Query 003071
Match_columns 850
No_of_seqs 379 out of 1671
Neff 5.4
Searched_HMMs 46136
Date Thu Mar 28 16:27:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 1.4E-75 3E-80 606.0 19.4 211 169-382 1-229 (229)
2 PF08670 MEKHLA: MEKHLA domain 100.0 1.1E-58 2.3E-63 452.0 16.3 146 705-850 1-148 (148)
3 PF01852 START: START domain; 99.7 9.2E-18 2E-22 170.8 10.2 200 174-379 1-201 (206)
4 smart00234 START in StAR and p 99.7 3.7E-16 8E-21 159.5 16.4 199 175-382 2-205 (206)
5 KOG0483 Transcription factor H 99.6 2E-16 4.4E-21 161.9 8.1 114 23-144 50-164 (198)
6 KOG0842 Transcription factor t 99.5 1.2E-14 2.7E-19 156.8 6.5 68 20-91 150-217 (307)
7 KOG0487 Transcription factor A 99.5 1.3E-14 2.9E-19 156.6 5.6 68 21-92 233-300 (308)
8 KOG0488 Transcription factor B 99.5 1.6E-14 3.5E-19 157.7 5.5 66 19-88 168-233 (309)
9 KOG0843 Transcription factor E 99.5 3.8E-14 8.1E-19 140.9 4.8 64 22-89 101-164 (197)
10 KOG0489 Transcription factor z 99.5 1.7E-14 3.6E-19 154.6 2.2 62 22-87 158-219 (261)
11 KOG0850 Transcription factor D 99.4 1.5E-13 3.2E-18 141.3 5.0 66 18-87 117-182 (245)
12 KOG0492 Transcription factor M 99.4 2.2E-13 4.8E-18 137.8 5.9 66 18-87 139-204 (246)
13 KOG0494 Transcription factor C 99.4 4.6E-13 1E-17 139.0 5.1 66 19-88 136-202 (332)
14 KOG0848 Transcription factor C 99.3 2.2E-13 4.8E-18 142.2 1.9 59 25-87 201-259 (317)
15 KOG0485 Transcription factor N 99.3 4.4E-13 9.6E-18 136.3 4.0 61 22-86 103-163 (268)
16 KOG0484 Transcription factor P 99.3 3.6E-13 7.8E-18 123.0 1.7 61 22-86 16-76 (125)
17 PF00046 Homeobox: Homeobox do 99.3 4.5E-13 9.7E-18 110.7 2.1 57 24-84 1-57 (57)
18 KOG0493 Transcription factor E 99.3 2.3E-12 5E-17 134.0 4.2 58 23-84 246-303 (342)
19 KOG2251 Homeobox transcription 99.2 5.7E-12 1.2E-16 129.3 4.6 65 19-87 33-97 (228)
20 cd00177 START Lipid-binding ST 99.2 1.3E-10 2.9E-15 115.7 12.9 185 178-379 2-189 (193)
21 KOG0844 Transcription factor E 99.1 2E-11 4.2E-16 129.4 3.5 59 24-86 182-240 (408)
22 smart00389 HOX Homeodomain. DN 99.1 2E-11 4.2E-16 100.1 2.1 55 25-83 2-56 (56)
23 KOG0486 Transcription factor P 99.1 5.5E-11 1.2E-15 127.0 5.3 63 22-88 111-173 (351)
24 cd00086 homeodomain Homeodomai 99.1 3.2E-11 6.9E-16 99.5 2.6 56 25-84 2-57 (59)
25 TIGR01565 homeo_ZF_HD homeobox 99.1 1.2E-10 2.6E-15 97.6 5.5 52 24-79 2-57 (58)
26 COG5576 Homeodomain-containing 99.1 8.4E-11 1.8E-15 117.0 5.3 62 22-87 50-111 (156)
27 KOG0491 Transcription factor B 99.1 1.3E-11 2.8E-16 121.2 -1.1 63 22-88 99-161 (194)
28 KOG3802 Transcription factor O 99.1 1.2E-10 2.7E-15 128.5 5.0 59 22-84 293-351 (398)
29 cd08868 START_STARD1_3_like Ch 99.0 5.4E-09 1.2E-13 108.2 15.0 194 172-384 6-208 (208)
30 cd08871 START_STARD10-like Lip 99.0 7.4E-09 1.6E-13 108.2 15.0 192 176-386 8-205 (222)
31 cd08867 START_STARD4_5_6-like 99.0 1.3E-08 2.8E-13 105.2 15.2 189 172-379 3-202 (206)
32 KOG0847 Transcription factor, 98.9 2.3E-10 5E-15 116.8 1.8 61 24-88 168-228 (288)
33 cd08904 START_STARD6-like Lipi 98.9 1.5E-08 3.3E-13 105.2 14.7 170 173-356 4-180 (204)
34 KOG4577 Transcription factor L 98.9 9.1E-10 2E-14 116.3 4.3 60 23-86 167-226 (383)
35 cd08903 START_STARD5-like Lipi 98.8 1.1E-07 2.4E-12 98.9 16.0 189 172-379 3-202 (208)
36 cd08905 START_STARD1-like Chol 98.8 7E-08 1.5E-12 100.5 13.0 190 172-379 6-203 (209)
37 KOG0490 Transcription factor, 98.6 2.1E-08 4.5E-13 104.3 4.0 62 21-86 58-119 (235)
38 PLN00188 enhanced disease resi 98.6 2E-07 4.3E-12 110.4 10.8 129 219-355 227-365 (719)
39 cd08869 START_RhoGAP C-termina 98.5 6.5E-07 1.4E-11 92.4 11.7 166 177-357 4-173 (197)
40 cd08906 START_STARD3-like Chol 98.5 2.4E-06 5.1E-11 89.2 15.0 190 172-379 6-203 (209)
41 cd08909 START_STARD13-like C-t 98.5 7.1E-07 1.5E-11 93.0 10.9 128 219-357 52-181 (205)
42 KOG0849 Transcription factor P 98.4 1.5E-07 3.3E-12 105.3 3.9 65 18-86 171-235 (354)
43 KOG1168 Transcription factor A 98.3 4.2E-07 9.2E-12 96.5 4.0 61 22-86 308-368 (385)
44 cd08902 START_STARD4-like Lipi 98.2 1E-05 2.3E-10 83.7 10.9 176 173-367 4-186 (202)
45 cd08908 START_STARD12-like C-t 98.1 3E-05 6.5E-10 80.9 11.4 167 175-357 10-180 (204)
46 KOG0775 Transcription factor S 98.0 3.6E-06 7.7E-11 89.4 3.5 51 30-84 183-233 (304)
47 cd08874 START_STARD9-like C-te 98.0 2.3E-05 5E-10 81.8 8.4 127 222-357 48-182 (205)
48 PF13426 PAS_9: PAS domain; PD 97.8 0.00011 2.3E-09 64.7 9.7 101 743-846 1-101 (104)
49 cd08910 START_STARD2-like Lipi 97.8 0.00017 3.8E-09 75.1 11.8 175 189-382 22-205 (207)
50 cd08870 START_STARD2_7-like Li 97.7 0.00079 1.7E-08 70.2 15.0 190 179-382 7-207 (209)
51 cd08907 START_STARD8-like C-te 97.7 0.00057 1.2E-08 71.2 12.9 168 174-357 9-181 (205)
52 cd08872 START_STARD11-like Cer 97.6 0.00048 1.1E-08 73.4 11.9 172 174-356 6-201 (235)
53 KOG0774 Transcription factor P 97.6 3.3E-05 7.1E-10 81.5 2.9 57 24-84 189-248 (334)
54 cd08877 START_2 Uncharacterize 97.5 0.0016 3.4E-08 68.0 13.8 197 173-382 4-213 (215)
55 cd08876 START_1 Uncharacterize 97.4 0.00064 1.4E-08 69.2 9.7 146 219-379 41-191 (195)
56 cd08873 START_STARD14_15-like 97.4 0.00048 1E-08 73.5 8.6 121 220-349 78-203 (235)
57 cd08911 START_STARD7-like Lipi 97.1 0.0023 4.9E-08 66.8 9.9 148 219-379 45-201 (207)
58 PF05920 Homeobox_KN: Homeobox 97.1 7.2E-05 1.6E-09 58.5 -1.0 34 44-81 7-40 (40)
59 cd08913 START_STARD14-like Lip 97.1 0.0047 1E-07 66.2 11.7 123 222-358 84-215 (240)
60 cd08914 START_STARD15-like Lip 96.9 0.0048 1E-07 65.9 10.2 131 220-362 79-215 (236)
61 KOG0490 Transcription factor, 96.9 0.00083 1.8E-08 70.0 3.8 62 22-87 152-213 (235)
62 KOG2252 CCAAT displacement pro 96.8 0.0009 2E-08 77.6 3.5 58 22-83 419-476 (558)
63 PF00989 PAS: PAS fold; Inter 96.8 0.016 3.5E-07 51.7 11.0 108 735-845 2-111 (113)
64 PF08448 PAS_4: PAS fold; Int 96.2 0.036 7.8E-07 49.2 9.4 104 741-848 3-106 (110)
65 PRK13557 histidine kinase; Pro 96.0 0.047 1E-06 62.8 11.6 112 733-845 29-142 (540)
66 KOG1146 Homeobox protein [Gene 95.2 0.015 3.2E-07 73.4 3.9 63 22-88 902-964 (1406)
67 cd08871 START_STARD10-like Lip 95.1 1.4 3.1E-05 46.2 18.1 65 412-497 13-79 (222)
68 PRK13559 hypothetical protein; 94.4 0.26 5.7E-06 54.3 10.8 113 733-846 42-156 (361)
69 cd08869 START_RhoGAP C-termina 94.0 4.4 9.5E-05 42.1 18.1 57 422-497 17-73 (197)
70 cd08904 START_STARD6-like Lipi 93.6 3.3 7.1E-05 43.7 16.3 174 422-687 20-203 (204)
71 TIGR00229 sensory_box PAS doma 93.3 1.2 2.5E-05 36.6 10.4 107 735-845 4-112 (124)
72 KOG0773 Transcription factor M 93.3 0.045 9.7E-07 61.3 2.2 58 23-84 239-299 (342)
73 cd08907 START_STARD8-like C-te 92.8 9.4 0.0002 40.4 18.1 58 421-497 24-81 (205)
74 PRK11091 aerobic respiration c 92.4 0.66 1.4E-05 57.1 10.8 110 734-846 155-265 (779)
75 cd08877 START_2 Uncharacterize 92.2 6.3 0.00014 41.2 16.2 72 403-497 4-77 (215)
76 PRK09413 IS2 repressor TnpA; R 91.9 0.21 4.6E-06 47.9 4.5 94 25-131 8-102 (121)
77 TIGR02938 nifL_nitrog nitrogen 91.8 0.65 1.4E-05 52.4 9.0 110 734-846 4-114 (494)
78 cd00130 PAS PAS domain; PAS mo 91.3 3.1 6.8E-05 32.0 10.1 98 743-844 2-100 (103)
79 cd08874 START_STARD9-like C-te 90.6 1.4 3.1E-05 46.3 9.4 56 421-497 19-76 (205)
80 PF11569 Homez: Homeodomain le 90.5 0.057 1.2E-06 45.4 -0.8 42 34-79 9-50 (56)
81 PF00170 bZIP_1: bZIP transcri 90.3 1.3 2.8E-05 37.9 7.3 45 79-123 19-63 (64)
82 cd08864 SRPBCC_DUF3074 DUF3074 89.5 0.52 1.1E-05 49.7 5.1 110 242-357 66-184 (208)
83 TIGR02040 PpsR-CrtJ transcript 89.3 1.7 3.7E-05 49.9 9.6 94 736-834 254-349 (442)
84 cd00177 START Lipid-binding ST 89.1 7.3 0.00016 38.7 12.9 126 424-605 15-148 (193)
85 KOG4005 Transcription factor X 88.9 3.5 7.6E-05 44.1 10.6 56 76-131 82-142 (292)
86 PRK13560 hypothetical protein; 88.8 2.3 5E-05 51.7 10.8 110 735-846 205-316 (807)
87 PRK13558 bacterio-opsin activa 88.8 2.7 5.8E-05 50.9 11.2 109 737-846 151-261 (665)
88 KOG2761 START domain-containin 87.8 1.1 2.5E-05 47.4 6.2 111 228-347 63-183 (219)
89 PF13188 PAS_8: PAS domain; PD 87.7 0.66 1.4E-05 38.5 3.6 40 735-780 2-42 (64)
90 TIGR02040 PpsR-CrtJ transcript 87.6 3.1 6.8E-05 47.7 10.3 84 735-820 134-218 (442)
91 KOG4196 bZIP transcription fac 86.1 5.6 0.00012 39.0 9.3 38 28-81 22-59 (135)
92 cd08868 START_STARD1_3_like Ch 85.8 19 0.00041 37.4 14.1 129 423-606 23-160 (208)
93 cd08909 START_STARD13-like C-t 85.1 15 0.00031 39.0 12.8 55 424-497 27-81 (205)
94 smart00338 BRLZ basic region l 83.8 4.3 9.4E-05 34.7 6.8 34 97-130 30-63 (65)
95 cd08906 START_STARD3-like Chol 82.9 66 0.0014 33.8 17.4 71 405-497 8-81 (209)
96 cd08908 START_STARD12-like C-t 82.9 41 0.0009 35.5 15.0 54 425-497 28-81 (204)
97 smart00234 START in StAR and p 82.2 21 0.00045 36.5 12.4 105 465-606 43-157 (206)
98 PRK11359 cyclic-di-GMP phospho 82.2 7.2 0.00016 47.8 10.6 102 742-846 145-247 (799)
99 PRK11073 glnL nitrogen regulat 81.4 4.4 9.5E-05 44.3 7.6 91 736-832 9-100 (348)
100 PRK09776 putative diguanylate 80.5 7.3 0.00016 49.6 10.2 109 733-844 282-392 (1092)
101 cd08876 START_1 Uncharacterize 79.4 3.3 7.3E-05 42.1 5.4 57 421-497 14-72 (195)
102 PRK10060 RNase II stability mo 78.1 10 0.00023 46.3 10.1 88 735-824 112-201 (663)
103 cd08866 SRPBCC_11 Ligand-bindi 76.5 32 0.0007 32.6 11.1 132 222-382 2-143 (144)
104 PF08447 PAS_3: PAS fold; Int 76.4 14 0.0003 31.9 7.8 82 758-841 2-88 (91)
105 PF02183 HALZ: Homeobox associ 76.3 8.7 0.00019 31.1 5.8 38 93-130 5-42 (45)
106 cd08873 START_STARD14_15-like 74.8 4.4 9.5E-05 43.7 4.9 54 422-497 53-108 (235)
107 cd08870 START_STARD2_7-like Li 74.0 6.5 0.00014 41.0 5.9 58 423-497 21-82 (209)
108 PF01852 START: START domain; 71.6 44 0.00096 34.0 11.3 149 406-606 2-157 (206)
109 KOG4571 Activating transcripti 71.4 9.4 0.0002 42.2 6.5 32 98-129 253-284 (294)
110 PRK11360 sensory histidine kin 71.3 30 0.00065 40.1 11.2 107 735-846 263-370 (607)
111 cd08910 START_STARD2-like Lipi 71.3 7.5 0.00016 40.7 5.6 58 421-497 22-81 (207)
112 cd08875 START_ArGLABRA2_like C 70.9 35 0.00075 36.9 10.5 163 402-606 3-181 (229)
113 smart00340 HALZ homeobox assoc 69.1 8.3 0.00018 30.9 4.0 26 96-121 8-33 (44)
114 PRK09776 putative diguanylate 68.8 26 0.00056 44.8 10.7 107 736-846 538-650 (1092)
115 TIGR00219 mreC rod shape-deter 68.6 9.4 0.0002 42.2 5.9 36 97-132 70-109 (283)
116 PF07716 bZIP_2: Basic region 68.4 15 0.00033 30.4 5.7 25 108-132 26-50 (54)
117 PF06005 DUF904: Protein of un 68.1 26 0.00056 31.2 7.4 35 97-131 22-56 (72)
118 KOG3119 Basic region leucine z 67.4 12 0.00025 41.2 6.3 25 109-133 224-248 (269)
119 KOG4005 Transcription factor X 67.3 20 0.00043 38.6 7.6 47 85-131 103-149 (292)
120 PRK00888 ftsB cell division pr 66.4 13 0.00027 35.3 5.5 45 70-114 16-62 (105)
121 cd05018 CoxG Carbon monoxide d 66.0 59 0.0013 30.5 10.1 120 223-363 5-124 (144)
122 PF06005 DUF904: Protein of un 64.8 32 0.0007 30.6 7.3 47 87-133 19-65 (72)
123 KOG3623 Homeobox transcription 64.7 3.4 7.5E-05 50.2 1.6 48 35-86 568-615 (1007)
124 PRK13922 rod shape-determining 64.6 20 0.00042 39.1 7.4 37 96-132 72-111 (276)
125 cd08911 START_STARD7-like Lipi 64.3 9.1 0.0002 40.1 4.6 57 422-497 19-77 (207)
126 cd08914 START_STARD15-like Lip 64.1 10 0.00023 40.9 5.0 55 421-497 53-109 (236)
127 PF02183 HALZ: Homeobox associ 64.0 18 0.0004 29.3 5.2 37 98-134 3-39 (45)
128 PF04218 CENP-B_N: CENP-B N-te 63.3 4.5 9.8E-05 33.5 1.7 46 24-78 1-46 (53)
129 cd08860 TcmN_ARO-CYC_like N-te 62.9 42 0.00092 33.2 8.8 107 223-351 5-113 (146)
130 PF13596 PAS_10: PAS domain; P 62.9 23 0.0005 32.2 6.5 98 741-846 7-104 (106)
131 TIGR03752 conj_TIGR03752 integ 61.2 27 0.00059 41.2 8.0 56 29-109 41-96 (472)
132 smart00338 BRLZ basic region l 61.0 54 0.0012 28.0 7.9 45 79-123 19-63 (65)
133 cd08903 START_STARD5-like Lipi 58.6 16 0.00034 38.4 5.1 56 422-497 20-79 (208)
134 KOG4196 bZIP transcription fac 58.4 47 0.001 32.9 7.7 24 108-131 82-105 (135)
135 cd08913 START_STARD14-like Lip 58.3 14 0.00031 39.9 4.8 55 421-497 56-112 (240)
136 smart00091 PAS PAS domain. PAS 57.9 33 0.00071 24.1 5.4 52 737-790 4-56 (67)
137 PRK11359 cyclic-di-GMP phospho 57.7 40 0.00086 41.5 9.2 99 739-841 18-120 (799)
138 KOG0709 CREB/ATF family transc 57.6 25 0.00055 41.2 6.9 93 29-137 220-316 (472)
139 cd07821 PYR_PYL_RCAR_like Pyra 57.2 1.5E+02 0.0031 27.4 11.0 35 224-258 6-40 (140)
140 KOG4343 bZIP transcription fac 57.2 16 0.00034 43.4 5.1 29 105-133 307-335 (655)
141 cd07813 COQ10p_like Coenzyme Q 56.5 57 0.0012 30.9 8.3 134 223-383 3-137 (138)
142 COG4026 Uncharacterized protei 56.2 48 0.001 35.6 8.0 47 87-133 143-189 (290)
143 PF00170 bZIP_1: bZIP transcri 56.2 63 0.0014 27.5 7.5 33 97-129 30-62 (64)
144 KOG3119 Basic region leucine z 55.8 35 0.00075 37.6 7.4 36 98-133 220-255 (269)
145 PRK15422 septal ring assembly 54.8 46 0.001 30.2 6.5 43 89-131 21-63 (79)
146 TIGR02966 phoR_proteo phosphat 52.7 37 0.00081 36.0 7.0 79 735-823 7-86 (333)
147 COG3074 Uncharacterized protei 52.2 49 0.0011 29.4 6.1 41 90-130 22-62 (79)
148 TIGR02894 DNA_bind_RsfA transc 51.9 44 0.00096 34.2 6.7 41 92-132 103-143 (161)
149 PF15290 Syntaphilin: Golgi-lo 51.9 2.1E+02 0.0046 31.9 12.2 56 79-134 74-137 (305)
150 PRK11006 phoR phosphate regulo 51.9 30 0.00065 39.5 6.4 49 734-784 98-147 (430)
151 PF06156 DUF972: Protein of un 51.5 51 0.0011 31.5 6.8 37 97-133 19-55 (107)
152 PRK13560 hypothetical protein; 50.8 1.1E+02 0.0023 37.5 11.2 107 736-846 334-461 (807)
153 PRK10884 SH3 domain-containing 50.0 66 0.0014 34.2 8.0 40 93-132 132-171 (206)
154 cd08902 START_STARD4-like Lipi 50.0 3.5E+02 0.0076 28.9 17.2 57 421-497 20-78 (202)
155 cd08872 START_STARD11-like Cer 48.6 48 0.001 35.7 6.9 64 416-497 18-84 (235)
156 cd08861 OtcD1_ARO-CYC_like N-t 48.4 54 0.0012 31.0 6.6 32 224-255 4-37 (142)
157 KOG4343 bZIP transcription fac 47.6 50 0.0011 39.5 7.2 30 95-124 311-340 (655)
158 PRK13169 DNA replication intia 47.5 66 0.0014 31.0 6.8 37 97-133 19-55 (110)
159 PF01166 TSC22: TSC-22/dip/bun 45.2 30 0.00064 29.7 3.6 31 100-130 14-44 (59)
160 PF04977 DivIC: Septum formati 44.7 46 0.001 28.8 5.1 28 106-133 23-50 (80)
161 PF07716 bZIP_2: Basic region 44.5 1.7E+02 0.0036 24.2 8.1 25 104-128 29-53 (54)
162 cd07819 SRPBCC_2 Ligand-bindin 43.5 2.3E+02 0.005 26.3 10.0 109 223-352 6-114 (140)
163 PRK00888 ftsB cell division pr 43.4 43 0.00093 31.8 4.9 29 105-133 32-60 (105)
164 PRK10820 DNA-binding transcrip 43.1 1.2E+02 0.0025 36.5 9.7 102 734-846 80-184 (520)
165 PLN00188 enhanced disease resi 42.9 1.1E+02 0.0024 38.1 9.5 96 477-606 236-341 (719)
166 PRK10724 hypothetical protein; 42.1 1.8E+02 0.0039 29.4 9.5 134 222-384 18-154 (158)
167 PF14197 Cep57_CLD_2: Centroso 41.8 1.2E+02 0.0025 26.9 7.0 18 114-131 47-64 (69)
168 PRK10884 SH3 domain-containing 41.8 86 0.0019 33.3 7.4 36 98-133 130-165 (206)
169 PF07407 Seadorna_VP6: Seadorn 41.1 40 0.00087 38.0 4.9 29 580-608 337-375 (420)
170 PRK13729 conjugal transfer pil 40.8 78 0.0017 37.6 7.5 46 87-132 77-122 (475)
171 PF14197 Cep57_CLD_2: Centroso 40.6 1.4E+02 0.0029 26.5 7.2 41 93-133 19-59 (69)
172 KOG4571 Activating transcripti 40.3 87 0.0019 35.0 7.3 43 79-121 241-283 (294)
173 PF07407 Seadorna_VP6: Seadorn 40.3 64 0.0014 36.4 6.3 30 87-116 33-62 (420)
174 PF08172 CASP_C: CASP C termin 39.0 85 0.0018 34.3 7.0 47 90-136 90-136 (248)
175 PF15058 Speriolin_N: Sperioli 38.0 60 0.0013 34.2 5.3 37 97-134 9-45 (200)
176 KOG1962 B-cell receptor-associ 38.0 91 0.002 33.5 6.8 16 94-109 152-167 (216)
177 PF12808 Mto2_bdg: Micro-tubul 37.9 64 0.0014 27.1 4.5 24 110-133 25-48 (52)
178 TIGR03752 conj_TIGR03752 integ 37.8 94 0.002 36.9 7.5 20 709-728 426-445 (472)
179 TIGR02894 DNA_bind_RsfA transc 37.5 1.3E+02 0.0027 31.0 7.4 48 86-133 104-151 (161)
180 TIGR02449 conserved hypothetic 37.2 1.5E+02 0.0032 26.1 6.8 38 94-131 15-52 (65)
181 TIGR02209 ftsL_broad cell divi 37.1 85 0.0018 27.8 5.6 30 104-133 28-57 (85)
182 cd08867 START_STARD4_5_6-like 36.7 76 0.0016 32.9 6.1 67 405-497 9-79 (206)
183 PF15035 Rootletin: Ciliary ro 36.4 1.1E+02 0.0025 31.8 7.2 45 87-131 75-119 (182)
184 PF06156 DUF972: Protein of un 35.8 87 0.0019 30.0 5.7 41 97-137 12-52 (107)
185 TIGR02449 conserved hypothetic 35.6 2E+02 0.0042 25.4 7.3 43 91-133 5-47 (65)
186 KOG2391 Vacuolar sorting prote 34.5 1.3E+02 0.0029 34.3 7.6 50 82-131 221-270 (365)
187 PF14662 CCDC155: Coiled-coil 34.4 1.2E+02 0.0027 31.9 6.9 43 91-133 79-121 (193)
188 PF10226 DUF2216: Uncharacteri 34.1 1.3E+02 0.0029 31.6 7.1 32 77-109 47-78 (195)
189 COG2202 AtoS FOG: PAS/PAC doma 34.0 3.4E+02 0.0074 24.1 9.4 77 741-819 120-198 (232)
190 PF05812 Herpes_BLRF2: Herpesv 33.6 52 0.0011 32.1 3.8 25 109-133 5-29 (118)
191 PRK15422 septal ring assembly 33.5 1.9E+02 0.004 26.5 7.0 49 85-133 24-72 (79)
192 PF12711 Kinesin-relat_1: Kine 31.7 1.1E+02 0.0025 28.2 5.5 43 93-136 24-66 (86)
193 KOG0288 WD40 repeat protein Ti 31.4 1.7E+02 0.0036 34.3 7.9 46 88-133 29-74 (459)
194 PHA03162 hypothetical protein; 31.3 55 0.0012 32.4 3.6 25 109-133 15-39 (135)
195 PHA03155 hypothetical protein; 31.2 56 0.0012 31.6 3.6 25 109-133 10-34 (115)
196 COG3074 Uncharacterized protei 30.8 2.1E+02 0.0045 25.6 6.6 46 87-132 26-71 (79)
197 COG1792 MreC Cell shape-determ 30.5 1E+02 0.0022 34.2 6.1 38 96-133 69-109 (284)
198 cd08865 SRPBCC_10 Ligand-bindi 30.3 4.3E+02 0.0093 24.1 10.5 37 224-260 4-40 (140)
199 PF10224 DUF2205: Predicted co 29.8 2.6E+02 0.0056 25.6 7.4 43 91-133 21-63 (80)
200 PRK13169 DNA replication intia 29.6 1.3E+02 0.0028 29.1 5.7 40 97-136 12-51 (110)
201 PF06210 DUF1003: Protein of u 29.1 1.7E+02 0.0036 28.1 6.4 29 93-121 73-101 (108)
202 cd07822 SRPBCC_4 Ligand-bindin 28.8 4.6E+02 0.01 24.0 10.3 32 223-254 4-35 (141)
203 PF10604 Polyketide_cyc2: Poly 28.8 4.6E+02 0.01 24.0 13.4 35 224-258 7-41 (139)
204 PTZ00454 26S protease regulato 27.6 1.7E+02 0.0036 34.1 7.4 39 96-134 25-63 (398)
205 PF04999 FtsL: Cell division p 27.0 1.4E+02 0.003 27.3 5.4 31 104-134 39-69 (97)
206 PF07558 Shugoshin_N: Shugoshi 27.0 57 0.0012 26.6 2.5 37 94-130 8-44 (46)
207 COG3879 Uncharacterized protei 26.4 1.7E+02 0.0037 32.0 6.6 63 75-137 39-105 (247)
208 cd08905 START_STARD1-like Chol 26.2 1.6E+02 0.0035 30.8 6.4 73 403-497 6-81 (209)
209 PF11365 DUF3166: Protein of u 25.8 4.8E+02 0.01 24.7 8.6 41 96-136 4-44 (96)
210 PF07888 CALCOCO1: Calcium bin 25.1 2.3E+02 0.0049 34.5 8.0 48 86-133 150-197 (546)
211 PF13815 Dzip-like_N: Iguana/D 25.1 2.2E+02 0.0048 27.3 6.6 38 93-130 80-117 (118)
212 PRK13922 rod shape-determining 24.9 1E+02 0.0023 33.5 4.9 39 100-138 69-110 (276)
213 COG1415 Uncharacterized conser 24.6 2.9E+02 0.0062 31.8 8.1 124 690-826 7-161 (373)
214 PF05529 Bap31: B-cell recepto 23.8 1.8E+02 0.004 29.9 6.2 34 100-133 154-187 (192)
215 PRK14872 rod shape-determining 23.3 1.7E+02 0.0037 33.4 6.2 38 89-130 60-97 (337)
216 PF06785 UPF0242: Uncharacteri 23.2 2.8E+02 0.0062 31.7 7.7 19 113-131 133-151 (401)
217 PF04967 HTH_10: HTH DNA bindi 23.1 83 0.0018 26.4 2.8 36 30-69 1-38 (53)
218 PF11932 DUF3450: Protein of u 22.5 3.1E+02 0.0067 29.6 7.9 44 90-133 53-96 (251)
219 KOG4403 Cell surface glycoprot 22.3 2.5E+02 0.0054 33.1 7.2 13 72-84 229-244 (575)
220 PF08172 CASP_C: CASP C termin 22.3 2.1E+02 0.0045 31.4 6.4 40 93-132 86-125 (248)
221 PRK11086 sensory histidine kin 22.3 4.1E+02 0.0089 30.8 9.4 95 737-846 224-322 (542)
222 cd04766 HTH_HspR Helix-Turn-He 22.1 1.2E+02 0.0026 27.4 4.0 74 53-132 4-90 (91)
223 PF10481 CENP-F_N: Cenp-F N-te 21.9 2.5E+02 0.0054 31.3 6.8 21 114-134 109-129 (307)
224 PF06637 PV-1: PV-1 protein (P 21.6 8.7E+02 0.019 28.5 11.1 27 105-131 354-380 (442)
225 PF05529 Bap31: B-cell recepto 21.6 2.9E+02 0.0063 28.5 7.2 36 95-130 156-191 (192)
226 PF00424 REV: REV protein (ant 21.6 1.2E+02 0.0025 28.5 3.7 36 35-88 14-49 (91)
227 KOG1962 B-cell receptor-associ 21.4 1.8E+02 0.0038 31.3 5.5 21 111-131 190-210 (216)
228 PF06785 UPF0242: Uncharacteri 21.3 2.7E+02 0.0059 31.8 7.1 63 73-135 53-120 (401)
229 KOG4797 Transcriptional regula 21.2 1.8E+02 0.0039 28.1 4.9 31 98-128 65-95 (123)
230 PF01486 K-box: K-box region; 20.7 2.9E+02 0.0063 25.5 6.3 31 101-131 69-99 (100)
231 PF07334 IFP_35_N: Interferon- 20.2 1.7E+02 0.0037 26.5 4.4 27 104-130 4-30 (76)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=1.4e-75 Score=606.02 Aligned_cols=211 Identities=36% Similarity=0.618 Sum_probs=194.7
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCcceEeCCCCCC---CCCccceeec------cCCCccceecceeEEeeChhhHHHHhc
Q 003071 169 PAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKP---GPDSIGIVAI------SHGCTGVAARACGLVGLDPTRVAEILK 239 (850)
Q Consensus 169 ~~~l~~lA~~am~El~~la~~~~plWi~~~g~~~---g~~~~~~~~~------~~~~~~EASR~~glV~m~~~~LVe~lm 239 (850)
++++++||++||+||++||++++|+|++++|+|+ ++|.++..++ ..||.+||||+||+|+||+.+|||+||
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~lm 80 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEILM 80 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCCccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHHh
Confidence 3589999999999999999999999999999877 7777754332 235999999999999999999999999
Q ss_pred CchhhhhhCCcc----eEEeeccCCC----cchHHHHHHHhhccccccCCceeeEEeeceeeCCCcEEEEEeecCCCCCC
Q 003071 240 DRPSWYRDCRSV----EVVNVLPTGS----SGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNG 311 (850)
Q Consensus 240 D~~~W~~~f~~~----~~l~~~~~g~----~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~ 311 (850)
|+++|.++||++ +|+.++++|+ ||+|||||+|||+||||||+|||||||||||++||+|||||||+|+.+.
