Query 003072
Match_columns 850
No_of_seqs 227 out of 1150
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 16:28:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2099 Glycogen phosphorylase 100.0 5E-263 1E-267 2129.5 49.3 738 1-850 88-835 (843)
2 TIGR02093 P_ylase glycogen/sta 100.0 3E-248 6E-253 2114.7 64.2 730 1-844 57-794 (794)
3 PRK14985 maltodextrin phosphor 100.0 2E-247 4E-252 2105.9 63.4 726 1-845 66-797 (798)
4 cd04300 GT1_Glycogen_Phosphory 100.0 2E-246 4E-251 2105.5 64.5 730 1-844 60-797 (797)
5 PRK14986 glycogen phosphorylas 100.0 1E-244 3E-249 2088.1 66.0 733 1-849 77-815 (815)
6 PF00343 Phosphorylase: Carboh 100.0 2E-240 4E-245 2033.1 46.2 706 25-846 1-713 (713)
7 COG0058 GlgP Glucan phosphoryl 100.0 4E-201 8E-206 1710.8 44.5 674 1-846 69-750 (750)
8 cd04299 GT1_Glycogen_Phosphory 100.0 1E-138 3E-143 1211.7 40.9 569 31-842 91-688 (778)
9 TIGR02094 more_P_ylases alpha- 100.0 5E-133 1E-137 1142.7 40.4 568 31-843 4-600 (601)
10 cd03791 GT1_Glycogen_synthase_ 99.8 2.3E-19 4.9E-24 197.4 24.6 267 448-840 199-473 (476)
11 TIGR02095 glgA glycogen/starch 99.8 4.7E-18 1E-22 188.6 23.8 266 448-839 194-468 (473)
12 PRK14098 glycogen synthase; Pr 99.7 8.7E-15 1.9E-19 165.6 24.8 268 448-842 209-483 (489)
13 PRK00654 glgA glycogen synthas 99.7 2.6E-15 5.7E-20 167.4 19.9 264 449-839 187-458 (466)
14 PLN02939 transferase, transfer 99.5 7.3E-12 1.6E-16 150.6 25.7 268 448-839 682-962 (977)
15 PRK14099 glycogen synthase; Pr 99.4 7.6E-12 1.7E-16 141.7 19.5 265 449-839 199-474 (485)
16 PLN02316 synthase/transferase 98.8 1.4E-07 3E-12 115.7 20.0 176 487-719 786-961 (1036)
17 COG0297 GlgA Glycogen synthase 97.9 0.00012 2.5E-09 84.6 14.0 271 448-839 197-473 (487)
18 cd03821 GT1_Bme6_like This fam 97.3 0.0022 4.8E-08 65.4 11.2 132 569-729 199-330 (375)
19 cd03793 GT1_Glycogen_synthase_ 97.2 0.008 1.7E-07 71.0 16.8 204 454-709 221-506 (590)
20 PLN00142 sucrose synthase 97.2 0.0037 8.1E-08 76.2 14.5 144 564-729 564-716 (815)
21 TIGR02470 sucr_synth sucrose s 97.2 0.0041 8.9E-08 75.7 14.4 146 563-729 540-693 (784)
22 TIGR02149 glgA_Coryne glycogen 97.2 0.0035 7.6E-08 67.1 12.5 133 569-729 197-330 (388)
23 TIGR03449 mycothiol_MshA UDP-N 97.2 0.0057 1.2E-07 66.4 14.0 136 569-728 215-351 (405)
24 cd01635 Glycosyltransferase_GT 97.2 0.0011 2.4E-08 63.5 7.2 120 578-727 109-229 (229)
25 PF00534 Glycos_transf_1: Glyc 97.2 0.001 2.2E-08 63.5 6.9 133 568-729 10-142 (172)
26 cd03808 GT1_cap1E_like This fa 97.0 0.0038 8.3E-08 63.1 10.1 129 570-729 185-313 (359)
27 cd03813 GT1_like_3 This family 97.0 0.0074 1.6E-07 68.5 13.1 123 570-719 290-412 (475)
28 cd03805 GT1_ALG2_like This fam 97.0 0.0047 1E-07 66.2 10.9 147 569-733 207-353 (392)
29 cd03792 GT1_Trehalose_phosphor 96.9 0.019 4.1E-07 62.1 14.9 134 569-727 186-321 (372)
30 cd03800 GT1_Sucrose_synthase T 96.8 0.015 3.4E-07 61.7 12.7 134 570-728 217-351 (398)
31 cd03796 GT1_PIG-A_like This fa 96.7 0.012 2.5E-07 64.7 10.8 134 570-734 190-323 (398)
32 cd03807 GT1_WbnK_like This fam 96.6 0.018 3.8E-07 58.7 11.3 127 569-728 189-315 (365)
33 cd04962 GT1_like_5 This family 96.6 0.028 6.1E-07 59.4 13.0 127 569-728 193-319 (371)
34 PRK15427 colanic acid biosynth 96.6 0.025 5.5E-07 63.2 13.1 129 572-728 221-353 (406)
35 cd03818 GT1_ExpC_like This fam 96.6 0.022 4.7E-07 62.4 12.1 137 569-728 207-349 (396)
36 cd03822 GT1_ecORF704_like This 96.5 0.047 1E-06 56.5 13.4 135 570-729 182-318 (366)
37 cd03809 GT1_mtfB_like This fam 96.5 0.033 7.2E-07 57.5 12.2 120 570-716 192-311 (365)
38 cd03801 GT1_YqgM_like This fam 96.4 0.061 1.3E-06 54.2 13.6 131 570-730 196-326 (374)
39 TIGR02472 sucr_P_syn_N sucrose 96.4 0.039 8.5E-07 62.0 13.2 139 569-728 244-389 (439)
40 TIGR02468 sucrsPsyn_pln sucros 96.4 0.021 4.6E-07 71.4 12.0 188 569-845 475-672 (1050)
41 PRK15484 lipopolysaccharide 1, 96.3 0.062 1.3E-06 59.3 13.7 136 569-727 189-325 (380)
42 PRK15490 Vi polysaccharide bio 96.2 0.052 1.1E-06 64.3 13.0 128 570-729 395-522 (578)
43 TIGR03088 stp2 sugar transfera 96.1 0.065 1.4E-06 57.6 12.7 131 570-728 191-321 (374)
44 cd05844 GT1_like_7 Glycosyltra 95.9 0.075 1.6E-06 56.2 11.7 128 573-728 188-319 (367)
45 cd04949 GT1_gtfA_like This fam 95.9 0.023 4.9E-07 60.8 7.7 123 574-728 205-328 (372)
46 cd03795 GT1_like_4 This family 95.8 0.022 4.7E-07 59.3 7.0 128 571-729 189-316 (357)
47 cd03819 GT1_WavL_like This fam 95.7 0.039 8.5E-07 57.7 8.5 134 569-729 181-314 (355)
48 PLN02949 transferase, transfer 95.6 0.15 3.3E-06 58.8 13.3 136 573-728 268-407 (463)
49 cd03794 GT1_wbuB_like This fam 95.5 0.1 2.3E-06 53.4 10.6 129 570-728 217-348 (394)
50 cd03817 GT1_UGDG_like This fam 95.5 0.067 1.4E-06 54.9 9.2 132 569-730 198-329 (374)
51 cd03811 GT1_WabH_like This fam 95.4 0.026 5.7E-07 56.8 5.9 130 569-730 185-314 (353)
52 cd03799 GT1_amsK_like This is 95.3 0.037 8E-07 57.6 6.7 131 571-729 177-311 (355)
53 cd03804 GT1_wbaZ_like This fam 95.1 0.04 8.7E-07 58.6 6.1 114 575-729 197-310 (351)
54 cd03825 GT1_wcfI_like This fam 95.0 0.24 5.3E-06 51.8 11.8 124 569-728 187-313 (365)
55 TIGR02918 accessory Sec system 94.9 0.29 6.4E-06 57.0 12.9 122 574-728 320-442 (500)
56 cd03814 GT1_like_2 This family 94.8 0.28 6E-06 50.6 11.2 122 570-728 194-315 (364)
57 PLN02871 UDP-sulfoquinovose:DA 94.2 0.21 4.5E-06 56.6 9.5 124 570-729 260-384 (465)
58 cd03820 GT1_amsD_like This fam 94.1 0.49 1.1E-05 47.8 11.0 125 572-728 177-302 (348)
59 cd03812 GT1_CapH_like This fam 94.0 0.2 4.4E-06 52.5 8.4 120 569-718 188-307 (358)
60 cd03806 GT1_ALG11_like This fa 94.0 0.36 7.8E-06 54.4 10.7 138 572-728 236-377 (419)
61 PRK15179 Vi polysaccharide bio 93.8 0.27 5.9E-06 59.7 10.1 128 570-729 514-641 (694)
62 cd04955 GT1_like_6 This family 93.6 0.68 1.5E-05 48.6 11.3 120 575-727 195-314 (363)
63 cd03798 GT1_wlbH_like This fam 93.5 0.29 6.2E-06 49.7 8.1 129 570-728 199-327 (377)
64 cd03823 GT1_ExpE7_like This fa 92.9 0.45 9.8E-06 48.8 8.7 126 571-730 189-314 (359)
65 cd03802 GT1_AviGT4_like This f 92.2 0.45 9.8E-06 49.4 7.6 122 575-729 173-294 (335)
66 PRK10307 putative glycosyl tra 91.7 1.6 3.4E-05 48.3 11.5 127 569-729 225-357 (412)
67 PF08323 Glyco_transf_5: Starc 91.2 0.2 4.3E-06 52.9 3.8 36 40-75 8-43 (245)
68 cd04946 GT1_AmsK_like This fam 91.0 2.1 4.6E-05 47.9 11.8 130 572-729 229-360 (407)
69 cd03816 GT1_ALG1_like This fam 90.4 1.3 2.7E-05 49.8 9.3 140 571-734 230-371 (415)
70 PHA01630 putative group 1 glyc 89.3 1.5 3.2E-05 48.5 8.7 119 573-730 142-260 (331)
71 cd03788 GT1_TPS Trehalose-6-Ph 88.5 9.5 0.00021 44.0 14.7 142 571-728 262-410 (460)
72 cd04951 GT1_WbdM_like This fam 84.3 2.9 6.3E-05 43.7 7.2 126 569-728 184-309 (360)
73 PF13692 Glyco_trans_1_4: Glyc 82.6 2.7 5.9E-05 38.6 5.5 124 572-734 1-125 (135)
74 TIGR03087 stp1 sugar transfera 80.7 15 0.00033 40.5 11.4 109 571-710 222-331 (397)
75 PHA01633 putative glycosyl tra 78.2 8.7 0.00019 43.2 8.6 122 571-727 146-270 (335)
76 PLN02275 transferase, transfer 76.9 13 0.00027 41.2 9.3 135 575-728 215-358 (371)
77 PRK09922 UDP-D-galactose:(gluc 76.7 14 0.00031 40.2 9.6 125 574-729 181-308 (359)
78 TIGR02400 trehalose_OtsA alpha 75.9 1.5E+02 0.0033 34.6 18.0 134 572-715 258-398 (456)
79 PLN02501 digalactosyldiacylgly 58.0 38 0.00082 42.3 8.7 119 577-730 550-668 (794)
80 PRK10125 putative glycosyl tra 56.9 25 0.00054 39.9 6.7 57 669-730 300-356 (405)
81 PLN02846 digalactosyldiacylgly 43.7 76 0.0017 37.5 8.0 119 576-729 231-349 (462)
82 COG0438 RfaG Glycosyltransfera 43.1 1.5E+02 0.0033 29.3 8.9 125 574-729 200-326 (381)
83 cd00127 DSPc Dual specificity 36.7 74 0.0016 29.7 5.4 38 241-282 81-121 (139)
84 TIGR03713 acc_sec_asp1 accesso 32.0 2.9E+02 0.0063 33.1 10.4 176 572-837 320-515 (519)
85 smart00195 DSPc Dual specifici 29.3 1.2E+02 0.0026 28.7 5.5 40 240-283 77-119 (138)
86 PF14474 RTC4: RTC4-like domai 29.1 44 0.00095 32.7 2.6 32 254-285 85-117 (124)
87 KOG0853 Glycosyltransferase [C 27.7 2.5E+02 0.0054 33.9 8.7 148 569-732 269-418 (495)
88 TIGR00236 wecB UDP-N-acetylglu 26.3 2.9E+02 0.0062 30.3 8.5 69 657-735 256-325 (365)
89 PF00782 DSPc: Dual specificit 22.8 1.3E+02 0.0028 28.1 4.4 38 241-282 73-113 (133)
90 PRK14501 putative bifunctional 20.6 4.8E+02 0.01 32.3 9.7 135 572-716 264-405 (726)
No 1
>KOG2099 consensus Glycogen phosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.1e-263 Score=2129.54 Aligned_cols=738 Identities=56% Similarity=0.967 Sum_probs=715.9
Q ss_pred CcccCCcchHHHHHhcCcHHHHHHHHHHhCCCHHHHHccCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcce
Q 003072 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLF 80 (850)
Q Consensus 1 ~Efl~Gr~l~n~l~nlgl~~~~~eal~~lg~~le~~~~~E~da~LgnGGLGrLAgc~ldS~a~L~~P~~G~GlrY~yG~F 80 (850)
|||+|||+|+|+++||||++.+.+||.+||+++|++.++|+|||||||||||||+||||||||||+|+|||||||+||+|
T Consensus 88 lEf~mGRaL~Ntm~Nlglq~~~deAl~qlG~dlEel~e~E~DagLGNGGLGRLAaCFlDSMATlglpA~GYGlRYeyGiF 167 (843)
T KOG2099|consen 88 LEFYMGRALQNTMINLGLQNACDEALYQLGLDLEELEEQEEDAGLGNGGLGRLAACFLDSMATLGLPAYGYGLRYEYGIF 167 (843)
T ss_pred hHHhhhhHHHHHHHhccCcchhHHHHHHhCcCHHHHHhcCcCcCcCCcchHHHHHHHHHHHhhcCCccccccceeehhhH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCceeeecccccccCCCcccccCCceeeeecCCeeeeCCCCCeeeeCCeeEEEEEEeecCCCCCCCCeEEEEEEE
Q 003072 81 KQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWS 160 (850)
Q Consensus 81 ~Q~I~dG~Q~E~pd~Wl~~gnpwei~r~~~~~~V~f~G~~~~~~~G~~~w~~~~~v~A~~yd~pi~Gy~~~~~~~LRLW~ 160 (850)
+|+|.+|||+|.||+||+.|||||+.|+++++||+|||+|+..++| ..|++++.|.|+|||+|||||+|+++|+||||+
T Consensus 168 ~QkI~~g~Q~E~~ddWL~~gnPWE~~R~e~~lPV~FyGkV~~~~~g-~kWid~q~V~A~~YD~PvPGyk~n~vntlRLWs 246 (843)
T KOG2099|consen 168 KQKITDGWQVEEPDDWLRYGNPWEKARPEVMLPVHFYGKVEHTPDG-SKWIDTQVVLAMPYDTPVPGYKNNTVNTLRLWS 246 (843)
T ss_pred HHHhcCCccccchHHHHHcCCchhhcCcceEeEEEEEEEEEeCCCc-ceeecceeEEEeccCCCCCCcccCcceeeeeec
Confidence 9999999999999999999999999999999999999999988888 579999999999999999999999999999999
Q ss_pred ecCCCCcccccccCCCchhHHHHHhhhcccccceeccCCCccccchhhhhhhhhhhhchHHHHHHHHHHhcCc-----cc
Q 003072 161 TMVPSEDFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGA-----NV 235 (850)
Q Consensus 161 a~v~~~~fdl~~fn~g~~~~a~~~~~~~~~IT~~LYp~D~~~~GkelRLkQEyflg~aslqdiirr~~~~~gG-----~~ 235 (850)
|+ ++++|||..||.|+|.+|+.++..+++||.+|||||+..+||+||||||||+|+||||||||||+++.+| ..
T Consensus 247 ak-a~~df~l~~fN~Gdy~~av~~~~~AenI~~VLYPnDnf~eGKeLRLKQqyf~caAtLqDIirRFk~sk~~~r~~~~~ 325 (843)
T KOG2099|consen 247 AK-APNDFDLKDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQQYFLCAATLQDIIRRFKSSKFGCREPVRT 325 (843)
T ss_pred cC-CCCCCCHHhccCchHHHHHHHHHhhhhceEEecCCCccccchhhhhhhhhhhhHHHHHHHHHHHhhcccCccccccc
Confidence 99 7779999999999999999999999999999999999999999999999999999999999999988776 34
Q ss_pred ccccCCCCceEEeCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHccceeecccCCCCcccccCCHHHHHHhchhHHHHHH
Q 003072 236 NWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIE 315 (850)
Q Consensus 236 ~l~~l~~~~~ihlNDtHpalai~ElmR~Lid~~gl~~~eAw~i~~~~~~fTnHT~vpealEkw~~~l~~~lLpr~~~II~ 315 (850)
+|++||++++||||||||+||||||||+|||.+||+|++||+||++||+|||||++|||||+||++||++|||||+||||
T Consensus 326 ~~~~FPdkVAiQlNDTHPtLaIpELmRiLvD~e~l~W~~AWdit~kT~AYTNHTVlpEALErWp~~L~e~LLPRHleIIy 405 (843)
T KOG2099|consen 326 NFEEFPDKVAIQLNDTHPTLAIPELMRILVDLEGLDWDKAWDITQKTCAYTNHTVLPEALERWPVSLMEKLLPRHLEIIY 405 (843)
T ss_pred chhhCcHhheeeccCCCccccHHHHHHHHHhcccCCHHHHHHHhhhheeeccccccHHHHHHhhHHHHHHhhhHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHhhCCCCchhhHHHHhhhccccccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhcc
Q 003072 316 MIDEELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQED 395 (850)
Q Consensus 316 ~in~~f~~~~~~~~~~~~~~~~~~~~~~l~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (850)
+||.+|++.+.++||+ |.+++++|+||+
T Consensus 406 ~In~~~l~~i~~~fp~-----D~drlrrmsiie----------------------------------------------- 433 (843)
T KOG2099|consen 406 EINQRFLQTVAAKFPG-----DVDRLRRMSIIE----------------------------------------------- 433 (843)
T ss_pred HHHHHHHHHHHHHCCC-----cHHHHhhhhhhh-----------------------------------------------
Confidence 9999999999999998 999999999988
Q ss_pred cccccccCCCCCCcccccccCCCCCCccchhhhhhhhhHHHHHhhhhcCCCCCeeeeeeeeeccCcchhHHHHHHHHHHh
Q 003072 396 GVLEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVT 475 (850)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~Ma~LAl~~S~~vNGVS~lH~ei~k 475 (850)
+. ++++++|||+||++|||+||||++|||+|+|
T Consensus 434 ---------------------------------------------e~--~~~k~i~MA~L~ivgsHaVNGVa~iHSeilK 466 (843)
T KOG2099|consen 434 ---------------------------------------------EN--SPEKRINMAHLCIVGSHAVNGVAEIHSEILK 466 (843)
T ss_pred ---------------------------------------------cC--CccceeeeeeeeeecccccccHHHHHHHHHH
Confidence 20 2347999999999999999999999999999
Q ss_pred HhhhhhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 003072 476 NEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKM 555 (850)
Q Consensus 476 ~~~f~~f~~l~P~kf~niTNGV~~rrWl~~~Np~L~~Li~~~iG~~~W~~~~~~l~~l~~~~~D~~f~~~w~~vK~~~K~ 555 (850)
+.+|+||+++||+||+||||||||||||.+|||.|++||+++||+ +|++|+++|.+|+++++|++|+++|+++|++||.
