALSIAESVFG--STDLLFHIDMRKRN-----D-----------GVSSHSEML----MGT- 562 (850)
Q Consensus 506 gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfg--s~~~~i~idms~~~-----~-----------~~~~~~~~l----~e~- 562 (850)
|-+.+..++.||.|+|||.||..++..+-- .....+.||.-+.- + ..+...+++ .+.
T Consensus 25 Gl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 25 GMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp CBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred CCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 445557899999999999999988765532 13456777754320 0 122333433 233
Q ss_pred --hhhCCCEEEeecccccc
Q 003070 563 --LKNYEKLVVLVEDIDLA 579 (850)
Q Consensus 563 --vr~~P~sVvlldeiekA 579 (850)
+++..+.+|++|-|---
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 57788899999988643
No 347
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=83.99 E-value=0.75 Score=46.16 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=26.9
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEec
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID 544 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id 544 (850)
+....++.||+|+|||.+|..+|..+-......+.++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3457789999999999999999876543334444443
No 348
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.88 E-value=1.6 Score=57.12 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=45.9
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEec--Ccccc------C--------CCCCchhhHHHHh----hhCCCE
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID--MRKRN------D--------GVSSHSEMLMGTL----KNYEKL 569 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id--ms~~~------~--------~~~~~~~~l~e~v----r~~P~s 569 (850)
...++.||+|+|||.||..+|..+--.....+.|+ |+... . ..+.-.+.+.+.+ +++...
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~~~~ 812 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 812 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHHccCCC
Confidence 47889999999999999999987654333444444 44310 0 0111234444444 457788
Q ss_pred EEeeccccccC
Q 003070 570 VVLVEDIDLAD 580 (850)
Q Consensus 570 VvlldeiekA~ 580 (850)
+|++|.|.--.
T Consensus 813 lVVIDsLq~l~ 823 (1706)
T 3cmw_A 813 VIVVDSVAALT 823 (1706)
T ss_dssp EEEESCSTTCC
T ss_pred EEEEechhhhc
Confidence 99999998644
No 349
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=83.70 E-value=1.4 Score=46.83 Aligned_cols=57 Identities=14% Similarity=0.225 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhhCCCCeEEEEecC-CchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 491 DSIHSIVEVLVECKSAKKATWFLLQGN-DTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 491 eai~~Ia~av~~~r~gk~~~~~lf~Gp-~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
|+++.+-..|.....+++.-.++|.|+ .|+|||.+|..||..+-......+-||+.-
T Consensus 86 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 86 EAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp HHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred HHHHHHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 556666556655544555567888887 699999999999988865555566666553
No 350
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=83.56 E-value=1.1 Score=58.53 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=42.0
Q ss_pred EEEEecCCchHHHHHHHHHHHHh--cCCCCceEEecC--------------ccc-cCCCCC---chhhHHHHhhhCCCEE
Q 003070 511 WFLLQGNDTIGKRRLALSIAESV--FGSTDLLFHIDM--------------RKR-NDGVSS---HSEMLMGTLKNYEKLV 570 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~l--fgs~~~~i~idm--------------s~~-~~~~~~---~~~~l~e~vr~~P~sV 570 (850)
..|+.||.|+|||.||+++|-.- -|..-.||.+.= +++ .+.|.. .+..+....|+...++
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~ 1163 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 1163 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred EEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeE
Confidence 47899999999999999988422 233334555432 111 011111 1233444467889999
Q ss_pred Eeecccc
Q 003070 571 VLVEDID 577 (850)
Q Consensus 571 vlldeie 577 (850)
|++|+|+
T Consensus 1164 i~~d~~~ 1170 (1706)
T 3cmw_A 1164 IVVDSVA 1170 (1706)
T ss_dssp EEESCGG
T ss_pred EEeCchH
Confidence 9999986
No 351
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=83.54 E-value=0.59 Score=47.72 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=22.7
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHh
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.-.+.++||+|+|||+|.+.|+..+
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4578899999999999999999876
No 352
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=83.45 E-value=0.45 Score=48.16 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=16.0
Q ss_pred CeEEEEecCCchHHHHHHHHHH-HHh
Q 003070 509 ATWFLLQGNDTIGKRRLALSIA-ESV 533 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA-~~l 533 (850)
.-.+.++||+|+|||+|++.|+ ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3567899999999999999999 775
No 353
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=83.33 E-value=2.1 Score=43.14 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=22.8
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHH
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVE 112 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~ 112 (850)
+.+-.+|+|.+|+||+.++..|++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456678999999999999999987753
No 354
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=83.33 E-value=0.48 Score=46.81 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=19.5
Q ss_pred EEEEecCCchHHHHHHHHHHH
Q 003070 511 WFLLQGNDTIGKRRLALSIAE 531 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~ 531 (850)
.+.+.||.|+|||++++.||+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998
No 355
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=83.12 E-value=5.1 Score=44.91 Aligned_cols=41 Identities=10% Similarity=0.059 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhc-CCCCCeEEEcCCCchHHHHHHHHHHhHHh
Q 003070 73 EDIKLVFEVFLR-KKRRNTVIVGDCLSITDALVFDFMGRVER 113 (850)
Q Consensus 73 eeirrVieIL~R-r~K~NPVLVGe~gvgktAvVegla~rI~~ 113 (850)
+==-|+|+++.- .++-.-.|||.+|+|||.++..++.-|..
T Consensus 159 ~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp HHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred cccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 344578899875 35667889999999999999989888865
No 356
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=83.10 E-value=1.5 Score=46.04 Aligned_cols=57 Identities=11% Similarity=0.107 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhhCCCCeEEEEecC-CchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 491 DSIHSIVEVLVECKSAKKATWFLLQGN-DTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 491 eai~~Ia~av~~~r~gk~~~~~lf~Gp-~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
|+++.+-..|.....+++.-.++|.|+ .|+|||.+|..||..+=......+-||+.-
T Consensus 64 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~ 121 (271)
T 3bfv_A 64 EKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDM 121 (271)
T ss_dssp HHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred HHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 555666666665544555557778876 689999999999988865555666666654
No 357
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=82.98 E-value=0.66 Score=45.45 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=21.2
Q ss_pred EEEEecCCchHHHHHHHHHHHHh
Q 003070 511 WFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.+.+.|+.|+|||++|+.||+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999977
No 358
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=82.97 E-value=0.56 Score=46.89 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=19.6
Q ss_pred EEEecCCchHHHHHHHHHHHHh
Q 003070 512 FLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
+.+.||+|+||++|++.|.+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 5789999999999999998764
No 359
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=82.95 E-value=3.1 Score=43.06 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=22.9
Q ss_pred CCCCeEEEEecCCchHHHHHHHHHHHHh
Q 003070 506 AKKATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 506 gk~~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
+....-++++|++|+|||.|..+|...-
T Consensus 36 ~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 36 DVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456789999999999999999887433
No 360
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=82.91 E-value=0.63 Score=46.43 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=20.4
Q ss_pred eEEEEecCCchHHHHHHHHHHH
Q 003070 510 TWFLLQGNDTIGKRRLALSIAE 531 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~ 531 (850)
-.+.+.|++|+|||++|+.||+
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999
No 361
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=82.83 E-value=0.62 Score=47.39 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=22.9
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcC
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFG 535 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfg 535 (850)
..+.|.||+|+|||++++.|++.+-.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46779999999999999999998843
No 362
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=82.67 E-value=2.8 Score=45.48 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.7
Q ss_pred eEEEcCCCchHHHHHHHHHHhH
Q 003070 90 TVIVGDCLSITDALVFDFMGRV 111 (850)
Q Consensus 90 PVLVGe~gvgktAvVegla~rI 111 (850)
.+|+|.+|+|||+++..||+++
T Consensus 13 i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECCCccCHHHHHHHHHHhC
Confidence 4678999999999999999985
No 363
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=82.64 E-value=2.2 Score=42.33 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=25.5
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCC
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGS 536 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs 536 (850)
...-+.|+|+.|||||.|+..|+...|..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 34678899999999999999999998875
No 364
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=82.55 E-value=0.61 Score=48.94 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=24.5
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
-++|.|++|+|||++|+.||+.+. .+..||+.