T Consensus 81 D~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~- 159 (229)
T cd08875 81 DVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT- 159 (229)
T ss_pred ChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc-
Confidence 999999999876 9999999996 7899999999999999999999999999999999999999999998763
Q ss_pred CCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCCCccccchhhhchhHHHHHHHHHHHH-HHHh
Q 003071 312 PSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAAL-RHLR 382 (850)
Q Consensus 312 ~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar~w~~aL-r~~e 382 (850)
.++.++|+||||+|||||||||+|||||||||||+|||++.+|.+||++++||+||||+||+++| ||||
T Consensus 160 --~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 160 --APPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred --CCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 33455789999999999999999999999999999999999999999999999999999999999 7997
No 2
>PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=100.00 E-value=1.1e-58 Score=452.03 Aligned_cols=146 Identities=41% Similarity=0.625 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCC--CChhHHHHHhhcCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCcccc
Q 003071 705 PEAHTLARWICQSYRCYLGAELLKC--EGNESILKTLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEK 782 (850)
Q Consensus 705 pe~~~~~~~l~~Sy~~~~G~~L~~~--~~~~~~~~~l~~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~ 782 (850)
||++.|+++|++||+++||++|++. .+.++.+++||+||||||||++++||+|||||++||+||||+|+||++||||+
T Consensus 1 pe~~~~~~~l~~SY~~~~G~~L~~~~~~~~~~~~~~L~~ap~ailsh~~~~dP~f~yaN~aaL~l~e~~w~el~~lPsr~ 80 (148)
T PF08670_consen 1 PEALALAQLLLQSYRRWTGRDLLPSDDSSAEELAKALWHAPFAILSHGTKADPIFIYANQAALDLFETTWDELVGLPSRL 80 (148)
T ss_pred ChHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHcCCCEEEEcCCCCCCEEEehhHHHHHHhcCCHHHHhcCcHhh
Confidence 7999999999999999999999993 45568999999999999999999999999999999999999999999999999
Q ss_pred ccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcEEEeeeEEeEeecCCCceEEEEEeccccccC
Q 003071 783 IFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFINWSFV 850 (850)
Q Consensus 783 sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~W~~l 850 (850)
||||++|+||+++|++|++|||+++|+||||||+||||+|++|+||||+|++|+++||||||.||+||
T Consensus 81 sae~~~r~er~~lL~~v~~qG~~~~y~GiRiss~Grrf~ie~a~vW~l~D~~g~~~GqAa~F~~W~~l 148 (148)
T PF08670_consen 81 SAEEPERKERQSLLAQVMQQGYIDNYSGIRISSTGRRFRIERATVWNLIDEDGNYCGQAAMFSNWSFL 148 (148)
T ss_pred ccChhhHHHHHHHHHHHHHhCCccCCCeEEEcCCCCeEEEeceEEEEEEcCCCCEEEEEEEEeeeEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997
No 3
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.73 E-value=9.2e-18 Score=170.83 Aligned_cols=200 Identities=30% Similarity=0.408 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHHhcCCCcceEeCCCCCCCCCccceeeccCCCccceecceeEEeeChhhHHHHhcCch-hhhhhCCcce
Q 003071 174 SIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPTRVAEILKDRP-SWYRDCRSVE 252 (850)
Q Consensus 174 ~lA~~am~El~~la~~~~plWi~~~g~~~g~~~~~~~~~~~~~~~EASR~~glV~m~~~~LVe~lmD~~-~W~~~f~~~~ 252 (850)
++|++++.+++++++.++..|....+.+++...+.....+.++....-|..++|...+.++++.|+|.. +|-.++..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~Wd~~~~~~~ 80 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKDKKNGDVYYKKVSPSDSCPIKMFKAEGVVPASPEQVVEDLLDDREQWDKMCVEAE 80 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEEETTTCEEEEEEECSSSTSCEEEEEEEEESSCHHHHHHHHHCGGGHHSTTEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEccCCCeEEEEEeCccccccceEEEEEEEEcCChHHHHHHHHhhHhhcccchhhhe
Confidence 589999999999999999999986422332222333222223467889999999999999999999988 9999999999
Q ss_pred EEeeccCCCcchHHHHHHHhhccccccCCceeeEEeeceeeCCCcEEEEEeecCCCCCCCCCCCCCCccceeecCcceEE
Q 003071 253 VVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLI 332 (850)
Q Consensus 253 ~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclI 332 (850)
+|+.++.+ ..|..++.++..++|+.| |||.++|++++.++|.++|+..|++.....+. .+.++|+..++||++|
T Consensus 81 ~le~~~~~--~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~---~~~~VR~~~~~s~~~i 154 (206)
T PF01852_consen 81 VLEQIDED--TDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPN---SKGYVRAEILISGWVI 154 (206)
T ss_dssp EEEEEETT--EEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT----TTSEEEEEESEEEEE
T ss_pred eeeecCCC--CeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeecccccccc---ccCcceeeeeeEeEEE
Confidence 99998865 455566677788889999 99999999999999999999999986433221 4578999999999999
Q ss_pred eeCCCCceEEEEEEeeeccCCCccccchhhhchhHHHHHHHHHHHHH
Q 003071 333 RPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR 379 (850)
Q Consensus 333 q~~~nG~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar~w~~aLr 379 (850)
++.++|.|+||+|-|++..-+...-+++.++.+...-..+.+.++|+
T Consensus 155 ~~~~~~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~ 201 (206)
T PF01852_consen 155 RPLGDGRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALK 201 (206)
T ss_dssp EEETTCEEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEccCCCceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999988899999999998887787888776
No 4
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.69 E-value=3.7e-16 Score=159.46 Aligned_cols=199 Identities=31% Similarity=0.465 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHhcCCCcceEeCCCCCCCCCccceeeccCCCccceecceeEEeeChhh-HHHHhcCc---hhhhhhCCc
Q 003071 175 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPTR-VAEILKDR---PSWYRDCRS 250 (850)
Q Consensus 175 lA~~am~El~~la~~~~plWi~~~g~~~g~~~~~~~~~~~~~~~EASR~~glV~m~~~~-LVe~lmD~---~~W~~~f~~ 250 (850)
-|++++.|+++++...+..|....+++.+..++.... ..+..+.+-|..++|...+.+ +.++|+|. .+|-..|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~ 80 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSENENGDEVRSILS-PGRSPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAK 80 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEccccCCcceEEEEcc-CCCCceEEEEEEEEEecChHHHHHHHHhcccchhhCchhccc
Confidence 3788999999999999999999764445544443321 112456899999999999987 66788787 789999999
Q ss_pred ceEEeeccCCCcchHHHHHHHhhccccccCCceeeEEeeceeeCCCcEEEEEeecCCCCCCCCCCCCCCccceeecCcce
Q 003071 251 VEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGY 330 (850)
Q Consensus 251 ~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGc 330 (850)
+++|+.++.+. .++|.-+..|-++++.|||.++|++++.++|.|+|+..|++.. ..|+...++|+..++||+
T Consensus 81 ~~~ie~~~~~~----~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~----~~p~~~~~VR~~~~~~~~ 152 (206)
T smart00234 81 AETLEVIDNGT----VIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHP----TSPPTSGYVRAENLPSGL 152 (206)
T ss_pred EEEEEEECCCC----eEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCC----CCCCCCCceEEEEeceEE
Confidence 99999887542 2333222333213566999999999999999999999999853 234456889999999999
Q ss_pred EEeeCCCCceEEEEEEeeeccCCCccccchhhhchhHHHHHHHHHHHHH-HHh
Q 003071 331 LIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLR 382 (850)
Q Consensus 331 lIq~~~nG~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar~w~~aLr-~~e 382 (850)
+|+++++|.|+|||+.|++..-+..+.+.+.++.++.....+.+.++++ +|+
T Consensus 153 ~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T smart00234 153 LIEPLGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKHCA 205 (206)
T ss_pred EEEECCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999877889999999999889999999886 675
No 5
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.65 E-value=2e-16 Score=161.91 Aligned_cols=114 Identities=34% Similarity=0.477 Sum_probs=98.6
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHHHHHHHHHhHHHHHhh
Q 003071 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMN 102 (850)
Q Consensus 23 ~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~~~~l~~~n~~l~a~n 102 (850)
..+++.|+|.+|+..||+.|+...+..+.+|.+||++| ||.++||++||||||+|||.++.+ .+.+.|+.+.
T Consensus 50 ~~~kk~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~L----gL~pRQVavWFQNRRARwK~kqlE----~d~~~Lk~~~ 121 (198)
T KOG0483|consen 50 GKGKKRRLTSEQVKFLEKSFESEKKLEPERKKKLAKEL----GLQPRQVAVWFQNRRARWKTKQLE----KDYESLKRQL 121 (198)
T ss_pred cccccccccHHHHHHhHHhhccccccChHHHHHHHHhh----CCChhHHHHHHhhccccccchhhh----hhHHHHHHHH
Confidence 45677899999999999999999999999999999999 999999999999999999998766 5566799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh-cccccCCCCCc
Q 003071 103 KLLMEENDRLQKQVSQLVYENTFFRQQTQNA-ATLATTDTSCE 144 (850)
Q Consensus 103 ~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~-~~~~~~~~s~~ 144 (850)
+.++.++++++.++++|+.|...++.+.++. .....+++.|.
T Consensus 122 ~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (198)
T KOG0483|consen 122 ESLRSENDRLQSEVQELVAELSSLKREMQKSPENTLTMCPNSE 164 (198)
T ss_pred HHHhhhhhHHHHHHHHHHHHHhhhhhhhccCcccccccCcccc
Confidence 9999999999999999999988888887773 22223444444
No 6
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.51 E-value=1.2e-14 Score=156.79 Aligned_cols=68 Identities=29% Similarity=0.495 Sum_probs=61.5
Q ss_pred CCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHHHHHH
Q 003071 20 MIMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRL 91 (850)
Q Consensus 20 ~~~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~~~~l 91 (850)
..++||+|.-||..|+.+||+.|+.++|.+..+|++||..| +|++.||||||||||-|.||++....+
T Consensus 150 ~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~L----rLT~TQVKIWFQNrRYK~KR~~~dk~~ 217 (307)
T KOG0842|consen 150 KRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSL----RLTPTQVKIWFQNRRYKTKRQQKDKAL 217 (307)
T ss_pred cccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhc----CCCchheeeeeecchhhhhhhhhhhhh
Confidence 34667778899999999999999999999999999999999 999999999999999999997655433
No 7
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.50 E-value=1.3e-14 Score=156.57 Aligned_cols=68 Identities=32% Similarity=0.463 Sum_probs=62.2
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHHHHHHH
Q 003071 21 IMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQ 92 (850)
Q Consensus 21 ~~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~~~~l~ 92 (850)
+..||||.-||..|+.+||+.|-.|.|.+.++|.+|++.| +|++|||||||||||+|+||..++.+++
T Consensus 233 ~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~l----NLTeRQVKIWFQNRRMK~KK~~re~r~~ 300 (308)
T KOG0487|consen 233 RRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTL----NLTERQVKIWFQNRRMKEKKVNRENRLK 300 (308)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhc----ccchhheeeeehhhhhHHhhhhhhhhcc
Confidence 4668999999999999999999999999999999999999 9999999999999999999966554443
No 8
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.49 E-value=1.6e-14 Score=157.74 Aligned_cols=66 Identities=23% Similarity=0.322 Sum_probs=61.2
Q ss_pred CCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHHH
Q 003071 19 KMIMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 88 (850)
Q Consensus 19 ~~~~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~~ 88 (850)
..++.||.|+.||..|+.+||+.|++.+|.+..+|.+||+.| ||+..|||+||||||+|||+..++
T Consensus 168 ~pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~L----gLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 168 TPKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASL----GLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred CCcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHc----CCchhhHHHHHhhhhHHHHHHHHh
Confidence 345668889999999999999999999999999999999999 999999999999999999996554
No 9
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.46 E-value=3.8e-14 Score=140.88 Aligned_cols=64 Identities=30% Similarity=0.483 Sum_probs=59.7
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS 89 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~~~ 89 (850)
+.+|.|+.||++|+..||..|+.|+|....+|++||+.| +|++.||||||||||+|.||++.+.
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L----~LsetQVkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSL----SLSETQVKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHc----CCChhHhhhhhhhhhHHHHHHHHHh
Confidence 457889999999999999999999999999999999999 9999999999999999999966553
No 10
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.46 E-value=1.7e-14 Score=154.58 Aligned_cols=62 Identities=29% Similarity=0.466 Sum_probs=58.3
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~ 87 (850)
..||.|+.||..|+.+||+.|+.++|.+..+|.|||..| +|+++||||||||||+||||.+.
T Consensus 158 ~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L----~LtErQIKIWFQNRRMK~Kk~~k 219 (261)
T KOG0489|consen 158 KSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHAL----NLTERQIKIWFQNRRMKWKKENK 219 (261)
T ss_pred CCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhc----chhHHHHHHHHHHHHHHHHHhhc
Confidence 357889999999999999999999999999999999999 99999999999999999998543
No 11
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.41 E-value=1.5e-13 Score=141.34 Aligned_cols=66 Identities=27% Similarity=0.380 Sum_probs=60.8
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHH
Q 003071 18 QKMIMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (850)
Q Consensus 18 ~~~~~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~ 87 (850)
+++|+-||.|+.|+.-||+.|.+.|+++.|.-..+|.+||..| ||+..||||||||||.|.||...
T Consensus 117 gk~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsL----GLTQTQVKIWFQNrRSK~KKl~k 182 (245)
T KOG0850|consen 117 GKGKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASL----GLTQTQVKIWFQNRRSKFKKLKK 182 (245)
T ss_pred CCcccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHh----CCchhHhhhhhhhhHHHHHHHHh
Confidence 3555668889999999999999999999999999999999999 99999999999999999998443
No 12
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.40 E-value=2.2e-13 Score=137.77 Aligned_cols=66 Identities=30% Similarity=0.460 Sum_probs=61.2
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHH
Q 003071 18 QKMIMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (850)
Q Consensus 18 ~~~~~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~ 87 (850)
.|++..|+.|+-||.+|+..||+.|++.+|.+..+|.+++..| .|++.||||||||||+|.||-|+
T Consensus 139 rKhk~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL----~LTeTqVKIWFQNRRAKaKRlQe 204 (246)
T KOG0492|consen 139 RKHKPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSL----ELTETQVKIWFQNRRAKAKRLQE 204 (246)
T ss_pred cccCCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhh----hhhhhheehhhhhhhHHHHHHHH
Confidence 3566778999999999999999999999999999999999999 99999999999999999998443
No 13
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.36 E-value=4.6e-13 Score=139.04 Aligned_cols=66 Identities=27% Similarity=0.477 Sum_probs=58.5
Q ss_pred CCCCCCCC-cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHHH
Q 003071 19 KMIMDNGK-YVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 88 (850)
Q Consensus 19 ~~~~~rr~-R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~~ 88 (850)
+++++||. |+.||..|+++||+.|++.+||+...|+-||-++ .|.+..|+|||||||+||||+.+.
T Consensus 136 kkk~kRRh~RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~kt----elpEDRIqVWfQNRRAKWRk~Ek~ 202 (332)
T KOG0494|consen 136 KKKKKRRHFRTIFTSYQLEELEKAFKEAHYPDVYAREMLADKT----ELPEDRIQVWFQNRRAKWRKTEKR 202 (332)
T ss_pred ccccccccccchhhHHHHHHHHHHHhhccCccHHHHHHHhhhc----cCchhhhhHHhhhhhHHhhhhhhh
Confidence 33334444 8899999999999999999999999999999999 999999999999999999986543
No 14
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.35 E-value=2.2e-13 Score=142.19 Aligned_cols=59 Identities=31% Similarity=0.527 Sum_probs=54.8
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHH
Q 003071 25 GKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (850)
Q Consensus 25 r~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~ 87 (850)
|=|..||..|+.+||+.|...+|.+..+|.|||..| +|++|||||||||||+|+||.++
T Consensus 201 KYRvVYTDhQRLELEKEfh~SryITirRKSELA~~L----gLsERQVKIWFQNRRAKERK~nK 259 (317)
T KOG0848|consen 201 KYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATL----GLSERQVKIWFQNRRAKERKDNK 259 (317)
T ss_pred ceeEEecchhhhhhhhhhccccceeeehhHHHHHhh----CccHhhhhHhhhhhhHHHHHHHH
Confidence 346789999999999999999999999999999999 99999999999999999998443
No 15
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.35 E-value=4.4e-13 Score=136.31 Aligned_cols=61 Identities=28% Similarity=0.357 Sum_probs=57.7
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
++||.|+.|+..|+-.||..|+..+|.+..+|.-||++| .|++.||||||||||.|||++-
T Consensus 103 RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sL----qLTETQVKIWFQNRRnKwKRq~ 163 (268)
T KOG0485|consen 103 RKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASL----QLTETQVKIWFQNRRNKWKRQY 163 (268)
T ss_pred ccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhh----hhhhhhhhhhhhhhhHHHHHHH
Confidence 557778999999999999999999999999999999999 9999999999999999999943
No 16
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.33 E-value=3.6e-13 Score=122.99 Aligned_cols=61 Identities=25% Similarity=0.533 Sum_probs=57.6
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
+.+|-|+.||..|+.+||+.|.+.+||+...|++||.++ .|++..|+|||||||+|.|++.
T Consensus 16 KQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~ki----dLTEARVQVWFQNRRAKfRKQE 76 (125)
T KOG0484|consen 16 KQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKI----DLTEARVQVWFQNRRAKFRKQE 76 (125)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhh----hhhHHHHHHHHHhhHHHHHHHH
Confidence 457889999999999999999999999999999999999 9999999999999999999843
No 17
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.33 E-value=4.5e-13 Score=110.71 Aligned_cols=57 Identities=42% Similarity=0.739 Sum_probs=55.0
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHH
Q 003071 24 NGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (850)
Q Consensus 24 rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 84 (850)
+++|++||.+|+..||..|..++||+..++..||.++ ||++.||++||||||.++|+
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l----~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKEL----GLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHH----TSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccc----cccccccccCHHHhHHHhCc
Confidence 4788999999999999999999999999999999999 99999999999999999986
No 18
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.27 E-value=2.3e-12 Score=133.96 Aligned_cols=58 Identities=33% Similarity=0.572 Sum_probs=56.0
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHH
Q 003071 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (850)
Q Consensus 23 ~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 84 (850)
.||.|+-||.+|++.|...|+++.|.++.+|++||.+| +|.+.||||||||+|+|.||
T Consensus 246 eKRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~EL----gLNEsQIKIWFQNKRAKiKK 303 (342)
T KOG0493|consen 246 EKRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQEL----GLNESQIKIWFQNKRAKIKK 303 (342)
T ss_pred hcCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHh----CcCHHHhhHHhhhhhhhhhh
Confidence 46789999999999999999999999999999999999 99999999999999999998
No 19
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.23 E-value=5.7e-12 Score=129.30 Aligned_cols=65 Identities=25% Similarity=0.503 Sum_probs=60.3
Q ss_pred CCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHH
Q 003071 19 KMIMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (850)
Q Consensus 19 ~~~~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~ 87 (850)
..++.+|.|++||..|+++||.+|.+..||+...|++||.+| +|.+.+|+|||.|||+|+|+++.
T Consensus 33 ~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlkl----nLpeSrVqVWFKNRRAK~r~qq~ 97 (228)
T KOG2251|consen 33 GPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKL----NLPESRVQVWFKNRRAKCRRQQQ 97 (228)
T ss_pred cchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHh----CCchhhhhhhhccccchhhHhhh
Confidence 344668999999999999999999999999999999999999 99999999999999999998544
No 20
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.21 E-value=1.3e-10 Score=115.71 Aligned_cols=185 Identities=25% Similarity=0.416 Sum_probs=138.5
Q ss_pred HHHHHHHHHhcCCCcceEeCCCCCCCCCccceeeccCCCccceecceeEEeeChhhHHHHhcC---chhhhhhCCcceEE
Q 003071 178 ETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPTRVAEILKD---RPSWYRDCRSVEVV 254 (850)
Q Consensus 178 ~am~El~~la~~~~plWi~~~g~~~g~~~~~~~~~~~~~~~EASR~~glV~m~~~~LVe~lmD---~~~W~~~f~~~~~l 254 (850)
++..+++.+.+.+ ..|-..... .|-..+... ..+.....-|..+.|..++.++.++|+| +.+|-..|...+++
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~-~~v~vy~~~--~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl 77 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEK-DGVKIYTKP--YEDSGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVI 77 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEEC-CcEEEEEec--CCCCCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEE
Confidence 4667788887766 679875321 121111110 1122346789999999999999999999 77788888888888
Q ss_pred eeccCCCcchHHHHHHHhhccccccCCceeeEEeeceeeCCCcEEEEEeecCCCCCCCCCCCCCCccceeecCcceEEee
Q 003071 255 NVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRP 334 (850)
Q Consensus 255 ~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~ 334 (850)
..+..+ ..++|..+..|.| ++.|||.++|++.+.++|.++|+-.|+|.. ..|....++|++.+++|++|++
T Consensus 78 ~~~~~~----~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~----~~p~~~~~vR~~~~~~~~~i~~ 148 (193)
T cd00177 78 EEIDEH----TDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHD----SHPKEKGYVRAEIKLSGWIIEP 148 (193)
T ss_pred EEeCCC----eEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCC----CCCCCCCcEEEEEEccEEEEEE
Confidence 887643 5678888889999 999999999999999999999999999864 2233347899999999999999
Q ss_pred CCCCceEEEEEEeeeccCCCccccchhhhchhHHHHHHHHHHHHH
Q 003071 335 CEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR 379 (850)
Q Consensus 335 ~~nG~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar~w~~aLr 379 (850)
+++|.|+||++-|++..-+ +| ..++++.+.-+...++..++
T Consensus 149 ~~~~~~~vt~~~~~D~~g~-iP---~~~~~~~~~~~~~~~~~~~~ 189 (193)
T cd00177 149 LDPGKTKVTYVLQVDPKGS-IP---KSLVNSAAKKQLASFLKDLR 189 (193)
T ss_pred CCCCCEEEEEEEeeCCCCC-cc---HHHHHhhhhhccHHHHHHHH
Confidence 9999999999999998865 33 24555555544444444444
No 21
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.14 E-value=2e-11 Score=129.44 Aligned_cols=59 Identities=34% Similarity=0.506 Sum_probs=55.8
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 24 NGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 24 rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
||=|+-||.+||-.||+.|-+..|.+.++|.+||..| ||.+..|||||||||+|+||+.
T Consensus 182 RRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaL----NLPEtTIKVWFQNRRMKDKRQR 240 (408)
T KOG0844|consen 182 RRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAAL----NLPETTIKVWFQNRRMKDKRQR 240 (408)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhh----CCCcceeehhhhhchhhhhhhh
Confidence 5668899999999999999999999999999999999 9999999999999999999843
No 22
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.12 E-value=2e-11 Score=100.10 Aligned_cols=55 Identities=42% Similarity=0.736 Sum_probs=51.7
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHH
Q 003071 25 GKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 83 (850)
Q Consensus 25 r~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~K 83 (850)
+.|.+++++|+..||..|..++||+...+.+||.++ ||+.+||+.||+|||.+.|
T Consensus 2 k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~----~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 2 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKL----GLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH----CcCHHHHHHhHHHHhhccC
Confidence 456789999999999999999999999999999999 9999999999999998754
No 23
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=99.11 E-value=5.5e-11 Score=127.02 Aligned_cols=63 Identities=22% Similarity=0.489 Sum_probs=59.8
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 88 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~~ 88 (850)
++||.|+.||..|+++||..|+++.||+...|++||.-. +|++..|++||.|||+||||++.+
T Consensus 111 KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwt----NlTE~rvrvwfknrrakwrkrErN 173 (351)
T KOG0486|consen 111 KQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKRERN 173 (351)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhc----cccchhhhhhcccchhhhhhhhhh
Confidence 667889999999999999999999999999999999999 999999999999999999997665
No 24
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.11 E-value=3.2e-11 Score=99.47 Aligned_cols=56 Identities=43% Similarity=0.795 Sum_probs=53.5
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHH
Q 003071 25 GKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (850)
Q Consensus 25 r~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 84 (850)
+++..++.+|+..||..|..++||+..++.+||.++ ||+++||+.||+|||.+.|+
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~----~l~~~qV~~WF~nrR~~~~~ 57 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKEL----GLTERQVKIWFQNRRAKLKR 57 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHhc
Confidence 567799999999999999999999999999999999 99999999999999999876
No 25
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.09 E-value=1.2e-10 Score=97.65 Aligned_cols=52 Identities=19% Similarity=0.353 Sum_probs=50.2
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCC----CCHHHHHHHHHhcCccCCCCcceEEeecccch
Q 003071 24 NGKYVRYTPEQVEALERLYHECPK----PSSMRRQQLIRECPILSNIEPKQIKVWFQNRR 79 (850)
Q Consensus 24 rr~R~r~T~~Ql~~LE~~F~~~~~----Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRR 79 (850)
+|.|+.||++|++.||..|..++| |+...|.+||.++ ||++++||+||||-+
T Consensus 2 kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~l----gl~~~vvKVWfqN~k 57 (58)
T TIGR01565 2 KRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEI----GVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHh----CCCHHHeeeecccCC
Confidence 688999999999999999999999 9999999999999 999999999999965
No 26
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.09 E-value=8.4e-11 Score=117.04 Aligned_cols=62 Identities=39% Similarity=0.620 Sum_probs=58.1
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~ 87 (850)
..+++|.|.|.+|+..|++.|..+|||+...|..|+..| ||+++-|++||||||++.|++..
T Consensus 50 ~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~l----nm~~ksVqIWFQNkR~~~k~~~~ 111 (156)
T COG5576 50 PPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLL----NMPPKSVQIWFQNKRAKEKKKRS 111 (156)
T ss_pred cCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhc----CCChhhhhhhhchHHHHHHHhcc
Confidence 457889999999999999999999999999999999999 99999999999999999998543
No 27
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.08 E-value=1.3e-11 Score=121.21 Aligned_cols=63 Identities=25% Similarity=0.436 Sum_probs=58.9
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 88 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~~ 88 (850)
+.+|.|+.|+..|+..||+.|+..+|.+..+|.+||..| +|+++|||.||||||+|.||.+++
T Consensus 99 ~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L----~LS~~QVKTWFQNrRMK~Kk~~r~ 161 (194)
T KOG0491|consen 99 RRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANAL----SLSETQVKTWFQNRRMKHKKQQRN 161 (194)
T ss_pred HhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHHHHhc
Confidence 446779999999999999999999999999999999999 999999999999999999986655
No 28
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.05 E-value=1.2e-10 Score=128.47 Aligned_cols=59 Identities=29% Similarity=0.476 Sum_probs=57.3
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 84 (850)
++||||+.++...+..||++|.+|++|+..++-+||.+| +|++..|+|||+|||.|+||
T Consensus 293 RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L----~leKEVVRVWFCNRRQkeKR 351 (398)
T KOG3802|consen 293 RKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESL----QLEKEVVRVWFCNRRQKEKR 351 (398)
T ss_pred cccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHh----ccccceEEEEeecccccccc
Confidence 668899999999999999999999999999999999999 99999999999999999998
No 29
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=99.01 E-value=5.4e-09 Score=108.18 Aligned_cols=194 Identities=22% Similarity=0.326 Sum_probs=139.9
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceEeCCCCCCCCCccceeec-cCCCccceecceeEEeeChhhHHHHh-cC---chhhhh
Q 003071 172 LLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAI-SHGCTGVAARACGLVGLDPTRVAEIL-KD---RPSWYR 246 (850)
Q Consensus 172 l~~lA~~am~El~~la~~~~plWi~~~g~~~g~~~~~~~~~-~~~~~~EASR~~glV~m~~~~LVe~l-mD---~~~W~~ 246 (850)
...++++|++|++.+.. ++-|-.....+.| +.++-. ..+ .+-.-|..++|...+.++++.| +| +.+|-.
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~~~~---i~i~~r~~~~-~~~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~ 79 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNTTWG---DVVYSRNVPG-VGKVFRLTGVLDCPAEFLYNELVLNVESLPSWNP 79 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEecCCC---CEEEEEEcCC-CceEEEEEEEEcCCHHHHHHHHHcCccccceecC
Confidence 56799999999999954 5589875321112 212111 112 2356899999999999987654 44 578999
Q ss_pred hCCcceEEeeccCCCcchHHHHHHHhhcc-ccccCCceeeEEeeceeeCCCcEEEEEeecCCCCCCCCCCCCCCccceee
Q 003071 247 DCRSVEVVNVLPTGSSGTIELLYMQLYAP-TTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEM 325 (850)
Q Consensus 247 ~f~~~~~l~~~~~g~~GalqLm~aE~~v~-SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rr 325 (850)
.|-..++|+.+... ..++|.-+.-+ .++|..|||.++|+.++.+ |.++|+..|++. +..|+...++|+..
T Consensus 80 ~~~~~~~i~~~d~~----~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h----~~~P~~~g~VR~~~ 150 (208)
T cd08868 80 TVLECKIIQVIDDN----TDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEH----PAMPPTKNYVRGEN 150 (208)
T ss_pred cccceEEEEEecCC----cEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccC----CCCCCCCCeEEEec
Confidence 99988898887532 22334222222 2589999999999999866 779999999863 23455668999999
Q ss_pred cCcceEEeeCCC--CceEEEEEEeeeccCCCccccchhhhchhHHHHHHHHHHHHH-HHhhh
Q 003071 326 LPSGYLIRPCEG--GGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLRQI 384 (850)
Q Consensus 326 lPSGclIq~~~n--G~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar~w~~aLr-~~e~l 384 (850)
+++|++|+++++ +.|+|||+-|++..-+ +|. -++++.+.-+.-.++..|| +|+.|
T Consensus 151 ~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 151 GPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQ---YLVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred cccEEEEEECCCCCCceEEEEEEEECCCCC-Ccc---eeeehhhHHHHHHHHHHHHHHHhhC
Confidence 999999999987 6899999999997744 554 3466777777778888886 77653
No 30
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=98.99 E-value=7.4e-09 Score=108.19 Aligned_cols=192 Identities=20% Similarity=0.291 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHhcCCCcceEeCCCCCCCCCccceeec-cCCCccceecceeEE-eeChhhHHHHhcC---chhhhhhCCc
Q 003071 176 AEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAI-SHGCTGVAARACGLV-GLDPTRVAEILKD---RPSWYRDCRS 250 (850)
Q Consensus 176 A~~am~El~~la~~~~plWi~~~g~~~g~~~~~~~~~-~~~~~~EASR~~glV-~m~~~~LVe~lmD---~~~W~~~f~~ 250 (850)
-++.+++|+.++..++ -|-.... +.| +.++-. ..+...-.-|..+.+ ...+..+.+.|+| +.+|-..|..
T Consensus 8 ~~~~~~~~~~~~~~~~-~W~~~~~-~~g---i~iy~r~~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e 82 (222)
T cd08871 8 TDADFEEFKKLCDSTD-GWKLKYN-KNN---VKVWTKNPENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIE 82 (222)
T ss_pred CHHHHHHHHHHhcCCC-CcEEEEc-CCC---eEEEEeeCCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhce
Confidence 3689999999997544 7987532 222 222211 122333466777765 5788999999999 5889888888
Q ss_pred ceEEeeccCCCcchHHHHHHHhhccccccCCceeeEEeeceeeCCCcEEEEEeecCCCCCCCCCCCCCCccceeecCcce
Q 003071 251 VEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGY 330 (850)
Q Consensus 251 ~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGc 330 (850)
.++|..+..+ ..++|..+..|-| |..|||.++|..+..+ |..+|+..|++.. ..|....++|.....+|+
T Consensus 83 ~~~ie~~d~~----~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~~----~~P~~~g~VR~~~~~~g~ 152 (222)
T cd08871 83 SFDICQLNPN----NDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKHK----KYPPRKGFVRAISLLTGY 152 (222)
T ss_pred eEEEEEcCCC----CEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccCC----CCCCCCCeEEeEEEccEE
Confidence 8888877533 3567777888888 8999999999998776 8889999999742 344556889999999999
Q ss_pred EEeeCCCCceEEEEEEeeeccCCCccccchhhhchhHHHHHHHHHHHHH-HHhhhcc
Q 003071 331 LIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLRQISQ 386 (850)
Q Consensus 331 lIq~~~nG~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar~w~~aLr-~~e~la~ 386 (850)
+|++.+++.|+|||+-|++..-+ +|. -+++..+.-+.-.++..|| .|+....
T Consensus 153 ~i~p~~~~~t~vt~~~~~Dp~G~-IP~---~lvN~~~~~~~~~~l~~l~k~~~~y~~ 205 (222)
T cd08871 153 LIRPTGPKGCTLTYVTQNDPKGS-LPK---WVVNKATTKLAPKVMKKLHKAALKYPE 205 (222)
T ss_pred EEEECCCCCEEEEEEEecCCCCC-cCH---HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999998765 554 4566656666778888886 6766553
No 31
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=98.96 E-value=1.3e-08 Score=105.25 Aligned_cols=189 Identities=25% Similarity=0.323 Sum_probs=138.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceEeCCCCCCCCCccceeec-cCCCccceecceeEEeeChhhHHHHhcC-----chhhh
Q 003071 172 LLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAI-SHGCTGVAARACGLVGLDPTRVAEILKD-----RPSWY 245 (850)
Q Consensus 172 l~~lA~~am~El~~la~~~~plWi~~~g~~~g~~~~~~~~~-~~~~~~EASR~~glV~m~~~~LVe~lmD-----~~~W~ 245 (850)
+-.++++|.+|++.... .+.-|-.... +.| +.+... ..++.+-.-|..|.+..++.++++.|+| +.+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~-~~~~W~~~~~-~~~---i~v~~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd 77 (206)
T cd08867 3 FKVIAEKLANEALQYIN-DTDGWKVLKT-VKN---ITVSWKPSTEFTGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWD 77 (206)
T ss_pred HHHHHHHHHHHHHHHhc-CcCCcEEEEc-CCC---cEEEEecCCCCCCEEEEEEEEEcCCHHHHHHHHHhcCcccccccc
Confidence 35789999999999987 4467987532 122 222211 1122223468999999999999999998 57899
Q ss_pred hhCCcceEEeeccCCCcchHHHHHHHhhcc---ccccCCceeeEEeeceeeCCCcEEEEEeecCCCCCCCCCCCCCCccc
Q 003071 246 RDCRSVEVVNVLPTGSSGTIELLYMQLYAP---TTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVR 322 (850)
Q Consensus 246 ~~f~~~~~l~~~~~g~~GalqLm~aE~~v~---SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r 322 (850)
..|-..++|+.+.... .++|. ..+ .++|..|||..+||.++.++|.++|+-.|++.- ..|+.+.++|
T Consensus 78 ~~~~~~~~le~id~~~----~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp----~~p~~~~~VR 147 (206)
T cd08867 78 KSLKHYEVLEKISEDL----CVGRT--ITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIP----ERPPTPGFVR 147 (206)
T ss_pred ccccceEEEEEeCCCe----EEEEE--EccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCC----CCCCCCCcEE
Confidence 9998888888875321 23332 233 357999999999999999999999999998743 3456678999
Q ss_pred eeecCcceEEeeCC--CCceEEEEEEeeeccCCCccccchhhhchhHHHHHHHHHHHHH
Q 003071 323 AEMLPSGYLIRPCE--GGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR 379 (850)
Q Consensus 323 ~rrlPSGclIq~~~--nG~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar~w~~aLr 379 (850)
+...++|++|++.+ ++.|+|||+-|++..- .+| +-++++.++=+.--|+..||
T Consensus 148 ~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG-~iP---~~lvn~~~~~~~~~~~~~lr 202 (206)
T cd08867 148 GYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRG-MIP---QSLVESAMPSNLVNFYTDLV 202 (206)
T ss_pred EEeecCEEEEEECCCCCCceEEEEEEEeccCC-CCc---HHHHHhhhhhhHHHHHHHHH
Confidence 99999999999886 5789999999999863 455 35666666555556666665
No 32
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=98.94 E-value=2.3e-10 Score=116.78 Aligned_cols=61 Identities=33% Similarity=0.519 Sum_probs=56.3
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHHH
Q 003071 24 NGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 88 (850)
Q Consensus 24 rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~~ 88 (850)
+..|..|+..|+..||+.|...+|+-...|.+||..+ |+.+.||||||||||+|||||...