T Consensus 467 ~~~F~Df~e~~P~KFqNkTNGITPRRWL~~cnP~LadlI~e~ige-~~i~dl~~l~~L~~~a~d~~f~~~~a~vK~~NKl 545 (843)
T KOG2099|consen 467 QSVFKDFYELEPEKFQNKTNGITPRRWLLLCNPGLADLITEKIGE-EWITDLDQLTKLRKFADDEEFQREWAKVKQENKL 545 (843)
T ss_pred HHHHHHHHHhChHHhccccCCcCHHHHHHhcCchHHHHHHHHhhh-HhhhhHHHHHHHHHhcccHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999999999999999995 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHH
Q 003072 556 KVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRI 635 (850)
Q Consensus 556 ~L~~~i~~~~g~~ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~i 635 (850)
+|++||++.+|+.++|++|||+|||||||||||+|||||+|+||++||+ ++. ..++||++||||||+|+|++||.|
T Consensus 546 k~a~~le~e~~v~inp~smFDiqVKRIHEYKRQllN~l~vi~~y~riK~-e~~---k~fvprtvm~GGKaapgY~mAK~I 621 (843)
T KOG2099|consen 546 KLAAYLEKEYGVKINPSSMFDIQVKRIHEYKRQLLNCLHVIYLYNRIKE-EPA---KAFVPRTVMIGGKAAPGYHMAKLI 621 (843)
T ss_pred HHHHHHHHHhCcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhh---hccCceEEEEcCccCchhHHHHHH
Confidence 9999999999999999999999999999999999999999999999997 544 448999999999999999999999
Q ss_pred HHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccc
Q 003072 636 VKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEI 715 (850)
Q Consensus 636 Ik~I~~va~~vn~Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi 715 (850)
||||++||++|||||.|+++|||||||||+||+||+||||+|+|+||||||+||||||||||||||||+|||||||||||
T Consensus 622 iklit~V~dvVN~Dp~vgd~LKViFl~nY~Vs~AE~iIPasdLSe~ISTAGtEASGT~NMKF~lNG~l~IGTlDGANVEm 701 (843)
T KOG2099|consen 622 IKLITAVADVVNNDPEVGDRLKVIFLENYRVSLAEKIIPASDLSEQISTAGTEASGTGNMKFMLNGALTIGTLDGANVEM 701 (843)
T ss_pred HHHHHHHHHHhcCChhhhheeEEEEecCcccchhhhccchHHHHHHhhhccccccCCCcceEEecCeEEEecccccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeeeccchhhhhhhhhhc--CCCCCCCChhHHHHHHHHhcCCCCccc---HHHHHHHhccCCCCCCCccccc
Q 003072 716 RQEVGEENFFLFGARAHEIAGLRKER--SEGKFVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLV 790 (850)
Q Consensus 716 ~e~~g~eN~f~fG~~~~EV~~l~~~~--~~~~~~~~~~l~~v~~~i~~g~f~~~~---~~~l~~~L~~~~~~~~~D~y~v 790 (850)
+|++|+||+||||+++++|+.|++++ ..+.|.++|++++|+++|.+|.|++.+ |+++.+.|.++ |+|+|
T Consensus 702 ~eE~GeeN~FiFG~~~e~V~~L~k~gy~a~~~~~~~P~l~~v~~~i~sG~Fsp~~pd~fkd~~~~l~~h------D~f~V 775 (843)
T KOG2099|consen 702 AEEAGEENFFIFGMRVEDVEALRKKGYNAQEYYDPLPELKQVIDQIESGFFSPKNPDEFKDIVNMLMYH------DYFLV 775 (843)
T ss_pred HHHcCcccEEEecccHHHHHHHHhhcccccccCCCCchHHHHHHHHhcCccCCCCchHHHHHHHhhhcc------ceEEe
Confidence 99999999999999999999999985 444578999999999999999999876 88888888874 99999
Q ss_pred ccchhhHHHHHHHHHHHhcCHhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcccccCCC
Q 003072 791 GKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVELP 850 (850)
Q Consensus 791 l~DF~sY~~aq~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~~iw~i~p~~~p 850 (850)
++||+||++||++|+++|.||++|++|+|+|||+||+|||||||.|||++||+|+|++.|
T Consensus 776 ~~Df~sYi~~q~kVd~~y~nqk~W~~msi~niA~sgkFSSDRtI~eYa~eIWnvep~~~~ 835 (843)
T KOG2099|consen 776 FADFEAYIKCQEKVDQLYRNQKEWLKMSILNIAGSGKFSSDRTIAEYAREIWNVEPSELP 835 (843)
T ss_pred eCcHHHHHHHHHHHHHHHhCHHHHHHHHHHhhhcccccCccchHHHHHHHhcCCCcccCC
Confidence 999999999999999999999999999999999999999999999999999999999865
No 2
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=100.00 E-value=2.8e-248 Score=2114.69 Aligned_cols=730 Identities=53% Similarity=0.919 Sum_probs=705.6
Q ss_pred CcccCCcchHHHHHhcCcHHHHHHHHHHhCCCHHHHHccCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcce
Q 003072 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLF 80 (850)
Q Consensus 1 ~Efl~Gr~l~n~l~nlgl~~~~~eal~~lg~~le~~~~~E~da~LgnGGLGrLAgc~ldS~a~L~~P~~G~GlrY~yG~F 80 (850)
|||||||+|.|||+|||+++++++||++||++||+++++|+||||||||||||||||||||||||+|++||||||+||||
T Consensus 57 ~EfL~Gr~l~nnl~nlgl~~~~~~~l~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~Atl~~P~~GyGirY~yG~F 136 (794)
T TIGR02093 57 AEFLMGRLLGNNLLNLGLYDEVKEALRELGLDLEEILEIENDAGLGNGGLGRLAACFLDSLATLGLPATGYGIRYEYGLF 136 (794)
T ss_pred hhhhcchHHHHHHHhCCCHHHHHHHHHHhCCCHHHHHhcCCCCCCCCCchHHHHHHHHHHHHhCCCCeEEEEeeecCCce
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCceeeecccccccCCCcccccCCceeeeecCCeeeeCCC-CC--eeeeCCeeEEEEEEeecCCCCCCCCeEEEE
Q 003072 81 KQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGSD-GK--SHWIGGEDIKAVAYDIPIPGYKTKTTINLR 157 (850)
Q Consensus 81 ~Q~I~dG~Q~E~pd~Wl~~gnpwei~r~~~~~~V~f~G~~~~~~~-G~--~~w~~~~~v~A~~yd~pi~Gy~~~~~~~LR 157 (850)
+|+|.||||+|.||+|+..++|||++|++.+++|+|+|+++...+ |+ .+|++++.|+|+|||+|||||+++++|+||
T Consensus 137 ~Q~I~dG~Q~E~pd~Wl~~~~pwe~~r~~~~~~V~f~G~v~~~~~~g~~~~~w~~~~~v~avpyD~pi~Gy~~~~vn~LR 216 (794)
T TIGR02093 137 KQKIVDGWQVELPDDWLRYGNPWEIRRPDRSYEVRFGGRVELQPDSDRLRPRWVPAETVLAIPYDVPVPGYRTDTVNTLR 216 (794)
T ss_pred EEEEECCEEEEcCCCcCCCCCCceeecCCcEEEEEeCCEEeeeccCCcceeEeeCceEEEEeecceeecCCCCCceEEEE
Confidence 999999999999999999999999999999999999999975443 63 349999999999999999999999999999
Q ss_pred EEEecCCCCcccccccCCCchhHHHHHhhhcccccceeccCCCccccchhhhhhhhhhhhchHHHHHHHHHHhcCccccc
Q 003072 158 LWSTMVPSEDFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNW 237 (850)
Q Consensus 158 LW~a~v~~~~fdl~~fn~g~~~~a~~~~~~~~~IT~~LYp~D~~~~GkelRLkQEyflg~aslqdiirr~~~~~gG~~~l 237 (850)
||+++ +.+.|||..||.|+|.+|+++++.+|+||++|||+|++++||+|||||||||||||+|||||+|++.+ .+|
T Consensus 217 LW~a~-~~~~f~l~~fn~gdy~~a~~~~~~~e~It~vLYp~D~~~~Gk~lRLkQeyfl~~aglqdiir~~~~~~---~~l 292 (794)
T TIGR02093 217 LWSAE-APEEFDLDAFNAGDYYEAVEEKNRAENISRVLYPNDSTYEGKELRLKQQYFFVSASLQDIIRRHLETH---PDL 292 (794)
T ss_pred EEEec-CccccCHhhccCccHhhhhhChhhcCccccCCcCCCCccchHHHHHHHHHHhhhhHHHHHHHHHHHhC---CCh
Confidence 99999 56789999999999999999999999999999999999999999999999999999999999999987 589
Q ss_pred ccCCCCceEEeCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHccceeecccCCCCcccccCCHHHHHHhchhHHHHHHHH
Q 003072 238 EEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMI 317 (850)
Q Consensus 238 ~~l~~~~~ihlNDtHpalai~ElmR~Lid~~gl~~~eAw~i~~~~~~fTnHT~vpealEkw~~~l~~~lLpr~~~II~~i 317 (850)
+.||++++|||||||||||+|||||+|||++|++|++||+||+++|+||||||||||||+||++||+++||||++||++|
T Consensus 293 ~~l~~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~wp~~l~~~~Lpr~~~iI~~I 372 (794)
T TIGR02093 293 SDFPKKVAIQLNDTHPALAIPELMRLLIDEEGMDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFQKLLPRHLEIIYEI 372 (794)
T ss_pred hhCCcceEEEecCCchHHHHHHHHHHHHHhcCCCHHHHHHHHHhheecccCCCChHHhCCcCHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhCCCCchhhHHHHhhhccccccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhcccc
Q 003072 318 DEELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGV 397 (850)
Q Consensus 318 n~~f~~~~~~~~~~~~~~~~~~~~~~l~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (850)
|++|+..++..+|+ +.+++.+|+||+
T Consensus 373 n~~fl~~~~~~~p~-----d~~~~~~~sii~------------------------------------------------- 398 (794)
T TIGR02093 373 NRRFLAELAAKGPG-----DEAKIRRMSIIE------------------------------------------------- 398 (794)
T ss_pred hHHHHHHHHHhCCC-----cHHHHhheeeee-------------------------------------------------
Confidence 99999999999998 899999999988
Q ss_pred cccccCCCCCCcccccccCCCCCCccchhhhhhhhhHHHHHhhhhcCCCCCeeeeeeeeeccCcchhHHHHHHHHHHhHh
Q 003072 398 LEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNE 477 (850)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~Ma~LAl~~S~~vNGVS~lH~ei~k~~ 477 (850)
+ +++++||||+||+++||+|||||+||++|+|++
T Consensus 399 -------------------------------------------~---~~~~~v~Ma~LAi~~S~~vNGVS~lH~eilk~~ 432 (794)
T TIGR02093 399 -------------------------------------------E---GQSKRVRMANLAIVGSHSVNGVAALHTELLKED 432 (794)
T ss_pred -------------------------------------------c---CCCCEEehHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 2 222479999999999999999999999999999
Q ss_pred hhhhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHH
Q 003072 478 VFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKV 557 (850)
Q Consensus 478 ~f~~f~~l~P~kf~niTNGV~~rrWl~~~Np~L~~Li~~~iG~~~W~~~~~~l~~l~~~~~D~~f~~~w~~vK~~~K~~L 557 (850)
+|++|+++||+||+|||||||+|||+.+|||+|++||+++||+ +|+++++.|++|+++++|++|+++|+++|++||.+|
T Consensus 433 ~~~df~~l~P~kf~n~TNGVt~rrWl~~~np~L~~Li~~~ig~-~W~~d~~~l~~l~~~~~D~~f~~~l~~vK~~nK~~L 511 (794)
T TIGR02093 433 LLKDFYELYPEKFNNKTNGITPRRWLRLANPGLSALLTETIGD-DWLTDLDLLKKLEPYADDSEFLEEFRQVKQANKQRL 511 (794)
T ss_pred HHHHHHhhCCCccCCcCCCCCccchhhhcCHHHHHHHHHhcCc-hhhhcHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999996 899999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHH
Q 003072 558 VSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVK 637 (850)
Q Consensus 558 ~~~i~~~~g~~ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk 637 (850)
++||++++|+.+||++|||+|||||||||||+||||+|++||.+|++ +|.. +++||||||||||||+|.+||+|||
T Consensus 512 ~~~i~~~~g~~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~-~p~~---~~~P~~~IFaGKAaP~y~~aK~iIk 587 (794)
T TIGR02093 512 AAYIKEHTGVEVDPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKE-DPPK---DIVPRTVIFGGKAAPGYHMAKLIIK 587 (794)
T ss_pred HHHHHHhcCCccCccccchhhheechhhhHHHHHHhhhHHHHHHHHh-CCCc---CCCCeEEEEEecCCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997 6553 3789999999999999999999999
Q ss_pred HHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccc
Q 003072 638 FITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQ 717 (850)
Q Consensus 638 ~I~~va~~vn~Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e 717 (850)
+|++||++||+||+++++|||||||||+||+||+||||||||+||||||+||||||||||||||||||||||||||||++
T Consensus 588 lI~~va~~iN~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~e 667 (794)
T TIGR02093 588 LINSVAEVVNNDPAVGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIRE 667 (794)
T ss_pred HHHHHHHHhccChhhCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeeccchhhhhhhhhhc--CCCCCCCChhHHHHHHHHhcCCCCccc---HHHHHHHhccCCCCCCCccccccc
Q 003072 718 EVGEENFFLFGARAHEIAGLRKER--SEGKFVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGK 792 (850)
Q Consensus 718 ~~g~eN~f~fG~~~~EV~~l~~~~--~~~~~~~~~~l~~v~~~i~~g~f~~~~---~~~l~~~L~~~~~~~~~D~y~vl~ 792 (850)
+||++|+|+||++++||.++++++ +...|..+|.|++|+|+|.+|+|++.+ |++||++|+.+ +|+|||++
T Consensus 668 ~vG~eN~fiFG~~~~ev~~~~~~~Y~~~~~y~~~~~l~~~~d~i~~g~f~~~~~~~f~~l~~~l~~~-----~D~y~vl~ 742 (794)
T TIGR02093 668 EVGAENIFIFGLTVEEVEALREKGYNPREYYEADPELKRVLDLISSGTFSPGDPGLFRPLYDSLLNH-----GDPFFVLA 742 (794)
T ss_pred HhCcccEEEcCCCHHHHHHHHHcCCCchhcccCCHHHHHHHHHHhcCCCCCCCchHHHHHHHHHccC-----CCeeeeec
Confidence 999999999999999999999876 333378999999999999999998754 99999999875 89999999
Q ss_pred chhhHHHHHHHHHHHhcCHhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcc
Q 003072 793 DFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI 844 (850)
Q Consensus 793 DF~sY~~aq~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~~iw~i 844 (850)
||+||++||++|+++|.|+++|++|||.|||+||+|||||||+|||++||++
T Consensus 743 Df~sY~~~q~~v~~~Y~d~~~W~~~~i~Nia~~G~FSsDRtI~eYa~~IW~~ 794 (794)
T TIGR02093 743 DFAAYVDAQERVDALYRDQLEWTKKSILNIANSGKFSSDRTIREYAKEIWHV 794 (794)
T ss_pred cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCcCCchhHHHHHHHhhCc
Confidence 9999999999999999999999999999999999999999999999999985
No 3
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=100.00 E-value=1.8e-247 Score=2105.89 Aligned_cols=726 Identities=45% Similarity=0.791 Sum_probs=705.8
Q ss_pred CcccCCcchHHHHHhcCcHHHHHHHHHHhCCCHHHHHccCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcce
Q 003072 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLF 80 (850)
Q Consensus 1 ~Efl~Gr~l~n~l~nlgl~~~~~eal~~lg~~le~~~~~E~da~LgnGGLGrLAgc~ldS~a~L~~P~~G~GlrY~yG~F 80 (850)
|||||||+|.|||+|||++++++|||++||+|+|+++++|+||||||||||||||||||||||||+|++||||||+||||
T Consensus 66 ~EfL~Gr~l~nnl~nlgl~~~~~~al~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~AtL~lP~~GyGirY~yG~F 145 (798)
T PRK14985 66 MEFLIGRLTGNNLLNLGWYDDVQDVLKAYDINLTDLLEEETDPALGNGGLGRLAACFLDSMATVGQPATGYGLNYQYGLF 145 (798)
T ss_pred hhhhccHHHHHHHHhcCCHHHHHHHHHHcCCCHHHHhccCCCCCCCCcchHHHHHHHHHHHHhCCCCeEEEEeccCCCCe
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCceeeecccccccCCCcccccCCceeeeecCCeeeeCCCCCeeeeCCeeEEEEEEeecCCCCCCCCeEEEEEEE
Q 003072 81 KQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWS 160 (850)
Q Consensus 81 ~Q~I~dG~Q~E~pd~Wl~~gnpwei~r~~~~~~V~f~G~~~~~~~G~~~w~~~~~v~A~~yd~pi~Gy~~~~~~~LRLW~ 160 (850)
+|+|++|+|+|.||.|+..++|||++|++..++|+|+|+++.. +|+.+|++++.|.|+|||+|||||+|.++|+||||+
T Consensus 146 ~Q~I~dG~Q~E~pd~Wl~~~~pwe~~r~~~~~~V~f~G~v~~~-~G~~~w~~~~~v~avpyDvpi~Gy~~~~~n~LRLW~ 224 (798)
T PRK14985 146 RQSFVDGKQVEAPDDWHRDSYPWFRHNEALDVQVGIGGKVTKQ-DGRERWEPAFTITGEAWDLPVVGYRNGVAQPLRLWQ 224 (798)
T ss_pred EEEEECCeEEECCCCcccCCCCceecCCCceEEEeeCCEEEee-CCcEEEECCEEEEEEeccccccCCCCCceEEEEEeE
Confidence 9999999999999999999999999999999999999999754 788899999999999999999999999999999999
Q ss_pred ecCCCCcccccccCCCchhHHHHHhhhcccccceeccCCCccccchhhhhhhhhhhhchHHHHHHHHHHhcCcccccccC
Q 003072 161 TMVPSEDFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEF 240 (850)
Q Consensus 161 a~v~~~~fdl~~fn~g~~~~a~~~~~~~~~IT~~LYp~D~~~~GkelRLkQEyflg~aslqdiirr~~~~~gG~~~l~~l 240 (850)
++++ .+|||..||+|||.+++++++.+|+||++|||+|++++||+|||||||||||||+|||||||++.+ ++|+.|
T Consensus 225 a~~~-~~~~l~~fn~gdy~~a~en~~~~e~It~~LYp~D~~~~Gk~lRLkQEyfl~sa~vqdilr~~~~~~---~~l~~l 300 (798)
T PRK14985 225 ATHA-HPFDLTKFNDGDFLRAEQQGIDAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHLAG---RKLHEL 300 (798)
T ss_pred cCCC-CccCHHHcCCcchhhccccchhhcchhceecCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcC---CChhhC
Confidence 9964 489999999999999999999999999999999999999999999999999999999999999854 789999
Q ss_pred CCCceEEeCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHccceeecccCCCCcccccCCHHHHHHhchhHHHHHHHHhHH
Q 003072 241 PEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEE 320 (850)
Q Consensus 241 ~~~~~ihlNDtHpalai~ElmR~Lid~~gl~~~eAw~i~~~~~~fTnHT~vpealEkw~~~l~~~lLpr~~~II~~in~~ 320 (850)
|++++|||||||||||+|||||+|||++|++|++||+||+++|+||||||||||||+||++||+++||||++||++||++
T Consensus 301 ~~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~Aw~iv~~~~~yTnHT~lpealE~w~~~l~~~~Lpr~~~ii~~in~~ 380 (798)
T PRK14985 301 PDYEVIQLNDTHPTIAIPELLRVLLDEHQLSWDDAWAITSKTFAYTNHTLMPEALECWDEKLVKSLLPRHMQIIKEINTR 380 (798)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHheeeecCCCChhhhCCCCHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCchhhHHHHhhhccccccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhccccccc
Q 003072 321 LVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEE 400 (850)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (850)