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~~----~~~~i~~D 35 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKNP----GFYNINRD 35 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHST----TEEEECHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC----CcEEeccc
Confidence 478999999999999999998532 24455444
No 365
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=82.46 E-value=2.4 Score=47.56 Aligned_cols=76 Identities=13% Similarity=0.060 Sum_probs=48.7
Q ss_pred CCeEEEcCCCchHHHHHHHHHHhHHhC------------------CC-CcccCCcEEEEeeccccccccc-ChhHHHHHH
Q 003070 88 RNTVIVGDCLSITDALVFDFMGRVERG------------------DV-PQELKQTHVIKFHFAPVTLRFM-KKEEVEMNL 147 (850)
Q Consensus 88 ~NPVLVGe~gvgktAvVegla~rI~~G------------------~V-P~~Lkg~~visLdl~~l~~~~~-~RgefE~Rl 147 (850)
+-.+|+|.+|+|||+++..||+++..- .. |+++.|+.-.-+|.- .+... +-++|.+-.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~--~~~~~~s~~~F~~~a 80 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHV--DWSEEYYSHRFETEC 80 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCB--CTTSCCCHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCcc--ChHhHhhHHHHHHHH
Confidence 345789999999999999999986420 11 234555444444422 12222 378998888
Q ss_pred HHHHHHHhccccCCCCeEEEec
Q 003070 148 TELKRKVDSLTSVGGGAIIYTG 169 (850)
Q Consensus 148 keL~~~V~~~~~~~~gvILfId 169 (850)
..+++.+.+ .|.+.+.+|
T Consensus 81 ~~~i~~i~~----~g~~pilVG 98 (409)
T 3eph_A 81 MNAIEDIHR----RGKIPIVVG 98 (409)
T ss_dssp HHHHHHHHT----TTCEEEEEC
T ss_pred HHHHHHHHh----cCCCEEEEC
Confidence 888888875 455555544
No 366
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=82.42 E-value=1.3 Score=51.60 Aligned_cols=48 Identities=8% Similarity=0.224 Sum_probs=32.4
Q ss_pred hHHHHhhhCCCEEEeecccccc-CHHHHHHHHhhhccCccCceEEEEecC
Q 003070 558 MLMGTLKNYEKLVVLVEDIDLA-DPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 558 ~l~e~vr~~P~sVvlldeiekA-~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.|+.|+-++|. |++|||---| |+.....+.+.+.+=+=..|+|+.|-+
T Consensus 487 ~lAral~~~p~-illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~ 535 (578)
T 4a82_A 487 SIARIFLNNPP-ILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHR 535 (578)
T ss_dssp HHHHHHHHCCS-EEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSS
T ss_pred HHHHHHHcCCC-EEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 48889999997 9999998765 777777777766432112355554433
No 367
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=82.26 E-value=1.3 Score=45.51 Aligned_cols=98 Identities=17% Similarity=0.130 Sum_probs=53.4
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHH-hcCCCCce--EEecCcc----ccC------CCCCch-----------hhHHHHh
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAES-VFGSTDLL--FHIDMRK----RND------GVSSHS-----------EMLMGTL 563 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~-lfgs~~~~--i~idms~----~~~------~~~~~~-----------~~l~e~v 563 (850)
+..-++++|.+|+|||.|..+|... .|-+.... +..+... .+. .-||+. ..+..++
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~ 99 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHCY 99 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHHH
Confidence 4567899999999999999887632 22211111 1111110 000 124432 1233333
Q ss_pred ---hhCCCEEEeeccccc---cCHHHHHHHHhhhccCccCceEEEEec
Q 003070 564 ---KNYEKLVVLVEDIDL---ADPQFIKILADGFETENFGKVIFVLTK 605 (850)
Q Consensus 564 ---r~~P~sVvlldeiek---A~~~v~~~l~q~~d~G~l~n~Iii~Ts 605 (850)
.+.++.+|++-++.. .+..+...+.+.+..+-....|||+|.
T Consensus 100 ~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~n 147 (247)
T 3lxw_A 100 LLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTR 147 (247)
T ss_dssp HHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred HhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEc
Confidence 278898888866654 344556666776665555566666653
No 368
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=82.19 E-value=0.69 Score=45.13 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=21.1
Q ss_pred eEEEEecCCchHHHHHHHHHHHH
Q 003070 510 TWFLLQGNDTIGKRRLALSIAES 532 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~ 532 (850)
..+.+.|+.|+|||++|+.||+.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 46789999999999999999996
No 369
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=82.17 E-value=0.61 Score=48.10 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=19.6
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHh
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
...+.|.||+|+|||++++.|++.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999987
No 370
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=82.09 E-value=3.6 Score=44.00 Aligned_cols=90 Identities=12% Similarity=0.186 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHHHHHHHHHH
Q 003070 75 IKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMNLTELKRKV 154 (850)
Q Consensus 75 irrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~RlkeL~~~V 154 (850)
+.++...+..++...-++.|++|+|||.++..+++... ..+. ....++.++-+. ...+-++ ++++++.+
T Consensus 6 ~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~--~~~~--~~~d~~~l~~~~---~~~~id~----ir~li~~~ 74 (305)
T 2gno_A 6 LETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVE--KFPP--KASDVLEIDPEG---ENIGIDD----IRTIKDFL 74 (305)
T ss_dssp HHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHH--TSCC--CTTTEEEECCSS---SCBCHHH----HHHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCc--hhhc--cCCCEEEEcCCc---CCCCHHH----HHHHHHHH
Confidence 34444444443434567789999999999999987521 1111 122344443220 0111223 34455555
Q ss_pred hccccCCCCeEEEecchhhhh
Q 003070 155 DSLTSVGGGAIIYTGDLKWTV 175 (850)
Q Consensus 155 ~~~~~~~~gvILfIdELh~lv 175 (850)
......++.-|++|||.|.+-
T Consensus 75 ~~~p~~~~~kvviIdead~lt 95 (305)
T 2gno_A 75 NYSPELYTRKYVIVHDCERMT 95 (305)
T ss_dssp TSCCSSSSSEEEEETTGGGBC
T ss_pred hhccccCCceEEEeccHHHhC
Confidence 432112446899999999984
No 371
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=82.05 E-value=1.7 Score=47.20 Aligned_cols=75 Identities=12% Similarity=0.065 Sum_probs=44.1
Q ss_pred CCeEEEcCCCchHHHHHHHHHHhHHh------------C------C-CCcccCCcEEEEeeccccccccc-ChhHHHHHH
Q 003070 88 RNTVIVGDCLSITDALVFDFMGRVER------------G------D-VPQELKQTHVIKFHFAPVTLRFM-KKEEVEMNL 147 (850)
Q Consensus 88 ~NPVLVGe~gvgktAvVegla~rI~~------------G------~-VP~~Lkg~~visLdl~~l~~~~~-~RgefE~Rl 147 (850)
+-.+|+|.+|+|||+++..||+++.. | . =|+++.++.=.=+|+-. +... +-++|.+..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~--~~e~~s~~~F~~~a 81 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKD--PSESFSVADFQDLA 81 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBC--TTSCCCHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCC--hhhhccHHHHHHHH
Confidence 34577899999999999999998631 0 0 01233333322222211 1112 357888888
Q ss_pred HHHHHHHhccccCCCCeEEEe
Q 003070 148 TELKRKVDSLTSVGGGAIIYT 168 (850)
Q Consensus 148 keL~~~V~~~~~~~~gvILfI 168 (850)
+++++.+.+ .+.+.|.+
T Consensus 82 ~~~i~~i~~----~gk~pIlV 98 (322)
T 3exa_A 82 TPLITEIHE----RGRLPFLV 98 (322)
T ss_dssp HHHHHHHHH----TTCEEEEE
T ss_pred HHHHHHHHh----CCCcEEEE
Confidence 888887775 44555543
No 372
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=81.87 E-value=2.2 Score=47.11 Aligned_cols=57 Identities=11% Similarity=0.143 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHHHhc--CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccc
Q 003070 70 VSKEDIKLVFEVFLR--KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPV 133 (850)
Q Consensus 70 gRdeeirrVieIL~R--r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l 133 (850)
|....++++++.+.+ .+..+.+|.|++|+||+-+++.+...-.+ ++..++.++.+++
T Consensus 141 g~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r-------~~~~fv~v~~~~~ 199 (387)
T 1ny5_A 141 FESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDR-------SKEPFVALNVASI 199 (387)
T ss_dssp CCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTT-------TTSCEEEEETTTS
T ss_pred hccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCC-------CCCCeEEEecCCC
Confidence 444555555555543 35667778899999999887666544222 3456888886643
No 373
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=81.78 E-value=1.4 Score=45.13 Aligned_cols=93 Identities=10% Similarity=0.117 Sum_probs=55.3
Q ss_pred CeEE-EEecCCchHHHHHHHHHHHHhcCCCCceEEecCc---cccCC----C---------CCchhhHHHHhhhCCCEEE
Q 003070 509 ATWF-LLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR---KRNDG----V---------SSHSEMLMGTLKNYEKLVV 571 (850)
Q Consensus 509 ~~~~-lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms---~~~~~----~---------~~~~~~l~e~vr~~P~sVv 571 (850)
.+|+ ++.||-|.|||+.+..+|.-.-+.....+-+... .|.+. . -.-...+.+.+. .+|.||
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~-~~~dvV 105 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHIT-EEMDVI 105 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGGGCC-SSCCEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHh-cCCCEE
Confidence 3565 4799999999999999987665544444434211 12110 0 000112333333 479999
Q ss_pred eeccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 572 LVEDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 572 lldeiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
++||+-.-+++....|..+.+. +..||+|--
T Consensus 106 iIDEaQF~~~~~V~~l~~l~~~----~~~Vi~~Gl 136 (214)
T 2j9r_A 106 AIDEVQFFDGDIVEVVQVLANR----GYRVIVAGL 136 (214)
T ss_dssp EECCGGGSCTTHHHHHHHHHHT----TCEEEEEEC
T ss_pred EEECcccCCHHHHHHHHHHhhC----CCEEEEEec
Confidence 9999999877666766665555 345666654
No 374
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=81.68 E-value=2.3 Score=43.00 Aligned_cols=83 Identities=8% Similarity=0.058 Sum_probs=50.2
Q ss_pred CeEEE-EecCCchHHH-HHHHHHHHHhcCCCCceEEecCc---cccCCCC------------CchhhHHHHhhhCCCEEE
Q 003070 509 ATWFL-LQGNDTIGKR-RLALSIAESVFGSTDLLFHIDMR---KRNDGVS------------SHSEMLMGTLKNYEKLVV 571 (850)
Q Consensus 509 ~~~~l-f~Gp~gvGKt-~lA~~LA~~lfgs~~~~i~idms---~~~~~~~------------~~~~~l~e~vr~~P~sVv 571 (850)
.+|++ +.||-|.||| +|.+++.........- +.+.-. .|.+.-. .-...+.+.. +++.||
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kv-l~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~--~~~DvI 95 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKC-LVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEA--LGVAVI 95 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCE-EEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHH--HTCSEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeE-EEEccccCccchhhhhhccCCcccceecCCHHHHHHhc--cCCCEE
Confidence 35654 4899999999 9999999888865433 333211 1211100 0112233333 357899
Q ss_pred eeccccccCHHHHHHHHhhhccCc
Q 003070 572 LVEDIDLADPQFIKILADGFETEN 595 (850)
Q Consensus 572 lldeiekA~~~v~~~l~q~~d~G~ 595 (850)
++||+-.- ++....+....+.|+
T Consensus 96 lIDEaQFf-k~~ve~~~~L~~~gk 118 (195)
T 1w4r_A 96 GIDEGQFF-PDIVEFCEAMANAGK 118 (195)
T ss_dssp EESSGGGC-TTHHHHHHHHHHTTC
T ss_pred EEEchhhh-HHHHHHHHHHHHCCC
Confidence 99999988 665555555556554
No 375
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=81.58 E-value=0.68 Score=45.80 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=26.7
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
.-.+.+.||+|+|||++|+.|++.+- .+..+++..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~ 55 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDD 55 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCc
Confidence 45778999999999999999998652 344555544
No 376
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=81.49 E-value=0.67 Score=47.25 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=21.7
Q ss_pred EEEEecCCchHHHHHHHHHHHHhc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
.+.|.|++|+|||++++.||+.+=
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467999999999999999999873
No 377
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=81.43 E-value=2.2 Score=51.55 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.6
Q ss_pred EEEEecCCchHHHHHHHHHHHHhc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
.+.++||.|.|||++.|.||-++.