T Consensus 168 k~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~l----gmteSqvkVWFQNRRTKWRKkhAa 228 (288)
T KOG0847|consen 168 KQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQEL----NMTESQVKVWFQNRRTKWRKKHAA 228 (288)
T ss_pred cccCCCccchhhhhhhhhhhhhhcccchhHHHhhccc----cccHHHHHHHHhcchhhhhhhhcc
Confidence 3456789999999999999999999999999999999 999999999999999999997643
No 33
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.93 E-value=1.5e-08 Score=105.24 Aligned_cols=170 Identities=18% Similarity=0.264 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEeCCCCCCCCCccceeec-cCCCccceecceeEEeeChhhHHHHhcCch---hhhhhC
Q 003071 173 LSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAI-SHGCTGVAARACGLVGLDPTRVAEILKDRP---SWYRDC 248 (850)
Q Consensus 173 ~~lA~~am~El~~la~~~~plWi~~~g~~~g~~~~~~~~~-~~~~~~EASR~~glV~m~~~~LVe~lmD~~---~W~~~f 248 (850)
..|+++|++|++++-. ..-.|-.. +.+.+ +.++.. .+.+.+---|..|+|..++.+|+|.+-|.+ +|-..|
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~gWk~~---k~~~~-~~v~~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~ 78 (204)
T cd08904 4 KKIAQETSQEVLGYSR-DTSGWKVV---KTSKK-ITVSWKPSRKYHGNLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSL 78 (204)
T ss_pred HHHHHHHHHHHHhhhh-cccCCeEE---ecCCc-eEEEEEEcCCCCceEEEEEEEecCCHHHHHHHHhccchhhhhcccc
Confidence 5799999999999987 45788764 22322 222221 234445677999999999999999998866 455555
Q ss_pred CcceEEeeccCCCcchHHHHHHHhh-ccccccCCceeeEEeeceeeCCCcEEEEEeecCCCCCCCCCCCCCCccceeecC
Q 003071 249 RSVEVVNVLPTGSSGTIELLYMQLY-APTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLP 327 (850)
Q Consensus 249 ~~~~~l~~~~~g~~GalqLm~aE~~-v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlP 327 (850)
-..++|+.+.... .+.|.-++ .+-++|-+|||..+||.++.++|.++|+..|++. +..|+...|+|++..|
T Consensus 79 ~~~~iie~Id~~T----~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~H----p~~Pp~~g~VRa~n~~ 150 (204)
T cd08904 79 QVYKMLQRIDSDT----FICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEY----PQCPPSSNYIRGYNHP 150 (204)
T ss_pred cceeeEEEeCCCc----EEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEeccc----CCCCCCCCcEEEeeec
Confidence 5557776655331 23332222 3457899999999999999999999999999864 4456677899999999
Q ss_pred cceEEeeCCCC--ceEEEEEEeeeccCCCcc
Q 003071 328 SGYLIRPCEGG--GSIIHIVDHMDLEPWSVP 356 (850)
Q Consensus 328 SGclIq~~~nG--~skVtwVeH~e~d~~~vh 356 (850)
+||+|++.+++ +|++||+-++|+.- .+|
T Consensus 151 ~G~~i~pl~~~p~~t~l~~~~~~DlkG-~lP 180 (204)
T cd08904 151 CGYVCSPLPENPAYSKLVMFVQPELRG-NLS 180 (204)
T ss_pred cEEEEEECCCCCCceEEEEEEEeCCCC-CCC
Confidence 99999999874 89999999987763 344
No 34
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=98.90 E-value=9.1e-10 Score=116.26 Aligned_cols=60 Identities=37% Similarity=0.658 Sum_probs=57.1
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 23 ~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
.+|.|+.+|+.|++.|...|+..|+|-...|++|+.+. ||..+.|+|||||||+|+||-+
T Consensus 167 nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseT----GLDMRVVQVWFQNRRAKEKRLK 226 (383)
T KOG4577|consen 167 NKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSET----GLDMRVVQVWFQNRRAKEKRLK 226 (383)
T ss_pred cCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhcc----CcceeehhhhhhhhhHHHHhhh
Confidence 46889999999999999999999999999999999999 9999999999999999999833
No 35
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.81 E-value=1.1e-07 Score=98.91 Aligned_cols=189 Identities=19% Similarity=0.253 Sum_probs=135.1
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceEeCCCCCCCCCccceeec-cCCCccceecceeEEeeChhhHHHHhcCc-----hhhh
Q 003071 172 LLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAI-SHGCTGVAARACGLVGLDPTRVAEILKDR-----PSWY 245 (850)
Q Consensus 172 l~~lA~~am~El~~la~~~~plWi~~~g~~~g~~~~~~~~~-~~~~~~EASR~~glV~m~~~~LVe~lmD~-----~~W~ 245 (850)
..+++++|+++++.+-+ .+..|-..... .| +.++.. .+...+-.-|.-|+|..++.+|++.|+|. .+|-
T Consensus 3 ~~~~~~~~~~~~l~~~~-~~~~W~~~~~~-~~---i~v~~~~~~~~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~ 77 (208)
T cd08903 3 YAELAESVADKMLLYRR-DESGWKTCRRT-NE---VAVSWRPSAEFAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWD 77 (208)
T ss_pred HHHHHHHHHHHHHhhhc-cccCCEEEEcC-CC---EEEEeeecCCCCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhh
Confidence 36789999999999875 66789874221 11 222211 11122223689999999999999999965 6999
Q ss_pred hhCCcceEEeeccCCCcchHHHHHHHhhcccc---ccCCceeeEEeeceeeCCCcEEEEEeecCCCCCCCCCCCCCCccc
Q 003071 246 RDCRSVEVVNVLPTGSSGTIELLYMQLYAPTT---LAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVR 322 (850)
Q Consensus 246 ~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SP---LVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r 322 (850)
..|-..++|+.+.... .+.|. ..|.| +|.+|||..+|+.++.++|..+|.-.|+.. +..|+.+.|+|
T Consensus 78 ~~~~~~~vle~id~~~----~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h----~~~P~~~~~VR 147 (208)
T cd08903 78 QNVKDFEVVEAISDDV----SVCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEH----PLCPPQAGFVR 147 (208)
T ss_pred hccccEEEEEEecCCE----EEEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccC----CCCCCCCCeEE
Confidence 9999999999887331 12222 34555 699999999999999999998877777653 34566678999
Q ss_pred eeecCcceEEeeCC--CCceEEEEEEeeeccCCCccccchhhhchhHHHHHHHHHHHHH
Q 003071 323 AEMLPSGYLIRPCE--GGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR 379 (850)
Q Consensus 323 ~rrlPSGclIq~~~--nG~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar~w~~aLr 379 (850)
+++.|+|++|.+.+ ++.|+|||+-|+|.. ..+|. .++++.++=+..-++..||
T Consensus 148 ~~~~~~g~~~~~~~~~~~~t~v~~~~~~Dpk-G~iP~---~lvn~~~~~~~~~~~~~Lr 202 (208)
T cd08903 148 GFNHPCGCFCEPVPGEPDKTQLVSFFQTDLS-GYLPQ---TVVDSFFPASMAEFYNNLT 202 (208)
T ss_pred EeeeccEEEEEECCCCCCceEEEEEEEeccC-CCcCH---HHHHHHhhHHHHHHHHHHH
Confidence 99999999999996 458999999888764 35663 5665544334445555554
No 36
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.77 E-value=7e-08 Score=100.48 Aligned_cols=190 Identities=19% Similarity=0.241 Sum_probs=135.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceEeCCCCCCCCCccceeeccCCCccceecceeEEeeChhhHHHHhc-C---chhhhhh
Q 003071 172 LLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPTRVAEILK-D---RPSWYRD 247 (850)
Q Consensus 172 l~~lA~~am~El~~la~~~~plWi~~~g~~~g~~~~~~~~~~~~~~~EASR~~glV~m~~~~LVe~lm-D---~~~W~~~ 247 (850)
...++++|++|++++.+ .+..|-.....+.| +.++.......+-+-|.-++|..++.+|++.|. | ..+|...
T Consensus 6 y~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~g---i~v~s~~~~~~~k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~ 81 (209)
T cd08905 6 YIKQGEEALQKSLSILQ-DQEGWKTEIVAENG---DKVLSKVVPDIGKVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPN 81 (209)
T ss_pred HHHHHHHHHHHHHHHhc-cccCCEEEEecCCC---CEEEEEEcCCCCcEEEEEEEecCCHHHHHHHHHhchhhhceeccc
Confidence 46799999999999986 55689874111222 222221111123677889999999999995555 4 3788888
Q ss_pred CCcceEEeeccCCCcchHHHHHHHhhcccc--ccCCceeeEEeeceeeCCCcEEEEEeecCCCCCCCCCCCCCCccceee
Q 003071 248 CRSVEVVNVLPTGSSGTIELLYMQLYAPTT--LAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEM 325 (850)
Q Consensus 248 f~~~~~l~~~~~g~~GalqLm~aE~~v~SP--LVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rr 325 (850)
|-.+++|+.+... --++|. ..+|.| +|..|||-.+|+.++.+++. +++..|.+. +..|+...++|.+.
T Consensus 82 ~~~~~vl~~id~~----~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s~~~----~~~P~~~~~VR~~~ 151 (209)
T cd08905 82 VKEVKILQRIGKD----TLITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMATHF----GLMPEQKGFIRAEN 151 (209)
T ss_pred chHHHHHhhcCCC----ceEEEE-EeccCCCCccCccceEEEEEEEEcCCcE-EEEEEeecC----CCCCCCCCeEEEEe
Confidence 8877777766532 123443 446655 79999999999999886554 566677653 33456678999999
Q ss_pred cCcceEEeeCCC--CceEEEEEEeeeccCCCccccchhhhchhHHHHHHHHHHHHH
Q 003071 326 LPSGYLIRPCEG--GGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR 379 (850)
Q Consensus 326 lPSGclIq~~~n--G~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar~w~~aLr 379 (850)
.++|++|+++++ |.|+|||+-|+|..-+ +|. .|++..++=+.--++..||
T Consensus 152 ~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~---~lvN~~~~~~~~~~~~~Lr 203 (209)
T cd08905 152 GPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPK---SIINQVLSQTQVDFANHLR 203 (209)
T ss_pred eccEEEEEECCCCCCceEEEEEEeecCCCC-CCH---HHHHHHhHHhHHHHHHHHH
Confidence 999999999988 9999999999987755 664 5666666556666777775
No 37
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.62 E-value=2.1e-08 Score=104.33 Aligned_cols=62 Identities=24% Similarity=0.441 Sum_probs=58.0
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 21 IMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 21 ~~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
.+.++.|+.|+..|+++||+.|++.+||+...|+.||..+ ++++..|++||||||+||+++.
T Consensus 58 ~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~----~~~e~rVqvwFqnrrak~r~~~ 119 (235)
T KOG0490|consen 58 FSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLL----TGDEFRVQVWFQNRRAKDRKEE 119 (235)
T ss_pred ccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcC----CCCeeeeehhhhhhcHhhhhhh
Confidence 3557889999999999999999999999999999999999 9999999999999999999854
No 38
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.58 E-value=2e-07 Score=110.43 Aligned_cols=129 Identities=26% Similarity=0.393 Sum_probs=106.0
Q ss_pred ceecceeEEeeChhhHHHHhcCch----hhhhhCCcceEEeeccCCCcchHHHHHHHhh--ccccccCCceeeEEeecee
Q 003071 219 VAARACGLVGLDPTRVAEILKDRP----SWYRDCRSVEVVNVLPTGSSGTIELLYMQLY--APTTLAPARDFWLLRYTSV 292 (850)
Q Consensus 219 EASR~~glV~m~~~~LVe~lmD~~----~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~--v~SPLVp~Re~~fLRyckq 292 (850)
-+=|+.|+|...+.+|.|.+|+.+ +|=..|-..++|+.+. |...++|.-++ .+...+-+|||+++||-+.
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID----~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr 302 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVD----GHTAILYHRLQLDWFPMFVWPRDLCYVRYWRR 302 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEec----CCeEEEEEEeccccccCccCcceeEEEEEEEE
Confidence 577899999999999999999766 8888888888888775 33344443332 3446677799999999999
Q ss_pred eCCCcEEEEEeecCCCCCCCCCCCCCCccceeecCcceEEeeCC--C--CceEEEEEEeeeccCCCc
Q 003071 293 LEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCE--G--GGSIIHIVDHMDLEPWSV 355 (850)
Q Consensus 293 ~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~--n--G~skVtwVeH~e~d~~~v 355 (850)
.+||+++|+=+|+.. +.-|+...|+|++..|+||+|.|++ + -.|.|+|+-|++..-|..
T Consensus 303 ~eDGsYvil~~Sv~H----p~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~ 365 (719)
T PLN00188 303 NDDGSYVVLFRSREH----ENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV 365 (719)
T ss_pred cCCCcEEEeeeeeec----CCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccc
Confidence 999999999999874 4455677899999999999999964 3 379999999999998875
No 39
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.53 E-value=6.5e-07 Score=92.40 Aligned_cols=166 Identities=28% Similarity=0.409 Sum_probs=123.6
Q ss_pred HHHHHHHHHHhcCCCcceEeCCCCCCCCCcccee--eccCCCccceecceeEEeeChhhHHHHhcC-chhhhhhCCcceE
Q 003071 177 EETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIV--AISHGCTGVAARACGLVGLDPTRVAEILKD-RPSWYRDCRSVEV 253 (850)
Q Consensus 177 ~~am~El~~la~~~~plWi~~~g~~~g~~~~~~~--~~~~~~~~EASR~~glV~m~~~~LVe~lmD-~~~W~~~f~~~~~ 253 (850)
+.+.++|++-+...+.-|.-... +.| +.+. +...++...+=|..+.|...+.++++.++| +.+|-..|-..++
T Consensus 4 ~~~~~~ll~~~~~~~~~W~~~~~-~~g---i~I~~k~~~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~Wd~~~~~~~v 79 (197)
T cd08869 4 ERCVQDLLREARDKSKGWVSVSS-SDH---VELAFKKVDDGHPLRLWRASTEVEAPPEEVLQRILRERHLWDDDLLQWKV 79 (197)
T ss_pred HHHHHHHHHHHhhccCCceEEec-CCc---EEEEEEeCCCCCcEEEEEEEEEeCCCHHHHHHHHHHHHhccchhhheEEE
Confidence 56788999999988999987532 122 2222 222334456778899999999999886665 5678888888888
Q ss_pred EeeccCCCcchHHHHHHHhhccccccCCceeeEEeecee-eCCCcEEEEEeecCCCCCCCCCCCCCCccceeecCcceEE
Q 003071 254 VNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSV-LEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLI 332 (850)
Q Consensus 254 l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq-~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclI 332 (850)
|+.+... ..+.|..+..|-| +++|||..+|+++. .++|..+|.=.|++... ..|+ .++|++.+++|++|
T Consensus 80 ie~id~~----~~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~---~~p~--g~VR~~~~~~g~~i 149 (197)
T cd08869 80 VETLDED----TEVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTE---PVPL--GGVRAVVLASRYLI 149 (197)
T ss_pred EEEecCC----cEEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCC---CCCC--CCEEEEEEeeeEEE
Confidence 8887643 2355555666766 59999999999875 78889999999986421 1222 88999999999999
Q ss_pred eeCCCCceEEEEEEeeeccCCCccc
Q 003071 333 RPCEGGGSIIHIVDHMDLEPWSVPE 357 (850)
Q Consensus 333 q~~~nG~skVtwVeH~e~d~~~vh~ 357 (850)
++.++|.|+||++-|+|.-- .+|.
T Consensus 150 ~p~~~~~t~vty~~~~Dp~G-~iP~ 173 (197)
T cd08869 150 EPCGSGKSRVTHICRVDLRG-RSPE 173 (197)
T ss_pred EECCCCCeEEEEEEEECCCC-CCCc
Confidence 99999999999999998643 4554
No 40
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.49 E-value=2.4e-06 Score=89.23 Aligned_cols=190 Identities=16% Similarity=0.201 Sum_probs=130.2
Q ss_pred hHHHHHHHHHHHHHHhcCCCcceEeCCCCCCCCCccceeeccCCCccceecceeEEeeChhhHH-HHhcCc---hhhhhh
Q 003071 172 LLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPTRVA-EILKDR---PSWYRD 247 (850)
Q Consensus 172 l~~lA~~am~El~~la~~~~plWi~~~g~~~g~~~~~~~~~~~~~~~EASR~~glV~m~~~~LV-e~lmD~---~~W~~~ 247 (850)
....+++||+++.++... +..|--....+.| +.++-......+-+=|.-++|...+..|. +.|.|. .+|-.-
T Consensus 6 ~~~~~~~~~~~~~~~l~~-~~~W~l~~~~~~g---i~V~s~~~~~~~~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~ 81 (209)
T cd08906 6 YVRQGKEALAVVEQILAQ-EENWKFEKNNDNG---DTVYTLEVPFHGKTFILKAFMQCPAELVYQEVILQPEKMVLWNKT 81 (209)
T ss_pred HHHHHHHHHHHHHHHhhc-ccCCEEEEecCCC---CEEEEeccCCCCcEEEEEEEEcCCHHHHHHHHHhChhhccccCcc
Confidence 467899999999999764 3479852111222 22221111111234478888888888885 677775 567666
Q ss_pred CCcceEEeeccCCCcchHHHHHHHhhcccc--ccCCceeeEEeeceeeCCCcEEEEEeecCCCCCCCCCCCCCCccceee
Q 003071 248 CRSVEVVNVLPTGSSGTIELLYMQLYAPTT--LAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEM 325 (850)
Q Consensus 248 f~~~~~l~~~~~g~~GalqLm~aE~~v~SP--LVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rr 325 (850)
+...++|..+.... -+.| +.-.|.+ .|..|||-.+|+.++.++| ++++..|++.. ..|+...|+|.+.
T Consensus 82 ~~~~~vi~~~~~~~----~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~----~~P~~~~~VR~~~ 151 (209)
T cd08906 82 VSACQVLQRVDDNT----LVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHS----HKPPLSKYVRGEN 151 (209)
T ss_pred chhhhheeeccCCc----EEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEecC----CCCCCCCeEEEee
Confidence 77777777766321 2334 4445543 6899999999999998888 57788888642 3456678999999
Q ss_pred cCcceEEeeC--CCCceEEEEEEeeeccCCCccccchhhhchhHHHHHHHHHHHHH
Q 003071 326 LPSGYLIRPC--EGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR 379 (850)
Q Consensus 326 lPSGclIq~~--~nG~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar~w~~aLr 379 (850)
.++|++|.+. .+|.|+|||+-|+|..- .+|. .+++..++=+.--++..||
T Consensus 152 ~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G-~lP~---~lvN~~~~~~~~~~~~~LR 203 (209)
T cd08906 152 GPGGFVVLKSASNPSVCTFIWILNTDLKG-RLPR---YLIHQSLAATMFEFASHLR 203 (209)
T ss_pred eccEEEEEECCCCCCceEEEEEEecCCCC-CCCH---HHHHHHHHHHHHHHHHHHH
Confidence 9999999985 57799999999998765 4554 5676666555555666665
No 41
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.49 E-value=7.1e-07 Score=92.98 Aligned_cols=128 Identities=30% Similarity=0.403 Sum_probs=96.9
Q ss_pred ceecceeEEeeChhhH-HHHhcCchhhhhhCCcceEEeeccCCCcchHHHHHHHhhccccccCCceeeEEeecee-eCCC
Q 003071 219 VAARACGLVGLDPTRV-AEILKDRPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSV-LEDG 296 (850)
Q Consensus 219 EASR~~glV~m~~~~L-Ve~lmD~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq-~~~G 296 (850)
-.-|....|.-.+..+ -.++.++.+|-..|-..++|+.+... ..+.|--+.-|-|+ |.|||+.+|+-++ +++|
T Consensus 52 k~~r~~~ei~~~p~~VL~~vl~~R~~WD~~~~~~~~ie~ld~~----tdi~~y~~~~~~P~-~~RD~v~~R~w~~~~~~G 126 (205)
T cd08909 52 RLWKVSVEVEAPPSVVLNRVLRERHLWDEDFLQWKVVETLDKQ----TEVYQYVLNCMAPH-PSRDFVVLRSWRTDLPKG 126 (205)
T ss_pred EEEEEEEEeCCCHHHHHHHHHhhHhhHHhhcceeEEEEEeCCC----cEEEEEEeecCCCC-CCCEEEEEEEEEEeCCCC
Confidence 4567666666666666 44677889999999888888877632 22233333345565 9999999999765 5799
Q ss_pred cEEEEEeecCCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCCCccc
Q 003071 297 SLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPE 357 (850)
Q Consensus 297 ~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~ 357 (850)
..+|+..|++... .|+ ..++|+..+-+|++|+++++|.|+||++-|++..-+ +|.
T Consensus 127 ~~vi~~~Sv~H~~----~p~-~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~-~P~ 181 (205)
T cd08909 127 ACSLVSVSVEHEE----APL-LGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGH-SPE 181 (205)
T ss_pred cEEEEEecCCCCc----CCC-CCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCC-ChH
Confidence 9999999998643 223 378999999999999999999999999999987533 444
No 42
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.41 E-value=1.5e-07 Score=105.28 Aligned_cols=65 Identities=28% Similarity=0.554 Sum_probs=59.4
Q ss_pred CCCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 18 QKMIMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 18 ~~~~~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
..+++.+|+|+.|++.|+..||+.|+.++||+...|++||.+. ++.+..|++||+|||+|++|..
T Consensus 171 ~~~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i----~l~e~riqvwf~nrra~~rr~~ 235 (354)
T KOG0849|consen 171 ALQRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKET----GLPEPRVQVWFQNRRAKWRRQH 235 (354)
T ss_pred cccccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhc----cCCchHHHHHHhhhhhhhhhcc
Confidence 3344567788999999999999999999999999999999999 9999999999999999999844
No 43
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.31 E-value=4.2e-07 Score=96.55 Aligned_cols=61 Identities=21% Similarity=0.434 Sum_probs=57.4
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
.+||||+.+.....+.||.+|..+|.|+.+.+..+|.+| .|.+..|+|||+|.|.|.||.+
T Consensus 308 ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekL----DLKKNVVRVWFCNQRQKQKRm~ 368 (385)
T KOG1168|consen 308 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKL----DLKKNVVRVWFCNQRQKQKRMK 368 (385)
T ss_pred ccccccccccCcccccHHHHhccCCCCchhHHHHHHHhh----hhhhceEEEEeeccHHHHHHhh
Confidence 457889999999999999999999999999999999999 9999999999999999999854
No 44
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.18 E-value=1e-05 Score=83.71 Aligned_cols=176 Identities=19% Similarity=0.292 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEeCCCCCCCCCc-cceeeccCCCccceecceeEEeeChhhHHHHhcC---chhhhhhC
Q 003071 173 LSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDS-IGIVAISHGCTGVAARACGLVGLDPTRVAEILKD---RPSWYRDC 248 (850)
Q Consensus 173 ~~lA~~am~El~~la~~~~plWi~~~g~~~g~~~-~~~~~~~~~~~~EASR~~glV~m~~~~LVe~lmD---~~~W~~~f 248 (850)
..+|.+.-+++++--+.++-.|-.-.. ..+. +-..| +.-+.+---|.-|+|.-.+..|++.+-+ +.+|=+.+
T Consensus 4 ~~~~~~~~~~~~~y~~~~~~~Wkl~k~---~~~~~v~~k~-~~ef~gkl~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v 79 (202)
T cd08902 4 ASKTTKLQNTLIQYHSILEEEWRVAKK---SKDVTVWRKP-SEEFGGYLYKAQGVVEDVYNRIVDHIRPGPYRLDWDSLM 79 (202)
T ss_pred HHHHHHHHHHHHHhccccccCcEEEEe---CCCEEEEEec-CCcCCCceEEEEEEecCCHHHHHHHHhcccchhcccchh
Confidence 567878888888876778999976421 1111 11111 1233445668889999999999999999 55999988
Q ss_pred CcceEEeeccCCCcchHHHH-HHHhhccccccCCceeeEEeeceeeCCCcEEEEEeecCCCCCCCCCCCCCCccceeecC
Q 003071 249 RSVEVVNVLPTGSSGTIELL-YMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLP 327 (850)
Q Consensus 249 ~~~~~l~~~~~g~~GalqLm-~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlP 327 (850)
-..++|+.|..+ + .++ |.=.-.+-++|-+|||.-+||+++-++|. ..|=||++.- .+| +.|+|++..|
T Consensus 80 ~~~~Iie~Id~d---t-~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~----~~p--pg~VRgen~p 148 (202)
T cd08902 80 TSMDIIEEFEEN---C-CVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYE----EAR--PNFVRGFNHP 148 (202)
T ss_pred hheeHhhhhcCC---c-EEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCC----CCC--CCeEeecccc
Confidence 777777655533 1 111 22223566789999999999999999999 6777887742 122 2899999999
Q ss_pred cceEEeeCCCC--ceEEEEEEeeeccCCCccccchhhhchhH
Q 003071 328 SGYLIRPCEGG--GSIIHIVDHMDLEPWSVPEVLRPLYESST 367 (850)
Q Consensus 328 SGclIq~~~nG--~skVtwVeH~e~d~~~vh~lyRpl~~Sg~ 367 (850)
+||++.+.+|| .|+.||+-++|+.-+ +| +-++++.+
T Consensus 149 ~g~i~~Pl~~~p~k~~~t~~lq~DLkG~-LP---qsiIdq~~ 186 (202)
T cd08902 149 CGWFCVPLKDNPSHSLLTGYIQTDLRGM-LP---QSAVDTAM 186 (202)
T ss_pred cEEEEEECCCCCCceEEEEEEEecCCCC-cc---HHHHHHHh
Confidence 99999999998 677889999887744 44 34554444
No 45
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=98.05 E-value=3e-05 Score=80.90 Aligned_cols=167 Identities=23% Similarity=0.368 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHhcCCCcceEeCCCCCCCCCccceee--ccCCCccceecceeEEeeChhhHHHH-hcCchhhhhhCCcc
Q 003071 175 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVA--ISHGCTGVAARACGLVGLDPTRVAEI-LKDRPSWYRDCRSV 251 (850)
Q Consensus 175 lA~~am~El~~la~~~~plWi~~~g~~~g~~~~~~~~--~~~~~~~EASR~~glV~m~~~~LVe~-lmD~~~W~~~f~~~ 251 (850)
.-++.+++|++.|..--=-|+.... .+...+.. .+.|..--.=|....+.-.+.+++.. +-|+.+|-..+-..
T Consensus 10 ~~~~~~~~l~~e~~~k~k~w~~~~~----~~~~el~~~k~~~gs~l~~~r~~~~i~a~~~~vl~~lld~~~~Wd~~~~e~ 85 (204)
T cd08908 10 FLQDCVDGLFKEVKEKFKGWVSYST----SEQAELSYKKVSEGPPLRLWRTTIEVPAAPEEILKRLLKEQHLWDVDLLDS 85 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccCC----CCcEEEEEeccCCCCCcEEEEEEEEeCCCHHHHHHHHHhhHHHHHHHhhhe
Confidence 4467778888887644445555311 11111111 11222334557777777777787744 44577899999999
Q ss_pred eEEeeccCCCcchHHHHHHHhhccccccCCceeeEEeece-eeCCCcEEEEEeecCCCCCCCCCCCCCCccceeecCcce
Q 003071 252 EVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTS-VLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGY 330 (850)
Q Consensus 252 ~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyck-q~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGc 330 (850)
++|+-++... .+.|..+..|-| +|.|||.++|-.+ +.++|..+|+-.|++... .| . .++|.+.+-+|+
T Consensus 86 ~vIe~ld~~~----~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~----~P-~-~~VR~~~~~~~w 154 (204)
T cd08908 86 KVIEILDSQT----EIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHDR----AP-V-AGVRVNVLLSRY 154 (204)
T ss_pred EeeEecCCCc----eEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCccc----CC-c-CceEEEEEeeEE
Confidence 9998877432 255666678888 7999999997765 589999999999998532 22 2 368999999999
Q ss_pred EEeeCCCCceEEEEEEeeeccCCCccc
Q 003071 331 LIRPCEGGGSIIHIVDHMDLEPWSVPE 357 (850)
Q Consensus 331 lIq~~~nG~skVtwVeH~e~d~~~vh~ 357 (850)
+|+++++|.|+||.+-|+|--- .+|.
T Consensus 155 ~i~P~g~g~t~vtyi~~~DPgG-~iP~ 180 (204)
T cd08908 155 LIEPCGSGKSKLTYMCRIDLRG-HMPE 180 (204)
T ss_pred EEEECCCCcEEEEEEEEeCCCC-CCcH
Confidence 9999999999999999997532 4554
No 46
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.01 E-value=3.6e-06 Score=89.43 Aligned_cols=51 Identities=25% Similarity=0.550 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHH
Q 003071 30 YTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (850)
Q Consensus 30 ~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 84 (850)
|-..-+..|..+|..++||++.++.+||+.. ||+..||-.||.|||.|+|.
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aT----gLt~tQVsNWFKNRRQRDRa 233 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEAT----GLTITQVSNWFKNRRQRDRA 233 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHh----CCchhhhhhhhhhhhhhhhh
Confidence 5556678999999999999999999999999 99999999999999999883
No 47
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.95 E-value=2.3e-05 Score=81.81 Aligned_cols=127 Identities=23% Similarity=0.323 Sum_probs=93.2
Q ss_pred cceeEEeeChhhHHHHhcCc---hhhhhhCCcceEEeeccCCCcchHHHHHHHhhccccc-cCCceeeEEeeceeeCCCc
Q 003071 222 RACGLVGLDPTRVAEILKDR---PSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTL-APARDFWLLRYTSVLEDGS 297 (850)
Q Consensus 222 R~~glV~m~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPL-Vp~Re~~fLRyckq~~~G~ 297 (850)
|.-+.|...+.+|.+.|.|. .+|-.++...++|+.+.... .++|.....|=|+ ++.|||..+|-....+++.
T Consensus 48 ~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~----~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~ 123 (205)
T cd08874 48 LGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDI----CLVYLVHETPLCLLKQPRDFCCLQVEAKEGELS 123 (205)
T ss_pred EEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCe----EEEEEEecCCCCCCCCCCeEEEEEEEEECCCcE
Confidence 44567888999999999885 57888999999998766431 2344333333333 3999999999554544444
Q ss_pred EEEEEeecCCCCCCCCCCCCC-CccceeecCcceEEeeC---CCCceEEEEEEeeeccCCCccc
Q 003071 298 LVVCERSLNNTQNGPSMPQAP-HFVRAEMLPSGYLIRPC---EGGGSIIHIVDHMDLEPWSVPE 357 (850)
Q Consensus 298 waVvDvSld~~~~~~~~~~~~-~~~r~rrlPSGclIq~~---~nG~skVtwVeH~e~d~~~vh~ 357 (850)
+|.=.|++. +..|+.. .++|.+.+++|++|+++ ++|.|+||.+-|+|.--..+|.
T Consensus 124 -vi~~~SV~~----~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~ 182 (205)
T cd08874 124 -VVACQSVYD----KSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPA 182 (205)
T ss_pred -EEEEEeccc----ccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCH
Confidence 466677764 2344444 79999999999999999 9999999999999976456664
No 48
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=97.85 E-value=0.00011 Score=64.71 Aligned_cols=101 Identities=12% Similarity=0.092 Sum_probs=83.5
Q ss_pred CCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcEEE
Q 003071 743 SDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISY 822 (850)
Q Consensus 743 p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i 822 (850)
|.+|+.++. |=.++|+|.+++++|+++-+++.+.+...-..+..+.+..+.+.++.++|-...+.-.-..+.|+.+++
T Consensus 1 p~~i~i~d~--~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~ 78 (104)
T PF13426_consen 1 PDGIFILDP--DGRILYVNPAFERLFGYSREELIGKSISDFFPEEDRPEFEEQIERALEEGGSWSGEVRLRRKDGETFWV 78 (104)
T ss_dssp -SEEEEEET--TSBEEEE-HHHHHHHTS-HHHHTTSBGGGGCSTTSCHHHHHHHHHHHHHTSSEEEEEEEEETTSEEEEE
T ss_pred CEEEEEECC--cCcEEehhHHHHHHHCcCHHHHcCCCcccccCcccchhhHHHHHHHHhcCCceeEEEEEEcCCCCEEEE
Confidence 677888877 688999999999999999999999999888877777778888888888777677677777899999888
Q ss_pred eeeEEeEeecCCCceEEEEEeccc
Q 003071 823 ERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 823 ~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
...+-.+.|++|+..|..+++.|
T Consensus 79 -~~~~~~i~~~~g~~~~~i~~~~D 101 (104)
T PF13426_consen 79 -EVSASPIRDEDGEITGIIGIFRD 101 (104)
T ss_dssp -EEEEEEEEETTSSEEEEEEEEEE
T ss_pred -EEEEEEEECCCCCEEEEEEEEEE
Confidence 56888899999999998888765
No 49
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=97.80 E-value=0.00017 Score=75.15 Aligned_cols=175 Identities=16% Similarity=0.253 Sum_probs=119.7
Q ss_pred CCCcceEeCCCCCCCCCccceee-ccCCCccceecceeEEe-eChhhHHHHhcCc---hhhhhhCCcceEEeeccCCCcc
Q 003071 189 GTAVEWVQMPGMKPGPDSIGIVA-ISHGCTGVAARACGLVG-LDPTRVAEILKDR---PSWYRDCRSVEVVNVLPTGSSG 263 (850)
Q Consensus 189 ~~~plWi~~~g~~~g~~~~~~~~-~~~~~~~EASR~~glV~-m~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~G 263 (850)
.+.+.|-..... .| +.++- ...+...-.=|+.+.+. ..+..|.++|+|. .+|...+-. ++...+.+
T Consensus 22 ~~~~~W~l~~~~-~~---i~Vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~--~~~~~~~~--- 92 (207)
T cd08910 22 LDGAAWELLVES-SG---ISIYRLLDEQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKE--LYEKECDG--- 92 (207)
T ss_pred CCCCCeEEEEec-CC---eEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh--heeecCCC---
Confidence 345779875321 12 22221 11233334678888888 7999999999995 567766543 44433322
Q ss_pred hHHHHHHHhhccccccCCceeeEEeece-eeCCC--cEEEEEeecCCCCCCCCCCCCCCccceeecCcceEEeeCCCCce
Q 003071 264 TIELLYMQLYAPTTLAPARDFWLLRYTS-VLEDG--SLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGS 340 (850)
Q Consensus 264 alqLm~aE~~v~SPLVp~Re~~fLRyck-q~~~G--~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~s 340 (850)
-.++|..+..|-| |..||+.++|-.. .-.+| .|+|+..|++. |..|....++|....-+|++|++..++.|
T Consensus 93 -~~i~y~~~k~PwP-vs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~----p~~P~~~~~VRv~~~~~~~~i~p~~~~~t 166 (207)
T cd08910 93 -ETVIYWEVKYPFP-LSNRDYVYIRQRRDLDVEGRKIWVILARSTSL----PQLPEKPGVIRVKQYKQSLAIESDGKKGS 166 (207)
T ss_pred -CEEEEEEEEcCCC-CCCceEEEEEEeccccCCCCeEEEEEecCCCC----CCCCCCCCCEEEEEEEEEEEEEeCCCCce
Confidence 2456778888999 9999999986443 33344 68888888763 23455568999999999999999988999
Q ss_pred EEEEEEeeeccCCCccccchhhhchhHHHHHHHHHHHHH-HHh
Q 003071 341 IIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLR 382 (850)
Q Consensus 341 kVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar~w~~aLr-~~e 382 (850)
+||++-|.+-. ..+|. -+++.....+.-.++..|| .|.
T Consensus 167 ~i~~~~~~DPg-G~IP~---wlvN~~~~~~~~~~l~~l~ka~~ 205 (207)
T cd08910 167 KVFMYYFDNPG-GMIPS---WLINWAAKNGVPNFLKDMQKACQ 205 (207)
T ss_pred EEEEEEEeCCC-CcchH---HHHHHHHHHhhHHHHHHHHHHHh
Confidence 99999999852 35664 4666666667777788886 564
No 50
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=97.71 E-value=0.00079 Score=70.15 Aligned_cols=190 Identities=19% Similarity=0.253 Sum_probs=137.2
Q ss_pred HHHHHHHHhcCC--CcceEeCCCCCCCCCc-cceeec-cCCCccceecceeEE-eeChhhHHHHhcCc---hhhhhhCCc
Q 003071 179 TLTEFLSKATGT--AVEWVQMPGMKPGPDS-IGIVAI-SHGCTGVAARACGLV-GLDPTRVAEILKDR---PSWYRDCRS 250 (850)
Q Consensus 179 am~El~~la~~~--~plWi~~~g~~~g~~~-~~~~~~-~~~~~~EASR~~glV-~m~~~~LVe~lmD~---~~W~~~f~~ 250 (850)
=++||+...+.. ...|-.... |.|+.+ +.+.-. ..+...-.=|..+++ .+.+..|.+.|+|. .+|-..|-.
T Consensus 7 d~~~~~~~~~~~~~~~~W~~~~~-k~~~~~~i~vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~ 85 (209)
T cd08870 7 DLRDLVQELQEGAEGQAWQQVMD-KSTPDMSYQAWRRKPKGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIE 85 (209)
T ss_pred HHHHHHHHhcCcCCCCcceEhhh-ccCCCceEEEEecccCCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheee
Confidence 345666665543 257988643 234322 322211 122333567888888 57999999999994 578888888
Q ss_pred ceEEeeccCCCcchHHHHHHHhhccccccCCceeeEEeeceeeCCCcEEEEEeecCCCCCCCCCCCCCCccceeecCcce
Q 003071 251 VEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGY 330 (850)
Q Consensus 251 ~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGc 330 (850)
.++|+.... .| ..++|..+..|-|+ -.||+-..|=..+..+|..+|+=.|++. +..|.. .++|.+..=||+
T Consensus 86 ~~~le~~~~--~~-~~i~y~~~~~P~P~-s~RD~V~~r~~~~~~~~~~~i~~~sv~~----~~~P~~-~~vRv~~~~~~~ 156 (209)
T cd08870 86 HETLEEDEK--SG-TEIVRWVKKFPFPL-SDREYVIARRLWESDDRSYVCVTKGVPY----PSVPRS-GRKRVDDYESSL 156 (209)
T ss_pred EEEEEecCC--CC-cEEEEEEEECCCcC-CCceEEEEEEEEEcCCCEEEEEEeCCcC----CCCCCC-CcEEEEEEEeEE
Confidence 888877442 12 35688888899888 9999999987777778999888888774 223444 789999999999
Q ss_pred EEeeC--CCCceEEEEEEeeeccCCCccccchhhhchhHHHHHHHHHHHHH-HHh
Q 003071 331 LIRPC--EGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLR 382 (850)
Q Consensus 331 lIq~~--~nG~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar~w~~aLr-~~e 382 (850)
+|++. .+|.++++++-|.+- ...+|. -|++.....|...++..|| .|+
T Consensus 157 ~i~p~~~~~~~t~~~~~~~~dp-~G~IP~---wlvN~~~~~~~~~~l~~l~~a~~ 207 (209)
T cd08870 157 VIRAVKGDGQGSACEVTYFHNP-DGGIPR---ELAKLAVKRGMPGFLKKLENALR 207 (209)
T ss_pred EEEEecCCCCceEEEEEEEECC-CCCCCH---HHHHHHHHhhhHHHHHHHHHHHh
Confidence 99999 789999999999973 335775 6777778888888899886 564
No 51
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.67 E-value=0.00057 Score=71.23 Aligned_cols=168 Identities=23% Similarity=0.362 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHhcCCCcceEeCCCCCCCCCccceeeccCCCccceecceeEE-eeChhhHHHHhcCchhhhhhCCcce
Q 003071 174 SIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLV-GLDPTRVAEILKDRPSWYRDCRSVE 252 (850)
Q Consensus 174 ~lA~~am~El~~la~~~~plWi~~~g~~~g~~~~~~~~~~~~~~~EASR~~glV-~m~~~~LVe~lmD~~~W~~~f~~~~ 252 (850)
..-++.+++|++.++...=-|+...+ +.+-+.. ....+.|..---=|.+.-| ...+.-|-++|.|+..|=+.+-...