|+..+...||+ +.+++.+|+||+
T Consensus 381 fl~~~~~~~~~-----d~~~~~~~sii~---------------------------------------------------- 403 (798)
T PRK14985 381 FKTLVEKTWPG-----DKKVWAKLAVVH---------------------------------------------------- 403 (798)
T ss_pred HHHHHHHhCCC-----cHHHhhhhhhcc----------------------------------------------------
Confidence 99999999998 899999999987
Q ss_pred ccCCCCCCcccccccCCCCCCccchhhhhhhhhHHHHHhhhhcCCCCCeeeeeeeeeccCcchhHHHHHHHHHHhHhhhh
Q 003072 401 ESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFN 480 (850)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~Ma~LAl~~S~~vNGVS~lH~ei~k~~~f~ 480 (850)
+ ++||||+||+++||+|||||+||++|+++.||+
T Consensus 404 ----------------------------------------~------~~v~Ma~LAi~~S~~vNGVS~lH~eil~~~~f~ 437 (798)
T PRK14985 404 ----------------------------------------D------KQVRMANLCVVSGFAVNGVAALHSDLVVKDLFP 437 (798)
T ss_pred ----------------------------------------C------CeeehHHHHHHhcchhHhhHHHHhchhHHhhhh
Confidence 2 379999999999999999999999999999999
Q ss_pred hhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 003072 481 EFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSF 560 (850)
Q Consensus 481 ~f~~l~P~kf~niTNGV~~rrWl~~~Np~L~~Li~~~iG~~~W~~~~~~l~~l~~~~~D~~f~~~w~~vK~~~K~~L~~~ 560 (850)
+|+++||++|+|||||||+|||+.+|||+|++||+++||+ +|+++++.|++|+++.+|++|+++|+++|++||.+|++|
T Consensus 438 df~~l~p~kf~nvTNGVt~rrWl~~~np~L~~Li~~~ig~-~W~~d~~~l~~l~~~~~D~~f~~~~~~vK~~nK~~L~~~ 516 (798)
T PRK14985 438 EYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKTLKK-EWANDLDQLINLEKYADDAAFRQQYREIKQANKVRLAEF 516 (798)
T ss_pred hhHhhCCCccCCcCCCcCcchhhhhhCHHHHHHHHHhcCc-chhhChHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred HHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHH
Q 003072 561 IKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFIT 640 (850)
Q Consensus 561 i~~~~g~~ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~ 640 (850)
|++++|+.+||++|||+|||||||||||+||+|+|++||.+|++ +|... ++||||||||||||+|.+||+|||+|+
T Consensus 517 i~~~~g~~ldp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~-~p~~~---~~P~~~IFaGKAaP~y~~aK~iIklI~ 592 (798)
T PRK14985 517 VKQRTGIEINPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRE-NPQAD---RVPRVFLFGAKAAPGYYLAKNIIFAIN 592 (798)
T ss_pred HHHHhCCccCchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHh-CCCcC---CCCeEEEEeecCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999997 65543 789999999999999999999999999
Q ss_pred HHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccccccccccccc
Q 003072 641 DVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVG 720 (850)
Q Consensus 641 ~va~~vn~Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g 720 (850)
+||++||+||+++++|||||||||+|++||+||||||||+||||||+||||||||||||||||||||||||||||+++||
T Consensus 593 ~va~~in~Dp~v~~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~e~vG 672 (798)
T PRK14985 593 KVAEVINNDPLVGDKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEQVG 672 (798)
T ss_pred HHHHHhcCChhhCCceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeccchhhhhhhhhhcCCCC---CCCChhHHHHHHHHhcCCCCccc---HHHHHHHhccCCCCCCCcccccccch
Q 003072 721 EENFFLFGARAHEIAGLRKERSEGK---FVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDF 794 (850)
Q Consensus 721 ~eN~f~fG~~~~EV~~l~~~~~~~~---~~~~~~l~~v~~~i~~g~f~~~~---~~~l~~~L~~~~~~~~~D~y~vl~DF 794 (850)
++|+|+||++++||..++.++ |++ |..+|.|++|+|+|.+|+|++.+ |++||++|..+ +|+|||++||
T Consensus 673 ~eN~f~fG~~~~ev~~~~~~~-y~~~~~y~~~~~l~~v~d~i~~g~f~~~~~~~f~~i~~~l~~~-----~D~y~vl~Df 746 (798)
T PRK14985 673 EENIFIFGHTVEQVKALLAKG-YDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSLKQG-----GDPYLVLADF 746 (798)
T ss_pred cCcEEEeCCCHHHHHHHHHcC-CChhhhccCCHHHHHHHHHHhcCCCCCCCchhHHHHHHHHhhC-----CCeeEeeccH
Confidence 999999999999999999876 443 77999999999999999998765 99999999865 8999999999
Q ss_pred hhHHHHHHHHHHHhcCHhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhccc
Q 003072 795 PSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNII 845 (850)
Q Consensus 795 ~sY~~aq~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~~iw~i~ 845 (850)
+||++||++|+++|.|+++|++|||.|||+||+|||||||+|||++||+++
T Consensus 747 ~sY~~~q~~v~~~y~d~~~W~~~~i~Nia~~G~FSsDRtI~eYa~~IW~~~ 797 (798)
T PRK14985 747 AAYVEAQKQVDALYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIWQAK 797 (798)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHccCCcCcHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999999999999999999999999986
No 4
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=100.00 E-value=1.7e-246 Score=2105.52 Aligned_cols=730 Identities=55% Similarity=0.928 Sum_probs=704.7
Q ss_pred CcccCCcchHHHHHhcCcHHHHHHHHHHhCCCHHHHHccCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcce
Q 003072 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLF 80 (850)
Q Consensus 1 ~Efl~Gr~l~n~l~nlgl~~~~~eal~~lg~~le~~~~~E~da~LgnGGLGrLAgc~ldS~a~L~~P~~G~GlrY~yG~F 80 (850)
|||||||+|.|||+||||++++++||++||+++|+++++|+||||||||||||||||||||||||+|++||||||+||||
T Consensus 60 ~EfL~Gr~L~nnl~nLgl~~~~~~~L~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~AtLglP~~G~GirY~yG~F 139 (797)
T cd04300 60 LEFLMGRLLGNNLLNLGLYDEVREALAELGVDLEDLEEQEPDAGLGNGGLGRLAACFLDSLATLGLPGYGYGIRYEYGLF 139 (797)
T ss_pred hhhhcchHHHHHHHhCCcHHHHHHHHHHhCCCHHHHHhcCCCCCCCCCCcchhHHHHHHHHHhCCCCeEEEEecccCCCe
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCceeeecccccccCCCcccccCCceeeeecCCeeeeCCC-CCe--eeeCCeeEEEEEEeecCCCCCCCCeEEEE
Q 003072 81 KQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGSD-GKS--HWIGGEDIKAVAYDIPIPGYKTKTTINLR 157 (850)
Q Consensus 81 ~Q~I~dG~Q~E~pd~Wl~~gnpwei~r~~~~~~V~f~G~~~~~~~-G~~--~w~~~~~v~A~~yd~pi~Gy~~~~~~~LR 157 (850)
+|+|++|||+|.||+|+..++|||++|++.+++|+|+|+++...+ |+. +|++++.|+|+|||+|||||++.++|+||
T Consensus 140 ~Q~i~~G~Q~E~pd~Wl~~~~pwe~~r~~~~~~V~f~G~~~~~~~~G~~~~~w~~~~~v~avpyDvpi~Gy~~~~~n~LR 219 (797)
T cd04300 140 KQKIVDGYQVELPDNWLRYGNPWEIRRPDVAVPVRFGGRVEHYEDGGRLRVRWVDGETVLAVPYDTPIPGYGTNTVNTLR 219 (797)
T ss_pred EEEEECCEEEecCCCccCCCCCceEecCCcEEEEEECCEEEEeecCCcceeeecCcceEEeeecceeecCCCCCceEEEE
Confidence 999999999999999999999999999999999999999975433 643 49999999999999999999999999999
Q ss_pred EEEecCCCCcccccccCCCchhHHHHHhhhcccccceeccCCCccccchhhhhhhhhhhhchHHHHHHHHHHhcCccccc
Q 003072 158 LWSTMVPSEDFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNW 237 (850)
Q Consensus 158 LW~a~v~~~~fdl~~fn~g~~~~a~~~~~~~~~IT~~LYp~D~~~~GkelRLkQEyflg~aslqdiirr~~~~~gG~~~l 237 (850)
||+++ +...|||++||.|+|.+++++++.+|+||++|||+|++++||+|||||||||||||+|||||+|++++ ..+
T Consensus 220 LW~a~-~~~~~dl~~fn~gdy~~a~~~~~~~~~It~~LYp~Ds~~~Gk~lRL~Qeyfl~sag~qdilr~~~~~~---~~~ 295 (797)
T cd04300 220 LWSAE-ASEEFDLDAFNRGDYIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKTH---GPL 295 (797)
T ss_pred EEEee-CCCCcCHHHhcCCchhhHHhhHHHhhhhhcccCCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHhC---CCh
Confidence 99999 45679999999999999999999999999999999999999999999999999999999999999998 478
Q ss_pred ccCCCCceEEeCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHccceeecccCCCCcccccCCHHHHHHhchhHHHHHHHH
Q 003072 238 EEFPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMI 317 (850)
Q Consensus 238 ~~l~~~~~ihlNDtHpalai~ElmR~Lid~~gl~~~eAw~i~~~~~~fTnHT~vpealEkw~~~l~~~lLpr~~~II~~i 317 (850)
+.||++++|||||||||||+|||||+|||++|++|++||+||+++|+||||||||||||+||++||+++||||++||++|
T Consensus 296 ~~l~~~~~ihlNDtHpalai~ElmR~L~d~~gl~w~~Aw~i~~~~~~yTnHT~lpealE~wp~~l~~~~lpr~~~II~~I 375 (797)
T cd04300 296 SEFPDKVAIQLNDTHPALAIPELMRILVDEEGLDWDEAWDITTKTFAYTNHTLLPEALEKWPVDLFERLLPRHLEIIYEI 375 (797)
T ss_pred hhCCCceEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhheeeecCCCchHHhCccCHHHHHHHChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhCCCCchhhHHHHhhhccccccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhcccc
Q 003072 318 DEELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGV 397 (850)
Q Consensus 318 n~~f~~~~~~~~~~~~~~~~~~~~~~l~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (850)
|++|+..+..++|. +.+++.+|+||+
T Consensus 376 n~~~~~~~~~~~~~-----~~~~~~~l~ii~------------------------------------------------- 401 (797)
T cd04300 376 NRRFLEEVRAKYPG-----DEDRIRRMSIIE------------------------------------------------- 401 (797)
T ss_pred HHHHHHHHHHhcCC-----CHHHHHhhcccc-------------------------------------------------
Confidence 99999999999998 999999999987
Q ss_pred cccccCCCCCCcccccccCCCCCCccchhhhhhhhhHHHHHhhhhcCCCCCeeeeeeeeeccCcchhHHHHHHHHHHhHh
Q 003072 398 LEEESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNE 477 (850)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~Ma~LAl~~S~~vNGVS~lH~ei~k~~ 477 (850)
+ +++++||||+||+++||+|||||+||++|+|++
T Consensus 402 -------------------------------------------~---~~~~~v~Ma~LAi~~S~~vNGVS~lH~ei~k~~ 435 (797)
T cd04300 402 -------------------------------------------E---GGEKQVRMAHLAIVGSHSVNGVAALHSELLKET 435 (797)
T ss_pred -------------------------------------------c---CCCCEEehHHHHHhcCcchhhhHHHHHHHHHHh
Confidence 2 223579999999999999999999999999999
Q ss_pred hhhhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHH
Q 003072 478 VFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKV 557 (850)
Q Consensus 478 ~f~~f~~l~P~kf~niTNGV~~rrWl~~~Np~L~~Li~~~iG~~~W~~~~~~l~~l~~~~~D~~f~~~w~~vK~~~K~~L 557 (850)
+|++|+++||+||+|||||||+|||+.+|||+|++||+++||+ +|++++++|++|.++++|++|+++|+++|+++|.+|
T Consensus 436 ~~~df~~l~P~kf~n~TNGVt~rrWl~~~np~L~~Li~~~ig~-~W~~d~~~l~~l~~~~~D~~f~~~l~~~K~~nK~~L 514 (797)
T cd04300 436 VFKDFYELYPEKFNNKTNGITPRRWLLQANPGLSALITETIGD-DWVTDLDQLKKLEPFADDPAFLKEFRAIKQANKERL 514 (797)
T ss_pred hHHHHHhhCCCccCCcCCCCCcchhhhhcCHHHHHHHHHhcCc-hhhhChHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999997 899999999999999999999999999999999999
Q ss_pred HHHHHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHH
Q 003072 558 VSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVK 637 (850)
Q Consensus 558 ~~~i~~~~g~~ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk 637 (850)
++||++++|+.+||++|||+|||||||||||+||+|+|++||.+|++ +|.. +++||||||||||||+|.+||+|||
T Consensus 515 ~~~i~~~~g~~ldp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~-~p~~---~~~P~~~IFaGKAaP~y~~aK~iIk 590 (797)
T cd04300 515 AAYIKKTTGVEVDPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKE-NPNA---DIVPRTFIFGGKAAPGYYMAKLIIK 590 (797)
T ss_pred HHHHHHHhCCccCCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHh-CCCc---CCCCeEEEEeccCCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997 6553 3789999999999999999999999
Q ss_pred HHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccc
Q 003072 638 FITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQ 717 (850)
Q Consensus 638 ~I~~va~~vn~Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e 717 (850)
+|++||++||+||+++++|||||||||+||+||+||||||||+||||||+||||||||||||||||||||||||||||++
T Consensus 591 lI~~va~~in~Dp~v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~e 670 (797)
T cd04300 591 LINAVADVVNNDPDVGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIAE 670 (797)
T ss_pred HHHHHHHHhccChhcCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeeccchhhhhhhhhhcCC--CCCCCChhHHHHHHHHhcCCCCccc---HHHHHHHhccCCCCCCCccccccc
Q 003072 718 EVGEENFFLFGARAHEIAGLRKERSE--GKFVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGK 792 (850)
Q Consensus 718 ~~g~eN~f~fG~~~~EV~~l~~~~~~--~~~~~~~~l~~v~~~i~~g~f~~~~---~~~l~~~L~~~~~~~~~D~y~vl~ 792 (850)
+||++|+|+||++++||.++|+++.+ ..|..+|.+++|+|+|.+|+|++.+ |++||++|+.+ +|+|||++
T Consensus 671 ~vG~eN~fiFG~~~~ev~~~~~~~y~~~~~y~~~~~l~~v~d~i~~g~f~~~~~~~f~~i~~~l~~~-----~D~y~vl~ 745 (797)
T cd04300 671 EVGEENIFIFGLTAEEVEALRANGYYPADYYEADPELRRVLDQIASGFFSPGDPGEFRPLVDSLLNG-----NDEYLVLA 745 (797)
T ss_pred HhCcCcEEEeCCCHHHHHHHHHcCCChHhhccCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHccC-----CCeeEeec
Confidence 99999999999999999999988722 3478999999999999999997543 99999999976 89999999
Q ss_pred chhhHHHHHHHHHHHhcCHhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcc
Q 003072 793 DFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNI 844 (850)
Q Consensus 793 DF~sY~~aq~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~~iw~i 844 (850)
||+||++||++|+++|.|+++|+||||+|||+||+|||||||+|||++||++
T Consensus 746 Df~~Y~~~q~~v~~~Y~d~~~W~~~~i~Nia~~G~FSsDRtI~eYa~~IW~~ 797 (797)
T cd04300 746 DFESYVDAQEKVDALYRDQEEWARKSILNIARSGKFSSDRTIREYAEDIWNV 797 (797)
T ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHHHHHccCCcCCcccHHHHHHHhhCc
Confidence 9999999999999999999999999999999999999999999999999985
No 5
>PRK14986 glycogen phosphorylase; Provisional
Probab=100.00 E-value=1.3e-244 Score=2088.13 Aligned_cols=733 Identities=47% Similarity=0.839 Sum_probs=708.6
Q ss_pred CcccCCcchHHHHHhcCcHHHHHHHHHHhCCCHHHHHccCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcce
Q 003072 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLF 80 (850)
Q Consensus 1 ~Efl~Gr~l~n~l~nlgl~~~~~eal~~lg~~le~~~~~E~da~LgnGGLGrLAgc~ldS~a~L~~P~~G~GlrY~yG~F 80 (850)
|||||||+|.|||+|||+++++++||++||+++|+++++|+||||||||||||||||||||||||+|++||||||+||||
T Consensus 77 ~EfL~Gr~l~nnl~nlg~~~~~~~al~~lg~~l~~l~~~E~Da~LGnGGLGrLAac~ldS~A~LglP~~G~Gi~Y~yG~F 156 (815)
T PRK14986 77 MEFLIGRTLSNALLSLGIYDDVQGALEAMGLDLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMF 156 (815)
T ss_pred hhhhccHHHHHHHHhcCcHHHHHHHHHHcCCCHHHHHhcCCCCCCCCcchHHHHHHHHHHHHhCCCCeEEEEecccCCCe
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCceeeecccccccCCCcccccCCceeeeecCCeeeeCCCCC-eeeeCCeeEEEEEEeecCCCCCCCCeEEEEEE
Q 003072 81 KQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGSDGK-SHWIGGEDIKAVAYDIPIPGYKTKTTINLRLW 159 (850)
Q Consensus 81 ~Q~I~dG~Q~E~pd~Wl~~gnpwei~r~~~~~~V~f~G~~~~~~~G~-~~w~~~~~v~A~~yd~pi~Gy~~~~~~~LRLW 159 (850)
+|+|.+|||+|.||+|+..++|||++|++.+++|+|+|+++.. |. .+|+++++|+|+|||+|||||+|+++|+||||
T Consensus 157 ~Q~I~dG~Q~E~pd~w~~~~~pwe~~r~~~~~~V~f~g~~~~~--g~~~~w~~~~~v~avpyD~pipgy~t~~vn~lRLW 234 (815)
T PRK14986 157 KQNIVNGRQKESPDYWLEYGNPWEFKRHNTRYKVRFGGRIQQE--GKKTRWIETEEILAVAYDQIIPGYDTDATNTLRLW 234 (815)
T ss_pred EEEEECCEEEEcCCCccCCCCceeEecCCcEEEEEeCCEEEec--CceeEeeCCeeEEEEeCCccccCCCCCceEEEEEE
Confidence 9999999999999999999999999999999999999999753 53 34999999999999999999999999999999
Q ss_pred EecCCCCcccccccCCCchhHHHHHhhhcccccceeccCCCccccchhhhhhhhhhhhchHHHHHHHHHHhcCccccccc
Q 003072 160 STMVPSEDFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEE 239 (850)
Q Consensus 160 ~a~v~~~~fdl~~fn~g~~~~a~~~~~~~~~IT~~LYp~D~~~~GkelRLkQEyflg~aslqdiirr~~~~~gG~~~l~~ 239 (850)
+++ +.++||+..||.|+|..++.++..+|+||++|||+|++++||+|||||||||||||+|||||||++.+ ++|+.