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhhhh
Confidence 678999999999999999998764
No 378
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=81.40 E-value=0.76 Score=46.02 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=21.2
Q ss_pred EEEecCCchHHHHHHHHHHHHhcC
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFG 535 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfg 535 (850)
..|-|+||+|||+.++.|++.|=.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~ 26 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 458899999999999999998843
No 379
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=81.36 E-value=2.8 Score=51.67 Aligned_cols=98 Identities=13% Similarity=0.123 Sum_probs=50.2
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhc----CC---CC-c--------eEEecCccccC-CCCCchh---hHHHHhh-hCCC
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVF----GS---TD-L--------LFHIDMRKRND-GVSSHSE---MLMGTLK-NYEK 568 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lf----gs---~~-~--------~i~idms~~~~-~~~~~~~---~l~e~vr-~~P~ 568 (850)
-.+.++||.|.|||++.+.+|-.++ |. .. . |-++.+...-. ...++.+ ++...++ -.+.
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~p 753 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQ 753 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCTT
T ss_pred eEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccCC
Confidence 4678999999999999999986542 21 11 1 11112111101 1122222 3334443 2556
Q ss_pred EEEeecccccc-CHHHHHHHH-hhhccC-ccCceEEEEecCC
Q 003070 569 LVVLVEDIDLA-DPQFIKILA-DGFETE-NFGKVIFVLTKGD 607 (850)
Q Consensus 569 sVvlldeiekA-~~~v~~~l~-q~~d~G-~l~n~Iii~Tsn~ 607 (850)
++|||||.-.+ |+.-...|. .+++.= +=.++.+|++|-.
T Consensus 754 ~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~ 795 (918)
T 3thx_B 754 SLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHY 795 (918)
T ss_dssp CEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 79999999865 554444443 233210 0024566776653
No 380
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=81.30 E-value=1.5 Score=44.63 Aligned_cols=40 Identities=10% Similarity=0.107 Sum_probs=31.9
Q ss_pred CCCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 506 AKKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 506 gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
|+.....++.|..|+|||+++..||..+. ......-+|+.
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D 50 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLD 50 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECC
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 45567888999999999999999999888 55555555544
No 381
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=81.27 E-value=0.32 Score=50.40 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=23.6
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
+..-+.|.|++|+|||++|+.||+.+-
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 345778999999999999999999874
No 382
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=81.25 E-value=0.98 Score=46.24 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.6
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHh
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
...+-+.||.|+|||++++.|+..+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999977
No 383
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=81.21 E-value=0.76 Score=46.39 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=21.4
Q ss_pred EEEEecCCchHHHHHHHHHHHHhc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
-..|-|+||+|||++++.|++.+-
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 356889999999999999999983
No 384
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=80.97 E-value=1.3 Score=48.69 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccc
Q 003070 74 DIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPV 133 (850)
Q Consensus 74 eirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l 133 (850)
++.+.+.-++ ++..+.++.||+|+||+.+++.+...-.+ ++. ++.++.+++
T Consensus 140 ~~~~~~~~~a-~~~~~vli~GesGtGKe~lAr~ih~~s~r-------~~~-fv~vnc~~~ 190 (368)
T 3dzd_A 140 EIKRLIPKIA-KSKAPVLITGESGTGKEIVARLIHRYSGR-------KGA-FVDLNCASI 190 (368)
T ss_dssp HHHHHHHHHH-TSCSCEEEECCTTSSHHHHHHHHHHHHCC-------CSC-EEEEESSSS
T ss_pred HHHhhhhhhh-ccchhheEEeCCCchHHHHHHHHHHhccc-------cCC-cEEEEcccC
Confidence 3344444444 45667888999999999888666543221 122 888886643
No 385
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=80.88 E-value=2.1 Score=52.84 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=20.3
Q ss_pred eEEEEecCCchHHHHHHHHHHHHh
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
-.+.++||.|.|||++.|.+|-.+
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~~ 686 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVIV 686 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999996543
No 386
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=80.82 E-value=2.6 Score=44.62 Aligned_cols=59 Identities=17% Similarity=0.243 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHhhhCCCCeEEEEecC-CchHHHHHHHHHHHHhcCCCCceEEecCccc
Q 003070 490 FDSIHSIVEVLVECKSAKKATWFLLQGN-DTIGKRRLALSIAESVFGSTDLLFHIDMRKR 548 (850)
Q Consensus 490 ~eai~~Ia~av~~~r~gk~~~~~lf~Gp-~gvGKt~lA~~LA~~lfgs~~~~i~idms~~ 548 (850)
.|+++.+-..|.....+++.-.++|.|+ .|+|||.+|..||..+=......+-||+.-+
T Consensus 73 ~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~ 132 (286)
T 3la6_A 73 IEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR 132 (286)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred HHHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence 4666777777766555554445666665 6999999999999888766566666776543
No 387
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=80.76 E-value=1.5 Score=47.08 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=25.7
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCc
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDL 539 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~ 539 (850)
...+.|+||+|+|||++++.||.++--+...
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~ 132 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKK 132 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCE
Confidence 4588899999999999999999887654433
No 388
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=80.74 E-value=1.3 Score=43.24 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=27.5
Q ss_pred EEEe-cCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 512 FLLQ-GNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 512 ~lf~-Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
+.|. +-.|+|||++|..||..+-......+-+|+..
T Consensus 4 i~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~ 40 (206)
T 4dzz_A 4 ISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDP 40 (206)
T ss_dssp EEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 3344 66789999999999988865556777788764
No 389
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=80.68 E-value=1 Score=47.87 Aligned_cols=44 Identities=7% Similarity=-0.029 Sum_probs=31.3
Q ss_pred CcHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhHHh
Q 003070 70 VSKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRVER 113 (850)
Q Consensus 70 gRdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI~~ 113 (850)
|.++-++.+...+......+.+|.|+||+|||.+++.++..+.+
T Consensus 28 G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 28 GQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp SCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred ChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCcc
Confidence 56664443333333345668999999999999999999997753
No 390
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=80.55 E-value=6 Score=46.22 Aligned_cols=42 Identities=12% Similarity=0.212 Sum_probs=34.0
Q ss_pred hCCCEEEeeccccc----cCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 565 NYEKLVVLVEDIDL----ADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 565 ~~P~sVvlldeiek----A~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.-||-||++||... +...+...|.++...||=-..-+|+++.
T Consensus 341 ~lP~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQ 386 (574)
T 2iut_A 341 TLPTIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQ 386 (574)
T ss_dssp CCCEEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEES
T ss_pred CCCcEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEec
Confidence 34788999999973 4578889999999999976777777776
No 391
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=80.54 E-value=0.82 Score=47.37 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=25.9
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
.+.+.||.|+|||++|+.||+.+ .+..+|...