T Consensus 9 ~~l~~~~~~~lre~~ek~kgW~~~~~-~~~vev~-~kk~~d~~~l~lwk~s~ei~~~p~~vl~rvL~dR~~WD~~m~e~~ 86 (205)
T cd08907 9 AYLEDNVQCLLREASERFKGWHSAPG-PDNTELA-CKKVGDGHPLRLWKVSTEVEAPPSVVLQRVLRERHLWDEDLLHSQ 86 (205)
T ss_pred HHHHHHHHHHHHHhhhccCCceeecC-CCCcEEE-EEeCCCCCceEEEEEEEEecCCCHHHHHHHhhchhhhhHHHHhhh
Confidence 34578889999999877888987532 1121111 0001111111111222222 2345667899999999999886555
Q ss_pred EEeeccCCCc-chHHHHHHHhhcc--ccccCCceeeEEeece-eeCCCcEEEEEeecCCCCCCCCCCCCCCccceeecCc
Q 003071 253 VVNVLPTGSS-GTIELLYMQLYAP--TTLAPARDFWLLRYTS-VLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPS 328 (850)
Q Consensus 253 ~l~~~~~g~~-GalqLm~aE~~v~--SPLVp~Re~~fLRyck-q~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPS 328 (850)
+|+.+.-... | | |+. .+.+|+|||.+||.-+ .++.|.-+|+.+|++... .|+... +|+--+=|
T Consensus 87 ~Ie~Ld~n~dI~--y------Y~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~----~pp~~g-VRa~~l~s 153 (205)
T cd08907 87 VIEALENNTEVY--H------YVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDN----PQLEAG-VRAVLLTS 153 (205)
T ss_pred hheeecCCCEEE--E------EEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCc----CCCCCC-eEEEEEec
Confidence 5555542211 1 0 222 2568999999999865 477889999999998643 233334 89999999
Q ss_pred ceEEeeCCCCceEEEEEEeeeccCCCccc
Q 003071 329 GYLIRPCEGGGSIIHIVDHMDLEPWSVPE 357 (850)
Q Consensus 329 GclIq~~~nG~skVtwVeH~e~d~~~vh~ 357 (850)
||||++++.|.|+||-+-|++..-+ .|+
T Consensus 154 gYlIep~g~g~s~ltyi~rvD~rG~-~P~ 181 (205)
T cd08907 154 QYLIEPCGMGRSRLTHICRADLRGR-SPD 181 (205)
T ss_pred cEEEEECCCCCeEEEEEEEeCCCCC-CcH
Confidence 9999999999999999999987544 443
No 52
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.61 E-value=0.00048 Score=73.39 Aligned_cols=172 Identities=18% Similarity=0.220 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHhcC--CCcceEeCCCCCCCCCccceeeccCCCccceecceeEEe-eChhhHHHHhcCch---hhhhh
Q 003071 174 SIAEETLTEFLSKATG--TAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVG-LDPTRVAEILKDRP---SWYRD 247 (850)
Q Consensus 174 ~lA~~am~El~~la~~--~~plWi~~~g~~~g~~~~~~~~~~~~~~~EASR~~glV~-m~~~~LVe~lmD~~---~W~~~ 247 (850)
..-++-.+|.+++|.. ++.-|--... +.|-.++.......|.....=|+.++|. ..+..+.+.|.|.+ +|-..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~W~l~~~-~~gikVy~r~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~ 84 (235)
T cd08872 6 PEVDEKVQEQLTYALEDVGADGWQLFAE-EGEMKVYRREVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETT 84 (235)
T ss_pred HHHHHHHHHHHHHHHccCCCCCCEEEEe-CCceEEEEEECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhh
Confidence 3446778899999973 4667876421 1121111110000122223568888888 88999999999975 56667
Q ss_pred CCcceEEeeccCCCcchHHHHHHHhhccccccCCceeeEEeeceeeCC-------CcEEEEEeecCCCCCCCCCCCCCCc
Q 003071 248 CRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLED-------GSLVVCERSLNNTQNGPSMPQAPHF 320 (850)
Q Consensus 248 f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~-------G~waVvDvSld~~~~~~~~~~~~~~ 320 (850)
|-..++|+.++.+. .+.|..+-.|=| +..|||.++|+.++.++ +.|+||..|++. +..|+...|
T Consensus 85 ~~~~~vie~l~~~~----~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h----~~~P~~~g~ 155 (235)
T cd08872 85 LENFHVVETLSQDT----LIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDH----DSAPLNNKC 155 (235)
T ss_pred hheeEEEEecCCCC----EEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEecccC----ccCCCCCCe
Confidence 77778888776432 245666667888 69999999999998876 789999999874 234555678
Q ss_pred cceee---cCcceEEeeC--------CCCceEEEEEEeeeccCCCcc
Q 003071 321 VRAEM---LPSGYLIRPC--------EGGGSIIHIVDHMDLEPWSVP 356 (850)
Q Consensus 321 ~r~rr---lPSGclIq~~--------~nG~skVtwVeH~e~d~~~vh 356 (850)
+|.+. +=.|.+|.+= .||.|+||++-|++---+ +|
T Consensus 156 VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG~-iP 201 (235)
T cd08872 156 VRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGGW-AP 201 (235)
T ss_pred EEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCCC-cc
Confidence 88875 2234344331 588999999999975433 44
No 53
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.60 E-value=3.3e-05 Score=81.53 Aligned_cols=57 Identities=30% Similarity=0.589 Sum_probs=53.7
Q ss_pred CCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHH
Q 003071 24 NGKYVRYTPEQVEALERLYHE---CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (850)
Q Consensus 24 rr~R~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 84 (850)
+|||..|+..-.+.|.++|.. +|||+...+++||+++ |++..||-.||.|+|-+.||
T Consensus 189 rRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqC----nItvsQvsnwfgnkrIrykK 248 (334)
T KOG0774|consen 189 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQC----NITVSQVSNWFGNKRIRYKK 248 (334)
T ss_pred HHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHc----Cceehhhccccccceeehhh
Confidence 688899999999999999965 5999999999999999 99999999999999999887
No 54
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.50 E-value=0.0016 Score=68.04 Aligned_cols=197 Identities=15% Similarity=0.190 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcceEeCCCCCCCCCccceeec-cCCCccceecceeEEeeChhhHHHHhcCchhhhh---hC
Q 003071 173 LSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAI-SHGCTGVAARACGLVGLDPTRVAEILKDRPSWYR---DC 248 (850)
Q Consensus 173 ~~lA~~am~El~~la~~~~plWi~~~g~~~g~~~~~~~~~-~~~~~~EASR~~glV~m~~~~LVe~lmD~~~W~~---~f 248 (850)
++-+...|.|+++.-+. +.-|..... +.| +.++-. .++....+-|.-|++.-++..+.++|.|.+...+ .|
T Consensus 4 ~~~~~~~~~~~~~~l~~-~~~W~~~~~-~~~---i~v~~r~~~~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~ 78 (215)
T cd08877 4 IRQEATIMQENLKDLDE-SDGWTLQKE-SEG---IRVYYKFEPDGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFC 78 (215)
T ss_pred HHHHHHHHHHHHhcccC-CCCcEEecc-CCC---eEEEEEeCCCCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccc
Confidence 44455778888877665 556987532 112 222211 1222246778999999999999999999865444 44
Q ss_pred CcceEEeeccCCCcchHHHHHHHhhccccccCCceeeEE-eeceee-CCCcEEEEEeecCCCCC-----CCCCCCCC-Cc
Q 003071 249 RSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLL-RYTSVL-EDGSLVVCERSLNNTQN-----GPSMPQAP-HF 320 (850)
Q Consensus 249 ~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fL-Ryckq~-~~G~waVvDvSld~~~~-----~~~~~~~~-~~ 320 (850)
-..++|..+.-. -++.|..+-+|-| +..||+.+. +.+..+ ++|..+|+=.|++.... ....|..+ .+
T Consensus 79 ~~~~~l~~~~~~----~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~ 153 (215)
T cd08877 79 IRSKKVKQLGRA----DKVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKG 153 (215)
T ss_pred eeeEEEeecCCc----eEEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCc
Confidence 444566554422 1345555566777 888999985 556677 99999999999985432 11134445 78
Q ss_pred cceeecCcceEEeeCCCCceEEEEEEeeeccCCCccccchhhhchhHHHHHHHHHHHHH-HHh
Q 003071 321 VRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLR 382 (850)
Q Consensus 321 ~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar~w~~aLr-~~e 382 (850)
+|.+...+|++|+++++|.|+|+++-|++-.-+-+|. -|++...--.....+..|| .|+
T Consensus 154 vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~---~liN~~~k~~~~~~~~~l~k~~~ 213 (215)
T cd08877 154 VRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPK---SLLNFVARKFAGLLFEKIQKAAK 213 (215)
T ss_pred eEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999997633232775 3444434334445555554 443
No 55
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.44 E-value=0.00064 Score=69.20 Aligned_cols=146 Identities=18% Similarity=0.269 Sum_probs=98.3
Q ss_pred ceecceeEEeeChhhHHHHhcCchhhhh---hCCcceEEeeccCCCcchHHHHHHHhhccccccCCceeeEEeeceee-C
Q 003071 219 VAARACGLVGLDPTRVAEILKDRPSWYR---DCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVL-E 294 (850)
Q Consensus 219 EASR~~glV~m~~~~LVe~lmD~~~W~~---~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~-~ 294 (850)
-.-|.+++|..++.++.++++|.+.+.+ .|...++|+....+. .++|..+..|=| |..|||.+.|..... +
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~----~i~~~~~~~p~p-vs~Rdfv~~~~~~~~~~ 115 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNE----RSVYTVIDLPWP-VKDRDMVLRSTTEQDAD 115 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCc----EEEEEEEecccc-cCCceEEEEEEEEEcCC
Confidence 4558899999999999999999766554 455556666543321 234444444444 789999987654433 3
Q ss_pred CCcEEEEEeecCCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCCCccc-cchhhhchhHHHHHHH
Q 003071 295 DGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPE-VLRPLYESSTLIAQKT 373 (850)
Q Consensus 295 ~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~-lyRpl~~Sg~afgar~ 373 (850)
+|..+|.=.|.+.. .|....|+|.+.+.+|+.|++.++|.|+||++-|++..-+ +|. +.+.+. .=+...
T Consensus 116 ~~~~~i~~~s~~~~-----~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~-iP~~lv~~~~----~~~~~~ 185 (195)
T cd08876 116 DGSVTITLEAAPEA-----LPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGS-IPGWLANAFA----KDAPYN 185 (195)
T ss_pred CCEEEEEeecCCcc-----CCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCC-CCHHHHHHHH----HHHHHH
Confidence 67776666666532 1233478899999999999999999999999999998643 443 333332 224445
Q ss_pred HHHHHH
Q 003071 374 TMAALR 379 (850)
Q Consensus 374 w~~aLr 379 (850)
++.+|+
T Consensus 186 ~l~~l~ 191 (195)
T cd08876 186 TLENLR 191 (195)
T ss_pred HHHHHH
Confidence 666664
No 56
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=97.41 E-value=0.00048 Score=73.45 Aligned_cols=121 Identities=24% Similarity=0.293 Sum_probs=92.0
Q ss_pred eecceeEEeeChhhHHHHhcCch---hhhhhCCcceEEeeccCCCcchHHHHHHHhhccccccCCceeeEEeeceee-CC
Q 003071 220 AARACGLVGLDPTRVAEILKDRP---SWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVL-ED 295 (850)
Q Consensus 220 ASR~~glV~m~~~~LVe~lmD~~---~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~-~~ 295 (850)
+=|.-+.|...+.+|++.|.|.+ +|-..+..+++|+.+... .+ ++|..+..|. -+..|||-++|+.++. ++
T Consensus 78 ~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d-~~---iyy~~~p~Pw-Pvk~RDfV~~~s~~~~~~~ 152 (235)
T cd08873 78 SFCVELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGED-DG---IYHTTMPSLT-SEKPNDFVLLVSRRKPATD 152 (235)
T ss_pred EEEEEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCC-cE---EEEEEcCCCC-CCCCceEEEEEEEEeccCC
Confidence 34566668889999999999965 677777788888876632 12 3443333333 4889999999999984 44
Q ss_pred C-cEEEEEeecCCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeee
Q 003071 296 G-SLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMD 349 (850)
Q Consensus 296 G-~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e 349 (850)
| ..+|.=.|+.. +..|+.+.|+|.+.+=+|++|++.++|.|+||.+-|+|
T Consensus 153 ~~~~~I~~~SV~h----~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 153 GDPYKVAFRSVTL----PRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNETN 203 (235)
T ss_pred CCeEEEEEeeeec----ccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcC
Confidence 3 37777777652 23456678999999999999999999999999999986
No 57
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.13 E-value=0.0023 Score=66.79 Aligned_cols=148 Identities=22% Similarity=0.341 Sum_probs=107.2
Q ss_pred ceecceeEE-eeChhhHHHHhcCch---hhhhhCCcceEEeeccCCCcchHHHHHHHhhccccccCCceeeEEeeceee-
Q 003071 219 VAARACGLV-GLDPTRVAEILKDRP---SWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVL- 293 (850)
Q Consensus 219 EASR~~glV-~m~~~~LVe~lmD~~---~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~- 293 (850)
..=|+.+++ ...+..+++.|+|.+ +|...+-..++|+....- + ..++|..+..|-|+ -.||+.+.|-..+.
T Consensus 45 ~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~--~-~~i~y~~~~~P~P~-s~RD~V~~r~~~~~~ 120 (207)
T cd08911 45 YEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPET--G-SEIIYWEMQWPKPF-ANRDYVYVRRYIIDE 120 (207)
T ss_pred EEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCC--C-CEEEEEEEECCCCC-CCccEEEEEEEEEcC
Confidence 356776655 789999999999964 688888888888864321 2 24677788899886 99999998876665
Q ss_pred CCCcEEEEEeecCCCCCCCCCCCCCCccceeecCcceEEeeCC---CCceEEEEEEeeeccCC-CccccchhhhchhHHH
Q 003071 294 EDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCE---GGGSIIHIVDHMDLEPW-SVPEVLRPLYESSTLI 369 (850)
Q Consensus 294 ~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~---nG~skVtwVeH~e~d~~-~vh~lyRpl~~Sg~af 369 (850)
++|.++|+-.|++. +..|....++|.....||++|++.. +++|+|+++-|. |+. .+|. -+++.-..-
T Consensus 121 ~~~~~~i~~~sv~h----p~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~--dPgG~IP~---~lvN~~~~~ 191 (207)
T cd08911 121 ENKLIVIVSKAVQH----PSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD--NPGVNIPS---YITSWVAMS 191 (207)
T ss_pred CCCEEEEEEecCCC----CCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe--CCCCccCH---HHHHHHHHh
Confidence 45677888888874 2234455889999999999999984 678999988885 655 4774 244444444
Q ss_pred HHHHHHHHHH
Q 003071 370 AQKTTMAALR 379 (850)
Q Consensus 370 gar~w~~aLr 379 (850)
+.-.|+.-|+
T Consensus 192 ~~~~~l~~l~ 201 (207)
T cd08911 192 GMPDFLERLR 201 (207)
T ss_pred hccHHHHHHH
Confidence 5555666554
No 58
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.12 E-value=7.2e-05 Score=58.54 Aligned_cols=34 Identities=35% Similarity=0.644 Sum_probs=28.7
Q ss_pred cCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhH
Q 003071 44 ECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCR 81 (850)
Q Consensus 44 ~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak 81 (850)
.+|||+..++.+|+++. |++.+||..||-|.|.|
T Consensus 7 ~nPYPs~~ek~~L~~~t----gls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQT----GLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHH----TS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHhHcc
Confidence 46999999999999999 99999999999999864
No 59
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=97.07 E-value=0.0047 Score=66.23 Aligned_cols=123 Identities=22% Similarity=0.376 Sum_probs=92.6
Q ss_pred cceeEEeeChhhHHHHhcCch---hhhhhCCcceEEeeccCCCcchHHHHHHHhhccc-c---ccCCceeeEEeeceee-
Q 003071 222 RACGLVGLDPTRVAEILKDRP---SWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPT-T---LAPARDFWLLRYTSVL- 293 (850)
Q Consensus 222 R~~glV~m~~~~LVe~lmD~~---~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~S-P---LVp~Re~~fLRyckq~- 293 (850)
|.-++|...+..|.+.|.|.+ +|-..+-..++|+.+.... . + .|+.+ | -+..|||-.++...+.
T Consensus 84 K~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~-~----v---Y~v~~~p~~~pvs~RDfV~~~s~~~~~ 155 (240)
T cd08913 84 KVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDD-A----I---YHVTSPSLSGHGKPQDFVILASRRKPC 155 (240)
T ss_pred EEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCc-E----E---EEEecCCCCCCCCCCeEEEEEEEEecc
Confidence 556789999999999999965 6777778888888877431 1 1 23332 2 5889999999888664
Q ss_pred CCC-cEEEEEeecCCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCCCcccc
Q 003071 294 EDG-SLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEV 358 (850)
Q Consensus 294 ~~G-~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~l 358 (850)
++| .++|+=.|+.. |..|+...|+|.+.+..|++|++.++|.|+||++-|++ +..+|..
T Consensus 156 ~~g~~yii~~~sv~~----P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~d--PG~LP~~ 215 (240)
T cd08913 156 DNGDPYVIALRSVTL----PTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQAT--PGVLPYI 215 (240)
T ss_pred CCCccEEEEEEEeec----CCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeC--CccccHH
Confidence 344 56676666653 33566778999999999999999999999999999998 3366653
No 60
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=96.94 E-value=0.0048 Score=65.93 Aligned_cols=131 Identities=20% Similarity=0.321 Sum_probs=98.4
Q ss_pred eecceeEEeeChhhHHHHhcCch---hhhhhCCcceEEeeccCCCcchHHHHHHHhhccc-cccCCceeeEEeeceeeC-
Q 003071 220 AARACGLVGLDPTRVAEILKDRP---SWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPT-TLAPARDFWLLRYTSVLE- 294 (850)
Q Consensus 220 ASR~~glV~m~~~~LVe~lmD~~---~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~S-PLVp~Re~~fLRyckq~~- 294 (850)
+-|.-..|...+..|.+.|.|.+ +|...|...++|+-++.... +|...-.|- | +..|||-++|=..+..
T Consensus 79 ~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~-----vY~~~~pPw~P-vk~RD~V~~~s~~~~~~ 152 (236)
T cd08914 79 SVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQ-----IYHITCPIVNN-DKPKDLVVLVSRRKPLK 152 (236)
T ss_pred EEEEEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcC-----EEEEecCCCCC-CCCceEEEEEEEEecCC
Confidence 55666688899999999999965 67778888889888774322 344332332 3 4899999987766555
Q ss_pred CCc-EEEEEeecCCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCCCccccchhh
Q 003071 295 DGS-LVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPL 362 (850)
Q Consensus 295 ~G~-waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyRpl 362 (850)
+|. ++|.=.|+.. +..|+.+.|+|.+.+=+|++|++.++|.|+||.+-|+| +..+|..--.+
T Consensus 153 dg~~~~I~~~SVp~----~~~Pp~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~d--Pg~lp~~~~n~ 215 (236)
T cd08914 153 DGNTYVVAVKSVIL----PSVPPSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQIS--ASILPYFAGNL 215 (236)
T ss_pred CCCEEEEEEeeccc----ccCCCCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcC--CccchheEEec
Confidence 885 8888888764 33566678999999999999999999999999999995 46666543333
No 61
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=96.87 E-value=0.00083 Score=70.00 Aligned_cols=62 Identities=34% Similarity=0.627 Sum_probs=57.2
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~ 87 (850)
+.++.++.++..|+..++..|...++|+...+.+|+..+ |+.++.+++||||+|++.|+.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~----~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 152 KPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEET----GLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred ccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhc----CCChhhhhhhcccHHHHHHhhcc
Confidence 456778899999999999999999999999999999999 99999999999999999998544
No 62
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=96.78 E-value=0.0009 Score=77.55 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=53.9
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 83 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~K 83 (850)
..||.|..||..|.+.|..+|+++++|+....+.|+.+| ||+...|..||-|-|.|.+
T Consensus 419 ~~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL----~L~~sTV~NfFmNaRRRsl 476 (558)
T KOG2252|consen 419 QTKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQL----NLELSTVINFFMNARRRSL 476 (558)
T ss_pred cCCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCcHHHHHHHHHhhhhhcc
Confidence 346779999999999999999999999999999999999 9999999999999987754
No 63
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=96.77 E-value=0.016 Score=51.70 Aligned_cols=108 Identities=19% Similarity=0.199 Sum_probs=80.8
Q ss_pred HHHHhh-cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEE
Q 003071 735 ILKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICL 813 (850)
Q Consensus 735 ~~~~l~-~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 813 (850)
.++.++ ++|.+|+.-+ .+=.+.|.|+++.+||+++-+++.+-+.---..+.++.+....+.+...++--..-.-+++
T Consensus 2 ~~~~i~~~~~~~i~~~d--~~g~I~~~N~a~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (113)
T PF00989_consen 2 RYRAILENSPDGIFVID--EDGRILYVNQAAEELLGYSREELIGKSLFDLIHPEDRRELRERLRQALSQGESGESFEVRF 79 (113)
T ss_dssp HHHHHHHCSSSEEEEEE--TTSBEEEECHHHHHHHSS-HHHHTTSBGGGGCSGGGHHHHHHHHHHHHHHCCHECEEEEEE
T ss_pred HHHHHHhcCCceEEEEe--CcCeEEEECHHHHHHHccCHHHHcCCcHHHhcCchhhHHHHHHHHHHHHcCCCceeEEEEE
Confidence 356667 4799999888 6889999999999999999999999888777777666677777777777766555445555
Q ss_pred cc-CCCcEEEeeeEEeEeecCCCceEEEEEecc
Q 003071 814 SS-MGRPISYERAVAWKVLNEEENAHCICFMFI 845 (850)
Q Consensus 814 ss-~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~ 845 (850)
.. .|+.++++ ..+=.+.|.+|+..|.-.+|.
T Consensus 80 ~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 111 (113)
T PF00989_consen 80 RLRDGRPRWVE-VRASPVRDEDGQIIGILVIFR 111 (113)
T ss_dssp EETTSCEEEEE-EEEEEEEETTEEEEEEEEEEE
T ss_pred EecCCcEEEEE-EEEEEEEeCCCCEEEEEEEEE
Confidence 55 88888874 244455688888877766654
No 64
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=96.18 E-value=0.036 Score=49.18 Aligned_cols=104 Identities=13% Similarity=0.182 Sum_probs=81.7
Q ss_pred cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcE
Q 003071 741 HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPI 820 (850)
Q Consensus 741 ~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf 820 (850)
+.|++|+.-+ +|=.+.|+|+++.++|..+-.++++.+...-..+..+++....+.++.+.|-.....-+... .|+..
T Consensus 3 ~~p~~i~v~D--~~~~i~~~N~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (110)
T PF08448_consen 3 SSPDGIFVID--PDGRIVYANQAAAELFGVSPEELIGRSLFDLLPPEDREEFQAALRRALAGGEPVFFEEILLR-DGEER 79 (110)
T ss_dssp HCSSEEEEEE--TTSBEEEE-HHHHHHHTSTHHHHTTSBHHHHSCCGCHHHHHHHHHHHHHHTSEEEEEEEECT-TSCEE
T ss_pred CCCceeEEEC--CCCEEEEEHHHHHHHhCCCHHHHhhccchhccccchhhhhHHHHHHhhccCceEEEEEEEee-cCCcE
Confidence 3677777774 47789999999999999999999999999877777999999999999999876554433333 56665
Q ss_pred EEeeeEEeEeecCCCceEEEEEeccccc
Q 003071 821 SYERAVAWKVLNEEENAHCICFMFINWS 848 (850)
Q Consensus 821 ~i~~a~vW~l~d~~g~~~gqAa~F~~W~ 848 (850)
++ +..+=-+.|++|+..|..+++.|-+
T Consensus 80 ~~-~~~~~Pi~~~~g~~~g~~~~~~DiT 106 (110)
T PF08448_consen 80 WF-EVSISPIFDEDGEVVGVLVIIRDIT 106 (110)
T ss_dssp EE-EEEEEEEECTTTCEEEEEEEEEEEC
T ss_pred EE-EEEEEEeEcCCCCEEEEEEEEEECc
Confidence 55 4456667799999999888876643
No 65
>PRK13557 histidine kinase; Provisional
Probab=95.99 E-value=0.047 Score=62.77 Aligned_cols=112 Identities=10% Similarity=-0.001 Sum_probs=80.6
Q ss_pred hHHHHHhhc-CCCeEeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCe
Q 003071 733 ESILKTLWH-HSDAVLCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSG 810 (850)
Q Consensus 733 ~~~~~~l~~-ap~avl~h~~~-~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 810 (850)
...++.+.+ .|.+|+-.+.. .|-.+.|+|+++.++|+|+.+|+.+.+...-..+...++....+.++...|-.....-
T Consensus 29 ~~~~~~~~~~~~~~i~v~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (540)
T PRK13557 29 SDIFFAAVETTRMPMIVTDPNQPDNPIVFANRAFLEMTGYAAEEIIGNNCRFLQGPETDRATVAEVRDAIAERREIATEI 108 (540)
T ss_pred hHHHHHHHHhCcCcEEEEcCCCCCCCEEEEcHHHHHHhCCCHHHhcCCChHhhcCCCCCHHHHHHHHHHHHcCCCceEEE
Confidence 345666664 78888887754 4778999999999999999999999998766655554555555555555554333333
Q ss_pred eEEccCCCcEEEeeeEEeEeecCCCceEEEEEecc
Q 003071 811 ICLSSMGRPISYERAVAWKVLNEEENAHCICFMFI 845 (850)
Q Consensus 811 vRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~ 845 (850)
.+..+.|+.+++. ..+-.+.|++|...|...+..
T Consensus 109 ~~~~~~G~~~~~~-~~~~~i~~~~g~~~~~~~~~~ 142 (540)
T PRK13557 109 LNYRKDGSSFWNA-LFVSPVYNDAGDLVYFFGSQL 142 (540)
T ss_pred EEEeCCCCEEEEE-EEEEEeECCCCCEEEEEEEec
Confidence 4567899999875 455668899998888766554
No 66
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=95.20 E-value=0.015 Score=73.40 Aligned_cols=63 Identities=21% Similarity=0.311 Sum_probs=57.3
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 88 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~~ 88 (850)
..+.+|++++..|+..+...|....+|.....+.|...+ +++++.|.+||||-|.|.|+..++
T Consensus 902 ~r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~----~~~~~~i~vw~qna~~~s~k~~~n 964 (1406)
T KOG1146|consen 902 GRRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPI----GLPKRVIQVWFQNARAKSKKAKLN 964 (1406)
T ss_pred hhhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccc----cCCcchhHHhhhhhhhhhhhhhhc
Confidence 346778999999999999999999999999999999999 999999999999999999986553
No 67
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=95.15 E-value=1.4 Score=46.18 Aligned_cols=65 Identities=22% Similarity=0.469 Sum_probs=44.6
Q ss_pred HHHhhhccCCCCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--
Q 003071 412 RGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE-- 489 (850)
Q Consensus 412 ~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~lf~FLRd-- 489 (850)
..|..-+ ...++|..... .++|+|..++.. .+.+...++...++.+||+.+|++|.|
T Consensus 13 ~~~~~~~--~~~~~W~~~~~--~~gi~iy~r~~~-----------------~~~~~~~k~~~~~~~~s~e~~~~~l~D~~ 71 (222)
T cd08871 13 EEFKKLC--DSTDGWKLKYN--KNNVKVWTKNPE-----------------NSSIKMIKVSAIFPDVPAETLYDVLHDPE 71 (222)
T ss_pred HHHHHHh--cCCCCcEEEEc--CCCeEEEEeeCC-----------------CCceEEEEEEEEeCCCCHHHHHHHHHChh
Confidence 3444444 23468997642 467999887764 123444555565657999999999998
Q ss_pred hchhhccc
Q 003071 490 HRSEWADS 497 (850)
Q Consensus 490 ~R~eWd~l 497 (850)
.|.+||..
T Consensus 72 ~r~~Wd~~ 79 (222)
T cd08871 72 YRKTWDSN 79 (222)
T ss_pred hhhhhhhh
Confidence 89999974
No 68
>PRK13559 hypothetical protein; Provisional
Probab=94.41 E-value=0.26 Score=54.34 Aligned_cols=113 Identities=10% Similarity=-0.037 Sum_probs=78.6
Q ss_pred hHHHHHhh-cCCCeEeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCe
Q 003071 733 ESILKTLW-HHSDAVLCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSG 810 (850)
Q Consensus 733 ~~~~~~l~-~ap~avl~h~~~-~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 810 (850)
...++.++ +.|.+|+..+.+ .+-.+.|.|.++.++|+++.+++.+.+.+.-..+....+....+..+.+.|-.....-
T Consensus 42 ~~~~~~~~e~~~~~i~i~D~~~~~g~i~~~N~a~~~l~G~~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 121 (361)
T PRK13559 42 GRLFEQAMEQTRMAMCITDPHQPDLPIVLANQAFLDLTGYAAEEVVGRNCRFLQGAATDPIAVAKIRAAIAAEREIVVEL 121 (361)
T ss_pred hhHHHHHHHhCCCcEEEecCCCCCCcEEEEchHHHHHhCCCHHHHcCCChhhhcCCCCCHHHHHHHHHHhccCCceEEEE
Confidence 45566677 479999988865 4678999999999999999999999887654444444444555566666655444344
Q ss_pred eEEccCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 811 ICLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 811 vRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
....+.|+.|+++- .+=-+.|++|.+.|...++.+
T Consensus 122 ~~~~~dG~~~~~~~-~~~~i~d~~G~~~~~v~~~~D 156 (361)
T PRK13559 122 LNYRKDGEPFWNAL-HLGPVYGEDGRLLYFFGSQWD 156 (361)
T ss_pred EEEcCCCCEEEEEE-EEEEEEcCCCCEEEeeeeeee
Confidence 55678888887643 222356888888776665543
No 69
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=93.98 E-value=4.4 Score=42.09 Aligned_cols=57 Identities=23% Similarity=0.468 Sum_probs=42.8
Q ss_pred CCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhhhchhhccc
Q 003071 422 TDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADS 497 (850)
Q Consensus 422 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~lf~FLRd~R~eWd~l 497 (850)
..++|.... ..++|+|.+|+..+ + ..+.--++.+-+ +.+|+.||+.|.|.|.+||..
T Consensus 17 ~~~~W~~~~--~~~gi~I~~k~~~~---~-------------~~l~~~K~~~~v-~a~~~~v~~~l~d~r~~Wd~~ 73 (197)
T cd08869 17 KSKGWVSVS--SSDHVELAFKKVDD---G-------------HPLRLWRASTEV-EAPPEEVLQRILRERHLWDDD 73 (197)
T ss_pred ccCCceEEe--cCCcEEEEEEeCCC---C-------------CcEEEEEEEEEe-CCCHHHHHHHHHHHHhccchh
Confidence 468998654 35699999988741 1 124445777888 799999999999999999964
No 70
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=93.57 E-value=3.3 Score=43.65 Aligned_cols=174 Identities=16% Similarity=0.269 Sum_probs=102.4
Q ss_pred CCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhccccc
Q 003071 422 TDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADSSI 499 (850)
Q Consensus 422 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l~~ 499 (850)
..++|.... ..+++.|..+++.+ .. |=+ .++..-+ |.+|+.||+||.+ +|.+||..
T Consensus 20 ~~~gWk~~k--~~~~~~v~~k~~~~--~~-------------gkl--~k~egvi-~~~~e~v~~~l~~~e~r~~Wd~~-- 77 (204)
T cd08904 20 DTSGWKVVK--TSKKITVSWKPSRK--YH-------------GNL--YRVEGII-PESPAKLIQFMYQPEHRIKWDKS-- 77 (204)
T ss_pred cccCCeEEe--cCCceEEEEEEcCC--CC-------------ceE--EEEEEEe-cCCHHHHHHHHhccchhhhhccc--
Confidence 348998873 34889999988752 11 212 2445566 8999999999997 99999963
Q ss_pred chhhHhhhhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEeeccccccccCCCCCceEEEeeccCCCCCCCCcee
Q 003071 500 DAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCA 579 (850)
Q Consensus 500 ~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~~~~De~~~G~~s 579 (850)
+.+ .+.+-+| +...+|...+..+.. -.-+-+||.+.+|-.--.+ - | .
T Consensus 78 -------~~~--------------~~iie~I----d~~T~I~~~~~~~~~---~~~vspRDfV~vr~~~r~~--~-~--~ 124 (204)
T cd08904 78 -------LQV--------------YKMLQRI----DSDTFICHTITQSFA---MGSISPRDFVDLVHIKRYE--G-N--M 124 (204)
T ss_pred -------ccc--------------eeeEEEe----CCCcEEEEEeccccc---CCcccCceEEEEEEEEEeC--C-C--E
Confidence 111 2344444 555567766653311 1125568888887632223 1 2 2
Q ss_pred EEE-EeeccCC----CCCCC--CccCCccEEecCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCcceEEEe
Q 003071 580 ELV-FAPIDAS----FSDDA--PIIPSGFRIIPLDSGKDTPSPNRTLDLASALEVGPTGNKASGDSSTQCGSTKSVITIA 652 (850)
Q Consensus 580 ~vV-yAPvD~~----ds~~v--~LLPSGF~IlP~~~~~dg~~~~~~ldlas~l~~g~~~~~~~g~~~~~~~~~gslLTva 652 (850)
+++ +.-|+-+ .+.+| -..|+||.|.|+. + + .++|.||.-
T Consensus 125 ~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~--------------------~--------~------p~~t~l~~~ 170 (204)
T cd08904 125 NIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLP--------------------E--------N------PAYSKLVMF 170 (204)
T ss_pred EEEEEEecccCCCCCCCCcEEEeeeccEEEEEECC--------------------C--------C------CCceEEEEE
Confidence 333 4434433 34454 3789999999941 0 0 246899999
Q ss_pred ehhhccc-cchhhHHhhhhhhhhHHHHHHHHHHHHc
Q 003071 653 FQFAFEM-HLQENVASMARQYVRGIIASVQRVALAL 687 (850)
Q Consensus 653 FQ~l~~~-~~~~sva~~~~~~v~~v~~tvqri~~AL 687 (850)
+|+=... .|..-|..+..+ ++++.....+.||
T Consensus 171 ~~~DlkG~lP~~vv~~~~~~---~~~~f~~~~~~~~ 203 (204)
T cd08904 171 VQPELRGNLSRSVIEKTMPT---NLVNLILDAKDGI 203 (204)
T ss_pred EEeCCCCCCCHHHHHHHhHH---HHHHHHHHHHHhc
Confidence 9966654 355444433222 3445555555554
No 71
>TIGR00229 sensory_box PAS domain S-box. The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator.