T Consensus 235 ~a~-~~~~fd~~~fn~g~y~~a~~~~n~~e~Is~~LYp~D~~y~Gk~lRLkQEyfl~~agv~di~r~~~~~~---~~l~~ 310 (815)
T PRK14986 235 SAQ-ASSEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSATVQDILSRHYQLH---KTYDN 310 (815)
T ss_pred Eee-cCcccCHhhcccccHHHHhhccchhhccccccCCCCCCcccHHHHHHHHHHhhhHHHHHHHHHHHHhC---CCHhh
Confidence 999 56789999999999999999999999999999999999999999999999999999999999999987 68999
Q ss_pred CCCCceEEeCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHccceeecccCCCCcccccCCHHHHHHhchhHHHHHHHHhH
Q 003072 240 FPEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDE 319 (850)
Q Consensus 240 l~~~~~ihlNDtHpalai~ElmR~Lid~~gl~~~eAw~i~~~~~~fTnHT~vpealEkw~~~l~~~lLpr~~~II~~in~ 319 (850)
||++++||||||||||++|||||+|||++|++|++||++|+++|+||||||||||||+||++||+++||||++||++||+
T Consensus 311 l~~~v~ihlNDtHpa~~i~ElmR~L~d~~gl~~~eA~~iv~~~~~fTnHT~lpealE~w~~~l~~~~lpr~l~Ii~eIn~ 390 (815)
T PRK14986 311 LADKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEIND 390 (815)
T ss_pred CCcccEEEecCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhEEeecccCChHHhCcCCHHHHHHHccHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCchhhHHHHhhhccccccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhcccccc
Q 003072 320 ELVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLE 399 (850)
Q Consensus 320 ~f~~~~~~~~~~~~~~~~~~~~~~l~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (850)
+|+..++++||+ +.+++.+++||+
T Consensus 391 ~fl~~~~~~~~~-----~~~~~~~~sii~--------------------------------------------------- 414 (815)
T PRK14986 391 YFLKTLQEQYPN-----DTDLLGRASIID--------------------------------------------------- 414 (815)
T ss_pred HHHHHHHHhCCC-----cHHHHhhhhccc---------------------------------------------------
Confidence 999999999998 899999999987
Q ss_pred cccCCCCCCcccccccCCCCCCccchhhhhhhhhHHHHHhhhhcCCCCCeeeeeeeeeccCcchhHHHHHHHHHHhHhhh
Q 003072 400 EESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVF 479 (850)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~Ma~LAl~~S~~vNGVS~lH~ei~k~~~f 479 (850)
+ +++++||||+||+++||+|||||+||++|+++.||
T Consensus 415 -----------------------------------------~---~~~~~v~Ma~LAl~~S~~vNGVS~lH~evl~~~~f 450 (815)
T PRK14986 415 -----------------------------------------E---SNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLF 450 (815)
T ss_pred -----------------------------------------c---CCCCEEeeHHHHhhccchhhHHHHHHHHHHHHHHH
Confidence 1 11247999999999999999999999999988999
Q ss_pred hhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 003072 480 NEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVS 559 (850)
Q Consensus 480 ~~f~~l~P~kf~niTNGV~~rrWl~~~Np~L~~Li~~~iG~~~W~~~~~~l~~l~~~~~D~~f~~~w~~vK~~~K~~L~~ 559 (850)
++|+++||+||.|||||||+|||+.+|||+|++||+++||+ +|.+++++|++|+++.+|++|+++|+++|+++|.+|++
T Consensus 451 ~df~~l~P~kf~niTNGV~~rrWl~~~np~L~~Li~~~ig~-~W~~d~~~l~~l~~~~~d~~f~~~l~~vk~~nK~~L~~ 529 (815)
T PRK14986 451 ADFAKIFPGRFCNVTNGVTPRRWLALANPSLSAVLDEHIGR-TWRTDLSQLSELKQHCDYPMVNHAVRQAKLENKKRLAE 529 (815)
T ss_pred HHHHhhCCCcccccCCCCChhhHhhhcCHHHHHHHHHhcCc-hhhhChHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred HHHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHH
Q 003072 560 FIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFI 639 (850)
Q Consensus 560 ~i~~~~g~~ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I 639 (850)
||++++|+.+||++|||+|||||||||||+||||+|++||.+|++ +|.. +++||||||||||||+|.+||+|||+|
T Consensus 530 ~i~~~~g~~ldp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~-~p~~---~~~P~~~IFaGKAaP~y~~aK~iIk~I 605 (815)
T PRK14986 530 YIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKA-DPDA---KWVPRVNIFAGKAASAYYMAKHIIHLI 605 (815)
T ss_pred HHHHHhCCccCcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHh-CCCc---CCCCeEEEEeecCCCCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997 6543 378999999999999999999999999
Q ss_pred HHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccc
Q 003072 640 TDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEV 719 (850)
Q Consensus 640 ~~va~~vn~Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~ 719 (850)
++||++||+||+++++|||||||||+|++||+||||||||+||||||+||||||||||||||+|||||||||||||+++|
T Consensus 606 ~~va~~in~Dp~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~e~v 685 (815)
T PRK14986 606 NDVAKVINNDPQIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMLEHV 685 (815)
T ss_pred HHHHHHhccChhhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeccchhhhhhhhhhc--CCCCCCCChhHHHHHHHHhcCCCCccc---HHHHHHHhccCCCCCCCcccccccch
Q 003072 720 GEENFFLFGARAHEIAGLRKER--SEGKFVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEGNEGFGQADYFLVGKDF 794 (850)
Q Consensus 720 g~eN~f~fG~~~~EV~~l~~~~--~~~~~~~~~~l~~v~~~i~~g~f~~~~---~~~l~~~L~~~~~~~~~D~y~vl~DF 794 (850)
|++|+|+||++++||..+|.++ +...|..+|.|++++|+|.+|+|++.+ |++||++|+.+ +|+|||++||
T Consensus 686 G~eN~~~fG~~~~ev~~~~~~~Y~~~~~y~~~~~l~~~~d~i~~g~f~~~~~~~f~~i~~~l~~~-----~D~y~vl~Df 760 (815)
T PRK14986 686 GEENIFIFGNTAEEVEALRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEEPGRYRDLVDSLINF-----GDHYQVLADY 760 (815)
T ss_pred CCCcEEEeCCCHHHHHHHHHcCCChhhhccCCHHHHHHHHHHhcCCCCCCCchhHHHHHHHhccC-----CCeeEeeccH
Confidence 9999999999999999999876 223377899999999999999998764 99999999876 8999999999
Q ss_pred hhHHHHHHHHHHHhcCHhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcccccCC
Q 003072 795 PSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIPVEL 849 (850)
Q Consensus 795 ~sY~~aq~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~~iw~i~p~~~ 849 (850)
+||++||++|+++|.|+++|+||||.|||+||+|||||||+|||++||+++||+.
T Consensus 761 ~sY~~aq~~v~~~y~d~~~W~~~~i~Nia~~G~FSsDRtI~~Ya~~IW~~~p~~~ 815 (815)
T PRK14986 761 RSYVDCQDKVDELYRNQEEWTRKAMLNIANMGYFSSDRTIKEYADEIWHIDPVRL 815 (815)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCCCCcCCchhHHHHHHHhhCCCccCC
Confidence 9999999999999999999999999999999999999999999999999999874
No 6
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=100.00 E-value=1.6e-240 Score=2033.10 Aligned_cols=706 Identities=52% Similarity=0.899 Sum_probs=637.5
Q ss_pred HHHHhCCCHHHHHccCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcceeEEecCCceeeecccccccCCCcc
Q 003072 25 ALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRITKDGQEEVAEDWLELGNPWE 104 (850)
Q Consensus 25 al~~lg~~le~~~~~E~da~LgnGGLGrLAgc~ldS~a~L~~P~~G~GlrY~yG~F~Q~I~dG~Q~E~pd~Wl~~gnpwe 104 (850)
||++||+++++|+++|+||||||||||||||||||||||||+|++||||||+||+|+|+|.||+|+|.||+||..|||||
T Consensus 1 Al~~lg~~~~~l~~~E~da~LGNGGLGRLAacfldSlAtl~~p~~GygirY~yG~F~Q~i~dG~QvE~pd~Wl~~g~pWe 80 (713)
T PF00343_consen 1 ALKELGFDLEELEEQEPDAGLGNGGLGRLAACFLDSLATLGIPAYGYGIRYEYGLFKQKIVDGWQVELPDNWLRYGNPWE 80 (713)
T ss_dssp HHHHTT--HHHHHTTS--EEESSSHHHHHHHHHHHHHHHTT-EEEEEEE--SCESEEEEEETTEEEEEEEBTTTTG-TTS
T ss_pred ChhHhCCCHHHHHhhCcCccccCcccchhHHHHHHHHHhCCCCceEEEeeecCCCceeEeecCCcccCCCCccCCCCceE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceeeeecCCeeeeCCCCCe-eeeCCeeEEEEEEeecCCCCCCCCeEEEEEEEecCCCCcccccccCCCchhHHHH
Q 003072 105 IERNDVSYPVKFYGKIVPGSDGKS-HWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKAAE 183 (850)
Q Consensus 105 i~r~~~~~~V~f~G~~~~~~~G~~-~w~~~~~v~A~~yd~pi~Gy~~~~~~~LRLW~a~v~~~~fdl~~fn~g~~~~a~~ 183 (850)
++|++.+|+|+|+|+++ +.+|+. +|+++++|+|+|||+|||||+|++||+||||+|+ ++++|||..||.|+|.+|++
T Consensus 81 ~~r~~~~~~V~f~G~v~-~~~~~~~~~~~~~~v~av~yD~pi~Gy~~~~vn~LRLw~a~-~~~~fd~~~fn~gdy~~a~~ 158 (713)
T PF00343_consen 81 IRRPDESYEVKFGGRVE-DDGGRKVRWEDGETVLAVPYDMPIPGYRTKTVNTLRLWSAE-PSEEFDLESFNRGDYIKAVE 158 (713)
T ss_dssp EEEGGGEEEEEESEEEE--EETTEEEEESCEEEEEEEEEEEEE-SSSS-EEEEEEEEEE-ESSSTTHHHHHTTCHHHHHH
T ss_pred EecCCceEEEeccceEE-ecCCCcccccCCeEEEEEecCceeecCCCCceEEEEEeccC-CCcccChhhcCCCcHHHHHH
Confidence 99999999999999998 444554 5999999999999999999999999999999999 78899999999999999999
Q ss_pred HhhhcccccceeccCCCccccchhhhhhhhhhhhchHHHHHHHHHHhcCcccccccCCCCceEEeCCCChhhhHHHHHHH
Q 003072 184 ALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRI 263 (850)
Q Consensus 184 ~~~~~~~IT~~LYp~D~~~~GkelRLkQEyflg~aslqdiirr~~~~~gG~~~l~~l~~~~~ihlNDtHpalai~ElmR~ 263 (850)
++..+|+||++|||+|++++||+|||||||||||||||||||||++.+ .+|+.||++++||||||||||++|||||+
T Consensus 159 ~~~~~e~is~vLYP~d~~~~Gk~LRLkQqyf~vsa~lqdiir~~~~~~---~~~~~~~~~~~ihlNdtHpa~ai~ElmR~ 235 (713)
T PF00343_consen 159 EKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKKSH---GDLREFPDKVVIHLNDTHPAFAIPELMRI 235 (713)
T ss_dssp HHHHHHGGGTBSS-SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---CCGGGHHHHEEEEEESSTTTTHHHHHHHH
T ss_pred HHHHhhceeeecCCCCccccchhhhhhhHhhhhhhHHHHHHHHHHHhC---CChHHCCcceEEeecCCccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 69999999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHccceeecccCCCCcccccCCHHHHHHhchhHHHHHHHHhHHHHHHHHHhhCCCCchhhHHHHhh
Q 003072 264 LIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLKE 343 (850)
Q Consensus 264 Lid~~gl~~~eAw~i~~~~~~fTnHT~vpealEkw~~~l~~~lLpr~~~II~~in~~f~~~~~~~~~~~~~~~~~~~~~~ 343 (850)
|||++||+|++||+||+++|+||||||||||||+||++||+++||||+|||++||++|+..+..++|+ +.+++.+
T Consensus 236 L~de~gl~~~eA~eiv~~~~~fTnHT~vpealE~wp~~l~~~~Lpr~~~ii~ein~~f~~~~~~~~~~-----d~~~~~~ 310 (713)
T PF00343_consen 236 LMDEEGLSWDEAWEIVRKTFAFTNHTPVPEALEKWPVDLFERYLPRHLEIIYEINRRFLDELRRKYPG-----DEDQIRR 310 (713)
T ss_dssp HHHTT---HHHHHHHHHHHEEEEE--SSGGGS-EEEHHHHHHHSHHHHHHHHHHHHHHHHHHHHHSTT------HHHHHH
T ss_pred HHHHcCCCHHHHHHHHHhceeeeccccccccccccCHHHHHHHChHHHHHHHHHhHHHHHHHHHHhcC-----cchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred hccccccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhcccccccccCCCCCCcccccccCCCCCCcc
Q 003072 344 TRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDE 423 (850)
Q Consensus 344 l~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (850)
|++++
T Consensus 311 l~ii~--------------------------------------------------------------------------- 315 (713)
T PF00343_consen 311 LSIIE--------------------------------------------------------------------------- 315 (713)
T ss_dssp HSSEE---------------------------------------------------------------------------
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 99987
Q ss_pred chhhhhhhhhHHHHHhhhhcCCCCCeeeeeeeeeccCcchhHHHHHHHHHHhHhhhhhhhhhcCCCcccccccccccccc
Q 003072 424 ELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWI 503 (850)
Q Consensus 424 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~Ma~LAl~~S~~vNGVS~lH~ei~k~~~f~~f~~l~P~kf~niTNGV~~rrWl 503 (850)
+ ++++.||||+||+++||+|||||+|||+|+|+++|++|+++||++|+|||||||+|||+
T Consensus 316 -----------------~---~~~~~~~Ma~LAl~~S~~vNGVS~LH~ev~k~~~f~~f~~l~P~kf~nvTNGVh~rrWl 375 (713)
T PF00343_consen 316 -----------------E---GNSKRFRMANLALRGSHSVNGVSKLHGEVLKQMVFKDFYELWPEKFGNVTNGVHPRRWL 375 (713)
T ss_dssp -----------------T---SSSCEEEHHHHHHHCESEEEESSHHHHHHHHHTTTHHHHHHSGGGEEE----B-TCCCC
T ss_pred -----------------c---cchhhcchhHHHHHhcccccchHHHHHHHHHHHHhhhhhhcCCceeeccccCccCcccc
Confidence 2 33478999999999999999999999999999999999999999999999999999999
Q ss_pred cccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCccccccccccc
Q 003072 504 RFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIH 583 (850)
Q Consensus 504 ~~~Np~L~~Li~~~iG~~~W~~~~~~l~~l~~~~~D~~f~~~w~~vK~~~K~~L~~~i~~~~g~~ldpd~lfd~~~kR~h 583 (850)
+.|||+|++||+++||+ +|.+|++.|++|.++++|+.|+++|+++|+++|.+|+++|++++|+.+||++|||+||||||
T Consensus 376 ~~~nP~L~~L~~~~iG~-~W~~d~~~l~~l~~~~dd~~~~~~~~~vK~~~K~rl~~~i~~~~~~~ldp~slfdv~~rR~h 454 (713)
T PF00343_consen 376 SQANPELSELITEYIGD-DWRTDLEQLEKLEKFADDEEFQEELREVKQENKERLAEYIKKRTGVELDPDSLFDVQARRFH 454 (713)
T ss_dssp CCTSHHHHHHHHHHHTS-GGGCSGGGGGGGGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEEEEES-SC
T ss_pred cccCHHHHHHHHHHhcc-ccccCHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhcc
Confidence 99999999999999996 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecC
Q 003072 584 EYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPD 663 (850)
Q Consensus 584 eYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~i~~~lkVvFlen 663 (850)
|||||+||+|++++||.+||+ +|.. +.+||||||||||||+|.+||+|||+|++||++||+||+++++||||||||
T Consensus 455 eYKRq~LniL~ii~~y~rik~-~p~~---~~~Pv~~IFaGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~~~lkVvFlen 530 (713)
T PF00343_consen 455 EYKRQLLNILHIIDRYNRIKN-NPNK---KIRPVQFIFAGKAHPGDYMGKEIIKLINNVAEVINNDPEVGDRLKVVFLEN 530 (713)
T ss_dssp CCCTHHHHHHHHHHHHHHHHH-STTS---CCS-EEEEEE----TT-HHHHHHHHHHHHHHHHHCT-TTTCCGEEEEEETT
T ss_pred cccccCcccccHHHHHHHHHh-cccC---CCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHHhcChhhccceeEEeecC
Confidence 999999999999999999998 6553 378999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeeccchhhhhhhhhhcCC
Q 003072 664 YNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSE 743 (850)
Q Consensus 664 Y~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG~~~~EV~~l~~~~~~ 743 (850)
|||++||+||||||||+||||||+||||||||||||||+|||||||||||||.+++|++|+|+||++++||.+++.++ |
T Consensus 531 YdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~niEi~e~vG~eN~fiFG~~~~ev~~~~~~g-Y 609 (713)
T PF00343_consen 531 YDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGWNIEIAEAVGEENIFIFGLTAEEVEELRKNG-Y 609 (713)
T ss_dssp -SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTCHHHHHHHH-GGGSEEES-BHHHHHHHHHHT--
T ss_pred CcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccchhHHHHHhcCCCcEEEcCCCHHHHHHHHhcC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999885 3
Q ss_pred C---CCCCChhHHHHHHHHhcCCCCc---ccHHHHHHHhccCCCCCCCcccccccchhhHHHHHHHHHHHhcCHhHHHHH
Q 003072 744 G---KFVPDARFEEVKKFVKSGVFGS---YNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRM 817 (850)
Q Consensus 744 ~---~~~~~~~l~~v~~~i~~g~f~~---~~~~~l~~~L~~~~~~~~~D~y~vl~DF~sY~~aq~~v~~~Y~d~~~W~~~ 817 (850)
+ .|..+|++++|+|+|.+|.|++ ..|++||++++.+ +|+|||++||+||++||++|+++|.|+++|++|
T Consensus 610 ~~~~~y~~~~~l~~vld~i~~g~f~~~~~~~f~~i~~~~~~~-----~D~y~vl~Df~~Y~~~q~~v~~~Y~d~~~W~~~ 684 (713)
T PF00343_consen 610 NPREYYENDPELKRVLDQIISGFFSPGDPDEFKPIYDSLLMY-----NDEYLVLADFESYVEAQEKVDKAYRDPKKWNKM 684 (713)
T ss_dssp HHHHHHHHSHHHHHHHHHHHHTTTTTTSTTTTHHHHHHCHHH-----TTTT-HHHHHHHHHHHHHHHHHHHCSHHHHHHH
T ss_pred CcccccccCHHHHHHHHHHhcCCCCCCCchhHHHHHhCcCCC-----CCcchhhhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3 3678999999999999999987 3599999997655 899999999999999999999999999999999
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHhcccc
Q 003072 818 SIMNTAGSSKFSSDRTIQEYARDIWNIIP 846 (850)
Q Consensus 818 ~i~niA~sg~FSSDRtI~eYa~~iw~i~p 846 (850)
||+|||+||+|||||||+|||++||+|+|
T Consensus 685 ~i~Nia~~g~FssDrtI~~Ya~~IW~~~p 713 (713)
T PF00343_consen 685 SILNIARSGKFSSDRTIREYAEDIWNVKP 713 (713)
T ss_dssp HHHHHHCGGGGBHHHHHHHHHHHTTTS--
T ss_pred HHHHHHhcCCCCchHHHHHHHHHhhCCCC
Confidence 99999999999999999999999999988
No 7
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.7e-201 Score=1710.81 Aligned_cols=674 Identities=47% Similarity=0.769 Sum_probs=632.1
Q ss_pred CcccCCcchHHHHHhcCcHHHHHHHHHHhCCCHHHHHccCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcce
Q 003072 1 MEFLQGRALLNAIGNLGLTGAYAEALSKLGQSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLF 80 (850)
Q Consensus 1 ~Efl~Gr~l~n~l~nlgl~~~~~eal~~lg~~le~~~~~E~da~LgnGGLGrLAgc~ldS~a~L~~P~~G~GlrY~yG~F 80 (850)
||||+||+|.|||+|||+.+.++++|+++|+++.++...|+|+++| ||||||||||||||||||+|++||||||+||||
T Consensus 69 ~efL~grl~~~~l~n~g~~~~~~~~l~~~~~~~~e~~~~e~~p~lg-GGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF 147 (750)
T COG0058 69 MEFLIGRLLGNNLWNLGIYDDVQEALKELGYFLMEFGEHESDPGLG-GGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYF 147 (750)
T ss_pred HHHHHHHhhhcchhhhcchHHHHhhHHhhhccHHHHhhcccCcccc-ccHHHHHHhHHHHHHhcCCCceEEEeeecCCce