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l-----g~~~~d~g~ 42 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL-----GARYLDTGA 42 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCCcccCCc
Confidence 57789999999999999999987 245566544
No 392
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=80.48 E-value=4.9 Score=41.74 Aligned_cols=90 Identities=6% Similarity=0.005 Sum_probs=51.2
Q ss_pred eEE-EEecCCchHHHHHHHHHHHHhcCCCCceEEec--Ccc-ccCC---CCCc---------hhhHHHHhhhCCCEEEee
Q 003070 510 TWF-LLQGNDTIGKRRLALSIAESVFGSTDLLFHID--MRK-RNDG---VSSH---------SEMLMGTLKNYEKLVVLV 573 (850)
Q Consensus 510 ~~~-lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id--ms~-~~~~---~~~~---------~~~l~e~vr~~P~sVvll 573 (850)
||+ ++.||-|.|||+.+..+|.-.-+.....+-+- ... |... .-|. ...+.+.+ .+|.||++
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~~di~~~~--~~~dvViI 96 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEA--LGVAVIGI 96 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-----------CEEEEESSGGGGHHHH--TTCSEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhcCCeeEEEecCCHHHHHHHh--ccCCEEEE
Confidence 454 55899999999887777755545444333332 221 1110 0000 01233444 67999999
Q ss_pred ccccccCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 574 EDIDLADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 574 deiekA~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
||+-.+.. +..+ .+.+++ .+.-||+|--
T Consensus 97 DEaQF~~~-v~el-~~~l~~---~gi~VI~~GL 124 (234)
T 2orv_A 97 DEGQFFPD-IVEF-CEAMAN---AGKTVIVAAL 124 (234)
T ss_dssp SSGGGCTT-HHHH-HHHHHH---TTCEEEEECC
T ss_pred Echhhhhh-HHHH-HHHHHh---CCCEEEEEec
Confidence 99999974 4444 455555 4556777655
No 393
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=80.30 E-value=3.5 Score=47.50 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=29.0
Q ss_pred hCCCEEEeeccccc----cCHHHHHHHHhhhccCccCceEEEEecC
Q 003070 565 NYEKLVVLVEDIDL----ADPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 565 ~~P~sVvlldeiek----A~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
..||-||++||..- +...+...|.++...|+=-..-+|+++.
T Consensus 295 ~lP~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQ 340 (512)
T 2ius_A 295 KEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQ 340 (512)
T ss_dssp CCCEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEES
T ss_pred cCCcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEec
Confidence 36888999999842 2346677788888888844444455555
No 394
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=80.21 E-value=0.98 Score=46.67 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.0
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHh
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
...+.+.||.|+|||++++.||+.+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3467799999999999999999776
No 395
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=80.04 E-value=2.5 Score=41.68 Aligned_cols=28 Identities=18% Similarity=0.045 Sum_probs=24.2
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCC
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGS 536 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs 536 (850)
..-+.|.|+.|+|||.|+..|+..++..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 4578899999999999999999887654
No 396
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=80.01 E-value=3.5 Score=54.75 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=47.2
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccccC----------------CCCCchhhHHHHhhh----CCCE
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKRND----------------GVSSHSEMLMGTLKN----YEKL 569 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~~~----------------~~~~~~~~l~e~vr~----~P~s 569 (850)
.-.++.|++|+|||.||..+|..+--....++.|++-+--. .+...++.+.+.+++ ....
T Consensus 733 ~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~~~~~ 812 (2050)
T 3cmu_A 733 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 812 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhccCCC
Confidence 45689999999999999999987754444677776543100 011123444455444 6778
Q ss_pred EEeeccccccC
Q 003070 570 VVLVEDIDLAD 580 (850)
Q Consensus 570 VvlldeiekA~ 580 (850)
+|++|.|.--.
T Consensus 813 LVIIDsLq~i~ 823 (2050)
T 3cmu_A 813 VIVVDSVAALT 823 (2050)
T ss_dssp EEEESCGGGCC
T ss_pred EEEEcchhhhc
Confidence 99999987543
No 397
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=79.89 E-value=0.8 Score=44.87 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=28.1
Q ss_pred CCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 487 PWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 487 ~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
++|.+|++.+.+ | ..+++.+|||.|||.++..++..++
T Consensus 36 ~~Q~~~i~~~~~-------~---~~~li~~~tGsGKT~~~~~~~~~~~ 73 (216)
T 3b6e_A 36 PYQMEVAQPALE-------G---KNIIICLPTGSGKTRVAVYIAKDHL 73 (216)
T ss_dssp HHHHHHHHHHHT-------T---CCEEEECSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-------C---CCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 467777776542 2 2478999999999999988876553
No 398
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=79.82 E-value=1 Score=44.17 Aligned_cols=36 Identities=11% Similarity=0.090 Sum_probs=26.3
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCC--CCceEEecCc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGS--TDLLFHIDMR 546 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs--~~~~i~idms 546 (850)
.+.+.||+|+|||+|++.|+.++-.. ...-|.+|-.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 46789999999999999999998533 2345666643
No 399
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=79.70 E-value=1.2 Score=42.79 Aligned_cols=33 Identities=12% Similarity=0.351 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHH
Q 003070 75 IKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFM 108 (850)
Q Consensus 75 irrVieIL~Rr~K~NPVLVGe~gvgktAvVegla 108 (850)
++++.+ |-++++-+.+|||.+|||||.++..|.
T Consensus 5 ~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 5 FTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp HHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHh
Confidence 456677 556677789999999999999987775
No 400
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=79.55 E-value=2.9 Score=53.54 Aligned_cols=48 Identities=17% Similarity=0.342 Sum_probs=31.8
Q ss_pred hHHHHhhhCCCEEEeecccccc-CHHHHHHHHhhhccCccCceEEEEecC
Q 003070 558 MLMGTLKNYEKLVVLVEDIDLA-DPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 558 ~l~e~vr~~P~sVvlldeiekA-~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.|+.|+-++|. |++|||.--| |++--..+.++|++-.=..|+|+.|=+
T Consensus 1227 aiARAllr~~~-ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHR 1275 (1321)
T 4f4c_A 1227 AIARALVRNPK-ILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHR 1275 (1321)
T ss_dssp HHHHHHHSCCS-EEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSS
T ss_pred HHHHHHHhCCC-EEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 48999999997 9999998654 666666666666542212355554433
No 401
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=79.51 E-value=2.2 Score=50.18 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=21.6
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcC
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFG 535 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfg 535 (850)
-+++.||+|+|||.++..++..+..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~ 221 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLAR 221 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999888877764
No 402
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=79.34 E-value=2.6 Score=41.36 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=25.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCC
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGS 536 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs 536 (850)
.....++|+|++|+|||.|..+|+...|..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~ 39 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP 39 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 345789999999999999999999877753
No 403
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=79.12 E-value=0.96 Score=46.87 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=22.7
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
..+.|.|++|+|||++++.|++.+-
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999999884
No 404
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=79.08 E-value=1.2 Score=47.97 Aligned_cols=28 Identities=14% Similarity=0.095 Sum_probs=24.3
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
++...+.+.||+|+|||+|++.|+.++-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4456788999999999999999999874
No 405
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=78.99 E-value=0.98 Score=45.96 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=22.3
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
.-+.|.|++|+|||++++.|++.+-
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3577999999999999999999884
No 406
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=78.97 E-value=1.2 Score=42.36 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=25.5
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCC
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGS 536 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs 536 (850)
.+..++.||+|+|||.+..||.-.+||.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l~g~ 50 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGLYWP 50 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHCS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3678999999999999999999999885
No 407
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=78.96 E-value=3.5 Score=40.35 Aligned_cols=26 Identities=12% Similarity=-0.059 Sum_probs=23.0
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhH
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRV 111 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI 111 (850)
.....+|+|.+|+|||.+++.|++++
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999999886
No 408
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=78.95 E-value=2.5 Score=49.39 Aligned_cols=47 Identities=6% Similarity=0.087 Sum_probs=31.4
Q ss_pred hHHHHhhhCCCEEEeecccccc-CHHHHHHHHhhhccCccCceEEEEecC
Q 003070 558 MLMGTLKNYEKLVVLVEDIDLA-DPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 558 ~l~e~vr~~P~sVvlldeiekA-~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.|+.|+-++|. |+||||---| |+.....+.+.+.+= .++..+|+.+.
T Consensus 501 ~iAral~~~p~-illlDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH 548 (598)
T 3qf4_B 501 AITRAFLANPK-ILILDEATSNVDTKTEKSIQAAMWKL-MEGKTSIIIAH 548 (598)
T ss_dssp HHHHHHHTCCS-EEEECCCCTTCCHHHHHHHHHHHHHH-HTTSEEEEESC
T ss_pred HHHHHHhcCCC-EEEEECCccCCCHHHHHHHHHHHHHH-cCCCEEEEEec
Confidence 48899999997 9999998755 777666666666542 13334444444
No 409
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=78.63 E-value=1 Score=46.02 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.6
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
..+.|.|++|+|||++++.|++.+-
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4678999999999999999999883
No 410
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=78.61 E-value=7.5 Score=46.94 Aligned_cols=45 Identities=16% Similarity=0.045 Sum_probs=28.6
Q ss_pred HHHHHHhccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHH
Q 003070 477 DLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIA 530 (850)
Q Consensus 477 ~L~~~L~~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA 530 (850)
.|.++-..-+.-|.++|..+... ...+++.||||+|||.+...+.