Probab=93.33 E-value=1.2 Score=36.64 Aligned_cols=107 Identities=9% Similarity=0.091 Sum_probs=65.6
Q ss_pred HHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEE
Q 003071 735 ILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICL 813 (850)
Q Consensus 735 ~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 813 (850)
.++.+++ .|.+++..+. +-.+.|.|.++.++|+++..++.+.+......+.........+.++.+.+......-+++
T Consensus 4 ~~~~~~~~~~~~~~~~d~--~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (124)
T TIGR00229 4 RYRAIFESSPDAIIVIDL--EGNILYVNPAFEEIFGYSAEELIGRNVLELIPEEDREEVRERIERLLEGEREPVSEERRV 81 (124)
T ss_pred HHHHHHhhCCceEEEEcC--CCcEEEEchHHHHHhCCChHHhcCcchhhhcChhhhHHHHHHHHHHHcCCCCCcceEeee
Confidence 3455664 5777776654 567999999999999999999988777665555544444445555555332222223343
Q ss_pred -ccCCCcEEEeeeEEeEeecCCCceEEEEEecc
Q 003071 814 -SSMGRPISYERAVAWKVLNEEENAHCICFMFI 845 (850)
Q Consensus 814 -ss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~ 845 (850)
...|+.+++.- .+-.+. ++|...|...++.
T Consensus 82 ~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~ 112 (124)
T TIGR00229 82 RRKDGSEIWVEV-SVSPIR-TNGGELGVVGIVR 112 (124)
T ss_pred EcCCCCEEEEEE-EEeehh-hCCCeeEEEEEee
Confidence 56666655532 222233 5677676665554
No 72
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=93.31 E-value=0.045 Score=61.28 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=49.0
Q ss_pred CCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHH
Q 003071 23 DNGKYVRYTPEQVEALERLYHE---CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (850)
Q Consensus 23 ~rr~R~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 84 (850)
..|++..+.......|+.+..+ .|||+...+..|++++ ||+..||..||-|.|-|..+
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~T----GLs~~Qv~NWFINaR~R~w~ 299 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQT----GLSRPQVSNWFINARVRLWK 299 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhc----CCCcccCCchhhhcccccCC
Confidence 3455667889999999987554 4899999999999999 99999999999999977554
No 73
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=92.75 E-value=9.4 Score=40.40 Aligned_cols=58 Identities=24% Similarity=0.385 Sum_probs=42.4
Q ss_pred CCCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhhhchhhccc
Q 003071 421 FTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADS 497 (850)
Q Consensus 421 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~lf~FLRd~R~eWd~l 497 (850)
....+|.... ..++|.|.++|..+ + - |--.+.| |+=.+.+|.+.|+|.|+| |..||..
T Consensus 24 ek~kgW~~~~--~~~~vev~~kk~~d---~--------~--~l~lwk~---s~ei~~~p~~vl~rvL~d-R~~WD~~ 81 (205)
T cd08907 24 ERFKGWHSAP--GPDNTELACKKVGD---G--------H--PLRLWKV---STEVEAPPSVVLQRVLRE-RHLWDED 81 (205)
T ss_pred hccCCceeec--CCCCcEEEEEeCCC---C--------C--ceEEEEE---EEEecCCCHHHHHHHhhc-hhhhhHH
Confidence 5567998774 36789999998752 2 1 2234444 455678999999999999 9999963
No 74
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=92.42 E-value=0.66 Score=57.12 Aligned_cols=110 Identities=12% Similarity=0.065 Sum_probs=80.6
Q ss_pred HHHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeE
Q 003071 734 SILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC 812 (850)
Q Consensus 734 ~~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 812 (850)
..++.+++ .|.+|+..+. +=.++|.|+++.++|+++.+++.+.+..--..+.....-.....++.+.|-...+.-..
T Consensus 155 ~~l~~il~~~~~~i~~~D~--~g~i~~~N~a~~~l~G~~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 232 (779)
T PRK11091 155 SLLRSFLDASPDLVYYRNE--DGEFSGCNRAMELLTGKSEKQLIGLTPKDVYSPEAAEKVIETDEKVFRHNVSLTYEQWL 232 (779)
T ss_pred HHHHHHHhcCcceEEEECC--CCcEEeEcHHHHHHhCcCHHHHcCCChHHhCCHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 34555664 7999998875 67899999999999999999999987655554444444444455677777665555555
Q ss_pred EccCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 813 LSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 813 iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
..+.|+.++++ ..+..+.|++|...|..+++.+
T Consensus 233 ~~~~G~~~~~~-~~~~pi~~~~g~~~g~v~~~~D 265 (779)
T PRK11091 233 DYPDGRKACFE-LRKVPFYDRVGKRHGLMGFGRD 265 (779)
T ss_pred EcCCCCEEEEE-EEeeeEEcCCCCEEEEEEEEee
Confidence 66788888775 4566778999999988777754
No 75
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=92.17 E-value=6.3 Score=41.18 Aligned_cols=72 Identities=19% Similarity=0.354 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHH
Q 003071 403 LRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAI 482 (850)
Q Consensus 403 l~kLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~ 482 (850)
|++.|. ++..|...+.. .++|.... ..++|+|..|... ++.+++-++-..+ +.|+..
T Consensus 4 ~~~~~~-~~~~~~~~l~~--~~~W~~~~--~~~~i~v~~r~~~-----------------~~~~~~~k~e~~i-~~~~~~ 60 (215)
T cd08877 4 IRQEAT-IMQENLKDLDE--SDGWTLQK--ESEGIRVYYKFEP-----------------DGSLLSLRMEGEI-DGPLFN 60 (215)
T ss_pred HHHHHH-HHHHHHhcccC--CCCcEEec--cCCCeEEEEEeCC-----------------CCCEEEEEEEEEe-cCChhH
Confidence 333443 44556666655 77899775 3579999998874 2348999999999 799999
Q ss_pred HHHHHhh--hchhhccc
Q 003071 483 LLRFLRE--HRSEWADS 497 (850)
Q Consensus 483 lf~FLRd--~R~eWd~l 497 (850)
+++.|+| .+.+|+..
T Consensus 61 ~~~vl~d~~~~~~W~p~ 77 (215)
T cd08877 61 LLALLNEVELYKTWVPF 77 (215)
T ss_pred eEEEEehhhhHhhhccc
Confidence 9999998 89999975
No 76
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=91.90 E-value=0.21 Score=47.93 Aligned_cols=94 Identities=13% Similarity=0.182 Sum_probs=54.5
Q ss_pred CCcccCCHHHHH-HHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHHHHHHHHHhHHHHHhhH
Q 003071 25 GKYVRYTPEQVE-ALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNK 103 (850)
Q Consensus 25 r~R~r~T~~Ql~-~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~~~~l~~~n~~l~a~n~ 103 (850)
++|.+||.++.. .+...+... ....++|+++ |+++.++..|-+ +.+....................
T Consensus 8 ~~rr~ys~EfK~~aV~~~~~~g-----~sv~evA~e~----gIs~~tl~~W~r----~y~~~~~~~~~~~~~~~~~~~~~ 74 (121)
T PRK09413 8 EKRRRRTTQEKIAIVQQSFEPG-----MTVSLVARQH----GVAASQLFLWRK----QYQEGSLTAVAAGEQVVPASELA 74 (121)
T ss_pred CCCCCCCHHHHHHHHHHHHcCC-----CCHHHHHHHH----CcCHHHHHHHHH----HHhhcccccccccccCCchhHHH
Confidence 445678887654 444444322 3466789999 999999999943 22221100000000001111223
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 003071 104 LLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (850)
Q Consensus 104 ~l~ee~~~l~~~~~~L~~En~~Lk~el~ 131 (850)
.+++++.+|++++.+|+.||.-||.-..
T Consensus 75 ~~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 75 AAMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888889999998887653
No 77
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=91.78 E-value=0.65 Score=52.44 Aligned_cols=110 Identities=12% Similarity=-0.030 Sum_probs=71.6
Q ss_pred HHHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeE
Q 003071 734 SILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC 812 (850)
Q Consensus 734 ~~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 812 (850)
+.++.+.+ +|++|+.++. +..+.|.|.++.++|+++-+++.+.+...-..+....+....+.+....|-.....-.+
T Consensus 4 ~~~~~i~~~~~~~i~~~d~--~g~~~~~N~~~~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (494)
T TIGR02938 4 EAYRQTVDQAPLAISITDL--KANILYANDAFTRITGYTKEEIIGKNESVLSNHTTPPEVYQALWGSLAEQKPWAGKLLN 81 (494)
T ss_pred HHHHHHHHhCCceEEEECC--CCcEEEEchhheeecCCCHHHHhCCCchhhcCCCCCHHHHHHHHHHHHhCCcccceeec
Confidence 45566674 7999988886 56899999999999999999999876443333333333233333333333222223344
Q ss_pred EccCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 813 LSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 813 iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
..+.|+.++++ ..+-.+.|++|...|.-.++.+
T Consensus 82 ~~~~g~~~~~~-~~~~~~~~~~g~~~~~~~~~~D 114 (494)
T TIGR02938 82 RRKDGELYLAE-LTVAPVLNEAGETTHFLGMHRD 114 (494)
T ss_pred cCCCccchhhh-eeeEEEECCCCCEEEEEEehhh
Confidence 56788888764 3444667889988876666543
No 78
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=91.35 E-value=3.1 Score=32.03 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=56.1
Q ss_pred CCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEE-ccCCCcEE
Q 003071 743 SDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICL-SSMGRPIS 821 (850)
Q Consensus 743 p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi-ss~Grrf~ 821 (850)
|.+++..+. +-.+.|.|.++.++|+++..++.+.+...-..+..+......+.++.+.+-...+ -+++ ...|...+
T Consensus 2 ~~~i~~~d~--~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (103)
T cd00130 2 PDGVIVLDL--DGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRERLENLLSGGEPVTL-EVRLRRKDGSVIW 78 (103)
T ss_pred CceEEEECC--CCcEEEECHHHHHHhCCCHHHHcCccHHHhcCCccchHHHHHHHHHHhcCcCeEE-EEEEEccCCCEEE
Confidence 445555543 4568899999999999999999887765555555554444555555543222211 2222 23355554
Q ss_pred EeeeEEeEeecCCCceEEEEEec
Q 003071 822 YERAVAWKVLNEEENAHCICFMF 844 (850)
Q Consensus 822 i~~a~vW~l~d~~g~~~gqAa~F 844 (850)
+. ..+-.+.+.+|...+...++
T Consensus 79 ~~-~~~~~~~~~~~~~~~~~~~~ 100 (103)
T cd00130 79 VL-VSLTPIRDEGGEVIGLLGVV 100 (103)
T ss_pred EE-EEEEEEecCCCCEEEEEEEE
Confidence 43 22333445666666655444
No 79
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=90.57 E-value=1.4 Score=46.34 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=39.3
Q ss_pred CCCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhccc
Q 003071 421 FTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADS 497 (850)
Q Consensus 421 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l 497 (850)
-..++|. +. ...++|+|.++... + . .. .+++. +-+ ++||+.|+++|.| .|.+||..
T Consensus 19 ~~~~gW~-l~-~~~~gI~Vy~k~~~----~-~---------~~-~~~ge---~~v-~as~~~v~~ll~D~~~r~~Wd~~ 76 (205)
T cd08874 19 QATAGWS-YQ-CLEKDVVIYYKVFN----G-T---------YH-GFLGA---GVI-KAPLATVWKAVKDPRTRFLYDTM 76 (205)
T ss_pred hccCCcE-EE-ecCCCEEEEEecCC----C-C---------cc-eEEEE---EEE-cCCHHHHHHHHhCcchhhhhHHh
Confidence 4677994 43 34578999987642 1 1 12 35543 345 8999999999998 89999964
No 80
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=90.52 E-value=0.057 Score=45.44 Aligned_cols=42 Identities=19% Similarity=0.414 Sum_probs=31.0
Q ss_pred HHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccch
Q 003071 34 QVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRR 79 (850)
Q Consensus 34 Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRR 79 (850)
-++.|++.|...+++.......|+.+. +|+..||+.||--|+
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS----~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKS----RMSYQQVRDWFAERM 50 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHT----T--HHHHHHHHHHHS
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHH----CCCHHHHHHHHHHhc
Confidence 467799999999999999999999999 999999999996443
No 81
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=90.25 E-value=1.3 Score=37.86 Aligned_cols=45 Identities=27% Similarity=0.413 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 003071 79 RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYEN 123 (850)
Q Consensus 79 Rak~Krr~~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En 123 (850)
++|.|++.....++.....|..+|..|++++..+..+...|..||
T Consensus 19 ~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 19 RSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 566666666667777777777777777766666666666666554
No 82
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=89.47 E-value=0.52 Score=49.69 Aligned_cols=110 Identities=15% Similarity=0.094 Sum_probs=80.3
Q ss_pred hhhhhhCC--cceEEeeccCCCcchHHHHHHHhhccccccCCceeeEEee-ceeeCC-CcEEEEEeecCCCCCCCCCC-C
Q 003071 242 PSWYRDCR--SVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRY-TSVLED-GSLVVCERSLNNTQNGPSMP-Q 316 (850)
Q Consensus 242 ~~W~~~f~--~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRy-ckq~~~-G~waVvDvSld~~~~~~~~~-~ 316 (850)
.+|...+- .+++++....+.++...+.|.+..+|-| +..|+|..+.. +...+. ..++|+..+++.. ..| .
T Consensus 66 ~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~----~~p~~ 140 (208)
T cd08864 66 KEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYKFPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPP----LVESL 140 (208)
T ss_pred hhchhhhccceeEEeeecCCCccceEEEEEEEEECCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCC----cCCcc
Confidence 47777777 6888888776655555667777788888 89999999999 666652 6778999998743 122 3
Q ss_pred CCCccceeecCcceEEeeCCC---CceEEEEEEeeeccCC-Cccc
Q 003071 317 APHFVRAEMLPSGYLIRPCEG---GGSIIHIVDHMDLEPW-SVPE 357 (850)
Q Consensus 317 ~~~~~r~rrlPSGclIq~~~n---G~skVtwVeH~e~d~~-~vh~ 357 (850)
...++|.+ -=||..|+..|. +-..|+|+==...|+. .||.
T Consensus 141 ~~~~Vr~~-y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~ 184 (208)
T cd08864 141 YENAVLGR-YASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPR 184 (208)
T ss_pred CCCcEEEE-EEEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcH
Confidence 34788888 679999998875 4789999983344555 4664
No 83
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=89.28 E-value=1.7 Score=49.86 Aligned_cols=94 Identities=20% Similarity=0.275 Sum_probs=68.8
Q ss_pred HHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccC-HHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEE
Q 003071 736 LKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETT-LVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICL 813 (850)
Q Consensus 736 ~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~-w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 813 (850)
++.+++ +|++|+..+. +=.++|+|.++.+||+++ -+++++.+...-.. ....+...++..+.+.|....|...-.
T Consensus 254 ~~~l~e~~~d~I~v~D~--~G~I~~~N~a~~~l~G~~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~ 330 (442)
T TIGR02040 254 LARLYHEAPDAIVFSDA--DGTIRGANEAFLELTDSSSLEAVRGRTLDRWLG-RGGVDLRVLLSNVRRTGQVRLYATTLT 330 (442)
T ss_pred HHHHHHhCCceEEEEcC--CCcEEehhHHHHHHhCCCChHHHcCCCHHHHhC-CCcccHHHHHHHHhhcCceEEEEEEEE
Confidence 455664 7999998876 457999999999999997 57899987542221 223445677788888998888887878
Q ss_pred ccCCCcEEEeeeEEeEeecCC
Q 003071 814 SSMGRPISYERAVAWKVLNEE 834 (850)
Q Consensus 814 ss~Grrf~i~~a~vW~l~d~~ 834 (850)
.+.|+.++++ +-...+.++
T Consensus 331 ~~~G~~~~ve--~s~~~i~~~ 349 (442)
T TIGR02040 331 GEFGAQTEVE--ISAAWVDQG 349 (442)
T ss_pred cCCCCEEEEE--EEEEEeccC
Confidence 9999999996 333444433
No 84
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=89.11 E-value=7.3 Score=38.67 Aligned_cols=126 Identities=20% Similarity=0.274 Sum_probs=73.6
Q ss_pred CCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhcccccch
Q 003071 424 EGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADSSIDA 501 (850)
Q Consensus 424 ~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l~~~~ 501 (850)
++|..+.. .++|+|..++..+ +.+...++..-+ +.|+..|+++|.| .|.+||...
T Consensus 15 ~~W~~~~~--~~~v~vy~~~~~~-----------------~~~~~~k~~~~i-~~~~~~v~~~l~d~~~~~~w~~~~--- 71 (193)
T cd00177 15 EGWKLVKE--KDGVKIYTKPYED-----------------SGLKLLKAEGVI-PASPEQVFELLMDIDLRKKWDKNF--- 71 (193)
T ss_pred CCeEEEEE--CCcEEEEEecCCC-----------------CCceeEEEEEEE-CCCHHHHHHHHhCCchhhchhhcc---
Confidence 58998753 3488888776641 123344556667 6899999999996 899999531
Q ss_pred hhHhhhhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEeeccccccccCCCCCceEEEeeccCCCCCCCCceeEE
Q 003071 502 YSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCAEL 581 (850)
Q Consensus 502 ~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~~~~De~~~G~~s~v 581 (850)
. . ..++..+.. +..|.-.+....- .+-.|+++++..+ ..++ .|. -++
T Consensus 72 -~-----~--------------~~vl~~~~~----~~~i~~~~~~~p~-----p~~~Rdfv~~~~~-~~~~--~~~-~~~ 118 (193)
T cd00177 72 -E-----E--------------FEVIEEIDE----HTDIIYYKTKPPW-----PVSPRDFVYLRRR-RKLD--DGT-YVI 118 (193)
T ss_pred -e-----E--------------EEEEEEeCC----CeEEEEEEeeCCC-----ccCCccEEEEEEE-EEcC--CCe-EEE
Confidence 1 0 233333322 2233333333321 1556889998875 3443 332 467
Q ss_pred EEeeccCCC----CCCC--CccCCccEEec
Q 003071 582 VFAPIDASF----SDDA--PIIPSGFRIIP 605 (850)
Q Consensus 582 VyAPvD~~d----s~~v--~LLPSGF~IlP 605 (850)
+..+||... ++.| .++++||.|-|
T Consensus 119 ~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~ 148 (193)
T cd00177 119 VSKSVDHDSHPKEKGYVRAEIKLSGWIIEP 148 (193)
T ss_pred EEeecCCCCCCCCCCcEEEEEEccEEEEEE
Confidence 777777641 1222 25567777777
No 85
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=88.94 E-value=3.5 Score=44.11 Aligned_cols=56 Identities=30% Similarity=0.281 Sum_probs=30.6
Q ss_pred ccchhHHHHHH-----HHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 003071 76 QNRRCREKQRK-----EASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (850)
Q Consensus 76 QNRRak~Krr~-----~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~ 131 (850)
||-|-|.|.|. +-..+..+|.+|..+|+.|++.++.|-.+-++|+.+...++++|.
T Consensus 82 QtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~ 142 (292)
T KOG4005|consen 82 QTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELA 142 (292)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 55565555432 223444556666666666666666655555555555555555443
No 86
>PRK13560 hypothetical protein; Provisional
Probab=88.80 E-value=2.3 Score=51.65 Aligned_cols=110 Identities=7% Similarity=-0.056 Sum_probs=72.4
Q ss_pred HHHHhh-cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEE
Q 003071 735 ILKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICL 813 (850)
Q Consensus 735 ~~~~l~-~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 813 (850)
.++.++ +.|++|+..+. |=.+.|.|+++.++|+|+-+|+.+.+..--..+...+..+.........|-...+.-...
T Consensus 205 ~l~~l~e~~~~~i~~~d~--~g~i~~~N~~~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 282 (807)
T PRK13560 205 FLQQLLDNIADPAFWKDE--DAKVFGCNDAACLACGFRREEIIGMSIHDFAPAQPADDYQEADAAKFDADGSQIIEAEFQ 282 (807)
T ss_pred HHHHHHhhCCCeEEEEcC--CCCEEEEhHHHHHHhCCCHHHHcCCcchhcCCcchhHHHHHHHHHHhccCCceEEEEEEE
Confidence 344555 47888887764 568999999999999999999999887665544433333344444444443334444556
Q ss_pred ccCCCcEEEeee-EEeEeecCCCceEEEEEeccc
Q 003071 814 SSMGRPISYERA-VAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 814 ss~Grrf~i~~a-~vW~l~d~~g~~~gqAa~F~~ 846 (850)
.+.|+.++++-. ..-.+.|++|...|...++.+
T Consensus 283 ~~dG~~~~~~~~~~~~~~~~~~g~~~g~~~~~~D 316 (807)
T PRK13560 283 NKDGRTRPVDVIFNHAEFDDKENHCAGLVGAITD 316 (807)
T ss_pred cCCCCEEEEEEEecceEEEcCCCCEEEEEEEEEe
Confidence 788988865321 122345888888877666543
No 87
>PRK13558 bacterio-opsin activator; Provisional
Probab=88.78 E-value=2.7 Score=50.87 Aligned_cols=109 Identities=5% Similarity=-0.087 Sum_probs=77.9
Q ss_pred HHhh-cCCCeEeecCC-CCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEc
Q 003071 737 KTLW-HHSDAVLCCSL-KALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLS 814 (850)
Q Consensus 737 ~~l~-~ap~avl~h~~-~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRis 814 (850)
+.++ ++|..|...+. .++..+.|.|.+..++|+++-+++.+.+...-..+..+.++...+.+..+.|-.....-....
T Consensus 151 ~~~~~~~~~gi~~~d~~~~dg~i~~~N~~~~~l~G~~~eel~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 230 (665)
T PRK13558 151 ERALDEAPVGITIADATLPDEPLIYINDAFERITGYSPDEVLGRNCRFLQGEDTNEERVAELREAIDEERPTSVELRNYR 230 (665)
T ss_pred HHHHhcCCccEEEEcCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHHHhcCCCccHHHHHHHHHHHhcCCCeEEEEEEEC
Confidence 4455 47888888775 367899999999999999999999998877666666666666666666666543333333456
Q ss_pred cCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 815 SMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 815 s~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
+.|..++++- .+=.+.|++|...|...++.+
T Consensus 231 ~dG~~~~~~~-~~~pi~d~~G~~~~~vgi~~D 261 (665)
T PRK13558 231 KDGSTFWNQV-DIAPIRDEDGTVTHYVGFQTD 261 (665)
T ss_pred CCCCEEEEEE-EEEEEECCCCCEEEEEEEEEe
Confidence 7888877643 333567889998887766654
No 88
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=87.84 E-value=1.1 Score=47.45 Aligned_cols=111 Identities=25% Similarity=0.389 Sum_probs=83.7
Q ss_pred eeChhhHHHHhcC---chhhhhhCCcceEEeecc-CCCcchHHHHHHHhhccccccCCceeeEEeeceeeCCCcEEEEEe
Q 003071 228 GLDPTRVAEILKD---RPSWYRDCRSVEVVNVLP-TGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCER 303 (850)
Q Consensus 228 ~m~~~~LVe~lmD---~~~W~~~f~~~~~l~~~~-~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvDv 303 (850)
.+.|..+-++|+| +.+|=.+--.+++|+..+ +| -+++|-+++.|.|+- .||+-++|-.-+.++-.-.||-.
T Consensus 63 Dvtp~~~~Dv~~D~eYRkkWD~~vi~~e~ie~d~~tg----~~vv~w~~kfP~p~~-~RdYV~~Rr~~~~~~k~~~i~s~ 137 (219)
T KOG2761|consen 63 DVTPEIVRDVQWDDEYRKKWDDMVIELETIEEDPVTG----TEVVYWVKKFPFPMS-NRDYVYVRRWWESDEKDYYIVSK 137 (219)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhhhheeeeecCCCC----ceEEEEEEeCCcccC-CccEEEEEEEEecCCceEEEEEe
Confidence 3578899999999 468988888889999887 44 246788889998875 59999998777777777777777
Q ss_pred ecCCCCCCCCCCCCCCccceeecCcceEEe-----eCCCC-ceEEEEEEe
Q 003071 304 SLNNTQNGPSMPQAPHFVRAEMLPSGYLIR-----PCEGG-GSIIHIVDH 347 (850)
Q Consensus 304 Sld~~~~~~~~~~~~~~~r~rrlPSGclIq-----~~~nG-~skVtwVeH 347 (850)
|+.. +..|+...++|..-.=||.+|+ +-++| .|-++|.+|
T Consensus 138 ~v~h----~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~ 183 (219)
T KOG2761|consen 138 SVQH----PSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHN 183 (219)
T ss_pred cccC----CCcCCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEEC
Confidence 7763 3345555678888899999999 55555 355566554
No 89
>PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A.
Probab=87.68 E-value=0.66 Score=38.46 Aligned_cols=40 Identities=15% Similarity=0.256 Sum_probs=30.5
Q ss_pred HHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCcc
Q 003071 735 ILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITL 780 (850)
Q Consensus 735 ~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lps 780 (850)
.++.+++ .|.+|+..+ .+ +++|+|+++.+||+++ ..+.+.
T Consensus 2 ~~~~l~~~~~~~i~i~d--~~-~i~~~N~~~~~l~g~~---~~~~~~ 42 (64)
T PF13188_consen 2 RYRSLFDNSPDGILIID--GG-RIIYVNPAFEELFGYS---LEGEDI 42 (64)
T ss_dssp HHHHHHCCSSSEEEEEE--TS-BEEEE-HHHHHHHCS----HTCCCH
T ss_pred HHHHHHHcCccceEEEE--CC-ChHHhhHHHHHHhCCC---CCCCCH
Confidence 4677885 799999998 33 9999999999999998 545544
No 90
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=87.57 E-value=3.1 Score=47.68 Aligned_cols=84 Identities=19% Similarity=0.192 Sum_probs=62.2
Q ss_pred HHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEE
Q 003071 735 ILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICL 813 (850)
Q Consensus 735 ~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 813 (850)
.++.+++ +|++|+..+. .+-.+.|.|.++.+||+|+.+++++.+..--..+..+......+.+...+|....+ =++.
T Consensus 134 r~~~l~e~~~~~i~~~d~-~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~-~~~~ 211 (442)
T TIGR02040 134 RYRVVLEVSSDAVLLVDM-STGRIVEANSAAAALLGGVGQSLVGRAFPQEFEGRRREELMLTLRNVRATGSAAPV-RILL 211 (442)
T ss_pred HHHHHHhhCCceEEEEEC-CCCEEEEEcHHHHHHhCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCCcce-EEEE
Confidence 4455664 6888887765 24589999999999999999999999877666777777778888888888875433 2444
Q ss_pred ccCCCcE
Q 003071 814 SSMGRPI 820 (850)
Q Consensus 814 ss~Grrf 820 (850)
...|.++
T Consensus 212 ~~~~~~~ 218 (442)
T TIGR02040 212 RRSQKRL 218 (442)
T ss_pred cCCCeEE
Confidence 4445444
No 91
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=86.07 E-value=5.6 Score=39.04 Aligned_cols=38 Identities=16% Similarity=0.238 Sum_probs=26.4
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhH
Q 003071 28 VRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCR 81 (850)
Q Consensus 28 ~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak 81 (850)
.+||.+++..+ .-.+|=+.| -|++...|--|=|.||+-
T Consensus 22 d~lsDd~Lvsm-------------SVReLNr~L---rG~~reEVvrlKQrRRTL 59 (135)
T KOG4196|consen 22 DRLSDDELVSM-------------SVRELNRHL---RGLSREEVVRLKQRRRTL 59 (135)
T ss_pred CCcCHHHHHHh-------------hHHHHHHHh---cCCCHHHHHHHHHHHHHH
Confidence 68999988766 233444444 288888888888877765
No 92
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=85.78 E-value=19 Score=37.41 Aligned_cols=129 Identities=16% Similarity=0.254 Sum_probs=71.4
Q ss_pred CCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHHHHHHh-h--hchhhccccc
Q 003071 423 DEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLR-E--HRSEWADSSI 499 (850)
Q Consensus 423 ~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~lf~FLR-d--~R~eWd~l~~ 499 (850)
..+|.... +..++|.|.+|... + .|-+ .++...+ ++||+.||++|- | .|.+||....
T Consensus 23 ~~~W~l~~-~~~~~i~i~~r~~~----~------------~~~~--~k~~~~i-~~~~~~v~~~l~~d~~~~~~Wd~~~~ 82 (208)
T cd08868 23 DPGWKLEK-NTTWGDVVYSRNVP----G------------VGKV--FRLTGVL-DCPAEFLYNELVLNVESLPSWNPTVL 82 (208)
T ss_pred CCCceEEE-ecCCCCEEEEEEcC----C------------CceE--EEEEEEE-cCCHHHHHHHHHcCccccceecCccc
Confidence 44998764 33348999988864 1 1323 4445667 899999998765 4 8999997421
Q ss_pred chhhHhhhhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEeeccccccccCCCCCceEEEeeccCCCCCCCCcee
Q 003071 500 DAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCA 579 (850)
Q Consensus 500 ~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~~~~De~~~G~~s 579 (850)
..+++-.+ +....|--....... ..-+-+||.+.++-.. .++ +. -
T Consensus 83 -----------------------~~~~i~~~----d~~~~i~y~~~~~~~---~~~vs~RDfV~~r~~~-~~~---~~-~ 127 (208)
T cd08868 83 -----------------------ECKIIQVI----DDNTDISYQVAAEAG---GGLVSPRDFVSLRHWG-IRE---NC-Y 127 (208)
T ss_pred -----------------------ceEEEEEe----cCCcEEEEEEecCcC---CCcccccceEEEEEEE-ecC---Ce-E
Confidence 13444444 222233222221110 0124457888887642 332 32 2
Q ss_pred EEEEeeccCC----CCCC--CCccCCccEEecC
Q 003071 580 ELVFAPIDAS----FSDD--APIIPSGFRIIPL 606 (850)
Q Consensus 580 ~vVyAPvD~~----ds~~--v~LLPSGF~IlP~ 606 (850)
.++...|+-+ .+.+ +..+++||.|-|+
T Consensus 128 ~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~ 160 (208)
T cd08868 128 LSSGVSVEHPAMPPTKNYVRGENGPGCWILRPL 160 (208)
T ss_pred EEEEEeccCCCCCCCCCeEEEeccccEEEEEEC
Confidence 3344445432 2333 4578899999985
No 93
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=85.13 E-value=15 Score=38.98 Aligned_cols=55 Identities=22% Similarity=0.469 Sum_probs=35.5
Q ss_pred CCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhhhchhhccc
Q 003071 424 EGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADS 497 (850)
Q Consensus 424 ~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~lf~FLRd~R~eWd~l 497 (850)
.+|..+. ..+++.+..+|..+ + ..+=--++++=+ +.||..|+..+-+.|.+||..
T Consensus 27 k~w~~~~--~~~~~e~~ykK~~d---~-------------~~lk~~r~~~ei-~~~p~~VL~~vl~~R~~WD~~ 81 (205)
T cd08909 27 KGWISCS--SSDNTELAYKKVGD---G-------------NPLRLWKVSVEV-EAPPSVVLNRVLRERHLWDED 81 (205)
T ss_pred cCCcccC--CcCCeEEEEecCCC---C-------------CceEEEEEEEEe-CCCHHHHHHHHHhhHhhHHhh
Confidence 4677764 35778888887641 1 113344567888 677777655555579999963
No 94
>smart00338 BRLZ basic region leucin zipper.
Probab=83.76 E-value=4.3 Score=34.70 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=21.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 003071 97 KLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (850)
Q Consensus 97 ~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el 130 (850)
.|..+...+..++..|..++..|+.|+..|++++
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555666666666666777777777665
No 95
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=82.93 E-value=66 Score=33.84 Aligned_cols=71 Identities=11% Similarity=0.217 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHHH
Q 003071 405 ALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILL 484 (850)
Q Consensus 405 kLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~lf 484 (850)
+.++-=++.|..-+.. .++|..-. +..++|+|.+++..+ .| .+-+.-+-+ ++||+.||
T Consensus 8 ~~~~~~~~~~~~~l~~--~~~W~l~~-~~~~gi~V~s~~~~~----------------~~--~~fk~~~~v-~~~~~~l~ 65 (209)
T cd08906 8 RQGKEALAVVEQILAQ--EENWKFEK-NNDNGDTVYTLEVPF----------------HG--KTFILKAFM-QCPAELVY 65 (209)
T ss_pred HHHHHHHHHHHHHhhc--ccCCEEEE-ecCCCCEEEEeccCC----------------CC--cEEEEEEEE-cCCHHHHH
Confidence 3444444555554443 35898542 235788998866531 12 333666777 79999998
Q ss_pred H-HHhh--hchhhccc
Q 003071 485 R-FLRE--HRSEWADS 497 (850)
Q Consensus 485 ~-FLRd--~R~eWd~l 497 (850)
+ .|.| .|.+||..
T Consensus 66 ~~ll~D~~~~~~W~~~ 81 (209)
T cd08906 66 QEVILQPEKMVLWNKT 81 (209)
T ss_pred HHHHhChhhccccCcc
Confidence 5 5677 89999964
No 96
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=82.90 E-value=41 Score=35.55 Aligned_cols=54 Identities=13% Similarity=0.305 Sum_probs=37.7
Q ss_pred CccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhhhchhhccc
Q 003071 425 GWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLREHRSEWADS 497 (850)
Q Consensus 425 ~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~lf~FLRd~R~eWd~l 497 (850)
+|..+. ..+.+.++.+|.. ++ +-+.--++++-+ |.+|..|...|-|-|.+||..
T Consensus 28 ~w~~~~--~~~~~el~~~k~~---~g-------------s~l~~~r~~~~i-~a~~~~vl~~lld~~~~Wd~~ 81 (204)
T cd08908 28 GWVSYS--TSEQAELSYKKVS---EG-------------PPLRLWRTTIEV-PAAPEEILKRLLKEQHLWDVD 81 (204)
T ss_pred CCcccC--CCCcEEEEEeccC---CC-------------CCcEEEEEEEEe-CCCHHHHHHHHHhhHHHHHHH
Confidence 677764 3677899998763 12 236667777888 677777776555559999964
No 97
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=82.25 E-value=21 Score=36.53 Aligned_cols=105 Identities=16% Similarity=0.191 Sum_probs=60.7
Q ss_pred eEEEEEeecccccCChHH-HHHHHhh--hchhhcccccchhhHhhhhcCCCCCCCCCCCCcccceEecccccCCCCceEE
Q 003071 465 AVLCAKASMLLQDVPPAI-LLRFLRE--HRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLE 541 (850)
Q Consensus 465 ~Vl~A~tS~wL~pvpp~~-lf~FLRd--~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vs 541 (850)
.+-..++...+ +.+|+. +.++|.| .|.+||.... + .+.+-.+. .++.|.
