Query 003071
Match_columns 850
No_of_seqs 379 out of 1671
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 12:15:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003071.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003071hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.8 6.3E-19 2.2E-23 181.8 16.8 199 168-384 20-229 (231)
2 2dmt_A Homeobox protein BARH-l 99.6 9.9E-17 3.4E-21 140.9 3.8 63 19-85 13-75 (80)
3 2da3_A Alpha-fetoprotein enhan 99.6 9.3E-17 3.2E-21 140.5 2.4 63 20-86 14-76 (80)
4 1wh5_A ZF-HD homeobox family p 99.6 1.7E-16 5.9E-21 139.7 2.7 61 20-84 14-78 (80)
5 1wh7_A ZF-HD homeobox family p 99.6 2.9E-16 1E-20 138.4 2.0 59 21-84 15-78 (80)
6 2cue_A Paired box protein PAX6 99.6 1.2E-15 4E-20 134.0 5.6 63 22-88 6-68 (80)
7 1nk2_P Homeobox protein VND; h 99.6 1.2E-15 4.1E-20 133.0 5.2 63 21-87 7-69 (77)
8 2e1o_A Homeobox protein PRH; D 99.6 1.4E-15 4.7E-20 130.2 4.1 60 23-86 7-66 (70)
9 2dmq_A LIM/homeobox protein LH 99.6 1.7E-15 5.9E-20 132.7 4.7 61 22-86 6-66 (80)
10 2kt0_A Nanog, homeobox protein 99.6 1.1E-15 3.9E-20 135.0 3.4 64 19-86 18-81 (84)
11 2dmu_A Homeobox protein goosec 99.6 1.4E-15 4.8E-20 130.1 3.8 60 23-86 7-66 (70)
12 2cra_A Homeobox protein HOX-B1 99.5 7.7E-16 2.6E-20 131.8 2.1 61 22-86 6-66 (70)
13 2dms_A Homeobox protein OTX2; 99.5 1.3E-15 4.5E-20 133.6 3.5 61 22-86 6-66 (80)
14 3a01_A Homeodomain-containing 99.5 1.9E-15 6.4E-20 136.6 4.4 63 22-88 16-78 (93)
15 2da2_A Alpha-fetoprotein enhan 99.5 1.4E-15 4.7E-20 130.1 2.7 61 22-86 6-66 (70)
16 2h1k_A IPF-1, pancreatic and d 99.5 1.4E-15 4.8E-20 127.6 2.6 59 23-85 3-61 (63)
17 1ig7_A Homeotic protein MSX-1; 99.5 1.9E-15 6.6E-20 124.4 3.4 57 24-84 1-57 (58)
18 1puf_A HOX-1.7, homeobox prote 99.5 4.1E-15 1.4E-19 129.6 5.4 62 22-87 12-73 (77)
19 1fjl_A Paired protein; DNA-bin 99.5 2.7E-15 9.2E-20 131.9 4.1 63 21-87 16-78 (81)
20 2djn_A Homeobox protein DLX-5; 99.5 1.4E-15 4.6E-20 130.3 1.7 60 22-85 6-65 (70)
21 2da1_A Alpha-fetoprotein enhan 99.5 1.7E-15 5.9E-20 129.4 2.3 61 22-86 6-66 (70)
22 2hdd_A Protein (engrailed home 99.5 1.7E-15 5.9E-20 126.2 2.1 58 23-84 3-60 (61)
23 2vi6_A Homeobox protein nanog; 99.5 7.7E-16 2.6E-20 128.7 -0.2 59 23-85 3-61 (62)
24 1ahd_P Antennapedia protein mu 99.5 2E-15 6.9E-20 128.6 2.2 60 23-86 2-61 (68)
25 1zq3_P PRD-4, homeotic bicoid 99.5 4.3E-15 1.5E-19 126.5 3.7 61 23-87 2-62 (68)
26 1uhs_A HOP, homeodomain only p 99.5 4.2E-15 1.4E-19 127.9 3.6 59 24-86 2-61 (72)
27 1jgg_A Segmentation protein EV 99.5 3E-15 1E-19 124.3 2.2 58 24-85 2-59 (60)
28 1ftt_A TTF-1 HD, thyroid trans 99.5 3.7E-15 1.3E-19 126.9 2.6 60 23-86 2-61 (68)
29 2l7z_A Homeobox protein HOX-A1 99.5 4.9E-15 1.7E-19 127.9 3.1 60 22-85 6-65 (73)
30 1yz8_P Pituitary homeobox 2; D 99.5 2.6E-15 9E-20 127.8 1.2 61 23-87 3-63 (68)
31 3a02_A Homeobox protein arista 99.5 3.1E-15 1.1E-19 124.2 1.4 57 26-86 2-58 (60)
32 2da5_A Zinc fingers and homeob 99.5 4.9E-15 1.7E-19 128.7 2.7 58 25-86 9-66 (75)
33 2hi3_A Homeodomain-only protei 99.5 7E-15 2.4E-19 126.9 3.6 59 24-86 3-62 (73)
34 2da4_A Hypothetical protein DK 99.5 4E-15 1.4E-19 130.5 1.9 61 22-86 7-71 (80)
35 3rkq_A Homeobox protein NKX-2. 99.5 5.5E-15 1.9E-19 121.2 2.4 56 24-83 3-58 (58)
36 1b8i_A Ultrabithorax, protein 99.5 4.2E-15 1.4E-19 130.9 1.4 61 22-86 19-79 (81)
37 3a03_A T-cell leukemia homeobo 99.5 6.8E-15 2.3E-19 120.7 2.5 54 28-85 2-55 (56)
38 2r5y_A Homeotic protein sex co 99.5 5.7E-15 1.9E-19 131.9 2.1 60 22-85 27-86 (88)
39 1akh_A Protein (mating-type pr 99.5 4.6E-15 1.6E-19 123.4 1.2 58 22-83 4-61 (61)
40 1bw5_A ISL-1HD, insulin gene e 99.5 4.4E-15 1.5E-19 125.6 1.1 60 22-85 2-61 (66)
41 2ecc_A Homeobox and leucine zi 99.5 1.2E-14 4.2E-19 126.7 3.7 57 25-85 5-61 (76)
42 2k40_A Homeobox expressed in E 99.5 8E-15 2.7E-19 124.3 2.5 59 24-86 2-60 (67)
43 2m0c_A Homeobox protein arista 99.5 9.1E-15 3.1E-19 126.2 2.9 61 22-86 8-68 (75)
44 2cuf_A FLJ21616 protein; homeo 99.5 1.2E-14 4.3E-19 131.5 3.7 62 22-87 6-82 (95)
45 3nar_A ZHX1, zinc fingers and 99.5 5.3E-15 1.8E-19 134.3 1.1 61 22-86 24-84 (96)
46 1b72_A Protein (homeobox prote 99.4 2.1E-14 7.1E-19 130.6 3.2 62 22-87 33-94 (97)
47 1x2n_A Homeobox protein pknox1 99.4 2.9E-14 9.9E-19 122.9 3.9 61 22-86 6-69 (73)
48 2ly9_A Zinc fingers and homeob 99.4 1.2E-14 4E-19 125.5 1.2 60 23-86 6-65 (74)
49 2ecb_A Zinc fingers and homeob 99.4 2.3E-14 7.7E-19 128.8 2.8 59 25-87 13-71 (89)
50 2dmp_A Zinc fingers and homeob 99.4 4.1E-14 1.4E-18 126.9 4.2 58 25-86 15-72 (89)
51 2dn0_A Zinc fingers and homeob 99.4 2E-14 6.8E-19 125.0 1.4 59 24-86 9-67 (76)
52 1k61_A Mating-type protein alp 99.4 3.4E-14 1.2E-18 117.8 2.0 55 26-84 1-58 (60)
53 2cqx_A LAG1 longevity assuranc 99.4 1.6E-14 5.6E-19 124.7 -0.4 58 23-84 8-66 (72)
54 1puf_B PRE-B-cell leukemia tra 99.4 6.6E-14 2.3E-18 120.6 3.2 59 24-86 2-63 (73)
55 1b72_B Protein (PBX1); homeodo 99.4 6.8E-14 2.3E-18 124.4 3.1 59 24-86 2-63 (87)
56 2dmn_A Homeobox protein TGIF2L 99.4 9.9E-14 3.4E-18 122.8 3.7 61 22-86 6-69 (83)
57 1au7_A Protein PIT-1, GHF-1; c 99.4 3.2E-14 1.1E-18 138.6 0.3 62 20-85 84-145 (146)
58 1du6_A PBX1, homeobox protein 99.4 2.8E-14 9.7E-19 119.8 -0.2 58 23-84 3-63 (64)
59 1e3o_C Octamer-binding transcr 99.4 5.5E-14 1.9E-18 138.9 1.5 60 22-85 100-159 (160)
60 1mnm_C Protein (MAT alpha-2 tr 99.4 1.2E-13 4E-18 123.2 2.6 58 22-83 26-86 (87)
61 1wi3_A DNA-binding protein SAT 99.4 1.6E-13 5.4E-18 116.4 3.0 58 22-83 6-64 (71)
62 3nau_A Zinc fingers and homeob 99.4 1.3E-13 4.4E-18 116.8 2.2 53 30-86 11-63 (66)
63 1le8_B Mating-type protein alp 99.4 1.1E-13 3.9E-18 122.3 1.8 59 24-86 3-64 (83)
64 2l9r_A Homeobox protein NKX-3. 99.4 6.2E-14 2.1E-18 120.2 -0.3 55 28-86 9-63 (69)
65 3d1n_I POU domain, class 6, tr 99.3 1.7E-13 5.9E-18 134.0 2.5 60 21-84 91-150 (151)
66 2da6_A Hepatocyte nuclear fact 99.3 2.9E-13 1E-17 124.1 3.8 67 22-88 5-88 (102)
67 1lfb_A Liver transcription fac 99.3 6E-14 2.1E-18 128.4 -0.7 63 21-87 7-90 (99)
68 2xsd_C POU domain, class 3, tr 99.3 1.1E-13 3.8E-18 137.3 0.9 62 21-86 97-158 (164)
69 2pso_A STAR-related lipid tran 99.3 1.6E-12 5.5E-17 135.6 9.0 175 174-363 32-210 (237)
70 2e19_A Transcription factor 8; 99.3 1.9E-13 6.4E-18 115.5 0.7 53 28-84 8-60 (64)
71 1em2_A MLN64 protein; beta bar 99.3 1.5E-11 5.1E-16 126.6 14.1 197 170-384 21-226 (229)
72 3l1p_A POU domain, class 5, tr 99.3 4.4E-13 1.5E-17 131.8 2.2 59 22-84 95-153 (155)
73 3p0l_A Steroidogenic acute reg 99.3 1.3E-11 4.6E-16 126.4 13.2 195 171-382 11-213 (221)
74 1x2m_A LAG1 longevity assuranc 99.3 2.3E-13 7.7E-18 115.0 -0.1 49 32-84 9-58 (64)
75 2d5v_A Hepatocyte nuclear fact 99.2 6.3E-13 2.1E-17 131.5 0.0 60 22-85 96-155 (164)
76 3k2a_A Homeobox protein MEIS2; 99.2 3.6E-12 1.2E-16 108.4 1.7 53 29-85 4-59 (67)
77 1ic8_A Hepatocyte nuclear fact 99.1 2.9E-12 9.9E-17 130.3 -2.1 61 20-84 112-193 (194)
78 2lk2_A Homeobox protein TGIF1; 98.9 2.3E-10 8E-15 102.5 3.0 54 28-85 10-66 (89)
79 1ln1_A PC-TP, phosphatidylchol 98.9 1.4E-09 4.7E-14 110.1 9.1 151 219-384 52-210 (214)
80 2h8r_A Hepatocyte nuclear fact 98.9 1.9E-10 6.6E-15 118.5 1.2 59 20-82 139-218 (221)
81 3fo5_A Thioesterase, adipose a 98.9 1.8E-09 6.1E-14 114.4 7.2 125 221-357 90-221 (258)
82 2da7_A Zinc finger homeobox pr 98.9 3.6E-10 1.2E-14 96.5 1.4 46 32-81 14-59 (71)
83 1jss_A Stard4, cholesterol-reg 98.9 3.7E-08 1.3E-12 101.2 16.3 190 171-382 25-222 (224)
84 1mh3_A Maltose binding-A1 home 98.8 6.6E-10 2.2E-14 122.3 -0.5 56 24-83 366-421 (421)
85 2e3n_A Lipid-transfer protein 98.4 1.7E-06 5.9E-11 90.3 12.8 195 171-382 23-245 (255)
86 3qsz_A STAR-related lipid tran 98.4 9.9E-07 3.4E-11 87.6 10.1 149 219-383 27-179 (189)
87 2nzz_A Penetratin conjugated G 98.2 9.6E-08 3.3E-12 72.1 -1.2 20 69-88 1-20 (37)
88 3t50_A Blue-light-activated hi 97.5 0.00073 2.5E-08 59.3 11.4 105 741-846 5-110 (128)
89 4eet_B Phototropin-2; LOV, blu 97.5 0.00091 3.1E-08 56.7 11.4 105 741-846 5-110 (115)
90 3lyx_A Sensory BOX/ggdef domai 97.5 0.0018 6.3E-08 54.5 12.7 111 733-846 6-117 (124)
91 3ue6_A Aureochrome1; PAS/LOV d 97.4 0.00089 3E-08 61.5 11.4 112 734-846 35-148 (166)
92 1n9l_A PHOT-LOV1, putative blu 97.3 0.0016 5.3E-08 57.3 10.9 103 743-846 3-106 (109)
93 4hia_A LOV protein; PAS, HTH, 97.3 0.0013 4.5E-08 61.7 10.5 112 734-846 7-120 (176)
94 2gj3_A Nitrogen fixation regul 97.2 0.0029 9.9E-08 55.9 11.7 109 733-846 4-115 (120)
95 3luq_A Sensor protein; PAS, hi 97.2 0.0013 4.3E-08 55.8 8.4 109 734-846 3-112 (114)
96 3p7n_A Sensor histidine kinase 97.2 0.0021 7.2E-08 65.2 11.4 112 734-846 63-176 (258)
97 2z6d_A Phototropin-2; PAS-fold 97.1 0.0038 1.3E-07 52.7 11.0 110 736-846 8-119 (130)
98 3sw1_A Sensory box protein; li 97.1 0.0029 1E-07 57.9 10.6 113 733-846 24-138 (162)
99 1byw_A Protein (human ERG pota 97.0 0.0056 1.9E-07 50.2 11.1 100 746-846 4-106 (110)
100 3d72_A Vivid PAS protein VVD; 96.9 0.0056 1.9E-07 55.5 11.0 107 738-845 30-148 (149)
101 3f1p_A Endothelial PAS domain- 96.9 0.0069 2.4E-07 52.8 11.1 102 741-845 7-109 (117)
102 3mqq_A Transcriptional regulat 96.9 0.0023 7.8E-08 56.3 7.4 106 735-845 4-111 (120)
103 2pr5_A Blue-light photorecepto 96.7 0.012 4.2E-07 52.7 11.2 104 738-844 3-108 (132)
104 1d06_A Nitrogen fixation regul 96.6 0.012 4.1E-07 52.6 10.7 89 736-826 18-111 (130)
105 2r78_A Sensor protein; sensory 96.6 0.0063 2.2E-07 53.9 8.4 90 733-825 10-100 (117)
106 3kx0_X Uncharacterized protein 96.5 0.0069 2.3E-07 58.3 8.4 110 733-846 36-151 (185)
107 3k3c_A Protein RV1364C/MT1410; 96.5 0.0061 2.1E-07 55.9 7.7 110 733-846 16-131 (158)
108 2v0u_A NPH1-1, LOV2; kinase, t 96.5 0.027 9.1E-07 48.8 11.4 105 741-846 10-115 (146)
109 2l0w_A Potassium voltage-gated 96.4 0.025 8.7E-07 48.6 10.9 105 741-846 27-134 (138)
110 2r55_A STAR-related lipid tran 96.4 0.13 4.4E-06 52.4 17.8 149 401-606 22-181 (231)
111 3f1p_B ARYL hydrocarbon recept 96.3 0.012 4E-07 51.7 8.5 105 737-845 5-113 (121)
112 2wkq_A NPH1-1, RAS-related C3 96.3 0.022 7.6E-07 59.8 11.7 105 741-846 19-124 (332)
113 3olo_A Two-component sensor hi 96.1 0.047 1.6E-06 46.5 11.0 83 736-825 15-98 (118)
114 2vv6_A FIXL, sensor protein FI 95.9 0.043 1.5E-06 48.0 10.0 83 742-826 2-88 (119)
115 3ewk_A Sensor protein; PAS dom 95.9 0.071 2.4E-06 52.9 12.8 103 741-846 119-227 (227)
116 3b33_A Sensor protein; structu 95.9 0.028 9.6E-07 48.5 8.5 105 735-846 8-113 (115)
117 3mxq_A Sensor protein; PSI2, M 95.8 0.033 1.1E-06 53.8 9.4 108 735-846 23-143 (152)
118 3mjq_A Uncharacterized protein 95.8 0.031 1.1E-06 48.1 8.3 102 738-845 3-105 (126)
119 3ewk_A Sensor protein; PAS dom 95.7 0.037 1.3E-06 55.0 9.8 93 753-846 7-99 (227)
120 3eeh_A Putative light and redo 95.7 0.065 2.2E-06 45.1 10.0 109 734-846 11-123 (125)
121 2kdk_A ARYL hydrocarbon recept 95.5 0.063 2.1E-06 46.6 9.2 97 741-840 11-109 (121)
122 3fc7_A HTR-like protein, senso 95.4 0.036 1.2E-06 47.9 7.5 104 734-846 19-123 (125)
123 3nja_A Probable ggdef family p 95.3 0.038 1.3E-06 47.1 7.3 109 735-846 8-119 (125)
124 3mfx_A Sensory BOX/ggdef famil 95.1 0.08 2.7E-06 49.0 9.2 88 735-824 8-103 (129)
125 3icy_A Sensor protein; sensory 95.0 0.059 2E-06 45.8 7.3 110 733-845 3-115 (118)
126 3bwl_A Sensor protein; structu 94.5 0.12 4.2E-06 45.0 8.4 85 734-823 17-104 (126)
127 2pso_A STAR-related lipid tran 94.5 0.79 2.7E-05 47.3 15.7 174 422-689 48-227 (237)
128 1v9y_A Heme PAS sensor protein 94.3 0.24 8.3E-06 44.6 10.2 99 735-837 41-144 (167)
129 1ll8_A PAS kinase; PAS domain, 94.2 0.035 1.2E-06 48.2 4.1 82 742-824 7-92 (114)
130 3fo5_A Thioesterase, adipose a 93.9 1 3.5E-05 47.4 15.2 146 402-606 47-201 (258)
131 1jss_A Stard4, cholesterol-reg 93.5 1.3 4.6E-05 44.8 15.0 145 403-606 26-176 (224)
132 3qsz_A STAR-related lipid tran 93.2 2.3 7.7E-05 41.5 15.6 54 424-497 3-58 (189)
133 3a0s_A Sensor protein; PAS-fol 92.9 0.91 3.1E-05 35.8 10.3 93 743-845 2-95 (96)
134 3p0l_A Steroidogenic acute reg 92.7 2.2 7.6E-05 42.9 15.1 192 403-688 12-213 (221)
135 4hi4_A Aerotaxis transducer AE 92.7 0.71 2.4E-05 40.8 10.1 98 736-846 7-117 (121)
136 1ln1_A PC-TP, phosphatidylchol 92.1 2.7 9.1E-05 41.7 14.6 68 411-497 13-84 (214)
137 3h9w_A Diguanylate cyclase wit 91.5 0.49 1.7E-05 40.7 7.5 89 754-845 13-104 (115)
138 3fg8_A Uncharacterized protein 91.3 0.22 7.5E-06 43.8 5.1 65 738-804 16-81 (118)
139 2d4r_A Hypothetical protein TT 90.6 1.9 6.3E-05 38.7 10.7 140 223-385 6-146 (147)
140 3vol_A Aerotaxis transducer AE 90.4 1.1 3.8E-05 45.3 10.0 115 719-846 7-134 (233)
141 1hjb_A Ccaat/enhancer binding 90.3 0.57 2E-05 41.7 6.7 49 78-133 28-76 (87)
142 1gu4_A CAAT/enhancer binding p 88.5 0.97 3.3E-05 39.5 6.6 46 78-130 28-73 (78)
143 1ci6_A Transcription factor AT 88.0 1.3 4.3E-05 37.0 6.8 46 79-131 16-61 (63)
144 2w0n_A Sensor protein DCUS; si 86.5 0.82 2.8E-05 38.4 5.1 98 734-846 15-116 (118)
145 1em2_A MLN64 protein; beta bar 86.5 21 0.00071 35.9 16.4 146 404-606 24-178 (229)
146 2vlg_A Sporulation kinase A; h 86.1 1.8 6.1E-05 38.8 7.4 78 741-824 7-85 (111)
147 2jhe_A Transcription regulator 86.0 1.7 5.7E-05 41.3 7.5 90 734-836 80-170 (190)
148 2wt7_A Proto-oncogene protein 85.8 2 6.7E-05 35.8 6.8 45 79-130 16-60 (63)
149 4f3l_A Mclock, circadian locom 85.7 2.2 7.4E-05 46.4 9.1 91 753-844 259-350 (361)
150 1t2k_D Cyclic-AMP-dependent tr 85.7 2.2 7.4E-05 35.2 7.0 34 97-130 26-59 (61)
151 4eho_A Bacteriophytochrome, PA 83.6 1.7 5.8E-05 51.1 7.6 102 741-846 526-627 (635)
152 1t2k_D Cyclic-AMP-dependent tr 81.5 7.2 0.00024 32.0 8.4 43 79-121 15-57 (61)
153 2ys9_A Homeobox and leucine zi 79.7 0.47 1.6E-05 40.5 0.7 39 34-76 17-55 (70)
154 1jnm_A Proto-oncogene C-JUN; B 78.1 2.7 9.2E-05 34.8 4.8 32 99-130 28-59 (62)
155 1gd2_E Transcription factor PA 75.7 4.8 0.00017 34.4 5.8 43 82-124 25-67 (70)
156 2jee_A YIIU; FTSZ, septum, coi 74.0 9.4 0.00032 33.5 7.3 42 90-131 24-65 (81)
157 3mr0_A Sensory box histidine k 73.5 13 0.00043 33.3 8.6 106 736-845 11-120 (142)
158 2dgc_A Protein (GCN4); basic d 72.5 4.9 0.00017 33.5 5.0 26 108-133 31-56 (63)
159 3s9g_A Protein hexim1; cyclin 71.9 11 0.00039 34.0 7.4 42 91-132 49-90 (104)
160 3a0r_A Sensor protein; four he 70.7 5.4 0.00018 41.5 6.1 99 737-846 11-112 (349)
161 3tfz_A Cyclase; helix-GRIP, BE 70.2 16 0.00054 35.1 8.9 122 222-364 8-130 (172)
162 3rty_A Period circadian protei 69.5 19 0.00065 39.1 10.3 89 743-835 154-248 (339)
163 1ci6_A Transcription factor AT 68.4 19 0.00066 29.8 7.7 32 102-133 25-56 (63)
164 2w6a_A ARF GTPase-activating p 68.3 12 0.00042 30.8 6.2 33 96-128 30-62 (63)
165 1jnm_A Proto-oncogene C-JUN; B 67.6 11 0.00036 31.1 6.0 38 80-117 16-53 (62)
166 2wt7_A Proto-oncogene protein 66.8 27 0.00092 28.8 8.3 24 109-132 25-48 (63)
167 1hjb_A Ccaat/enhancer binding 66.7 22 0.00077 31.5 8.2 42 96-137 32-73 (87)
168 3p9v_A Uncharacterized protein 63.3 34 0.0012 32.4 9.7 142 222-384 10-152 (161)
169 1dh3_A Transcription factor CR 60.0 33 0.0011 27.7 7.4 28 107-134 22-49 (55)
170 1t17_A Conserved hypothetical 59.9 21 0.00071 33.0 7.3 136 222-383 5-144 (148)
171 2j5u_A MREC protein; bacterial 59.5 5.3 0.00018 41.9 3.3 38 91-132 24-61 (255)
172 2qkp_A Uncharacterized protein 58.5 22 0.00074 33.6 7.2 105 734-846 19-129 (151)
173 3m91_A Proteasome-associated A 58.5 27 0.00093 28.0 6.5 37 97-133 13-49 (51)
174 2e3n_A Lipid-transfer protein 58.5 9.5 0.00033 39.1 5.1 58 422-497 45-105 (255)
175 3cax_A Uncharacterized protein 57.7 27 0.00092 37.9 8.7 105 734-847 239-344 (369)
176 2wt7_B Transcription factor MA 57.3 11 0.00036 33.8 4.4 64 65-132 17-80 (90)
177 3he5_B Synzip2; heterodimeric 57.2 30 0.001 26.8 6.2 32 98-129 15-46 (52)
178 2jee_A YIIU; FTSZ, septum, coi 56.1 39 0.0014 29.6 7.7 49 85-133 26-74 (81)
179 2yy0_A C-MYC-binding protein; 54.3 20 0.00067 28.9 5.1 33 100-132 19-51 (53)
180 1gu4_A CAAT/enhancer binding p 54.2 60 0.0021 28.2 8.5 36 100-135 36-71 (78)
181 1dh3_A Transcription factor CR 53.1 11 0.00038 30.5 3.5 21 110-130 32-52 (55)
182 2oqq_A Transcription factor HY 53.0 34 0.0011 26.4 5.8 35 97-131 7-41 (42)
183 3tl1_A WHIE ORF VI, polyketide 52.9 86 0.0029 29.9 10.6 111 222-353 6-117 (159)
184 3hnw_A Uncharacterized protein 51.9 38 0.0013 32.3 7.6 38 96-133 92-129 (138)
185 3he5_B Synzip2; heterodimeric 51.6 63 0.0022 25.0 7.2 40 95-134 5-44 (52)
186 4f3l_B BMAL1B; BHLH, PAS, circ 51.5 52 0.0018 35.9 9.8 94 745-843 280-377 (387)
187 1go4_E MAD1 (mitotic arrest de 51.5 44 0.0015 30.4 7.5 21 113-133 74-94 (100)
188 1t6f_A Geminin; coiled-coil, c 51.0 21 0.00072 26.6 4.3 27 101-127 8-34 (37)
189 1dip_A Delta-sleep-inducing pe 50.7 16 0.00056 31.3 4.3 31 100-130 15-45 (78)
190 1a93_B MAX protein, coiled coi 49.2 25 0.00085 26.0 4.4 28 105-132 5-32 (34)
191 2jn6_A Protein CGL2762, transp 47.4 2.6 8.7E-05 36.9 -1.2 82 28-133 4-85 (97)
192 3tvq_A Multifunctional cyclase 46.1 1.3E+02 0.0044 29.0 10.7 38 222-259 6-43 (169)
193 3m48_A General control protein 45.7 15 0.00051 26.9 2.8 28 110-137 3-30 (33)
194 1nwz_A PYP, photoactive yellow 45.1 67 0.0023 30.0 8.1 97 739-840 22-120 (125)
195 3oja_B Anopheles plasmodium-re 43.3 53 0.0018 37.4 8.6 37 104-140 548-584 (597)
196 3m9b_A Proteasome-associated A 42.5 26 0.00088 36.8 5.2 35 99-133 60-94 (251)
197 1mzu_A PPR; photoactive yellow 42.5 76 0.0026 29.9 8.0 97 739-840 27-125 (129)
198 2wt7_B Transcription factor MA 40.6 1.2E+02 0.0043 26.9 8.5 46 81-133 43-88 (90)
199 1deb_A APC protein, adenomatou 37.4 33 0.0011 27.5 3.8 33 97-129 14-46 (54)
200 3hnw_A Uncharacterized protein 37.3 1.1E+02 0.0036 29.3 8.2 44 88-131 91-134 (138)
201 3a2a_A Voltage-gated hydrogen 36.2 43 0.0015 27.2 4.4 34 103-136 14-47 (58)
202 1nkp_B MAX protein, MYC proto- 36.1 42 0.0014 28.9 4.8 31 103-133 50-80 (83)
203 1uii_A Geminin; human, DNA rep 35.3 73 0.0025 28.0 6.1 28 101-128 47-74 (83)
204 2oa5_A Hypothetical protein BQ 35.1 24 0.00082 32.6 3.1 24 109-132 10-33 (110)
205 3m9b_A Proteasome-associated A 34.5 32 0.0011 36.1 4.3 39 91-129 59-97 (251)
206 2oxj_A Hybrid alpha/beta pepti 33.8 32 0.0011 25.3 2.9 27 110-136 4-30 (34)
207 2dgc_A Protein (GCN4); basic d 33.6 1.4E+02 0.0047 24.7 7.3 19 112-130 42-60 (63)
208 1gd2_E Transcription factor PA 32.9 1.4E+02 0.0047 25.4 7.3 23 111-133 40-62 (70)
209 3s9g_A Protein hexim1; cyclin 31.9 1.6E+02 0.0056 26.6 7.8 43 87-129 52-94 (104)
210 4dj3_A Period circadian protei 31.1 1.4E+02 0.0047 31.9 8.9 79 753-833 182-264 (317)
211 1wlq_A Geminin; coiled-coil; 2 30.3 1E+02 0.0034 27.2 6.1 30 100-129 38-67 (83)
212 1nlw_A MAD protein, MAX dimeri 30.3 58 0.002 28.2 4.6 30 103-132 50-79 (80)
213 3m91_A Proteasome-associated A 29.8 1.7E+02 0.0059 23.4 6.9 36 91-126 14-49 (51)
214 3lph_A Protein REV; helix-loop 29.5 36 0.0012 29.1 3.0 37 35-89 18-54 (72)
215 3gdi_A Period circadian protei 28.9 59 0.002 34.7 5.5 83 745-831 167-251 (309)
216 3nmd_A CGMP dependent protein 28.7 1.9E+02 0.0063 24.9 7.3 28 108-135 41-68 (72)
217 3oja_A Leucine-rich immune mol 28.7 1E+02 0.0035 34.3 7.7 30 104-133 432-461 (487)
218 3c3g_A Alpha/beta peptide with 28.6 57 0.002 23.9 3.5 26 111-136 4-29 (33)
219 4f3l_A Mclock, circadian locom 28.0 69 0.0024 34.4 5.9 64 733-798 85-149 (361)
220 3mq7_A Bone marrow stromal ant 27.6 2.3E+02 0.0078 26.4 8.2 11 118-128 75-85 (121)
221 4dj2_A Period circadian protei 27.1 2.2E+02 0.0076 30.4 9.6 77 745-823 178-256 (320)
222 1t6f_A Geminin; coiled-coil, c 27.0 87 0.003 23.4 4.3 27 107-133 7-33 (37)
223 2v4h_A NF-kappa-B essential mo 26.6 2.5E+02 0.0084 25.9 8.2 46 88-133 64-109 (110)
224 3c3f_A Alpha/beta peptide with 26.6 50 0.0017 24.3 2.9 27 110-136 4-30 (34)
225 2glo_A Brinker CG9653-PA; prot 26.6 20 0.00068 28.5 1.0 45 27-76 3-47 (59)
226 1deb_A APC protein, adenomatou 26.4 2.5E+02 0.0085 22.5 7.2 24 110-133 6-29 (54)
227 2x7l_M HIV REV; nuclear export 26.2 24 0.00082 32.7 1.5 37 35-89 15-51 (115)
228 1wlq_A Geminin; coiled-coil; 2 26.1 2E+02 0.0067 25.3 7.1 27 108-134 39-65 (83)
229 1nkp_A C-MYC, MYC proto-oncoge 26.0 78 0.0027 27.8 4.8 31 103-133 55-85 (88)
230 2bni_A General control protein 25.9 51 0.0017 24.3 2.8 27 110-136 4-30 (34)
231 3ra3_B P2F; coiled coil domain 25.5 44 0.0015 23.0 2.3 15 118-132 4-18 (28)
232 1uii_A Geminin; human, DNA rep 25.4 2.5E+02 0.0085 24.7 7.7 30 107-136 46-75 (83)
233 2zxx_A Geminin; coiled-coil, c 24.6 1.8E+02 0.0062 25.4 6.6 34 100-133 34-67 (79)
234 1uo4_A General control protein 24.3 59 0.002 24.0 2.9 27 110-136 4-30 (34)
235 3mq7_A Bone marrow stromal ant 23.7 2.8E+02 0.0095 25.9 8.0 32 98-129 76-107 (121)
236 3a5t_A Transcription factor MA 23.4 16 0.00054 33.7 -0.2 35 100-134 58-92 (107)
237 2v66_B Nuclear distribution pr 22.8 2.4E+02 0.0081 26.1 7.5 20 111-130 39-58 (111)
238 3he5_A Synzip1; heterodimeric 22.3 2.7E+02 0.0091 21.3 6.7 40 91-130 8-47 (49)
239 3gpv_A Transcriptional regulat 21.3 1.3E+02 0.0044 28.5 5.8 35 25-76 50-84 (148)
240 2yy0_A C-MYC-binding protein; 20.5 1.2E+02 0.004 24.4 4.3 25 96-120 22-46 (53)
241 3oja_B Anopheles plasmodium-re 20.5 1.8E+02 0.006 33.1 7.7 8 124-131 561-568 (597)
242 2wvr_A Geminin; DNA replicatio 20.3 2.5E+02 0.0087 28.5 7.7 34 100-133 115-148 (209)
243 1jko_C HIN recombinase, DNA-in 20.2 25 0.00084 26.0 0.3 42 29-79 5-46 (52)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.80 E-value=6.3e-19 Score=181.78 Aligned_cols=199 Identities=21% Similarity=0.251 Sum_probs=160.3
Q ss_pred CchhhHHHHHHHHHHHHHHhcCCCcceEeCCCCCCCCCccceeec-cCCCccceecceeEEeeChhhHHHHhcC-----c
Q 003071 168 SPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAI-SHGCTGVAARACGLVGLDPTRVAEILKD-----R 241 (850)
Q Consensus 168 ~~~~l~~lA~~am~El~~la~~~~plWi~~~g~~~g~~~~~~~~~-~~~~~~EASR~~glV~m~~~~LVe~lmD-----~ 241 (850)
.++.++++|++||+|++++++.+ ..|..... +.| +.++-. ..+..+.+.|..|+|.+++.+|++.||+ +
T Consensus 20 ~~~~y~~~a~~~~~~~l~~~~~~-~~W~~~~~-~~g---v~v~~~~~~~~~~~~~k~~~~v~~~~~~v~~~l~~~d~~~r 94 (231)
T 2r55_A 20 FQSMAAQMSEAVAEKMLQYRRDT-AGWKICRE-GNG---VSVSWRPSVEFPGNLYRGEGIVYGTLEEVWDCVKPAVGGLR 94 (231)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC-SSCEEEEC-CSS---EEEEEEECSSSSSEEEEEEEEESSCHHHHHHHHCC--CCSH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCC-CCCEEEEe-CCC---EEEEEEccCCCCCcEEEEEEEECCCHHHHHHHHHhhCcchh
Confidence 36689999999999999999754 68987532 222 222221 1244568899999999999999999977 8
Q ss_pred hhhhhhCCcceEEeeccCCCcchHHHHHHHhh--ccccccCCceeeEEeeceeeCCCcEEEEEeecCCCCCCCCCCCCCC
Q 003071 242 PSWYRDCRSVEVVNVLPTGSSGTIELLYMQLY--APTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPH 319 (850)
Q Consensus 242 ~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~--v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~ 319 (850)
.+|-..|...++|..+... . .++| ++. .++++|++|||.++||+++.++|.|+|+.+|++. +..|+...