T Consensus 86 ~l~~r~~lP~~~q~~~i~~~l~~---------~~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 86 ILKIRRELPVHAQRDEFLKLYQN---------NQIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp HHHHHTTSGGGGGHHHHHHHHHH---------CSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHhhcCChHHHHHHHHHHHhC---------CCeEEEECCCCCCHHHHHHHHH
Confidence 33333333445777776655321 2368899999999999666553
No 411
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=78.60 E-value=9.8 Score=37.81 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=22.7
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHH
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVE 112 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~ 112 (850)
.+...+|+|+||+|||.++..++..+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 567889999999999999888876654
No 412
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=78.25 E-value=9.3 Score=37.43 Aligned_cols=27 Identities=7% Similarity=0.059 Sum_probs=23.1
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHH
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVE 112 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~ 112 (850)
.+...+|+|++|+|||.++..++..+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 466789999999999999999987654
No 413
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=78.16 E-value=4 Score=44.22 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=30.2
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhc--CCCCceEEecCc
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVF--GSTDLLFHIDMR 546 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lf--gs~~~~i~idms 546 (850)
.+...+.++||+|+|||+|.+.|+.++. +..-.++..|..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPS 94 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCc
Confidence 4567888999999999999999998875 334344555553
No 414
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=78.15 E-value=3.3 Score=41.81 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=20.9
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHh
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGR 110 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~r 110 (850)
..-+.+|||.+|||||.++..|+..
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4557899999999999999877753
No 415
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=78.02 E-value=1.1 Score=46.17 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=28.2
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCC------CCceEEecCccc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGS------TDLLFHIDMRKR 548 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs------~~~~i~idms~~ 548 (850)
-.+.+.|+.|+|||++|+.||+.+ |- ....+.+|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l-g~~~~d~~~~~~~~i~~D~~ 66 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL-GQNEVDYRQKQVVILSQDSF 66 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-TGGGSCGGGCSEEEEEGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh-hhhcccccCCceEEEecCcc
Confidence 467899999999999999999965 31 123446676665
No 416
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=77.95 E-value=1.4 Score=45.19 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.6
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
....+.|.|++|+|||++++.|++.+-
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345778899999999999999999884
No 417
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=77.09 E-value=8.6 Score=44.91 Aligned_cols=41 Identities=12% Similarity=0.070 Sum_probs=33.3
Q ss_pred CCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecc
Q 003070 88 RNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFA 131 (850)
Q Consensus 88 ~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~ 131 (850)
.+-++.|-+|+||+-.+..++..+...--|+ .++||-+|..
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~---ev~lilIDpK 255 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPS---EARLIMIDPK 255 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTT---TEEEEEECSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCc---ceEEEEeCCC
Confidence 6789999999999999999998888765565 3678888843
No 418
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=77.05 E-value=5.6 Score=39.01 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=23.5
Q ss_pred CCCCCeEEEcCCCchHHHHHHHHHHhH
Q 003070 85 KKRRNTVIVGDCLSITDALVFDFMGRV 111 (850)
Q Consensus 85 r~K~NPVLVGe~gvgktAvVegla~rI 111 (850)
+.....+|+|.+|+|||.+++.|+..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456789999999999999999999886
No 419
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=77.00 E-value=0.72 Score=46.70 Aligned_cols=23 Identities=30% Similarity=0.234 Sum_probs=20.6
Q ss_pred eEEEEecCCchHHHHHHHHHHHH
Q 003070 510 TWFLLQGNDTIGKRRLALSIAES 532 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~ 532 (850)
-.+.++||.|+|||+|.+.|+-+
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46678999999999999999976
No 420
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=76.97 E-value=1.4 Score=47.53 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=24.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHh
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.+.-.+.++||+|+|||+|++.|+.++
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345678899999999999999999998
No 421
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=76.88 E-value=2.8 Score=53.71 Aligned_cols=37 Identities=16% Similarity=0.048 Sum_probs=27.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEec
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID 544 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id 544 (850)
++.....+.||+|+|||+|++.|..++-- ..--|.+|
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~~-~~G~I~id 478 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYDV-LKGKITID 478 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSCC-SEEEEEET
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccccc-ccCcccCC
Confidence 45567889999999999999999877632 22335554
No 422
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=76.65 E-value=1.8 Score=41.47 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=23.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
.+...++++|++|+|||.|..+|...-|
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3457899999999999999999986554
No 423
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=76.65 E-value=1.9 Score=45.24 Aligned_cols=28 Identities=11% Similarity=0.089 Sum_probs=24.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
.+...+++.||+|+|||+|++.||-.+-
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3445788999999999999999998875
No 424
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=76.55 E-value=1.2 Score=44.43 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.2
Q ss_pred eEEEEecCCchHHHHHHHHHHH
Q 003070 510 TWFLLQGNDTIGKRRLALSIAE 531 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~ 531 (850)
.-+||.|++|+||+++|.+|.+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4578999999999999999997
No 425
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=76.47 E-value=0.87 Score=46.21 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=23.1
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHH
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAES 532 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~ 532 (850)
++...+.|.||+|+|||++++.|+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34568889999999999999999987
No 426
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=76.39 E-value=2.5 Score=43.28 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=21.8
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhH
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRV 111 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI 111 (850)
+||+-++.|.||+|||-++-.+|+-+
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHh
Confidence 55678889999999998888887765
No 427
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=76.21 E-value=2.6 Score=51.17 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=21.8
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcC
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFG 535 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfg 535 (850)
-+++.||.|+|||.++..++..+..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999988877764
No 428
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=76.12 E-value=3.1 Score=42.78 Aligned_cols=85 Identities=14% Similarity=0.273 Sum_probs=47.9
Q ss_pred eEE-EEecCCchHHHHHH-HHHHHHhcCCCCce-EE--ecCccccC---CCCC------ch---hhHHHHhhhCCCEEEe
Q 003070 510 TWF-LLQGNDTIGKRRLA-LSIAESVFGSTDLL-FH--IDMRKRND---GVSS------HS---EMLMGTLKNYEKLVVL 572 (850)
Q Consensus 510 ~~~-lf~Gp~gvGKt~lA-~~LA~~lfgs~~~~-i~--idms~~~~---~~~~------~~---~~l~e~vr~~P~sVvl 572 (850)
||+ ++.||-|.|||+.+ +.+-++.......+ +. +|-..-.. +.-| .+ .-|.+.+. +++.||+
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i~-~~~dvV~ 106 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHDL-TNVDVIG 106 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSCC-TTCSEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHHh-cCCCEEE
Confidence 454 57899999999944 45445554433332 32 24221111 0001 01 12333333 4677999
Q ss_pred eccccccCHHHHHHHHhhhccCc
Q 003070 573 VEDIDLADPQFIKILADGFETEN 595 (850)
Q Consensus 573 ldeiekA~~~v~~~l~q~~d~G~ 595 (850)
+||+-.-++++...|.++.+.|.
T Consensus 107 IDEaQFf~~~~v~~l~~la~~gi 129 (219)
T 3e2i_A 107 IDEVQFFDDEIVSIVEKLSADGH 129 (219)
T ss_dssp ECCGGGSCTHHHHHHHHHHHTTC
T ss_pred EechhcCCHHHHHHHHHHHHCCC
Confidence 99999999888888888776553
No 429
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=75.99 E-value=2.4 Score=44.16 Aligned_cols=26 Identities=31% Similarity=0.244 Sum_probs=22.5
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
....++.||.|+|||+|++.||-.+-
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45788999999999999999997654
No 430
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=75.95 E-value=9.4 Score=37.91 Aligned_cols=85 Identities=6% Similarity=-0.017 Sum_probs=50.1
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCccc--CCcEEEEeecccc------------------------c-cccc
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRVERGDVPQEL--KQTHVIKFHFAPV------------------------T-LRFM 138 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~L--kg~~visLdl~~l------------------------~-~~~~ 138 (850)
.+...+|+|++|+|||.++..++..+... ... .+..++-++.... . ....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLP---IDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSC---GGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCc---hhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 56778999999999999999998754321 100 1234444442210 0 0111
Q ss_pred ChhHHHHHHHHHHHHHhccccCCCCeEEEecchhhhhcC
Q 003070 139 KKEEVEMNLTELKRKVDSLTSVGGGAIIYTGDLKWTVDQ 177 (850)
Q Consensus 139 ~RgefE~RlkeL~~~V~~~~~~~~gvILfIdELh~lvga 177 (850)
+.+++.+.+..+.+.++. ...-+|+|||+..++..
T Consensus 100 ~~~~~~~~~~~~~~~~~~----~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVE----SRYALLIVDSATALYRT 134 (243)
T ss_dssp SHHHHHHHHHHHHHHHHH----SCEEEEEEETSSGGGC-
T ss_pred CHHHHHHHHHHHHHHHhc----CCceEEEEeCchHHHHH
Confidence 233444445555555654 45678999999998764
No 431
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=75.87 E-value=1.4 Score=43.36 Aligned_cols=37 Identities=11% Similarity=-0.031 Sum_probs=26.6
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcC--CCCceEEecCc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFG--STDLLFHIDMR 546 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfg--s~~~~i~idms 546 (850)
-.+.|.|+.|+|||+++..|+..+-. -.-..|..|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 35789999999999999999988642 23344554443
No 432
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=75.79 E-value=1.1 Score=43.54 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.4
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcC
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFG 535 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfg 535 (850)
..+.++||.|+|||.|.+.|+...|-
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 57889999999999999999988764
No 433
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=75.77 E-value=1.8 Score=47.44 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=32.6
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
....++++||+|+|||.+++.|+..+......++-+|..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 345678999999999999999998877777777888864
No 434
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=75.41 E-value=1.5 Score=47.87 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=22.8
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHh
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
...+.++||+|+|||+|++.||.++
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999986
No 435
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=75.33 E-value=2.4 Score=45.14 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=28.3
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
...+.|.|+.|+|||+++..||..+--....+.-+|..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 45777889999999999999998876444444444443
No 436
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=75.24 E-value=1.1 Score=48.95 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.7
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcC
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFG 535 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfg 535 (850)
--+.|-|++|+|||++++.||+.+-.