T Consensus 43 ~~~~~k~~~~v-~~~~~~~~~~~~~d~~~r~~Wd~~~~---------~--------------~~~ie~~~----~~~~i~ 94 (206)
T smart00234 43 PGEASRAVGVV-PMVCADLVEELMDDLRYRPEWDKNVA---------K--------------AETLEVID----NGTVIY 94 (206)
T ss_pred ceEEEEEEEEE-ecChHHHHHHHHhcccchhhCchhcc---------c--------------EEEEEEEC----CCCeEE
Confidence 36677888888 678886 6678887 7999996421 1 23333332 223333
Q ss_pred EEEeeccccccccCCCCCceEEEeeccCCCCCCCCceeEEE-EeeccCC----CCCCC--CccCCccEEecC
Q 003071 542 VIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCAELV-FAPIDAS----FSDDA--PIIPSGFRIIPL 606 (850)
Q Consensus 542 llr~~~~~~~~~~~~~~~~~liLQe~~~~De~~~G~~s~vV-yAPvD~~----ds~~v--~LLPSGF~IlP~ 606 (850)
....+..- .-+-.||..++..+. .+ ..|+ ++| ..-|+-. .+..| .++++||.|-|+
T Consensus 95 ~~~~~~~~----~p~~~RDfv~~r~~~-~~--~~~~--~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~ 157 (206)
T smart00234 95 HYVSKFVA----GPVSPRDFVFVRYWR-EL--VDGS--YAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPL 157 (206)
T ss_pred EEEEeccc----CcCCCCeEEEEEEEE-Ec--CCCc--EEEEEEECCCCCCCCCCCceEEEEeceEEEEEEC
Confidence 33332211 134467888888753 34 2443 333 3345443 23332 589999999995
No 98
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=82.22 E-value=7.2 Score=47.81 Aligned_cols=102 Identities=11% Similarity=0.026 Sum_probs=69.8
Q ss_pred CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccc-cCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcE
Q 003071 742 HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKI-FDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPI 820 (850)
Q Consensus 742 ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~s-ae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf 820 (850)
.|.+|+..+ .+-.++|.|.++.++|+++.+++.+.+...- ..+....+....+.+....+-.....-....+.|+.+
T Consensus 145 ~~~~i~~~d--~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~ 222 (799)
T PRK11359 145 LDRPVIVLD--PERRIVQCNRAFTEMFGYCISEASGMQPDTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLTRTGEKI 222 (799)
T ss_pred CCCcEEEEc--CCCcEEEEChhhHhhhCCCHHHHCCCChHHhcCCCCCcHHHHHHHHHhhccCCCCcceeEEeCCCCCEE
Confidence 566666654 4678999999999999999999999865432 2233334444445555555444333445567889888
Q ss_pred EEeeeEEeEeecCCCceEEEEEeccc
Q 003071 821 SYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 821 ~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
++. ..+-.+.|++|...|...++.+
T Consensus 223 ~~~-~~~~~v~d~~g~~~~~~~~~~D 247 (799)
T PRK11359 223 WIK-ASISPVYDVLAHLQNLVMTFSD 247 (799)
T ss_pred EEE-eeeeeeecCCCceeEEEEEeeh
Confidence 874 4555678889988887777654
No 99
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=81.43 E-value=4.4 Score=44.33 Aligned_cols=91 Identities=14% Similarity=0.116 Sum_probs=63.2
Q ss_pred HHHhh-cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEc
Q 003071 736 LKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLS 814 (850)
Q Consensus 736 ~~~l~-~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRis 814 (850)
.+.+. ..|.+|+..+. +-.++|.|++|.++|+++.+++.+.|..--..+.. .+. ..+.++.+.|-...+..+++.
T Consensus 9 ~~~il~~~~~gi~~~d~--~~~i~~~N~a~~~~~g~~~~~~~g~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~ 84 (348)
T PRK11073 9 AGQILNSLINSILLLDD--DLAIHYANPAAQQLLAQSSRKLFGTPLPELLSYFS-LNI-ELMRESLQAGQGFTDNEVTLV 84 (348)
T ss_pred HHHHHhcCcCeEEEECC--CCeEeeEcHHHHHHhCCCHHHHcCCCHHHHcCcch-hhH-HHHHHHHHcCCcccccceEEE
Confidence 34455 57999998875 67999999999999999999999998765554322 222 233455555544455678888
Q ss_pred cCCCcEEEeeeEEeEeec
Q 003071 815 SMGRPISYERAVAWKVLN 832 (850)
Q Consensus 815 s~Grrf~i~~a~vW~l~d 832 (850)
..|+.++++ +.+..+.
T Consensus 85 ~~g~~~~~~--~~~~~~~ 100 (348)
T PRK11073 85 IDGRSHILS--LTAQRLP 100 (348)
T ss_pred ECCceEEEE--EEEEEcc
Confidence 899888763 3344444
No 100
>PRK09776 putative diguanylate cyclase; Provisional
Probab=80.54 E-value=7.3 Score=49.63 Aligned_cols=109 Identities=9% Similarity=0.018 Sum_probs=75.3
Q ss_pred hHHHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccC-CCe
Q 003071 733 ESILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCL-QSG 810 (850)
Q Consensus 733 ~~~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~-y~G 810 (850)
++.++.+++ +|.+|+.++. |-.+.|.|+++.++++++-+|+.+.+...-..+.+++.....+.++...+.... ..-
T Consensus 282 e~r~~~l~e~~~~~i~~~d~--dG~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~e~ 359 (1092)
T PRK09776 282 ETRFRNAMEYSAIGMALVGT--EGQWLQVNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLLSGEINSYSMEK 359 (1092)
T ss_pred HHHHHHHHHhCCceEEEEcC--CCcEEehhHHHHHHhCCCHHHHccCCceeccCcchhHhHHHHHHHHHcCCccceeeee
Confidence 345667774 7999988765 779999999999999999999999988766666666666666666655443221 122
Q ss_pred eEEccCCCcEEEeeeEEeEeecCCCceEEEEEec
Q 003071 811 ICLSSMGRPISYERAVAWKVLNEEENAHCICFMF 844 (850)
Q Consensus 811 vRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F 844 (850)
....+.|+.++++-... -+.|++|...|....+
T Consensus 360 ~~~~~dG~~~~~~~~~~-~~~~~~g~~~~~i~~~ 392 (1092)
T PRK09776 360 RYYRRDGEVVWALLAVS-LVRDTDGTPLYFIAQI 392 (1092)
T ss_pred EEEcCCCCEEEEEEEEE-EEECCCCCEeeehhhH
Confidence 34567888877754333 3457788877654443
No 101
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=79.36 E-value=3.3 Score=42.08 Aligned_cols=57 Identities=19% Similarity=0.365 Sum_probs=42.7
Q ss_pred CCCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhccc
Q 003071 421 FTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADS 497 (850)
Q Consensus 421 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l 497 (850)
|++-+|..... .++|+|..++..+ +.+..-+++..+ +.||+.+++++.| +|.+||..
T Consensus 14 ~~~~~W~~~~~--~~~v~v~~~~~~~-----------------~~~~~~k~~~~i-~~s~e~v~~vi~d~e~~~~w~~~ 72 (195)
T cd08876 14 APDGDWQLVKD--KDGIKVYTRDVEG-----------------SPLKEFKAVAEV-DASIEAFLALLRDTESYPQWMPN 72 (195)
T ss_pred CCCCCCEEEec--CCCeEEEEEECCC-----------------CCeEEEEEEEEE-eCCHHHHHHHHhhhHhHHHHHhh
Confidence 44555987753 5789999887641 224455667778 7999999999998 89999974
No 102
>PRK10060 RNase II stability modulator; Provisional
Probab=78.14 E-value=10 Score=46.31 Aligned_cols=88 Identities=5% Similarity=-0.050 Sum_probs=62.8
Q ss_pred HHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCcc-ccccCccchhHHhhhhHHHHHhccccCCCeeE
Q 003071 735 ILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITL-EKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC 812 (850)
Q Consensus 735 ~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lps-r~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 812 (850)
.++.+++ ++.+|+..+. |=.++|+|+++.++++|+-+++.+.+. .+-..+.+.+.-.+.+..+.+.|-.......-
T Consensus 112 ~~~~v~~~~~~gI~i~D~--~g~I~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 189 (663)
T PRK10060 112 FAEQVVSEANSVIVILDS--RGNIQRFNRLCEEYTGLKEHDVIGQSVFKLFMSRREAAASRRNIRGFFRSGNAYEVERWI 189 (663)
T ss_pred HHHHHHhhCCceEEEEeC--CCCEEEEcHHHHHHHCcCHHHHcCCCHHHHhCChhhHHHHHHHHHHHHhcCCceEEEEEE
Confidence 3455664 7888888766 446999999999999999999999986 44445555555566677777777544333444
Q ss_pred EccCCCcEEEee
Q 003071 813 LSSMGRPISYER 824 (850)
Q Consensus 813 iss~Grrf~i~~ 824 (850)
..+.|+++++..
T Consensus 190 ~~~~G~~~~~~~ 201 (663)
T PRK10060 190 KTRKGQRLFLFR 201 (663)
T ss_pred EeCCCCEEEEEe
Confidence 678888887643
No 103
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=76.54 E-value=32 Score=32.62 Aligned_cols=132 Identities=18% Similarity=0.196 Sum_probs=71.0
Q ss_pred cceeEEeeChhhHHHHhcCchhhhhhCCcceEEeeccCCCcchHHHHHHHhhccccccCCce-eeEEeeceeeCCCcEEE
Q 003071 222 RACGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARD-FWLLRYTSVLEDGSLVV 300 (850)
Q Consensus 222 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re-~~fLRyckq~~~G~waV 300 (850)
|++-.|...+..+-+++.|.+.|.+-+|.++-..++..+.++.. + +. ..|. +.+++|+.. ++
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~--~--~~-------~~~~~~~~~~~~~~------v~ 64 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVV--L--EQ-------TGKQGILFFKFEAR------VV 64 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEE--E--EE-------eeeEEEEeeeeeEE------EE
Confidence 34566777899999999999999999998866665543333310 0 00 0111 223334322 12
Q ss_pred EEeecCCCCCCCCCCCCCCccceeec----C--cce-EEeeCCC-CceEEEEEEeeeccCCCccccchhhhchhHHHHHH
Q 003071 301 CERSLNNTQNGPSMPQAPHFVRAEML----P--SGY-LIRPCEG-GGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQK 372 (850)
Q Consensus 301 vDvSld~~~~~~~~~~~~~~~r~rrl----P--SGc-lIq~~~n-G~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar 372 (850)
.++..... + ....+.+.. + .|+ -+++.++ |.|.|+|--|++... .++. ++++.-+-=+.+
T Consensus 65 ~~~~~~~~---~-----~~~i~~~~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~-~~p~---~l~~~~~~~~~~ 132 (144)
T cd08866 65 LELREREE---F-----PRELDFEMVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDF-FAPV---FLVEFVLRQDLP 132 (144)
T ss_pred EEEEEecC---C-----CceEEEEEcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCC-CCCH---HHHHHHHHHHHH
Confidence 22211000 0 000111110 1 232 3678887 789999988877653 3433 666444444667
Q ss_pred HHHHHHH-HHh
Q 003071 373 TTMAALR-HLR 382 (850)
Q Consensus 373 ~w~~aLr-~~e 382 (850)
..+.+|| +||
T Consensus 133 ~~l~~lr~~ae 143 (144)
T cd08866 133 TNLLAIRAEAE 143 (144)
T ss_pred HHHHHHHHHHh
Confidence 7777775 565
No 104
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=76.37 E-value=14 Score=31.95 Aligned_cols=82 Identities=10% Similarity=-0.001 Sum_probs=56.3
Q ss_pred EcccHHHHHhhccCHHHhhcCc----cccccCccchhHHhhhhHH-HHHhccccCCCeeEEccCCCcEEEeeeEEeEeec
Q 003071 758 TFANQAGLDMLETTLVALQDIT----LEKIFDDSGRKTLCSEFPQ-IMQQGFMCLQSGICLSSMGRPISYERAVAWKVLN 832 (850)
Q Consensus 758 ~yaN~aaL~l~e~~w~~l~~lp----sr~sae~~~r~er~~lL~~-v~~qG~~~~y~GvRiss~Grrf~i~~a~vW~l~d 832 (850)
+|.|....++|+++-+++ +.+ +..-.-|.+|+.-...+.+ ..+.|-.....==.+.+.|+..+++. ..=-+.|
T Consensus 2 i~~s~~~~~i~G~~~~~~-~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~~e~R~~~~~G~~~wi~~-~~~~~~d 79 (91)
T PF08447_consen 2 IYWSDNFYEIFGYSPEEI-GKPDFEEWLERIHPDDRERVRQAIQQAALQNGEPFEIEYRIRRKDGEYRWIEV-RGRPIFD 79 (91)
T ss_dssp EEE-THHHHHHTS-HHHH-TCBEHHHHHHHB-TTTHHHHHHHHHHHHHHTT-EEEEEEEEEGTTSTEEEEEE-EEEEEET
T ss_pred EEEeHHHHHHhCCCHHHh-ccCCHHHHHhhcCHHHHHHHHHHHHHHhhccCcceEEEEEEECCCCCEEEEEE-EEEEEEC
Confidence 699999999999999999 777 5555578888888888888 56666444433334457888888854 4445568
Q ss_pred CCCceEEEE
Q 003071 833 EEENAHCIC 841 (850)
Q Consensus 833 ~~g~~~gqA 841 (850)
++|+..+..
T Consensus 80 ~~g~~~~~~ 88 (91)
T PF08447_consen 80 ENGKPIRII 88 (91)
T ss_dssp TTS-EEEEE
T ss_pred CCCCEEEEE
Confidence 999887654
No 105
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.30 E-value=8.7 Score=31.13 Aligned_cols=38 Identities=24% Similarity=0.174 Sum_probs=22.5
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 003071 93 AVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (850)
Q Consensus 93 ~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el 130 (850)
...+.|++..+.++.++++|.++.+.|+.|...|+..+
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455666666666666666665555555555555544
No 106
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=74.79 E-value=4.4 Score=43.70 Aligned_cols=54 Identities=17% Similarity=0.326 Sum_probs=39.3
Q ss_pred CCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhccc
Q 003071 422 TDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADS 497 (850)
Q Consensus 422 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l 497 (850)
..++|.... ..++|+|.++... .+++-+.=+-+ ++|++.||++|.| .|.+||..
T Consensus 53 ~~~~W~l~~--~k~gIkVytr~~s-------------------~~l~fk~e~~v-d~s~~~v~dlL~D~~~R~~WD~~ 108 (235)
T cd08873 53 AKSDWTVAS--STTSVTLYTLEQD-------------------GVLSFCVELKV-QTCASDAFDLLSDPFKRPEWDPH 108 (235)
T ss_pred ccCCCEEEE--cCCCEEEEEecCC-------------------CceEEEEEEEe-cCCHHHHHHHHhCcchhhhhhhc
Confidence 467897553 4678999988631 13333333446 8999999999998 99999964
No 107
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=74.00 E-value=6.5 Score=41.04 Aligned_cols=58 Identities=14% Similarity=0.365 Sum_probs=39.4
Q ss_pred CCCccccccCCCc--ceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhccc
Q 003071 423 DEGWSMLESDGID--DVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADS 497 (850)
Q Consensus 423 ~~~W~~l~~~g~~--dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l 497 (850)
+++|.......++ +|+|-.|+.. + .++.--++...+.++||+.|+++|.| .|.+||..
T Consensus 21 ~~~W~~~~~k~~~~~~i~vy~r~~~----~-------------s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~ 82 (209)
T cd08870 21 GQAWQQVMDKSTPDMSYQAWRRKPK----G-------------TGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDET 82 (209)
T ss_pred CCcceEhhhccCCCceEEEEecccC----C-------------CCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhh
Confidence 3789987643332 3666555542 1 12334556667767899999999998 89999974
No 108
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=71.55 E-value=44 Score=33.97 Aligned_cols=149 Identities=19% Similarity=0.297 Sum_probs=83.7
Q ss_pred HHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHHHH
Q 003071 406 LSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLR 485 (850)
Q Consensus 406 LaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~lf~ 485 (850)
|+.+.+..|..- .....++|.........++. +++... + . +..+...++..-+ +.++..+|.
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~W~~~~~~~~~~~~--~~~~~~---~-~----------~~~~~~~k~~~~v-~~~~~~~~~ 63 (206)
T PF01852_consen 2 LAEELMQEELAL-AQEDEDGWKLYKDKKNGDVY--YKKVSP---S-D----------SCPIKMFKAEGVV-PASPEQVVE 63 (206)
T ss_dssp HHHHHHHHHHHH-HHHTCTTCEEEEEETTTCEE--EEEEEC---S-S----------STSCEEEEEEEEE-SSCHHHHHH
T ss_pred HHHHHHHHHHHH-hhcCCCCCeEeEccCCCeEE--EEEeCc---c-c----------cccceEEEEEEEE-cCChHHHHH
Confidence 455555556533 35667899988733334443 334320 0 0 0135567777778 788887777
Q ss_pred HHhhhchhhcccccchhhHhhhhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEeeccccccccCCCCCceEEEe
Q 003071 486 FLREHRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQ 565 (850)
Q Consensus 486 FLRd~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQ 565 (850)
.|.+.+.+||....+ .+.+-.+ ++++.|.....+..- -..+.+||..+++
T Consensus 64 ~~~~~~~~Wd~~~~~-----------------------~~~le~~----~~~~~i~~~~~~~~~---~~p~~~RDfv~~~ 113 (206)
T PF01852_consen 64 DLLDDREQWDKMCVE-----------------------AEVLEQI----DEDTDIVYFVMKSPW---PGPVSPRDFVFLR 113 (206)
T ss_dssp HHHCGGGHHSTTEEE-----------------------EEEEEEE----ETTEEEEEEEEE-CT---TTTSSEEEEEEEE
T ss_pred HHHhhHhhcccchhh-----------------------heeeeec----CCCCeEEEEEecccC---CCCCCCcEEEEEE
Confidence 777644499975311 2333333 233445555444321 1135568888888
Q ss_pred eccCCCCCCCCceeEEEEeeccCCC-----CCCC--CccCCccEEecC
Q 003071 566 LCSGVDENAVGNCAELVFAPIDASF-----SDDA--PIIPSGFRIIPL 606 (850)
Q Consensus 566 e~~~~De~~~G~~s~vVyAPvD~~d-----s~~v--~LLPSGF~IlP~ 606 (850)
-.. .+ ..|+ -.+++..||-+. +..| -+++|||.|-|+
T Consensus 114 ~~~-~~--~~~~-~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~ 157 (206)
T PF01852_consen 114 SWR-KD--EDGT-YVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPL 157 (206)
T ss_dssp EEE-EC--TTSE-EEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEE
T ss_pred EEE-Ee--ccce-EEEEEeeeccccccccccCcceeeeeeEeEEEEEc
Confidence 753 33 3442 355566777652 2333 489999999993
No 109
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=71.45 E-value=9.4 Score=42.22 Aligned_cols=32 Identities=28% Similarity=0.314 Sum_probs=15.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003071 98 LTAMNKLLMEENDRLQKQVSQLVYENTFFRQQ 129 (850)
Q Consensus 98 l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~e 129 (850)
+..+.+.+...|++|..++++|..|.++||+=
T Consensus 253 l~ge~~~Le~rN~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 253 LLGELEGLEKRNEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444455555555543
No 110
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=71.32 E-value=30 Score=40.07 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=69.6
Q ss_pred HHHHhh-cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEE
Q 003071 735 ILKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICL 813 (850)
Q Consensus 735 ~~~~l~-~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 813 (850)
..+.++ ..|.+|+..+. +-.++|.|+++.++|+++.+++.+.+...-.++.. . ....+.++.+.|-.....-+++
T Consensus 263 ~~~~i~~~~~~~i~~~d~--~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~ 338 (607)
T PRK11360 263 LNELILESIADGVIAIDR--QGKITTMNPAAEVITGLQRHELVGKPYSELFPPNT-P-FASPLLDTLEHGTEHVDLEISF 338 (607)
T ss_pred HHHHHHHhccCeEEEEcC--CCCEEEECHHHHHHhCCChHHhcCCcHHHHcCCch-h-HHHHHHHHHhcCCCccceEEEE
Confidence 345556 47999998885 55799999999999999999999988776665432 1 2234445555544333334444
Q ss_pred ccCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 814 SSMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 814 ss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
...+....+ ...+=.+.|++|...|...+|.+
T Consensus 339 ~~~~~~~~~-~~~~~~i~~~~g~~~~~i~~~~D 370 (607)
T PRK11360 339 PGRDRTIEL-SVSTSLLHNTHGEMIGALVIFSD 370 (607)
T ss_pred EcCCCcEEE-EEEEeeEEcCCCCEEEEEEEEee
Confidence 444333333 23333567889998888777754
No 111
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=71.25 E-value=7.5 Score=40.75 Aligned_cols=58 Identities=16% Similarity=0.336 Sum_probs=42.7
Q ss_pred CCCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhccc
Q 003071 421 FTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADS 497 (850)
Q Consensus 421 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l 497 (850)
-.+.+|..... .++|+|-.|... + ..+.--++...++.++|+.++++|.| .|.+||..
T Consensus 22 ~~~~~W~l~~~--~~~i~Vy~r~~~----~-------------s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~ 81 (207)
T cd08910 22 LDGAAWELLVE--SSGISIYRLLDE----Q-------------SGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQY 81 (207)
T ss_pred CCCCCeEEEEe--cCCeEEEEeccC----C-------------CCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHH
Confidence 34467987753 468898877653 1 23445677777855999999999998 89999974
No 112
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=70.91 E-value=35 Score=36.86 Aligned_cols=163 Identities=15% Similarity=0.170 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCccccccCCC-----cceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccc
Q 003071 402 ALRALSQRLSRGFNEALNGFTDEGWSMLESDGI-----DDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQ 476 (850)
Q Consensus 402 sl~kLaqRM~~~F~~~v~~s~~~~W~~l~~~g~-----~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~ 476 (850)
-|+.||..-+..|-. +.-...--|.+..+.+. |....+..+.. +...++..+..+-++-..
T Consensus 3 ~~~~lA~~am~Ell~-~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~------------~~~~~~~~~eASR~~glV- 68 (229)
T cd08875 3 GLLELAEEAMDELLK-LAQGGEPLWIKSPGMKPEILNPDEYERMFPRHG------------GSKPGGFTTEASRACGLV- 68 (229)
T ss_pred HHHHHHHHHHHHHHH-HhccCCCCceecCCCCccccCHHHHhhcccCcC------------CCCCCCCeEEEEeeeEEE-
Confidence 588999999999984 44455678998765532 22111111111 111134577888888888
Q ss_pred cCChHHHHHHHhhhchhhccc-ccchhhHhhhhcCCCCCCCCCCCCcccceEeccccc--CCCCceEEEEEeeccccccc
Q 003071 477 DVPPAILLRFLREHRSEWADS-SIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHT--IEHEEFLEVIKLENMAHYRE 553 (850)
Q Consensus 477 pvpp~~lf~FLRd~R~eWd~l-~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g--~~~~n~vsllr~~~~~~~~~ 553 (850)
++.|..|.++|.|. .+|-.+ ..+...+ ..+.-|..| ...+..+.|+..+-+-++
T Consensus 69 ~m~~~~lVe~lmD~-~kW~~~Fp~iv~~a--------------------~tl~vistg~~g~~~G~lqlmyael~~pS-- 125 (229)
T cd08875 69 MMNAIKLVEILMDV-NKWSELFPGIVSKA--------------------KTLQVISTGNGGNRNGTLQLMYAELQVPS-- 125 (229)
T ss_pred ecCHHHHHHHHhCh-hhhhhhhhhhccee--------------------eEEEEeeCCCCCCCCceehhhhhhcccCc--
Confidence 79999999999993 234432 1110111 111111222 123446777766643332
Q ss_pred cCCCCCceEEEeeccCCCCCCCCceeEEEE-eeccCC----CCCC---CCccCCccEEecC
Q 003071 554 DMIMPSDIFLLQLCSGVDENAVGNCAELVF-APIDAS----FSDD---APIIPSGFRIIPL 606 (850)
Q Consensus 554 ~~~~~~~~liLQe~~~~De~~~G~~s~vVy-APvD~~----ds~~---v~LLPSGF~IlP~ 606 (850)
--+..|+..+|.-|...+ .| +.+|. =.+|-. .+.. --.+||||-|=|.
T Consensus 126 pLVp~Re~~fLRyc~~l~---dG--~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~ 181 (229)
T cd08875 126 PLVPTREFYFLRYCKQLE---DG--LWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDM 181 (229)
T ss_pred ccccCCeEEEEEEEEEeC---CC--eEEEEEEeecccccCCCCCCccEEEEecCcEEEEEC
Confidence 236678999999986444 55 34432 244432 1121 2379999999883
No 113
>smart00340 HALZ homeobox associated leucin zipper.
Probab=69.10 E-value=8.3 Score=30.88 Aligned_cols=26 Identities=42% Similarity=0.433 Sum_probs=20.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003071 96 RKLTAMNKLLMEENDRLQKQVSQLVY 121 (850)
Q Consensus 96 ~~l~a~n~~l~ee~~~l~~~~~~L~~ 121 (850)
+-|+..++.+.+||.+|++++++||.
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778888888888888887777765
No 114
>PRK09776 putative diguanylate cyclase; Provisional
Probab=68.78 E-value=26 Score=44.76 Aligned_cols=107 Identities=11% Similarity=0.056 Sum_probs=68.9
Q ss_pred HHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCc---cchhHHhhhhHHHHHhccc-c-CCC
Q 003071 736 LKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDD---SGRKTLCSEFPQIMQQGFM-C-LQS 809 (850)
Q Consensus 736 ~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~---~~r~er~~lL~~v~~qG~~-~-~y~ 809 (850)
.+.+++ .|++|+..+. +=.++|.|+++.++++++-+|+.+.|...-... ........ +.+....+-. . ...
T Consensus 538 l~~~l~~~~~~i~~~D~--~g~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 614 (1092)
T PRK09776 538 LHITLDSIGEAVVCTDM--AMKVTFMNPVAEKMTGWTQEEALGVPLLTVLHITFGDNGPLMEN-IYSCLTSRSAAYLEQD 614 (1092)
T ss_pred HHHHHhccccEEEEECC--CCeEEEEcHHHHHHhCCCHHHHcCCCHHHHcccccCCcchhhHH-HHHHHhcCCCccccce
Confidence 344453 6888888776 457999999999999999999999886543321 11112222 3333222211 1 112
Q ss_pred eeEEccCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 810 GICLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 810 GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
-....+.|++++++- .+-.+.|++|...|.-.++.+
T Consensus 615 ~~~~~~~G~~~~~~~-~~~pi~~~~g~~~g~v~~~~D 650 (1092)
T PRK09776 615 VVLHCRSGGSYDVHY-SITPLSTLDGENIGSVLVIQD 650 (1092)
T ss_pred EEEEeCCCcEEEEEE-EeeeeecCCCCEEEEEEEEEe
Confidence 234578899998864 566788999999887777654
No 115
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=68.57 E-value=9.4 Score=42.20 Aligned_cols=36 Identities=22% Similarity=0.114 Sum_probs=21.7
Q ss_pred HHHHhhHHHHHHHHHH----HHHHHHHHHHhHHHHHHhhh
Q 003071 97 KLTAMNKLLMEENDRL----QKQVSQLVYENTFFRQQTQN 132 (850)
Q Consensus 97 ~l~a~n~~l~ee~~~l----~~~~~~L~~En~~Lk~el~~ 132 (850)
.+.+||+.|++++.++ +...++|+.||++||+.|.-
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455555555554443 22233488999999987764
No 116
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=68.37 E-value=15 Score=30.36 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhh
Q 003071 108 ENDRLQKQVSQLVYENTFFRQQTQN 132 (850)
Q Consensus 108 e~~~l~~~~~~L~~En~~Lk~el~~ 132 (850)
....++.+++.|..+|..|++++..
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666666666666554
No 117
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=68.11 E-value=26 Score=31.20 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=18.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 003071 97 KLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (850)
Q Consensus 97 ~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~ 131 (850)
.|+.+++.+++++..+..+-..|+.||.+|+++..
T Consensus 22 ~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~ 56 (72)
T PF06005_consen 22 LLQMENEELKEKNNELKEENEELKEENEQLKQERN 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555556666555543
No 118
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=67.43 E-value=12 Score=41.21 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 109 NDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 109 ~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
...|++|-+.|+.+..+|++|+..+
T Consensus 224 ~~~leken~~lr~~v~~l~~el~~~ 248 (269)
T KOG3119|consen 224 VAELEKENEALRTQVEQLKKELATL 248 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 119
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=67.29 E-value=20 Score=38.62 Aligned_cols=47 Identities=32% Similarity=0.369 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 003071 85 RKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (850)
Q Consensus 85 r~~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~ 131 (850)
-.++..++.+|+.|++.|+.|..++.++..++..++.|.+.++++.+
T Consensus 103 ~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~ 149 (292)
T KOG4005|consen 103 TEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQ 149 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHH
Confidence 35677888999999999999999999998888888888888887654
No 120
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=66.37 E-value=13 Score=35.34 Aligned_cols=45 Identities=29% Similarity=0.357 Sum_probs=26.7
Q ss_pred eEEeecccc--hhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHH
Q 003071 70 QIKVWFQNR--RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQK 114 (850)
Q Consensus 70 QVkvWFQNR--Rak~Krr~~~~~l~~~n~~l~a~n~~l~ee~~~l~~ 114 (850)
+...||++. +.-.+.+++...+++++++++.+|+.|+++.+.++.
T Consensus 16 ~y~l~~g~~G~~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 16 QYSLWFGKNGILDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 456788765 333444455555666666666666666666555544
No 121
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=65.96 E-value=59 Score=30.47 Aligned_cols=120 Identities=13% Similarity=0.097 Sum_probs=63.0
Q ss_pred ceeEEeeChhhHHHHhcCchhhhhhCCcceEEeeccCCCcchHHHHHHHhhccccccCCceeeEEeeceeeCCCcEEEEE
Q 003071 223 ACGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCE 302 (850)
Q Consensus 223 ~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvD 302 (850)
.+-.+...+.++.++|.|.+.|.+-+|.++-+..+..|. ..+ +....+ .|+ ..|--...+|+..-++..+++.-
T Consensus 5 ~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~~---~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd05018 5 GEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPNE---YEA-TVKLKV-GPV-KGTFKGKVELSDLDPPESYTITG 78 (144)
T ss_pred eEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCCCe---EEE-EEEEEE-ccE-EEEEEEEEEEEecCCCcEEEEEE
Confidence 344566788999999999999999998776555544221 110 011111 222 12322234554433344444332
Q ss_pred eecCCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCCCccccchhhh
Q 003071 303 RSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLY 363 (850)
Q Consensus 303 vSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyRpl~ 363 (850)
..... ..+. ..=--+-+.+. +|+|+|||.-+++..- .+..+..+++
T Consensus 79 ~~~~~----------~~~~---~~~~~~~l~~~-~~gT~v~~~~~~~~~g-~l~~l~~~~~ 124 (144)
T cd05018 79 EGKGG----------AGFV---KGTARVTLEPD-GGGTRLTYTADAQVGG-KLAQLGSRLI 124 (144)
T ss_pred EEcCC----------CceE---EEEEEEEEEec-CCcEEEEEEEEEEEcc-ChhhhCHHHH
Confidence 11110 0011 11123457787 6779999999999653 3333344443
No 122
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=64.76 E-value=32 Score=30.61 Aligned_cols=47 Identities=28% Similarity=0.347 Sum_probs=35.2
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 87 EASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 87 ~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
....++.+++.|+.+|..+.+++..|..+.++|+.|....+..+..+
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777888888888888888888888888888877777666543
No 123
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=64.68 E-value=3.4 Score=50.22 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=44.3
Q ss_pred HHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 35 VEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 35 l~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
+..|...|..|..|+...-..++.+. |+..+.||.||+++++....-+
T Consensus 568 ~sllkayyaln~~ps~eelskia~qv----glp~~vvk~wfE~~~a~e~sv~ 615 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQV----GLPFAVVKAWFEDEEAEEMSVE 615 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHh----cccHHHHHHHHHhhhhhhhhhc
Confidence 78899999999999999999999999 9999999999999998877644
No 124
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=64.61 E-value=20 Score=39.10 Aligned_cols=37 Identities=27% Similarity=0.200 Sum_probs=22.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH---HHHHHhHHHHHHhhh
Q 003071 96 RKLTAMNKLLMEENDRLQKQVS---QLVYENTFFRQQTQN 132 (850)
Q Consensus 96 ~~l~a~n~~l~ee~~~l~~~~~---~L~~En~~Lk~el~~ 132 (850)
.++.++|+.|++|+.+++.+.. +++.||.+||+.+.-
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455555555555555544443 578888888887653
No 125
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=64.33 E-value=9.1 Score=40.05 Aligned_cols=57 Identities=19% Similarity=0.334 Sum_probs=40.0
Q ss_pred CCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhccc
Q 003071 422 TDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADS 497 (850)
Q Consensus 422 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l 497 (850)
-..+|..... .++|+|-.|...+ +++.--++...+.++|++.+|++|.| .|.+||..
T Consensus 19 ~~~~W~l~~~--~~~i~Vy~r~~~~-----------------s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~ 77 (207)
T cd08911 19 EPDGWEPFIE--KKDMLVWRREHPG-----------------TGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDAT 77 (207)
T ss_pred cCCCcEEEEE--cCceEEEEeccCC-----------------CCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhh
Confidence 3456987753 5678988777641 11223455454558999999999998 89999974
No 126
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=64.09 E-value=10 Score=40.93 Aligned_cols=55 Identities=16% Similarity=0.409 Sum_probs=43.2
Q ss_pred CCCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhccc
Q 003071 421 FTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADS 497 (850)
Q Consensus 421 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l 497 (850)
...++|..-. ..++|+|-++.. +.+++-++-+-+ ++|++.+|++|.| .|.+||..
T Consensus 53 a~~~~W~l~~--dkdgIkVytr~~-------------------s~~l~fk~e~~v-dvs~~~l~~LL~D~~~r~~Wd~~ 109 (236)
T cd08914 53 AAKSGWEVTS--TVEKIKIYTLEE-------------------HDVLSVWVEKHV-KRPAHLAYRLLSDFTKRPLWDPH 109 (236)
T ss_pred cccCCCEEEE--ccCCEEEEEecC-------------------CCcEEEEEEEEE-cCCHHHHHHHHhChhhhchhHHh
Confidence 4578997653 457899998741 125778888888 8999999999999 89999964
No 127
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=64.04 E-value=18 Score=29.30 Aligned_cols=37 Identities=24% Similarity=0.226 Sum_probs=26.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhc
Q 003071 98 LTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNAA 134 (850)
Q Consensus 98 l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~~ 134 (850)
+..+++.|+...+.|..+-..|..||+.|+.|+..+.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777777777777777777664
No 128
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=63.33 E-value=4.5 Score=33.53 Aligned_cols=46 Identities=15% Similarity=0.227 Sum_probs=35.0
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccc
Q 003071 24 NGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNR 78 (850)
Q Consensus 24 rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNR 78 (850)
+|+|..+|.+|...+-..++..+ ...++|+++ |+...+|..|..||
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~f----gv~~sTv~~I~K~k 46 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREF----GVSRSTVSTILKNK 46 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHH----T--CCHHHHHHHCH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHh----CCCHHHHHHHHHhH
Confidence 46788999998888888888776 688899999 99999999998874
No 129
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=62.94 E-value=42 Score=33.17 Aligned_cols=107 Identities=15% Similarity=0.218 Sum_probs=60.0
Q ss_pred ceeEEeeChhhHHHHhcCchhhhhhCCcceEEeeccCCCcchHHHHHHHh--hccccccCCceeeEEeeceeeCCCcEEE
Q 003071 223 ACGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPTGSSGTIELLYMQL--YAPTTLAPARDFWLLRYTSVLEDGSLVV 300 (850)
Q Consensus 223 ~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~--~v~SPLVp~Re~~fLRyckq~~~G~waV 300 (850)
.+-+|.-.+..+-+++-|..+|-+.||.+.-+.++..|..|.. +.+ +...+ ..+.-|.=|.+ +....|-|
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~----~r~~i~~~~~--g~~~~w~s~~~--~~~~~~~i 76 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVR----FRLTMHPDAN--GTVWSWVSERT--LDPVNRTV 76 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEE----EEEEEEeccC--CEEEEEEEEEE--ecCCCcEE
Confidence 4556677899999999999999999997755555554433310 223 22221 12222222333 33344433
Q ss_pred EEeecCCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeecc
Q 003071 301 CERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLE 351 (850)
Q Consensus 301 vDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d 351 (850)
.=..... +| |. .+=-...+++.++| |+|++.-+++..