T Consensus 95 ~~Wd~~~~~~~vle~i~~~--~--~i~~-~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~----~~~P~~~~ 165 (231)
T 2r55_A 95 VKWDENVTGFEIIQSITDT--L--CVSR-TSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEH----PLCPPKPG 165 (231)
T ss_dssp HHHCTTCSEEEEEEECSSS--E--EEEE-EECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCC----TTSCCCTT
T ss_pred hhhccccceeEEEEEcCCC--E--EEEE-EEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEeccC----CCCCCCCC
Confidence 9999999999999988632 1 1222 222 3456899999999999999999999999999984 33556678
Q ss_pred ccceeecCcceEEeeCC--CCceEEEEEEeeeccCCCccccchhhhchhHHHHHHHHHHHHH-HHhhh
Q 003071 320 FVRAEMLPSGYLIRPCE--GGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLRQI 384 (850)
Q Consensus 320 ~~r~rrlPSGclIq~~~--nG~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar~w~~aLr-~~e~l 384 (850)
++|++.++|||+|++++ +|.|+|||+.|+|..-+ +| +.++++.+..+...+++.|| +|+.+
T Consensus 166 ~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~~ 229 (231)
T 2r55_A 166 FVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRSMTRFYANLQKAVKQF 229 (231)
T ss_dssp CEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence 99999999999999998 78999999999998865 66 58899999999999999996 88765
No 2
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=9.9e-17 Score=140.86 Aligned_cols=63 Identities=25% Similarity=0.338 Sum_probs=58.8
Q ss_pred CCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHH
Q 003071 19 KMIMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 85 (850)
Q Consensus 19 ~~~~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr 85 (850)
..++.+++|+.||.+|+..||..|+.++||+..+|.+||.+| ||+++||++||||||+|+|+.
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESL----GLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CCCHHHeeeccHHHHHHhhcc
Confidence 344567889999999999999999999999999999999999 999999999999999999974
No 3
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.61 E-value=9.3e-17 Score=140.53 Aligned_cols=63 Identities=29% Similarity=0.452 Sum_probs=58.6
Q ss_pred CCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 20 MIMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 20 ~~~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
..+.+|+|++||.+|+..||..|..++||+..++.+||.+| ||+++||++||||||+|+|+++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEV----GLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CcCHHHhHHHhHHHHHhHhhhc
Confidence 33557889999999999999999999999999999999999 9999999999999999999853
No 4
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.60 E-value=1.7e-16 Score=139.73 Aligned_cols=61 Identities=18% Similarity=0.283 Sum_probs=56.8
Q ss_pred CCCCCCCcccCCHHHHHHHHHhHhc----CCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHH
Q 003071 20 MIMDNGKYVRYTPEQVEALERLYHE----CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (850)
Q Consensus 20 ~~~~rr~R~r~T~~Ql~~LE~~F~~----~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 84 (850)
..+.+|+|+.||.+|+..||..|+. ++||+...|.+||.+| ||+++||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~l----gL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQET----GVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHS----CCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHh----CCCcccccCCccccCcCCCC
Confidence 3456788999999999999999999 9999999999999999 99999999999999999874
No 5
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.58 E-value=2.9e-16 Score=138.38 Aligned_cols=59 Identities=19% Similarity=0.318 Sum_probs=55.0
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhc-----CCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHH
Q 003071 21 IMDNGKYVRYTPEQVEALERLYHE-----CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (850)
Q Consensus 21 ~~~rr~R~r~T~~Ql~~LE~~F~~-----~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 84 (850)
.+.+|+|+.||.+|+..|| .|.+ ++||+...|.+||.+| ||+++||||||||||+|+|+
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~l----gL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 15 GTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAET----GVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHS----CCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHh----CcCcCcccccccccccCCCC
Confidence 3557889999999999999 7999 9999999999999999 99999999999999999864
No 6
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=1.2e-15 Score=134.02 Aligned_cols=63 Identities=27% Similarity=0.539 Sum_probs=58.7
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 88 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~~ 88 (850)
..+++|++||.+|+..||..|..++||+...|.+||.+| ||+++||++||||||+|+|+++..
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKI----DLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CCCHHHhhHHHHHHHHHHHHHhhh
Confidence 346889999999999999999999999999999999999 999999999999999999986543
No 7
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.57 E-value=1.2e-15 Score=133.04 Aligned_cols=63 Identities=29% Similarity=0.460 Sum_probs=58.6
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHH
Q 003071 21 IMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (850)
Q Consensus 21 ~~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~ 87 (850)
++.+++|++||.+|+..||..|..++||+...|.+||.++ ||+++||++||||||+|+|+.+.
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLI----RLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhcchhhhhc
Confidence 3457889999999999999999999999999999999999 99999999999999999998543
No 8
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=1.4e-15 Score=130.21 Aligned_cols=60 Identities=28% Similarity=0.511 Sum_probs=56.9
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 23 ~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
.+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|+.+
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKML----QLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----CCCHHHhhHhhHhhHhhcCCCC
Confidence 35788999999999999999999999999999999999 9999999999999999999854
No 9
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-15 Score=132.69 Aligned_cols=61 Identities=16% Similarity=0.374 Sum_probs=57.9
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
..+++|++||.+|+..||..|+.++||+..++.+||.++ ||+++||++||||||+|+|++.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 6 SGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKT----GLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CCCHHHhhHccHHHHHHHHHHH
Confidence 347889999999999999999999999999999999999 9999999999999999999864
No 10
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-15 Score=135.00 Aligned_cols=64 Identities=23% Similarity=0.325 Sum_probs=59.2
Q ss_pred CCCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 19 KMIMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 19 ~~~~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
.....+++|+.||.+|+..||..|..++||+...|.+||.+| ||+++||++||||||+|+|+++
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNIL----NLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHh
Confidence 344567889999999999999999999999999999999999 9999999999999999999743
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-15 Score=130.07 Aligned_cols=60 Identities=33% Similarity=0.606 Sum_probs=57.1
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 23 ~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
.+++|++||.+|+..||..|+.++||+..++.+||.++ ||+++||++||||||+|+|++.
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 7 GRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKV----HLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CCCHHHeehccccccccccccC
Confidence 46889999999999999999999999999999999999 9999999999999999999854
No 12
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=7.7e-16 Score=131.78 Aligned_cols=61 Identities=30% Similarity=0.516 Sum_probs=57.4
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
..+++|++||.+|+..||..|+.++||+..++.+||.++ ||+++||++||||||+|+|+.+
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 6 SGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAAT----SLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CCCHHHhhHhhHhHHHHhcccC
Confidence 347889999999999999999999999999999999999 9999999999999999999743
No 13
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=1.3e-15 Score=133.61 Aligned_cols=61 Identities=25% Similarity=0.531 Sum_probs=57.9
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
..+++|++||.+|+..||..|+.++||+...|.+||.++ ||+++||++||||||+|+|+++
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 6 SGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKI----NLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CcCHHHhhhhhHHHhHHhhHHH
Confidence 457889999999999999999999999999999999999 9999999999999999999854
No 14
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.55 E-value=1.9e-15 Score=136.65 Aligned_cols=63 Identities=29% Similarity=0.442 Sum_probs=58.8
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA 88 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~~ 88 (850)
+.+++|++||.+|+..||..|..++||+...|.+||.++ ||+++||++||||||+|+|++...
T Consensus 16 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 16 KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGL----KMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHh----CCChhhcccccHhhhhhhhhhhHH
Confidence 457889999999999999999999999999999999999 999999999999999999986543
No 15
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-15 Score=130.06 Aligned_cols=61 Identities=25% Similarity=0.406 Sum_probs=57.5
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
..+++|++||.+|+..||..|..++||+..++.+||.++ ||+++||++||||||+|+|++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 6 SGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLL----NLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHh----CCCHHHhHHhhHhhhHHHhhcc
Confidence 446889999999999999999999999999999999999 9999999999999999999743
No 16
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.54 E-value=1.4e-15 Score=127.57 Aligned_cols=59 Identities=32% Similarity=0.438 Sum_probs=55.6
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHH
Q 003071 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 85 (850)
Q Consensus 23 ~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr 85 (850)
.+++|++||.+|+..||..|..++||+...+.+||.++ ||+++||++||||||+|+|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVML----NLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CcCHHHhhHHHHhhhhhhhhh
Confidence 36789999999999999999999999999999999999 999999999999999999985
No 17
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.54 E-value=1.9e-15 Score=124.42 Aligned_cols=57 Identities=30% Similarity=0.487 Sum_probs=55.0
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHH
Q 003071 24 NGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (850)
Q Consensus 24 rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 84 (850)
+++|+.||.+|+..||..|+.++||+...+.+||.++ ||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSL----SLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH----CcCHHHhhhhhhHhhhhhcc
Confidence 4678999999999999999999999999999999999 99999999999999999986
No 18
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.53 E-value=4.1e-15 Score=129.64 Aligned_cols=62 Identities=31% Similarity=0.418 Sum_probs=58.1
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~ 87 (850)
..+++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+...
T Consensus 12 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLL----NLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp TTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhhh
Confidence 446789999999999999999999999999999999999 99999999999999999998543
No 19
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.53 E-value=2.7e-15 Score=131.92 Aligned_cols=63 Identities=27% Similarity=0.547 Sum_probs=58.5
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHH
Q 003071 21 IMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (850)
Q Consensus 21 ~~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~ 87 (850)
++.+++|++||.+|+..||..|..++||+...|.+||.++ ||+++||++||||||+|+|++..
T Consensus 16 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 16 RKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRT----NLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp -CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhhhhhhhcc
Confidence 3557889999999999999999999999999999999999 99999999999999999998653
No 20
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.4e-15 Score=130.27 Aligned_cols=60 Identities=25% Similarity=0.422 Sum_probs=56.9
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 85 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr 85 (850)
..+++|++||.+|+..||..|+.++||+..++.+||.++ ||+++||++||||||+|+|+.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 6 SGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASL----GLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHS----SCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHh----CCCHHHHHHHHHHHhhhhccc
Confidence 347889999999999999999999999999999999999 999999999999999999874
No 21
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.53 E-value=1.7e-15 Score=129.40 Aligned_cols=61 Identities=23% Similarity=0.395 Sum_probs=57.5
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
..+++|++||.+|+..||..|+.++||+...+.+||.++ ||+++||++||||||+|+|++.
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 6 SGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKS----GLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHh----CCCHHHHHHHhhhhhHHHhhhc
Confidence 447889999999999999999999999999999999999 9999999999999999999743
No 22
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.52 E-value=1.7e-15 Score=126.16 Aligned_cols=58 Identities=33% Similarity=0.564 Sum_probs=53.1
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHH
Q 003071 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (850)
Q Consensus 23 ~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 84 (850)
.+++|+.||++|+..||..|+.++||+...+.+||.++ ||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSEL----GLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CcCHHHHHHHhhhhcccccc
Confidence 46889999999999999999999999999999999999 99999999999999999986
No 23
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.52 E-value=7.7e-16 Score=128.68 Aligned_cols=59 Identities=27% Similarity=0.345 Sum_probs=52.9
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHH
Q 003071 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 85 (850)
Q Consensus 23 ~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr 85 (850)
.+++|+.||.+|+..||..|..++||+...+.+||..+ ||+++||++||||||+|+|++
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSIL----NLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh----CCCHHHhhHHhHHhhcchhhc
Confidence 46789999999999999999999999999999999999 999999999999999999975
No 24
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.52 E-value=2e-15 Score=128.64 Aligned_cols=60 Identities=30% Similarity=0.436 Sum_probs=57.3
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 23 ~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
.+++|++||.+|+..||..|..++||+...+.+||..+ ||+++||++||||||+|+|++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHH----CcCHhhhhHHhHHHHhHHhHhc
Confidence 46889999999999999999999999999999999999 9999999999999999999854
No 25
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.51 E-value=4.3e-15 Score=126.50 Aligned_cols=61 Identities=25% Similarity=0.428 Sum_probs=57.5
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHH
Q 003071 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (850)
Q Consensus 23 ~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~ 87 (850)
.+++|+.||.+|+..||..|..++||+...+.+||..+ ||+++||++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKL----ALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CcCHHHhhHhhHHHHHHHHHHhc
Confidence 36789999999999999999999999999999999999 99999999999999999998543
No 26
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.51 E-value=4.2e-15 Score=127.89 Aligned_cols=59 Identities=20% Similarity=0.335 Sum_probs=56.2
Q ss_pred CCCcccCCHHHHHHHHHhHhc-CCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 24 NGKYVRYTPEQVEALERLYHE-CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 24 rr~R~r~T~~Ql~~LE~~F~~-~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
.++|++||.+|+..||..|+. ++||+...|.+||.++ ||+++||++||||||+|+|+++
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH----CcCHHHhhHHhHHHHHHHhhhc
Confidence 577899999999999999996 9999999999999999 9999999999999999999855
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.51 E-value=3e-15 Score=124.32 Aligned_cols=58 Identities=33% Similarity=0.497 Sum_probs=55.2
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHH
Q 003071 24 NGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 85 (850)
Q Consensus 24 rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr 85 (850)
+++|+.||.+|+..||..|..++||+...+.+||.++ ||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQL----NLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----CcCHHHHHHhhHHHHhHhhcc
Confidence 5778999999999999999999999999999999999 999999999999999999973
No 28
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.51 E-value=3.7e-15 Score=126.94 Aligned_cols=60 Identities=30% Similarity=0.514 Sum_probs=57.3
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 23 ~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
.+++|++||++|+..||..|..++||+...+.+||..+ ||+++||++||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMI----HLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHh----CCCHHHhHHHhHHHhhhhhhhh
Confidence 46889999999999999999999999999999999999 9999999999999999999854
No 29
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.50 E-value=4.9e-15 Score=127.93 Aligned_cols=60 Identities=33% Similarity=0.532 Sum_probs=57.2
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 85 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr 85 (850)
..+++|++||++|+..||..|..++||+...|.+||.++ ||+++||++||||||+|+|+.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATT----NLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp CCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHH----TSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHH----CCCHHHHHHHHHHHhHHHHHH
Confidence 457889999999999999999999999999999999999 999999999999999999974
No 30
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.50 E-value=2.6e-15 Score=127.77 Aligned_cols=61 Identities=25% Similarity=0.531 Sum_probs=57.8
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHH
Q 003071 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (850)
Q Consensus 23 ~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~ 87 (850)
.+++|+.||++|+..||..|..++||+...+.+||.++ ||+++||++||||||+|+|+++.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHT----TSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhHHHHHHhh
Confidence 46889999999999999999999999999999999999 99999999999999999998654
No 31
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.50 E-value=3.1e-15 Score=124.19 Aligned_cols=57 Identities=28% Similarity=0.562 Sum_probs=50.6
Q ss_pred CcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 26 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 26 ~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
+|++||.+|+..||..|..++||+...+.+||.++ ||+++||++||||||+|+|+++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKI----GLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----CcCHHHHHHHhhhhhhhhHhhc
Confidence 57899999999999999999999999999999999 9999999999999999999854
No 32
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=4.9e-15 Score=128.66 Aligned_cols=58 Identities=29% Similarity=0.530 Sum_probs=55.0
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 25 GKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 25 r~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
++|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSET----KMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CCCHHHhhHhhHHHHHHHHHhh
Confidence 567789999999999999999999999999999999 9999999999999999999854
No 33
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.50 E-value=7e-15 Score=126.90 Aligned_cols=59 Identities=20% Similarity=0.295 Sum_probs=56.0
Q ss_pred CCCcccCCHHHHHHHHHhHh-cCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 24 NGKYVRYTPEQVEALERLYH-ECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 24 rr~R~r~T~~Ql~~LE~~F~-~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
+++|++||.+|+..||..|+ .++||+...|.+||.++ ||+++||++||||||+|+|+++
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~----~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhc
Confidence 57789999999999999999 49999999999999999 9999999999999999999855
No 34
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=4e-15 Score=130.53 Aligned_cols=61 Identities=11% Similarity=0.262 Sum_probs=57.5
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcC----CCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHEC----PKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~----~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
+.+++|+.||.+|+..||..|..+ +||+...|.+||.++ ||+++||++||||||+|+|+..
T Consensus 7 ~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~l----gL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 7 GALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATEL----NVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHh----CCCHHHhhHhHHHHHHHHhhcc
Confidence 447889999999999999999999 999999999999999 9999999999999999999854
No 35
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.49 E-value=5.5e-15 Score=121.25 Aligned_cols=56 Identities=34% Similarity=0.510 Sum_probs=54.0
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHH
Q 003071 24 NGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 83 (850)
Q Consensus 24 rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~K 83 (850)
+++|++||.+|+..||..|+.++||+..++.+||.++ ||+++||++||||||+|+|
T Consensus 3 rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 3 RKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVL----KLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CcCHHHHHHhhHHhhccCC
Confidence 5778999999999999999999999999999999999 9999999999999999975
No 36
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.48 E-value=4.2e-15 Score=130.94 Aligned_cols=61 Identities=30% Similarity=0.453 Sum_probs=54.2
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
..+++|++||.+|+..||..|..++||+...|.+||.++ ||+++||++||||||+|+|+..
T Consensus 19 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 19 LRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHAL----SLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhhhhhhhc
Confidence 346889999999999999999999999999999999999 9999999999999999999843
No 37
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.48 E-value=6.8e-15 Score=120.66 Aligned_cols=54 Identities=30% Similarity=0.484 Sum_probs=50.9
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHH
Q 003071 28 VRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 85 (850)
Q Consensus 28 ~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr 85 (850)
+.||++|+..||..|..++||+...|.+||.++ ||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKAL----RMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHh----CcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999 999999999999999999984
No 38
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.48 E-value=5.7e-15 Score=131.92 Aligned_cols=60 Identities=30% Similarity=0.445 Sum_probs=54.7
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 85 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr 85 (850)
..+++|++||.+|+..||..|+.++||+...|.+||.++ ||+++||++||||||+|+|++
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CcCHHHhhHHhHHHHHHhHhh
Confidence 347889999999999999999999999999999999999 999999999999999999974
No 39
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.48 E-value=4.6e-15 Score=123.37 Aligned_cols=58 Identities=26% Similarity=0.535 Sum_probs=48.5
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 83 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~K 83 (850)
+.+++|++||.+|+..||..|..++||+...+.+||.++ ||++.||++||||||+|+|
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhccC
Confidence 457889999999999999999999999999999999999 9999999999999999976
No 40
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.48 E-value=4.4e-15 Score=125.56 Aligned_cols=60 Identities=30% Similarity=0.687 Sum_probs=56.9
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 85 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr 85 (850)
+.+++|+.||.+|+..||..|+.++||+..++.+||.++ ||+++||++||||||+|+|++
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMT----GLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHH----CcCHHHHHHHhHHHHHHHhHH
Confidence 346889999999999999999999999999999999999 999999999999999999874
No 41
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.48 E-value=1.2e-14 Score=126.71 Aligned_cols=57 Identities=23% Similarity=0.327 Sum_probs=54.0
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHH
Q 003071 25 GKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 85 (850)
Q Consensus 25 r~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr 85 (850)
.+|.+||.+|+..||..|..++||+..+|.+||..+ ||+++||++||||||+|+|+.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~t----gLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQIT----GLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH----CcCHHHhhHHhHhhHHHHHHH
Confidence 456679999999999999999999999999999999 999999999999999999984
No 42
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.48 E-value=8e-15 Score=124.32 Aligned_cols=59 Identities=29% Similarity=0.494 Sum_probs=56.5
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 24 NGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 24 rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
+++|++||++|+..||..|..++||+...+.+||.++ ||+++||++||||||+|+|++.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKL----NLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CcCHHHhhHhhHhHHHHHhHhc
Confidence 6789999999999999999999999999999999999 9999999999999999999754
No 43
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.48 E-value=9.1e-15 Score=126.22 Aligned_cols=61 Identities=28% Similarity=0.563 Sum_probs=57.4
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
+.++.|++||++|+..||..|..++||+...+.+||..+ ||+++||++||||||+|+|+++
T Consensus 8 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 8 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRT----DLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CCCHHHHHHHhHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999 9999999999999999999754
No 44
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.47 E-value=1.2e-14 Score=131.54 Aligned_cols=62 Identities=24% Similarity=0.532 Sum_probs=58.3
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCC---------------CCcceEEeecccchhHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSN---------------IEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~g---------------L~~rQVkvWFQNRRak~Krr~ 86 (850)
+.+|+|+.||++|+..||..|+.++||+..+|.+||.+| | |++.||++||||||+|+|+++
T Consensus 6 ~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l----~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 6 SGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANAC----NAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp CCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----HHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999999999999 9 999999999999999999865
Q ss_pred H
Q 003071 87 E 87 (850)
Q Consensus 87 ~ 87 (850)
.
T Consensus 82 ~ 82 (95)
T 2cuf_A 82 N 82 (95)
T ss_dssp H
T ss_pred h
Confidence 4
No 45
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.47 E-value=5.3e-15 Score=134.31 Aligned_cols=61 Identities=26% Similarity=0.421 Sum_probs=56.0
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
..+++|++||.+|+..||..|+.++||+..+|.+||.++ ||+++||++||||||+|+|+.+
T Consensus 24 ~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 24 GSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKES----GLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ---CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CCCHHHeeecchhhhhHhhhhc
Confidence 456789999999999999999999999999999999999 9999999999999999999854
No 46
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.45 E-value=2.1e-14 Score=130.55 Aligned_cols=62 Identities=31% Similarity=0.543 Sum_probs=55.8
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~ 87 (850)
..+++|+.||.+|+..||..|..++||+...|.+||.+| ||+++||++||||||+|+|+++.
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATL----ELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHh----CCCHHHhHHHHHHHhHHHhHHhc
Confidence 456789999999999999999999999999999999999 99999999999999999998653
No 47
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.45 E-value=2.9e-14 Score=122.86 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=56.7
Q ss_pred CCCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHE---CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
..+++|++|+.+|+..||..|.+ ++||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 6 ~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 6 SGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQT----NLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH----CcCHHHHHHHhHHHHhhccccc
Confidence 34678899999999999999987 9999999999999999 9999999999999999999843
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.44 E-value=1.2e-14 Score=125.54 Aligned_cols=60 Identities=23% Similarity=0.381 Sum_probs=56.8
Q ss_pred CCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 23 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 23 ~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
.++.|+.||++|+..||..|+.++||+..++.+||.++ ||+++||++||||||+|+|+.+
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKIT----GLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CcCHHHeeeCChhHhHHHHhhC
Confidence 35778999999999999999999999999999999999 9999999999999999999854
No 49
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.44 E-value=2.3e-14 Score=128.76 Aligned_cols=59 Identities=17% Similarity=0.365 Sum_probs=54.6
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHH
Q 003071 25 GKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKE 87 (850)
Q Consensus 25 r~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~ 87 (850)
+++.+||.+|+.+||+.|..++||+...|.+||..| ||+++||++||||||+|+|++.+
T Consensus 13 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----gLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 13 QKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQT----KLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHSCCS
T ss_pred hhhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CcChHHCeecccccchHHHHHHH
Confidence 345599999999999999999999999999999999 99999999999999999998543
No 50
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=4.1e-14 Score=126.88 Aligned_cols=58 Identities=24% Similarity=0.396 Sum_probs=54.0
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 25 GKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 25 r~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
.++.++|.+|+..||..|..++||+...|.+||.++ ||+++||++||||||+|+|+++
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~----~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVET----KLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHh----CCCHHhccHhhHhHHHHHHHHh
Confidence 455679999999999999999999999999999999 9999999999999999998743
No 51
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2e-14 Score=125.01 Aligned_cols=59 Identities=19% Similarity=0.346 Sum_probs=55.4
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 24 NGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 24 rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
.+.|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVT----GLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHH----CCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CCChHHhhHHhHHHhHHHHHhc
Confidence 3458899999999999999999999999999999999 9999999999999999999743
No 52
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.41 E-value=3.4e-14 Score=117.81 Aligned_cols=55 Identities=31% Similarity=0.500 Sum_probs=52.9
Q ss_pred CcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHH
Q 003071 26 KYVRYTPEQVEALERLYHE---CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (850)
Q Consensus 26 ~R~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 84 (850)
++++||.+|+..||..|.. ++||+..++.+||.++ ||+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHccccc
Confidence 4689999999999999999 9999999999999999 99999999999999999986
No 53
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.41 E-value=1.6e-14 Score=124.69 Aligned_cols=58 Identities=21% Similarity=0.383 Sum_probs=54.6
Q ss_pred CCCCcccCCHHHHHHHHHhH-hcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHH
Q 003071 23 DNGKYVRYTPEQVEALERLY-HECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (850)
Q Consensus 23 ~rr~R~r~T~~Ql~~LE~~F-~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 84 (850)
+.+++.+++.+|+..||..| +.++||+..+|.+||.++ ||+++||++||||||+|+|+
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l----~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQL----DWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CCChhhcchhhhhcccCCCC
Confidence 35667789999999999999 999999999999999999 99999999999999999986
No 54
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.40 E-value=6.6e-14 Score=120.60 Aligned_cols=59 Identities=27% Similarity=0.534 Sum_probs=56.2
Q ss_pred CCCcccCCHHHHHHHHHhH---hcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 24 NGKYVRYTPEQVEALERLY---HECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 24 rr~R~r~T~~Ql~~LE~~F---~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
+++|++||.+|+..||..| ..++||+...+.+||.++ ||+++||++||||||+|+|++.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~ 63 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNI 63 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhccccc
Confidence 5788999999999999999 999999999999999999 9999999999999999999844
No 55
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.40 E-value=6.8e-14 Score=124.41 Aligned_cols=59 Identities=27% Similarity=0.534 Sum_probs=55.7
Q ss_pred CCCcccCCHHHHHHHHHhH---hcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 24 NGKYVRYTPEQVEALERLY---HECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 24 rr~R~r~T~~Ql~~LE~~F---~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
+|+|++||.+|+..||..| ..++||+..+|.+||.++ ||+++||++||||||+|+|++.
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~ 63 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNI 63 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhcc
Confidence 5788999999999999999 899999999999999999 9999999999999999999854
No 56
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.39 E-value=9.9e-14 Score=122.81 Aligned_cols=61 Identities=25% Similarity=0.262 Sum_probs=56.2
Q ss_pred CCCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHE---CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
..+++|++|+.+|+..||.+|.+ +|||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~----gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKT----NLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHhhHHhhhhHhhhcHHH
Confidence 34678899999999999999988 5999999999999999 9999999999999999998743
No 57
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.39 E-value=3.2e-14 Score=138.64 Aligned_cols=62 Identities=34% Similarity=0.476 Sum_probs=55.4
Q ss_pred CCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHH
Q 003071 20 MIMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 85 (850)
Q Consensus 20 ~~~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr 85 (850)
..+.+|+|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|++
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEEL----NLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHh----CCChhhchhhhHhhhhhhhcc
Confidence 33557789999999999999999999999999999999999 999999999999999999974
No 58
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.39 E-value=2.8e-14 Score=119.79 Aligned_cols=58 Identities=26% Similarity=0.486 Sum_probs=55.1
Q ss_pred CCCCcccCCHHHHHHHHHhH---hcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHH
Q 003071 23 DNGKYVRYTPEQVEALERLY---HECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (850)
Q Consensus 23 ~rr~R~r~T~~Ql~~LE~~F---~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 84 (850)
++++|++||.+|+..||..| ..++||+..++.+||.++ ||+++||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhcc
Confidence 36788999999999999999 899999999999999999 99999999999999999875
No 59
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.38 E-value=5.5e-14 Score=138.88 Aligned_cols=60 Identities=32% Similarity=0.443 Sum_probs=54.5
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 85 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr 85 (850)
+.+|+|+.||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+||+
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQL----NMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH----CCChHHhhHhhHHhhhhhhcc
Confidence 457889999999999999999999999999999999999 999999999999999999973
No 60
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.37 E-value=1.2e-13 Score=123.16 Aligned_cols=58 Identities=29% Similarity=0.445 Sum_probs=55.0
Q ss_pred CCCCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHE---CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 83 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~K 83 (850)
.++++|++||.+|+..||..|.. ++||+..+|.+||.++ ||+++||++||||||+|+|
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~----gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhcc
Confidence 34677899999999999999999 9999999999999999 9999999999999999987
No 61
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.37 E-value=1.6e-13 Score=116.39 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=54.3
Q ss_pred CCCCCcccCCHHHHHHHHHhHhc-CCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHE-CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 83 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~-~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~K 83 (850)
+.+|.|+.|+.+|+..|+..|+. ++||+...|++||.++ ||++++|++||||||--.|
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~t----GL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQL----DLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCCHHHHHHhhccceeeec
Confidence 55789999999999999999999 9999999999999999 9999999999999996543
No 62
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.36 E-value=1.3e-13 Score=116.84 Aligned_cols=53 Identities=25% Similarity=0.404 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 30 YTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 30 ~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
-|.+|+.+||+.|..++||+..+|.+||..+ ||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~t----gLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVT----GLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CcCHHHhhHhcccchhhhhccC
Confidence 4789999999999999999999999999999 9999999999999999999743
No 63
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.36 E-value=1.1e-13 Score=122.33 Aligned_cols=59 Identities=27% Similarity=0.415 Sum_probs=54.2
Q ss_pred CCCcccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 24 NGKYVRYTPEQVEALERLYHE---CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 24 rr~R~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
++++++||.+|+..||..|.. ++||+..+|.+||.++ ||+++||++||||||+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~----gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNT----SLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHH----CCCHHHcccccHHHHccccccc
Confidence 456777999999999999999 9999999999999999 9999999999999999999853
No 64
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.35 E-value=6.2e-14 Score=120.25 Aligned_cols=55 Identities=31% Similarity=0.527 Sum_probs=52.2
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 28 VRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 28 ~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
..+|+.|+..||+.|+.++||+...|.+||.++ ||+++||++||||||+|+|+++
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l----~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNL----KLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHSCCSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh----CCChhheeecchhhhhhhhhhh
Confidence 468999999999999999999999999999999 9999999999999999999754
No 65
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.35 E-value=1.7e-13 Score=133.98 Aligned_cols=60 Identities=27% Similarity=0.554 Sum_probs=56.8
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHH
Q 003071 21 IMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (850)
Q Consensus 21 ~~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 84 (850)
.+++|+|++||.+|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKEL----NYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH----CCCHHHhHHHHHHHHhccCC
Confidence 3557889999999999999999999999999999999999 99999999999999999985
No 66
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.9e-13 Score=124.08 Aligned_cols=67 Identities=24% Similarity=0.444 Sum_probs=58.1
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcC-------------ccC----CCCcceEEeecccchhHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECP-------------ILS----NIEPKQIKVWFQNRRCREKQ 84 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~-------------~~~----gL~~rQVkvWFQNRRak~Kr 84 (850)
..+|+|+.|++.|+..||+.|..++||+...|.+||.+|- .++ ++++.+|++||||||+|+|+
T Consensus 5 ~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~kr 84 (102)
T 2da6_A 5 SSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAF 84 (102)
T ss_dssp CSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHHH
Confidence 4578899999999999999999999999999999999981 011 47899999999999999998
Q ss_pred HHHH
Q 003071 85 RKEA 88 (850)
Q Consensus 85 r~~~ 88 (850)
++..