T Consensus 8 ~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 8 VRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 35678999999999999999998854
No 437
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=75.06 E-value=1.2 Score=43.36 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=22.6
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcC
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFG 535 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfg 535 (850)
..+.++||.|+|||.|.+.|+...|.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~ 31 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFN 31 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCC
Confidence 35789999999999999999987663
No 438
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=75.02 E-value=2.9 Score=46.90 Aligned_cols=56 Identities=13% Similarity=0.010 Sum_probs=40.1
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHh
Q 003070 474 QRSDLYKVLQENVPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 474 ~l~~L~~~L~~~V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
-++.+.-.+++- -..+++..|.+++...... .+.+.|+||+|+|||+|.++|+-++
T Consensus 38 ~l~~is~~i~~G--e~~~~~~~i~~~L~~~~~~--~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 38 ILNLIELRMRAG--NIQLTNSAISDALKEIDSS--VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp HHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHC--CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred HhhhccceecCC--CCcccchhhhhhhhhcccC--CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 344554445432 1356778888888877653 3578899999999999999999754
No 439
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=74.81 E-value=5.4 Score=39.04 Aligned_cols=24 Identities=17% Similarity=-0.054 Sum_probs=21.2
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHH
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMG 109 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~ 109 (850)
.+.-.+|+|++|+|||.++..++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 455689999999999999999987
No 440
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=74.65 E-value=1.8 Score=47.42 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=25.9
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcCCC
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFGST 537 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~ 537 (850)
.+-+++.||+|+|||.|-.+|+-.+||..
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~~al~g~~ 51 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAISFALFGNG 51 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHSCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcCCc
Confidence 35688999999999999999999999853
No 441
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=74.63 E-value=0.89 Score=48.35 Aligned_cols=38 Identities=8% Similarity=0.010 Sum_probs=24.4
Q ss_pred EEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR 548 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~ 548 (850)
.+.+.||.|+|||++|+.|++.+=........||+..|
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 47789999999999999999865211123455666554
No 442
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=74.61 E-value=1.4 Score=45.32 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=23.3
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
+.-++.++||+|+|||+|.+.|+-++-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 456888999999999999999997663
No 443
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=74.54 E-value=1.5 Score=43.48 Aligned_cols=23 Identities=26% Similarity=0.383 Sum_probs=21.0
Q ss_pred EEEEecCCchHHHHHHHHHHHHh
Q 003070 511 WFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
.+.+.|+.|+|||++|+.||+.+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999976
No 444
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=74.34 E-value=2.7 Score=40.39 Aligned_cols=26 Identities=12% Similarity=0.008 Sum_probs=23.5
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHhH
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGRV 111 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~rI 111 (850)
++++.+|+|.+|+|||-+.+.|++++
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999999876
No 445
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=74.04 E-value=1.7 Score=42.84 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=27.0
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhc--CCCCceEEecCcc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVF--GSTDLLFHIDMRK 547 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lf--gs~~~~i~idms~ 547 (850)
--+.|.||.|+|||++++.|+..+- |-.-..|..+...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 4578999999999999999998753 3233455555433
No 446
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=73.92 E-value=1.5 Score=45.98 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=23.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
.+..++.++||.|+|||+|.+.|+-++-
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456888999999999999999997763
No 447
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=73.57 E-value=1.4 Score=44.82 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=22.8
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
+...+.+.||.|+|||+|.+.|+-++-
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345788999999999999999997663
No 448
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=73.45 E-value=1.7 Score=44.98 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.6
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
..+.++||.|+|||+|.+.||-++-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6788999999999999999998764
No 449
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=73.39 E-value=1.6 Score=45.02 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=26.7
Q ss_pred hHHHHhhhCCCEEEeecccccc-CHHHHHHHHhhhc
Q 003070 558 MLMGTLKNYEKLVVLVEDIDLA-DPQFIKILADGFE 592 (850)
Q Consensus 558 ~l~e~vr~~P~sVvlldeiekA-~~~v~~~l~q~~d 592 (850)
.|+.++-.+|. |+||||---+ |+.....+++.+.
T Consensus 137 ~lAraL~~~p~-lllLDEPts~LD~~~~~~i~~~l~ 171 (237)
T 2cbz_A 137 SLARAVYSNAD-IYLFDDPLSAVDAHVGKHIFENVI 171 (237)
T ss_dssp HHHHHHHHCCS-EEEEESTTTTSCHHHHHHHHHHTT
T ss_pred HHHHHHhcCCC-EEEEeCcccccCHHHHHHHHHHHH
Confidence 47888888886 8899998765 7888888877773
No 450
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=73.26 E-value=2.8 Score=45.62 Aligned_cols=39 Identities=8% Similarity=0.184 Sum_probs=29.3
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
.-.++++.|..|||||++|.+||..+=......+-+|+.
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D 63 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTD 63 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECC
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 357888999999999999999998775444455555543
No 451
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=72.90 E-value=15 Score=35.90 Aligned_cols=23 Identities=13% Similarity=0.175 Sum_probs=19.8
Q ss_pred CeEEEEecCCchHHHHHHHHHHH
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAE 531 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~ 531 (850)
..-++++|++|+|||.|..+|..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 35788999999999999998764
No 452
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=72.85 E-value=1.7 Score=44.76 Aligned_cols=37 Identities=14% Similarity=0.071 Sum_probs=27.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEec
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID 544 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id 544 (850)
.+.-++.++||+|+|||+|.+.|+-++--+. --|.+|
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~-G~i~~~ 62 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQPTA-GEITID 62 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCSB-SCEEET
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCC-cEEEEC
Confidence 3456888999999999999999998764322 234554
No 453
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=72.73 E-value=3.6 Score=41.98 Aligned_cols=24 Identities=13% Similarity=0.075 Sum_probs=20.6
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHH
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMG 109 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~ 109 (850)
...|.+|||.+|||||.++..|+.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999988764
No 454
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=72.69 E-value=2.1 Score=42.62 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=27.5
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCccc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRKR 548 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~~ 548 (850)
..+.+.|+.|+|||++|+.||+.+ | +..||+..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l-g----~~vid~D~~ 46 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY-G----AHVVNVDRI 46 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH-C----CEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc-C----CEEEECcHH
Confidence 677899999999999999999975 3 455676543
No 455
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=72.59 E-value=2.1 Score=42.78 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=25.1
Q ss_pred CeEEEEecCCchHHHHHHHHHHHHhcC
Q 003070 509 ATWFLLQGNDTIGKRRLALSIAESVFG 535 (850)
Q Consensus 509 ~~~~lf~Gp~gvGKt~lA~~LA~~lfg 535 (850)
.+..++.||+|+|||.+..+|.-.+||
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 368899999999999999999999988
No 456
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=72.56 E-value=1.5 Score=46.48 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=22.8
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHh
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
+.-++.++||+|+|||+|.+.|+-++
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34688899999999999999999765
No 457
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=72.56 E-value=5.2 Score=37.94 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=21.1
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHHh
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMGR 110 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~r 110 (850)
.+.+.+|||.+|||||.++..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 4567999999999999999877654
No 458
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=72.55 E-value=1.7 Score=45.70 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=20.2
Q ss_pred eEEEEecCCchHHHHHHHHHHH
Q 003070 510 TWFLLQGNDTIGKRRLALSIAE 531 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~ 531 (850)
-.+.+.|+.|+|||++|+.||+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999996
No 459
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=72.38 E-value=1.9 Score=45.14 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=22.8
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHh
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
+...+.++||+|+|||+|.+.|+-++
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44688899999999999999999864
No 460
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=72.13 E-value=2.9 Score=48.28 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=34.8
Q ss_pred CCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHHHHHhcC
Q 003070 487 PWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSIAESVFG 535 (850)
Q Consensus 487 ~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~LA~~lfg 535 (850)
+.|.+||..+.+++.. |+ .-+++.+|||.|||.+|-.++..+..
T Consensus 181 ~~Q~~ai~~~~~~~~~---~~--~~~ll~~~TGsGKT~~~~~~~~~l~~ 224 (590)
T 3h1t_A 181 YYQQIAINRAVQSVLQ---GK--KRSLITMATGTGKTVVAFQISWKLWS 224 (590)
T ss_dssp HHHHHHHHHHHHHHHT---TC--SEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc---CC--CceEEEecCCCChHHHHHHHHHHHHh
Confidence 5699999998887753 32 34578899999999999999877753
No 461
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=72.08 E-value=1.7 Score=45.62 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=23.8
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
.+..++.++||.|+|||+|.+.|+-++-
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 3456888999999999999999997763
No 462
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=71.91 E-value=5.7 Score=43.19 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=23.8
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
+...+.|+|++|+|||+|..+|+..+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 467899999999999999999998653
No 463
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=71.75 E-value=2 Score=44.53 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.1
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHH
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAES 532 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~ 532 (850)
+...+.++||+|+|||+|.+.|+-+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457889999999999999999986
No 464
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=71.59 E-value=5.3 Score=38.14 Aligned_cols=26 Identities=8% Similarity=0.127 Sum_probs=22.1
Q ss_pred CCCCCeEEEcCCCchHHHHHHHHHHh
Q 003070 85 KKRRNTVIVGDCLSITDALVFDFMGR 110 (850)
Q Consensus 85 r~K~NPVLVGe~gvgktAvVegla~r 110 (850)
.+.-+.+|||.+|||||.++..|+..