T Consensus 77 ~~~~~~~---~p-------~~---~m~~~W~f~~~~~g-T~V~~~~~~~~~ 113 (146)
T cd08860 77 RARRVET---GP-------FA---YMNIRWEYTEVPEG-TRMRWVQDFEMK 113 (146)
T ss_pred EEEEecC---CC-------cc---eeeeeEEEEECCCC-EEEEEEEEEEEC
Confidence 3112211 11 11 12233456888887 999999998865
No 130
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=62.92 E-value=23 Score=32.19 Aligned_cols=98 Identities=11% Similarity=-0.006 Sum_probs=62.5
Q ss_pred cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcE
Q 003071 741 HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPI 820 (850)
Q Consensus 741 ~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf 820 (850)
..|.+|+-.+. +=.+.|-|++|.++|... ...+|-|..--..+...+.-...+.++...+- ...-+.+...||.|
T Consensus 7 s~~~~i~~vD~--~~~I~~~n~~a~~~f~~~-~~~iGr~l~~~~~~~~~~~l~~~i~~~~~~~~--~~~~~~~~~~~~~~ 81 (106)
T PF13596_consen 7 SMPIGIIFVDR--NLRIRYFNPAAARLFNLS-PSDIGRPLFDIHPPLSYPNLKKIIEQVRSGKE--EEFEIVIPNGGRWY 81 (106)
T ss_dssp HSSSEEEEEET--TSBEEEE-SCGC-SS----GGGTTSBCCCSS-HHHHHHHHHHHHHHHTTSB--SEEEEEEEETTEEE
T ss_pred cCCCCEEEEcC--CCeEEEeChhHhhhcCCC-hHHCCCCHHHcCCccchHHHHHHHHHHHcCCC--ceEEEEecCCCEEE
Confidence 36888888876 678999999999999966 45567776655555556666666766664432 11233455667766
Q ss_pred EEeeeEEeEeecCCCceEEEEEeccc
Q 003071 821 SYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 821 ~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
.+ .+=-+.|++|++.|...+|.|
T Consensus 82 ~~---~~~P~~~~~g~~~G~v~~~~D 104 (106)
T PF13596_consen 82 LV---RYRPYRDEDGEYAGAVITFQD 104 (106)
T ss_dssp EE---EEEEEE-TTS-EEEEEEEEEE
T ss_pred EE---EEEEEECCCCCEEEEEEEEEe
Confidence 66 555677999999999999865
No 131
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=61.20 E-value=27 Score=41.19 Aligned_cols=56 Identities=30% Similarity=0.407 Sum_probs=29.5
Q ss_pred cCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHHHHHHHHHhHHHHHhhHHHHHH
Q 003071 29 RYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEE 108 (850)
Q Consensus 29 r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~~~~l~~~n~~l~a~n~~l~ee 108 (850)
.++++++..|+- +.-.|..--|--.+ ++ + | -+++...+..+|+.|+++|+.|++.
T Consensus 41 ~ltpee~kalGi---egDTP~DTlrTlva-~~--------k------~-------~r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 41 ELSPEELKALGI---EGDTPADTLRTLVA-EV--------K------E-------LRKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred cCCcchhHhcCC---CCCCccchHHHHHH-HH--------H------H-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678888777753 33455544444333 22 0 0 1233344555666666666666653
Q ss_pred H
Q 003071 109 N 109 (850)
Q Consensus 109 ~ 109 (850)
.
T Consensus 96 ~ 96 (472)
T TIGR03752 96 E 96 (472)
T ss_pred h
Confidence 3
No 132
>smart00338 BRLZ basic region leucin zipper.
Probab=61.04 E-value=54 Score=27.97 Aligned_cols=45 Identities=31% Similarity=0.443 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 003071 79 RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYEN 123 (850)
Q Consensus 79 Rak~Krr~~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En 123 (850)
++|.|++.....++.....|..+|..|+.+...++.+...|+.++
T Consensus 19 ~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 19 RSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555566666666666666666666666665544
No 133
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=58.65 E-value=16 Score=38.36 Aligned_cols=56 Identities=16% Similarity=0.348 Sum_probs=40.4
Q ss_pred CCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh----hchhhccc
Q 003071 422 TDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE----HRSEWADS 497 (850)
Q Consensus 422 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~lf~FLRd----~R~eWd~l 497 (850)
..++|.... ..++|+|.++++.. .+ |-+ -++-.-+ |++|+.||++|.| .|.+||..
T Consensus 20 ~~~~W~~~~--~~~~i~v~~~~~~~--~~-------------~~~--~k~e~~i-~~s~~~~~~~l~d~~~~~r~~W~~~ 79 (208)
T cd08903 20 DESGWKTCR--RTNEVAVSWRPSAE--FA-------------GNL--YKGEGIV-YATLEQVWDCLKPAAGGLRVKWDQN 79 (208)
T ss_pred cccCCEEEE--cCCCEEEEeeecCC--CC-------------CcE--EEEEEEe-cCCHHHHHHHHHhccchhhhhhhhc
Confidence 567898775 24699999998752 11 222 3444566 8999999999984 68999964
No 134
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=58.38 E-value=47 Score=32.87 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhh
Q 003071 108 ENDRLQKQVSQLVYENTFFRQQTQ 131 (850)
Q Consensus 108 e~~~l~~~~~~L~~En~~Lk~el~ 131 (850)
++..|..|+++|+.||.+++.|++
T Consensus 82 ~k~~L~qqv~~L~~e~s~~~~E~d 105 (135)
T KOG4196|consen 82 EKAELQQQVEKLKEENSRLRRELD 105 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555554
No 135
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=58.35 E-value=14 Score=39.92 Aligned_cols=55 Identities=20% Similarity=0.407 Sum_probs=39.4
Q ss_pred CCCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhccc
Q 003071 421 FTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADS 497 (850)
Q Consensus 421 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l 497 (850)
...++|..-.. .++|+|.++... . +++-++=+-+ ++|++.||++|.| .|.+||..
T Consensus 56 ~~~~~W~l~~~--~~gI~Vyt~~~s-----------------~--~~~fK~e~~v-d~s~e~v~~lL~D~~~r~~Wd~~ 112 (240)
T cd08913 56 VAKDNWVLSSE--KNQVRLYTLEED-----------------K--FLSFKVEMVV-HVDAAQAFLLLSDLRRRPEWDKH 112 (240)
T ss_pred cccCCCEEEEc--cCCEEEEEEeCC-----------------C--ccEEEEEEEE-cCCHHHHHHHHhChhhhhhhHhh
Confidence 45668976542 478999985431 0 1233555677 8999999999998 89999964
No 136
>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).
Probab=57.85 E-value=33 Score=24.08 Aligned_cols=52 Identities=17% Similarity=0.250 Sum_probs=36.3
Q ss_pred HHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchh
Q 003071 737 KTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRK 790 (850)
Q Consensus 737 ~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~ 790 (850)
+.+++ .+.+++.++. +-.+.|.|..+.++++++..++.+.+...-..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (67)
T smart00091 4 RAILESLPDGIFVLDL--DGRILYANPAAEELLGYSPEELIGKSLLELIHPEDRE 56 (67)
T ss_pred HHHHhhCCceEEEEcC--CCeEEEECHHHHHHhCCCHHHHcCCcHHHhcCcccHH
Confidence 34453 5666666664 4567899999999999999998877655545554443
No 137
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=57.69 E-value=40 Score=41.45 Aligned_cols=99 Identities=11% Similarity=-0.031 Sum_probs=64.5
Q ss_pred hhcCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccC--CC--eeEEc
Q 003071 739 LWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCL--QS--GICLS 814 (850)
Q Consensus 739 l~~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~--y~--GvRis 814 (850)
+=+.|.+|+..+. +-.++|.|.++.++|+++-+|+.+-|...-..+..+......+.++...|-... +. -....
T Consensus 18 le~~~~~i~~~d~--~g~i~~~N~~~~~l~G~s~eeliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 95 (799)
T PRK11359 18 LEQNMMGAVLINE--NDEVLFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRELQLEK 95 (799)
T ss_pred HHhhcCcEEEEcC--CCeEEEEcHHHHHHhCCCHHHHcCCCHHHhcCccccccchHHHhhhhccCCccccccceeeEEec
Confidence 3357888888775 568999999999999999999999877665555554444444444444432211 11 12346
Q ss_pred cCCCcEEEeeeEEeEeecCCCceEEEE
Q 003071 815 SMGRPISYERAVAWKVLNEEENAHCIC 841 (850)
Q Consensus 815 s~Grrf~i~~a~vW~l~d~~g~~~gqA 841 (850)
+.|++++++-.. ..++.+|...+.+
T Consensus 96 ~dG~~~~v~~~~--~~~~~~g~~~~~~ 120 (799)
T PRK11359 96 KDGSKIWTRFAL--SKVSAEGKVYYLA 120 (799)
T ss_pred CCcCEEEEEEEe--eeeccCCceEEEE
Confidence 788888876433 4456677765543
No 138
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=57.64 E-value=25 Score=41.21 Aligned_cols=93 Identities=24% Similarity=0.289 Sum_probs=52.8
Q ss_pred cCCHHHHHHHHHh-HhcC-CCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHHHH-HH-HHHhHHHHHhhHH
Q 003071 29 RYTPEQVEALERL-YHEC-PKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS-RL-QAVNRKLTAMNKL 104 (850)
Q Consensus 29 r~T~~Ql~~LE~~-F~~~-~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~~~-~l-~~~n~~l~a~n~~ 104 (850)
++|.+....|.+. |... .+|-.+.-+++-++. ||..|.|+-..++ +. +.--+.+......
T Consensus 220 ~LteeEkrLL~kEG~slPs~lPLTKaEEriLKrv----------------RRKIrNK~SAQESRrkKkeYid~LE~rv~~ 283 (472)
T KOG0709|consen 220 VLTEEEKRLLTKEGYSLPSKLPLTKAEERILKRV----------------RRKIRNKRSAQESRRKKKEYIDGLESRVSA 283 (472)
T ss_pred eccHHHHHHHHhccCcCcccCCchHHHHHHHHHH----------------HHHHHhhhhhHHHHHhHhhHHHHHhhhhhh
Confidence 5677777776553 2222 556666556655555 2222222211111 11 1112334444455
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhcccc
Q 003071 105 LMEENDRLQKQVSQLVYENTFFRQQTQNAATLA 137 (850)
Q Consensus 105 l~ee~~~l~~~~~~L~~En~~Lk~el~~~~~~~ 137 (850)
.-++|.+|++++++|..+|..|-++|.++-++.
T Consensus 284 ~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v 316 (472)
T KOG0709|consen 284 FTAENQELQKKVEELELSNRSLLAQLKKLQTLV 316 (472)
T ss_pred cccCcHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 556778899999999999999999999875443
No 139
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=57.19 E-value=1.5e+02 Score=27.41 Aligned_cols=35 Identities=11% Similarity=0.012 Sum_probs=27.3
Q ss_pred eeEEeeChhhHHHHhcCchhhhhhCCcceEEeecc
Q 003071 224 CGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLP 258 (850)
Q Consensus 224 ~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~ 258 (850)
+..|...+.++-+.|.|.+.|.+-+|.+..+....
T Consensus 6 ~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~ 40 (140)
T cd07821 6 SVTIDAPADKVWALLSDFGGLHKWHPAVASCELEG 40 (140)
T ss_pred EEEECCCHHHHHHHHhCcCchhhhccCcceEEeec
Confidence 34567788999999999999998888776555544
No 140
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=57.17 E-value=16 Score=43.44 Aligned_cols=29 Identities=24% Similarity=0.218 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 105 LMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 105 l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
|+..+..+.+|-++|+.||+-||++|.-+
T Consensus 307 Le~rLq~ll~Ene~Lk~ENatLk~qL~~l 335 (655)
T KOG4343|consen 307 LEARLQALLSENEQLKKENATLKRQLDEL 335 (655)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34444566777788999999999999876
No 141
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=56.47 E-value=57 Score=30.93 Aligned_cols=134 Identities=14% Similarity=0.117 Sum_probs=72.2
Q ss_pred ceeEEeeChhhHHHHhcCchhhhhhCCcceEEeeccCCCcchHHHHHHHhhccccccCCceeeEEeeceeeCCCcEEEEE
Q 003071 223 ACGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCE 302 (850)
Q Consensus 223 ~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvD 302 (850)
.+-.|...+..+.+++-|.+.|.+.+|.+.-..++..+.++ +.+++.+..|. -.|++. .|++- ..+..+ -=
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~----~~~~~~~~~~~-~~~~~~-~~~~~--~~~~~i-~~ 73 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDE----LEAELTVGFGG-IRESFT-SRVTL--VPPESI-EA 73 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCE----EEEEEEEeecc-ccEEEE-EEEEe--cCCCEE-EE
Confidence 34556677888999999999999999876444444333222 11222232232 133333 33331 123322 11
Q ss_pred eecCCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCCCccccchhhhchhHHHHHHHHHHHHH-HH
Q 003071 303 RSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HL 381 (850)
Q Consensus 303 vSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar~w~~aLr-~~ 381 (850)
.++++ + |. .+=--..+++.++|.|+|+|.-|++..- .++.+|++.-+.=..+..+.+++ .|
T Consensus 74 ~~~~g----~-------~~---~~~g~w~~~p~~~~~T~v~~~~~~~~~~----~l~~~l~~~~~~~~~~~~l~~f~~~~ 135 (138)
T cd07813 74 ELVDG----P-------FK---HLEGEWRFKPLGENACKVEFDLEFEFKS----RLLEALAGLVFDEVAKKMVDAFEKRA 135 (138)
T ss_pred EecCC----C-------hh---hceeEEEEEECCCCCEEEEEEEEEEECC----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 0 11 1113455789999999999999999762 24444543333335566666663 56
Q ss_pred hh
Q 003071 382 RQ 383 (850)
Q Consensus 382 e~ 383 (850)
++
T Consensus 136 ~~ 137 (138)
T cd07813 136 KQ 137 (138)
T ss_pred hh
Confidence 54
No 142
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=56.24 E-value=48 Score=35.63 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=34.5
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 87 EASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 87 ~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
+-..++.++..|..++..+..+.+..+.++..|+.||.+|.+++.++
T Consensus 143 kl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 143 KLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445566667777777777777777777888888888888888765
No 143
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=56.20 E-value=63 Score=27.51 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=15.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003071 97 KLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQ 129 (850)
Q Consensus 97 ~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~e 129 (850)
.|......+..++..|..++..|..++..|+.+
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444444444444443
No 144
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=55.84 E-value=35 Score=37.58 Aligned_cols=36 Identities=28% Similarity=0.227 Sum_probs=21.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 98 LTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 98 l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
+...-..|.+|++.|..++.+|+.|+..|++-+...
T Consensus 220 ~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 220 MAHRVAELEKENEALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333445555566666666667777777777666543
No 145
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=54.80 E-value=46 Score=30.24 Aligned_cols=43 Identities=28% Similarity=0.288 Sum_probs=27.2
Q ss_pred HHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 003071 89 SRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (850)
Q Consensus 89 ~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~ 131 (850)
..++.+-+.++..|..+.+++..+...-..|..||.+||+|..
T Consensus 21 ~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 21 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666555555557777777777754
No 146
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=52.73 E-value=37 Score=36.03 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=51.0
Q ss_pred HHHHhh-cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEE
Q 003071 735 ILKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICL 813 (850)
Q Consensus 735 ~~~~l~-~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 813 (850)
.++.++ +.|.+|+..+.+. ..+|+|+++.++|++++++..+.|...-..+ ..+.++..++......-+ .
T Consensus 7 ~l~~~~~~~~~~i~~~d~~g--~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~-------~~~~~~l~~~~~~~~~~~-~ 76 (333)
T TIGR02966 7 RFRAAAQALPDAVVVLDEEG--QIEWCNPAAERLLGLRWPDDLGQRITNLIRH-------PEFVEYLAAGRFSEPLEL-P 76 (333)
T ss_pred HHHHHHHhCcCcEEEECCCC--cEEEEcHHHHHHhCCChHHHcCCcHHHHccC-------HHHHHHHHhcccCCCeEe-e
Confidence 345666 4799999888644 5999999999999999999998776544432 224444455544222222 2
Q ss_pred ccCCCcEEEe
Q 003071 814 SSMGRPISYE 823 (850)
Q Consensus 814 ss~Grrf~i~ 823 (850)
.+.|..+++.
T Consensus 77 ~~~~~~~~~~ 86 (333)
T TIGR02966 77 SPINSERVLE 86 (333)
T ss_pred cCCCCceEEE
Confidence 2455555543
No 147
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.24 E-value=49 Score=29.42 Aligned_cols=41 Identities=27% Similarity=0.235 Sum_probs=24.4
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 003071 90 RLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (850)
Q Consensus 90 ~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el 130 (850)
.++-+-+.|+..|..+..+....+.....|+.||.+||+|-
T Consensus 22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~ 62 (79)
T COG3074 22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQ 62 (79)
T ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666666555555555556666777776664
No 148
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=51.93 E-value=44 Score=34.20 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=20.4
Q ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 003071 92 QAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQN 132 (850)
Q Consensus 92 ~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~ 132 (850)
+.+|..++.++..+++.++.|+++...|..++..++++|+.
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~ 143 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQT 143 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555555555543
No 149
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=51.92 E-value=2.1e+02 Score=31.92 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=32.2
Q ss_pred hhHHHHHHH-HHHHHHHhHHHHHhhHHHHHHHHH-----H--HHHHHHHHHHhHHHHHHhhhhc
Q 003071 79 RCREKQRKE-ASRLQAVNRKLTAMNKLLMEENDR-----L--QKQVSQLVYENTFFRQQTQNAA 134 (850)
Q Consensus 79 Rak~Krr~~-~~~l~~~n~~l~a~n~~l~ee~~~-----l--~~~~~~L~~En~~Lk~el~~~~ 134 (850)
|+|.|.-.. -.....+-..|+....+|+|+.-+ . +..+++-|.|..+|||=++.+.
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMR 137 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666664221 112224455677777777777632 2 2234566777778888777664
No 150
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=51.86 E-value=30 Score=39.45 Aligned_cols=49 Identities=10% Similarity=0.046 Sum_probs=40.4
Q ss_pred HHHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCcccccc
Q 003071 734 SILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIF 784 (850)
Q Consensus 734 ~~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sa 784 (850)
..++.+++ .|++|+..+ ++-.+.|.|.+|.++|+++|++..+.+.....
T Consensus 98 ~~~~~~~~~~~~~i~~~d--~~g~i~~~N~~a~~l~g~~~~~~~g~~~~~~~ 147 (430)
T PRK11006 98 KRFRSGAESLPDAVVLTT--EEGNIFWCNGLAQQLLGFRWPEDNGQNILNLL 147 (430)
T ss_pred HHHHHHHHhCCCeEEEEc--CCCceeHHHHHHHHHhCCCChHhCCCcHHHHh
Confidence 45677774 799999988 46789999999999999999999888765443
No 151
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=51.50 E-value=51 Score=31.50 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=24.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 97 KLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 97 ~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
.+-.+-..|+.....+-.+-..|+.||+.||+.+.+.
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666677788888888777765
No 152
>PRK13560 hypothetical protein; Provisional
Probab=50.82 E-value=1.1e+02 Score=37.51 Aligned_cols=107 Identities=12% Similarity=0.081 Sum_probs=61.9
Q ss_pred HHHhh-cCCCeEeecCCCCCceeEcc-cHHHHHhhccCHHHhhcCccccccCccchhHH------------------hhh
Q 003071 736 LKTLW-HHSDAVLCCSLKALPVFTFA-NQAGLDMLETTLVALQDITLEKIFDDSGRKTL------------------CSE 795 (850)
Q Consensus 736 ~~~l~-~ap~avl~h~~~~dP~f~ya-N~aaL~l~e~~w~~l~~lpsr~sae~~~r~er------------------~~l 795 (850)
++.++ ++|.+|+..+. +-.+.|. |.++.++|+++.+++.+.+..... +..+++. ...
T Consensus 334 l~~l~~~~~~~i~~~d~--~g~i~~~nn~~~~~~~G~~~~e~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (807)
T PRK13560 334 LRAIIEAAPIAAIGLDA--DGNICFVNNNAAERMLGWSAAEVMGKPLPGMD-PELNEEFWCGDFQEWYPDGRPMAFDACP 410 (807)
T ss_pred HHHHHHhCcccEEEEcC--CCCEEEecCHHHHHHhCCCHHHHcCCCccccC-hhhhhhhhhchhhhcCCcCCcchhhhhh
Confidence 44556 36888887765 4456665 677778999999999997753222 1111111 001
Q ss_pred hHHHHHhccccCCCeeE-EccCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 796 FPQIMQQGFMCLQSGIC-LSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 796 L~~v~~qG~~~~y~GvR-iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
+.+..++|-.....-++ ..+.|..+++. ..+-.+.|++|...|.-.++.+
T Consensus 411 ~~~~~~~~~~~~~~e~~~~~~~g~~~~~~-~~~~p~~d~~g~~~~~~~~~~D 461 (807)
T PRK13560 411 MAKTIKGGKIFDGQEVLIEREDDGPADCS-AYAEPLHDADGNIIGAIALLVD 461 (807)
T ss_pred HHHHHhcCCcccCceEEEEcCCCCeEEEE-EEEeeeECCCCCEEEEEEEeeh
Confidence 22334444432222233 34567666653 3455678999998887666543
No 153
>PRK10884 SH3 domain-containing protein; Provisional
Probab=50.02 E-value=66 Score=34.17 Aligned_cols=40 Identities=18% Similarity=-0.012 Sum_probs=27.0
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 003071 93 AVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQN 132 (850)
Q Consensus 93 ~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~ 132 (850)
+....|+.+|+.+++++..++.+...|+.||..+++....
T Consensus 132 ~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~ 171 (206)
T PRK10884 132 SVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIM 171 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344577777777777777777777777777777766543
No 154
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=50.00 E-value=3.5e+02 Score=28.88 Aligned_cols=57 Identities=21% Similarity=0.346 Sum_probs=38.4
Q ss_pred CCCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhccc
Q 003071 421 FTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADS 497 (850)
Q Consensus 421 s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l 497 (850)
-..++|..... .+||.|..++++. .+|. |-=+- ..+ +.-|+.|+||+.+ +|.+||..
T Consensus 20 ~~~~~Wkl~k~--~~~~~v~~k~~~e--f~gk-------------l~R~E--gvv-~~~~~ev~d~v~~~~~r~~Wd~~ 78 (202)
T cd08902 20 ILEEEWRVAKK--SKDVTVWRKPSEE--FGGY-------------LYKAQ--GVV-EDVYNRIVDHIRPGPYRLDWDSL 78 (202)
T ss_pred ccccCcEEEEe--CCCEEEEEecCCc--CCCc-------------eEEEE--EEe-cCCHHHHHHHHhcccchhcccch
Confidence 36789986643 3889999987752 2221 21111 122 5788999999998 89999964
No 155
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=48.61 E-value=48 Score=35.68 Aligned_cols=64 Identities=19% Similarity=0.366 Sum_probs=45.6
Q ss_pred hhccCCCCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEE-EEEeecccccCChHHHHHHHhh--hch
Q 003071 416 EALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVL-CAKASMLLQDVPPAILLRFLRE--HRS 492 (850)
Q Consensus 416 ~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl-~A~tS~wL~pvpp~~lf~FLRd--~R~ 492 (850)
-+.-+-..++|..... .++|+|-.|...+ .|+++ .-++..-++.++++.++++|.| .|.
T Consensus 18 ~~~~~~~~~~W~l~~~--~~gikVy~r~~~~----------------sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~ 79 (235)
T cd08872 18 YALEDVGADGWQLFAE--EGEMKVYRREVEE----------------DGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRM 79 (235)
T ss_pred HHHccCCCCCCEEEEe--CCceEEEEEECCC----------------CCceeeeEEEEEEECCCCHHHHHHHHhChhhHH
Confidence 3444556668987653 5679998877641 12332 3577777866999999999998 899
Q ss_pred hhccc
Q 003071 493 EWADS 497 (850)
Q Consensus 493 eWd~l 497 (850)
+||..
T Consensus 80 ~Wd~~ 84 (235)
T cd08872 80 DWETT 84 (235)
T ss_pred HHHhh
Confidence 99963
No 156
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=48.43 E-value=54 Score=31.01 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=25.6
Q ss_pred eeEEeeChhhHHHHhcCchhhhhhCC--cceEEe
Q 003071 224 CGLVGLDPTRVAEILKDRPSWYRDCR--SVEVVN 255 (850)
Q Consensus 224 ~glV~m~~~~LVe~lmD~~~W~~~f~--~~~~l~ 255 (850)
+.+|.-.+..+-++|-|.++|-+..| .++++.
T Consensus 4 s~~i~ap~~~V~~~l~D~~~~p~~~p~~~~~~~~ 37 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAERWPEFLPTVHVERLE 37 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHhhhccCCCceEEEEE
Confidence 45667789999999999999999778 455544
No 157
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=47.63 E-value=50 Score=39.49 Aligned_cols=30 Identities=37% Similarity=0.465 Sum_probs=14.2
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhH
Q 003071 95 NRKLTAMNKLLMEENDRLQKQVSQLVYENT 124 (850)
Q Consensus 95 n~~l~a~n~~l~ee~~~l~~~~~~L~~En~ 124 (850)
-.++.++|+.|+.|+..|..++..|..||.
T Consensus 311 Lq~ll~Ene~Lk~ENatLk~qL~~l~~En~ 340 (655)
T KOG4343|consen 311 LQALLSENEQLKKENATLKRQLDELVSENQ 340 (655)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhcCc
Confidence 334444455555555444444444444443
No 158
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=47.46 E-value=66 Score=31.02 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=24.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 97 KLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 97 ~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
.+-.+-..|+.....+-.|-..|+.||..||+.+.++
T Consensus 19 ~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 19 VLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455566666666666677888888888888765
No 159
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=45.23 E-value=30 Score=29.73 Aligned_cols=31 Identities=29% Similarity=0.357 Sum_probs=23.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 003071 100 AMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (850)
Q Consensus 100 a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el 130 (850)
.+-+.+++.+..|+.+..+|..||..||+..
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456777777788888888888888888753
No 160
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=44.66 E-value=46 Score=28.84 Aligned_cols=28 Identities=25% Similarity=0.346 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 106 MEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 106 ~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
+.+...++.+..+++.||..|+++++++
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555555555555555554
No 161
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=44.52 E-value=1.7e+02 Score=24.20 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Q 003071 104 LLMEENDRLQKQVSQLVYENTFFRQ 128 (850)
Q Consensus 104 ~l~ee~~~l~~~~~~L~~En~~Lk~ 128 (850)
.+..+...|+.+..+|+.+++.|+.
T Consensus 29 ~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 29 ELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444444444445555555544
No 162
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=43.46 E-value=2.3e+02 Score=26.28 Aligned_cols=109 Identities=19% Similarity=0.206 Sum_probs=61.7
Q ss_pred ceeEEeeChhhHHHHhcCchhhhhhCCcceEEeeccCCCcchHHHHHHHhhccccccCCceeeEEeeceeeCCCcEEEEE
Q 003071 223 ACGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCE 302 (850)
Q Consensus 223 ~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvD 302 (850)
.+-.|...+.++.+.|.|.+.|.+.+|.+.-+.+...+.+|.-.. ..+.+ ...+.++-+.++|...- .... -..
T Consensus 6 ~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~-~~~i-~~~ 79 (140)
T cd07819 6 REFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEM--VRIGV--GAYGIKDTYALEYTWDG-AGSV-SWT 79 (140)
T ss_pred EEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEE--EEEEE--eeeeEEEEEEEEEEEcC-CCcE-EEE
Confidence 455677889999999999999999999876666554444332111 11111 22244555555665432 2221 111
Q ss_pred eecCCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccC
Q 003071 303 RSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEP 352 (850)
Q Consensus 303 vSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~ 352 (850)
. .++ . .+.... .-.-+++.++ +|+|||.-+++..-
T Consensus 80 ~-~~~---~-------~~~~~~---~~~~~~~~~~-~t~vt~~~~~~~~~ 114 (140)
T cd07819 80 L-VEG---E-------GNRSQE---GSYTLTPKGD-GTRVTFDLTVELTV 114 (140)
T ss_pred E-ecc---c-------ceeEEE---EEEEEEECCC-CEEEEEEEEEEecC
Confidence 1 111 0 011111 2356788877 59999999998743
No 163
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=43.39 E-value=43 Score=31.79 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 105 LMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 105 l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
++++...++.+.++|+.+|+.|++|++++
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444455555555555555544
No 164
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=43.06 E-value=1.2e+02 Score=36.49 Aligned_cols=102 Identities=15% Similarity=0.189 Sum_probs=67.7
Q ss_pred HHHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeE
Q 003071 734 SILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC 812 (850)
Q Consensus 734 ~~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 812 (850)
...+++++ -|++|++.|.+. ...|.|++|.++|+++=+++.+.|-.--.... .+.++.++|-.. .....
T Consensus 80 ~~L~aIL~sm~eGVi~vD~~G--~I~~iN~aA~~Llg~~~eel~Gk~i~eli~~~-------~l~~~le~~~~~-~~~~~ 149 (520)
T PRK10820 80 RALSALLEALPEPVLSIDMKG--KVELANPASCQLFGQSEEKLRNHTAAQLINGF-------NFLRWLESEPQD-SHNEH 149 (520)
T ss_pred HHHHHHHHhCCCcEEEECCCC--eeeHhHHHHHHHHCcCHHHHCCCcHHHHcCcc-------hHHHHHHcCCCc-cceEE
Confidence 34566675 699999999865 59999999999999998888887765443322 244566666542 22356
Q ss_pred EccCCCcEEEeeeEEeEeecCCCce--EEEEEeccc
Q 003071 813 LSSMGRPISYERAVAWKVLNEEENA--HCICFMFIN 846 (850)
Q Consensus 813 iss~Grrf~i~~a~vW~l~d~~g~~--~gqAa~F~~ 846 (850)
+...|+.|.++-.-+. +.|++|.. .|.-.+|.+
T Consensus 150 v~~~g~~~~v~~~PI~-~~d~~g~~~~~GaVivlrd 184 (520)
T PRK10820 150 VVINGQDFLMEITPVY-LQDENDQHVLVGAVVMLRS 184 (520)
T ss_pred EEECCEEEEEEEEeee-ecCCCCceeEEEEEEEecc
Confidence 6677887776543332 22666664 677666643
No 165
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=42.91 E-value=1.1e+02 Score=38.08 Aligned_cols=96 Identities=17% Similarity=0.268 Sum_probs=54.9
Q ss_pred cCChHHHHHHHhh---hchhhcccccchhhHhhhhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEeeccccccc
Q 003071 477 DVPPAILLRFLRE---HRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYRE 553 (850)
Q Consensus 477 pvpp~~lf~FLRd---~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~ 553 (850)
+.+|+.||++|-+ .|.|||.. +++ | +.+-+| +...+|.--++...-. -
T Consensus 236 ~aspE~Ifd~Vm~~~~~R~eWD~~---------~~~----------~----~vIE~I----D~htdI~Y~~~~~~~~--~ 286 (719)
T PLN00188 236 EATCEEIFELVMSMDGTRFEWDCS---------FQY----------G----SLVEEV----DGHTAILYHRLQLDWF--P 286 (719)
T ss_pred cCCHHHHHHHHhccCcccccchhc---------ccc----------e----EEEEEe----cCCeEEEEEEeccccc--c
Confidence 7899999999974 89999964 111 2 333333 3333444334321100 0
Q ss_pred cCCCCCceEEEeeccCCCCCCCCceeEEE-EeeccCCC----CCCC--CccCCccEEecC
Q 003071 554 DMIMPSDIFLLQLCSGVDENAVGNCAELV-FAPIDASF----SDDA--PIIPSGFRIIPL 606 (850)
Q Consensus 554 ~~~~~~~~liLQe~~~~De~~~G~~s~vV-yAPvD~~d----s~~v--~LLPSGF~IlP~ 606 (850)
.-+-+||-.++.-- .-+ -.| +|++ |-+|.-.. +.+| -+-|+||.|.|+
T Consensus 287 ~~ispRDFV~~Ryw-rr~--eDG--sYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL 341 (719)
T PLN00188 287 MFVWPRDLCYVRYW-RRN--DDG--SYVVLFRSREHENCGPQPGFVRAHLESGGFNISPL 341 (719)
T ss_pred CccCcceeEEEEEE-EEc--CCC--cEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEEC
Confidence 12445677777752 233 355 4554 55666542 3343 378999999996
No 166
>PRK10724 hypothetical protein; Provisional
Probab=42.12 E-value=1.8e+02 Score=29.36 Aligned_cols=134 Identities=10% Similarity=0.166 Sum_probs=73.2
Q ss_pred cceeEEeeChhhHHHHhcCchhhhhhCCcceEEeeccCCCcchHHHHHHHhhccccccCCceeeEEeeceeeCCCcEEEE
Q 003071 222 RACGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVC 301 (850)
Q Consensus 222 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVv 301 (850)
+.+.+|.-.+..+.+.+.|.++|-+..|-..-..++....++ +.+++.+--.- ..+-+.-|+.-. .++ .+.+
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~----~~a~l~v~~~g--~~~~f~srv~~~-~~~-~I~~ 89 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQ----MTAAVDVSKAG--ISKTFTTRNQLT-SNQ-SILM 89 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCE----EEEEEEEeeCC--ccEEEEEEEEec-CCC-EEEE
Confidence 556788889999999999999999988754333333222233 23444332222 233333333332 233 3222
Q ss_pred EeecCCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCCCccccchhhhchhHHH--HHHHHHHHHH
Q 003071 302 ERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLI--AQKTTMAALR 379 (850)
Q Consensus 302 DvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyRpl~~Sg~af--gar~w~~aLr 379 (850)
..+++ + ... +=.-.-+++.++|.|+|+.--+.|+.. .||.+++ +..| .++..+.|.+
T Consensus 90 -~~~~G----p----F~~------l~g~W~f~p~~~~~t~V~~~l~fef~s----~l~~~~~--~~~~~~~~~~mv~AF~ 148 (158)
T PRK10724 90 -QLVDG----P----FKK------LIGGWKFTPLSQEACRIEFHLDFEFTN----KLIELAF--GRVFKELASNMVQAFT 148 (158)
T ss_pred -EecCC----C----hhh------ccceEEEEECCCCCEEEEEEEEEEEch----HHHHHHH--HHHHHHHHHHHHHHHH
Confidence 22222 1 112 333344678887889999988888542 3444444 3333 5566666653
Q ss_pred -HHhhh
Q 003071 380 -HLRQI 384 (850)
Q Consensus 380 -~~e~l 384 (850)
.++.+
T Consensus 149 ~Ra~~~ 154 (158)
T PRK10724 149 VRAKEV 154 (158)
T ss_pred HHHHHH
Confidence 35443
No 167
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=41.78 E-value=1.2e+02 Score=26.88 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=10.0
Q ss_pred HHHHHHHHHhHHHHHHhh
Q 003071 114 KQVSQLVYENTFFRQQTQ 131 (850)
Q Consensus 114 ~~~~~L~~En~~Lk~el~ 131 (850)
.+..+|+.|+..|++|++
T Consensus 47 ~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 47 EENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344456666666666554
No 168
>PRK10884 SH3 domain-containing protein; Provisional
Probab=41.77 E-value=86 Score=33.30 Aligned_cols=36 Identities=19% Similarity=0.107 Sum_probs=20.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 98 LTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 98 l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
.......+++++.++..++++++.|+..|+.|++..