T Consensus 85 ~~~~ 88 (102)
T 2da6_A 85 RQKL 88 (102)
T ss_dssp HHHH
T ss_pred hhHh
Confidence 6543
No 67
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.35 E-value=6e-14 Score=128.36 Aligned_cols=63 Identities=24% Similarity=0.421 Sum_probs=53.8
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHh------------------cCccCC---CCcceEEeecccch
Q 003071 21 IMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRE------------------CPILSN---IEPKQIKVWFQNRR 79 (850)
Q Consensus 21 ~~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~------------------L~~~~g---L~~rQVkvWFQNRR 79 (850)
++.+|+|+.||+.|+..||..|..++||+...|.+||.+ | | |++.||++||||||
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~l----g~~~lse~qV~vWFqNRR 82 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGL----GSNLVTEVRVYNWFANRR 82 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTT----GGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcccccccccccccccccc----CccccCcceeeeccHHHH
Confidence 355788999999999999999999999999999999999 7 8 99999999999999
Q ss_pred hHHHHHHH
Q 003071 80 CREKQRKE 87 (850)
Q Consensus 80 ak~Krr~~ 87 (850)
+++|+++.
T Consensus 83 ~k~k~k~~ 90 (99)
T 1lfb_A 83 KEEAFRHK 90 (99)
T ss_dssp HTTSCCC-
T ss_pred HHHHHhch
Confidence 99987653
No 68
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.34 E-value=1.1e-13 Score=137.34 Aligned_cols=62 Identities=31% Similarity=0.455 Sum_probs=51.6
Q ss_pred CCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHH
Q 003071 21 IMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRK 86 (850)
Q Consensus 21 ~~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~ 86 (850)
.+.+|+|++||..|+..||..|..++||+..+|.+||.++ ||+++||++||||||+|+|+++
T Consensus 97 ~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 97 GRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSL----QLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTBSC
T ss_pred ccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CCChhhhhhhhHHhhHHHhhcc
Confidence 3557889999999999999999999999999999999999 9999999999999999999854
No 69
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.33 E-value=1.6e-12 Score=135.62 Aligned_cols=175 Identities=23% Similarity=0.318 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHhcCCCcceEeCCCCCCCCCccceee--ccCCCccceecceeEEeeChhhHH-HHhcCchhhhhhCCc
Q 003071 174 SIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVA--ISHGCTGVAARACGLVGLDPTRVA-EILKDRPSWYRDCRS 250 (850)
Q Consensus 174 ~lA~~am~El~~la~~~~plWi~~~g~~~g~~~~~~~~--~~~~~~~EASR~~glV~m~~~~LV-e~lmD~~~W~~~f~~ 250 (850)
.++++++.|+++.+.....-|-.... +.| +.++- ...|...-.-|..++|...+.+++ ++|.|+.+|-..|..
T Consensus 32 ~~l~~~~~~ll~~~~~~~~gW~~~~~-~~g---i~V~~k~~~~~~~~~~~K~~~~v~~~~~~v~~~ll~dr~~Wd~~~~~ 107 (237)
T 2pso_A 32 TYLNHLIQGLQKEAKEKFKGWVTCSS-TDN---TDLAFKKVGDGNPLKLWKASVEVEAPPSVVLNRVLRERHLWDEDFVQ 107 (237)
T ss_dssp CCCCCHHHHHHHHHHHHCCSCEEECC-SSS---CEEEEECCCSSCCCCEEEEEEEESSCHHHHHHHHHHCGGGTCTTBCC
T ss_pred HHHHHHHHHHHHHhhcCCCCCEEEec-CCC---eEEEEEEcCCCCCcEEEEEEEEEcCChHHHHHHHHhhhhhHHhhhce
Confidence 34567788888777544556977532 122 22221 123444456688888888777764 789999999999999
Q ss_pred ceEEeeccCCCcchHHHHHHHhhccccccCCceeeEEeecee-eCCCcEEEEEeecCCCCCCCCCCCCCCccceeecCcc
Q 003071 251 VEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSV-LEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSG 329 (850)
Q Consensus 251 ~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq-~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSG 329 (850)
.++|+.+... -.++|..+..|.| +++|||.++||.++ +++|.++||-.|++.. ..|+. .|+|+..+++|
T Consensus 108 ~~vle~id~~----~~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~----~~P~~-g~VR~~~~~~g 177 (237)
T 2pso_A 108 WKVVETLDRQ----TEIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEHE----EAQLL-GGVRAVVMDSQ 177 (237)
T ss_dssp CEEEEEEETT----EEEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCCT----TCCCC-SSEECCEEEEE
T ss_pred EEEEEEcCCC----cEEEEEEecCCCC-cCCeEEEEEEEEEEECCCCEEEEEEEcccCC----CCCCC-CcEEEEEeccE
Confidence 9999988743 2345555665555 79999999999985 7899999999999842 34555 89999999999
Q ss_pred eEEeeCCCCceEEEEEEeeeccCCCccccchhhh
Q 003071 330 YLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLY 363 (850)
Q Consensus 330 clIq~~~nG~skVtwVeH~e~d~~~vh~lyRpl~ 363 (850)
++|+++++|.|+|||+-|++.. ..+|.-+..++
T Consensus 178 ~~i~P~~~~~t~vt~~~~~Dp~-G~iP~~ln~~~ 210 (237)
T 2pso_A 178 YLIEPCGSGKSRLTHICRIDLK-GHSPEWYSKGF 210 (237)
T ss_dssp EEEEECSTTCEEEEEEEEECCS-SSCTTTTTTHH
T ss_pred EEEEECCCCCEEEEEEEEeCCC-CCchHHHHHHH
Confidence 9999999999999999999987 56776554433
No 70
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=1.9e-13 Score=115.50 Aligned_cols=53 Identities=15% Similarity=0.268 Sum_probs=49.7
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHH
Q 003071 28 VRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (850)
Q Consensus 28 ~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 84 (850)
..++.+|+..||..|..++||+...|.+||.++ ||+++||++||||||+|.|+
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l----~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSV----NLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHh----CcChhhcCcchhcccCCCCC
Confidence 456789999999999999999999999999999 99999999999999998764
No 71
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.30 E-value=1.5e-11 Score=126.62 Aligned_cols=197 Identities=14% Similarity=0.148 Sum_probs=143.4
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCcceEeCCCCCCCCCccceeeccCCCccceecceeEEeeChhhHH-HHhcC---chhhh
Q 003071 170 AGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPTRVA-EILKD---RPSWY 245 (850)
Q Consensus 170 ~~l~~lA~~am~El~~la~~~~plWi~~~g~~~g~~~~~~~~~~~~~~~EASR~~glV~m~~~~LV-e~lmD---~~~W~ 245 (850)
...+.++++|+++++.+... .--|-.....+.|-.++... . .+ .+-.-|..++|...+..+. ++|+| +.+|-
T Consensus 21 ~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~~~g~~vy~~~-~-~~-~g~~~k~~~~v~~~~~~v~~~~~~d~~~r~~Wd 96 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILAQ-EENWKFEKNNEYGDTVYTIE-V-PF-HGKTFILKTFLPCPAELVYQEVILQPERMVLWN 96 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-GGGCEEEEECTTCCEEEEEE-E-TT-TEEEEEEEEEESSCHHHHHHHTTTCHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCCCEEEEEe-c-CC-CCceEEEEEEecCCHHHHHHHHHhCccchhhcc
Confidence 35789999999999999863 34687642211221112111 0 11 1124589999999999998 66654 56888
Q ss_pred hhCCcceEEeeccCCCcchHHHHHHHhhcc--ccccCCceeeEEeeceeeCCCcEEEEEeecCCCCCCCCCCCCCCccce
Q 003071 246 RDCRSVEVVNVLPTGSSGTIELLYMQLYAP--TTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRA 323 (850)
Q Consensus 246 ~~f~~~~~l~~~~~g~~GalqLm~aE~~v~--SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~ 323 (850)
..|...++|..+..+.. + +-++..+ .++++.|||.++|+++.. ++.++||-.|++. +..|+...|+|+
T Consensus 97 ~~~~~~~vle~~~~~t~----I-~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~~Sv~~----~~~P~~~~~VR~ 166 (229)
T 1em2_A 97 KTVTACQILQRVEDNTL----I-SYDVSAGAAGGVVSPRDFVNVRRIERR-RDRYLSSGIATSH----SAKPPTHKYVRG 166 (229)
T ss_dssp TTEEEEEEEEEETTTEE----E-EEEEECCBTTTTBCCEEEEEEEEEEEC-SSEEEEEEEECCC----TTSCCCTTSEEC
T ss_pred cccceEEEEEecCCCeE----E-EEEEecCcCCCCcCCCeeEEEEEEEEc-CCEEEEEEecccC----CCCCCCCCCEee
Confidence 88888899998875421 2 3345544 578999999999999997 5669999999974 345566789999
Q ss_pred eecCcceEEeeCC--CCceEEEEEEeeeccCCCccccchhhhchhHHHHHHHHHHHHH-HHhhh
Q 003071 324 EMLPSGYLIRPCE--GGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLRQI 384 (850)
Q Consensus 324 rrlPSGclIq~~~--nG~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar~w~~aLr-~~e~l 384 (850)
..+++|++|++++ +|.|+|||+-|++..-+ +| +.++++.+.-+.--++..|| +|+.+
T Consensus 167 ~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~l~n~~~~~~~~~~~~~Lr~~~~~~ 226 (229)
T 1em2_A 167 ENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LP---RYLIHQSLAATMFEFAFHLRQRISEL 226 (229)
T ss_dssp EECSEEEEEEECSSCTTCEEEEEEECEECCSS-SC---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eecccEEEEEecCCCCCcEEEEEEEEECCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999987 67899999999988765 66 57787777666667788886 67654
No 72
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.30 E-value=4.4e-13 Score=131.78 Aligned_cols=59 Identities=25% Similarity=0.454 Sum_probs=56.4
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 84 (850)
+.+|+|++||..|+..||..|..++||+...|.+||.++ ||+++||++||||||+|+|+
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~Kr 153 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQL----GLEKDVVRVWFSNRRQKGKR 153 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHc----CCChhheeeccccccccccC
Confidence 446789999999999999999999999999999999999 99999999999999999997
No 73
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.30 E-value=1.3e-11 Score=126.45 Aligned_cols=195 Identities=20% Similarity=0.283 Sum_probs=143.2
Q ss_pred hhHHHHHHHHHHHHHHhcCCCcceEeCCCCCCCCCccceeeccCCCccceecceeEEeeChhhHHHHhc-C---chhhhh
Q 003071 171 GLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPTRVAEILK-D---RPSWYR 246 (850)
Q Consensus 171 ~l~~lA~~am~El~~la~~~~plWi~~~g~~~g~~~~~~~~~~~~~~~EASR~~glV~m~~~~LVe~lm-D---~~~W~~ 246 (850)
-...+|++||++++.+... +.-|-.....+.|-.++... . .+. +-.=|..++|...+.++.+.|+ | +.+|-.
T Consensus 11 ~y~~~~~~~~~~~l~~~~~-~~gW~~~~~~~~gv~vy~~~-~-~~~-g~~~k~~~~v~~~~~~v~~~l~~d~~~r~~Wd~ 86 (221)
T 3p0l_A 11 AYLQQGEEAMQKALGILSN-QEGWKKESQQDNGDKVMSKV-V-PDV-GKVFRLEVVVDQPMERLYEELVERMEAMGEWNP 86 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHS-CTTCEEEEECTTSCEEEEEE-C-SSS-CEEEEEEEEESSCHHHHHHHHTTTGGGTTTSCT
T ss_pred HHHHHHHHHHHHHHHHHhC-CCCCeEeeecCCCcEEEEEE-c-CCC-ceEEEEEEEEcCCHHHHHHHHHhccchhhhcCc
Confidence 4678999999999999763 44698752112232222111 1 122 3556999999999999999984 5 678999
Q ss_pred hCCcceEEeeccCCCcchHHHHHHHh-hccccccCCceeeEEeeceeeCCCcEEEEEeecCCCCCCCCCCCCCCccceee
Q 003071 247 DCRSVEVVNVLPTGSSGTIELLYMQL-YAPTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEM 325 (850)
Q Consensus 247 ~f~~~~~l~~~~~g~~GalqLm~aE~-~v~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rr 325 (850)
.|...++|+.+... + .+.|... ..+.+++++|||.++||.++. +|.++|+-.|++. +..|+...|+|+..
T Consensus 87 ~~~~~~vle~~~~~---t-~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~~----~~~P~~~g~VR~~~ 157 (221)
T 3p0l_A 87 NVKEIKVLQKIGKD---T-FITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMATDF----GNMPEQKGVIRAEH 157 (221)
T ss_dssp TCSEEEEEEECSSS---E-EEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEECCC----TTSCCCTTSEECEE
T ss_pred chheEEEEEecCCC---e-EEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEeccC----CCCCCCCCeEEEec
Confidence 99999999988753 2 2333221 123468999999999999985 6899999999873 33455678999999
Q ss_pred cCcceEEeeCCCC--ceEEEEEEeeeccCCCccccchhhhchhHHHHHHHHHHHHH-HHh
Q 003071 326 LPSGYLIRPCEGG--GSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLR 382 (850)
Q Consensus 326 lPSGclIq~~~nG--~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar~w~~aLr-~~e 382 (850)
+++|++|+++++| .|+|||+-|++..-+ +| +.+++..+.-+.--++..|| +|+
T Consensus 158 ~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 158 GPTCMVLHPLAGSPSKTKLTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp CSCEEEEEEETTEEEEEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cceEEEEEECCCCCCcEEEEEEEEecCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988 999999999998766 55 35666666666667888886 665
No 74
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.29 E-value=2.3e-13 Score=115.05 Aligned_cols=49 Identities=24% Similarity=0.504 Sum_probs=46.1
Q ss_pred HHHHHHHHHhH-hcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHH
Q 003071 32 PEQVEALERLY-HECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ 84 (850)
Q Consensus 32 ~~Ql~~LE~~F-~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Kr 84 (850)
+.|+.+||+.| ..++||+..+|.+||++| ||+++||++||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l----~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQL----DWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHH----CSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHh----CCCHHHHHHHHHHHHhccCC
Confidence 46899999999 678999999999999999 99999999999999999885
No 75
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.25 E-value=6.3e-13 Score=131.50 Aligned_cols=60 Identities=18% Similarity=0.302 Sum_probs=54.4
Q ss_pred CCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHH
Q 003071 22 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 85 (850)
Q Consensus 22 ~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr 85 (850)
..+|+|+.||.+|+..||..|+.++||+...|.+||.++ ||+++||++||||||+|+|+.
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l----~L~~~qV~~WFqNrR~r~k~~ 155 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQL----GLELSTVSNFFMNARRRSLDK 155 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTSSCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----CcCHHHhhhcChhhhcccccc
Confidence 457889999999999999999999999999999999999 999999999999999999874
No 76
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.19 E-value=3.6e-12 Score=108.44 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=49.6
Q ss_pred cCCHHHHHHHHHhHh---cCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHH
Q 003071 29 RYTPEQVEALERLYH---ECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 85 (850)
Q Consensus 29 r~T~~Ql~~LE~~F~---~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr 85 (850)
+|+.+|+..||..|. .+|||+...|.+||.++ ||+++||++||||||+|+|+.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~ 59 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDT----GLTILQVNNWFINARRRIVQP 59 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHh----CcCHHHhhhhhHHHHHHHhHH
Confidence 799999999999999 99999999999999999 999999999999999999974
No 77
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.12 E-value=2.9e-12 Score=130.32 Aligned_cols=61 Identities=26% Similarity=0.486 Sum_probs=53.5
Q ss_pred CCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCC---------------------CCcceEEeecccc
Q 003071 20 MIMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSN---------------------IEPKQIKVWFQNR 78 (850)
Q Consensus 20 ~~~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~g---------------------L~~rQVkvWFQNR 78 (850)
.++.+|+|+.|++.|+..||+.|..++||+...|.+||..| | |++.||++|||||
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~----~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNR 187 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEEC----NRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANR 187 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHH----HHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHH
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----CchhhccccccccccccccccccCccccchhchhh
Confidence 34567889999999999999999999999999999999999 9 9999999999999
Q ss_pred hhHHHH
Q 003071 79 RCREKQ 84 (850)
Q Consensus 79 Rak~Kr 84 (850)
|+|+|.
T Consensus 188 R~~~k~ 193 (194)
T 1ic8_A 188 RKEEAF 193 (194)
T ss_dssp HHHCC-
T ss_pred hhhhhc
Confidence 998875
No 78
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.95 E-value=2.3e-10 Score=102.49 Aligned_cols=54 Identities=24% Similarity=0.295 Sum_probs=51.1
Q ss_pred ccCCHHHHHHHHHhHhc---CCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHH
Q 003071 28 VRYTPEQVEALERLYHE---CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQR 85 (850)
Q Consensus 28 ~r~T~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr 85 (850)
+-|+.+++..|+.+|.+ +|||+..+|.+||+++ ||+++||++||||||.|+|+.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~t----gLt~~QV~~WF~NrR~R~kk~ 66 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQT----HLSTLQVCNWFINARRRLLPD 66 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHS----SSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhH
Confidence 46899999999999988 8999999999999999 999999999999999999874
No 79
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=98.95 E-value=1.4e-09 Score=110.14 Aligned_cols=151 Identities=17% Similarity=0.263 Sum_probs=116.8
Q ss_pred ceecceeEEe-eChhhHHHHhcC---chhhhhhCCcceEEeeccCCCcchHHHHHHHhhccccccCCceeeEEeeceeeC
Q 003071 219 VAARACGLVG-LDPTRVAEILKD---RPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLE 294 (850)
Q Consensus 219 EASR~~glV~-m~~~~LVe~lmD---~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~ 294 (850)
-.-|..++|. ..+..+.+.|+| +.+|...+...++++. .| . .++|.++..|.|+ ..|||.++|+++.++
T Consensus 52 ~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~--~~--~--~i~~~~~~~p~p~-~~RD~v~~~~~~~~~ 124 (214)
T 1ln1_A 52 YEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQEC--NG--E--TVVYWEVKYPFPM-SNRDYVYLRQRRDLD 124 (214)
T ss_dssp EEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEE--TT--E--EEEEEEECCCTTS-CCEEEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHHhhEEEecc--CC--C--EEEEEEEEcCCCC-CCceEEEEEEEEecc
Confidence 4569999995 999999999999 7889988888888765 22 2 2678888888886 999999999999875
Q ss_pred -CC--cEEEEEeecCCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCCCccccchhhhchhHHHHH
Q 003071 295 -DG--SLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQ 371 (850)
Q Consensus 295 -~G--~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afga 371 (850)
+| .|+|+-.|++.. ..|+...++|.+.+++|++|++.++|.|+||++-|++.. ..+|.- +++..+.-+.
T Consensus 125 ~~g~~~~~i~~~Sv~~p----~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~-G~iP~~---l~n~~~~~~~ 196 (214)
T 1ln1_A 125 MEGRKIHVILARSTSMP----QLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GQIPSW---LINWAAKNGV 196 (214)
T ss_dssp STTCCEEEEEEEECCBT----TBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCS-SCCCHH---HHHHHHHTHH
T ss_pred cCCCeEEEEEEecccCC----CCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCC-CcccHH---HHHHHHHHHh
Confidence 66 499999999753 345556899999999999999999999999999999987 567753 3333333344
Q ss_pred HHHHHHHH-HHhhh
Q 003071 372 KTTMAALR-HLRQI 384 (850)
Q Consensus 372 r~w~~aLr-~~e~l 384 (850)
-.++..|| +|+..
T Consensus 197 ~~~l~~l~k~~~~y 210 (214)
T 1ln1_A 197 PNFLKDMARACQNY 210 (214)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc
Confidence 45555664 45543
No 80
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.91 E-value=1.9e-10 Score=118.49 Aligned_cols=59 Identities=27% Similarity=0.498 Sum_probs=52.4
Q ss_pred CCCCCCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCC---------------------CCcceEEeecccc
Q 003071 20 MIMDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSN---------------------IEPKQIKVWFQNR 78 (850)
Q Consensus 20 ~~~~rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~g---------------------L~~rQVkvWFQNR 78 (850)
.++.+|.|+.|++.|+..||..|..++||+...|.+||..| | |++.||++|||||
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~----n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNR 214 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEEC----NRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANR 214 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH----HHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHH
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----ChhhhcccccccchhccccccccCHHHHHHHhHHh
Confidence 44567889999999999999999999999999999999998 6 7899999999999
Q ss_pred hhHH
Q 003071 79 RCRE 82 (850)
Q Consensus 79 Rak~ 82 (850)
|++.
T Consensus 215 R~~~ 218 (221)
T 2h8r_A 215 RKEE 218 (221)
T ss_dssp HTTC
T ss_pred hhhh
Confidence 9764
No 81
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.88 E-value=1.8e-09 Score=114.38 Aligned_cols=125 Identities=22% Similarity=0.347 Sum_probs=102.4
Q ss_pred ecceeEEeeChhhHHHHhcCc---hhhhhhCCcceEEeeccCCCcchHHHHHHHhhcccc--ccCCceeeEEeecee-eC
Q 003071 221 ARACGLVGLDPTRVAEILKDR---PSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTT--LAPARDFWLLRYTSV-LE 294 (850)
Q Consensus 221 SR~~glV~m~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SP--LVp~Re~~fLRyckq-~~ 294 (850)
=|..++|...+..|.+.|+|. .+|-..+...++|+.+... .++| ++..|+| ++++|||..|||.+. ..
T Consensus 90 ~k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~~~~~vle~id~~-----~ivY-~~~~p~~~~~v~~RDFV~lr~~r~~~~ 163 (258)
T 3fo5_A 90 FHMEMVVHVDAAQAFLLLSDLRQRPEWDKHYRSVELVQQVDED-----DAIY-HVTSPALGGHTKPQDFVILASRRKPCD 163 (258)
T ss_dssp EEEEEEESSCHHHHHHHHHCGGGGGGTCTTCCEEEEEEEEETT-----EEEE-EEEECCCTTCSSCEEEEEEEEEECCSS
T ss_pred EEEEEEEeCCHHHHHHHHhCchhHhHhhhhccEEEEEEEcCCC-----eEEE-EEecCCccCCCCCCEEEEEEEEEeccC
Confidence 388899999999999999886 4677778888888877644 2456 5667775 799999999999987 45
Q ss_pred CCc-EEEEEeecCCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCCCccc
Q 003071 295 DGS-LVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPE 357 (850)
Q Consensus 295 ~G~-waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~ 357 (850)
+|. .+|+-+|++. +..|+...|+|++.+|+||+|+++++|.|+||++-|++- ..+|.
T Consensus 164 ~G~~yvi~~~SV~h----p~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dp--G~lP~ 221 (258)
T 3fo5_A 164 NGDPYVIALRSVTL----PTHRETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATP--GVLNY 221 (258)
T ss_dssp TTCCEEEEEEEEEC----TTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCG--GGHHH
T ss_pred CCCEEEEEEEeccC----CCCCCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCC--CCCCc
Confidence 775 9999999984 345667789999999999999999999999999988873 44543
No 82
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=3.6e-10 Score=96.54 Aligned_cols=46 Identities=17% Similarity=0.370 Sum_probs=44.1
Q ss_pred HHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhH
Q 003071 32 PEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCR 81 (850)
Q Consensus 32 ~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak 81 (850)
.+|+..||..|..+++|+..++.+||..+ ||+.++||+||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~l----gL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAV----GLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHh----CCCHHHHHHHHhhcccc
Confidence 57899999999999999999999999999 99999999999999974
No 83
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=98.86 E-value=3.7e-08 Score=101.23 Aligned_cols=190 Identities=21% Similarity=0.316 Sum_probs=132.9
Q ss_pred hhHHHHHHHHHHHHHHhcCCCcceEeCCCCCCCCCccceeec-cCCCccceecceeEEeeChhhHHHHhcCch---hhhh
Q 003071 171 GLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAI-SHGCTGVAARACGLVGLDPTRVAEILKDRP---SWYR 246 (850)
Q Consensus 171 ~l~~lA~~am~El~~la~~~~plWi~~~g~~~g~~~~~~~~~-~~~~~~EASR~~glV~m~~~~LVe~lmD~~---~W~~ 246 (850)
.+.+.+.++|..+..+ .+.-|-.... +.| +.++-. ..+..+-.-|..++|...+..|.+.|+|.. +|-.
T Consensus 25 ~~~~~~~e~l~~~~~~---~~~~W~~~~~-~~g---v~vy~~~~~~~~~~~~k~~~~v~~~~~~v~~~l~d~~~r~~Wd~ 97 (224)
T 1jss_A 25 SISTKLQNTLIQYHSI---EEDEWRVAKK-AKD---VTVWRKPSEEFNGYLYKAQGVMDDVVNNVIDHIRPGPWRLDWDR 97 (224)
T ss_dssp THHHHHHHHHHHHTTS---CGGGCEEEEE-ETT---EEEEEEECSSSSSEEEEEEEEESSCHHHHHHHHSSSTTHHHHCS
T ss_pred HHHHHHHHHHHHHhhh---CCCCCEEEEE-CCC---EEEEEEeccCCCceEEEEEEEEeCCHHHHHHHHhCccccccccc
Confidence 3555555555555443 3556966421 111 222221 223344556999999999999999999965 8988
Q ss_pred hCCcceEEeeccCCCcchHHHHHHHhhc-cccccCCceeeEEeeceeeCCCcEEEEEeecCCCCCCCCCCCCCCccceee
Q 003071 247 DCRSVEVVNVLPTGSSGTIELLYMQLYA-PTTLAPARDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSMPQAPHFVRAEM 325 (850)
Q Consensus 247 ~f~~~~~l~~~~~g~~GalqLm~aE~~v-~SPLVp~Re~~fLRyckq~~~G~waVvDvSld~~~~~~~~~~~~~~~r~rr 325 (850)
.|-..++|+.+.... .+.|.-+.- +-|++..|||.++|+.++.++| ++|+-+|++.. ..+ +.++|++.
T Consensus 98 ~~~~~~vle~id~~~----~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv~hp----~~~--~g~VR~~~ 166 (224)
T 1jss_A 98 LMTSLDVLEHFEENC----CVMRYTTAGQLLNIISPREFVDFSYTVGYEEG-LLSCGVSVEWS----ETR--PEFVRGYN 166 (224)
T ss_dssp SEEEEEEEEECSTTE----EEEEEEECCBTTTTBCCEEEEEEEEEEEETTE-EEEEEEECCCC----CCC--TTSEECEE
T ss_pred ceeeEEEEEEcCCCe----EEEEEEcccccCCCCCCCeEEEEEEEEEcCCe-EEEEEeeeecC----CCC--CCCEEEEe
Confidence 888888888775331 233333332 3457999999999999998777 78899998742 222 37899999
Q ss_pred cCcceEEeeCCCC--ceEEEEEEeeeccCCCccccchhhhchhHHHHHHHHHHHHH-HHh
Q 003071 326 LPSGYLIRPCEGG--GSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLR 382 (850)
Q Consensus 326 lPSGclIq~~~nG--~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar~w~~aLr-~~e 382 (850)
+++|++|+++++| .|+|||+-|++..-+ +| +.+++..+.-+...++..|| +|+
T Consensus 167 ~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 167 HPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IP---QSAVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp CSEEEEEEEETTEEEEEEEEEEECEECCSC-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cccEEEEEEcCCCCCceEEEEEEEeCCCCC-cc---HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 9999999999875 899999999998754 55 36777666667777888886 554
No 84
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.77 E-value=6.6e-10 Score=122.33 Aligned_cols=56 Identities=27% Similarity=0.592 Sum_probs=52.4
Q ss_pred CCCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHH
Q 003071 24 NGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREK 83 (850)
Q Consensus 24 rr~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~K 83 (850)
++.+..++.+|+..||+.|+.++||+..+|.+||+++ ||+++||++||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~----~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHH----CcCHHHhhHhhhhcccccC
Confidence 3456789999999999999999999999999999999 9999999999999999875
No 85
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=98.39 E-value=1.7e-06 Score=90.32 Aligned_cols=195 Identities=16% Similarity=0.233 Sum_probs=129.2
Q ss_pred hhHHHHHHHHHHHHHHhcC---CCcceEeCCCCCCCCCccceeec---cCCCccceecceeEEe-eChhhHHHHhcC---
Q 003071 171 GLLSIAEETLTEFLSKATG---TAVEWVQMPGMKPGPDSIGIVAI---SHGCTGVAARACGLVG-LDPTRVAEILKD--- 240 (850)
Q Consensus 171 ~l~~lA~~am~El~~la~~---~~plWi~~~g~~~g~~~~~~~~~---~~~~~~EASR~~glV~-m~~~~LVe~lmD--- 240 (850)
.+.++++..+.|.+..+.. +..-|-.... +.| +.++-. ..|...-.=|..+.|. ..+..+.+.|+|
T Consensus 23 ~~~~~~~~~~~e~l~~~~~~~~~~~~W~~~~~-~~g---v~vy~~~~~~~g~~~~~~K~~~~~~~~~~~~v~~~l~d~~~ 98 (255)
T 2e3n_A 23 RFVQKVEEMVQNHMTYSLQDVGGDANWQLVVE-EGE---MKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDV 98 (255)
T ss_dssp TTHHHHHHHHHHHHHHTTSCCTTCTTEEEEEE-ETT---EEEEEECCEETTEECCCEEEEEEEETCCHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEe-CCC---EEEEEEEcCCCCceeeeEEEEEEEcCCCHHHHHHHHhCcch
Confidence 5677788888888888763 3456876421 112 211110 1111111246566665 789999999999
Q ss_pred chhhhhhCCcceEEeeccCCCcchHHHHHHHhhccccccCCceeeEEeeceee----CC--CcEEEEEeecCCCCCCCCC
Q 003071 241 RPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVL----ED--GSLVVCERSLNNTQNGPSM 314 (850)
Q Consensus 241 ~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~----~~--G~waVvDvSld~~~~~~~~ 314 (850)
+.+|-..+...++|+.+..+ + .++|..+..|.|+ ..|||.++|++++. ++ +.|+|+..|++.. ..
T Consensus 99 r~~Wd~~~~~~~vle~i~~~--~--~i~y~~~~~p~p~-s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~----~~ 169 (255)
T 2e3n_A 99 RNDWETTIENFHVVETLADN--A--IIIYQTHKRVWPA-SQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHD----SA 169 (255)
T ss_dssp HHHHCCSEEEEEEEEEEETT--E--EEEEEEECCCTTS-CCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCCT----TS
T ss_pred HhhhhhhcceeEEEEEcCCC--C--EEEEEEeecCCCc-CCceeEEEEEEEeccccccCCCCEEEEEEeccCCC----CC
Confidence 67888888888888887542 2 4667777788885 89999999999987 33 5999999999853 24
Q ss_pred CCCCCccceee---cCcceEEeeCCC--------CceEEEEEEeeeccCCCccccchhhhchhHHHHHHHHHHHHH-HHh
Q 003071 315 PQAPHFVRAEM---LPSGYLIRPCEG--------GGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HLR 382 (850)
Q Consensus 315 ~~~~~~~r~rr---lPSGclIq~~~n--------G~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar~w~~aLr-~~e 382 (850)
|+...++|... +.+|++|++..+ +.|+||++-|++..- .+|. -+++.....+.-..+..|| +++
T Consensus 170 P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G-~iP~---~lvn~~~~~~~~~~l~~L~k~v~ 245 (255)
T 2e3n_A 170 PLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGG-WAPA---SVLRAVAKREYPKFLKRFTSYVQ 245 (255)
T ss_dssp CCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSS-CCCH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCC-ccCH---HHHHHHHhccccHHHHHHHHHHH
Confidence 45567899985 679999998733 579999999998764 4664 2334334444444555664 444
No 86
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.38 E-value=9.9e-07 Score=87.64 Aligned_cols=149 Identities=21% Similarity=0.248 Sum_probs=103.4
Q ss_pred ceecceeEEeeChhhHHHHhcCc---hhhhhhCCcceEEeeccCCCcchHHHHHHHhhccccccCCceeeEEeeceeeCC
Q 003071 219 VAARACGLVGLDPTRVAEILKDR---PSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLED 295 (850)
Q Consensus 219 EASR~~glV~m~~~~LVe~lmD~---~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~ 295 (850)
-.=|..++|...+.++.+.|+|. ++|...|...++|+. . ++. .++|.++..|-| +..|||.++|+.+..++
T Consensus 27 ~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~~~~~vle~-~---~~~-~i~y~~~~~p~p-~~~RD~v~~~~~~~~~~ 100 (189)
T 3qsz_A 27 REFRGEVRLKAAADDVVKVLRDANAFRQWMPDVAASELLKA-T---DTE-QYHYLDNSAPWP-VSNRDGVYHFTYEKAGD 100 (189)
T ss_dssp CEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEEEEE-C---SSE-EEEEEEECCSSS-CCCEEEEEEEEEEECTT
T ss_pred EEEEEEEEEECCHHHHHHHHHhHHHhhhHHHhcCEEEEEee-c---CCc-eEEEEEeecCCC-cCCcceEEEEEEEECCC
Confidence 45688999999999999999995 455555656677776 2 222 234666666655 79999999999999888
Q ss_pred CcEEEEEeecCCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCCCccccchhhhchhHHHHHHHHH
Q 003071 296 GSLVVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTM 375 (850)
Q Consensus 296 G~waVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar~w~ 375 (850)
|...|+=.+ + .+..|+...++|.+.+++|++|++ .+|.|+||++-|+|..- .+|.- +++..+.-+.-.++
T Consensus 101 g~~~i~~~~-~----~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G-~iP~~---lvn~~~~~~~~~~l 170 (189)
T 3qsz_A 101 GAITVRVEA-V----PDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGG-SIPSW---LANQTVVETPFGTL 170 (189)
T ss_dssp SCEEEEEEE-C----TTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCS-SSCHH---HHHHTTTHHHHHHH
T ss_pred CeEEEEEEc-C----CCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCC-CCCHH---HHHHHHHHHHHHHH
Confidence 876554333 2 133455568899999999999999 99999999999998763 45542 23222222333455
Q ss_pred HHHH-HHhh
Q 003071 376 AALR-HLRQ 383 (850)
Q Consensus 376 ~aLr-~~e~ 383 (850)
..|| +|+.