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999888754
No 465
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=71.53 E-value=2.6 Score=40.40 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=19.8
Q ss_pred CCCCeEEEcCCCchHHHHHHHHHH
Q 003070 86 KRRNTVIVGDCLSITDALVFDFMG 109 (850)
Q Consensus 86 ~K~NPVLVGe~gvgktAvVegla~ 109 (850)
.+-+.+|||.+|||||.++..|..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999877754
No 466
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=71.48 E-value=2 Score=43.49 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=25.8
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCcc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMRK 547 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms~ 547 (850)
-.+.+.|+.|+|||++++.||+.+ | +..+|+..
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~l-g----~~~~d~d~ 49 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDF-G----FTYLDTGA 49 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH-C----CEEEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-C----CceecCCC
Confidence 457799999999999999999976 3 34555543
No 467
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=71.31 E-value=9 Score=42.86 Aligned_cols=78 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHH------------------
Q 003070 85 KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMN------------------ 146 (850)
Q Consensus 85 r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~R------------------ 146 (850)
..+.-.+|.|.||+|||+++-.+|..+..+. |..|+-+.+. |+..++-.|
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~------g~~vl~~slE------~~~~~l~~R~~~~~~~i~~~~l~~g~l 265 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKE------GVGVGIYSLE------MPAAQLTLRMMCSEARIDMNRVRLGQL 265 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTT------CCCEEEEESS------SCHHHHHHHHHHHHTTCCTTTCCGGGC
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC------CCeEEEEECC------CCHHHHHHHHHHHHcCCCHHHHhCCCC
Q ss_pred -----------------------------HHHHHHHHhccccCCCCeEEEecchhhh
Q 003070 147 -----------------------------LTELKRKVDSLTSVGGGAIIYTGDLKWT 174 (850)
Q Consensus 147 -----------------------------lkeL~~~V~~~~~~~~gvILfIdELh~l 174 (850)
+.++...++......+.-+++||.|+.+
T Consensus 266 ~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~ 322 (444)
T 2q6t_A 266 TDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLM 322 (444)
T ss_dssp CHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred CHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhc
No 468
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=71.28 E-value=1.8 Score=44.62 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=23.1
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
+..++.++||+|+|||+|.+.|+-++-
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345788999999999999999997763
No 469
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=71.26 E-value=19 Score=41.18 Aligned_cols=38 Identities=13% Similarity=0.239 Sum_probs=31.4
Q ss_pred HHHHHHhc-CCCCCeEEEcCCCchHHHHHHHHHHhHHhC
Q 003070 77 LVFEVFLR-KKRRNTVIVGDCLSITDALVFDFMGRVERG 114 (850)
Q Consensus 77 rVieIL~R-r~K~NPVLVGe~gvgktAvVegla~rI~~G 114 (850)
|+|+.|.- .+.-.-.|+|.+|+|||.++..++..|.+.
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~ 180 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKA 180 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTT
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhh
Confidence 78999873 245567788999999999999999988665
No 470
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=71.00 E-value=2.1 Score=39.43 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.4
Q ss_pred EEEecCCchHHHHHHHHHHHHh
Q 003070 512 FLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
++++|++|+|||.|...|...-
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999998643
No 471
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=70.99 E-value=1.9 Score=45.06 Aligned_cols=35 Identities=20% Similarity=0.089 Sum_probs=27.2
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEec
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID 544 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id 544 (850)
+.-++.++||+|+|||+|.+.|+-++- . .--|.+|
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~-~G~I~i~ 79 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD-A-EGDIKIG 79 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC-C-EEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC-C-CeEEEEC
Confidence 456888999999999999999998763 2 3445554
No 472
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=70.97 E-value=6.8 Score=42.28 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=30.5
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhc--CCCCceEEecCc
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVF--GSTDLLFHIDMR 546 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lf--gs~~~~i~idms 546 (850)
.+...+.+.|++|+|||+++..|+..+. |..-.++..|+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 4557788999999999999999998875 444455555553
No 473
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=70.73 E-value=3.2 Score=41.49 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=27.1
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHH-hc--CCCCceEEecCc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAES-VF--GSTDLLFHIDMR 546 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~-lf--gs~~~~i~idms 546 (850)
+....++.|++|+|||.+|..+|.. .- |..-.++.+.|+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~ 70 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER 70 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence 4467889999999999999998754 32 222334455555
No 474
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=70.72 E-value=1.2 Score=48.55 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=19.4
Q ss_pred EEEEecCCchHHHHHHHHHHHHhc
Q 003070 511 WFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 511 ~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
-+.|-|++|+|||++++.||+.+-
T Consensus 6 fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 457899999999999999999874
No 475
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=70.66 E-value=1.9 Score=44.99 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=23.1
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
+.-.+.++||.|+|||+|.+.|+-++-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445788999999999999999997763
No 476
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=70.60 E-value=1.8 Score=43.52 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=16.2
Q ss_pred eEEEcCCCchHHHHHHHHHHh
Q 003070 90 TVIVGDCLSITDALVFDFMGR 110 (850)
Q Consensus 90 PVLVGe~gvgktAvVegla~r 110 (850)
-++.|.||+|||.++..++..
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 368899999999987665433
No 477
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=70.59 E-value=7.2 Score=49.81 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=23.6
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHh
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
++.-...++||+|+|||+|++.|+.++
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456778899999999999999998775
No 478
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=70.48 E-value=1.9 Score=44.90 Aligned_cols=27 Identities=26% Similarity=0.210 Sum_probs=23.2
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
+...+.++||.|+|||+|.+.|+-++-
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345788999999999999999997763
No 479
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=70.44 E-value=2.5 Score=46.24 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.2
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
+...+.++||+|+|||+|.+.||-++-
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 346788999999999999999997763
No 480
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=70.19 E-value=2.4 Score=47.98 Aligned_cols=34 Identities=12% Similarity=0.011 Sum_probs=25.9
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEe
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHI 543 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~i 543 (850)
.-++++|.+|+|||++|+.||+.++-..-....+
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~ 73 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREF 73 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhccCCCceEE
Confidence 4678999999999999999999876333333333
No 481
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=70.17 E-value=2 Score=44.96 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.7
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHh
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESV 533 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~l 533 (850)
+.-++.++||+|+|||+|.+.|+-++
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44678899999999999999999765
No 482
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=70.09 E-value=13 Score=43.95 Aligned_cols=40 Identities=20% Similarity=0.200 Sum_probs=27.3
Q ss_pred CCCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHH-HHHHHhc
Q 003070 486 VPWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLAL-SIAESVF 534 (850)
Q Consensus 486 V~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~-~LA~~lf 534 (850)
-++|.++++.+.. . ...+++.||||.|||..+- .+.+.+.
T Consensus 32 ~~~Q~~~i~~~~~------~---~~~~lv~apTGsGKT~~~~l~il~~~~ 72 (715)
T 2va8_A 32 NPPQTEAVKKGLL------E---GNRLLLTSPTGSGKTLIAEMGIISFLL 72 (715)
T ss_dssp CHHHHHHHHTTTT------T---TCCEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc------C---CCcEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 3678888876211 1 3478999999999999984 3334444
No 483
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=70.09 E-value=2 Score=45.15 Aligned_cols=28 Identities=18% Similarity=0.090 Sum_probs=24.0
Q ss_pred CCCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 507 KKATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 507 k~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
.+.-++.++||+|+|||+|.+.|+-++-
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456888999999999999999998764
No 484
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=69.79 E-value=12 Score=44.43 Aligned_cols=108 Identities=15% Similarity=0.163 Sum_probs=60.7
Q ss_pred CCCchHHHHH-HHHHHHHhhhCCCCeEEEEecCCchHHHHHH-HHHHHHhcCCCCceEEecCc------------cccC-
Q 003070 486 VPWQFDSIHS-IVEVLVECKSAKKATWFLLQGNDTIGKRRLA-LSIAESVFGSTDLLFHIDMR------------KRND- 550 (850)
Q Consensus 486 V~gQ~eai~~-Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA-~~LA~~lfgs~~~~i~idms------------~~~~- 550 (850)
-++|.+++.. +. . ...+++.||||.|||.++ ..+.+.+.......+.+-.. .+.+
T Consensus 25 ~~~Q~~~i~~~~~-------~---~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~ 94 (720)
T 2zj8_A 25 YPPQAEALKSGIL-------E---GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKI 94 (720)
T ss_dssp CHHHHHHHTTTGG-------G---TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGG
T ss_pred CHHHHHHHHHHhc-------C---CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhc
Confidence 3678888876 32 1 247899999999999988 45555554222333333111 1000
Q ss_pred --------C----------CCCc----hhhHHHHhhhCC-----CEEEeecccccc----CHHHHHHHHhhhccCccCce
Q 003070 551 --------G----------VSSH----SEMLMGTLKNYE-----KLVVLVEDIDLA----DPQFIKILADGFETENFGKV 599 (850)
Q Consensus 551 --------~----------~~~~----~~~l~e~vr~~P-----~sVvlldeiekA----~~~v~~~l~q~~d~G~l~n~ 599 (850)
+ .+.. .+.|...+++.+ +++|++||++.. .......++..+.. .--
T Consensus 95 g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~---~~~ 171 (720)
T 2zj8_A 95 GLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLG---KAQ 171 (720)
T ss_dssp TCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBT---TBE
T ss_pred CCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhc---CCe
Confidence 0 0000 134555555544 489999999963 34455555555542 234
Q ss_pred EEEEecC
Q 003070 600 IFVLTKG 606 (850)
Q Consensus 600 Iii~Tsn 606 (850)
||+||..