Confidence 7999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred eEEecCCceeeecccccccCCCcccccCCceeeeecCCeeeeCCCCCeeeeCCeeEEEEEEeecCCCCCCCCeEEEEEEE
Q 003072 81 KQRITKDGQEEVAEDWLELGNPWEIERNDVSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWS 160 (850)
Q Consensus 81 ~Q~I~dG~Q~E~pd~Wl~~gnpwei~r~~~~~~V~f~G~~~~~~~G~~~w~~~~~v~A~~yd~pi~Gy~~~~~~~LRLW~ 160 (850)
+|++.||||+|.|+.|+..+||||+.|+. + |++||+||+||++ ++|+||||+
T Consensus 148 ~Q~~~dG~Q~E~p~~w~~~~~pwe~~r~~---------------~------------a~~~d~~V~g~~~-~~~~lrlW~ 199 (750)
T COG0058 148 RQSDVDGWQVELPDEWLKYGNPWEFLRDA---------------E------------GVPYDVPVPGYDN-RVVTLRLWQ 199 (750)
T ss_pred eeeccCCceEecchhhhccCCcceeeccc---------------C------------CceeeeeEEeccC-cEEEEEEEE
Confidence 99988999999999999999999987641 1 4799999999999 999999999
Q ss_pred ecCCCCcccccccCCCchhHHHHHhhhcccccceeccCCCccccchhhhhhhhhhhhchHHHHHHHHHHhcCcccccccC
Q 003072 161 TMVPSEDFDLSAFNAGDHTKAAEALTNAEKICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEF 240 (850)
Q Consensus 161 a~v~~~~fdl~~fn~g~~~~a~~~~~~~~~IT~~LYp~D~~~~GkelRLkQEyflg~aslqdiirr~~~~~gG~~~l~~l 240 (850)
+++++.+|+|..||.| ++++.+|+||++|||+|+ ++|||||||||||||+|||++++..+++ +++.+
T Consensus 200 a~~~~~~~~l~~~n~~------e~~~~~~~iT~~LYp~Ds----~elRl~Qeyfl~~agvq~I~~~~~~~~~---~~~~~ 266 (750)
T COG0058 200 AQVGRVPLYLLDFNVG------ENKNDARNITRVLYPGDS----KELRLKQEYFLGSAGVQDILARGHLEHH---DLDVL 266 (750)
T ss_pred EecCccceEeecCCCc------ccchhhhhHHhhcCCCCc----HHHHHhhhheeeeHHHHHHHHHhhhccc---cccch
Confidence 9988878888888888 346789999999999998 8999999999999999999999655542 66666
Q ss_pred CCCceEEeCCCChhhhHHHHHHHHHHhcCCCHHHHHHHHccceeecccCCCCcccccCCHHHHHHhchhHHHHHHHHhHH
Q 003072 241 PEKVAVQMNDTHPTLCIPELIRILIDLKGLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEE 320 (850)
Q Consensus 241 ~~~~~ihlNDtHpalai~ElmR~Lid~~gl~~~eAw~i~~~~~~fTnHT~vpealEkw~~~l~~~lLpr~~~II~~in~~ 320 (850)
+ +||||||||||+|||||+|+|++|++|++||++|+++|+||||||||||||+||++||+++||||++||++||.+
T Consensus 267 ~----~~lNdtHpa~~i~ElmRll~d~~g~~~~~A~~~~~~~~~yTnHTplpeale~wp~~l~~~~lpr~~~ii~~in~~ 342 (750)
T COG0058 267 A----DHLNDTHPALAIPELMRLLIDEEGLSWDEAWEIVRKTFVYTNHTPLPEALETWPVELFKKLLPRHLQIIYEINAR 342 (750)
T ss_pred h----hhhcCCChhHhHHHHHHHHHHHhcCCHHHHHHHHhheeeeecCCCchhhhccCCHHHHHHHhhhhhhhHHHHHhh
Confidence 5 469999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCchhhHHHHhhhccccccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhccccccc
Q 003072 321 LVHTIVSEYGTADPDLLEKRLKETRILENVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEE 400 (850)
Q Consensus 321 f~~~~~~~~~~~~~~~~~~~~~~l~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (850)
|+..++..+|+ + ++.++++|+
T Consensus 343 ~l~~~~~~~~~-----~--~~~~~~~i~---------------------------------------------------- 363 (750)
T COG0058 343 FLPEVRLLYLG-----D--LIRRGSPIE---------------------------------------------------- 363 (750)
T ss_pred hhHHHHhhccc-----c--ccccCCccc----------------------------------------------------
Confidence 99999888887 3 444444433
Q ss_pred ccCCCCCCcccccccCCCCCCccchhhhhhhhhHHHHHhhhhcCCCCCeeeeeeeeeccCcchhHHHHHHHHHHhHhhhh
Q 003072 401 ESTDVVPDDELENCDEEGGPVDEELESEQEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFN 480 (850)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~Ma~LAl~~S~~vNGVS~lH~ei~k~~~f~ 480 (850)
.||||+||+++||+|||||+||+||+|+|.|+
T Consensus 364 ------------------------------------------------~v~Ma~lal~~S~~vNGVsklH~el~k~~~~~ 395 (750)
T COG0058 364 ------------------------------------------------EVNMAVLALVGSHSVNGVSKLHSELSKKMWFA 395 (750)
T ss_pred ------------------------------------------------ceehhhhhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 29999999999999999999999999999999
Q ss_pred hhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 003072 481 EFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSF 560 (850)
Q Consensus 481 ~f~~l~P~kf~niTNGV~~rrWl~~~Np~L~~Li~~~iG~~~W~~~~~~l~~l~~~~~D~~f~~~w~~vK~~~K~~L~~~ 560 (850)
+|+++||+||+|||||||+|||+..|||+|++++++.+|. .|..+++.+.++..+++|+.|++.|+.+|+++|.+|+++
T Consensus 396 ~~~~~~p~~i~nvTNGIt~rrWl~~~n~~L~~~~~~~ig~-~W~~~~~~l~~l~~~a~~~~~~e~i~~iK~~nk~~La~~ 474 (750)
T COG0058 396 DFHGLYPEKINNVTNGITPRRWLAPANPGLADLLDEKIGD-EWLNDLDILDELLWFADDKAFRELIAEIKRENKKRLAEE 474 (750)
T ss_pred HhcccCccccccccCCcCCchhhhhhhHHHHHHHhhhhhh-hhhhhhhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997 999999999999999999999999999999999999999
Q ss_pred HHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHH
Q 003072 561 IKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFIT 640 (850)
Q Consensus 561 i~~~~g~~ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~ 640 (850)
+++++|+.+||++|||+|||||||||||+||+++++++|+.|++ +. ..|+|+||||||||+|+.||+|||+|+
T Consensus 475 i~~~~gi~~~p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~--d~-----~prv~~iFaGKAhP~y~~aK~iIk~I~ 547 (750)
T COG0058 475 IADRTGIEVDPNALFDGQARRIHEYKRQLLNLLDIERLYRILKE--DW-----VPRVQIIFAGKAHPADYAAKEIIKLIN 547 (750)
T ss_pred hhhhcCCccCCCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhc--CC-----CCceEEEEeccCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999984 11 225556999999999999999999999
Q ss_pred HHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccccccccccccc
Q 003072 641 DVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVG 720 (850)
Q Consensus 641 ~va~~vn~Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g 720 (850)
++|+++|+ ++|||||||||||+|++||||||||+||||||+||||||||||||||+|||||||||||||++++|
T Consensus 548 ~~a~~in~------~lkVvFl~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~e~vg 621 (750)
T COG0058 548 DVADVINN------KLKVVFLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIYEHVG 621 (750)
T ss_pred HHHHhhcc------cceEEEeCCCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHHHhcC
Confidence 99999987 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeccchhhhhhhhhhcCCC--C-CCCChhHHHHHHHHhcCCCCccc---HHHHHHHhcc-CCCCCCC-ccccccc
Q 003072 721 EENFFLFGARAHEIAGLRKERSEG--K-FVPDARFEEVKKFVKSGVFGSYN---YDELMGSLEG-NEGFGQA-DYFLVGK 792 (850)
Q Consensus 721 ~eN~f~fG~~~~EV~~l~~~~~~~--~-~~~~~~l~~v~~~i~~g~f~~~~---~~~l~~~L~~-~~~~~~~-D~y~vl~ 792 (850)
++|+|+||.+++++..++.++.+. . +..++.++.+++.+.+|.|++.+ |+++|++|.. . + |+||+++
T Consensus 622 ~~N~~~fG~~~~~v~~~~~~~~~~~~~y~~~~~~v~~~~~~~~~~~~~p~~~~~~~~~~~sl~~~~-----~~dr~~~~y 696 (750)
T COG0058 622 GENGWIFGETVEEVDALRADGYDPNALYYELENEVKPVLDEIIDGRFSPGWKSRFKNLIDSLLPKF-----GTDRMMVLY 696 (750)
T ss_pred CCceEEeCCchhhHHHHHhcccccHHHHHHHhHHHHHHHHHHhcccCCcccHHHHHHHHHHhhhcc-----CccHHHHHH
Confidence 999999999999999998876332 2 45688999999999999998754 8999999984 3 5 9999999
Q ss_pred chhhHHHHHHHHHHHhcCHhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcccc
Q 003072 793 DFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNIIP 846 (850)
Q Consensus 793 DF~sY~~aq~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~~iw~i~p 846 (850)
||.+|++||++++..|.+++.|++++|.|||++|+|||||||++||.+||+++|
T Consensus 697 d~~~Y~~aq~~~~~~~~~~~~W~~~~i~nia~~g~fssDrtI~~Y~~~Iw~~~~ 750 (750)
T COG0058 697 DFKAYVPAQEEVDALYRDQEAWTKKAILNIANSGLFSSDRTIREYAGEIWHIGP 750 (750)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHcCCCCchhHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999999999999999999976
No 8
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=100.00 E-value=1.3e-138 Score=1211.66 Aligned_cols=569 Identities=25% Similarity=0.404 Sum_probs=498.0
Q ss_pred CCHHHHHccCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcceeEEec-CCceeeecccccccCCCcccccCC
Q 003072 31 QSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRIT-KDGQEEVAEDWLELGNPWEIERND 109 (850)
Q Consensus 31 ~~le~~~~~E~da~LgnGGLGrLAgc~ldS~a~L~~P~~G~GlrY~yG~F~Q~I~-dG~Q~E~pd~Wl~~gnpwei~r~~ 109 (850)
||||..+++ .+++||||||||||||||||||||+|++||||+|+||||+|+|+ +|||+|.++.|...+.||+..
T Consensus 91 Fs~E~gl~~--~lpiYsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~--- 165 (778)
T cd04299 91 FSMEFGLHE--SLPIYSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPV--- 165 (778)
T ss_pred eccccccCC--CCCccCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEE---
Confidence 788888887 46799999999999999999999999999999999999999999 899999999999999999752
Q ss_pred ceeeeecCCeeeeCCCCCeeeeCCeeEEEEEEeecCCCCCCCCeEEEEEEEecCCCCcccccccCCCchhHHHHHhhhcc
Q 003072 110 VSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKAAEALTNAE 189 (850)
Q Consensus 110 ~~~~V~f~G~~~~~~~G~~~w~~~~~v~A~~yd~pi~Gy~~~~~~~LRLW~a~v~~~~fdl~~fn~g~~~~a~~~~~~~~ 189 (850)
.+.+|+. +...+|+||+ ++++|+|.++++ .+++++||++.+.|. ..+|
T Consensus 166 ------------~~~~G~~----------~~v~v~l~g~----~v~~rvw~~~vg--~v~lylLDtd~~~n~----~~~R 213 (778)
T cd04299 166 ------------RDADGEP----------VRVSVELPGR----TVYARVWKAQVG--RVPLYLLDTDIPENS----PDDR 213 (778)
T ss_pred ------------ecCCCCe----------EEEEEeeCCC----ceEEEEEEEEcC--CCCEEEecCCccccc----hhhc
Confidence 2445652 2345889997 679999999986 589999999999764 6789
Q ss_pred cccceeccCCCccccchhhhhhhhhhhhchHHHHHHHHHHhcCcccccccCCCCceEEeCCCChhhhHHHHHHHHHHhcC
Q 003072 190 KICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFPEKVAVQMNDTHPTLCIPELIRILIDLKG 269 (850)
Q Consensus 190 ~IT~~LYp~D~~~~GkelRLkQEyflg~aslqdiirr~~~~~gG~~~l~~l~~~~~ihlNDtHpalai~ElmR~Lid~~g 269 (850)
.||++|||+| +++|||||||||+||+|.+ +++ | + ++.+|||||+||||+++||||+||+++|
T Consensus 214 ~iT~~LYg~D-----~~~Rl~Qe~~Lg~agl~~L-r~l----g----~----~pdViH~ND~Haal~~lE~~R~ll~~~g 275 (778)
T cd04299 214 GITDRLYGGD-----QETRIQQEILLGIGGVRAL-RAL----G----I----KPTVYHMNEGHAAFLGLERIRELMAEGG 275 (778)
T ss_pred ccccCCCCCc-----HHHHHHHHHHHHHHHHHHH-HHh----C----C----CCeEEEeCCCcHHHHHHHHHHHHHHHcC
Confidence 9999999998 5889999999999998865 332 1 1 4789999999999999999999999989
Q ss_pred CCHHHHHHHHccceeecccCCCCcccccCCHHHHHHhchhHHHHHHHHhHHHHHHHHHhhCCCCchhhHHHHhhhccccc
Q 003072 270 LSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLKETRILEN 349 (850)
Q Consensus 270 l~~~eAw~i~~~~~~fTnHT~vpealEkw~~~l~~~lLpr~~~II~~in~~f~~~~~~~~~~~~~~~~~~~~~~l~ii~~ 349 (850)
++|++||++|+++++||||||+|+|||+||.++|+++||+|++ .++++.+.+..+++..
T Consensus 276 ~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~l~~~~~~~~~~--------------------~lgl~~~~~~~lg~e~- 334 (778)
T cd04299 276 LSFDEALEAVRASTVFTTHTPVPAGHDRFPPDLVERYFGPYAR--------------------ELGLSRDRFLALGREN- 334 (778)
T ss_pred CCHHHHHHhhCCeEEEecCCchHHHhhhCCHHHHHHHhhHHHH--------------------HcCCCHHHHhhhcccc-
Confidence 9999999999999999999999999999999999999998874 1235777777777632
Q ss_pred cCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhcccccccccCCCCCCcccccccCCCCCCccchhhhh
Q 003072 350 VDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESEQ 429 (850)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (850)
T Consensus 335 -------------------------------------------------------------------------------- 334 (778)
T cd04299 335 -------------------------------------------------------------------------------- 334 (778)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHHHHhhhhcCCCCCeeeeeeeeeccCcchhHHHHHHHHHHhHhhhhhhhhhcCCC---ccccccccccccccccc
Q 003072 430 EDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEK---FQNKTNGVTPRRWIRFC 506 (850)
Q Consensus 430 ~~~~~~~~~~~e~~~~~~~~~~Ma~LAl~~S~~vNGVS~lH~ei~k~~~f~~f~~l~P~k---f~niTNGV~~rrWl~~~ 506 (850)
. .++.+.|||++|||++|++|||||+||++|+|+ ||++|+..||.+ |.+||||||+|||+
T Consensus 335 -----------~--~~~~~~~nM~~laL~~S~~vNgVS~lHg~vsr~-mf~~~~~g~p~~~~~i~~ITNGVh~~~W~--- 397 (778)
T cd04299 335 -----------P--GDDPEPFNMAVLALRLAQRANGVSRLHGEVSRE-MFAGLWPGFPVEEVPIGHVTNGVHVPTWV--- 397 (778)
T ss_pred -----------c--cCccCceeHHHHHHHhcCeeeeecHHHHHHHHH-HhhhhhccCCcccCceeceeCCcchhhhc---
Confidence 0 012357999999999999999999999999997 799999988875 99999999999998
Q ss_pred ChhHHHHHHhhcCCCccccCcchHHHhhh--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHc-----------------CC
Q 003072 507 NPDLSSILTSWLGTEDWVTNTGKLAELRK--FADNEDLQSQFRAAKRNNKMKVVSFIKEKT-----------------GY 567 (850)
Q Consensus 507 Np~L~~Li~~~iG~~~W~~~~~~l~~l~~--~~~D~~f~~~w~~vK~~~K~~L~~~i~~~~-----------------g~ 567 (850)
||++.+||++++|+ +|.++++....|.. .++|+++ | ++|+++|.+|+++|++++ +.
T Consensus 398 ~P~~~~l~~~~~g~-~w~~~~~~~~~~~~~~~i~d~~l---w-~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~~~ 472 (778)
T cd04299 398 APEMRELYDRYLGG-DWRERPTDPELWEAVDDIPDEEL---W-EVRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEADD 472 (778)
T ss_pred CHHHHHHHHHhcCc-chhhccchHHHHhhhcCCCcHHH---H-HHHHHHHHHHHHHHHHHHHhhhhhcCCchhhhhhcCC
Confidence 79999999999997 89999875554444 4678777 7 699999999999999887 45
Q ss_pred cCCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhc
Q 003072 568 SVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVN 647 (850)
Q Consensus 568 ~ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn 647 (850)
.+||++|||+||||||+|||++| ||++++||.+|+. + +++ |+||||||||||+|.+||+|||+|+++++
T Consensus 473 ~ldpd~ltigfarRfa~YKR~~L-il~dl~rl~~il~-~-~~~-----pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~--- 541 (778)
T cd04299 473 VLDPNVLTIGFARRFATYKRATL-LLRDPERLKRLLN-D-PER-----PVQFIFAGKAHPADEPGKELIQEIVEFSR--- 541 (778)
T ss_pred ccCCCccEEeeeecchhhhhHHH-HHHHHHHHHHHhh-C-CCC-----CeEEEEEEecCccchHHHHHHHHHHHHHh---
Confidence 69999999999999999999999 9999999999984 3 334 99999999999999999999999999996
Q ss_pred CCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeee
Q 003072 648 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 727 (850)
Q Consensus 648 ~Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~f 727 (850)
||++.+ ||||+|||||++|++|+||||||+|+|+||+||||||||||||||+||+||+||||.|.. .+.|+|.|
T Consensus 542 -~p~~~~--kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~---~g~nGwai 615 (778)
T cd04299 542 -RPEFRG--RIVFLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY---DGENGWAI 615 (778)
T ss_pred -CcCCCC--cEEEEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc---CCCCceEe
Confidence 999999 999999999999999999999999999999999999999999999999999999999976 45999999
Q ss_pred ccchhhhhhhhhhcCCCCCCCChhHHHHHHHHhcCCCCcccHHHHHHHhccCCCCCCCcccccccchhhHHHHHHHHHHH
Q 003072 728 GARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEA 807 (850)
Q Consensus 728 G~~~~EV~~l~~~~~~~~~~~~~~l~~v~~~i~~g~f~~~~~~~l~~~L~~~~~~~~~D~y~vl~DF~sY~~aq~~v~~~ 807 (850)
|.....- ++. .++ ..|...||+.|+. +.++.+
T Consensus 616 g~~~~~~--------------~~~--------~~d---~~da~~Ly~~Le~-----------------------~i~p~y 647 (778)
T cd04299 616 GDGDEYE--------------DDE--------YQD---AEEAEALYDLLEN-----------------------EVIPLF 647 (778)
T ss_pred CCCcccc--------------Chh--------hcc---hhhHHHHHHHHHH-----------------------HHHHHH
Confidence 9853210 111 111 2369999999985 355577
Q ss_pred hcC-----HhHHHHHHHHHhhc-CCCCChhHHHHHHHHHHh
Q 003072 808 YCD-----QKRWTRMSIMNTAG-SSKFSSDRTIQEYARDIW 842 (850)
Q Consensus 808 Y~d-----~~~W~~~~i~niA~-sg~FSSDRtI~eYa~~iw 842 (850)
|.. +.+|.+||..+|+. ...||++||++||+++.|
T Consensus 648 y~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y 688 (778)
T cd04299 648 YDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFY 688 (778)
T ss_pred hcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhH
Confidence 764 88999999999996 699999999999999999
No 9
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=100.00 E-value=5.5e-133 Score=1142.72 Aligned_cols=568 Identities=25% Similarity=0.393 Sum_probs=495.0
Q ss_pred CCHHHHHccCCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecCCCcceeEEec-CCceeeecccccccCCCcccccCC
Q 003072 31 QSLENVVSQEPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRYKYGLFKQRIT-KDGQEEVAEDWLELGNPWEIERND 109 (850)
Q Consensus 31 ~~le~~~~~E~da~LgnGGLGrLAgc~ldS~a~L~~P~~G~GlrY~yG~F~Q~I~-dG~Q~E~pd~Wl~~gnpwei~r~~ 109 (850)
||||..+++ .+++||||||||||||||||||||+|++||||+|+||||+|+|+ +|||+|.|++|+..+.||+..