T Consensus 171 ~~L~k~~~~ 179 (189)
T 3qsz_A 171 KALRSHLRQ 179 (189)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHhhh
Confidence 5664 4544
No 87
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.22 E-value=9.6e-08 Score=72.12 Aligned_cols=20 Identities=55% Similarity=0.896 Sum_probs=17.5
Q ss_pred ceEEeecccchhHHHHHHHH
Q 003071 69 KQIKVWFQNRRCREKQRKEA 88 (850)
Q Consensus 69 rQVkvWFQNRRak~Krr~~~ 88 (850)
+||+|||||||+|||+++.+
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 69999999999999986654
No 88
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=97.52 E-value=0.00073 Score=59.28 Aligned_cols=105 Identities=10% Similarity=-0.068 Sum_probs=79.8
Q ss_pred cCCCeEeecCCCC-CceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCc
Q 003071 741 HHSDAVLCCSLKA-LPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRP 819 (850)
Q Consensus 741 ~ap~avl~h~~~~-dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grr 819 (850)
++|.+|+..+.+. +-.++|+|.++.++|+++-+++.+.+...-..+..+......+.++...|-.....-....+.|+.
T Consensus 5 ~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~ 84 (128)
T 3t50_A 5 FTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKSGEA 84 (128)
T ss_dssp CCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCE
T ss_pred cCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEEcCCCCE
Confidence 4688888888754 779999999999999999999999997766655555555556666666665444444556788998
Q ss_pred EEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 820 ISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 820 f~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
++++ ..+-.+.|++|...|...++.+
T Consensus 85 ~~~~-~~~~~i~~~~g~~~~~~~~~~D 110 (128)
T 3t50_A 85 FWNR-LHISPVHNANGRLQHFVSSQLD 110 (128)
T ss_dssp EEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEE-EEEEEEECCCCCEEEEEEEEEE
Confidence 8875 4566678999999888777754
No 89
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=97.50 E-value=0.00091 Score=56.68 Aligned_cols=105 Identities=7% Similarity=-0.010 Sum_probs=77.0
Q ss_pred cCCCeEeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCc
Q 003071 741 HHSDAVLCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRP 819 (850)
Q Consensus 741 ~ap~avl~h~~~-~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grr 819 (850)
+.|.+|+..+.. ++-.++|+|.++.++|+++.+++.+.+...-..+..+......+.++.+.|-.....-....+.|+.
T Consensus 5 ~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 84 (115)
T 4eet_B 5 FIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKSGKK 84 (115)
T ss_dssp CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCE
T ss_pred cCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEecCCCCE
Confidence 468888877753 2779999999999999999999999997665555555555555666666554333333446788998
Q ss_pred EEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 820 ISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 820 f~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
++++ ..+-.+.|++|...|...++.+
T Consensus 85 ~~~~-~~~~~~~~~~g~~~~~~~~~~D 110 (115)
T 4eet_B 85 FWNL-LHLQPVRDQKGELQYFIGVQLD 110 (115)
T ss_dssp EEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEE-EEEEEEECCCCCEEEEEEEEEe
Confidence 8874 5666788999998888777654
No 90
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=97.45 E-value=0.0018 Score=54.49 Aligned_cols=111 Identities=9% Similarity=-0.064 Sum_probs=84.5
Q ss_pred hHHHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCee
Q 003071 733 ESILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGI 811 (850)
Q Consensus 733 ~~~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 811 (850)
+..++.+++ .|.+|+..+. +-.+.|+|.++.++|+++-+++.+.+...-..+..+......+.++.+.|-...+.-.
T Consensus 6 ~~~~~~~~~~~~~~i~~~d~--~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (124)
T 3lyx_A 6 LKQRAKAFDYVFDAIVVTDL--QGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGEIR 83 (124)
T ss_dssp HHHHHHGGGTCSSEEEEEET--TCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred HHHHHHHHhhcCceEEEECC--CCcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccceEE
Confidence 455677775 7899888874 5689999999999999999999999988555566666666667777777765444444
Q ss_pred EEccCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 812 CLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 812 Riss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
.....|+.++++ ..+-.+.|++|...|...++.+
T Consensus 84 ~~~~~g~~~~~~-~~~~~~~~~~g~~~~~~~~~~D 117 (124)
T 3lyx_A 84 MLHKDGHIGWIE-SMCVPIYGENYQMVGALGINRD 117 (124)
T ss_dssp EECTTSCEEEEE-EEEEEEECSTTCEEEEEEEEEE
T ss_pred EEccCCCEEEEE-EEEEEEECCCCCEEEEEEEEec
Confidence 567788888774 4666778999999888777754
No 91
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=97.44 E-value=0.00089 Score=61.51 Aligned_cols=112 Identities=6% Similarity=-0.064 Sum_probs=84.3
Q ss_pred HHHHHhh-cCCCeEeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCee
Q 003071 734 SILKTLW-HHSDAVLCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGI 811 (850)
Q Consensus 734 ~~~~~l~-~ap~avl~h~~~-~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 811 (850)
..++.++ ++|.+|+..+.+ +|-.++|+|.++.++|+++.+++.+.+...-..+..+......+.++...|-...+.-.
T Consensus 35 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 114 (166)
T 3ue6_A 35 YSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDTSVCLL 114 (166)
T ss_dssp CHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCceEEEEE
Confidence 3556666 489999988763 46789999999999999999999999977666555555555556666666654444444
Q ss_pred EEccCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 812 CLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 812 Riss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
...+.|+.++++ ..+--+.|++|...|...++.+
T Consensus 115 ~~~~~g~~~~~~-~~~~~i~~~~g~~~~~~~~~~D 148 (166)
T 3ue6_A 115 NYRQDGTTFWNL-FFVAGLRDSKGNIVNYVGVQSK 148 (166)
T ss_dssp EECTTSCEEEEE-EEEEEEECTTSCEEEEEEECCB
T ss_pred EEcCCCCEEEEE-EEEEeeeCCCCCEEEEEEEEEe
Confidence 567899999886 4566678999999988887765
No 92
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=97.31 E-value=0.0016 Score=57.32 Aligned_cols=103 Identities=6% Similarity=0.003 Sum_probs=70.5
Q ss_pred CCeEeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcEE
Q 003071 743 SDAVLCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPIS 821 (850)
Q Consensus 743 p~avl~h~~~-~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~ 821 (850)
+.+|+..+.. +|-.++|+|.++.+|++|+-+|+++-+.+.-..+....+..+.+.++.+.|-.....-....+.|+.|+
T Consensus 3 ~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~~ 82 (109)
T 1n9l_A 3 RHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPFW 82 (109)
T ss_dssp SCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEEE
T ss_pred ccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEEE
Confidence 5667766654 577899999999999999999999987655443433333333344444444332223345679999998
Q ss_pred EeeeEEeEeecCCCceEEEEEeccc
Q 003071 822 YERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 822 i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
++- .+=-+.|++|...+...++.+
T Consensus 83 ~~~-~~~pi~d~~G~~~~~v~~~~D 106 (109)
T 1n9l_A 83 NLL-TVTPIKTPDGRVSKFVGVQVD 106 (109)
T ss_dssp EEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred EEE-EEEEEECCCCCEEEEEEEEEe
Confidence 865 455678999998887766644
No 93
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=97.26 E-value=0.0013 Score=61.75 Aligned_cols=112 Identities=8% Similarity=-0.015 Sum_probs=83.0
Q ss_pred HHHHHhh-cCCCeEeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCee
Q 003071 734 SILKTLW-HHSDAVLCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGI 811 (850)
Q Consensus 734 ~~~~~l~-~ap~avl~h~~~-~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 811 (850)
..++.++ +.|++|+..+.+ +|=.++|.|.++.++|+++-+++.+.+...-..+..+......+.++.+.|-.....-.
T Consensus 7 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 86 (176)
T 4hia_A 7 EKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVVLR 86 (176)
T ss_dssp HHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEEEE
Confidence 3456667 478998888765 45789999999999999999999999977666666655555666677766654443444
Q ss_pred EEccCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 812 CLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 812 Riss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
...+.|+.|+++ ..+-.+.|++|...|...++.+
T Consensus 87 ~~~~dG~~~~~~-~~~~pi~~~~g~~~~~~~~~~D 120 (176)
T 4hia_A 87 NYRANDEPFDNL-LFLHPVGGRPDAPDYFLGSQFE 120 (176)
T ss_dssp EECTTCCEEEEE-EEEEEESSBTTBCSEEEEEEEE
T ss_pred EEcCCCCEEEEE-EEEEEeeCCCCCeEEEEEEEEE
Confidence 567899999875 3455677899998887776654
No 94
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=97.22 E-value=0.0029 Score=55.88 Aligned_cols=109 Identities=15% Similarity=0.004 Sum_probs=74.7
Q ss_pred hHHHHHhh-cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCe-
Q 003071 733 ESILKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSG- 810 (850)
Q Consensus 733 ~~~~~~l~-~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G- 810 (850)
+..++.++ ++|++|+..+. +=.+.|.|+++.++|+|+-+|+++.+...-..+..+......+.++.++|- .+.|
T Consensus 4 ~~~~~~~~~~~~~~i~~~d~--~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~e 79 (120)
T 2gj3_A 4 PEIFRQTVEHAPIAISITDL--KANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKK--PWSGV 79 (120)
T ss_dssp HHHHHHHHHHCSSEEEEECT--TCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTC--CEEEE
T ss_pred HHHHHHHHHhCCCeEEEECC--CCCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCC--CEEEE
Confidence 34566677 48999988764 568999999999999999999999875543333333333334444555443 2233
Q ss_pred -eEEccCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 811 -ICLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 811 -vRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
....+.|+.|+++- .+=.+.|++|...+...++.+
T Consensus 80 ~~~~~~dG~~~~~~~-~~~pi~~~~g~~~~~v~~~~D 115 (120)
T 2gj3_A 80 LVNRRKDKTLYLAEL-TVAPVLNEAGETIYYLGMHRD 115 (120)
T ss_dssp EEEECTTSCEEEEEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEcCCCCEEEEEE-EEEEEECCCCCEEEEEEEecc
Confidence 34578999988754 445577999998887766654
No 95
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=97.16 E-value=0.0013 Score=55.84 Aligned_cols=109 Identities=7% Similarity=-0.047 Sum_probs=76.1
Q ss_pred HHHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeE
Q 003071 734 SILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC 812 (850)
Q Consensus 734 ~~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 812 (850)
+.++.+++ .|.+|+..+ .+=.+.|+|+++.++|+++-+++.+.+..--. +..++.....+.++.+.+-.....-..
T Consensus 3 ~~~~~~~~~~~~~i~~~d--~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFD--REMRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLAGEVIRVEEDCF 79 (114)
T ss_dssp HHHHHHHHTCSSEEEEEE--TTCBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHHHhcCCceEEEEc--CCcEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhcCCcceeeeeEE
Confidence 45667774 799998877 57789999999999999999999998876555 444455556666666644333222234
Q ss_pred EccCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 813 LSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 813 iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
..+.|+.++++ ..+-.+.|++|...|...++.+
T Consensus 80 ~~~~g~~~~~~-~~~~p~~~~~g~~~~~~~~~~D 112 (114)
T 3luq_A 80 VRADGRTQWLR-WEVRPWYEGEGRVGGVVIFTED 112 (114)
T ss_dssp EC--CCEEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EcCCCcEEEEE-EEEEEeECCCCCEEEEEEEEee
Confidence 56778887764 3455678999999888777654
No 96
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=97.16 E-value=0.0021 Score=65.17 Aligned_cols=112 Identities=10% Similarity=-0.020 Sum_probs=85.5
Q ss_pred HHHHHhh-cCCCeEeecCCCC-CceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCee
Q 003071 734 SILKTLW-HHSDAVLCCSLKA-LPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGI 811 (850)
Q Consensus 734 ~~~~~l~-~ap~avl~h~~~~-dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 811 (850)
..++.++ ++|.+|+..+.+. |=.++|.|.++.++|+|+-+|+.+.+...-..+.........+.++.+.|-.....-.
T Consensus 63 ~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e~~ 142 (258)
T 3p7n_A 63 QWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVLVEIL 142 (258)
T ss_dssp HHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCCeEEEEE
Confidence 4567777 4899999988754 6789999999999999999999999987766666655555566666666554444445
Q ss_pred EEccCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 812 CLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 812 Riss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
...+.|..|+++- .+-.+.|++|...|...++.+
T Consensus 143 ~~~~dG~~~~~~~-~~~pi~d~~g~~~~~v~~~~D 176 (258)
T 3p7n_A 143 NYKKDGTPFRNAV-LVAPIYDDDDELLYFLGSQVE 176 (258)
T ss_dssp EECTTSCEEEEEE-EEEEEECTTSCSEEEEEEEEE
T ss_pred EEcCCCCEEEEee-EEEEEEcCCCCEEEEEEEeee
Confidence 5688999998854 556678999999888777654
No 97
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=97.12 E-value=0.0038 Score=52.74 Aligned_cols=110 Identities=10% Similarity=0.036 Sum_probs=77.9
Q ss_pred HHHhhc-CCCeEeecC-CCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEE
Q 003071 736 LKTLWH-HSDAVLCCS-LKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICL 813 (850)
Q Consensus 736 ~~~l~~-ap~avl~h~-~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 813 (850)
++.+++ .|.+|+..+ ...+-.+.|.|.++.++|+++-+++.+.+...-..+.........+.++...|-.....-..+
T Consensus 8 ~~~~~~~~~~~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (130)
T 2z6d_A 8 LKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSYCGRLLNY 87 (130)
T ss_dssp HHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHHhcccceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCcceeEEEEE
Confidence 456664 788888877 235678999999999999999999999887665555544444455555555554333222345
Q ss_pred ccCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 814 SSMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 814 ss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
.+.|+.+++ ...+..+.|++|...|...++.+
T Consensus 88 ~~~g~~~~~-~~~~~~~~~~~g~~~~~~~~~~D 119 (130)
T 2z6d_A 88 KKDGTPFWN-LLTVTPIKDDQGNTIKFIGMQVE 119 (130)
T ss_dssp CTTSCEEEE-EEEEEEEECTTSCEEEEEEEEEE
T ss_pred cCCCcEEEE-EEEEEEEECCCCCeeEEEEEEec
Confidence 677888777 45666778999999888777754
No 98
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=97.08 E-value=0.0029 Score=57.89 Aligned_cols=113 Identities=10% Similarity=0.039 Sum_probs=82.8
Q ss_pred hHHHHHhhc-CCCeEeecCCCC-CceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCe
Q 003071 733 ESILKTLWH-HSDAVLCCSLKA-LPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSG 810 (850)
Q Consensus 733 ~~~~~~l~~-ap~avl~h~~~~-dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 810 (850)
+..++.+++ .|.+|+..+.+. +..++|+|.++.++|+++-+++.+.+...-..+..+......+.++...|-.....-
T Consensus 24 ~~~~~~i~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (162)
T 3sw1_A 24 AQLLQSMVDASNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPCREVL 103 (162)
T ss_dssp HHHHHHHHHTCSSEEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHhhccCcEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCCcceE
Confidence 456677774 789888877643 229999999999999999999999988766666555555556666666665443334
Q ss_pred eEEccCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 811 ICLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 811 vRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
..+...|+.++++ ..+-.+.|++|...|...++.+
T Consensus 104 ~~~~~~g~~~~~~-~~~~~i~~~~g~~~~~~~~~~D 138 (162)
T 3sw1_A 104 RNYRKDGSAFWNE-LSITPVKSDFDQRTYFIGIQKD 138 (162)
T ss_dssp EEECTTCCEEEEE-EEEEEEECSSSSCEEEEEEEEE
T ss_pred EEECCCCCEEEEE-EEEEEeecCCCCEEEEEEEEEe
Confidence 4457788888774 4566677899998888777654
No 99
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=97.05 E-value=0.0056 Score=50.24 Aligned_cols=100 Identities=7% Similarity=-0.028 Sum_probs=65.9
Q ss_pred EeecCCC-CCceeEcccHHHHHhhccCHHHhhcCc--cccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcEEE
Q 003071 746 VLCCSLK-ALPVFTFANQAGLDMLETTLVALQDIT--LEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISY 822 (850)
Q Consensus 746 vl~h~~~-~dP~f~yaN~aaL~l~e~~w~~l~~lp--sr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i 822 (850)
|+..+.. +|-.+.|+|+++.++|+++-+++.+.+ ...-..+.........+.++...|-.....-....+.|+.+++
T Consensus 4 i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 83 (110)
T 1byw_A 4 FIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLC 83 (110)
T ss_dssp EEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEE
T ss_pred EEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEEEE
Confidence 3433333 567899999999999999999999988 5555444433333344445555554333233345778888877
Q ss_pred eeeEEeEeecCCCceEEEEEeccc
Q 003071 823 ERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 823 ~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
+- .+-.+.|++|...|...++.+
T Consensus 84 ~~-~~~~~~~~~g~~~~~~~~~~D 106 (110)
T 1byw_A 84 LV-DVVPVKNEDGAVIMFILNFEV 106 (110)
T ss_dssp EE-EEEEEECTTCCEEEEEEEEEE
T ss_pred EE-EEEEeecCCCCEEEEEEEEEe
Confidence 43 445677889998887766654
No 100
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=96.94 E-value=0.0056 Score=55.47 Aligned_cols=107 Identities=11% Similarity=0.026 Sum_probs=72.4
Q ss_pred HhhcCCCeEeecCC-CCCceeEcccHHHHHhhccCHHHhhcCccccccCccc-----------hhHHhhhhHHHHHhccc
Q 003071 738 TLWHHSDAVLCCSL-KALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSG-----------RKTLCSEFPQIMQQGFM 805 (850)
Q Consensus 738 ~l~~ap~avl~h~~-~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~-----------r~er~~lL~~v~~qG~~ 805 (850)
.+++++.+|+..+. .++=.++|+|+++.+||+++-+|+.+.+...-..+.. ..+....+.++.++|-.
T Consensus 30 ~~~~~~~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (149)
T 3d72_A 30 GPVDTSVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAE 109 (149)
T ss_dssp CSCCTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCC
T ss_pred HhhcCCccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHCCCc
Confidence 34566777777653 2466899999999999999999999998765444431 33333344444454443
Q ss_pred cCCCeeEEccCCCcEEEeeeEEeEeecCCCceEEEEEecc
Q 003071 806 CLQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFI 845 (850)
Q Consensus 806 ~~y~GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~ 845 (850)
....-....+.|+.++++- .+--+.|++|...|...++.
T Consensus 110 ~~~e~~~~~~dG~~~~~~~-~~~~i~~~~g~~~~~v~~~~ 148 (149)
T 3d72_A 110 VQVEVVNFKKNGQRFVNFL-TMIPVRDETGEYRYSMGFQC 148 (149)
T ss_dssp EEEEEEEECTTCCEEEEEE-EEEEEECTTSSEEEEEEECC
T ss_pred eEEEEEEECCCCCEEEEEE-EEEEEEcCCCCEEEEEEEEe
Confidence 3323334578999988853 45567799999988777664
No 101
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=96.92 E-value=0.0069 Score=52.75 Aligned_cols=102 Identities=11% Similarity=0.104 Sum_probs=77.0
Q ss_pred cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcE
Q 003071 741 HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPI 820 (850)
Q Consensus 741 ~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf 820 (850)
++++.|+.++. |=.|+|.|.++.++++|+-+|+.+.+..--..|.+++.-.+.+.++.+.|-.....=--+.+.|+.+
T Consensus 7 ~~~~~i~~~d~--~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~ 84 (117)
T 3f1p_A 7 DSKTFLSEHSM--DMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYV 84 (117)
T ss_dssp GGGEEEEEECT--TCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEE
T ss_pred CCccEEEEECC--CceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEE
Confidence 45677777764 6789999999999999999999998877777788888888888888887765444322347889988
Q ss_pred EEeeeEEeEeecC-CCceEEEEEecc
Q 003071 821 SYERAVAWKVLNE-EENAHCICFMFI 845 (850)
Q Consensus 821 ~i~~a~vW~l~d~-~g~~~gqAa~F~ 845 (850)
+++- .+--+.|+ +|...+...++.
T Consensus 85 w~~~-~~~~~~d~~~g~~~~iv~~~~ 109 (117)
T 3f1p_A 85 WLET-QGTVIYNPRNLQPQCIMCVNY 109 (117)
T ss_dssp EEEE-EEEEEEETTTTEEEEEEEEEE
T ss_pred EEEE-eeEEEECCCCCCceEEEEEee
Confidence 8864 44456777 788777655543
No 102
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=96.85 E-value=0.0023 Score=56.29 Aligned_cols=106 Identities=13% Similarity=0.088 Sum_probs=67.6
Q ss_pred HHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccch-hHHhhhhHHHHHhccccCCCeeE
Q 003071 735 ILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGR-KTLCSEFPQIMQQGFMCLQSGIC 812 (850)
Q Consensus 735 ~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r-~er~~lL~~v~~qG~~~~y~GvR 812 (850)
.++.+++ +|.+|+. + .+=.+.|+|+++.+||+++-+++.+.+...-..+... ......+.++.++|-.....-..
T Consensus 4 ~~~~~~~~~~~~i~~-~--~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 80 (120)
T 3mqq_A 4 DYKTAFHLAPIGLVL-S--RDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIM 80 (120)
T ss_dssp CHHHHHHHCSSEEEE-E--ETTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEEE
T ss_pred hHHHHHhcCCceEEE-e--cCCEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEEE
Confidence 3567774 8999864 3 3778999999999999999999999987654433222 22223333434444322222334
Q ss_pred EccCCCcEEEeeeEEeEeecCCCceEEEEEecc
Q 003071 813 LSSMGRPISYERAVAWKVLNEEENAHCICFMFI 845 (850)
Q Consensus 813 iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~ 845 (850)
..+.|+.|+++- ....++.+|...|...+|.
T Consensus 81 ~~~dG~~~~~~~--~~~~~~~~~~~~~~v~~~~ 111 (120)
T 3mqq_A 81 KRAGGELFWCHV--TGRALDRTAPLAAGVWTFE 111 (120)
T ss_dssp ECTTSCEEEEEE--EEEESSTTSTTSSEEEEEE
T ss_pred EeCCCCEEEEEE--EEEECCCCCCceeEEEEEE
Confidence 578999998863 3455577765555555553
No 103
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=96.70 E-value=0.012 Score=52.68 Aligned_cols=104 Identities=9% Similarity=-0.054 Sum_probs=64.2
Q ss_pred Hhh-cCCCeEeecCCCC-CceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEcc
Q 003071 738 TLW-HHSDAVLCCSLKA-LPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSS 815 (850)
Q Consensus 738 ~l~-~ap~avl~h~~~~-dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss 815 (850)
.++ ++|++|+..+.+. |=.+.|.|+++.+||+|+-+|+++.+...-..+.........+.++.++|-...+.-....+
T Consensus 3 ~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k 82 (132)
T 2pr5_A 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKK 82 (132)
T ss_dssp ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECT
T ss_pred hHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEec
Confidence 445 4799998887653 55999999999999999999999987654433333233233444455554332222234678
Q ss_pred CCCcEEEeeeEEeEeecCCCceEEEEEec
Q 003071 816 MGRPISYERAVAWKVLNEEENAHCICFMF 844 (850)
Q Consensus 816 ~Grrf~i~~a~vW~l~d~~g~~~gqAa~F 844 (850)
.|+.|+++-.+. .+.|++ ..+...++
T Consensus 83 dG~~~~~~~~~~-~~~~~~--~~~~~~~~ 108 (132)
T 2pr5_A 83 DGTMFWNELNID-PMEIED--KTYFVGIQ 108 (132)
T ss_dssp TSCEEEEEEEEE-EEEETT--EEEEEEEE
T ss_pred CCCeeeeEEEEE-eccCCC--eeEEEEEE
Confidence 999998864332 344554 44444444
No 104
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=96.64 E-value=0.012 Score=52.59 Aligned_cols=89 Identities=13% Similarity=0.071 Sum_probs=64.4
Q ss_pred HHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCC----Ce
Q 003071 736 LKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQ----SG 810 (850)
Q Consensus 736 ~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y----~G 810 (850)
++.+++ +|++|+..+. +=.+.|.|.++.+||+|+-+|+++.+...-..+..+......+.+....|-.... .-
T Consensus 18 ~~~l~~~~~d~i~~~d~--~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 95 (130)
T 1d06_A 18 LRSILDTVPDATVVSAT--DGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMATGEKRIIGIDRVV 95 (130)
T ss_dssp HHHHHTTCSSEEEEEET--TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTSCEEE
T ss_pred HHHHHhhCcCeEEEECC--CCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHHHHhcCCccccCCeeEE
Confidence 456674 7999998764 5689999999999999999999999876655555555555566666665543211 11
Q ss_pred eEEccCCCcEEEeeeE
Q 003071 811 ICLSSMGRPISYERAV 826 (850)
Q Consensus 811 vRiss~Grrf~i~~a~ 826 (850)
..+.+.|+.|+++-.+
T Consensus 96 ~~~~kdG~~~~~~~~~ 111 (130)
T 1d06_A 96 SGQRKDGSTFPMKLAV 111 (130)
T ss_dssp EEECTTSCEEEEEEEE
T ss_pred EEEeCCCCEEEEEEEE
Confidence 3468999999987543
No 105
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=96.60 E-value=0.0063 Score=53.94 Aligned_cols=90 Identities=9% Similarity=0.043 Sum_probs=61.3
Q ss_pred hHHHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCee
Q 003071 733 ESILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGI 811 (850)
Q Consensus 733 ~~~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 811 (850)
+..++.+|+ +|++|+..+. +=.|.|.|+++.+||+|+-+|+.+.+...-.++..+......+..+...+. ..+.-.
T Consensus 10 e~~~~~l~e~~~d~i~~~d~--~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~ 86 (117)
T 2r78_A 10 SNAYRALFEHAIDGIFIMDA--EGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGEP-LREERT 86 (117)
T ss_dssp HHHHHHHHHHCSSEEEEECT--TSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTSHHHHHHHHHHTTCC-EEEEEE
T ss_pred HHHHHHHHhcCCceEEEECC--CCCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchhHHHHHHHHHHcCCc-EEEEEE
Confidence 456788885 8999988874 568999999999999999999999976543333222222234444443332 223344
Q ss_pred EEccCCCcEEEeee
Q 003071 812 CLSSMGRPISYERA 825 (850)
Q Consensus 812 Riss~Grrf~i~~a 825 (850)
.+.+.|+.|+++-.
T Consensus 87 ~~~kdG~~~~v~~~ 100 (117)
T 2r78_A 87 VWTRNGDQLTVELS 100 (117)
T ss_dssp EECTTSCEEEEEEE
T ss_pred EEecCCCEEEEEEE
Confidence 56899999888653
No 106
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=96.47 E-value=0.0069 Score=58.29 Aligned_cols=110 Identities=7% Similarity=0.001 Sum_probs=79.8
Q ss_pred hHHHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCee
Q 003071 733 ESILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGI 811 (850)
Q Consensus 733 ~~~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 811 (850)
++.++.+++ +|++|+..+. .|-.+.|+|.++.++|+++ ++.+.+..--..+..+......+.++.+.|-...+..+
T Consensus 36 ~~~l~~l~~~~~~~i~~~d~-~~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 112 (185)
T 3kx0_X 36 AEDVRRIFEHIPAILVGLEG-PDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSEW 112 (185)
T ss_dssp HHHHHHHHHHCSSEEEEEET-TTTEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHHHhcCCceEEEEEC-CCcEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCcccccce
Confidence 456777885 8999988762 4779999999999999999 89998877666665555566778888888866554445
Q ss_pred EEccC-----CCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 812 CLSSM-----GRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 812 Riss~-----Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
++... |+..+++ ..+-.+.|++|...|...++.+
T Consensus 113 ~~~~~~~~~gg~~~~~~-~~~~pi~~~~g~~~g~~~~~~D 151 (185)
T 3kx0_X 113 RLQTDYDGSGVEERYFD-FVVTPRRRADGSIEGVQLIVDD 151 (185)
T ss_dssp EEC--------CCEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred eEEeeccCCCCccEEEE-EEEEEEECCCCCEEEEEEEEEe
Confidence 55221 5666653 4555678999999998877754
No 107
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=96.47 E-value=0.0061 Score=55.93 Aligned_cols=110 Identities=7% Similarity=-0.008 Sum_probs=77.7
Q ss_pred hHHHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCee
Q 003071 733 ESILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGI 811 (850)
Q Consensus 733 ~~~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 811 (850)
++.++.+++ +|.+|+..+ .+|-.+.|.|.++.++|+++ ++.+.+..--..+..+......+.++.+.|-...+...
T Consensus 16 ~~~~~~~~~~~~~~i~~~d-~~~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 92 (158)
T 3k3c_A 16 AEDVRRIFEHIPAILVGLE-GPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGSEW 92 (158)
T ss_dssp HHHHHHHHHHCSSEEEEEE-TTTTEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEEEEEE
T ss_pred HHHHHHHHhcCCceEEEEE-CCCcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCcccccce
Confidence 455677774 899988876 24678999999999999999 88888876656565555566778888877765443334
Q ss_pred EE--ccC---CCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 812 CL--SSM---GRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 812 Ri--ss~---Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
++ ... |+..++ ...+--+.|++|...|...++.+
T Consensus 93 ~~~~~~~~~~g~~~~~-~~~~~pi~~~~g~~~g~~~~~~D 131 (158)
T 3k3c_A 93 RLQTDYDGSGVEERYF-DFVVTPRRRADGSIEGVQLIVDD 131 (158)
T ss_dssp EEEEESSSSCEEEEEE-EEEEEEEECTTSCEEEEEEEEEE
T ss_pred eEEeccCCCCcceEEE-EEEEEEeECCCCCEEEEEEEEEe
Confidence 33 322 444444 33455677999999998877754
No 108
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=96.45 E-value=0.027 Score=48.79 Aligned_cols=105 Identities=6% Similarity=-0.009 Sum_probs=74.5
Q ss_pred cCCCeEeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCc
Q 003071 741 HHSDAVLCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRP 819 (850)
Q Consensus 741 ~ap~avl~h~~~-~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grr 819 (850)
..|.+|+..+.. ++-.+.|+|.++.++|+++-+++.+.+...-..+..+......+.++...|-.....-....+.|+.
T Consensus 10 ~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 89 (146)
T 2v0u_A 10 RIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKK 89 (146)
T ss_dssp GSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCCE
T ss_pred cCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEEEEEecCCcE
Confidence 367888777652 2568999999999999999999999987766555555554555556666554433333455678887
Q ss_pred EEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 820 ISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 820 f~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
+++. ..+-.+.|++|...|...++.+
T Consensus 90 ~~~~-~~~~~~~~~~g~~~~~~~~~~D 115 (146)
T 2v0u_A 90 FWNL-FHLQPMRDQKGDVQYFIGVQLD 115 (146)
T ss_dssp EEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEE-EEEEEeECCCCCEEEEEEEEee
Confidence 7774 4555677899998887776644
No 109
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=96.40 E-value=0.025 Score=48.57 Aligned_cols=105 Identities=8% Similarity=-0.023 Sum_probs=69.3
Q ss_pred cCCCeEeecCCCC-CceeEcccHHHHHhhccCHHHhhcCc--cccccCccchhHHhhhhHHHHHhccccCCCeeEEccCC
Q 003071 741 HHSDAVLCCSLKA-LPVFTFANQAGLDMLETTLVALQDIT--LEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMG 817 (850)
Q Consensus 741 ~ap~avl~h~~~~-dP~f~yaN~aaL~l~e~~w~~l~~lp--sr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~G 817 (850)
+.|.+|+..+... +=.+.|+|+++.++|+++-+++.+.+ ...-..+.........+.++...|-.....=....+.|
T Consensus 27 ~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 106 (138)
T 2l0w_A 27 GQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVEIAFYRKDG 106 (138)
T ss_dssp TTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEEEEEECTTS
T ss_pred cCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeEEEEECCCC
Confidence 3789888877632 56899999999999999999999988 55544444433333344444444432222222346788
Q ss_pred CcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 818 RPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 818 rrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
+.++++- .+-.+.|++|...|...+|.+
T Consensus 107 ~~~~~~~-~~~~~~~~~g~~~~~~~~~~D 134 (138)
T 2l0w_A 107 SCFLCLV-DVVPVKNEDGAVIMFILNFEV 134 (138)
T ss_dssp CEEEEEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred CEEEEEE-EEEEEeCCCCCEEEEEEEEEe
Confidence 8877753 444567888988887766644
No 110
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=96.39 E-value=0.13 Score=52.36 Aligned_cols=149 Identities=15% Similarity=0.182 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCCh
Q 003071 401 AALRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPP 480 (850)
Q Consensus 401 ~sl~kLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp 480 (850)
+.+.++|+..+..|-.-+.. ..+|.... ..++|+|..+...+ .++-++ ++...+ ++||
T Consensus 22 ~~y~~~a~~~~~~~l~~~~~--~~~W~~~~--~~~gv~v~~~~~~~---------------~~~~~~--k~~~~v-~~~~ 79 (231)
T 2r55_A 22 SMAAQMSEAVAEKMLQYRRD--TAGWKICR--EGNGVSVSWRPSVE---------------FPGNLY--RGEGIV-YGTL 79 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--CSSCEEEE--CCSSEEEEEEECSS---------------SSSEEE--EEEEEE-SSCH
T ss_pred HHHHHHHHHHHHHHHHHhcC--CCCCEEEE--eCCCEEEEEEccCC---------------CCCcEE--EEEEEE-CCCH
Confidence 47999999999988886643 47898775 35678998876531 013333 455556 8999
Q ss_pred HHHHHHH--hh--hchhhcccccchhhHhhhhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEeeccccccccCC
Q 003071 481 AILLRFL--RE--HRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMI 556 (850)
Q Consensus 481 ~~lf~FL--Rd--~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~ 556 (850)
+.||++| .| .|.+||... . + ...+..|. .. ..|.+... .+.-..-+
T Consensus 80 ~~v~~~l~~~d~~~r~~Wd~~~----~-----~--------------~~vle~i~----~~--~~i~~~~~-~~~~~~~v 129 (231)
T 2r55_A 80 EEVWDCVKPAVGGLRVKWDENV----T-----G--------------FEIIQSIT----DT--LCVSRTST-PSAAMKLI 129 (231)
T ss_dssp HHHHHHHCC--CCSHHHHCTTC----S-----E--------------EEEEEECS----SS--EEEEEEEC-CCBTTTTB
T ss_pred HHHHHHHHhhCcchhhhhcccc----c-----e--------------eEEEEEcC----CC--EEEEEEEe-ccccCCcc
Confidence 9999999 76 899999742 1 1 23444442 11 22333211 01001125
Q ss_pred CCCceEEEeeccCCCCCCCCceeE-EEEeeccCCC----CCC--CCccCCccEEecC
Q 003071 557 MPSDIFLLQLCSGVDENAVGNCAE-LVFAPIDASF----SDD--APIIPSGFRIIPL 606 (850)
Q Consensus 557 ~~~~~liLQe~~~~De~~~G~~s~-vVyAPvD~~d----s~~--v~LLPSGF~IlP~ 606 (850)
.+||..+|.-+ ..++ .| ++ ++.-.||-+. +.+ +.++|+||.|-|+
T Consensus 130 ~~RDfv~~r~~-~~~~--~g--~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~ 181 (231)
T 2r55_A 130 SPRDFVDLVLV-KRYE--DG--TISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPL 181 (231)
T ss_dssp CCEEEEEEEEE-EECT--TS--CEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEEC
T ss_pred CCCeEEEEEEE-EEcC--CC--EEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEe
Confidence 56788888765 3443 25 34 4566777542 233 3478999999994
No 111
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=96.34 E-value=0.012 Score=51.70 Aligned_cols=105 Identities=10% Similarity=0.075 Sum_probs=71.8
Q ss_pred HHhh-cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHH-hccccCCCeeE-E
Q 003071 737 KTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQ-QGFMCLQSGIC-L 813 (850)
Q Consensus 737 ~~l~-~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~-qG~~~~y~GvR-i 813 (850)
+.|. ++|+.|+.++. |=.|+|.|.++.++++|+-+|+.+.+..--..|.+++.-...+.++.+ .|-...+ =.| .