T Consensus 172 ii~lSAT 178 (720)
T 2zj8_A 172 IIGLSAT 178 (720)
T ss_dssp EEEEECC
T ss_pred EEEEcCC
Confidence 6667666
No 485
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=69.79 E-value=1.9 Score=45.17 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=23.4
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
+.-++.++||+|+|||+|.+.|+-++-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 446788999999999999999998764
No 486
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=69.75 E-value=1.5 Score=48.61 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=20.2
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
--+.|-|++|+|||++++.|++.+-
T Consensus 50 ~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 50 LRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp EEEEECSSTTSSHHHHHHHHHC---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4577899999999999999999874
No 487
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=69.75 E-value=2.3 Score=46.82 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=23.5
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
+.-++.++||+|+|||+|.+.||-++-
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 446888999999999999999998763
No 488
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=69.43 E-value=3.3 Score=40.85 Aligned_cols=41 Identities=17% Similarity=0.041 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHHhcCCCCCeEEEcCCCchHHHHHHHHHHhH
Q 003070 71 SKEDIKLVFEVFLRKKRRNTVIVGDCLSITDALVFDFMGRV 111 (850)
Q Consensus 71 RdeeirrVieIL~Rr~K~NPVLVGe~gvgktAvVegla~rI 111 (850)
.++.+.++-..+.+++-.+.+|+|.+|||||.++..|+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34445555555555566789999999999999999998775
No 489
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=69.24 E-value=2.4 Score=43.84 Aligned_cols=32 Identities=25% Similarity=0.194 Sum_probs=25.6
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhcCCCCceEEecCc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHIDMR 546 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~idms 546 (850)
.-+-|+||+|+||+++|+.||+.+ .+..|++.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~-----g~~~is~g 40 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF-----GIPQISTG 40 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH-----TCCEECHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh-----CCCeeech
Confidence 346799999999999999999977 35556554
No 490
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=69.24 E-value=2.1 Score=44.57 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=26.6
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhcCCCCceEEec
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVFGSTDLLFHID 544 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lfgs~~~~i~id 544 (850)
+..++.++||.|+|||+|.+.|+-++--+ --|.++
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~~ 59 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTSGK--GSIQFA 59 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEET
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEEC
Confidence 34578899999999999999999876433 335554
No 491
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=69.14 E-value=7.1 Score=49.88 Aligned_cols=48 Identities=15% Similarity=0.324 Sum_probs=33.9
Q ss_pred hHHHHhhhCCCEEEeecccccc-CHHHHHHHHhhhccCccCceEEEEecC
Q 003070 558 MLMGTLKNYEKLVVLVEDIDLA-DPQFIKILADGFETENFGKVIFVLTKG 606 (850)
Q Consensus 558 ~l~e~vr~~P~sVvlldeiekA-~~~v~~~l~q~~d~G~l~n~Iii~Tsn 606 (850)
.|+.++-++|. |++|||---+ |+.....+.+++++-.=..|||+.|-+
T Consensus 1181 ~iARal~~~p~-iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~ 1229 (1284)
T 3g5u_A 1181 AIARALVRQPH-ILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHR 1229 (1284)
T ss_dssp HHHHHHHHCCS-SEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSC
T ss_pred HHHHHHHcCCC-EEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecC
Confidence 48999999997 9999998765 777777777776541112466666554
No 492
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=69.10 E-value=19 Score=32.88 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=21.6
Q ss_pred EEEecCCchHHHHHHHHHHHHhcCC
Q 003070 512 FLLQGNDTIGKRRLALSIAESVFGS 536 (850)
Q Consensus 512 ~lf~Gp~gvGKt~lA~~LA~~lfgs 536 (850)
++++|++|+|||.|...|..--|-+
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~~~~ 27 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGEIVT 27 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHcCCcCc
Confidence 6799999999999999998766644
No 493
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=69.07 E-value=3.8 Score=40.49 Aligned_cols=28 Identities=11% Similarity=0.040 Sum_probs=23.3
Q ss_pred cCCCCCeEEEcCCCchHHHHHHHHHHhH
Q 003070 84 RKKRRNTVIVGDCLSITDALVFDFMGRV 111 (850)
Q Consensus 84 Rr~K~NPVLVGe~gvgktAvVegla~rI 111 (850)
.++..+.+|||.+|||||.++..|+...
T Consensus 35 ~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 35 KHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3455678999999999999999888764
No 494
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=69.06 E-value=2.3 Score=39.33 Aligned_cols=25 Identities=20% Similarity=0.466 Sum_probs=21.2
Q ss_pred eEEEEecCCchHHHHHHHHHHHHhc
Q 003070 510 TWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
.-++++|++|+|||.|...|..--|
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~ 30 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIF 30 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC
Confidence 3578999999999999999986544
No 495
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=69.02 E-value=12 Score=41.95 Aligned_cols=82 Identities=13% Similarity=0.216 Sum_probs=0.0
Q ss_pred CCCCCeEEEcCCCchHHHHHHHHHHhHHhCCCCcccCCcEEEEeecccccccccChhHHHHH------------------
Q 003070 85 KKRRNTVIVGDCLSITDALVFDFMGRVERGDVPQELKQTHVIKFHFAPVTLRFMKKEEVEMN------------------ 146 (850)
Q Consensus 85 r~K~NPVLVGe~gvgktAvVegla~rI~~G~VP~~Lkg~~visLdl~~l~~~~~~RgefE~R------------------ 146 (850)
..+.-.+|.|.||+|||+++-.++..+.... |..|+-+.+. ++..++-.|
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~------g~~Vl~~s~E------~s~~~l~~r~~~~~~~~~~~~l~~g~l 268 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKT------NENVAIFSLE------MSAQQLVMRMLCAEGNINAQNLRTGKL 268 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHS------SCCEEEEESS------SCHHHHHHHHHHHHHTCCHHHHHTSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhC------CCcEEEEECC------CCHHHHHHHHHHHHcCCCHHHHhcCCC
Q ss_pred -----------------------------HHHHHHHHhccccCCCCeEEEecchhhhhcCC
Q 003070 147 -----------------------------LTELKRKVDSLTSVGGGAIIYTGDLKWTVDQQ 178 (850)
Q Consensus 147 -----------------------------lkeL~~~V~~~~~~~~gvILfIdELh~lvgag 178 (850)
+.++...++......+.-+++||+|..+....
T Consensus 269 ~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~~ 329 (454)
T 2r6a_A 269 TPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGSG 329 (454)
T ss_dssp CHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCSC
T ss_pred CHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccCC
No 496
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=68.92 E-value=3.6 Score=41.62 Aligned_cols=33 Identities=12% Similarity=0.290 Sum_probs=23.8
Q ss_pred CCchHHHHHHHHHHHHhhhCCCCeEEEEecCCchHHHHHHHHH
Q 003070 487 PWQFDSIHSIVEVLVECKSAKKATWFLLQGNDTIGKRRLALSI 529 (850)
Q Consensus 487 ~gQ~eai~~Ia~av~~~r~gk~~~~~lf~Gp~gvGKt~lA~~L 529 (850)
.-|.++++.|.+ | ..+++.||||+|||.+...+
T Consensus 64 ~~q~~~i~~i~~-------g---~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 64 KFESEILEAISQ-------N---SVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp GGHHHHHHHHHH-------C---SEEEEECCTTSSHHHHHHHH
T ss_pred HHHHHHHHHHhc-------C---CEEEEEeCCCCCcHHhHHHH
Confidence 457777776642 2 47889999999999755544
No 497
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=68.88 E-value=2.1 Score=44.28 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=23.2
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
+.-.+.++||+|+|||+|.+.|+-++-
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345788999999999999999998764
No 498
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=68.79 E-value=2.3 Score=40.50 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=19.8
Q ss_pred eEEEEecCCchHHHHHHHHHHH
Q 003070 510 TWFLLQGNDTIGKRRLALSIAE 531 (850)
Q Consensus 510 ~~~lf~Gp~gvGKt~lA~~LA~ 531 (850)
.-+.|+|++|+|||.|...|+.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4678999999999999999985
No 499
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=68.77 E-value=11 Score=38.84 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=20.5
Q ss_pred CeEEEcCCCchHHHHHHHHHHhH
Q 003070 89 NTVIVGDCLSITDALVFDFMGRV 111 (850)
Q Consensus 89 NPVLVGe~gvgktAvVegla~rI 111 (850)
.-+|+|.+|+|||.+++.||++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 35789999999999999999875
No 500
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=68.72 E-value=2.1 Score=44.48 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=23.0
Q ss_pred CCeEEEEecCCchHHHHHHHHHHHHhc
Q 003070 508 KATWFLLQGNDTIGKRRLALSIAESVF 534 (850)
Q Consensus 508 ~~~~~lf~Gp~gvGKt~lA~~LA~~lf 534 (850)
+..++.++||+|+|||+|.+.|+-++-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345788999999999999999997763
Done!