T Consensus 4 f~~E~g~~~--~~p~ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~--- 78 (601)
T TIGR02094 4 FSMEYGLHE--SLPIYSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKV--- 78 (601)
T ss_pred EeeccccCC--CCCccCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEE---
Confidence 788988887 57799999999999999999999999999999999999999998 999999999999999999751
Q ss_pred ceeeeecCCeeeeCCCCCeeeeCCeeEEEEEEeecCCCCCCCCeEEEEEEEecCCCCcccccccCCCchhHHHHHhhhcc
Q 003072 110 VSYPVKFYGKIVPGSDGKSHWIGGEDIKAVAYDIPIPGYKTKTTINLRLWSTMVPSEDFDLSAFNAGDHTKAAEALTNAE 189 (850)
Q Consensus 110 ~~~~V~f~G~~~~~~~G~~~w~~~~~v~A~~yd~pi~Gy~~~~~~~LRLW~a~v~~~~fdl~~fn~g~~~~a~~~~~~~~ 189 (850)
.+.+|+ | ++|++|+|| +++++|||+++++ .+++++||+++..| ...+|
T Consensus 79 ------------~~~~g~--~--------~~~~v~i~g----~~~~~rlw~~~~~--~v~lylld~~~~~n----~~~~R 126 (601)
T TIGR02094 79 ------------LDTDGK--W--------LKISVRIRG----RDVYAKVWRVQVG--RVPLYLLDTNIPEN----SEDDR 126 (601)
T ss_pred ------------ecCCCC--e--------EEEEEecCC----cEEEEEEEEEEeC--CCCEEEecCCCccc----chhhc
Confidence 244565 2 479999999 4899999999975 58999999998555 46789
Q ss_pred cccceeccCCCccccchhhhhhhhhhhhchHHHHHHHHHHhcCcccccccCC-CCceEEeCCCChhhhHHHHHHHHHHhc
Q 003072 190 KICYILYPGDESVEGKVLRLKQQYTLCSASLQDIIARFEKRSGANVNWEEFP-EKVAVQMNDTHPTLCIPELIRILIDLK 268 (850)
Q Consensus 190 ~IT~~LYp~D~~~~GkelRLkQEyflg~aslqdiirr~~~~~gG~~~l~~l~-~~~~ihlNDtHpalai~ElmR~Lid~~ 268 (850)
.||++|||+| +++|++||||||+|++|++- .++ ++.+|||||+||||+++||||+|+ ++
T Consensus 127 ~it~~LY~~D-----~~~R~~Qe~fl~~a~l~~l~--------------~l~~~pdviH~ND~Htal~~~el~r~l~-~~ 186 (601)
T TIGR02094 127 WITGRLYGGD-----KEMRIAQEIVLGIGGVRALR--------------ALGIDPDVYHLNEGHAAFVTLERIRELI-AQ 186 (601)
T ss_pred CccCCCCCCC-----HHHHHHHHHHHHHHHHHHHH--------------HcCCCceEEEeCCchHHHHHHHHHHHHH-Hc
Confidence 9999999998 58899999999999998751 222 778999999999999999999999 78
Q ss_pred CCCHHHHHHHHccceeecccCCCCcccccCCHHHHHHhchhHHHHHHHHhHHHHHHHHHhhCCCCchhhHHHHhhhcccc
Q 003072 269 GLSWKEAWNITQRTVAYTNHTVLPEALEKWSFELMQKLLPRHMEIIEMIDEELVHTIVSEYGTADPDLLEKRLKETRILE 348 (850)
Q Consensus 269 gl~~~eAw~i~~~~~~fTnHT~vpealEkw~~~l~~~lLpr~~~II~~in~~f~~~~~~~~~~~~~~~~~~~~~~l~ii~ 348 (850)
|++|++||++|+.+++||||||+|+|+|+||.++|.++|||+ +++..|+.+++. .+++..
T Consensus 187 ~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~~~~~-~~~~gl~~~~~~-------------------~~~~~~ 246 (601)
T TIGR02094 187 GLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKYFGDY-AANLGLPREQLL-------------------ALGREN 246 (601)
T ss_pred CCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHHhhhh-hhHhCCCHHHHH-------------------hhhhhc
Confidence 999999999999999999999999999999999999999984 444455554433 222211
Q ss_pred ccCCchhhhhhhcccccCCCCCCCcccccccCCCCCChhhhhhhhcccccccccCCCCCCcccccccCCCCCCccchhhh
Q 003072 349 NVDLPATFADLFVKTKESTDVVPDDELENCDEEGGPVDEELESAQEDGVLEEESTDVVPDDELENCDEEGGPVDEELESE 428 (850)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (850)
T Consensus 247 -------------------------------------------------------------------------------- 246 (601)
T TIGR02094 247 -------------------------------------------------------------------------------- 246 (601)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhHHHHHhhhhcCCCCCeeeeeeeeeccCcchhHHHHHHHHHHhHhhhhhhhhhcCCC---cccccccccccccccc
Q 003072 429 QEDDVLEEEKEAEAVQEPPQLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEK---FQNKTNGVTPRRWIRF 505 (850)
Q Consensus 429 ~~~~~~~~~~~~e~~~~~~~~~~Ma~LAl~~S~~vNGVS~lH~ei~k~~~f~~f~~l~P~k---f~niTNGV~~rrWl~~ 505 (850)
. +..+.|||+++||++|++|||||++|+++++ .||++|++++|.+ |.+||||||+|+|.
T Consensus 247 ------------~---~~~~~vnm~~lai~~S~~vngVS~lh~~v~~-~l~~~l~~~~~~~~~~i~gItNGId~~~W~-- 308 (601)
T TIGR02094 247 ------------P---DDPEPFNMTVLALRLSRIANGVSKLHGEVSR-KMWQFLYPGYEEEEVPIGYVTNGVHNPTWV-- 308 (601)
T ss_pred ------------c---CccCceeHHHHHHHhCCeeeeecHHHHHHHH-HHHHhhhhhcccccCCccceeCCccccccC--
Confidence 0 0125799999999999999999999999998 5899999999987 99999999999998
Q ss_pred cChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-----------------
Q 003072 506 CNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYS----------------- 568 (850)
Q Consensus 506 ~Np~L~~Li~~~iG~~~W~~~~~~l~~l~~~~~D~~f~~~w~~vK~~~K~~L~~~i~~~~g~~----------------- 568 (850)
||.++.|+++++|+ +|.+++++++.|.++ |....++++++|++||.+|+++|++++|+.
T Consensus 309 -~~~~~~l~~~y~~~-~w~~~~~~~~~~~~~--~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl~ 384 (601)
T TIGR02094 309 -APELRDLYERYLGE-NWRELLADEELWEAI--DDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDRF 384 (601)
T ss_pred -CHHHHHHHHHhCCc-chhccchhhhhhhhc--ccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhccc
Confidence 79999999999997 799999999999886 223334454799999999999999998877
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003072 569 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 648 (850)
Q Consensus 569 ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 648 (850)
+||+++||+||||||+||||+| ||++++||.+|++ ++ + .|+||||+|||||+|.+||++|++|+++++
T Consensus 385 ~dpd~~~ig~v~Rl~~yKr~dL-il~~i~~l~~i~~-~~-~-----~pvq~V~~Gka~p~d~~gk~~i~~i~~la~---- 452 (601)
T TIGR02094 385 LDPDVLTIGFARRFATYKRADL-IFRDLERLARILN-NP-E-----RPVQIVFAGKAHPADGEGKEIIQRIVEFSK---- 452 (601)
T ss_pred cCCCCcEEEEEEcchhhhhHHH-HHHHHHHHHHHhh-CC-C-----CCeEEEEEEecCcccchHHHHHHHHHHHHh----
Confidence 9999999999999999999999 9999999999985 32 2 399999999999999999999999999996
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeec
Q 003072 649 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 728 (850)
Q Consensus 649 Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG 728 (850)
+|++.+ ||+|++|||+++|++|++|||||+|||++|+||||||+|||||||+|++||+||||+|.. ++.|+|.||
T Consensus 453 ~~~~~~--kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~---~~~nGf~f~ 527 (601)
T TIGR02094 453 RPEFRG--RIVFLENYDINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGY---DGDNGWAIG 527 (601)
T ss_pred cccCCC--CEEEEcCCCHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccC---CCCcEEEEC
Confidence 899999 999999999999999999999999999999999999999999999999999999999977 347999999
Q ss_pred cchhhhhhhhhhcCCCCCCCChhHHHHHHHHhcCCCCcccHHHHHHHhccCCCCCCCcccccccchhhHHHHHHHH-HHH
Q 003072 729 ARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKV-DEA 807 (850)
Q Consensus 729 ~~~~EV~~l~~~~~~~~~~~~~~l~~v~~~i~~g~f~~~~~~~l~~~L~~~~~~~~~D~y~vl~DF~sY~~aq~~v-~~~ 807 (850)
...... +. ...+..+..+||+.|+. .| +.+
T Consensus 528 ~~~~~~--------------~~-----------~~~d~~da~~l~~~L~~------------------------ai~~~y 558 (601)
T TIGR02094 528 DGEEYD--------------DE-----------EEQDRLDAEALYDLLEN------------------------EVIPLY 558 (601)
T ss_pred CCcccc--------------cc-----------ccccCCCHHHHHHHHHH------------------------HHHHHH
Confidence 753211 00 11123478999999984 55 566
Q ss_pred hcC-----HhHHHHHHHHHhhc-CCCCChhHHHHHHHHHHhc
Q 003072 808 YCD-----QKRWTRMSIMNTAG-SSKFSSDRTIQEYARDIWN 843 (850)
Q Consensus 808 Y~d-----~~~W~~~~i~niA~-sg~FSSDRtI~eYa~~iw~ 843 (850)
|.+ +.+|.+||..+|+. ...||++||+++|++..|.
T Consensus 559 y~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~yy~ 600 (601)
T TIGR02094 559 YDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKFYL 600 (601)
T ss_pred hcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhCC
Confidence 665 56799999999996 4799999999999998763
No 10
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.84 E-value=2.3e-19 Score=197.42 Aligned_cols=267 Identities=21% Similarity=0.282 Sum_probs=189.2
Q ss_pred CeeeeeeeeeccCcchhHHHHHHHHHHhHhh----hhhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCcc
Q 003072 448 QLVRMANLCVVGSHAVNGVAEIHSEIVTNEV----FNEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDW 523 (850)
Q Consensus 448 ~~~~Ma~LAl~~S~~vNGVS~lH~ei~k~~~----f~~f~~l~P~kf~niTNGV~~rrWl~~~Np~L~~Li~~~iG~~~W 523 (850)
..++|...++..|..++.||.-+.+.+++.. +..+....+.++..|+|||+...|-....+.+...+ .
T Consensus 199 ~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~----~---- 270 (476)
T cd03791 199 GQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANY----S---- 270 (476)
T ss_pred CcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcC----C----
Confidence 5688999999999999999999888665321 011122235789999999999999532222221111 0
Q ss_pred ccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHH
Q 003072 524 VTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMK 603 (850)
Q Consensus 524 ~~~~~~l~~l~~~~~D~~f~~~w~~vK~~~K~~L~~~i~~~~g~~ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik 603 (850)
. . .| ..|..+|..| +++.|...+++..+.+++-|+.++|+..+ ++..+.++ +
T Consensus 271 ---------------~-~---~~-~~~~~~k~~l----~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~-li~a~~~l---~ 322 (476)
T cd03791 271 ---------------A-D---DL-EGKAENKAAL----QEELGLPVDPDAPLFGFVGRLTEQKGIDL-LLEALPEL---L 322 (476)
T ss_pred ---------------c-c---cc-ccHHHHHHHH----HHHcCCCcCCCCCEEEEEeeccccccHHH-HHHHHHHH---H
Confidence 0 1 13 3566666654 46778878899999999999999999988 77766543 2
Q ss_pred hcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccC
Q 003072 604 EMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHIS 683 (850)
Q Consensus 604 ~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip 683 (850)
+ .+.++++.|+..+. +.+.+.++++.. .+ +|+|+..|+-.++..+..+||++...|
T Consensus 323 ~----------~~~~lvi~G~g~~~------~~~~~~~~~~~~------~~--~v~~~~~~~~~~~~~~~~~aDv~l~pS 378 (476)
T cd03791 323 E----------LGGQLVILGSGDPE------YEEALRELAARY------PG--RVAVLIGYDEALAHLIYAGADFFLMPS 378 (476)
T ss_pred H----------cCcEEEEEecCCHH------HHHHHHHHHHhC------CC--cEEEEEeCCHHHHHHHHHhCCEEECCC
Confidence 2 14689999988542 223333333311 12 799999999999999999999999977
Q ss_pred CCccccCCCccchhhcccceEeeecccccccccccccc----cceeeeccchhhhhhhhhhcCCCCCCCChhHHHHHHHH
Q 003072 684 TAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGE----ENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFV 759 (850)
Q Consensus 684 ~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~----eN~f~fG~~~~EV~~l~~~~~~~~~~~~~~l~~v~~~i 759 (850)
+ .|++|.+.|.||++|++.|+|--|...|+.....+ .|+|+|...
T Consensus 379 ~--~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~----------------------------- 427 (476)
T cd03791 379 R--FEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGY----------------------------- 427 (476)
T ss_pred C--CCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCC-----------------------------
Confidence 6 69999999999999999999998988887654421 167776532
Q ss_pred hcCCCCcccHHHHHHHhccCCCCCCCcccccccchhhHHHHHHHHHHHhcCHhHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 003072 760 KSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYAR 839 (850)
Q Consensus 760 ~~g~f~~~~~~~l~~~L~~~~~~~~~D~y~vl~DF~sY~~aq~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~ 839 (850)
+.++|.+.|. ++...|.+++.|.+|+...++. .||-++++++|.+
T Consensus 428 --------~~~~l~~~i~-------------------------~~l~~~~~~~~~~~~~~~~~~~--~fsw~~~a~~~~~ 472 (476)
T cd03791 428 --------NADALLAALR-------------------------RALALYRDPEAWRKLQRNAMAQ--DFSWDRSAKEYLE 472 (476)
T ss_pred --------CHHHHHHHHH-------------------------HHHHHHcCHHHHHHHHHHHhcc--CCChHHHHHHHHH
Confidence 2333443333 4455677899999998877664 6999999999976
Q ss_pred H
Q 003072 840 D 840 (850)
Q Consensus 840 ~ 840 (850)
-
T Consensus 473 ~ 473 (476)
T cd03791 473 L 473 (476)
T ss_pred H
Confidence 4
No 11
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.80 E-value=4.7e-18 Score=188.64 Aligned_cols=266 Identities=18% Similarity=0.271 Sum_probs=183.3
Q ss_pred CeeeeeeeeeccCcchhHHHHHHHHHHhHhhhh----hhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCcc
Q 003072 448 QLVRMANLCVVGSHAVNGVAEIHSEIVTNEVFN----EFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDW 523 (850)
Q Consensus 448 ~~~~Ma~LAl~~S~~vNGVS~lH~ei~k~~~f~----~f~~l~P~kf~niTNGV~~rrWl~~~Np~L~~Li~~~iG~~~W 523 (850)
+.++|...++..|..++.||.-+.+-+.+..+. .+....+.++.-|.|||...+| ||.-... +.. .
T Consensus 194 ~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~~----~p~~~~~----~~~-~- 263 (473)
T TIGR02095 194 GRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEVW----NPATDPY----LKA-N- 263 (473)
T ss_pred CchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCcccc----CCCCCcc----ccc-C-
Confidence 357888888999999999999887755432111 1112246789999999999999 4542111 111 0
Q ss_pred ccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHH
Q 003072 524 VTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMK 603 (850)
Q Consensus 524 ~~~~~~l~~l~~~~~D~~f~~~w~~vK~~~K~~L~~~i~~~~g~~ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik 603 (850)
+.. +.| +-|..+|.. ++++.|...+++..+.+++-|+.++|...+ ++..+.++ +
T Consensus 264 ------------~~~-----~~~-~~k~~~k~~----l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~-li~a~~~l---~ 317 (473)
T TIGR02095 264 ------------YSA-----DDL-AGKAENKEA----LQEELGLPVDDDVPLFGVISRLTQQKGVDL-LLAALPEL---L 317 (473)
T ss_pred ------------cCc-----cch-hhhhhhHHH----HHHHcCCCccCCCCEEEEEecCccccChHH-HHHHHHHH---H
Confidence 000 113 244555554 466788877789999999999999999988 77666553 2
Q ss_pred hcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccC
Q 003072 604 EMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHIS 683 (850)
Q Consensus 604 ~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip 683 (850)
+ . +.++++.|+..|.+ .+. +.++++ +.+ + +|+|+..|+.+.+..++.+||+....|
T Consensus 318 ~-----~-----~~~lvi~G~g~~~~--~~~----l~~~~~---~~~---~--~v~~~~~~~~~~~~~~~~~aDv~l~pS 373 (473)
T TIGR02095 318 E-----L-----GGQLVVLGTGDPEL--EEA----LRELAE---RYP---G--NVRVIIGYDEALAHLIYAGADFILMPS 373 (473)
T ss_pred H-----c-----CcEEEEECCCCHHH--HHH----HHHHHH---HCC---C--cEEEEEcCCHHHHHHHHHhCCEEEeCC
Confidence 2 1 36899999876532 222 233332 122 2 699999999999999999999999987
Q ss_pred CCccccCCCccchhhcccceEeeecccccccccccc----cccceeeeccchhhhhhhhhhcCCCCCCCChhHHHHHHHH
Q 003072 684 TAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEV----GEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFV 759 (850)
Q Consensus 684 ~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~----g~eN~f~fG~~~~EV~~l~~~~~~~~~~~~~~l~~v~~~i 759 (850)
+ .|.+|.+-|.||..|++-|.|--|...|+.... ...|+|+|...
T Consensus 374 ~--~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~----------------------------- 422 (473)
T TIGR02095 374 R--FEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEY----------------------------- 422 (473)
T ss_pred C--cCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCC-----------------------------
Confidence 7 699999999999999999999888888766543 12567776431
Q ss_pred hcCCCCcccHHHHHHHhccCCCCCCCcccccccchhhHHHHHHHHHHHh-cCHhHHHHHHHHHhhcCCCCChhHHHHHHH
Q 003072 760 KSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAY-CDQKRWTRMSIMNTAGSSKFSSDRTIQEYA 838 (850)
Q Consensus 760 ~~g~f~~~~~~~l~~~L~~~~~~~~~D~y~vl~DF~sY~~aq~~v~~~Y-~d~~~W~~~~i~niA~sg~FSSDRtI~eYa 838 (850)
+.+.|.+.|. ++...| .|++.|.+|....+. -.||-+++.++|.
T Consensus 423 --------d~~~la~~i~-------------------------~~l~~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~ 467 (473)
T TIGR02095 423 --------DPGALLAALS-------------------------RALRLYRQDPSLWEALQKNAMS--QDFSWDKSAKQYV 467 (473)
T ss_pred --------CHHHHHHHHH-------------------------HHHHHHhcCHHHHHHHHHHHhc--cCCCcHHHHHHHH
Confidence 2233333333 333334 488899988877653 5899999999996
Q ss_pred H
Q 003072 839 R 839 (850)
Q Consensus 839 ~ 839 (850)
+
T Consensus 468 ~ 468 (473)
T TIGR02095 468 E 468 (473)
T ss_pred H
Confidence 5
No 12
>PRK14098 glycogen synthase; Provisional
Probab=99.67 E-value=8.7e-15 Score=165.55 Aligned_cols=268 Identities=17% Similarity=0.261 Sum_probs=183.9
Q ss_pred CeeeeeeeeeccCcchhHHHHHHHHHHhHh-hh----hhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCc
Q 003072 448 QLVRMANLCVVGSHAVNGVAEIHSEIVTNE-VF----NEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTED 522 (850)
Q Consensus 448 ~~~~Ma~LAl~~S~~vNGVS~lH~ei~k~~-~f----~~f~~l~P~kf~niTNGV~~rrWl~~~Np~L~~Li~~~iG~~~ 522 (850)
+.+|+...+++.|..|+.||.-..+-+++. .+ +..-...+.++.-|.|||....|- |.-...+.+..+
T Consensus 209 ~~~n~lk~~i~~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~----p~~d~~~~~~~~--- 281 (489)
T PRK14098 209 DEVNMLYTGVEHADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWN----PSTDKLIKKRYS--- 281 (489)
T ss_pred CcccHHHHHHHhcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccC----CcccccccccCC---
Confidence 357888889999999999998777655431 00 111112367899999999999994 532111111111
Q ss_pred cccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHH
Q 003072 523 WVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKM 602 (850)
Q Consensus 523 W~~~~~~l~~l~~~~~D~~f~~~w~~vK~~~K~~L~~~i~~~~g~~ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~i 602 (850)
.+ . + +-|..+|..| ++.+|...+++....+++-|+..+|...+ ++..+.++
T Consensus 282 ---------------~~-~----~-~~k~~~k~~l----~~~lgl~~~~~~~~i~~vgRl~~~KG~d~-li~a~~~l--- 332 (489)
T PRK14098 282 ---------------IE-R----L-DGKLENKKAL----LEEVGLPFDEETPLVGVIINFDDFQGAEL-LAESLEKL--- 332 (489)
T ss_pred ---------------cc-h----h-hhHHHHHHHH----HHHhCCCCccCCCEEEEeccccccCcHHH-HHHHHHHH---
Confidence 11 1 3 3566677554 55789888999999999999999999988 77766553
Q ss_pred HhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhcccccccccc
Q 003072 603 KEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHI 682 (850)
Q Consensus 603 k~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~ni 682 (850)
++ .+.++|+.|...+. .-+.+.++++. .| + +|.|+..|+-+.+..++.+||+...-
T Consensus 333 ~~----------~~~~lvivG~G~~~------~~~~l~~l~~~---~~---~--~V~~~g~~~~~~~~~~~a~aDi~l~P 388 (489)
T PRK14098 333 VE----------LDIQLVICGSGDKE------YEKRFQDFAEE---HP---E--QVSVQTEFTDAFFHLAIAGLDMLLMP 388 (489)
T ss_pred Hh----------cCcEEEEEeCCCHH------HHHHHHHHHHH---CC---C--CEEEEEecCHHHHHHHHHhCCEEEeC
Confidence 22 14689898864221 22233333331 12 2 79999999999999999999999987
Q ss_pred CCCccccCCCccchhhcccceEeeeccccccccccccc--ccceeeeccchhhhhhhhhhcCCCCCCCChhHHHHHHHHh
Q 003072 683 STAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVG--EENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVK 760 (850)
Q Consensus 683 p~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g--~eN~f~fG~~~~EV~~l~~~~~~~~~~~~~~l~~v~~~i~ 760 (850)
|+ .|++|.+-|-+|..|++-|++--|...|+..++. ..|+|+|...