T Consensus 5 ~ll~e~~~d~i~~~d~--~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~-e~r~~ 81 (121)
T 3f1p_B 5 GLNVCQPTRFISRHNI--EGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSV-MFRFR 81 (121)
T ss_dssp ---CCCCCEEEEEECT--TSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEE-EEEEE
T ss_pred cceecCCCceEEEECC--CceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccE-EEEEE
Confidence 3444 47888888764 668999999999999999999999987666667777666666666653 3322221 123 4
Q ss_pred ccCCCcEEEeeeEEeEeecC-CCceEEEEEecc
Q 003071 814 SSMGRPISYERAVAWKVLNE-EENAHCICFMFI 845 (850)
Q Consensus 814 ss~Grrf~i~~a~vW~l~d~-~g~~~gqAa~F~ 845 (850)
.+.|+.++++- .+--+.|+ +|...+...++.
T Consensus 82 ~~dG~~~w~~~-~~~~~~~~~~g~~~~iv~~~~ 113 (121)
T 3f1p_B 82 SKNQEWLWMRT-SSFTFQNPYSDEIEYIICTNT 113 (121)
T ss_dssp CTTSCEEEEEE-EEEEECCTTCCCCCEEEEEEE
T ss_pred ecCCCEEEEEE-EEEEEECCCCCceeEEEEEeE
Confidence 78899888863 34445676 677777655543
No 112
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=96.27 E-value=0.022 Score=59.83 Aligned_cols=105 Identities=6% Similarity=-0.008 Sum_probs=78.7
Q ss_pred cCCCeEeecCCC-CCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCc
Q 003071 741 HHSDAVLCCSLK-ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRP 819 (850)
Q Consensus 741 ~ap~avl~h~~~-~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grr 819 (850)
+.|++|+..+.. +|=.++|+|+++.+|++|+-+|+.+.+...-..+..+.+....+.++.+.|-.....-....+.|+.
T Consensus 19 ~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~ 98 (332)
T 2wkq_A 19 RIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGKK 98 (332)
T ss_dssp GCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTCCE
T ss_pred cCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEEcCCCCE
Confidence 578998887652 3678999999999999999999999988765555555555555566666654333333456789999
Q ss_pred EEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 820 ISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 820 f~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
++++ ..+-.+.|++|...|...++.+
T Consensus 99 ~~~~-~~~~pi~d~~g~~~~~v~~~~D 124 (332)
T 2wkq_A 99 FWNL-FHLQPMRDQKGDVQYFIGVQLD 124 (332)
T ss_dssp EEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEe-eEEEEeEcCCCCEEEEEEEecc
Confidence 9885 4666788999999998887754
No 113
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=96.12 E-value=0.047 Score=46.49 Aligned_cols=83 Identities=22% Similarity=0.151 Sum_probs=58.0
Q ss_pred HHHhh-cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEc
Q 003071 736 LKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLS 814 (850)
Q Consensus 736 ~~~l~-~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRis 814 (850)
++.++ ++|++|+..+. +=.+.|.|.++.++|+|+-+++.+++...-.++..... +..+.+.+. ..+.-....
T Consensus 15 ~~~~~~~~~~~i~~~d~--~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~----~~~~~~~~~-~~~e~~~~~ 87 (118)
T 3olo_A 15 AHYLINNAVEASFCLGD--NWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD----WEEIRQKNN-YTFKTRYRS 87 (118)
T ss_dssp HHHHHHHCSSEEEEECT--TSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC----HHHHHHHSE-EEEEEEEEC
T ss_pred HHHHHhcCCceEEEECC--CCcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH----HHHHHhcCc-EEEEEEEEc
Confidence 45566 48999998874 56899999999999999999999998765443322222 444444443 334445567
Q ss_pred cCCCcEEEeee
Q 003071 815 SMGRPISYERA 825 (850)
Q Consensus 815 s~Grrf~i~~a 825 (850)
+.|+.++++-.
T Consensus 88 ~~g~~~~~~~~ 98 (118)
T 3olo_A 88 QSGRIFLVEMS 98 (118)
T ss_dssp TTCCEEEEEEE
T ss_pred cCCCEEEEEEE
Confidence 89998888643
No 114
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=95.93 E-value=0.043 Score=48.01 Aligned_cols=83 Identities=8% Similarity=0.059 Sum_probs=60.0
Q ss_pred CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCC-Ce---eEEccCC
Q 003071 742 HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQ-SG---ICLSSMG 817 (850)
Q Consensus 742 ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y-~G---vRiss~G 817 (850)
+|++|+..+ ++=.+.|.|.++.+||+|+-+|+++.+...-..+..+......+......|-.... .+ ....+.|
T Consensus 2 ~~d~i~~~d--~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG 79 (119)
T 2vv6_A 2 IPDAMIVID--GHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRDG 79 (119)
T ss_dssp CCCEEEEEE--TTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTTS
T ss_pred CcceEEEEC--CCCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeCCC
Confidence 577888776 45689999999999999999999999876655555555555566666666543211 11 2367999
Q ss_pred CcEEEeeeE
Q 003071 818 RPISYERAV 826 (850)
Q Consensus 818 rrf~i~~a~ 826 (850)
+.|+++-.+
T Consensus 80 ~~~~~~~~~ 88 (119)
T 2vv6_A 80 TTFPMHLSI 88 (119)
T ss_dssp CEEEEEEEE
T ss_pred CEEEEEEEE
Confidence 999987544
No 115
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=95.92 E-value=0.071 Score=52.94 Aligned_cols=103 Identities=10% Similarity=-0.033 Sum_probs=72.7
Q ss_pred cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCC--
Q 003071 741 HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGR-- 818 (850)
Q Consensus 741 ~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Gr-- 818 (850)
+++.+|+..+ .+-.++|.|.++.++++|+-+|+.+.+.+.-..+....+-...+.++.+.|-.....=....+.|+
T Consensus 119 ~~~~~i~~~d--~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~G~~~ 196 (227)
T 3ewk_A 119 ANSEMILLTD--RAGRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLLNRRRTGPAP 196 (227)
T ss_dssp TCCSEEEEEC--TTSCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEECCSSS
T ss_pred cCcCeEEEEc--CCCcEEEEchHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCCCCcC
Confidence 5788887765 577899999999999999999999988766555544444445555555555433333345567776
Q ss_pred ----cEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 819 ----PISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 819 ----rf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
.|+++- .+=-+.|++|...|-..++.+
T Consensus 197 ~dg~~~~~~~-~~~pi~d~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 197 HDAEDYWAEI-STTPIHTDGNGLVGYVQIQHD 227 (227)
T ss_dssp SCEEEEEEEE-EEEEEECSSSCEEEEEEEEEC
T ss_pred cccceEEEEE-EEEEEECCCCCEEEEEEEecC
Confidence 677644 455678999999888777643
No 116
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.88 E-value=0.028 Score=48.51 Aligned_cols=105 Identities=13% Similarity=0.136 Sum_probs=67.0
Q ss_pred HHHHhh-cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEE
Q 003071 735 ILKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICL 813 (850)
Q Consensus 735 ~~~~l~-~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRi 813 (850)
+...++ +.|.+|+..+. +=.+.|.|++|.++|+++.+++.+.+...-..+... ....+.++.+.|-.....-+++
T Consensus 8 l~~~il~~~~~~i~~~D~--~g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 83 (115)
T 3b33_A 8 LPSAILNNMVTATLILDD--GLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVTF 83 (115)
T ss_dssp HHHHHHHHCSSEEEEECT--TCBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEEE
T ss_pred cHHHHHhhcCceEEEECC--CCcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceEE
Confidence 445566 47999998876 448999999999999999999999876544333221 2334556666553211112333
Q ss_pred ccCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 814 SSMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 814 ss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
.+.|+.+.++ ..+-.+.| +|. .|.-++|.+
T Consensus 84 ~~~g~~~~~~-~~~~pi~~-~g~-~~~l~~~~D 113 (115)
T 3b33_A 84 VVDGRPLMLE-VTVSPITW-QRQ-LMLLVEMRK 113 (115)
T ss_dssp EETTEEEEEE-EEEEEEEE-TTE-EEEEEEEEE
T ss_pred ecCCCEEEEE-EEEEEeec-CCc-eEEEEEEEe
Confidence 3578776653 45556677 776 566666643
No 117
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=95.80 E-value=0.033 Score=53.75 Aligned_cols=108 Identities=13% Similarity=0.079 Sum_probs=76.3
Q ss_pred HHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhcccc-------
Q 003071 735 ILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMC------- 806 (850)
Q Consensus 735 ~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~------- 806 (850)
.++.+++ .|++|+.-+. |=.++|.|+++.++++++-+++++-+..--.++ .++.-.+.+.+|.+.|--.
T Consensus 23 ~l~~il~~~~~gi~v~D~--~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~~~~~~~ 99 (152)
T 3mxq_A 23 LLSELLDQLSFALCIVRN--DYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFSSWEQK 99 (152)
T ss_dssp HHHHHHHHHCCEEEEEET--TSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEEEECCSS
T ss_pred HHHHHHhcCCCCEEEEcC--CCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCceeeecccc
Confidence 4455664 6899888764 778999999999999999999999887766655 5555566678888876321
Q ss_pred -----CCCeeEEccCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 807 -----LQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 807 -----~y~GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
...+-.+++.|+. .+.+.+++-|.|++|.+.|.++++.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~-~~~~~ti~Pl~d~~G~v~gv~~ii~D 143 (152)
T 3mxq_A 100 PHLLPFKSSRPVSGEEEQ-MYQNLEVIPIHSEDGTIEHVCLCVYD 143 (152)
T ss_dssp SCSSCC----------CC-EEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred cccccccccCCCCCCCcE-EEEEEEEEEEECCCCCEEEEEEEEEE
Confidence 1112234555654 45588999999999999999988755
No 118
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=95.78 E-value=0.031 Score=48.11 Aligned_cols=102 Identities=13% Similarity=0.051 Sum_probs=71.1
Q ss_pred Hhh-cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccC
Q 003071 738 TLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSM 816 (850)
Q Consensus 738 ~l~-~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~ 816 (850)
.++ ..|++|+..+. +=.++|+|.++.++|+++-+++.+.+..--..+..+......+.++...+.. .+.-....+.
T Consensus 3 ~l~~~~~~~i~~~d~--~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 79 (126)
T 3mjq_A 3 NFLETIEDMILIINR--EGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEKKE 79 (126)
T ss_dssp TTGGGCSSEEEEEET--TSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEECTT
T ss_pred hHHhhCCceEEEEeC--CCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEccC
Confidence 345 47899988875 5689999999999999999999999877666777777777778888776654 2232334678
Q ss_pred CCcEEEeeeEEeEeecCCCceEEEEEecc
Q 003071 817 GRPISYERAVAWKVLNEEENAHCICFMFI 845 (850)
Q Consensus 817 Grrf~i~~a~vW~l~d~~g~~~gqAa~F~ 845 (850)
|+.++++- .+..+.+ ++ ..|...++.
T Consensus 80 g~~~~~~~-~~~~~~~-~~-~~~~~~~~~ 105 (126)
T 3mjq_A 80 GTSIPAKA-RIWQGKW-HN-EPCLFAIIK 105 (126)
T ss_dssp SCEEEEEE-EEEEEES-SS-SEEEEEEEE
T ss_pred CCEEEEEE-EEEeeeE-CC-ceEEEEEEE
Confidence 88887753 3333333 22 344444443
No 119
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=95.73 E-value=0.037 Score=54.98 Aligned_cols=93 Identities=6% Similarity=-0.069 Sum_probs=67.5
Q ss_pred CCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcEEEeeeEEeEeec
Q 003071 753 ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISYERAVAWKVLN 832 (850)
Q Consensus 753 ~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i~~a~vW~l~d 832 (850)
.+=.++|+|.++.+||+|+.+|+.+.+.+.-..+...++....+.+....|-...+.-....+.|+.|+++- .+=-+.|
T Consensus 7 ~~g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~-~~~p~~d 85 (227)
T 3ewk_A 7 LQGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDS-TIVPLMD 85 (227)
T ss_dssp TTCBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEE-EEEEEEC
T ss_pred CCCcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeee-EEEEEEc
Confidence 456899999999999999999999998776554444444444444555566554444556789999999854 4556779
Q ss_pred CCCceEEEEEeccc
Q 003071 833 EEENAHCICFMFIN 846 (850)
Q Consensus 833 ~~g~~~gqAa~F~~ 846 (850)
++|...|..+++.+
T Consensus 86 ~~g~~~~~~~~~~D 99 (227)
T 3ewk_A 86 NAGKPRQYISIRRD 99 (227)
T ss_dssp SSSCEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEe
Confidence 99998887666543
No 120
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=95.72 E-value=0.065 Score=45.08 Aligned_cols=109 Identities=9% Similarity=-0.007 Sum_probs=70.8
Q ss_pred HHHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCcc--ccccCccchhHHhhhhHHHHHhccccCCCe
Q 003071 734 SILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITL--EKIFDDSGRKTLCSEFPQIMQQGFMCLQSG 810 (850)
Q Consensus 734 ~~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lps--r~sae~~~r~er~~lL~~v~~qG~~~~y~G 810 (850)
..++.+++ +|.+|+..+.+. =.+.|.|.++.++|+++-+++.+.+. .....+.++..-...+.++. .|-... .-
T Consensus 11 ~~~~~~~~~~~~~i~~~d~~~-~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~e 87 (125)
T 3eeh_A 11 RRVRELTEATNDILWEFTADL-SEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQSLM-DGESAD-VE 87 (125)
T ss_dssp HHHHHHHSCCCCEEEEEETTS-SCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHHHH-TTCCEE-EE
T ss_pred HHHHHHHhcCCceEEEEEcCC-CcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHHHH-cCCCcc-EE
Confidence 45566664 788888877642 37899999999999999999998873 33334555544444555533 332221 12
Q ss_pred eEE-ccCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 811 ICL-SSMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 811 vRi-ss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
+|+ .+.|+.++++- .+-.+.|++|...+...++.+
T Consensus 88 ~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~~~~~~~D 123 (125)
T 3eeh_A 88 CRVNATEEYQRWVWI-QGEPITNDAGETVRVAGFARD 123 (125)
T ss_dssp EEECGGGTTCEEEEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEcCCCCEEEEEE-ecEEEECCCCCEEEEEEEEEe
Confidence 333 45687777653 455577889988887766643
No 121
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=95.47 E-value=0.063 Score=46.56 Aligned_cols=97 Identities=11% Similarity=0.130 Sum_probs=65.1
Q ss_pred cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhc-cccCCCeeEEccCCCc
Q 003071 741 HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQG-FMCLQSGICLSSMGRP 819 (850)
Q Consensus 741 ~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG-~~~~y~GvRiss~Grr 819 (850)
++|++|+.++. +=.+.|.|.++.++|+|+-+|+.+.+..--..|.+++.....+.++.+.+ -...+.---+.+.|+.
T Consensus 11 ~~~~~i~~~d~--~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~ 88 (121)
T 2kdk_A 11 KPTEFITRFAV--NGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRAKDGSF 88 (121)
T ss_dssp CSSEEEEEECT--TSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEECSSSCE
T ss_pred CCccEEEEECC--CeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEcCCCE
Confidence 57888888875 56899999999999999999999987654445666666566666666543 2111111124789999
Q ss_pred EEEeeeEEeEeecCCC-ceEEE
Q 003071 820 ISYERAVAWKVLNEEE-NAHCI 840 (850)
Q Consensus 820 f~i~~a~vW~l~d~~g-~~~gq 840 (850)
++++- .+-.+.|++| ...+.
T Consensus 89 ~~~~~-~~~~~~d~~~~~~~~~ 109 (121)
T 2kdk_A 89 VTLKS-QWFSFTNPDTKELEYI 109 (121)
T ss_dssp EEEEE-EEEEEECCSSSCEEEE
T ss_pred EEEEE-EEEEEECCCCCeeeEE
Confidence 88864 3334567654 44433
No 122
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=95.45 E-value=0.036 Score=47.91 Aligned_cols=104 Identities=11% Similarity=0.060 Sum_probs=61.3
Q ss_pred HHHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeE
Q 003071 734 SILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC 812 (850)
Q Consensus 734 ~~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 812 (850)
..++.+++ .|++|+..+. +-.+.|.|.++.++|+++-+++.+.+..--.++...+.......++...|-.. ..
T Consensus 19 ~~~~~i~~~~~~~i~~~d~--~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 92 (125)
T 3fc7_A 19 KKFESLVSDSPDGIVHLTT--NGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT----RS 92 (125)
T ss_dssp -------CCSCCEEEEEET--TSBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE----EE
T ss_pred HHHHHHHhcCCCeEEEEcC--CCeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE----Ee
Confidence 44566775 7999998875 56999999999999999999999999877664444444444446666666322 22
Q ss_pred EccCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 813 LSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 813 iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
....| ..+++ ..+-.+. ++|...|...+|.+
T Consensus 93 ~~~~~-~~~~~-~~~~p~~-~~~~~~~~~~~~~D 123 (125)
T 3fc7_A 93 EDAVG-GRHYH-NQYIPVD-SHRKSDTFQLVSRD 123 (125)
T ss_dssp EEEET-TEEEE-EEEEESS-TTTTTTEEEEEEEE
T ss_pred EcCCC-cEEEE-EEEEeEe-cCCCeEEEEEEEec
Confidence 22331 33333 2222343 44555666555543
No 123
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=95.33 E-value=0.038 Score=47.12 Aligned_cols=109 Identities=9% Similarity=-0.081 Sum_probs=70.4
Q ss_pred HHHHhh-cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcC--ccccccCccchhHHhhhhHHHHHhccccCCCee
Q 003071 735 ILKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDI--TLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGI 811 (850)
Q Consensus 735 ~~~~l~-~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~l--psr~sae~~~r~er~~lL~~v~~qG~~~~y~Gv 811 (850)
.++.+. .+|.+|...+. +-.++|.|.++.++|+++-+++.+. .......|.+++.-...+.++.+.|-.....--
T Consensus 8 ~l~~~~~~~~~~i~~~d~--~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e~~ 85 (125)
T 3nja_A 8 LLHTAESDAGIGSWVLHM--ESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDVEYR 85 (125)
T ss_dssp ---------CCEEEEEET--TTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCEEEEEE
T ss_pred HHHHHHHhCCeeEEEEEc--CCCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCceEEEE
Confidence 344555 47888877765 4568899999999999999998872 222234566777777778888877754332222
Q ss_pred EEccCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 812 CLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 812 Riss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
-..+.|+.++++-... -+.|++|...|...++.+
T Consensus 86 ~~~~~g~~~~~~~~~~-~~~~~~g~~~~~~g~~~D 119 (125)
T 3nja_A 86 IVRPDGQVRELLERNH-IQRQASGQVDHLWGTVID 119 (125)
T ss_dssp EECTTSCEEEEEEEEE-EEECTTSCEEEEEEEEEE
T ss_pred EECCCCCEEEEEEeeE-EEECCCCCEEEEEEEEEe
Confidence 2367788887765433 567889998887766644
No 124
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=95.12 E-value=0.08 Score=49.03 Aligned_cols=88 Identities=14% Similarity=0.173 Sum_probs=58.7
Q ss_pred HHHHhh-cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccc------cC
Q 003071 735 ILKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFM------CL 807 (850)
Q Consensus 735 ~~~~l~-~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~------~~ 807 (850)
..+.++ ..+++|+.-+. +=.++|+|.||.+||+++-+++++.+...-..+..++.-..++.+..+.|-. ..
T Consensus 8 ~l~~i~~~~~d~i~~~D~--~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (129)
T 3mfx_A 8 TIELFIQHLTEAMILVNA--NGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQHP 85 (129)
T ss_dssp HHHHHHTTCSSEEEEEET--TSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSCEE
T ss_pred HHHHHHhcCCceEEEECC--CCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccCCC
Confidence 345566 47999998875 5699999999999999999999999977666666655545555554332211 00
Q ss_pred -CCeeEEccCCCcEEEee
Q 003071 808 -QSGICLSSMGRPISYER 824 (850)
Q Consensus 808 -y~GvRiss~Grrf~i~~ 824 (850)
..-....+.|+.|+++-
T Consensus 86 ~~E~~~~rkdG~~~~vel 103 (129)
T 3mfx_A 86 AQETTLICASGKAKDVEL 103 (129)
T ss_dssp EEEEEEECTTSCEEEEEE
T ss_pred ceEEEEEcCCCCEEEEEE
Confidence 11123467899999964
No 125
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=94.97 E-value=0.059 Score=45.84 Aligned_cols=110 Identities=9% Similarity=0.002 Sum_probs=75.1
Q ss_pred hHHHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccc--cccCccchhHHhhhhHHHHHhccccCCC
Q 003071 733 ESILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLE--KIFDDSGRKTLCSEFPQIMQQGFMCLQS 809 (850)
Q Consensus 733 ~~~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr--~sae~~~r~er~~lL~~v~~qG~~~~y~ 809 (850)
++.++.+.+ +|.+|...+. +-.++|.|.++.++|+++-+++.+.+.. .-..|.+++.-.+.+.++.+.|-.....
T Consensus 3 ~~~~~~l~~~~~~~i~~~d~--~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~e 80 (118)
T 3icy_A 3 AEELQALVDNIPAAIYHLDV--SGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTLV 80 (118)
T ss_dssp HHHHHHHHTTCCCCCEEECT--TSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHHHhcCCceEEEEEc--CCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceEE
Confidence 455677775 7888876654 6678899999999999999998776542 2345667776677777777766533332
Q ss_pred eeEEccCCCcEEEeeeEEeEeecCCCceEEEEEecc
Q 003071 810 GICLSSMGRPISYERAVAWKVLNEEENAHCICFMFI 845 (850)
Q Consensus 810 GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~ 845 (850)
---+.+.|+..+++. ..=-+.|++|...+...++.
T Consensus 81 ~r~~~~~g~~~w~~~-~~~~~~~~~g~~~~~~g~~~ 115 (118)
T 3icy_A 81 YRIVTPEGKLHWIED-HMRSSFSDDGLFSGIDGILC 115 (118)
T ss_dssp EEEECTTCCEEEEEE-EEEEEECTTSCEEEEEEEEE
T ss_pred EEEECCCCCEEEEEE-EEEEEECCCCCEEEEEEEEE
Confidence 222367888777754 33356789998876655543
No 126
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=94.52 E-value=0.12 Score=45.03 Aligned_cols=85 Identities=14% Similarity=0.026 Sum_probs=50.9
Q ss_pred HHHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhh--cCccccccCccchhHHhhhhHHHHHhccccCCCe
Q 003071 734 SILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQ--DITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSG 810 (850)
Q Consensus 734 ~~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~--~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~G 810 (850)
..++.+++ +|++|+..+. |=.+.|.|+++.++|+|+-+|+. +.+..--.. ++......+.++...+ ...+..
T Consensus 17 ~~~~~l~e~~~~~i~~~d~--~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~e~ 91 (126)
T 3bwl_A 17 SRLEALFENSPDMIDVLDA--DGTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQLSGFSVDE-RRKFEG 91 (126)
T ss_dssp HHHHHHHHHCSSEEEEECT--TCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHHHTCCTTC-EEEEEE
T ss_pred HHHHHHHhhCCcEEEEEcC--CCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHHHHHhcCC-CcceEE
Confidence 34567774 8999988764 56899999999999999999994 443221111 2222111111111111 111223
Q ss_pred eEEccCCCcEEEe
Q 003071 811 ICLSSMGRPISYE 823 (850)
Q Consensus 811 vRiss~Grrf~i~ 823 (850)
....+.|+.|+++
T Consensus 92 ~~~~~dG~~~~~~ 104 (126)
T 3bwl_A 92 LYERRDGSTMSVE 104 (126)
T ss_dssp EEECTTSCEEEEE
T ss_pred EEEeCCCCEEEEE
Confidence 3458899999886
No 127
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=94.48 E-value=0.79 Score=47.28 Aligned_cols=174 Identities=24% Similarity=0.305 Sum_probs=96.2
Q ss_pred CCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHH-HHHHhhhchhhcccccc
Q 003071 422 TDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAIL-LRFLREHRSEWADSSID 500 (850)
Q Consensus 422 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~l-f~FLRd~R~eWd~l~~~ 500 (850)
...+|..... .++|+|..++.. ++ +.+-.-++..-+ +.+|+.+ +++|.| |.+||...
T Consensus 48 ~~~gW~~~~~--~~gi~V~~k~~~---~~-------------~~~~~~K~~~~v-~~~~~~v~~~ll~d-r~~Wd~~~-- 105 (237)
T 2pso_A 48 KFKGWVTCSS--TDNTDLAFKKVG---DG-------------NPLKLWKASVEV-EAPPSVVLNRVLRE-RHLWDEDF-- 105 (237)
T ss_dssp HCCSCEEECC--SSSCEEEEECCC---SS-------------CCCCEEEEEEEE-SSCHHHHHHHHHHC-GGGTCTTB--
T ss_pred CCCCCEEEec--CCCeEEEEEEcC---CC-------------CCcEEEEEEEEE-cCChHHHHHHHHhh-hhhHHhhh--
Confidence 4567987753 578999988753 11 112233556667 5666655 578888 99999742
Q ss_pred hhhHhhhhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEeeccccccccCCCCCceEEEeeccCCCCCCCCceeE
Q 003071 501 AYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSDIFLLQLCSGVDENAVGNCAE 580 (850)
Q Consensus 501 ~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~~liLQe~~~~De~~~G~~s~ 580 (850)
.+ .+++-.|. ..+.|--....... .+.+||..++.-. ..|. ..|+ -.
T Consensus 106 -------~~--------------~~vle~id----~~~~I~y~~~~~p~-----p~~~RDfv~~r~~-r~~~-~~g~-~v 152 (237)
T 2pso_A 106 -------VQ--------------WKVVETLD----RQTEIYQYVLNSMA-----PHPSRDFVVLRTW-KTDL-PKGM-CT 152 (237)
T ss_dssp -------CC--------------CEEEEEEE----TTEEEEEEEECCSS-----SCCCEEEEEEEEE-ESCC-GGGC-EE
T ss_pred -------ce--------------EEEEEEcC----CCcEEEEEEecCCC-----CcCCeEEEEEEEE-EEEC-CCCE-EE
Confidence 11 34444442 22223222222221 2456788777763 2331 1353 23
Q ss_pred EEEeeccCCC-C--CC--CCccCCccEEecCCCCCCCCCCCcccccccccccCCCCCCCCCCCCCCCCCCcceEEEeehh
Q 003071 581 LVFAPIDASF-S--DD--APIIPSGFRIIPLDSGKDTPSPNRTLDLASALEVGPTGNKASGDSSTQCGSTKSVITIAFQF 655 (850)
Q Consensus 581 vVyAPvD~~d-s--~~--v~LLPSGF~IlP~~~~~dg~~~~~~ldlas~l~~g~~~~~~~g~~~~~~~~~gslLTvaFQ~ 655 (850)
++...|+-++ | .+ +..+|+||.|-|++ +++|.+|.-+|+
T Consensus 153 i~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~------------------------------------~~~t~vt~~~~~ 196 (237)
T 2pso_A 153 LVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCG------------------------------------SGKSRLTHICRI 196 (237)
T ss_dssp EEEEECCCTTCCCCSSEECCEEEEEEEEEECS------------------------------------TTCEEEEEEEEE
T ss_pred EEEEcccCCCCCCCCcEEEEEeccEEEEEECC------------------------------------CCCEEEEEEEEe
Confidence 3344555431 1 22 45778888888830 135777777776
Q ss_pred hccccchhhHHhhhhhhhhHHHHHHHHHHHHcCC
Q 003071 656 AFEMHLQENVASMARQYVRGIIASVQRVALALSP 689 (850)
Q Consensus 656 l~~~~~~~sva~~~~~~v~~v~~tvqri~~AL~~ 689 (850)
=........+ ++-+......++.+++.++..
T Consensus 197 Dp~G~iP~~l---n~~~~~~~~~~l~~LR~~~~~ 227 (237)
T 2pso_A 197 DLKGHSPEWY---SKGFGHLCAAEVARIRNSFQP 227 (237)
T ss_dssp CCSSSCTTTT---TTHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCchHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 5554333322 334455566799999999853
No 128
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=94.32 E-value=0.24 Score=44.60 Aligned_cols=99 Identities=12% Similarity=-0.019 Sum_probs=64.9
Q ss_pred HHHHhh-cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhcccc----CCC
Q 003071 735 ILKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMC----LQS 809 (850)
Q Consensus 735 ~~~~l~-~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~----~y~ 809 (850)
.++.++ +.|.+|+..+ .+=.++|.|.++.++|+++-+++.+.+...-..+..+......+..+...+... ...
T Consensus 41 ~~~~~l~~~~~~i~~~d--~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (167)
T 1v9y_A 41 IFFPALEQNMMGAVLIN--ENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRE 118 (167)
T ss_dssp CHHHHHHTCSSEEEEEC--TTSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC----------CE
T ss_pred HHHHHHHhCCCCEEEEC--CCCcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCcccccceE
Confidence 345666 4789988876 456899999999999999999999998877766665555556666666555331 122
Q ss_pred eeEEccCCCcEEEeeeEEeEeecCCCce
Q 003071 810 GICLSSMGRPISYERAVAWKVLNEEENA 837 (850)
Q Consensus 810 GvRiss~Grrf~i~~a~vW~l~d~~g~~ 837 (850)
-....+.|+.++++-.. -.+ +++|..