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444456666666666666666666666665554
No 169
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=41.14 E-value=40 Score=37.99 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=20.5
Q ss_pred EEEEeeccCC----------CCCCCCccCCccEEecCCC
Q 003071 580 ELVFAPIDAS----------FSDDAPIIPSGFRIIPLDS 608 (850)
Q Consensus 580 ~vVyAPvD~~----------ds~~v~LLPSGF~IlP~~~ 608 (850)
++|.-||-.+ .+=+|-.=|-|.-|-|-++
T Consensus 337 ~~isg~v~~sit~l~~~~~l~~~~i~f~~~g~~v~~~g~ 375 (420)
T PF07407_consen 337 YFISGPVGPSITCLMKTYALYSVEIVFGEKGLYVRPTGS 375 (420)
T ss_pred ceEeccccchHHHHHHHhhhheeEEEEcCCceEEeccCC
Confidence 5777777765 3556777788888888543
No 170
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.84 E-value=78 Score=37.61 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=33.1
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 003071 87 EASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQN 132 (850)
Q Consensus 87 ~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~ 132 (850)
+...++.+-++++.+.+.+......++.++++|..||++|+++++.
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555566666666666677888888999999999999864
No 171
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=40.55 E-value=1.4e+02 Score=26.48 Aligned_cols=41 Identities=22% Similarity=0.230 Sum_probs=29.8
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 93 AVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 93 ~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
..+......++.+..+.+....+++....+|..|++|++.+
T Consensus 19 rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L 59 (69)
T PF14197_consen 19 RKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEAL 59 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555667777777777777888888888888888765
No 172
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=40.32 E-value=87 Score=34.95 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003071 79 RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVY 121 (850)
Q Consensus 79 Rak~Krr~~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~ 121 (850)
|-|.|||.+...+..+-..|...|+.||+...++++|++.|+.
T Consensus 241 RYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 241 RYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666677888888888888888888776665
No 173
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=40.25 E-value=64 Score=36.43 Aligned_cols=30 Identities=30% Similarity=0.314 Sum_probs=20.1
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHHHH
Q 003071 87 EASRLQAVNRKLTAMNKLLMEENDRLQKQV 116 (850)
Q Consensus 87 ~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~ 116 (850)
+...|+++|.+|++||+.|+.+.++|+.+.
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~ 62 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENEM 62 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777777777766665543
No 174
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=39.00 E-value=85 Score=34.29 Aligned_cols=47 Identities=15% Similarity=0.187 Sum_probs=34.2
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhccc
Q 003071 90 RLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNAATL 136 (850)
Q Consensus 90 ~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~~~~ 136 (850)
+.++.|..|..+.....+++..++.|+..|+.+|-+|-+.+.=+.+.
T Consensus 90 RFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY 136 (248)
T PF08172_consen 90 RFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSY 136 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34445566777777777777788888888888888888887666444
No 175
>PF15058 Speriolin_N: Speriolin N terminus
Probab=38.02 E-value=60 Score=34.15 Aligned_cols=37 Identities=30% Similarity=0.349 Sum_probs=26.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhc
Q 003071 97 KLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNAA 134 (850)
Q Consensus 97 ~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~~ 134 (850)
-++...+++..||++|+|++. |..||..||.-|...|
T Consensus 9 GlrhqierLv~ENeeLKKlVr-LirEN~eLksaL~ea~ 45 (200)
T PF15058_consen 9 GLRHQIERLVRENEELKKLVR-LIRENHELKSALGEAC 45 (200)
T ss_pred HHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 345556677778888888775 7778999988776654
No 176
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=37.96 E-value=91 Score=33.47 Aligned_cols=16 Identities=38% Similarity=0.146 Sum_probs=6.7
Q ss_pred HhHHHHHhhHHHHHHH
Q 003071 94 VNRKLTAMNKLLMEEN 109 (850)
Q Consensus 94 ~n~~l~a~n~~l~ee~ 109 (850)
++++..++.+.++++.
T Consensus 152 ~~~~~~~~~~kL~~el 167 (216)
T KOG1962|consen 152 ENDKLKADLEKLETEL 167 (216)
T ss_pred hHHHHHhhHHHHHHHH
Confidence 3344444444444443
No 177
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=37.88 E-value=64 Score=27.15 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 110 DRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 110 ~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
....+++.+|..||..|+.+|++.
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788999999999999875
No 178
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=37.82 E-value=94 Score=36.92 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhCCCCCC
Q 003071 709 TLARWICQSYRCYLGAELLK 728 (850)
Q Consensus 709 ~~~~~l~~Sy~~~~G~~L~~ 728 (850)
+.+.|+-+-|...|..=.+|
T Consensus 426 e~adW~~krygqsFdAVyVp 445 (472)
T TIGR03752 426 EVADWVNKRYGQSFDAVYVP 445 (472)
T ss_pred HHHHHHHHHhhccccEEEeC
Confidence 45555555555555443343
No 179
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=37.54 E-value=1.3e+02 Score=31.01 Aligned_cols=48 Identities=25% Similarity=0.308 Sum_probs=24.6
Q ss_pred HHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 86 KEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 86 ~~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
+++..++.++.+++..|+.|.+++.+++++.+.+..+...|-.-++|+
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RA 151 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555554444443
No 180
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=37.17 E-value=1.5e+02 Score=26.14 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=19.0
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 003071 94 VNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (850)
Q Consensus 94 ~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~ 131 (850)
....++.+|..++++...+..+-.+|...|..-+..++
T Consensus 15 ~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 15 YLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544555555544444444
No 181
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=37.11 E-value=85 Score=27.85 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 104 LLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 104 ~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
.+..+..+++.+..+++.||..|+.|+.++
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666667777777777777665
No 182
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=36.70 E-value=76 Score=32.91 Aligned_cols=67 Identities=21% Similarity=0.459 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHHH
Q 003071 405 ALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILL 484 (850)
Q Consensus 405 kLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~lf 484 (850)
++.|.|..-+.. .++|.... ..++|+|..++..+ -.+-+ .++..-+ |.+|+.||
T Consensus 9 ~~~~~~~~~~~~------~~~W~~~~--~~~~i~v~~~~~~~---------------~~~~~--~k~~~~i-~~~~~~v~ 62 (206)
T cd08867 9 KLANEALQYIND------TDGWKVLK--TVKNITVSWKPSTE---------------FTGHL--YRAEGIV-DALPEKVI 62 (206)
T ss_pred HHHHHHHHHhcC------cCCcEEEE--cCCCcEEEEecCCC---------------CCCEE--EEEEEEE-cCCHHHHH
Confidence 444555554442 27898774 34689999875431 01212 3555667 79999999
Q ss_pred HHHhh----hchhhccc
Q 003071 485 RFLRE----HRSEWADS 497 (850)
Q Consensus 485 ~FLRd----~R~eWd~l 497 (850)
++|.| .|.+||..
T Consensus 63 ~~l~d~~~~~r~~Wd~~ 79 (206)
T cd08867 63 DVIIPPCGGLRLKWDKS 79 (206)
T ss_pred HHHHhcCcccccccccc
Confidence 99997 79999953
No 183
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=36.39 E-value=1.1e+02 Score=31.77 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=27.7
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 003071 87 EASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (850)
Q Consensus 87 ~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~ 131 (850)
....|.+.|.-|+...+..+.+|+.|..++++|..+-.++++|+.
T Consensus 75 R~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 75 RSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666666666666666666666666655
No 184
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=35.84 E-value=87 Score=29.97 Aligned_cols=41 Identities=27% Similarity=0.328 Sum_probs=31.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhcccc
Q 003071 97 KLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNAATLA 137 (850)
Q Consensus 97 ~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~~~~~ 137 (850)
.+...-..+-++...|+.++..|..||+.|+-|.+.+...+
T Consensus 12 ~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566667778888899999999999999988775543
No 185
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=35.56 E-value=2e+02 Score=25.40 Aligned_cols=43 Identities=23% Similarity=0.161 Sum_probs=33.9
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 91 LQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 91 l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
+...-+.|-..+..++++|..|..++..+..|++.|.+..+.+
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~A 47 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQA 47 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556777788888899888888888999998888887754
No 186
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.52 E-value=1.3e+02 Score=34.29 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 003071 82 EKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (850)
Q Consensus 82 ~Krr~~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~ 131 (850)
+|.+++-..+..+.+.+++..+.+++-..+|+.+++.|..|...|+..++
T Consensus 221 ~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niD 270 (365)
T KOG2391|consen 221 RRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNID 270 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34444555566666667666666666666665555555555555555444
No 187
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=34.42 E-value=1.2e+02 Score=31.93 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=23.1
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 91 LQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 91 l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
++..+.++.+.++.+.+++..|..+++.|+.||.++..+.+.+
T Consensus 79 lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~l 121 (193)
T PF14662_consen 79 LEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGL 121 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhH
Confidence 3344445555555555555555555556666666655555443
No 188
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=34.10 E-value=1.3e+02 Score=31.58 Aligned_cols=32 Identities=34% Similarity=0.393 Sum_probs=18.7
Q ss_pred cchhHHHHHHHHHHHHHHhHHHHHhhHHHHHHH
Q 003071 77 NRRCREKQRKEASRLQAVNRKLTAMNKLLMEEN 109 (850)
Q Consensus 77 NRRak~Krr~~~~~l~~~n~~l~a~n~~l~ee~ 109 (850)
|||.+.-- .+...++..|.+|..+|+.|++..
T Consensus 47 NrrlQ~hl-~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 47 NRRLQQHL-NEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554332 344456666777777777776554
No 189
>COG2202 AtoS FOG: PAS/PAC domain [Signal transduction mechanisms]
Probab=34.05 E-value=3.4e+02 Score=24.14 Aligned_cols=77 Identities=12% Similarity=-0.031 Sum_probs=50.9
Q ss_pred cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhH--HhhhhHHHHHhccccCCCeeEEccCCC
Q 003071 741 HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKT--LCSEFPQIMQQGFMCLQSGICLSSMGR 818 (850)
Q Consensus 741 ~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~e--r~~lL~~v~~qG~~~~y~GvRiss~Gr 818 (850)
..|..++..+. +-.+.|.|+++.++++++-.+....+............ ...........+.........+...|+
T Consensus 120 ~~~~~~~~~d~--~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 197 (232)
T COG2202 120 ASPDGIWVLDE--DGRILYANPAAEELLGYSPEEELGRGLSDLIHPEDEERRELELARALAEGRGGPLEIEYRVRRKDGE 197 (232)
T ss_pred hCCceEEEEeC--CCCEEEeCHHHHHHhCCChHHhcCCChhheEecCCCchhhHHHHHHhhccCCCCcceEEEEEecCCC
Confidence 46778777776 88899999999999999988888666555544333221 222222233344445556667778888
Q ss_pred c
Q 003071 819 P 819 (850)
Q Consensus 819 r 819 (850)
+
T Consensus 198 ~ 198 (232)
T COG2202 198 R 198 (232)
T ss_pred E
Confidence 6
No 190
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=33.57 E-value=52 Score=32.11 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 109 NDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 109 ~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
+++|..++++|+.||-.||+++.+-
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4668889999999999999999875
No 191
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=33.46 E-value=1.9e+02 Score=26.49 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 85 RKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 85 r~~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
+.+-..++..|..+..+++.++.....|..+-++|+.|....++.+..+
T Consensus 24 qmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 24 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777888877777777777777788888877777666543
No 192
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=31.72 E-value=1.1e+02 Score=28.23 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=25.7
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhccc
Q 003071 93 AVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNAATL 136 (850)
Q Consensus 93 ~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~~~~ 136 (850)
.+|..|+.+.+.|++..++ ..++.+...||-+|++|+.+.-++
T Consensus 24 ~e~~~L~eEI~~Lr~qve~-nPevtr~A~EN~rL~ee~rrl~~f 66 (86)
T PF12711_consen 24 EENEALKEEIQLLREQVEH-NPEVTRFAMENIRLREELRRLQSF 66 (86)
T ss_pred HHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443332 224567888999999999887443
No 193
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=31.42 E-value=1.7e+02 Score=34.33 Aligned_cols=46 Identities=22% Similarity=0.198 Sum_probs=36.9
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 88 ASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 88 ~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
.+.+..++..++++.+.++..+...+.++++|+.||.+|.+|.-+.
T Consensus 29 ~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~ 74 (459)
T KOG0288|consen 29 QSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVRE 74 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778888888888888888888899999999988887663
No 194
>PHA03162 hypothetical protein; Provisional
Probab=31.29 E-value=55 Score=32.40 Aligned_cols=25 Identities=16% Similarity=0.384 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 109 NDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 109 ~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
+++|..|+++|+.||..||+++.+-
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4668889999999999999999653
No 195
>PHA03155 hypothetical protein; Provisional
Probab=31.18 E-value=56 Score=31.62 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 109 NDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 109 ~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
.++|..++++|+.||..||+++.+-
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~~ 34 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQH 34 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4568899999999999999998653
No 196
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.76 E-value=2.1e+02 Score=25.63 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=30.6
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 003071 87 EASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQN 132 (850)
Q Consensus 87 ~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~ 132 (850)
+-..++..|..+..+-...+...+.|+.+-++|+.|....++.+..
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666666666677777777777777766666553
No 197
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=30.48 E-value=1e+02 Score=34.22 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=24.9
Q ss_pred HHHHHhhHHHHHHHHH---HHHHHHHHHHHhHHHHHHhhhh
Q 003071 96 RKLTAMNKLLMEENDR---LQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 96 ~~l~a~n~~l~ee~~~---l~~~~~~L~~En~~Lk~el~~~ 133 (850)
..+..+|+.+++++.+ ...+.++|+.||.+||+.+.-.
T Consensus 69 ~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~ 109 (284)
T COG1792 69 KDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDFK 109 (284)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3445555556655533 3556677999999999888654
No 198
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=30.25 E-value=4.3e+02 Score=24.15 Aligned_cols=37 Identities=16% Similarity=-0.018 Sum_probs=28.7
Q ss_pred eeEEeeChhhHHHHhcCchhhhhhCCcceEEeeccCC
Q 003071 224 CGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPTG 260 (850)
Q Consensus 224 ~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g 260 (850)
+..|...+.++-++|-|.++|.+-.|.+..+...+.+
T Consensus 4 ~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~ 40 (140)
T cd08865 4 SIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDG 40 (140)
T ss_pred EEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCC
Confidence 4456678899999999999999988887666655433
No 199
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=29.83 E-value=2.6e+02 Score=25.59 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=26.7
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 91 LQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 91 l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
+..+-..|+.....|....+..+.+-.+|+.||..|++=+.-+
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455555555566666677888888888777655
No 200
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=29.61 E-value=1.3e+02 Score=29.07 Aligned_cols=40 Identities=28% Similarity=0.330 Sum_probs=29.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhccc
Q 003071 97 KLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNAATL 136 (850)
Q Consensus 97 ~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~~~~ 136 (850)
.+...-..+-+++..|+.++..|..||+.|+-|.+.+...
T Consensus 12 ~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~ 51 (110)
T PRK13169 12 DLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRER 51 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777888888899999999999887766433
No 201
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=29.14 E-value=1.7e+02 Score=28.11 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=14.7
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003071 93 AVNRKLTAMNKLLMEENDRLQKQVSQLVY 121 (850)
Q Consensus 93 ~~n~~l~a~n~~l~ee~~~l~~~~~~L~~ 121 (850)
+.|.+...+.+.+.+..+.+..+..+...
T Consensus 73 ~inl~ae~ei~~l~~~l~~l~~~~~~~~~ 101 (108)
T PF06210_consen 73 QINLKAEQEIERLHRKLDALREKLGELLE 101 (108)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33555555556666555555544443333
No 202
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=28.81 E-value=4.6e+02 Score=24.04 Aligned_cols=32 Identities=25% Similarity=0.185 Sum_probs=25.3
Q ss_pred ceeEEeeChhhHHHHhcCchhhhhhCCcceEE
Q 003071 223 ACGLVGLDPTRVAEILKDRPSWYRDCRSVEVV 254 (850)
Q Consensus 223 ~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l 254 (850)
.+.+|...+.++-+.|.|...|.+.++.+...
T Consensus 4 ~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~ 35 (141)
T cd07822 4 TEIEINAPPEKVWEVLTDFPSYPEWNPFVRSA 35 (141)
T ss_pred EEEEecCCHHHHHHHHhccccccccChhheeE
Confidence 35567778999999999999998888765433
No 203
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=28.79 E-value=4.6e+02 Score=24.04 Aligned_cols=35 Identities=29% Similarity=0.348 Sum_probs=28.1
Q ss_pred eeEEeeChhhHHHHhcCchhhhhhCCcceEEeecc
Q 003071 224 CGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLP 258 (850)
Q Consensus 224 ~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~ 258 (850)
+-.|...+.++-+.|.|...|.+-+|.+..+....
T Consensus 7 ~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~ 41 (139)
T PF10604_consen 7 SIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLS 41 (139)
T ss_dssp EEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEE
T ss_pred EEEECCCHHHHHHHHhChhhhhhhhhceEEEEEcc
Confidence 45677889999999999999999899886666554
No 204
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=27.63 E-value=1.7e+02 Score=34.09 Aligned_cols=39 Identities=10% Similarity=0.137 Sum_probs=26.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhc
Q 003071 96 RKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNAA 134 (850)
Q Consensus 96 ~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~~ 134 (850)
..++.+++.+..+++.++.+..+++.|..++++|+.++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 25 KELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666676666777777777787777764
No 205
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=26.99 E-value=1.4e+02 Score=27.33 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhc
Q 003071 104 LLMEENDRLQKQVSQLVYENTFFRQQTQNAA 134 (850)
Q Consensus 104 ~l~ee~~~l~~~~~~L~~En~~Lk~el~~~~ 134 (850)
.+..+..+++++..+|+.||.+|+-|..+++
T Consensus 39 ~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 39 QLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344456677777777888888887777663
No 206
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=26.98 E-value=57 Score=26.57 Aligned_cols=37 Identities=32% Similarity=0.396 Sum_probs=13.6
Q ss_pred HhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 003071 94 VNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (850)
Q Consensus 94 ~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el 130 (850)
.|..+...|..+.-....++++..+|..||..||++.
T Consensus 8 qn~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 8 QNRELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3666777788888888889999999999999999875
No 207
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.41 E-value=1.7e+02 Score=32.05 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=33.5
Q ss_pred cccchhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHH----HHhHHHHHHhhhhcccc
Q 003071 75 FQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLV----YENTFFRQQTQNAATLA 137 (850)
Q Consensus 75 FQNRRak~Krr~~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~----~En~~Lk~el~~~~~~~ 137 (850)
|||.+.-.-++.+...+..++.++++....|..|.+.+++.+...+ ..++.|+++++.+.-.+
T Consensus 39 ~q~~k~~~~~~~r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~a 105 (247)
T COG3879 39 FQTSKGESVRRARDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLA 105 (247)
T ss_pred HhhccCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHh
Confidence 3443333333333335555555555555566666666666555555 33566777777764333
No 208
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=26.16 E-value=1.6e+02 Score=30.84 Aligned_cols=73 Identities=16% Similarity=0.200 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHH
Q 003071 403 LRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAI 482 (850)
Q Consensus 403 l~kLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~ 482 (850)
-.++++.....|-.-.+ ..++|.... .+.++++|.++...+ .| ---++-.-+ |+|++.
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~~W~~~~-~~~~gi~v~s~~~~~----------------~~--k~~k~e~~i-~~~~~~ 63 (209)
T cd08905 6 YIKQGEEALQKSLSILQ--DQEGWKTEI-VAENGDKVLSKVVPD----------------IG--KVFRLEVVV-DQPLDN 63 (209)
T ss_pred HHHHHHHHHHHHHHHhc--cccCCEEEE-ecCCCCEEEEEEcCC----------------CC--cEEEEEEEe-cCCHHH
Confidence 34455555555554442 456898763 235667888755431 02 233445667 899999
Q ss_pred HHHHHhh---hchhhccc
Q 003071 483 LLRFLRE---HRSEWADS 497 (850)
Q Consensus 483 lf~FLRd---~R~eWd~l 497 (850)
||++|.+ .+.+|+..
T Consensus 64 l~~~l~~d~e~~~~W~~~ 81 (209)
T cd08905 64 LYSELVDRMEQMGEWNPN 81 (209)
T ss_pred HHHHHHhchhhhceeccc
Confidence 9977774 89999974
No 209
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=25.83 E-value=4.8e+02 Score=24.75 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=33.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhccc
Q 003071 96 RKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNAATL 136 (850)
Q Consensus 96 ~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~~~~ 136 (850)
..|+...+...+|..-+.+.+.++..+|..|..||.+....
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~ 44 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSK 44 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777788888888888889999999999999998554
No 210
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=25.13 E-value=2.3e+02 Score=34.50 Aligned_cols=48 Identities=29% Similarity=0.287 Sum_probs=31.2
Q ss_pred HHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 86 KEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 86 ~~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
++...+...+..|+.++..+++++++++.++.+.+.++..|+++.+.+
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel 197 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKEL 197 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666777777777777777777666666666666666655543
No 211
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=25.11 E-value=2.2e+02 Score=27.33 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=19.7
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 003071 93 AVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (850)
Q Consensus 93 ~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el 130 (850)
..+..+....+.+.++.++++...+++..|...||+|+
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444555555555555555555555555555553
No 212
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=24.85 E-value=1e+02 Score=33.51 Aligned_cols=39 Identities=23% Similarity=0.171 Sum_probs=29.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhH---HHHHHhhhhccccc
Q 003071 100 AMNKLLMEENDRLQKQVSQLVYENT---FFRQQTQNAATLAT 138 (850)
Q Consensus 100 a~n~~l~ee~~~l~~~~~~L~~En~---~Lk~el~~~~~~~~ 138 (850)
.....+++|+++|++|..+|+.++. .+++|.+++..+..
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567788888888888888888877 56777777765543
No 213
>COG1415 Uncharacterized conserved protein [Function unknown]
Probab=24.64 E-value=2.9e+02 Score=31.84 Aligned_cols=124 Identities=17% Similarity=0.160 Sum_probs=79.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHH----------------------HHHHHHhCCCCCCCCCh----hHHHHHhhcCC
Q 003071 690 SRFGSNAGLRPPPGSPEAHTLARWIC----------------------QSYRCYLGAELLKCEGN----ESILKTLWHHS 743 (850)
Q Consensus 690 ~~~~~~~~~~~~~~~pe~~~~~~~l~----------------------~Sy~~~~G~~L~~~~~~----~~~~~~l~~ap 743 (850)
+.|..|.|-.+||.-+.+..|+..|+ |||-..+|.+-=.+++. ..+=+.|+.-.
T Consensus 7 AdLPLH~GhvP~wL~~rM~kLs~~i~elive~yG~~e~l~RlAdP~WFQsf~nviGmDW~SSGsTTv~~gaLK~~l~~~d 86 (373)
T COG1415 7 ADLPLHTGHVPPWLLPRMKKLSGAILELIVEEYGTDELLRRLADPFWFQSFNNVIGMDWDSSGSTTVTTGALKEALNPED 86 (373)
T ss_pred ccccccCCCCChHHHHHHHHHHHHHHHHHHHHhCcHHHHHHhcCcHHHHHHhhhhcccccCCCCeeeeHHHHHHhcCccc
Confidence 45788889999999999999888665 56666677665333321 22335677678
Q ss_pred CeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHH----HHHhccccCCC-eeEEccCCC
Q 003071 744 DAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQ----IMQQGFMCLQS-GICLSSMGR 818 (850)
Q Consensus 744 ~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~----v~~qG~~~~y~-GvRiss~Gr 818 (850)
..|..||+|.- .+.+| -+|+..+--+.-+++.+=.+-.++.++ +.|+|| ++|- ++=+|.+|+
T Consensus 87 lgi~V~GGKG~-----------~~~~t-p~El~~~ae~~~ld~~~l~~~SRlvAKvDn~~lQDGy-dLYhH~~vvse~G~ 153 (373)
T COG1415 87 LGIKVAGGKGR-----------NARKT-PDELESIAERFGLDAEKLVEASRLVAKVDNVLLQDGY-DLYHHTFVVSEDGR 153 (373)
T ss_pred CceEEecCcch-----------hhccC-hHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHhcch-hheeEEEEEcCCCC
Confidence 88888888731 11221 234444433444444444444444444 578999 6664 999999999
Q ss_pred cEEEeeeE
Q 003071 819 PISYERAV 826 (850)
Q Consensus 819 rf~i~~a~ 826 (850)
-.-|.++.
T Consensus 154 w~VIQQGM 161 (373)
T COG1415 154 WAVIQQGM 161 (373)
T ss_pred EEEEEcCc
Confidence 99988864
No 214
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.80 E-value=1.8e+02 Score=29.94 Aligned_cols=34 Identities=26% Similarity=0.323 Sum_probs=20.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 100 AMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 100 a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
.+++...+|.+++++++.+...|...||.|.+.+
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666666666666666554
No 215
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=23.27 E-value=1.7e+02 Score=33.44 Aligned_cols=38 Identities=18% Similarity=0.077 Sum_probs=20.5
Q ss_pred HHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 003071 89 SRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (850)
Q Consensus 89 ~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el 130 (850)
..++++|+.|+.+|..++.++.++ ++++.||..|++.+
T Consensus 60 ~~L~~EN~~Lk~Ena~L~~~l~~~----e~l~~En~~Lr~ll 97 (337)
T PRK14872 60 LVLETENFLLKERIALLEERLKSY----EEANQTPPLFSEIL 97 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhh
Confidence 345555666666666555544432 33556677666443
No 216
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=23.25 E-value=2.8e+02 Score=31.68 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhHHHHHHhh
Q 003071 113 QKQVSQLVYENTFFRQQTQ 131 (850)
Q Consensus 113 ~~~~~~L~~En~~Lk~el~ 131 (850)
+.-+.+++.||++|+-+++
T Consensus 133 E~li~~~~EEn~~lqlqL~ 151 (401)
T PF06785_consen 133 EGLIRHLREENQCLQLQLD 151 (401)
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 3334455555555544443
No 217
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=23.07 E-value=83 Score=26.44 Aligned_cols=36 Identities=25% Similarity=0.285 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHhHhcC--CCCCHHHHHHHHHhcCccCCCCcc
Q 003071 30 YTPEQVEALERLYHEC--PKPSSMRRQQLIRECPILSNIEPK 69 (850)
Q Consensus 30 ~T~~Ql~~LE~~F~~~--~~Ps~~~r~~LA~~L~~~~gL~~r 69 (850)
+|+.|.+.|...|... .+|-...-.+||.+| |+++.
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~l----gis~s 38 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEEL----GISKS 38 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHh----CCCHH
Confidence 5889999999999888 447777888999999 99874
No 218
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=22.48 E-value=3.1e+02 Score=29.58 Aligned_cols=44 Identities=27% Similarity=0.214 Sum_probs=24.9
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 90 RLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 90 ~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
.+..+-..+.++.+.++..++++++.+..++.+.+.|+++++.+
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555556666666666666666666654
No 219
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=22.29 E-value=2.5e+02 Score=33.14 Aligned_cols=13 Identities=38% Similarity=0.971 Sum_probs=9.4
Q ss_pred Eeec---ccchhHHHH
Q 003071 72 KVWF---QNRRCREKQ 84 (850)
Q Consensus 72 kvWF---QNRRak~Kr 84 (850)
-+|| |||.+|.+-
T Consensus 229 gcw~ay~Qnk~akehv 244 (575)
T KOG4403|consen 229 GCWFAYRQNKKAKEHV 244 (575)
T ss_pred hhhhhhhhhhHHHHHH
Confidence 4677 888888764
No 220
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=22.27 E-value=2.1e+02 Score=31.37 Aligned_cols=40 Identities=23% Similarity=0.214 Sum_probs=24.4
Q ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 003071 93 AVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQN 132 (850)
Q Consensus 93 ~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~ 132 (850)
+..+.++..|..|.+|+.++..+++.|+.|.+.||....+
T Consensus 86 sQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~k 125 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVK 125 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666655433
No 221
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=22.26 E-value=4.1e+02 Score=30.77 Aligned_cols=95 Identities=11% Similarity=0.056 Sum_probs=56.9
Q ss_pred HHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHH---HhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeE
Q 003071 737 KTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLV---ALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC 812 (850)
Q Consensus 737 ~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~---~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 812 (850)
+.+.+ .+++|+.-+. +=...|.|++|.++|+++-. +..+-+... -.....+.++.+.|-.. ....
T Consensus 224 ~~il~~~~~gIi~~D~--~g~I~~~N~~a~~llg~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~~~ 292 (542)
T PRK11086 224 QAMLQSIKEGVIAVDD--RGEVTLINDEAKRLFNYKKGLEDDPLGTDVES-------WMPVSRLKEVLRTGTPR--RDEE 292 (542)
T ss_pred HHHHHHhcCcEEEECC--CCeEEEEhHHHHHHhCCCcCCcccccCCcHHH-------hCCchhHHHHHhcCCCc--cceE
Confidence 34453 6888988775 66789999999999966521 222111111 11133456666666433 2334
Q ss_pred EccCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 813 LSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 813 iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
+...|+.+.+... .+.| +|...|.-.+|.+
T Consensus 293 ~~~~g~~~~~~~~---pi~~-~g~~~g~v~~~rD 322 (542)
T PRK11086 293 ININGRLLLTNTV---PVRV-NGEIIGAIATFRD 322 (542)
T ss_pred EEECCEEEEEEEE---EEeE-CCEEEEEEEEEEE
Confidence 4556777776543 3445 7888888777754
No 222
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=22.14 E-value=1.2e+02 Score=27.43 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=38.9
Q ss_pred HHHHHHhcCccCCCCcceEEeecccchhHHHH---------HHHHHHHHHHhHHHHH----hhHHHHHHHHHHHHHHHHH
Q 003071 53 RQQLIRECPILSNIEPKQIKVWFQNRRCREKQ---------RKEASRLQAVNRKLTA----MNKLLMEENDRLQKQVSQL 119 (850)
Q Consensus 53 r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr---------r~~~~~l~~~n~~l~a----~n~~l~ee~~~l~~~~~~L 119 (850)
..++|+.+ |++++.++.|-+...-+-.+ ...-..++. -..++. ..+.++ +.-.+..+.+.|
T Consensus 4 i~e~A~~~----gvs~~tLr~ye~~Gli~p~r~~~g~R~y~~~dv~~l~~-i~~L~~d~g~~l~~i~-~~l~l~~~~~~l 77 (91)
T cd04766 4 ISVAAELS----GMHPQTLRLYERLGLLSPSRTDGGTRRYSERDIERLRR-IQRLTQELGVNLAGVK-RILELEEELAEL 77 (91)
T ss_pred HHHHHHHH----CcCHHHHHHHHHCCCcCCCcCCCCCeeECHHHHHHHHH-HHHHHHHcCCCHHHHH-HHHHHHHHHHHH
Confidence 45678888 99999998887543332211 001111111 111111 112222 222467777888
Q ss_pred HHHhHHHHHHhhh
Q 003071 120 VYENTFFRQQTQN 132 (850)
Q Consensus 120 ~~En~~Lk~el~~ 132 (850)
+.|++.|++++.+
T Consensus 78 ~~~l~~l~~~~~~ 90 (91)
T cd04766 78 RAELDELRARLRR 90 (91)
T ss_pred HHHHHHHHHHhcc
Confidence 8888888887754
No 223
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=21.91 E-value=2.5e+02 Score=31.28 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=14.5
Q ss_pred HHHHHHHHHhHHHHHHhhhhc
Q 003071 114 KQVSQLVYENTFFRQQTQNAA 134 (850)
Q Consensus 114 ~~~~~L~~En~~Lk~el~~~~ 134 (850)
+++..|..|..++|.||+|..
T Consensus 109 kqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 109 KQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777888888764
No 224
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=21.63 E-value=8.7e+02 Score=28.45 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 003071 105 LMEENDRLQKQVSQLVYENTFFRQQTQ 131 (850)
Q Consensus 105 l~ee~~~l~~~~~~L~~En~~Lk~el~ 131 (850)
++++.+.|.+++.+.+-|.++|+.+++
T Consensus 354 Lrkerd~L~keLeekkreleql~~q~~ 380 (442)
T PF06637_consen 354 LRKERDSLAKELEEKKRELEQLKMQLA 380 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555554
No 225
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.61 E-value=2.9e+02 Score=28.49 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=17.6
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 003071 95 NRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (850)
Q Consensus 95 n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el 130 (850)
+++...+.+.++++.++.+.+...|+.+-+.|.+|+
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444445555555444444555555555554444
No 226
>PF00424 REV: REV protein (anti-repression trans-activator protein); InterPro: IPR000625 REV is a viral anti-repression trans-activator protein, which appears to act post-transcriptionally [] to relieve negative repression of GAG and ENV production. It is a phosphoprotein [, ] whose state of phosphorylation is mediated by a specific serine kinase activity present in the nucleus []. REV accumulates in the nucleoli [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0042025 host cell nucleus; PDB: 1ETF_B 1ETG_B 1ULL_B 3LPH_B 2X7L_R.
Probab=21.60 E-value=1.2e+02 Score=28.45 Aligned_cols=36 Identities=36% Similarity=0.542 Sum_probs=20.3
Q ss_pred HHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHHH
Q 003071 35 VEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 88 (850)
Q Consensus 35 l~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~~ 88 (850)
+....-.|+.+|||...--.+ ++ .|||.|||+++..
T Consensus 14 vRiIk~LyqsnPyP~~~GTr~-aR-----------------RnRRRRWR~rq~Q 49 (91)
T PF00424_consen 14 VRIIKILYQSNPYPSPEGTRQ-AR-----------------RNRRRRWRARQRQ 49 (91)
T ss_dssp HHHHHHHHHTS-S--S-S-HH-HH-----------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHccccCCCCCCccc-cc-----------------cchhhhHHHHHHH
Confidence 344556699999998552222 22 3899999987654
No 227
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=21.38 E-value=1.8e+02 Score=31.34 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhHHHHHHhh
Q 003071 111 RLQKQVSQLVYENTFFRQQTQ 131 (850)
Q Consensus 111 ~l~~~~~~L~~En~~Lk~el~ 131 (850)
.+..|..+|..|+..|+++++
T Consensus 190 ~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 190 GLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HcccHHHHHHHHHHHHHHHHh
Confidence 333344444444444444443
No 228
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=21.29 E-value=2.7e+02 Score=31.81 Aligned_cols=63 Identities=29% Similarity=0.284 Sum_probs=39.7
Q ss_pred eecccchhHHHHH--HHHHHHHHHhHHHHHhhHHHH---HHHHHHHHHHHHHHHHhHHHHHHhhhhcc
Q 003071 73 VWFQNRRCREKQR--KEASRLQAVNRKLTAMNKLLM---EENDRLQKQVSQLVYENTFFRQQTQNAAT 135 (850)
Q Consensus 73 vWFQNRRak~Krr--~~~~~l~~~n~~l~a~n~~l~---ee~~~l~~~~~~L~~En~~Lk~el~~~~~ 135 (850)
-||=-=|-|+|+- .....++..-.++...++-++ +..++-+.+.++|+..|++|+.||-++..
T Consensus 53 gwff~i~~re~qlk~aa~~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~ 120 (401)
T PF06785_consen 53 GWFFAIGRREKQLKTAAGQLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVRE 120 (401)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3776555555542 233344444445555554444 44555677888999999999999988744
No 229
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=21.18 E-value=1.8e+02 Score=28.09 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=23.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003071 98 LTAMNKLLMEENDRLQKQVSQLVYENTFFRQ 128 (850)
Q Consensus 98 l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~ 128 (850)
.+.+-+.+++.+..|+....+|+.||.-||.
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677888888888888888888888774
No 230
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.71 E-value=2.9e+02 Score=25.55 Aligned_cols=31 Identities=35% Similarity=0.503 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 003071 101 MNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (850)
Q Consensus 101 ~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~ 131 (850)
..+.+.+++..+++.+..|..||..|+++++
T Consensus 69 K~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 69 KDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567778888899999999999999999874
No 231
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=20.22 E-value=1.7e+02 Score=26.52 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 003071 104 LLMEENDRLQKQVSQLVYENTFFRQQT 130 (850)
Q Consensus 104 ~l~ee~~~l~~~~~~L~~En~~Lk~el 130 (850)
.+.+++.+|+.+++.|..|.+.++.+.
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~~~~ 30 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNKREF 30 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455566666666666666666666553
Done!