T Consensus 389 S~--~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~------------------------------ 436 (489)
T PRK14098 389 GK--IESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDY------------------------------ 436 (489)
T ss_pred CC--CCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCC------------------------------
Confidence 76 7999999999999999999998888877665432 2466766321
Q ss_pred cCCCCcccHHHHHHHhccCCCCCCCcccccccchhhHHHHHHHHHHHhcCHhHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 003072 761 SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARD 840 (850)
Q Consensus 761 ~g~f~~~~~~~l~~~L~~~~~~~~~D~y~vl~DF~sY~~aq~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~~ 840 (850)
|-+.|.+.|. ++...|.|++.|.++....++ -.||-++++++|. +
T Consensus 437 -------d~~~la~ai~-------------------------~~l~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~y~-~ 481 (489)
T PRK14098 437 -------TPEALVAKLG-------------------------EALALYHDEERWEELVLEAME--RDFSWKNSAEEYA-Q 481 (489)
T ss_pred -------CHHHHHHHHH-------------------------HHHHHHcCHHHHHHHHHHHhc--CCCChHHHHHHHH-H
Confidence 2233333332 444567888999888776543 5899999999995 4
Q ss_pred Hh
Q 003072 841 IW 842 (850)
Q Consensus 841 iw 842 (850)
+|
T Consensus 482 lY 483 (489)
T PRK14098 482 LY 483 (489)
T ss_pred HH
Confidence 44
No 13
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.66 E-value=2.6e-15 Score=167.41 Aligned_cols=264 Identities=19% Similarity=0.268 Sum_probs=176.6
Q ss_pred eeeeeeeeeccCcchhHHHHHHHHHHhHhhhh----hhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccc
Q 003072 449 LVRMANLCVVGSHAVNGVAEIHSEIVTNEVFN----EFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWV 524 (850)
Q Consensus 449 ~~~Ma~LAl~~S~~vNGVS~lH~ei~k~~~f~----~f~~l~P~kf~niTNGV~~rrWl~~~Np~L~~Li~~~iG~~~W~ 524 (850)
.+++...+++.|..|+.||.-+.+-+++..|. .+....+.|+.-|.|||....|- |.-...+.....
T Consensus 187 ~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~----p~~~~~~~~~~~----- 257 (466)
T PRK00654 187 QISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYDIWN----PETDPLLAANYS----- 257 (466)
T ss_pred cccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCCccccC----CccCcccccccC-----
Confidence 46777778999999999999887755442221 12233467899999999999994 532111111111
Q ss_pred cCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHHh
Q 003072 525 TNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKE 604 (850)
Q Consensus 525 ~~~~~l~~l~~~~~D~~f~~~w~~vK~~~K~~L~~~i~~~~g~~ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~ 604 (850)
. ..| +-|..+|..| +++.|.. +++..+.+++-|+.++|...+ ++..+.++ ++
T Consensus 258 ---------------~---~~~-~~k~~~k~~l----~~~~gl~-~~~~~~i~~vGRl~~~KG~~~-li~a~~~l---~~ 309 (466)
T PRK00654 258 ---------------A---DDL-EGKAENKRAL----QERFGLP-DDDAPLFAMVSRLTEQKGLDL-VLEALPEL---LE 309 (466)
T ss_pred ---------------h---hhh-hchHHHHHHH----HHHhCCC-CCCCcEEEEeeccccccChHH-HHHHHHHH---Hh
Confidence 0 113 2455555544 4566755 457888999999999999998 77665543 32
Q ss_pred cChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCC
Q 003072 605 MSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHIST 684 (850)
Q Consensus 605 ~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ 684 (850)
.+.++++.|...|.+ -+.+.+ +++.. .+ +|+|+..|+-+++..++.+||+....|+
T Consensus 310 ----------~~~~lvivG~g~~~~--~~~l~~----l~~~~------~~--~v~~~~g~~~~~~~~~~~~aDv~v~PS~ 365 (466)
T PRK00654 310 ----------QGGQLVLLGTGDPEL--EEAFRA----LAARY------PG--KVGVQIGYDEALAHRIYAGADMFLMPSR 365 (466)
T ss_pred ----------cCCEEEEEecCcHHH--HHHHHH----HHHHC------CC--cEEEEEeCCHHHHHHHHhhCCEEEeCCC
Confidence 045788888754422 122333 33211 12 6777888988889999999999999888
Q ss_pred CccccCCCccchhhcccceEeeecccccccccccc----cccceeeeccchhhhhhhhhhcCCCCCCCChhHHHHHHHHh
Q 003072 685 AGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEV----GEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVK 760 (850)
Q Consensus 685 ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~----g~eN~f~fG~~~~EV~~l~~~~~~~~~~~~~~l~~v~~~i~ 760 (850)
.|.+|.+-|.||..|++-|.|--|--.|+.... +..|+|+|..
T Consensus 366 --~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~------------------------------- 412 (466)
T PRK00654 366 --FEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDD------------------------------- 412 (466)
T ss_pred --CCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCC-------------------------------
Confidence 799999999999999999999777766655332 2256666642
Q ss_pred cCCCCcccHHHHHHHhccCCCCCCCcccccccchhhHHHHHHHHHHHhcCHhHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 003072 761 SGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYAR 839 (850)
Q Consensus 761 ~g~f~~~~~~~l~~~L~~~~~~~~~D~y~vl~DF~sY~~aq~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~ 839 (850)
.|.+.|.+.|. ++...|.+++.|.+|+...++ -.||.+++.++|.+
T Consensus 413 ------~d~~~la~~i~-------------------------~~l~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~~ 458 (466)
T PRK00654 413 ------FNAEDLLRALR-------------------------RALELYRQPPLWRALQRQAMA--QDFSWDKSAEEYLE 458 (466)
T ss_pred ------CCHHHHHHHHH-------------------------HHHHHhcCHHHHHHHHHHHhc--cCCChHHHHHHHHH
Confidence 12334444443 344456677888888776654 58999999999965
No 14
>PLN02939 transferase, transferring glycosyl groups
Probab=99.47 E-value=7.3e-12 Score=150.56 Aligned_cols=268 Identities=18% Similarity=0.247 Sum_probs=180.9
Q ss_pred CeeeeeeeeeccCcchhHHHHHHHHHHhHhhh---hhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccc
Q 003072 448 QLVRMANLCVVGSHAVNGVAEIHSEIVTNEVF---NEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWV 524 (850)
Q Consensus 448 ~~~~Ma~LAl~~S~~vNGVS~lH~ei~k~~~f---~~f~~l~P~kf~niTNGV~~rrWl~~~Np~L~~Li~~~iG~~~W~ 524 (850)
+.+|+-..+++.|..|+-||.-+.+-+++.-. .......+.++.-|-|||....| ||.-...|.....
T Consensus 682 ~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~w----nPatD~~L~~~Ys----- 752 (977)
T PLN02939 682 GRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTW----NPSTDRFLKVQYN----- 752 (977)
T ss_pred CchHHHHHHHHhCCeeEeeeHHHHHHHHHHhccchHHHhccccCCceEEecceehhhc----CCccccccccccC-----
Confidence 46888788899999999999888875543211 11233457789999999999999 5653222211111
Q ss_pred cCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCC-CCcccccccccccccccccchhhhHHHHHHHHH
Q 003072 525 TNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVS-PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMK 603 (850)
Q Consensus 525 ~~~~~l~~l~~~~~D~~f~~~w~~vK~~~K~~L~~~i~~~~g~~ld-pd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik 603 (850)
++| | +=|..+|.. +++++|..-+ ++..+.++|-|+++.|...+ ++..+.++ .
T Consensus 753 ------------~~d------l-~GK~~nK~a----LRkelGL~~~d~d~pLIg~VGRL~~QKGiDl-LleA~~~L---l 805 (977)
T PLN02939 753 ------------AND------L-QGKAANKAA----LRKQLGLSSADASQPLVGCITRLVPQKGVHL-IRHAIYKT---A 805 (977)
T ss_pred ------------hhh------h-hhhhhhhHH----HHHHhCCCcccccceEEEEeecCCcccChHH-HHHHHHHH---h
Confidence 112 4 356666655 4567787653 67889999999999999988 77665543 2
Q ss_pred hcChhhhhcccCCeEEEEeccC-CCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhcccccccccc
Q 003072 604 EMSAVERKAKFVPRVCIFGGKA-FATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHI 682 (850)
Q Consensus 604 ~~~~~~r~~~~~P~~~IFaGKA-~P~y~~aK~iIk~I~~va~~vn~Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~ni 682 (850)
+ ...++|++|.. .|. .-.. +..+++... ..+ +|.|+-.|+=.++..++.|||+-..-
T Consensus 806 ~----------~dvqLVIvGdGp~~~--~e~e----L~~La~~l~----l~d--rV~FlG~~de~lah~IYAaADIFLmP 863 (977)
T PLN02939 806 E----------LGGQFVLLGSSPVPH--IQRE----FEGIADQFQ----SNN--NIRLILKYDEALSHSIYAASDMFIIP 863 (977)
T ss_pred h----------cCCEEEEEeCCCcHH--HHHH----HHHHHHHcC----CCC--eEEEEeccCHHHHHHHHHhCCEEEEC
Confidence 1 03578888865 222 1222 233333221 233 79999999988999999999999998
Q ss_pred CCCccccCCCccchhhcccceEeeeccccccccccccc-------ccceeeeccchhhhhhhhhhcCCCCCCCChhHHHH
Q 003072 683 STAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVG-------EENFFLFGARAHEIAGLRKERSEGKFVPDARFEEV 755 (850)
Q Consensus 683 p~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g-------~eN~f~fG~~~~EV~~l~~~~~~~~~~~~~~l~~v 755 (850)
|+ .|.+|-+-|-||.-|++-|.+--|--.|+...++ ..|+|+|...
T Consensus 864 Sr--~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~------------------------- 916 (977)
T PLN02939 864 SM--FEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTP------------------------- 916 (977)
T ss_pred CC--ccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCC-------------------------
Confidence 87 6999999999999999999887777777654432 3577777431
Q ss_pred HHHHhcCCCCcccHHHHHHHhccCCCCCCCcccccccchhhHHHHHHHHHH-HhcCHhHHHHHHHHHhhcCCCCChhHHH
Q 003072 756 KKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDE-AYCDQKRWTRMSIMNTAGSSKFSSDRTI 834 (850)
Q Consensus 756 ~~~i~~g~f~~~~~~~l~~~L~~~~~~~~~D~y~vl~DF~sY~~aq~~v~~-~Y~d~~~W~~~~i~niA~sg~FSSDRtI 834 (850)
+-..|.+.|. ++.. +..|++.|.+|....++ -.||-++++
T Consensus 917 ------------D~eaLa~AL~-------------------------rAL~~~~~dpe~~~~L~~~am~--~dFSWe~~A 957 (977)
T PLN02939 917 ------------DEQGLNSALE-------------------------RAFNYYKRKPEVWKQLVQKDMN--IDFSWDSSA 957 (977)
T ss_pred ------------CHHHHHHHHH-------------------------HHHHHhccCHHHHHHHHHHHHH--hcCCHHHHH
Confidence 2233333332 2222 33578889888765443 579999999
Q ss_pred HHHHH
Q 003072 835 QEYAR 839 (850)
Q Consensus 835 ~eYa~ 839 (850)
++|.+
T Consensus 958 ~qYee 962 (977)
T PLN02939 958 SQYEE 962 (977)
T ss_pred HHHHH
Confidence 99964
No 15
>PRK14099 glycogen synthase; Provisional
Probab=99.41 E-value=7.6e-12 Score=141.71 Aligned_cols=265 Identities=16% Similarity=0.214 Sum_probs=174.7
Q ss_pred eeeeeeeeeccCcchhHHHHHHHHHHhHhhh----hhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccc
Q 003072 449 LVRMANLCVVGSHAVNGVAEIHSEIVTNEVF----NEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWV 524 (850)
Q Consensus 449 ~~~Ma~LAl~~S~~vNGVS~lH~ei~k~~~f----~~f~~l~P~kf~niTNGV~~rrWl~~~Np~L~~Li~~~iG~~~W~ 524 (850)
.++|...+++.|..|+.||.-+.+-+++..+ .......+.++.-|.|||....| ||.-...+....
T Consensus 199 ~~~~~k~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f----~p~~~~~~~~~~------ 268 (485)
T PRK14099 199 GIGYLKAGLQLADRITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAVW----NPATDELIAATY------ 268 (485)
T ss_pred CccHHHHHHHhcCeeeecChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhhc----cccccchhhhcC------
Confidence 4566667888899999999887765543210 11122346789999999999999 454222111111
Q ss_pred cCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHHh
Q 003072 525 TNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKE 604 (850)
Q Consensus 525 ~~~~~l~~l~~~~~D~~f~~~w~~vK~~~K~~L~~~i~~~~g~~ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~ 604 (850)
+.+ .+ +-|..+|..| +++.|...+++.++.+++-|+.++|...+ ++..+.++ .+
T Consensus 269 --------------~~~---~~-~~k~~~k~~l----~~~~gl~~~~~~~li~~VgRL~~~KG~d~-Li~A~~~l---~~ 322 (485)
T PRK14099 269 --------------DVE---TL-AARAANKAAL----QARFGLDPDPDALLLGVISRLSWQKGLDL-LLEALPTL---LG 322 (485)
T ss_pred --------------Chh---HH-HhHHHhHHHH----HHHcCCCcccCCcEEEEEecCCccccHHH-HHHHHHHH---Hh
Confidence 111 13 4566666554 66789888889999999999999999988 77665543 22
Q ss_pred cChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCC
Q 003072 605 MSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHIST 684 (850)
Q Consensus 605 ~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ 684 (850)
. ..++|+.|...+ . +-+.+.++++ ..+ + +|+++-.|+-.+++.+..+||+...-|+
T Consensus 323 -~---------~~~lvivG~G~~---~---~~~~l~~l~~---~~~---~--~v~~~~G~~~~l~~~~~a~aDifv~PS~ 378 (485)
T PRK14099 323 -E---------GAQLALLGSGDA---E---LEARFRAAAQ---AYP---G--QIGVVIGYDEALAHLIQAGADALLVPSR 378 (485)
T ss_pred -c---------CcEEEEEecCCH---H---HHHHHHHHHH---HCC---C--CEEEEeCCCHHHHHHHHhcCCEEEECCc
Confidence 0 346777776422 1 1222233332 122 2 5655567899999999899999999776
Q ss_pred CccccCCCccchhhcccceEeeecccccccccccc-------cccceeeeccchhhhhhhhhhcCCCCCCCChhHHHHHH
Q 003072 685 AGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEV-------GEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKK 757 (850)
Q Consensus 685 ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~-------g~eN~f~fG~~~~EV~~l~~~~~~~~~~~~~~l~~v~~ 757 (850)
.|.+|.+-|-||.-|++-|.|--|.-.|+.... |..|+|+|..
T Consensus 379 --~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~---------------------------- 428 (485)
T PRK14099 379 --FEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSP---------------------------- 428 (485)
T ss_pred --cCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCC----------------------------
Confidence 699999999999999766666566666654332 2256666643
Q ss_pred HHhcCCCCcccHHHHHHHhccCCCCCCCcccccccchhhHHHHHHHHHHHhcCHhHHHHHHHHHhhcCCCCChhHHHHHH
Q 003072 758 FVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEY 837 (850)
Q Consensus 758 ~i~~g~f~~~~~~~l~~~L~~~~~~~~~D~y~vl~DF~sY~~aq~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eY 837 (850)
.|-+.|.+.|. ++...|.|++.|.+|....+ .-.||-+++.++|
T Consensus 429 ---------~d~~~La~ai~-------------------------~a~~l~~d~~~~~~l~~~~~--~~~fSw~~~a~~y 472 (485)
T PRK14099 429 ---------VTADALAAALR-------------------------KTAALFADPVAWRRLQRNGM--TTDVSWRNPAQHY 472 (485)
T ss_pred ---------CCHHHHHHHHH-------------------------HHHHHhcCHHHHHHHHHHhh--hhcCChHHHHHHH
Confidence 12334444443 44456788899988887765 3689999999999
Q ss_pred HH
Q 003072 838 AR 839 (850)
Q Consensus 838 a~ 839 (850)
.+
T Consensus 473 ~~ 474 (485)
T PRK14099 473 AA 474 (485)
T ss_pred HH
Confidence 54
No 16
>PLN02316 synthase/transferase
Probab=98.82 E-value=1.4e-07 Score=115.66 Aligned_cols=176 Identities=18% Similarity=0.281 Sum_probs=120.4
Q ss_pred CCCcccccccccccccccccChhHHHHHHhhcCCCccccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 003072 487 PEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTG 566 (850)
Q Consensus 487 P~kf~niTNGV~~rrWl~~~Np~L~~Li~~~iG~~~W~~~~~~l~~l~~~~~D~~f~~~w~~vK~~~K~~L~~~i~~~~g 566 (850)
+.|+.-|.|||.+.+| ||.-...+ .. .+. ++| +.+-|..+|..| ++++|
T Consensus 786 ~~Kl~vI~NGID~~~w----~P~tD~~l----p~-~y~------------~~~------~~~gK~~~k~~L----r~~lG 834 (1036)
T PLN02316 786 LYKFHGILNGIDPDIW----DPYNDNFI----PV-PYT------------SEN------VVEGKRAAKEAL----QQRLG 834 (1036)
T ss_pred cCCEEEEECCcccccc----CCcccccc----cc-cCC------------chh------hhhhhhhhHHHH----HHHhC
Confidence 4689999999999999 45421111 10 000 011 112344455443 55678
Q ss_pred CcCCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 003072 567 YSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATV 646 (850)
Q Consensus 567 ~~ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~v 646 (850)
.. +++....++|-|+++.|-..+ ++..+.++ .+ + +.++|+.|.. |....-..+.++...++.
T Consensus 835 L~-~~d~plVg~VGRL~~qKGvdl-Li~Al~~l---l~-----~-----~~qlVIvG~G-pd~~~e~~l~~La~~Lg~-- 896 (1036)
T PLN02316 835 LK-QADLPLVGIITRLTHQKGIHL-IKHAIWRT---LE-----R-----NGQVVLLGSA-PDPRIQNDFVNLANQLHS-- 896 (1036)
T ss_pred CC-cccCeEEEEEeccccccCHHH-HHHHHHHH---hh-----c-----CcEEEEEeCC-CCHHHHHHHHHHHHHhCc--
Confidence 65 357888999999999999988 77665554 21 1 4578888854 432233445555544431
Q ss_pred cCCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccc
Q 003072 647 NHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEV 719 (850)
Q Consensus 647 n~Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~ 719 (850)
...+ +|.|.-.|+-.++..++.|||+-.--|+ .|.||-+-|-||--|++-|.+--|-..|+...+
T Consensus 897 ----~~~~--rV~f~g~~de~lah~iyaaADiflmPS~--~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~ 961 (1036)
T PLN02316 897 ----SHHD--RARLCLTYDEPLSHLIYAGADFILVPSI--FEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDV 961 (1036)
T ss_pred ----cCCC--eEEEEecCCHHHHHHHHHhCcEEEeCCc--ccCccHHHHHHHHcCCCeEEEcCCCcHhhcccc
Confidence 1223 7888888999999999999999998876 799999999999999999989888888766554
No 17
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=97.92 E-value=0.00012 Score=84.61 Aligned_cols=271 Identities=18% Similarity=0.226 Sum_probs=179.5
Q ss_pred CeeeeeeeeeccCcchhHHHHHHHHHHhHhhh----hhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCcc
Q 003072 448 QLVRMANLCVVGSHAVNGVAEIHSEIVTNEVF----NEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDW 523 (850)
Q Consensus 448 ~~~~Ma~LAl~~S~~vNGVS~lH~ei~k~~~f----~~f~~l~P~kf~niTNGV~~rrWl~~~Np~L~~Li~~~iG~~~W 523 (850)
+.+++-..++..|.+|+-||.-+.+=+...-| .++-.....+++.|-||+..--| ||+-...+...