T Consensus 119 ~~~~~~~g~~~~~~~~~-~~~-~~~g~~ 144 (167)
T 1v9y_A 119 LQLEKKDGSKIWTRFAL-SKV-SAEGKV 144 (167)
T ss_dssp EEEECTTSCEEEEEEEE-EEE-EETTEE
T ss_pred EEEEcCCCcEEEEEEEE-EEE-ecCCCE
Confidence 23356778887775332 233 556654
No 129
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=94.22 E-value=0.035 Score=48.17 Aligned_cols=82 Identities=17% Similarity=0.122 Sum_probs=52.1
Q ss_pred CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHH-Hhcccc---CCCeeEEccCC
Q 003071 742 HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIM-QQGFMC---LQSGICLSSMG 817 (850)
Q Consensus 742 ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~-~qG~~~---~y~GvRiss~G 817 (850)
.+++|+..+.+ +=.+.|+|++|.+||+|+-+|+.+.+...-..+..++....+..+.. ..|... .+.-....+.|
T Consensus 7 ~~~~i~~~d~~-~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG 85 (114)
T 1ll8_A 7 FNKAIFTVDAK-TTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIISRSG 85 (114)
T ss_dssp TTCEEEEEETT-TCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEECCTTC
T ss_pred CCceEEEEECC-CCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHHHHHHHHHhhccCCcceeccCcEEEEEecCC
Confidence 45788877642 14799999999999999999999998765555544433333332221 122211 11112357899
Q ss_pred CcEEEee
Q 003071 818 RPISYER 824 (850)
Q Consensus 818 rrf~i~~ 824 (850)
+.|.++-
T Consensus 86 ~~~~v~~ 92 (114)
T 1ll8_A 86 EKIPVSV 92 (114)
T ss_dssp CCEEEEC
T ss_pred CEEEEEE
Confidence 9998864
No 130
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=93.88 E-value=1 Score=47.40 Aligned_cols=146 Identities=14% Similarity=0.221 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChH
Q 003071 402 ALRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPA 481 (850)
Q Consensus 402 sl~kLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~ 481 (850)
+=+.|+.-.+.+...-. ..++|..... .++|+|..+... | .++-++.+-+ ++||+
T Consensus 47 ~~~~l~~~n~~al~~l~---~~~gW~~~~~--~~gv~Vy~~~~~------------------~-~l~~k~~~~v-~~~~~ 101 (258)
T 3fo5_A 47 NQVYLSYNNVSSLKMLV---AKDNWVLSSE--ISQVRLYTLEDD------------------K-FLSFHMEMVV-HVDAA 101 (258)
T ss_dssp GHHHHHHHHHHHHHHHH---TCSCCEEEEE--ETTEEEEEEECS------------------S-CEEEEEEEEE-SSCHH
T ss_pred cceecccCCHHHHHhhh---ccCCCEEEec--CCCeEEEEEECC------------------C-ceEEEEEEEE-eCCHH
Confidence 77778877666555333 5689987653 568899874321 1 3455777778 79999
Q ss_pred HHHHHHhh--hchhhcccccchhhHhhhhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEeeccccccccCCCCC
Q 003071 482 ILLRFLRE--HRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPS 559 (850)
Q Consensus 482 ~lf~FLRd--~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~ 559 (850)
.||++|.| .|.+||... ++ .+++.+|. ..++|- ++... .....+-+|
T Consensus 102 ~v~~~L~D~~~R~~WD~~~---------~~--------------~~vle~id----~~~ivY--~~~~p--~~~~~v~~R 150 (258)
T 3fo5_A 102 QAFLLLSDLRQRPEWDKHY---------RS--------------VELVQQVD----EDDAIY--HVTSP--ALGGHTKPQ 150 (258)
T ss_dssp HHHHHHHCGGGGGGTCTTC---------CE--------------EEEEEEEE----TTEEEE--EEEEC--CCTTCSSCE
T ss_pred HHHHHHhCchhHhHhhhhc---------cE--------------EEEEEEcC----CCeEEE--EEecC--CccCCCCCC
Confidence 99999997 799999641 11 34444442 223443 43221 111234567
Q ss_pred ceEEEeeccCCCCCCCCceeEEE-EeeccCC----CCCCC--CccCCccEEecC
Q 003071 560 DIFLLQLCSGVDENAVGNCAELV-FAPIDAS----FSDDA--PIIPSGFRIIPL 606 (850)
Q Consensus 560 ~~liLQe~~~~De~~~G~~s~vV-yAPvD~~----ds~~v--~LLPSGF~IlP~ 606 (850)
|..+|... ..++ ..|. .+|| .-.|+-+ -+.+| ..+|+||.|-|+
T Consensus 151 DFV~lr~~-r~~~-~~G~-~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~ 201 (258)
T 3fo5_A 151 DFVILASR-RKPC-DNGD-PYVIALRSVTLPTHRETPEYRRGETLCSGFCLWRE 201 (258)
T ss_dssp EEEEEEEE-ECCS-STTC-CEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEE
T ss_pred EEEEEEEE-Eecc-CCCC-EEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEEC
Confidence 77777753 2221 2443 2443 3345433 23443 699999999994
No 131
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=93.51 E-value=1.3 Score=44.80 Aligned_cols=145 Identities=17% Similarity=0.189 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHH
Q 003071 403 LRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAI 482 (850)
Q Consensus 403 l~kLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~ 482 (850)
+.+.+...+..|.... ..+|..... .++|+|..+...+ .+|-+. ++..-+ ++||+.
T Consensus 26 ~~~~~~e~l~~~~~~~----~~~W~~~~~--~~gv~vy~~~~~~---------------~~~~~~--k~~~~v-~~~~~~ 81 (224)
T 1jss_A 26 ISTKLQNTLIQYHSIE----EDEWRVAKK--AKDVTVWRKPSEE---------------FNGYLY--KAQGVM-DDVVNN 81 (224)
T ss_dssp HHHHHHHHHHHHTTSC----GGGCEEEEE--ETTEEEEEEECSS---------------SSSEEE--EEEEEE-SSCHHH
T ss_pred HHHHHHHHHHHHhhhC----CCCCEEEEE--CCCEEEEEEeccC---------------CCceEE--EEEEEE-eCCHHH
Confidence 4444444444443322 568986643 3789999885531 023344 445556 899999
Q ss_pred HHHHHhh--hchhhcccccchhhHhhhhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEeeccccccccCCCCCc
Q 003071 483 LLRFLRE--HRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSD 560 (850)
Q Consensus 483 lf~FLRd--~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~ 560 (850)
||++|.| .|.+||... .+ .+.+-+| +....|--....... -.-+-+||
T Consensus 82 v~~~l~d~~~r~~Wd~~~---------~~--------------~~vle~i----d~~~~I~y~~~~~~~---~~~v~~RD 131 (224)
T 1jss_A 82 VIDHIRPGPWRLDWDRLM---------TS--------------LDVLEHF----EENCCVMRYTTAGQL---LNIISPRE 131 (224)
T ss_dssp HHHHHSSSTTHHHHCSSE---------EE--------------EEEEEEC----STTEEEEEEEECCBT---TTTBCCEE
T ss_pred HHHHHhCcccccccccce---------ee--------------EEEEEEc----CCCeEEEEEEccccc---CCCCCCCe
Confidence 9999998 899999642 11 3344444 222223222221110 01145678
Q ss_pred eEEEeeccCCCCCCCCceeEEEEeeccCCC--CCC--CCccCCccEEecC
Q 003071 561 IFLLQLCSGVDENAVGNCAELVFAPIDASF--SDD--APIIPSGFRIIPL 606 (850)
Q Consensus 561 ~liLQe~~~~De~~~G~~s~vVyAPvD~~d--s~~--v~LLPSGF~IlP~ 606 (850)
.+++... ..++ .| .+++.-.||-++ +.+ +.++++||.|-|+
T Consensus 132 fv~~r~~-~~~~--~~--~vi~~~Sv~hp~~~~g~VR~~~~~~g~~i~p~ 176 (224)
T 1jss_A 132 FVDFSYT-VGYE--EG--LLSCGVSVEWSETRPEFVRGYNHPCGWFCVPL 176 (224)
T ss_dssp EEEEEEE-EEET--TE--EEEEEEECCCCCCCTTSEECEECSEEEEEEEE
T ss_pred EEEEEEE-EEcC--Ce--EEEEEeeeecCCCCCCCEEEEecccEEEEEEc
Confidence 8888763 2332 23 456666676543 333 3478888888883
No 132
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=93.17 E-value=2.3 Score=41.54 Aligned_cols=54 Identities=17% Similarity=0.414 Sum_probs=40.0
Q ss_pred CCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHHHHHHhh--hchhhccc
Q 003071 424 EGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLRE--HRSEWADS 497 (850)
Q Consensus 424 ~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l 497 (850)
++|..... .++|+|..+...+ ..+..-++...+ +.||+.+|++|.| .|.+||..
T Consensus 3 ~~W~~~~~--~~gv~v~~~~~~~-----------------~~~~~~k~~~~v-~~s~~~v~~~l~D~~~~~~W~~~ 58 (189)
T 3qsz_A 3 DGWSLAKD--AEGIKVYVRNVEG-----------------SPLREFRGEVRL-KAAADDVVKVLRDANAFRQWMPD 58 (189)
T ss_dssp CCCEEEEE--ETTEEEEEECCTT-----------------CSSCEEEEEEEE-SSCHHHHHHHHHCGGGGGGTSTT
T ss_pred CCCEEEEc--CCCEEEEEEeCCC-----------------CCeEEEEEEEEE-ECCHHHHHHHHHhHHHhhhHHHh
Confidence 57987653 5689999887641 112345556777 7999999999997 89999964
No 133
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=92.90 E-value=0.91 Score=35.80 Aligned_cols=93 Identities=8% Similarity=-0.070 Sum_probs=55.0
Q ss_pred CCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcEEE
Q 003071 743 SDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISY 822 (850)
Q Consensus 743 p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i 822 (850)
|.+|+..+. +=.++|.|+++.++|+++-+++.+.+...- +.. .+....+.++.+.|... . ++.. .|...++
T Consensus 2 ~~~i~~~d~--~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~~-~~~~~~~~~~~~~~~~~--~-~~~~-~~~~~~~ 72 (96)
T 3a0s_A 2 ETAIITLSK--DGRITEWNKKAEQLFGLKKENVLGRRLKDL--PDF-EEIGSVAESVFENKEPV--F-LNFY-KFGERYF 72 (96)
T ss_dssp CCEEEEEET--TSBEEEECHHHHHHHCCCHHHHTTSBGGGS--TTC-HHHHHHHHHHHHHTCCE--E-EEEE-EETTEEE
T ss_pred CceEEEEcC--CCCEeehhHHHHHHhCCCHHHhcCCCHHHC--cch-HHHHHHHHHHhccCCeE--E-EEEE-cCCcEEE
Confidence 556666654 457999999999999999999999876544 222 22333444555544322 1 2221 2222233
Q ss_pred eeeEEeEeecCCCc-eEEEEEecc
Q 003071 823 ERAVAWKVLNEEEN-AHCICFMFI 845 (850)
Q Consensus 823 ~~a~vW~l~d~~g~-~~gqAa~F~ 845 (850)
...+-.+.|++|. ..|...+|.
T Consensus 73 -~~~~~p~~~~~~~~~~g~v~~~~ 95 (96)
T 3a0s_A 73 -NIRFSPFRNAKTQLLEGVIITID 95 (96)
T ss_dssp -EEEEEEEECTTTCCEEEEEEEEE
T ss_pred -EEEEEEeEcCCCCeeeEEEEEec
Confidence 3344556677654 567766664
No 134
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=92.67 E-value=2.2 Score=42.94 Aligned_cols=192 Identities=14% Similarity=0.165 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHH
Q 003071 403 LRALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAI 482 (850)
Q Consensus 403 l~kLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~ 482 (850)
-.++++.-+..+..-+. ..++|.... ...++|.|..++.. + .|.++ ++...+ ++||+.
T Consensus 12 y~~~~~~~~~~~l~~~~--~~~gW~~~~-~~~~gv~vy~~~~~----~------------~g~~~--k~~~~v-~~~~~~ 69 (221)
T 3p0l_A 12 YLQQGEEAMQKALGILS--NQEGWKKES-QQDNGDKVMSKVVP----D------------VGKVF--RLEVVV-DQPMER 69 (221)
T ss_dssp HHHHHHHHHHHHHHHHH--SCTTCEEEE-ECTTSCEEEEEECS----S------------SCEEE--EEEEEE-SSCHHH
T ss_pred HHHHHHHHHHHHHHHHh--CCCCCeEee-ecCCCcEEEEEEcC----C------------CceEE--EEEEEE-cCCHHH
Confidence 44556655555554444 356898773 12466788887742 1 13344 555667 899999
Q ss_pred HHHHHh-h--hchhhcccccchhhHhhhhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEeeccccccccCCCCC
Q 003071 483 LLRFLR-E--HRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPS 559 (850)
Q Consensus 483 lf~FLR-d--~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~ 559 (850)
||++|. | .|.+||... ++ .+++-.+.. +. .|+..... +.--.-+-+|
T Consensus 70 v~~~l~~d~~~r~~Wd~~~---------~~--------------~~vle~~~~----~t--~I~y~~~~-~~~~~~v~~R 119 (221)
T 3p0l_A 70 LYEELVERMEAMGEWNPNV---------KE--------------IKVLQKIGK----DT--FITHELAA-EAAGNLVGPR 119 (221)
T ss_dssp HHHHHTTTGGGTTTSCTTC---------SE--------------EEEEEECSS----SE--EEEEEEEC-C---CCSCCE
T ss_pred HHHHHHhccchhhhcCcch---------he--------------EEEEEecCC----Ce--EEEEEeec-cccCCccCCc
Confidence 999995 4 899999642 11 344444422 22 23332110 0000124467
Q ss_pred ceEEEeeccCCCCCCCCceeEEEE-eeccCC----CCCC--CCccCCccEEecCCCCCCCCCCCcccccccccccCCCCC
Q 003071 560 DIFLLQLCSGVDENAVGNCAELVF-APIDAS----FSDD--APIIPSGFRIIPLDSGKDTPSPNRTLDLASALEVGPTGN 632 (850)
Q Consensus 560 ~~liLQe~~~~De~~~G~~s~vVy-APvD~~----ds~~--v~LLPSGF~IlP~~~~~dg~~~~~~ldlas~l~~g~~~~ 632 (850)
|..+|... ..+ .| .+++. -.|+-+ .+.+ +.++++||.|-|++ .
T Consensus 120 Dfv~~r~~-~~~---~~--~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~-----~------------------- 169 (221)
T 3p0l_A 120 DFVSVRCA-KRR---GS--TCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLA-----G------------------- 169 (221)
T ss_dssp EEEEEEEE-EEC---SS--CEEECCEECCCTTSCCCTTSEECEECSCEEEEEEET-----T-------------------
T ss_pred eEEEEEEE-EEc---CC--eEEEEEEeccCCCCCCCCCeEEEeccceEEEEEECC-----C-------------------
Confidence 88887763 233 23 34443 445533 2334 35789999999931 0
Q ss_pred CCCCCCCCCCCCCcceEEEeehhhccccchhhHHhhhhhhhhHHHHHHHHHHHHcC
Q 003071 633 KASGDSSTQCGSTKSVITIAFQFAFEMHLQENVASMARQYVRGIIASVQRVALALS 688 (850)
Q Consensus 633 ~~~g~~~~~~~~~gslLTvaFQ~l~~~~~~~sva~~~~~~v~~v~~tvqri~~AL~ 688 (850)
+ ..+|.+|.-+|+=.......++.. .-...++..+++.++.++.
T Consensus 170 ---~-------~~~t~vt~~~~~Dp~G~iP~~lvn--~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 170 ---S-------PSKTKLTWLLSIDLKGWLPKSIIN--QVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp ---E-------EEEEEEEEEECEECCSSCCHHHHH--HHHHHHHHHHHHHHHHHTC
T ss_pred ---C-------CCcEEEEEEEEecCCCCCCHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 0 136888888777665432232222 1113456678888888886
No 135
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=92.65 E-value=0.71 Score=40.76 Aligned_cols=98 Identities=12% Similarity=0.064 Sum_probs=63.1
Q ss_pred HHHhh-cCCCeEeecCCCCCceeEcccHHHHHhhc------------cCHHHhhcCccccccCccchhHHhhhhHHHHHh
Q 003071 736 LKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLE------------TTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQ 802 (850)
Q Consensus 736 ~~~l~-~ap~avl~h~~~~dP~f~yaN~aaL~l~e------------~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~q 802 (850)
++.++ +.|++|+..+. +=..+|.|++|.+||+ ++-+++++.+...-.... +... .+.+.
T Consensus 7 l~~il~~~~~gviv~D~--~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~~--~~~~----~~~~~ 78 (121)
T 4hi4_A 7 IASALDNVSANVMIADN--DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNP--AHQR----HLLAN 78 (121)
T ss_dssp HHHHHTTSSSEEEEEET--TCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSSH--HHHH----HHHHH
T ss_pred HHHHHhcCCccEEEEcC--CCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCCH--HHHH----HHHhC
Confidence 44555 57999999885 5689999999999997 666777777655433221 1111 22222
Q ss_pred ccccCCCeeEEccCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 803 GFMCLQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 803 G~~~~y~GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
.- .+....+...|+.|. ..+--+.|++|...|.-++|.+
T Consensus 79 ~~--~~~~~~~~~~~~~~~---~~~~pi~~~~g~~~g~v~~~~D 117 (121)
T 4hi4_A 79 LT--GVHKAELNLGGRRFS---LDVVPVFNDANARLGSAVQWTD 117 (121)
T ss_dssp CS--SCEEEEEEETTEEEE---EEEEEEECTTSCEEEEEEEEEE
T ss_pred cC--CCcEEEEEECCEEEE---EEEEEEECCCCCEEEEEEEEEE
Confidence 21 222334444666553 3555677899999999888865
No 136
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=92.09 E-value=2.7 Score=41.73 Aligned_cols=68 Identities=15% Similarity=0.265 Sum_probs=46.1
Q ss_pred HHHHhhhccC--CCCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHHHHHHh
Q 003071 411 SRGFNEALNG--FTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAILLRFLR 488 (850)
Q Consensus 411 ~~~F~~~v~~--s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~lf~FLR 488 (850)
.+.+|..+.. ....+|..... .++|+|..+... + .++..-++...++++||+.||++|.
T Consensus 13 f~~~~~~l~~~~~~~~~W~~~~~--~~~v~v~~~~~~----~-------------~~~~~~k~~~~i~~~~~~~v~~~l~ 73 (214)
T 1ln1_A 13 FWEACAELQQPALAGADWQLLVE--TSGISIYRLLDK----K-------------TGLYEYKVFGVLEDCSPTLLADIYM 73 (214)
T ss_dssp HHHTTHHHHSCCCTTTTCEEEEE--ETTEEEEEEEET----T-------------TTEEEEEEEEEETTSCHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCCCcEEEEE--CCCeEEEEeccC----C-------------CCcEEEEEEEEECCCCHHHHHHHHc
Confidence 3444444433 24568987754 457999887653 1 1244556667783499999999999
Q ss_pred h--hchhhccc
Q 003071 489 E--HRSEWADS 497 (850)
Q Consensus 489 d--~R~eWd~l 497 (850)
| .|.+||..
T Consensus 74 d~~~r~~Wd~~ 84 (214)
T 1ln1_A 74 DSDYRKQWDQY 84 (214)
T ss_dssp CHHHHHHHCTT
T ss_pred CHHHHHHHHHH
Confidence 7 79999964
No 137
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=91.50 E-value=0.49 Score=40.68 Aligned_cols=89 Identities=8% Similarity=-0.001 Sum_probs=60.9
Q ss_pred CceeEcccHHHHHhhccCHHHhhcCcc--ccccCccchhHHhhhhHHHHHhccccCCCeeE-EccCCCcEEEeeeEEeEe
Q 003071 754 LPVFTFANQAGLDMLETTLVALQDITL--EKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC-LSSMGRPISYERAVAWKV 830 (850)
Q Consensus 754 dP~f~yaN~aaL~l~e~~w~~l~~lps--r~sae~~~r~er~~lL~~v~~qG~~~~y~GvR-iss~Grrf~i~~a~vW~l 830 (850)
+-.|.|.|.+..++|+++-+++.+ +. ..-..|.+|+.-.+.+.++.+.|-.... =.| +.+.|+..+++. ..--+
T Consensus 13 ~~~~~~~n~~~~~l~G~~~~e~~~-~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~-e~r~~~~dG~~~w~~~-~~~~~ 89 (115)
T 3h9w_A 13 TMAFEYIGPQIEALLGWPQGSWKS-VEDWATRMHPEDQEWVVNFCVKQSECGVDHEA-DYRALHRDGHYVWIRD-VVHVV 89 (115)
T ss_dssp TTEEEEECTHHHHHHCSCGGGCCB-HHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEE-EEEEECTTSCEEEEEE-EEEEE
T ss_pred CCcEEEEChhHHHHhCCChHHccC-HHHHHHhcCHHHHHHHHHHHHHHHhcCCcccE-EEEEEcCCCCEEEEEE-EEEEE
Confidence 346999999999999999999988 32 2234566676666777777777642221 123 367888888754 34445
Q ss_pred ecCCCceEEEEEecc
Q 003071 831 LNEEENAHCICFMFI 845 (850)
Q Consensus 831 ~d~~g~~~gqAa~F~ 845 (850)
.|++|...+...+..
T Consensus 90 ~d~~G~~~~~~G~~~ 104 (115)
T 3h9w_A 90 RDDSGEVEALIGFMF 104 (115)
T ss_dssp ECTTSCEEEEEEEEE
T ss_pred ECCCCCEEEEEEEEe
Confidence 799998877655543
No 138
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=91.32 E-value=0.22 Score=43.83 Aligned_cols=65 Identities=8% Similarity=0.115 Sum_probs=50.7
Q ss_pred Hhh-cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhcc
Q 003071 738 TLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGF 804 (850)
Q Consensus 738 ~l~-~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~ 804 (850)
.++ ..|++|+..+ .+=.++|.|.++.++|+++-+++.+.+..--.++..+......+.++.+.|-
T Consensus 16 ~il~~~~~~i~~~D--~~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (118)
T 3fg8_A 16 NLYFQGGLGFMALD--EDLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGR 81 (118)
T ss_dssp CSSSCTTCEEEEEC--TTCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCC
T ss_pred HHHhhCCceEEEEC--CCCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCC
Confidence 445 4799998877 4668999999999999999999999987665555555556667777777664
No 139
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=90.56 E-value=1.9 Score=38.69 Aligned_cols=140 Identities=16% Similarity=0.110 Sum_probs=75.0
Q ss_pred ceeEEeeChhhHHHHhcCchhhhhhCCcceEEeeccCCCcchHHHHHHHhhccccccCCceeeEEeeceeeCCCcEEEEE
Q 003071 223 ACGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVCE 302 (850)
Q Consensus 223 ~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVvD 302 (850)
.+..|...+.++-+.|.|.+.|.+-+|.+.-+.+...+.+|. ...+.+-.+ +.+.-+..++... +++.-++..
T Consensus 6 ~~~~i~ap~~~V~~~l~d~~~~~~w~p~~~~~~~~~~~~~g~----~~~~~~~~~--g~~~~~~~~~~~~-~~~~~i~~~ 78 (147)
T 2d4r_A 6 AERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGART----RSRWVAVAM--GKKVRWLEEEEWD-DENLRNRFF 78 (147)
T ss_dssp EEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEE----EEEEEEEET--TEEEEEEEEEEEE-TTTTEEEEE
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhcccccEEEEEEeCCCcc----EEEEEEEeC--CceEEEEEEEEEc-CCCcEEEEE
Confidence 345677789999999999999988888664444443222331 011111111 2223344455432 333322211
Q ss_pred eecCCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCCCccccchhhhchhHHHHHHHHHHHHH-HH
Q 003071 303 RSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAALR-HL 381 (850)
Q Consensus 303 vSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar~w~~aLr-~~ 381 (850)
.+++ + ...+. .-.-+.+.++| |+|+|..+.+....-+..++.+++..-+-=+.+..+.+|+ ++
T Consensus 79 -~~~g----~----~~~~~------~~~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 142 (147)
T 2d4r_A 79 -SPEG----D----FDRYE------GTWVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERV 142 (147)
T ss_dssp -EEEE----S----CSEEE------EEEEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -eccC----C----hhheE------EEEEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1221 1 00111 12345777887 9999999888764334455565554333345667777774 66
Q ss_pred hhhc
Q 003071 382 RQIS 385 (850)
Q Consensus 382 e~la 385 (850)
|+.+
T Consensus 143 e~~~ 146 (147)
T 2d4r_A 143 LAAS 146 (147)
T ss_dssp HHTT
T ss_pred Hhhc
Confidence 6643
No 140
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=90.43 E-value=1.1 Score=45.34 Aligned_cols=115 Identities=11% Similarity=0.066 Sum_probs=64.8
Q ss_pred HHHhCCCCCCCCChhHHHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhh------------ccCHHHhhcCccccccC
Q 003071 719 RCYLGAELLKCEGNESILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDML------------ETTLVALQDITLEKIFD 785 (850)
Q Consensus 719 ~~~~G~~L~~~~~~~~~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~------------e~~w~~l~~lpsr~sae 785 (850)
+++....|+|.......++.+++ .+.+|+.-+. |=..+|+|+++.+|| +++-+++++-+.+.-..
T Consensus 7 ~~~~~~~~~~~~~e~~~l~~iLd~~~~~vii~D~--~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~ 84 (233)
T 3vol_A 7 HHHHSSGLVPRGSHMARIKSALDNVSANVMIADN--DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHK 84 (233)
T ss_dssp -----------CTHHHHHHHHHTTSSSEEEEEET--TSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSS
T ss_pred cccccccCCchHHHHHHHHHHHhcCCCcEEEECC--CCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcC
Confidence 34455567773333344555665 5999998875 669999999999999 56667777766554432
Q ss_pred ccchhHHhhhhHHHHHhccccCCCeeEEccCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 786 DSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 786 ~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
... ....+++. ... .....+...|+.| ..++=-+.|++|.+.|.-..|.+
T Consensus 85 ~~~--~~~~~~~~-----~~~-~~~~~~~~~g~~~---~~~~~Pi~d~~G~~~g~v~~~~D 134 (233)
T 3vol_A 85 NPA--HQRHLLAN-----LTG-VHKAELNLGGRRF---SLDVVPVFNDANERLGSAVQWTD 134 (233)
T ss_dssp SHH--HHHHHHHT-----CCS-CEEEEEEETTEEE---EEEEEEEECTTCCEEEEEEEEEE
T ss_pred CHH--HHHHHHHh-----ccc-ceeEEEEECCEEE---EEEEEEEECCCCCEEEEEEEEeh
Confidence 211 11112211 111 1223344456543 56677788999999998888765
No 141
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=90.29 E-value=0.57 Score=41.71 Aligned_cols=49 Identities=33% Similarity=0.317 Sum_probs=26.6
Q ss_pred chhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 78 RRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 78 RRak~Krr~~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
||+|.|+++....++.....|..+|.. |..++.+|..|+..|++-+..+
T Consensus 28 rrSR~krk~r~~e~~~r~~~Le~EN~~-------Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 28 RKSRDKAKMRNLETQHKVLELTAENER-------LQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHC
Confidence 356666666665555544444444444 4445555556666666655543
No 142
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=88.47 E-value=0.97 Score=39.45 Aligned_cols=46 Identities=39% Similarity=0.432 Sum_probs=23.8
Q ss_pred chhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 003071 78 RRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (850)
Q Consensus 78 RRak~Krr~~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el 130 (850)
||+|.|+++....++.....|.. +|..|..++.+|..|+..|++-+
T Consensus 28 krSR~krk~r~~e~~~r~~~L~~-------eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 28 RKSRDKAKMRNLETQHKVLELTA-------ENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666655555444444444 44444444555555555555443
No 143
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=87.98 E-value=1.3 Score=37.03 Aligned_cols=46 Identities=26% Similarity=0.408 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 003071 79 RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (850)
Q Consensus 79 Rak~Krr~~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~ 131 (850)
|++.|++.....+... .+.+..++..|..++..|+.|++.|++-+.
T Consensus 16 R~R~KKk~~~~~le~~-------~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 16 RYRQKKRAEQEALTGE-------CKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666666555555544 455555555555666667777777776553
No 144
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=86.51 E-value=0.82 Score=38.40 Aligned_cols=98 Identities=9% Similarity=-0.007 Sum_probs=60.2
Q ss_pred HHHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhcc---CHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCC
Q 003071 734 SILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLET---TLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQS 809 (850)
Q Consensus 734 ~~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~---~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~ 809 (850)
...+.+++ .|.+|+..+. +=.++|.|++|.++|++ +-+++.+.+...-..+.. +.++.+.|-...
T Consensus 15 ~~~~~il~~~~~~i~~~d~--~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~-- 83 (118)
T 2w0n_A 15 EQRQAMLQSIKEGVVAVDD--RGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDGTPRR-- 83 (118)
T ss_dssp HHHHHHHHCCCCCCEEEBT--TTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTTCCCC--
T ss_pred HHHHHHHhhccccEEEECC--CCcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccCceec--
Confidence 44566674 7888888774 55799999999999997 778888876654443321 445555554321
Q ss_pred eeEEccCCCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 810 GICLSSMGRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 810 GvRiss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
...+...|+.|.+. +-.+.| +|...|...+|.+
T Consensus 84 ~~~~~~~~~~~~~~---~~p~~~-~g~~~g~v~~~~D 116 (118)
T 2w0n_A 84 DEEITIKDRLLLIN---TVPVRS-NGVIIGAISTFRD 116 (118)
T ss_dssp CCCEESSSCEECCC---EECCCC-SSCCCCEEECCCC
T ss_pred cEEEEECCEEEEEe---eceeee-CCEEEEEEEEEEe
Confidence 22233456544332 223345 7777776666654
No 145
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=86.51 E-value=21 Score=35.86 Aligned_cols=146 Identities=11% Similarity=0.139 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhhhccCCCCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEEEEEeecccccCChHHH
Q 003071 404 RALSQRLSRGFNEALNGFTDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVLCAKASMLLQDVPPAIL 483 (850)
Q Consensus 404 ~kLaqRM~~~F~~~v~~s~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl~A~tS~wL~pvpp~~l 483 (850)
++.++.....|-.-+. ..++|..... ..++++|..+...+ .|.+. ++...+ ++||+.|
T Consensus 24 ~~~~~~a~~~~~~~l~--~~~~W~~~~~-~~~g~~vy~~~~~~----------------~g~~~--k~~~~v-~~~~~~v 81 (229)
T 1em2_A 24 IRQGKEATAVVDQILA--QEENWKFEKN-NEYGDTVYTIEVPF----------------HGKTF--ILKTFL-PCPAELV 81 (229)
T ss_dssp HHHHHHHHHHHHHHHT--TGGGCEEEEE-CTTCCEEEEEEETT----------------TEEEE--EEEEEE-SSCHHHH
T ss_pred HHHHHHHHHHHHHHhh--CCCCCEEEEe-cCCCCEEEEEecCC----------------CCceE--EEEEEe-cCCHHHH
Confidence 3344444434333332 2468987642 23567887765431 13344 444556 8999999
Q ss_pred H-HHHhh--hchhhcccccchhhHhhhhcCCCCCCCCCCCCcccceEecccccCCCCceEEEEEeeccccccccCCCCCc
Q 003071 484 L-RFLRE--HRSEWADSSIDAYSAAAVKAGPCSLPVPRAGNFGGQVILPLAHTIEHEEFLEVIKLENMAHYREDMIMPSD 560 (850)
Q Consensus 484 f-~FLRd--~R~eWd~l~~~~~s~~~~~~~~~~~~~~~~g~~~~q~~~~ia~g~~~~n~vsllr~~~~~~~~~~~~~~~~ 560 (850)
| ++|.| .|.+||... .+ .+.+-.|. .+..| +..+... .-..-+-+||
T Consensus 82 ~~~~~~d~~~r~~Wd~~~---------~~--------------~~vle~~~----~~t~I-~~~~~~p--~~~~~~~~RD 131 (229)
T 1em2_A 82 YQEVILQPERMVLWNKTV---------TA--------------CQILQRVE----DNTLI-SYDVSAG--AAGGVVSPRD 131 (229)
T ss_dssp HHHTTTCHHHHTTTCTTE---------EE--------------EEEEEEET----TTEEE-EEEEECC--BTTTTBCCEE
T ss_pred HHHHHhCccchhhccccc---------ce--------------EEEEEecC----CCeEE-EEEEecC--cCCCCcCCCe
Confidence 9 88886 899999742 11 34444442 22223 1112111 0011245678
Q ss_pred eEEEeeccCCCCCCCCceeEEEEeeccCCC----CCC--CCccCCccEEecC
Q 003071 561 IFLLQLCSGVDENAVGNCAELVFAPIDASF----SDD--APIIPSGFRIIPL 606 (850)
Q Consensus 561 ~liLQe~~~~De~~~G~~s~vVyAPvD~~d----s~~--v~LLPSGF~IlP~ 606 (850)
..++.-. ..++ +. -+++...|+-+. +.+ +.++++||.|-|+
T Consensus 132 fv~~r~~-~~~~---~~-~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~ 178 (229)
T 1em2_A 132 FVNVRRI-ERRR---DR-YLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKS 178 (229)
T ss_dssp EEEEEEE-EECS---SE-EEEEEEECCCTTSCCCTTSEECEECSEEEEEEEC
T ss_pred eEEEEEE-EEcC---CE-EEEEEecccCCCCCCCCCCEeeeecccEEEEEec
Confidence 8887764 3332 22 466666776542 222 4578999999994
No 146
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=86.13 E-value=1.8 Score=38.84 Aligned_cols=78 Identities=8% Similarity=0.011 Sum_probs=51.3
Q ss_pred cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeE-EccCCCc
Q 003071 741 HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC-LSSMGRP 819 (850)
Q Consensus 741 ~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR-iss~Grr 819 (850)
.++++|+.++ +|=.|.|.|.++.++|+|+-+|+++.+..--..|.+++.-.+.+ .+++-. ...-.| +.+.|..
T Consensus 7 ~~~d~i~v~d--~~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~---~~~~~~-~~~e~r~~~kdG~~ 80 (111)
T 2vlg_A 7 TKTDIHAVLA--SNGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYF---YNEHHL-MPCTFRFIKKDHTI 80 (111)
T ss_dssp --CCEEEEEC--TTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHH---HCSCCS-SCEEEEEECTTSCE
T ss_pred cCCCEEEEEc--CCCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHH---hccCCC-ccEEEEEEcCCCCE
Confidence 4677888776 46689999999999999999999998764444566655543333 222211 111234 3688988
Q ss_pred EEEee
Q 003071 820 ISYER 824 (850)
Q Consensus 820 f~i~~ 824 (850)
++++-
T Consensus 81 ~wve~ 85 (111)
T 2vlg_A 81 VWVEA 85 (111)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88864
No 147
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=86.04 E-value=1.7 Score=41.34 Aligned_cols=90 Identities=18% Similarity=0.189 Sum_probs=57.5
Q ss_pred HHHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeE
Q 003071 734 SILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC 812 (850)
Q Consensus 734 ~~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 812 (850)
..++.+++ .|.+|+..+. +=.+.|+|++|.++|+++-+++.+.|..--..+.. +.++.+.|-. ...+..
T Consensus 80 ~~l~~il~~~~~gvi~~D~--~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~ 149 (190)
T 2jhe_A 80 LALSALLEALPEPVLSVDM--KSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFN-------FLRWLESEPQ-DSHNEH 149 (190)
T ss_dssp HHHHHHHHHCSSCEEEECT--TCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCC-------HHHHHHTCCC-SCEEEE
T ss_pred HHHHHHHHhCCCcEEEEcC--CCCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCC-------HHHHHhcCCC-CCcceE
Confidence 34566674 7999998875 56899999999999999999999988765544322 2334444421 122333
Q ss_pred EccCCCcEEEeeeEEeEeecCCCc
Q 003071 813 LSSMGRPISYERAVAWKVLNEEEN 836 (850)
Q Consensus 813 iss~Grrf~i~~a~vW~l~d~~g~ 836 (850)
+...|+.|.+. +-.+.+++|.
T Consensus 150 ~~~~g~~~~~~---~~pi~~~~~~ 170 (190)
T 2jhe_A 150 VVINGQNFLME---ITPVYLQDEN 170 (190)
T ss_dssp EEETTEEEEEE---EEEETTTTEE
T ss_pred EEECCeEEEEE---EEEEEecCCC
Confidence 44467766543 3334454554
No 148
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=85.78 E-value=2 Score=35.77 Aligned_cols=45 Identities=24% Similarity=0.393 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 003071 79 RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (850)
Q Consensus 79 Rak~Krr~~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el 130 (850)
|++.|++.....++.+...|..+|.. |..++..|+.|...|+..+
T Consensus 16 rcR~rKk~~~~~Le~~v~~L~~~n~~-------L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 16 KCRNRRRELTDTLQAETDQLEDEKSA-------LQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544444444444 4444555555555555544
No 149
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=85.69 E-value=2.2 Score=46.35 Aligned_cols=91 Identities=10% Similarity=-0.017 Sum_probs=67.0
Q ss_pred CCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcEEEeeeEEeEeec
Q 003071 753 ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPISYERAVAWKVLN 832 (850)
Q Consensus 753 ~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf~i~~a~vW~l~d 832 (850)
.|=.|+|.|.++.++++|+-+||++.+..--.-|.++..-...+.++.+.|-.....==.+.+.|.-+|++- ..--+.|
T Consensus 259 ~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vWv~~-~~~~v~~ 337 (361)
T 4f3l_A 259 LEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQT-HYYITYH 337 (361)
T ss_dssp TTSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEEEEE-EEEEEEC
T ss_pred CCceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEEEEE-EEEEEEc
Confidence 467899999999999999999999988876667777777777788888888653322224578888888853 4344556
Q ss_pred C-CCceEEEEEec
Q 003071 833 E-EENAHCICFMF 844 (850)
Q Consensus 833 ~-~g~~~gqAa~F 844 (850)
+ +|...+.-.+.
T Consensus 338 ~~~g~~~~iv~~~ 350 (361)
T 4f3l_A 338 QWNSRPEFIVCTH 350 (361)
T ss_dssp TTTCCEEEEEEEE
T ss_pred CCCCCeeEEEEEE
Confidence 6 68776655443
No 150
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=85.68 E-value=2.2 Score=35.18 Aligned_cols=34 Identities=26% Similarity=0.206 Sum_probs=22.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 003071 97 KLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (850)
Q Consensus 97 ~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el 130 (850)
.+....+.+..++..|..+++.|+.|+..|++.+
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455556666666667777777888877765
No 151
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=83.64 E-value=1.7 Score=51.12 Aligned_cols=102 Identities=15% Similarity=0.045 Sum_probs=73.8
Q ss_pred cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEccCCCcE
Q 003071 741 HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSMGRPI 820 (850)
Q Consensus 741 ~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~Grrf 820 (850)
.++..|+..+. +-.++|.|.+..+|++++-+|..+.+......+..++....+++.+ .+|-.....=.-..+.|+.|
T Consensus 526 ~a~~~i~~~D~--~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~~~~i~~~l-~~g~~~~~E~~~~~~dG~~~ 602 (635)
T 4eho_A 526 ASMQPVLITDA--EGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDFLRNVAELI-DHGRGWRGEVLLRGAGNRPL 602 (635)
T ss_dssp HCSSCCEEEET--TCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHHHHHHHHHH-HHCCCBCCCCEECCSSSSCE
T ss_pred hCCCcEEEECC--CCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHHHHHHHHHH-HcCCcEEEEEEEEccCCcEE
Confidence 57888888765 7789999999999999999999999877666565555555555444 44432222222345788888
Q ss_pred EEeeeEEeEeecCCCceEEEEEeccc
Q 003071 821 SYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 821 ~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
+++--. =-+.|++|++.|-.++|.|
T Consensus 603 ~~~~~~-~pv~d~~G~v~g~v~i~~D 627 (635)
T 4eho_A 603 PLAVRA-DPVTRTEDQSLGFVLIFSD 627 (635)
T ss_dssp ECCCCE-EEECSTTSSCCEEEECCCC
T ss_pred EEEEEE-EEEECCCCCEEEEEEEEEe
Confidence 875432 2578999999999988866
No 152
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=81.51 E-value=7.2 Score=32.02 Aligned_cols=43 Identities=28% Similarity=0.355 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003071 79 RCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVY 121 (850)
Q Consensus 79 Rak~Krr~~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~ 121 (850)
|++.|++.....++.....+..+|..|..+...|+.++.+|+.
T Consensus 15 k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 15 RSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666667777777777777777777777777777777664
No 153
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.68 E-value=0.47 Score=40.54 Aligned_cols=39 Identities=21% Similarity=0.429 Sum_probs=36.6
Q ss_pred HHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecc
Q 003071 34 QVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQ 76 (850)
Q Consensus 34 Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQ 76 (850)
-.+.|+++|+..+.+.+.....|+.+. +|+..|||-||-
T Consensus 17 ~~e~L~~Yy~~hk~L~EeDl~~L~~ks----kms~qqvkdwFa 55 (70)
T 2ys9_A 17 DIQPLERYWAAHQQLRETDIPQLSQAS----RLSTQQVLDWFD 55 (70)
T ss_dssp CCHHHHHHHHHTCCCCTTHHHHHHHHT----TCCHHHHHHHHH
T ss_pred cchHHHHHHHHhcccchhhHHHHHHHh----CCCHHHHHHHHH
Confidence 357899999999999999999999999 999999999994
No 154
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=78.11 E-value=2.7 Score=34.75 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=16.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 003071 99 TAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (850)
Q Consensus 99 ~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el 130 (850)
....+.+..++..|..++..|+.|+..|++.+
T Consensus 28 e~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 28 EEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555666666666666554
No 155
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=75.72 E-value=4.8 Score=34.37 Aligned_cols=43 Identities=23% Similarity=0.272 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhH
Q 003071 82 EKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENT 124 (850)
Q Consensus 82 ~Krr~~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~ 124 (850)
.++.+.-..|+..-..+...+..+..++..|..++..|..||.
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343344444444444444444444444444444444444443
No 156
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=74.02 E-value=9.4 Score=33.53 Aligned_cols=42 Identities=29% Similarity=0.283 Sum_probs=27.5
Q ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 003071 90 RLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (850)
Q Consensus 90 ~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~ 131 (850)
.++.+.+.|+.+|..+.+++..+......|+.||++|++|..
T Consensus 24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 445556666666666666666665555667777777777764
No 157
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=73.54 E-value=13 Score=33.30 Aligned_cols=106 Identities=7% Similarity=-0.076 Sum_probs=66.5
Q ss_pred HHHhh-cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCc--cccccCccchhHHhhhhHHHHHhccccCCCeeE
Q 003071 736 LKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDIT--LEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC 812 (850)
Q Consensus 736 ~~~l~-~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lp--sr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 812 (850)
++.+. .++..|.-.+.. -..+|.|.+..++|+++-.++.+.. +.....|.+|+.-...+.++.+.|-.... =.|
T Consensus 11 l~~~~~~~~~g~w~~d~~--~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~-e~r 87 (142)
T 3mr0_A 11 FQLAVSGASAGLWDWNPK--TGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDV-EYR 87 (142)
T ss_dssp HHHHHHHTTCEEEEECTT--TCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCEEE-EEE
T ss_pred HHHHHHhCCcEEEEEEcC--CCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCceEE-EEE
Confidence 34444 467776655543 3467899999999999998876532 23334577777666777777766533221 123
Q ss_pred -EccCCCcEEEeeeEEeEeecCCCceEEEEEecc
Q 003071 813 -LSSMGRPISYERAVAWKVLNEEENAHCICFMFI 845 (850)
Q Consensus 813 -iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~ 845 (850)
+.+.|...+++. ..--+.|++|...+...++.
T Consensus 88 ~~~~~G~~~w~~~-~~~~~~d~~g~~~~~~G~~~ 120 (142)
T 3mr0_A 88 VRTRSGDFRWIQS-RGQALWNSAGEPYRMVGWIM 120 (142)
T ss_dssp EECTTSCEEEEEE-EEEEEECTTSCEEEEEEEEE
T ss_pred EECCCCCEEEEEE-EEEEEECCCCCEEEEEEEEE
Confidence 357788777753 33346799998877655543
No 158
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=72.50 E-value=4.9 Score=33.51 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 108 ENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 108 e~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
.+..|+.++.+|..||..|+.++.++
T Consensus 31 ~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555666666666655554
No 159
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=71.88 E-value=11 Score=34.01 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=27.5
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 003071 91 LQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQN 132 (850)
Q Consensus 91 l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~ 132 (850)
++.+|..++...+..-.....|+.++.+|+.||.+|++|-+.
T Consensus 49 le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 49 MEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444445567788888899999998888654
No 160
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=70.75 E-value=5.4 Score=41.53 Aligned_cols=99 Identities=9% Similarity=-0.030 Sum_probs=59.7
Q ss_pred HHhh-cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeEEcc
Q 003071 737 KTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSS 815 (850)
Q Consensus 737 ~~l~-~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss 815 (850)
+.++ ..|++|+..+. |=.++|+|++|.++|+++-+++.+.+...-.++ ++....+.++.+.|--. -++.-.
T Consensus 11 ~~i~~~~~~~i~~~d~--~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~ 82 (349)
T 3a0r_A 11 ESILESLETAIITLSK--DGRITEWNKKAEQLFGLKKENVLGRRLKDLPDF---EEIGSVAESVFENKEPV---FLNFYK 82 (349)
T ss_dssp CSSGGGSSSEEEEEES--SSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTT---THHHHHHHHHHHHCCCC---EEECCC
T ss_pred HHHHhhhcCeEEEECC--CCCEEeeHHHHHHHhCCCHHHHcCcCHHHCcCh---hHHHHHHHHHHhcCCce---eecccc
Confidence 3455 47999998875 568999999999999999999999876644222 23334455555544210 111111
Q ss_pred -CCCcEEEeeeEEeEeecCCCce-EEEEEeccc
Q 003071 816 -MGRPISYERAVAWKVLNEEENA-HCICFMFIN 846 (850)
Q Consensus 816 -~Grrf~i~~a~vW~l~d~~g~~-~gqAa~F~~ 846 (850)
.++.|.+ .+-.+.|++|.. .|...++.+
T Consensus 83 ~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~D 112 (349)
T 3a0r_A 83 FGERYFNI---RFSPFRNAKTQLLEGVIITIDD 112 (349)
T ss_dssp BTTBCCEE---EEEEECCTTTTSSCEEEEEEEC
T ss_pred cCceEEEE---EEEEEEcCCCceeeEEEEEEEe
Confidence 2333332 334455666654 566666654
No 161
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=70.22 E-value=16 Score=35.07 Aligned_cols=122 Identities=14% Similarity=0.061 Sum_probs=69.3
Q ss_pred cceeEEeeChhhHHHHhcCchhhhhhCCcceEEeeccCCCcchHHHHHHHhhccccccCCceeeEEeeceeeCCCcEEEE
Q 003071 222 RACGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVC 301 (850)
Q Consensus 222 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVv 301 (850)
..+-+|.-.+..+-+.+-|.++|-+.+|-+.-+.+...+.++ +.+++.+.- -..++-+.-|+...-+ +.-+..
T Consensus 8 ~~si~I~ap~~~V~~~v~D~~~~p~~~P~~~~~~v~~~~~~~----~~~~~~~~~--~G~~~~~~s~~~~~~~-~~~i~~ 80 (172)
T 3tfz_A 8 EHTVTVAAPADLVWEVLADVLGYADIFPPTEKVEILEEGQGY----QVVRLHVDV--AGEINTWTSRRDLDPA-RRVIAY 80 (172)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGHHHHCSSEEEEEEEEEETTE----EEEEEEEEE--TTEEEEEEEEEEEETT-TTEEEE
T ss_pred EEEEEeCCCHHHHHHHHHhHHHHHhhCcccceEEEEecCCCE----EEEEEEEec--CCEEEEEEEEEEEeCC-CCEEEE
Confidence 456677788999999999999999999977555554433222 122333211 1223333333333222 221111
Q ss_pred EeecCCCCCCCCCCCCCCccceeecCcceE-EeeCCCCceEEEEEEeeeccCCCccccchhhhc
Q 003071 302 ERSLNNTQNGPSMPQAPHFVRAEMLPSGYL-IRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYE 364 (850)
Q Consensus 302 DvSld~~~~~~~~~~~~~~~r~rrlPSGcl-Iq~~~nG~skVtwVeH~e~d~~~vh~lyRpl~~ 364 (850)
.+++. ++ +|. .=.|.. +.+.++|+|+|+|.-+.++....+..++.++..
T Consensus 81 -~~~~~--~g-------pf~----~~~g~w~f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~ 130 (172)
T 3tfz_A 81 -RQLET--AP-------IVG----HMSGEWRAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLT 130 (172)
T ss_dssp -EEEEC--CT-------TEE----EEEEEEEEEEEETTEEEEEEEEEEEECCCCTTSSBTTTBC
T ss_pred -EEeeC--CC-------Chh----hcEEEEEEEECCCCcEEEEEEEEEEEcChhHHHhhccccC
Confidence 12211 01 111 002333 567777899999999999988778777777653
No 162
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=69.47 E-value=19 Score=39.06 Aligned_cols=89 Identities=13% Similarity=0.190 Sum_probs=65.1
Q ss_pred CCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCC---C-ee-EEccCC
Q 003071 743 SDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQ---S-GI-CLSSMG 817 (850)
Q Consensus 743 p~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y---~-Gv-Riss~G 817 (850)
...|.-|+ +|=.|+|.|.++.++++|+-+||++.+..--.-|.++..-.+.+.+++++|-..+. + =. .+.+.|
T Consensus 154 ~~fi~r~~--~dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kdG 231 (339)
T 3rty_A 154 PKFAIRHT--ATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNG 231 (339)
T ss_dssp CEEEEEEE--TTCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTTS
T ss_pred ceEEEEEC--CCCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccCC
Confidence 34555565 46789999999999999999999999877667788888777888888887764321 1 13 357889
Q ss_pred CcEEEeeeEEeE-eecCCC
Q 003071 818 RPISYERAVAWK-VLNEEE 835 (850)
Q Consensus 818 rrf~i~~a~vW~-l~d~~g 835 (850)
.-.|++ +-|+ ++|..+
T Consensus 232 ~~vWle--t~~~~~~np~s 248 (339)
T 3rty_A 232 CYVLLE--TEWTSFVNPWS 248 (339)
T ss_dssp CEEEEE--EEEEEEECTTT
T ss_pred CEEEEE--EEEEEEECCCC
Confidence 888886 3454 456543
No 163
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=68.35 E-value=19 Score=29.81 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 102 NKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 102 n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
.+.+..+.+.|+.+-..|+.+...|+.|+..+
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444555555555554433
No 164
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=68.26 E-value=12 Score=30.83 Aligned_cols=33 Identities=33% Similarity=0.470 Sum_probs=27.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003071 96 RKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQ 128 (850)
Q Consensus 96 ~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~ 128 (850)
..|..-|..+.+|.+.++++++.|+.||..||.
T Consensus 30 QQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 30 QQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 346667888888999999999999999999874
No 165
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=67.55 E-value=11 Score=31.13 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHH
Q 003071 80 CREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVS 117 (850)
Q Consensus 80 ak~Krr~~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~ 117 (850)
++.|++.....++.....+..+|..|..+...|..++.
T Consensus 16 ~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 16 SRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333344444444444444444444333
No 166
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=66.78 E-value=27 Score=28.84 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhh
Q 003071 109 NDRLQKQVSQLVYENTFFRQQTQN 132 (850)
Q Consensus 109 ~~~l~~~~~~L~~En~~Lk~el~~ 132 (850)
...|+.++..|..+|..|+.++..
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~ 48 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIAN 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555543
No 167
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=66.75 E-value=22 Score=31.49 Aligned_cols=42 Identities=12% Similarity=-0.012 Sum_probs=24.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhcccc
Q 003071 96 RKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNAATLA 137 (850)
Q Consensus 96 ~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~~~~~ 137 (850)
++-+.....+..+...|+.+-.+|+.+...|+.|+..+..+.
T Consensus 32 ~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555556666666666666666666766664443
No 168
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=63.32 E-value=34 Score=32.41 Aligned_cols=142 Identities=8% Similarity=0.083 Sum_probs=77.8
Q ss_pred cceeEEeeChhhHHHHhcCchhhhhhCCcceEEeeccCCCcchHHHHHHHhhccccccCCceeeEEeeceeeCCCcEEEE
Q 003071 222 RACGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVVC 301 (850)
Q Consensus 222 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~waVv 301 (850)
..+.+|.-.+..+-+.+.|.++|...+|..........| ....+.+++.+- -...|+-+..||...-+ +.-+..
T Consensus 10 ~~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~~~~~~~---~~~~~~a~l~vg--~~~~~~~~~s~~~~~~~-~~~I~~ 83 (161)
T 3p9v_A 10 NRDLEIPASYDEVFDLLADVPKSASHFPKVDKLVDLGNN---AYRWEMEKVGVD--KHAIQSVYACTYHADKE-AGKITW 83 (161)
T ss_dssp EEEEEESSCHHHHHHHHTCHHHHHTTSTTEEEEEEEETT---EEEEEECCBSSG--GGCBCCEEEEEEEEETT-TTEEEE
T ss_pred EEEEEEcCCHHHHHHHHhChhhhHhhCCCeEEEEEcCCC---ceEEEEEEEeee--eEEEEEEEEEEEEEcCC-CCEEEE
Confidence 346678889999999999999999999987665433322 111111223222 12347788888876542 333222
Q ss_pred EeecCCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCCCccccchhhhchhHHHHHHHHHHHH-HH
Q 003071 302 ERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAAL-RH 380 (850)
Q Consensus 302 DvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar~w~~aL-r~ 380 (850)
. ++++ + |.+ .+-.-.-+++.++|.|+|+|.=+.|.. ..++.++..+...-+--++++.+.+. +.
T Consensus 84 ~-~~~g----~-------~~~--~l~g~w~f~p~~~g~t~V~~~~~~e~~-~pl~~ll~~~~~~~~~~~~~~~v~af~~r 148 (161)
T 3p9v_A 84 S-PIKG----E-------GNG--VVSGSWTLSAKGDNATAVKFQTSAELT-VPLPSLLKLAISPVIKHEFNSLVDTYMAN 148 (161)
T ss_dssp E-ECTT----S-------TTE--EEEEEEEEEESSSSCEEEEEEEEEEEE-ECSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred E-EecC----c-------cce--eEEEEEEEEECCCCeEEEEEEEEEEEc-CcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1221 1 110 111234457788888999999888876 12344444333111111444555544 34
Q ss_pred Hhhh
Q 003071 381 LRQI 384 (850)
Q Consensus 381 ~e~l 384 (850)
++.+
T Consensus 149 a~~~ 152 (161)
T 3p9v_A 149 LKKA 152 (161)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 4443
No 169
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=59.98 E-value=33 Score=27.72 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhc
Q 003071 107 EENDRLQKQVSQLVYENTFFRQQTQNAA 134 (850)
Q Consensus 107 ee~~~l~~~~~~L~~En~~Lk~el~~~~ 134 (850)
+..+.|+.++.+|..||..|++++..+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888889999999999988764
No 170
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=59.93 E-value=21 Score=32.98 Aligned_cols=136 Identities=11% Similarity=0.091 Sum_probs=74.5
Q ss_pred cceeEEeeChhhHHHHhcCchhhhhhCCcc---eEEeeccCCCcchHHHHHHHhhccccccCCceeeEEeeceeeCCCcE
Q 003071 222 RACGLVGLDPTRVAEILKDRPSWYRDCRSV---EVVNVLPTGSSGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSL 298 (850)
Q Consensus 222 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~---~~l~~~~~g~~GalqLm~aE~~v~SPLVp~Re~~fLRyckq~~~G~w 298 (850)
+.+..|...+..+-+.+.|.++|-+.+|.. ++++....| +|. -+.+++.+ -.-+.++-+..|++..-.+ .
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~~~~v~~~~~~~-g~~--~~~~~~~~--~~~~~~~~~~~~v~~~~~~--~ 77 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDG-AVS--TVDAEAQV--GFSFLREKFATRVRRDKDA--R 77 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEET-TEE--EEEEEEEC--STTSSCCEEEEEEEEETTT--C
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCCCcCeeEEEEecCCC-CCc--eEEEEEEE--EecceeEEEEEEEEEcCCC--c
Confidence 345677788999999999999999988755 455432211 111 02233333 2234566677788753333 2
Q ss_pred EEEEeecCCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCCCccccchhhhchhHHHHHHHHHHHH
Q 003071 299 VVCERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLIAQKTTMAAL 378 (850)
Q Consensus 299 aVvDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~~vh~lyRpl~~Sg~afgar~w~~aL 378 (850)
.|.-.++++ + ...+...++ +++.++| |+|++.-+.|.. ..++..+...-+.-.+++.+.++
T Consensus 78 ~i~~~~~~G----~----f~~~~g~w~------f~~~~~g-t~v~~~~~~~~~----~~l~~~l~~~~~~~~~~~~~~~f 138 (148)
T 1t17_A 78 SIDVSLLYG----P----FKRLNNGWR------FMPEGDA-TRVEFVIEFAFK----SALLDAMLAANVDRAAGKLIACF 138 (148)
T ss_dssp EEEEEESST----T----SSCEEEEEE------EEEETTE-EEEEEEEEECCS----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCC----C----hhccEEEEE------EEECCCC-eEEEEEEEEEEC----cHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333442 1 111122233 4567777 999999888875 22344444222222556666666
Q ss_pred -HHHhh
Q 003071 379 -RHLRQ 383 (850)
Q Consensus 379 -r~~e~ 383 (850)
+.++.
T Consensus 139 ~~r~~~ 144 (148)
T 1t17_A 139 EARAQQ 144 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 35554
No 171
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=59.50 E-value=5.3 Score=41.89 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=23.2
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 003071 91 LQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQN 132 (850)
Q Consensus 91 l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~ 132 (850)
+.++|++|++++..++++.. +.++|+.||++||+.|.-
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~----~~~~l~~En~rLr~lL~~ 61 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLES----EVADLKKENKDLKESLDI 61 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcC
Confidence 33455556555555554433 334588899999988763
No 172
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=58.54 E-value=22 Score=33.57 Aligned_cols=105 Identities=8% Similarity=0.025 Sum_probs=65.6
Q ss_pred HHHHHhhc-CCCeEeecCCCCCceeEcccHH---HHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCC
Q 003071 734 SILKTLWH-HSDAVLCCSLKALPVFTFANQA---GLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQS 809 (850)
Q Consensus 734 ~~~~~l~~-ap~avl~h~~~~dP~f~yaN~a---aL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~ 809 (850)
+.++++++ .|+.|+.-+. +=.++|.|++ |-++|..+ ++.++-+-.--.+ ....+...-+-++.+.|-... .
T Consensus 19 ~~l~~IL~~~~~gI~~vD~--~g~I~~~N~a~~~~~~i~g~~-~~~iGr~v~~~~~-~~~~~~v~~i~~~l~~g~~~~-~ 93 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNK--DDIFQYYNDSVPAAEMVFKRT-PSQVGRNVELCHP-PKVLDKVKKVFELLRNGQRDK-V 93 (151)
T ss_dssp HHHHHHHHHSSSEEEEEET--TSBEEEECCCSCGGGCSSCCC-GGGTTSBGGGSSC-HHHHHHHHHHHHHHHTTSBSE-E
T ss_pred HHHHHHHHhCCCceEEEcC--CCeEEEEeCCCchhhhhcCCC-HHHcCCCHHHhCC-HHHHHHHHHHHHHHHcCCccE-E
Confidence 45667774 7999988775 7799999999 99999944 7888876543332 222222222344455565332 2
Q ss_pred eeEEccC--CCcEEEeeeEEeEeecCCCceEEEEEeccc
Q 003071 810 GICLSSM--GRPISYERAVAWKVLNEEENAHCICFMFIN 846 (850)
Q Consensus 810 GvRiss~--Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~ 846 (850)
=+.+... |+.+.+ ...-|.|++|.+.|.-.+|.+
T Consensus 94 ~~~~~~~~~~~~v~v---~~~Pi~d~~G~~~G~vev~~D 129 (151)
T 2qkp_A 94 NMWFQSERLGKFVYV---TYAAVRDQAGDFQGVLEYVQD 129 (151)
T ss_dssp EEEEEETTTTEEEEE---EEEEEECTTCCEEEEEEEEEE
T ss_pred EEEEecCCCCeEEEE---EEEEEECCCCCEEEEEEEEEE
Confidence 2333323 554433 334556999999998888865
No 173
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=58.54 E-value=27 Score=28.03 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=26.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 97 KLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 97 ~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
.+++.+..+.+.|.+|..-+++-+.|...|++|++++
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555566666666666666777777888888888876
No 174
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=58.49 E-value=9.5 Score=39.10 Aligned_cols=58 Identities=17% Similarity=0.349 Sum_probs=39.2
Q ss_pred CCCCccccccCCCcceEEEEecCCCcCCcccccccCCCCCCCceEE-EEEeecccccCChHHHHHHHhh--hchhhccc
Q 003071 422 TDEGWSMLESDGIDDVTVHVNSSPSKMMGVQLSYVNGFPSMSNAVL-CAKASMLLQDVPPAILLRFLRE--HRSEWADS 497 (850)
Q Consensus 422 ~~~~W~~l~~~g~~dVrv~~r~~~~~~~~~~~~~~~~~~~p~g~Vl-~A~tS~wL~pvpp~~lf~FLRd--~R~eWd~l 497 (850)
...+|..... .++|+|..+...+ .|.++ .-++..-+.+++|+.||++|.| .|.+||..
T Consensus 45 ~~~~W~~~~~--~~gv~vy~~~~~~----------------~g~~~~~~K~~~~~~~~~~~~v~~~l~d~~~r~~Wd~~ 105 (255)
T 2e3n_A 45 GDANWQLVVE--EGEMKVYRREVEE----------------NGIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETT 105 (255)
T ss_dssp TCTTEEEEEE--ETTEEEEEECCEE----------------TTEECCCEEEEEEEETCCHHHHHHHHHCGGGHHHHCCS
T ss_pred CCCCcEEEEe--CCCEEEEEEEcCC----------------CCceeeeEEEEEEEcCCCHHHHHHHHhCcchHhhhhhh
Confidence 3468987753 4679998887541 12221 1233344546999999999997 89999964
No 175
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=57.67 E-value=27 Score=37.95 Aligned_cols=105 Identities=10% Similarity=0.029 Sum_probs=70.8
Q ss_pred HHHHHhh-cCCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccccCCCeeE
Q 003071 734 SILKTLW-HHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMCLQSGIC 812 (850)
Q Consensus 734 ~~~~~l~-~ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~~y~GvR 812 (850)
..++.++ +.|++|+.-+. +=+++|.|++ .++| ++-+++++-+..--.++.. ......+.++.+.|-.. ..-+.
T Consensus 239 ~~l~~IL~~l~dgIivvD~--~g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~~-~~~~~~l~~~l~~g~~~-~~~~~ 312 (369)
T 3cax_A 239 EELKAIFEALPVDVTFIDK--DDRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPKS-VYVVNKILKAFKEGRKK-EATFW 312 (369)
T ss_dssp HHHHHHHHHSSSEEEEECT--TSBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGGG-HHHHHHHHHHHHHTSCS-CEEEE
T ss_pred HHHHHHHHhCCCcEEEECC--CCcEEEEcCH-HHcc-CChHHHcCCcHHHHCChhh-HHHHHHHHHHHHcCCce-EEEEE
Confidence 4556677 47999998886 5699999999 9999 9999999987765444322 22223344455666432 22344
Q ss_pred EccCCCcEEEeeeEEeEeecCCCceEEEEEecccc
Q 003071 813 LSSMGRPISYERAVAWKVLNEEENAHCICFMFINW 847 (850)
Q Consensus 813 iss~Grrf~i~~a~vW~l~d~~g~~~gqAa~F~~W 847 (850)
+...|+.+.+. +--|.|++|.+.|...+|.+-
T Consensus 313 ~~~~g~~v~v~---~~PI~d~~G~~~G~v~v~~DI 344 (369)
T 3cax_A 313 LRLREKYVYIK---YVPLFNEKGEYIGTLEMTMDI 344 (369)
T ss_dssp EEETTEEEEEE---EEEEECTTSCEEEEEEEEEEC
T ss_pred EeeCCEEEEEE---EEEEECCCCCEEEEEEEEEcC
Confidence 55567655443 335679999999988888653
No 176
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=57.32 E-value=11 Score=33.83 Aligned_cols=64 Identities=23% Similarity=0.202 Sum_probs=31.7
Q ss_pred CCCcceEEeecccchhHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 003071 65 NIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQN 132 (850)
Q Consensus 65 gL~~rQVkvWFQNRRak~Krr~~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~ 132 (850)
||+..+|.-+=|-||+ -|.+--...++. +-..+...|..++..+..++++|+.||.+++.|++.
T Consensus 17 gls~eev~~lKq~RRt-lKNRgyAq~CR~---Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~ 80 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRT-LKNRGYAQSCRY---KRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDA 80 (90)
T ss_dssp TCCHHHHHHHHHHHHH-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh-hhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777766666554443 232222211211 112233445555555666666666666666666554
No 177
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=57.19 E-value=30 Score=26.79 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=13.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003071 98 LTAMNKLLMEENDRLQKQVSQLVYENTFFRQQ 129 (850)
Q Consensus 98 l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~e 129 (850)
++..|-.+..+-..+++-...|+.|.++|..|
T Consensus 15 lkkdnlqlerdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 15 LKKDNLQLERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444455555554444
No 178
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=56.10 E-value=39 Score=29.60 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 85 RKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 85 r~~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
+.+...++.+|..+..+++.++...+.+..+.++|+.|....++.+..+
T Consensus 26 qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466778888889999999988888888888888999888888777654
No 179
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=54.27 E-value=20 Score=28.94 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=20.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 003071 100 AMNKLLMEENDRLQKQVSQLVYENTFFRQQTQN 132 (850)
Q Consensus 100 a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~ 132 (850)
.+.+.|+.++..|+.++..|..+++.|+.++.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666666666666666677777666653
No 180
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=54.17 E-value=60 Score=28.16 Aligned_cols=36 Identities=8% Similarity=-0.047 Sum_probs=18.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhcc
Q 003071 100 AMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNAAT 135 (850)
Q Consensus 100 a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~~~ 135 (850)
.....+......|+.+-.+|+.+...|+.|+..+..
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555555556666555533
No 181
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=53.14 E-value=11 Score=30.54 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHh
Q 003071 110 DRLQKQVSQLVYENTFFRQQT 130 (850)
Q Consensus 110 ~~l~~~~~~L~~En~~Lk~el 130 (850)
..|+.+-..|+.++..|++++
T Consensus 32 ~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 32 AVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555555555444
No 182
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=53.03 E-value=34 Score=26.40 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=26.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 003071 97 KLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (850)
Q Consensus 97 ~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~ 131 (850)
.|...-+.+...+.+|+..+.-|..||+.|||-+.
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 34455566666777788888999999999998663
No 183
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=52.91 E-value=86 Score=29.94 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=63.1
Q ss_pred cceeEEeeChhhHHHHhcCchhhhhhCCcceEEeeccCCCcchHHHHHHHhh-ccccccCCceeeEEeeceeeCCCcEEE
Q 003071 222 RACGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPTGSSGTIELLYMQLY-APTTLAPARDFWLLRYTSVLEDGSLVV 300 (850)
Q Consensus 222 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~g~~GalqLm~aE~~-v~SPLVp~Re~~fLRyckq~~~G~waV 300 (850)
..+.+|.-.+.++-+++-|.++|-+.+|-..-..+++.+.++ +.+.+. ..+.- -.++-++.|+... .++.-+
T Consensus 6 ~~si~I~a~~~~V~~lV~Dve~yP~~~p~~~~~~vl~~~~~~----~~~rl~~~~~~~-G~~~~~ts~~~~d-~~~~~I- 78 (159)
T 3tl1_A 6 DNEITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDK----VTFRLTMHPDAD-GKVWSWVSERVAD-PVTRTV- 78 (159)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEEECSSE----EEEEEEECCCTT-SCCCEEEEEEEEE-TTTTEE-
T ss_pred EEEEEecCCHHHHHHHHHhHHHhhhhhhCceEEEEEecCCCE----EEEEEEEEeccC-ceEEEEEEEEEEc-CCCCEE-
Confidence 456677788999999999999999999976555555433222 112221 01111 1344445566432 333322
Q ss_pred EEeecCCCCCCCCCCCCCCccceeecCcceEEeeCCCCceEEEEEEeeeccCC
Q 003071 301 CERSLNNTQNGPSMPQAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPW 353 (850)
Q Consensus 301 vDvSld~~~~~~~~~~~~~~~r~rrlPSGclIq~~~nG~skVtwVeH~e~d~~ 353 (850)
+..+. .++| |. .+=...-+.+.++ +|+|+|.-+.+..+.
T Consensus 79 -~~~~~--~~gP-------f~---~l~g~W~f~p~~~-gt~V~~~~df~~~~~ 117 (159)
T 3tl1_A 79 -RAQRV--ETGP-------FQ---YMNIVWEYAETAE-GTVMRWTQDFAMKPD 117 (159)
T ss_dssp -EEEES--SCTT-------EE---EEEEEEEEEEETT-EEEEEEEEEEEECTT
T ss_pred -EEEEc--cCCC-------hh---hccCEEEEEECCC-CEEEEEEEEEEecCC
Confidence 22211 1111 21 2334455677777 599999999999765
No 184
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=51.87 E-value=38 Score=32.34 Aligned_cols=38 Identities=11% Similarity=0.041 Sum_probs=18.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 96 RKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 96 ~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
..++.+....+.+++.+.++..+|+.++..|+.++.++
T Consensus 92 ~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 92 YDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555555555555555555443
No 185
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=51.55 E-value=63 Score=24.99 Aligned_cols=40 Identities=18% Similarity=0.114 Sum_probs=32.3
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhc
Q 003071 95 NRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNAA 134 (850)
Q Consensus 95 n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~~ 134 (850)
|..++..-..+++++-+++..+|.|..-.+.|++|+.|+-
T Consensus 5 naylrkkiarlkkdnlqlerdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Confidence 5566677778888888888888888888888999988874
No 186
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=51.54 E-value=52 Score=35.89 Aligned_cols=94 Identities=16% Similarity=0.118 Sum_probs=63.1
Q ss_pred eEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhcc-ccCCCeeE-EccCCCcEEE
Q 003071 745 AVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGF-MCLQSGIC-LSSMGRPISY 822 (850)
Q Consensus 745 avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~-~~~y~GvR-iss~Grrf~i 822 (850)
.+.-|+ .|=.|+|.|.++.++++|+-+||++.++---.-|.++..-...+.++++.|- .... =.| ..+.|.-.|+
T Consensus 280 fi~~~~--~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~-eyR~~~kdG~~vWv 356 (387)
T 4f3l_B 280 YVSRHA--IDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTN-CYKFKIKDGSFITL 356 (387)
T ss_dssp EEEEEC--TTSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECC-CEEEECTTSCEEEE
T ss_pred EEEEEC--CCCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeE-EEEEEccCCCEEEE
Confidence 344444 3678999999999999999999999877655567776666666666665432 1111 123 3788998888
Q ss_pred eeeEEeEe-ecC-CCceEEEEEe
Q 003071 823 ERAVAWKV-LNE-EENAHCICFM 843 (850)
Q Consensus 823 ~~a~vW~l-~d~-~g~~~gqAa~ 843 (850)
+- -|++ .|. +|...+.-.+
T Consensus 357 ~~--~~~~~~~~~~g~~~~ivg~ 377 (387)
T 4f3l_B 357 RS--RWFSFMNPWTKEVEYIVST 377 (387)
T ss_dssp EE--EEEEEEETTTTEEEEEEEE
T ss_pred EE--EEEEEECCCCCCEEEEEEE
Confidence 63 3444 455 6776665444
No 187
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=51.50 E-value=44 Score=30.40 Aligned_cols=21 Identities=24% Similarity=0.139 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhHHHHHHhhhh
Q 003071 113 QKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 113 ~~~~~~L~~En~~Lk~el~~~ 133 (850)
++++.+|+.|+.+||+.+..+
T Consensus 74 ~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 74 REDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666555443
No 188
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=50.98 E-value=21 Score=26.58 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 003071 101 MNKLLMEENDRLQKQVSQLVYENTFFR 127 (850)
Q Consensus 101 ~n~~l~ee~~~l~~~~~~L~~En~~Lk 127 (850)
+|+.+..+.+.-+.++.+|+.||..|+
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 455555555555556666666666554
No 189
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=50.67 E-value=16 Score=31.35 Aligned_cols=31 Identities=29% Similarity=0.311 Sum_probs=25.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 003071 100 AMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (850)
Q Consensus 100 a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el 130 (850)
.+-+.|++.+.+|+.+..+|..||..||+-.
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567788888899999999999999998753
No 190
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=49.20 E-value=25 Score=26.02 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 003071 105 LMEENDRLQKQVSQLVYENTFFRQQTQN 132 (850)
Q Consensus 105 l~ee~~~l~~~~~~L~~En~~Lk~el~~ 132 (850)
++..+...++++.+|+.+|+.|.+|+..
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 4556666777778888888888888743
No 191
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=47.43 E-value=2.6 Score=36.92 Aligned_cols=82 Identities=21% Similarity=0.251 Sum_probs=46.6
Q ss_pred ccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHHHHHHHHHhHHHHHhhHHHHH
Q 003071 28 VRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLME 107 (850)
Q Consensus 28 ~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~~~~l~~~n~~l~a~n~~l~e 107 (850)
.+||+++....-..+... ......++|+++ |+++..|..|...-+..- .. . +....
T Consensus 4 ~~ys~e~k~~~v~~~~~~---~g~s~~~ia~~~----gIs~~tl~rW~~~~~~~g----~~----~----~~~~~----- 59 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENS---DGASLQQIANDL----GINRVTLKNWIIKYGSNH----NV----Q----GTTPS----- 59 (97)
T ss_dssp CCCCHHHHHHHHHHHTTG---GGSCHHHHHHHH----TSCHHHHHHHHHHHCCCS----TT----C----SCCCC-----
T ss_pred CCCCHHHHHHHHHHHHHc---CCChHHHHHHHH----CcCHHHHHHHHHHHhhcC----cc----c----CCCCC-----
Confidence 578898876665555322 012467899999 999999988863211100 00 0 00000
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 108 ENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 108 e~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
.....+.++.+|+.||++|+.|++-+
T Consensus 60 ~~~~~~~ei~~L~~e~~~L~~e~~~L 85 (97)
T 2jn6_A 60 AAVSEAEQIRQLKKENALQRARTRHP 85 (97)
T ss_dssp HHHHTHHHHHHHHHCGGGGGGTTSCC
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 00112345567888888888887765
No 192
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=46.14 E-value=1.3e+02 Score=29.05 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=29.7
Q ss_pred cceeEEeeChhhHHHHhcCchhhhhhCCcceEEeeccC
Q 003071 222 RACGLVGLDPTRVAEILKDRPSWYRDCRSVEVVNVLPT 259 (850)
Q Consensus 222 R~~glV~m~~~~LVe~lmD~~~W~~~f~~~~~l~~~~~ 259 (850)
..+.+|.-.+.++-+.+.|.++|-+.+|.+.-..+...
T Consensus 6 ~~si~I~a~~~~v~~lv~Dv~~~p~w~p~~~~~~~~~~ 43 (169)
T 3tvq_A 6 DNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQ 43 (169)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCTTEEEEEEEEE
T ss_pred EEEEEecCCHHHHHHHHHhhhHHHHHHhheeEEEEEec
Confidence 34566777888999999999999999997755555443
No 193
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=45.69 E-value=15 Score=26.92 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhcccc
Q 003071 110 DRLQKQVSQLVYENTFFRQQTQNAATLA 137 (850)
Q Consensus 110 ~~l~~~~~~L~~En~~Lk~el~~~~~~~ 137 (850)
.+|+..+.+|..+|..|++|..|+.++.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3567777888888888888888876543
No 194
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=45.14 E-value=67 Score=30.00 Aligned_cols=97 Identities=6% Similarity=-0.049 Sum_probs=71.3
Q ss_pred hhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCcc-ccccCccchhHHhhhhHHHHHhccccCCCeeEEccC
Q 003071 739 LWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITL-EKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSM 816 (850)
Q Consensus 739 l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lps-r~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~ 816 (850)
+++ .|+.|+.=+ .|=...|-|+++.++.+++-++.++-+. +..++-....+=+..+.+..++|-+..-.+-.++..
T Consensus 22 ~ld~l~~Gii~lD--~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~l~~~~~~v~~~~ 99 (125)
T 1nwz_A 22 QLDGLAFGAIQLD--GDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYTFDYQ 99 (125)
T ss_dssp HHTTCSSEEEEEE--TTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEEECTT
T ss_pred HHhccCceEEEEC--CCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCceeEEEEEEEcCC
Confidence 454 688887655 4678999999999999999999999887 445554555554444556566998887778888999
Q ss_pred CCcEEEeeeEEeEeecCCCceEEE
Q 003071 817 GRPISYERAVAWKVLNEEENAHCI 840 (850)
Q Consensus 817 Grrf~i~~a~vW~l~d~~g~~~gq 840 (850)
|+++.++=.. +.+++|...|.
T Consensus 100 ~~p~~v~i~l---~~~~~~~~~~i 120 (125)
T 1nwz_A 100 MTPTKVKVHM---KKALSGDSYWV 120 (125)
T ss_dssp SCCEEEEEEE---EECSSSSEEEE
T ss_pred CCEEEEEEEE---EEcCCCCEEEE
Confidence 9988875433 34666766554
No 195
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=43.29 E-value=53 Score=37.43 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhcccccCC
Q 003071 104 LLMEENDRLQKQVSQLVYENTFFRQQTQNAATLATTD 140 (850)
Q Consensus 104 ~l~ee~~~l~~~~~~L~~En~~Lk~el~~~~~~~~~~ 140 (850)
.+++..+..+++..+++.|++.+++|+.++-.....+
T Consensus 548 ~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 548 ALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3333334445556677777777777777664443333
No 196
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=42.48 E-value=26 Score=36.80 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=21.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 99 TAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 99 ~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
+.++..+.+.+++|..++++++.|..+||+|++++
T Consensus 60 ~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 60 EARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444445555555666777777777777776
No 197
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=42.48 E-value=76 Score=29.89 Aligned_cols=97 Identities=6% Similarity=-0.013 Sum_probs=71.0
Q ss_pred hhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCcc-ccccCccchhHHhhhhHHHHHhccccCCCeeEEccC
Q 003071 739 LWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITL-EKIFDDSGRKTLCSEFPQIMQQGFMCLQSGICLSSM 816 (850)
Q Consensus 739 l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lps-r~sae~~~r~er~~lL~~v~~qG~~~~y~GvRiss~ 816 (850)
+++ .|+.|+.=+ .+=...|-|+++.++.+++-+++++-+. +..+.-....+=+..+.+..++|-+..-.+-.++..
T Consensus 27 ~ld~l~~GiivlD--~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~l~~~~~yv~~~~ 104 (129)
T 1mzu_A 27 EFDALPVGAIQVD--GSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFVFDFQ 104 (129)
T ss_dssp TGGGCSSEEEEEE--TTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEEEECS
T ss_pred HHhccCceEEEEC--CCCeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCceeEEEEEEEcCC
Confidence 454 788887655 4678999999999999999999999887 445554555554445566666999887777788999
Q ss_pred CCcEEEeeeEEeEeecCCCceEEE
Q 003071 817 GRPISYERAVAWKVLNEEENAHCI 840 (850)
Q Consensus 817 Grrf~i~~a~vW~l~d~~g~~~gq 840 (850)
|+++.++=.. +.+++|...|.
T Consensus 105 ~~p~~v~i~l---~~~~~~~~~~i 125 (129)
T 1mzu_A 105 MAPVRVQIRM---QNAGVPDRYWI 125 (129)
T ss_dssp SCEEEEEEEE---EECSSTTEEEE
T ss_pred CCEEEEEEEE---EEcCCCCEEEE
Confidence 9988774333 34666666553
No 198
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=40.59 E-value=1.2e+02 Score=26.94 Aligned_cols=46 Identities=20% Similarity=0.316 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 81 REKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 81 k~Krr~~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
+.|+..+...++.++..+..+-+. +..+..++..|...+|+.++.+
T Consensus 43 R~Kr~~q~~~LE~e~~~L~~e~~~-------L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 43 RYKRVQQKHHLENEKTQLIQQVEQ-------LKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 344544445555555554444444 4444455555555666666543
No 199
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=37.45 E-value=33 Score=27.47 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=14.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003071 97 KLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQ 129 (850)
Q Consensus 97 ~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~e 129 (850)
.|+.+|.-++.|.+.-..++.+|..|--.+|+-
T Consensus 14 ~Lk~ENshLrrEL~dNS~~lskLE~ets~mKev 46 (54)
T 1deb_A 14 ALKMENSNLRQELEDNSNHLTKLETEASNMKEV 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHH
Confidence 344444444444444444444444444444443
No 200
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=37.33 E-value=1.1e+02 Score=29.26 Aligned_cols=44 Identities=7% Similarity=-0.020 Sum_probs=22.5
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 003071 88 ASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQ 131 (850)
Q Consensus 88 ~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~ 131 (850)
...++.+...++..++.+.+++.+++++...|+.++.+|..++.
T Consensus 91 ~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 91 IYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555555555555555555555554443
No 201
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=36.16 E-value=43 Score=27.23 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhccc
Q 003071 103 KLLMEENDRLQKQVSQLVYENTFFRQQTQNAATL 136 (850)
Q Consensus 103 ~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~~~~ 136 (850)
..+++.+.+|-.++++|...+....||++|+..+
T Consensus 14 ~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~L 47 (58)
T 3a2a_A 14 LRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKL 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666677777777777777776544
No 202
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=36.12 E-value=42 Score=28.90 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 103 KLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 103 ~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
+.|++++..++.+..+|+.+|..|++++..+
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666677778888888888888888765
No 203
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=35.32 E-value=73 Score=28.02 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 003071 101 MNKLLMEENDRLQKQVSQLVYENTFFRQ 128 (850)
Q Consensus 101 ~n~~l~ee~~~l~~~~~~L~~En~~Lk~ 128 (850)
+|+.|.+..+.++.+...|+.||..|+.
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555544555555555443
No 204
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=35.07 E-value=24 Score=32.56 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhh
Q 003071 109 NDRLQKQVSQLVYENTFFRQQTQN 132 (850)
Q Consensus 109 ~~~l~~~~~~L~~En~~Lk~el~~ 132 (850)
.++|..++++|+.||..||+++.+
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356888999999999999999965
No 205
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=34.54 E-value=32 Score=36.12 Aligned_cols=39 Identities=31% Similarity=0.215 Sum_probs=32.4
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003071 91 LQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQ 129 (850)
Q Consensus 91 l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~e 129 (850)
++.++..+.+.|+.|+++.+++.+|+.+|+.|+.+|++-
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345566788888889999999999999999999988864
No 206
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=33.77 E-value=32 Score=25.34 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhccc
Q 003071 110 DRLQKQVSQLVYENTFFRQQTQNAATL 136 (850)
Q Consensus 110 ~~l~~~~~~L~~En~~Lk~el~~~~~~ 136 (850)
.+|+..+.+|..+|..|+.|..|+.++
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~l 30 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 445566666667777777776666443
No 207
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=33.63 E-value=1.4e+02 Score=24.67 Aligned_cols=19 Identities=16% Similarity=0.093 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhHHHHHHh
Q 003071 112 LQKQVSQLVYENTFFRQQT 130 (850)
Q Consensus 112 l~~~~~~L~~En~~Lk~el 130 (850)
|+.+-..|..|.+.|++++
T Consensus 42 L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 42 LLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444555555554
No 208
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=32.85 E-value=1.4e+02 Score=25.38 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhh
Q 003071 111 RLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 111 ~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
.++...+.|..||..|++++..+
T Consensus 40 ~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 40 TLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445555555554443
No 209
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=31.91 E-value=1.6e+02 Score=26.60 Aligned_cols=43 Identities=40% Similarity=0.448 Sum_probs=25.3
Q ss_pred HHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003071 87 EASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQ 129 (850)
Q Consensus 87 ~~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~e 129 (850)
++.+++.......+.-..|..+.++|..+-+.|+.||+..+++
T Consensus 52 e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 52 ENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3444444444445555566666666666666677777666655
No 210
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=31.08 E-value=1.4e+02 Score=31.93 Aligned_cols=79 Identities=11% Similarity=0.138 Sum_probs=56.3
Q ss_pred CCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhcccc--CCCeeE-EccCCCcEEEeeeEEeE
Q 003071 753 ALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFMC--LQSGIC-LSSMGRPISYERAVAWK 829 (850)
Q Consensus 753 ~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~~--~y~GvR-iss~Grrf~i~~a~vW~ 829 (850)
.|=.|+|.|.++..+++|+-+||++.+..--.-|.++..-.+.+.++++.|-.. ...=.| ..+.|.-.|++ +-|+
T Consensus 182 ~dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~vwve--t~~~ 259 (317)
T 4dj3_A 182 PGCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEYVILD--SSWS 259 (317)
T ss_dssp TTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCEEEEE--EEEE
T ss_pred CCCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCEEEEE--EEEE
Confidence 477899999999999999999999988765556777777777777887764321 111233 36778877776 3455
Q ss_pred e-ecC
Q 003071 830 V-LNE 833 (850)
Q Consensus 830 l-~d~ 833 (850)
+ +|.
T Consensus 260 ~~~np 264 (317)
T 4dj3_A 260 SFVNP 264 (317)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 4 444
No 211
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=30.34 E-value=1e+02 Score=27.16 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=17.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003071 100 AMNKLLMEENDRLQKQVSQLVYENTFFRQQ 129 (850)
Q Consensus 100 a~n~~l~ee~~~l~~~~~~L~~En~~Lk~e 129 (850)
.+|+.|.++.+.++.++..|+.||..|++=
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555556666666666665543
No 212
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=30.26 E-value=58 Score=28.17 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q 003071 103 KLLMEENDRLQKQVSQLVYENTFFRQQTQN 132 (850)
Q Consensus 103 ~~l~ee~~~l~~~~~~L~~En~~Lk~el~~ 132 (850)
..|+++..+++.+..+|+.|+..|+++|++
T Consensus 50 ~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 50 KKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555566666677778888888877764
No 213
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=29.77 E-value=1.7e+02 Score=23.39 Aligned_cols=36 Identities=31% Similarity=0.218 Sum_probs=24.0
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHH
Q 003071 91 LQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFF 126 (850)
Q Consensus 91 l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~L 126 (850)
++..+..+.+.|..|.+...+-..++..|+.|..+|
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566677777777777766666666677666655
No 214
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=29.51 E-value=36 Score=29.14 Aligned_cols=37 Identities=32% Similarity=0.519 Sum_probs=25.2
Q ss_pred HHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHHHH
Q 003071 35 VEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS 89 (850)
Q Consensus 35 l~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~~~ 89 (850)
+....-.|+.+|||++.--.+ |+ .|||-+|++++...
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-aR-----------------RNRRRRWR~RQrQI 54 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-AR-----------------RNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-HH-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-HH-----------------HHHHHHHHHHHHHH
Confidence 445566799999998653222 32 38999999877553
No 215
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=28.89 E-value=59 Score=34.69 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=58.4
Q ss_pred eEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHhccc-cCCCeeEE-ccCCCcEEE
Q 003071 745 AVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQGFM-CLQSGICL-SSMGRPISY 822 (850)
Q Consensus 745 avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~qG~~-~~y~GvRi-ss~Grrf~i 822 (850)
.+.-|+ .|=.|+|.|.++..+++|+-+||++.+.---.-|.++..-.+.+.++++.|-. ....=.|+ .+.|.-.|+
T Consensus 167 Fitrh~--~dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwv 244 (309)
T 3gdi_A 167 FTTTHT--PNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYITL 244 (309)
T ss_dssp EEEEEC--TTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEEE
T ss_pred EEEEec--CCCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEEE
Confidence 445555 47889999999999999999999998765555677777777777888775432 11012354 778887777
Q ss_pred eeeEEeEee
Q 003071 823 ERAVAWKVL 831 (850)
Q Consensus 823 ~~a~vW~l~ 831 (850)
+ +-|.++
T Consensus 245 e--t~~~~~ 251 (309)
T 3gdi_A 245 D--TSWSSF 251 (309)
T ss_dssp E--EEEEEE
T ss_pred E--EEEEEE
Confidence 5 355543
No 216
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=28.72 E-value=1.9e+02 Score=24.86 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhcc
Q 003071 108 ENDRLQKQVSQLVYENTFFRQQTQNAAT 135 (850)
Q Consensus 108 e~~~l~~~~~~L~~En~~Lk~el~~~~~ 135 (850)
.++.+++++++...+...|+.||++..+
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456788888889999999999998744
No 217
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.71 E-value=1e+02 Score=34.34 Aligned_cols=30 Identities=23% Similarity=0.241 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 104 LLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 104 ~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
.++.+.+..+.+.++|+.||++++.+++.+
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 432 NAIRDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 344455566777788888888888887765
No 218
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=28.58 E-value=57 Score=23.86 Aligned_cols=26 Identities=4% Similarity=0.111 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhhhhccc
Q 003071 111 RLQKQVSQLVYENTFFRQQTQNAATL 136 (850)
Q Consensus 111 ~l~~~~~~L~~En~~Lk~el~~~~~~ 136 (850)
+++..+.+|..+|..|+.|..|+.++
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45555666666666666666666443
No 219
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=27.97 E-value=69 Score=34.42 Aligned_cols=64 Identities=9% Similarity=0.111 Sum_probs=46.9
Q ss_pred hHHHHHhhc-CCCeEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHH
Q 003071 733 ESILKTLWH-HSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQ 798 (850)
Q Consensus 733 ~~~~~~l~~-ap~avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~ 798 (850)
++..+.+.. .+..|+.-+ +|-.|.|.|.+..++++|+-+||++.+..--..|.++++-...|..
T Consensus 85 ~~~~~~~l~a~~~~i~v~~--~~G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~~ 149 (361)
T 4f3l_A 85 EEFTQLMLEALDGFFLAIM--TDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILST 149 (361)
T ss_dssp HHHHHHHHHHTTEEEEEEE--TTSBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhcCceEEEEc--CCccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhcc
Confidence 444455554 455555444 5689999999999999999999999987666677777766655554
No 220
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=27.57 E-value=2.3e+02 Score=26.42 Aligned_cols=11 Identities=27% Similarity=0.135 Sum_probs=4.0
Q ss_pred HHHHHhHHHHH
Q 003071 118 QLVYENTFFRQ 128 (850)
Q Consensus 118 ~L~~En~~Lk~ 128 (850)
+|+-|+..|++
T Consensus 75 eLqgEI~~Lnq 85 (121)
T 3mq7_A 75 ELEGEITTLNH 85 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 221
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=27.10 E-value=2.2e+02 Score=30.37 Aligned_cols=77 Identities=13% Similarity=0.087 Sum_probs=53.8
Q ss_pred eEeecCCCCCceeEcccHHHHHhhccCHHHhhcCccccccCccchhHHhhhhHHHHHh-ccccCCCeeEE-ccCCCcEEE
Q 003071 745 AVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDSGRKTLCSEFPQIMQQ-GFMCLQSGICL-SSMGRPISY 822 (850)
Q Consensus 745 avl~h~~~~dP~f~yaN~aaL~l~e~~w~~l~~lpsr~sae~~~r~er~~lL~~v~~q-G~~~~y~GvRi-ss~Grrf~i 822 (850)
.+.-|+ .|=.|+|.|.++..+++|+-+||++.+.---.-|.++..-.+.+.++++. |-.....=.|+ .+.|.-.|+
T Consensus 178 Fitrh~--~dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwv 255 (320)
T 4dj2_A 178 FTTRHT--PSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVTM 255 (320)
T ss_dssp EEEEEC--TTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEEEE
T ss_pred EEEEec--CCceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEEEE
Confidence 344454 47789999999999999999999998765555677777767777777763 43221112233 677877777
Q ss_pred e
Q 003071 823 E 823 (850)
Q Consensus 823 ~ 823 (850)
+
T Consensus 256 e 256 (320)
T 4dj2_A 256 D 256 (320)
T ss_dssp E
T ss_pred E
Confidence 5
No 222
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=26.98 E-value=87 Score=23.36 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 107 EENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 107 ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
.|+++|.+++.+-..|.++||+|...+
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL 33 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKEL 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 477888888888888888888877655
No 223
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=26.59 E-value=2.5e+02 Score=25.95 Aligned_cols=46 Identities=11% Similarity=0.025 Sum_probs=32.2
Q ss_pred HHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 88 ASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 88 ~~~l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
-..+++.....+.+...-+.+-+++..+.++|..+++.|+.+++++
T Consensus 64 I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 64 VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 3445555555556666666666778888888999999998888764
No 224
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=26.58 E-value=50 Score=24.29 Aligned_cols=27 Identities=4% Similarity=0.123 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhccc
Q 003071 110 DRLQKQVSQLVYENTFFRQQTQNAATL 136 (850)
Q Consensus 110 ~~l~~~~~~L~~En~~Lk~el~~~~~~ 136 (850)
.+++..+.+|..+|..|..|..|+.++
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 345555666666666666666665443
No 225
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=26.57 E-value=20 Score=28.47 Aligned_cols=45 Identities=22% Similarity=0.328 Sum_probs=31.9
Q ss_pred cccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecc
Q 003071 27 YVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQ 76 (850)
Q Consensus 27 R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQ 76 (850)
+..||++........+... .+......++|+++ |+++.+|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~----gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKY----NIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHT----TSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHH----CcCHHHHHHHHH
Confidence 4579998887775555433 22122367899999 999999999964
No 226
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=26.45 E-value=2.5e+02 Score=22.49 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 110 DRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 110 ~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
+++-+|+..|+.||..||+||+--
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dN 29 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDN 29 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhh
Confidence 345556666777777777776643
No 227
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=26.19 E-value=24 Score=32.70 Aligned_cols=37 Identities=32% Similarity=0.519 Sum_probs=24.5
Q ss_pred HHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccchhHHHHHHHHH
Q 003071 35 VEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAS 89 (850)
Q Consensus 35 l~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRRak~Krr~~~~ 89 (850)
+..+.-.|+.+|||+..--.+ |+ .|||-|||+++...
T Consensus 15 vRiIkiLyQSNPyP~peGTRq-aR-----------------RNRRRRWR~RQrQI 51 (115)
T 2x7l_M 15 VRLIKFLYQSNPPPNPEGTRQ-AR-----------------RNRRRRWRERQRQI 51 (115)
T ss_dssp HHHHHHHHHSSCCCCCCCCTT-TH-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchh-hh-----------------HhHHHHHHHHHHHH
Confidence 345566699999998752111 11 48999999877653
No 228
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=26.06 E-value=2e+02 Score=25.33 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhc
Q 003071 108 ENDRLQKQVSQLVYENTFFRQQTQNAA 134 (850)
Q Consensus 108 e~~~l~~~~~~L~~En~~Lk~el~~~~ 134 (850)
||++|.+++.+++.|.+.||+++.++.
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666666666666665553
No 229
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.04 E-value=78 Score=27.77 Aligned_cols=31 Identities=10% Similarity=0.118 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 103 KLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 103 ~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
+.|.++...+..+..+|+.+|..|+++++.+
T Consensus 55 ~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555666666777888888888888766
No 230
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=25.88 E-value=51 Score=24.30 Aligned_cols=27 Identities=4% Similarity=0.236 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhccc
Q 003071 110 DRLQKQVSQLVYENTFFRQQTQNAATL 136 (850)
Q Consensus 110 ~~l~~~~~~L~~En~~Lk~el~~~~~~ 136 (850)
.+++..+.+|..+|..|..|..|+..+
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 345666666777777777777766443
No 231
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=25.55 E-value=44 Score=22.95 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=9.1
Q ss_pred HHHHHhHHHHHHhhh
Q 003071 118 QLVYENTFFRQQTQN 132 (850)
Q Consensus 118 ~L~~En~~Lk~el~~ 132 (850)
+|+..|++||+|+..
T Consensus 4 rlkqknarlkqeiaa 18 (28)
T 3ra3_B 4 RLKQKNARLKQEIAA 18 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHH
Confidence 455666666666643
No 232
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=25.38 E-value=2.5e+02 Score=24.70 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhccc
Q 003071 107 EENDRLQKQVSQLVYENTFFRQQTQNAATL 136 (850)
Q Consensus 107 ee~~~l~~~~~~L~~En~~Lk~el~~~~~~ 136 (850)
++|+.|.+++.+|..|++.||++++.+..+
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777888888888777766443
No 233
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=24.62 E-value=1.8e+02 Score=25.35 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=22.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 100 AMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 100 a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
.+|+.|.++.+.++.++..|+.||..|++-++.+
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666676666777777777777766655443
No 234
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=24.33 E-value=59 Score=23.98 Aligned_cols=27 Identities=4% Similarity=0.144 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhhhccc
Q 003071 110 DRLQKQVSQLVYENTFFRQQTQNAATL 136 (850)
Q Consensus 110 ~~l~~~~~~L~~En~~Lk~el~~~~~~ 136 (850)
.+++..+.+|..+|..|.+|..|+..+
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 346666777777777777777776544
No 235
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.72 E-value=2.8e+02 Score=25.88 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=13.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 003071 98 LTAMNKLLMEENDRLQKQVSQLVYENTFFRQQ 129 (850)
Q Consensus 98 l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~e 129 (850)
|+.+.+.+.+.....+.++.+||.+|..|+..
T Consensus 76 LqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 76 LEGEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 33333333333333344444444444444433
No 236
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=23.45 E-value=16 Score=33.68 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=26.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhc
Q 003071 100 AMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNAA 134 (850)
Q Consensus 100 a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~~ 134 (850)
.+.+.|..++..++.++.+|..||..|+.|++.+.
T Consensus 58 ~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk 92 (107)
T 3a5t_A 58 TQKEELEKQKAELQQEVEKLASENASMKLELDALR 92 (107)
T ss_dssp HHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666667777778888999999999988763
No 237
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=22.83 E-value=2.4e+02 Score=26.06 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhHHHHHHh
Q 003071 111 RLQKQVSQLVYENTFFRQQT 130 (850)
Q Consensus 111 ~l~~~~~~L~~En~~Lk~el 130 (850)
.|++++.+|+.+|..|+..+
T Consensus 39 ~Lq~El~~lr~~~~~l~~~i 58 (111)
T 2v66_B 39 VLEDDLSQTRAIKEQLHKYV 58 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666655433
No 238
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=22.26 E-value=2.7e+02 Score=21.33 Aligned_cols=40 Identities=20% Similarity=0.166 Sum_probs=17.4
Q ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 003071 91 LQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRQQT 130 (850)
Q Consensus 91 l~~~n~~l~a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el 130 (850)
++.+-..+..+|+.+++.+-.-..-..-|..|.+.||..+
T Consensus 8 lenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 8 LENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555555443222222223444555555544
No 239
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=21.32 E-value=1.3e+02 Score=28.48 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=24.1
Q ss_pred CCcccCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecc
Q 003071 25 GKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQ 76 (850)
Q Consensus 25 r~R~r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQ 76 (850)
..+..|+.+++..|.. ... .+.+ |++-.+|+-.+.
T Consensus 50 ~g~R~Y~~~dl~~l~~------------I~~-lr~~----G~sL~eIk~~l~ 84 (148)
T 3gpv_A 50 KGDRIFNEEALKYLEM------------ILC-LKNT----GMPIQKIKQFID 84 (148)
T ss_dssp TCCEEBCHHHHHHHHH------------HHH-HHTT----TCCHHHHHHHHH
T ss_pred CCCeecCHHHHHHHHH------------HHH-HHHc----CCCHHHHHHHHH
Confidence 4567899999988853 233 3667 888777766664
No 240
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=20.54 E-value=1.2e+02 Score=24.42 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=10.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Q 003071 96 RKLTAMNKLLMEENDRLQKQVSQLV 120 (850)
Q Consensus 96 ~~l~a~n~~l~ee~~~l~~~~~~L~ 120 (850)
+.|+.+|..++.....|..+.++|+
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444333
No 241
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.47 E-value=1.8e+02 Score=33.08 Aligned_cols=8 Identities=38% Similarity=0.438 Sum_probs=3.1
Q ss_pred HHHHHHhh
Q 003071 124 TFFRQQTQ 131 (850)
Q Consensus 124 ~~Lk~el~ 131 (850)
..+++|.+
T Consensus 561 ~~l~~e~~ 568 (597)
T 3oja_B 561 AELRQETS 568 (597)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444433
No 242
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.28 E-value=2.5e+02 Score=28.46 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=23.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhh
Q 003071 100 AMNKLLMEENDRLQKQVSQLVYENTFFRQQTQNA 133 (850)
Q Consensus 100 a~n~~l~ee~~~l~~~~~~L~~En~~Lk~el~~~ 133 (850)
.+|+.|.++++.++.++..|+.||..|++=.+.+
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~ 148 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHV 148 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777777777544443
No 243
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=20.20 E-value=25 Score=26.00 Aligned_cols=42 Identities=21% Similarity=0.239 Sum_probs=30.2
Q ss_pred cCCHHHHHHHHHhHhcCCCCCHHHHHHHHHhcCccCCCCcceEEeecccch
Q 003071 29 RYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRR 79 (850)
Q Consensus 29 r~T~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L~~~~gL~~rQVkvWFQNRR 79 (850)
.+++++...+...+... ....++|+.+ |++...|.-|+....
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~l----gvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIF----GIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTT----SCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHH----CCCHHHHHHHHHHcc
Confidence 46677766666666543 2356889999 999999999986544
Done!