T Consensus 197 ~~~~~lK~gi~~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~w----np~~d~~~~~~------ 266 (487)
T COG0297 197 GQISFLKGGLYYADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRSGKLSGILNGIDYDLW----NPETDPYIAAN------ 266 (487)
T ss_pred CcchhhhhhheeccEEEEECHHHHHhhccccccccchhhhhhccccEEEEEeeEEeccc----Ccccccchhcc------
Confidence 45888899999999999999888763321111 12223345678899999999999 56532222111
Q ss_pred ccCcchHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHH
Q 003072 524 VTNTGKLAELRKFADNEDLQSQFRAAKRNNKMKVVSFIKEKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMK 603 (850)
Q Consensus 524 ~~~~~~l~~l~~~~~D~~f~~~w~~vK~~~K~~L~~~i~~~~g~~ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik 603 (850)
+ +. +.|. .|..||..|- ++.|...+.+....+++-|+.++|=-+| ++..+..+.+-
T Consensus 267 ------------y--~~---~~~~-~k~~nk~~L~----~~~gL~~~~~~pl~~~vsRl~~QKG~dl-~~~~i~~~l~~- 322 (487)
T COG0297 267 ------------Y--SA---EVLP-AKAENKVALQ----ERLGLDVDLPGPLFGFVSRLTAQKGLDL-LLEAIDELLEQ- 322 (487)
T ss_pred ------------C--Cc---cchh-hhHHHHHHHH----HHhCCCCCCCCcEEEEeeccccccchhH-HHHHHHHHHHh-
Confidence 1 11 1142 3677777664 4679999999999999999999999998 88777765211
Q ss_pred hcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccC
Q 003072 604 EMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHIS 683 (850)
Q Consensus 604 ~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip 683 (850)
..|+|+=|++-|.+..+ +..+++.+. + ++.+.-.|+..+|++|..|||+|+-=|
T Consensus 323 ------------~~~~vilG~gd~~le~~------~~~la~~~~------~--~~~~~i~~~~~la~~i~agaD~~lmPS 376 (487)
T COG0297 323 ------------GWQLVLLGTGDPELEEA------LRALASRHP------G--RVLVVIGYDEPLAHLIYAGADVILMPS 376 (487)
T ss_pred ------------CceEEEEecCcHHHHHH------HHHHHHhcC------c--eEEEEeeecHHHHHHHHhcCCEEEeCC
Confidence 25899999996665543 344444322 2 799999999999999999999999666
Q ss_pred CCccccCCCccchhhcccceEeeecccccccccccccccceeeeccchhhhhhhhhhcCCCCCCCChhHHHHHHHHhcC-
Q 003072 684 TAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSG- 762 (850)
Q Consensus 684 ~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG~~~~EV~~l~~~~~~~~~~~~~~l~~v~~~i~~g- 762 (850)
+ .|.||-+-|-+|.=|++=|-. ++|+--.-+... +++. ..-...|
T Consensus 377 r--fEPcGL~ql~amryGtvpIv~----------~tGGLadTV~~~-------------------~~~~---~~~~gtGf 422 (487)
T COG0297 377 R--FEPCGLTQLYAMRYGTLPIVR----------ETGGLADTVVDR-------------------NEWL---IQGVGTGF 422 (487)
T ss_pred c--CcCCcHHHHHHHHcCCcceEc----------ccCCccceecCc-------------------cchh---ccCceeEE
Confidence 5 699999999999999954433 332211111111 1110 0001112
Q ss_pred CCCcccHHHHHHHhccCCCCCCCcccccccchhhHHHHHHHHHHHhcCHhH-HHHHHHHHhhcCCCCChhHHHHHHHH
Q 003072 763 VFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYLECQEKVDEAYCDQKR-WTRMSIMNTAGSSKFSSDRTIQEYAR 839 (850)
Q Consensus 763 ~f~~~~~~~l~~~L~~~~~~~~~D~y~vl~DF~sY~~aq~~v~~~Y~d~~~-W~~~~i~niA~sg~FSSDRtI~eYa~ 839 (850)
.|.+.+.+.+-..|. +....|+++.. |..+....+. ..||.|+|..+|.+
T Consensus 423 ~f~~~~~~~l~~al~-------------------------rA~~~y~~~~~~w~~~~~~~m~--~d~sw~~sa~~y~~ 473 (487)
T COG0297 423 LFLQTNPDHLANALR-------------------------RALVLYRAPPLLWRKVQPNAMG--ADFSWDLSAKEYVE 473 (487)
T ss_pred EEecCCHHHHHHHHH-------------------------HHHHHhhCCHHHHHHHHHhhcc--cccCchhHHHHHHH
Confidence 122223444444443 56667888777 9887766555 99999999999976
No 18
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=97.27 E-value=0.0022 Score=65.42 Aligned_cols=132 Identities=14% Similarity=0.109 Sum_probs=92.6
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003072 569 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 648 (850)
Q Consensus 569 ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 648 (850)
..++....+++-|+.+.|+..+ ++..+.++.+- ..+.++++.|+..+.+....+.+ +.+.
T Consensus 199 ~~~~~~~i~~~G~~~~~K~~~~-li~a~~~l~~~-----------~~~~~l~i~G~~~~~~~~~~~~~--~~~~------ 258 (375)
T cd03821 199 ILPDKRIILFLGRLHPKKGLDL-LIEAFAKLAER-----------FPDWHLVIAGPDEGGYRAELKQI--AAAL------ 258 (375)
T ss_pred CCCCCcEEEEEeCcchhcCHHH-HHHHHHHhhhh-----------cCCeEEEEECCCCcchHHHHHHH--HHhc------
Confidence 3566778889999999999877 77665554322 12568999998776655433322 1111
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeec
Q 003072 649 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 728 (850)
Q Consensus 649 Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG 728 (850)
...+ +|.|+....-+-...++..||+....|.. |..|++-+-+|..|++.|+|-.|...|+... .++++..
T Consensus 259 --~~~~--~v~~~g~~~~~~~~~~~~~adv~v~ps~~--e~~~~~~~Eama~G~PvI~~~~~~~~~~~~~---~~~~~~~ 329 (375)
T cd03821 259 --GLED--RVTFTGMLYGEDKAAALADADLFVLPSHS--ENFGIVVAEALACGTPVVTTDKVPWQELIEY---GCGWVVD 329 (375)
T ss_pred --Cccc--eEEEcCCCChHHHHHHHhhCCEEEecccc--CCCCcHHHHHHhcCCCEEEcCCCCHHHHhhc---CceEEeC
Confidence 2223 68888765544555677889999987776 9999999999999999999988887776643 5555554
Q ss_pred c
Q 003072 729 A 729 (850)
Q Consensus 729 ~ 729 (850)
.
T Consensus 330 ~ 330 (375)
T cd03821 330 D 330 (375)
T ss_pred C
Confidence 4
No 19
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=97.24 E-value=0.008 Score=71.05 Aligned_cols=204 Identities=20% Similarity=0.249 Sum_probs=135.7
Q ss_pred eeeeccCcchhHHHHHHHHHHhHhhhhhhhhhcCCCcccccccccccccccccChhHHHHHHhhcCCCccccCcchHHHh
Q 003072 454 NLCVVGSHAVNGVAEIHSEIVTNEVFNEFYKLWPEKFQNKTNGVTPRRWIRFCNPDLSSILTSWLGTEDWVTNTGKLAEL 533 (850)
Q Consensus 454 ~LAl~~S~~vNGVS~lH~ei~k~~~f~~f~~l~P~kf~niTNGV~~rrWl~~~Np~L~~Li~~~iG~~~W~~~~~~l~~l 533 (850)
..+...|+.+-.||.+ .+.+ -..++..-|++ =+-|||.+..|-.
T Consensus 221 ~~aa~~Ad~fttVS~i----t~~E-~~~Ll~~~pd~--ViPNGid~~~f~~----------------------------- 264 (590)
T cd03793 221 RAAAHCAHVFTTVSEI----TAYE-AEHLLKRKPDV--VLPNGLNVKKFSA----------------------------- 264 (590)
T ss_pred HHHHhhCCEEEECChH----HHHH-HHHHhCCCCCE--EeCCCcchhhccc-----------------------------
Confidence 3566777888888554 4433 33466777777 3459999988842
Q ss_pred hhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cC-CcCCCCcccccc-cccccc-cccccchhhhHHHHHHHHHhcChhh
Q 003072 534 RKFADNEDLQSQFRAAKRNNKMKVVSFIKEK-TG-YSVSPDAMFDIQ-VKRIHE-YKRQLMNILGIVYRYKKMKEMSAVE 609 (850)
Q Consensus 534 ~~~~~D~~f~~~w~~vK~~~K~~L~~~i~~~-~g-~~ldpd~lfd~~-~kR~he-YKRq~Lnil~ii~ry~~ik~~~~~~ 609 (850)
..+ ++..|...|.++.++++.. .| ..++|+.....| +=|+.- -|=-.+ ++.-+.|+++....+..+
T Consensus 265 -----~~e----~~~~~~~~k~ki~~f~~~~~~~~~~~~~d~tli~f~~GR~e~~nKGiDv-lIeAl~rLn~~l~~~~~~ 334 (590)
T cd03793 265 -----LHE----FQNLHAQSKEKINEFVRGHFYGHYDFDLDKTLYFFTAGRYEFSNKGADM-FLEALARLNYLLKVEGSD 334 (590)
T ss_pred -----chh----hhhhhHHhhhhhhHHHHHHHhhhcCCCCCCeEEEEEeeccccccCCHHH-HHHHHHHHHHHHHhcCCC
Confidence 111 5578899999999997643 23 458888777777 799965 688888 888889988876522221
Q ss_pred hhcccCCeEEEEeccCC-------CCcHHHHHHHHHHHHHhhhhcCC---------------------------------
Q 003072 610 RKAKFVPRVCIFGGKAF-------ATYVQAKRIVKFITDVGATVNHD--------------------------------- 649 (850)
Q Consensus 610 r~~~~~P~~~IFaGKA~-------P~y~~aK~iIk~I~~va~~vn~D--------------------------------- 649 (850)
. .+=-.+||-+|.. -+...-|++-.-++++...|.+.
T Consensus 335 ~---tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~ 411 (590)
T cd03793 335 T---TVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGKRLFEAALKGKLPDLEELLDKEDKVMLKRRIFALQ 411 (590)
T ss_pred C---eEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhhhhhhHhhccCCCChhhhcchhhHHHHHHHHHhhc
Confidence 1 1222356777744 12233333333333332222211
Q ss_pred -----c-------------------------CCCCcceEEEecCC--------ChhhhhhhccccccccccCCCccccCC
Q 003072 650 -----P-------------------------EIGDLLKVIFVPDY--------NVSVAELLIPASELSQHISTAGMEASG 691 (850)
Q Consensus 650 -----p-------------------------~i~~~lkVvFlenY--------~vslAe~lipg~Dv~~nip~ag~EASG 691 (850)
| .-.++.||||.|.| +++. +.++.|||+..--|.. |.-|
T Consensus 412 ~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L~~~~~~~g~~y-~E~~~g~dl~v~PS~y--E~fG 488 (590)
T cd03793 412 RHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFLSSTNPLLGLDY-EEFVRGCHLGVFPSYY--EPWG 488 (590)
T ss_pred cCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEcccccCCCCCcCCcch-HHHhhhceEEEecccc--CCCC
Confidence 1 12568999999998 5533 4568999999988877 9999
Q ss_pred CccchhhcccceEeeecc
Q 003072 692 TSNMKFAMNGCILIGTLD 709 (850)
Q Consensus 692 Ts~MK~amNG~l~lstlD 709 (850)
-.-+-+|.-|++.|+|--
T Consensus 489 ~~~lEAma~G~PvI~t~~ 506 (590)
T cd03793 489 YTPAECTVMGIPSITTNL 506 (590)
T ss_pred cHHHHHHHcCCCEEEccC
Confidence 999999999999999955
No 20
>PLN00142 sucrose synthase
Probab=97.24 E-value=0.0037 Score=76.23 Aligned_cols=144 Identities=13% Similarity=0.085 Sum_probs=97.6
Q ss_pred HcCCcCCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEE-EEeccCCCC---cHHHHHHHHHH
Q 003072 564 KTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVC-IFGGKAFAT---YVQAKRIVKFI 639 (850)
Q Consensus 564 ~~g~~ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~-IFaGKA~P~---y~~aK~iIk~I 639 (850)
..|..-+++..+++++=|+..+|.... ++..+.++.++. + ...+ |.||...|. +...+..++.+
T Consensus 564 ~lg~l~~~~kpvIl~VGRL~~~KGid~-LIeA~a~l~~l~---~--------~~~LVIVGgg~d~~~s~d~ee~~el~~L 631 (815)
T PLN00142 564 HIGYLKDRKKPIIFSMARLDRVKNLTG-LVEWYGKNKRLR---E--------LVNLVVVGGFIDPSKSKDREEIAEIKKM 631 (815)
T ss_pred HhCCccCCCCcEEEEEecCcccCCHHH-HHHHHHHHHHhC---C--------CcEEEEEECCccccccccHHHHHHHHHH
Confidence 456555788878999999999999987 666655443321 1 2344 445542332 33333444555
Q ss_pred HHHhhhhcCCcCCCCcceEEEecC---C--ChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccccccc
Q 003072 640 TDVGATVNHDPEIGDLLKVIFVPD---Y--NVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVE 714 (850)
Q Consensus 640 ~~va~~vn~Dp~i~~~lkVvFlen---Y--~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvE 714 (850)
.++++ +-.+.+ +|.|+.. + +-.+.+.+-.++|+-.+.|. .|+.|.+-+-||.-|++.|+|-.|-..|
T Consensus 632 ~~La~----~lgL~~--~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~--~EgFGLvvLEAMA~GlPVVATdvGG~~E 703 (815)
T PLN00142 632 HSLIE----KYNLKG--QFRWIAAQTNRVRNGELYRYIADTKGAFVQPAL--YEAFGLTVVEAMTCGLPTFATCQGGPAE 703 (815)
T ss_pred HHHHH----HcCCCC--cEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCc--ccCCCHHHHHHHHcCCCEEEcCCCCHHH
Confidence 55554 333556 7888753 2 12455555557899988765 7999999999999999999999999999
Q ss_pred ccccccccceeeecc
Q 003072 715 IRQEVGEENFFLFGA 729 (850)
Q Consensus 715 i~e~~g~eN~f~fG~ 729 (850)
|.+.. +|+|++-.
T Consensus 704 IV~dG--~tG~LV~P 716 (815)
T PLN00142 704 IIVDG--VSGFHIDP 716 (815)
T ss_pred HhcCC--CcEEEeCC
Confidence 88654 88999864
No 21
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=97.22 E-value=0.0041 Score=75.69 Aligned_cols=146 Identities=16% Similarity=0.176 Sum_probs=100.3
Q ss_pred HHcCCcCCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCC---CcHHHHHHHHHH
Q 003072 563 EKTGYSVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFA---TYVQAKRIVKFI 639 (850)
Q Consensus 563 ~~~g~~ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P---~y~~aK~iIk~I 639 (850)
+..|...+|+.-+++++=|+...|.... ++..+.+..++.. ...-+|.||...+ .+...+..++.+
T Consensus 540 ~~~G~l~d~~kpiIl~VGRL~~~KGid~-LIeA~~~l~~l~~----------~~~LVIVGGg~~~~~s~d~ee~~~i~~L 608 (784)
T TIGR02470 540 EHYGYLKDPNKPIIFSMARLDRVKNLTG-LVECYGRSPKLRE----------LVNLVVVAGKLDAKESKDREEQAEIEKM 608 (784)
T ss_pred HHhCCCCCCCCcEEEEEeCCCccCCHHH-HHHHHHHhHhhCC----------CeEEEEEeCCcccccccchhHHHHHHHH
Confidence 4567777899999999999999999877 6555444333321 1344566776442 344445566666
Q ss_pred HHHhhhhcCCcCCCCcceEEEecCC--Chh---hhhhhccccccccccCCCccccCCCccchhhcccceEeeeccccccc
Q 003072 640 TDVGATVNHDPEIGDLLKVIFVPDY--NVS---VAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVE 714 (850)
Q Consensus 640 ~~va~~vn~Dp~i~~~lkVvFlenY--~vs---lAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvE 714 (850)
.++++. -.+.+ +|.|+--. ... +.+.+-.++||-.+.|. .|+.|-.-+-||.-|.+.|+|-.|--.|
T Consensus 609 ~~la~~----~gL~g--~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~--~EpFGLvvLEAMAcGlPVVAT~~GG~~E 680 (784)
T TIGR02470 609 HNLIDQ----YQLHG--QIRWIGAQLNRVRNGELYRYIADTKGIFVQPAL--YEAFGLTVLEAMTCGLPTFATRFGGPLE 680 (784)
T ss_pred HHHHHH----hCCCC--eEEEccCcCCcccHHHHHHHhhccCcEEEECCc--ccCCCHHHHHHHHcCCCEEEcCCCCHHH
Confidence 666652 23556 78876521 123 33333446789988775 7999999999999999999999999999
Q ss_pred ccccccccceeeecc
Q 003072 715 IRQEVGEENFFLFGA 729 (850)
Q Consensus 715 i~e~~g~eN~f~fG~ 729 (850)
|.+. +.|+|++-.
T Consensus 681 iV~d--g~tGfLVdp 693 (784)
T TIGR02470 681 IIQD--GVSGFHIDP 693 (784)
T ss_pred HhcC--CCcEEEeCC
Confidence 8765 378888854
No 22
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=97.21 E-value=0.0035 Score=67.07 Aligned_cols=133 Identities=17% Similarity=0.142 Sum_probs=92.0
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003072 569 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 648 (850)
Q Consensus 569 ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 648 (850)
++++....+++-|+..+|...+ ++..+.++ .. +.++++.|...........+.+++..++.
T Consensus 197 ~~~~~~~i~~~Grl~~~Kg~~~-li~a~~~l---~~-----------~~~l~i~g~g~~~~~~~~~~~~~~~~~~~---- 257 (388)
T TIGR02149 197 IDRSRPYILFVGRITRQKGVPH-LLDAVHYI---PK-----------DVQVVLCAGAPDTPEVAEEVRQAVALLDR---- 257 (388)
T ss_pred CCCCceEEEEEcccccccCHHH-HHHHHHHH---hh-----------cCcEEEEeCCCCcHHHHHHHHHHHHHhcc----
Confidence 4667778889999999999887 76655443 11 23455655443333334445555544431
Q ss_pred CcCCCCcceEEEecC-CChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeee
Q 003072 649 DPEIGDLLKVIFVPD-YNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 727 (850)
Q Consensus 649 Dp~i~~~lkVvFlen-Y~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~f 727 (850)
. .+ +|+|+.. ++-+-...++.+||+-...|. .|..|.+-+-+|.-|++.|+|-.|...|+.+. +.|++++
T Consensus 258 ~---~~--~v~~~~~~~~~~~~~~~~~~aDv~v~ps~--~e~~g~~~lEA~a~G~PvI~s~~~~~~e~i~~--~~~G~~~ 328 (388)
T TIGR02149 258 N---RT--GIIWINKMLPKEELVELLSNAEVFVCPSI--YEPLGIVNLEAMACGTPVVASATGGIPEVVVD--GETGFLV 328 (388)
T ss_pred c---cC--ceEEecCCCCHHHHHHHHHhCCEEEeCCc--cCCCChHHHHHHHcCCCEEEeCCCCHHHHhhC--CCceEEc
Confidence 1 11 4788765 566667788899999988775 59999999999999999999988888887654 3677777
Q ss_pred cc
Q 003072 728 GA 729 (850)
Q Consensus 728 G~ 729 (850)
-.
T Consensus 329 ~~ 330 (388)
T TIGR02149 329 PP 330 (388)
T ss_pred CC
Confidence 43
No 23
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=97.19 E-value=0.0057 Score=66.40 Aligned_cols=136 Identities=17% Similarity=0.130 Sum_probs=93.5
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCC-CcHHHHHHHHHHHHHhhhhc
Q 003072 569 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFA-TYVQAKRIVKFITDVGATVN 647 (850)
Q Consensus 569 ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P-~y~~aK~iIk~I~~va~~vn 647 (850)
++++....+++-|+..+|...+ ++..+.++ ++..+. ...+++++|...+ +...-..+.+++...
T Consensus 215 ~~~~~~~i~~~G~l~~~K~~~~-li~a~~~l---~~~~~~------~~~~l~ivG~~~~~g~~~~~~l~~~~~~~----- 279 (405)
T TIGR03449 215 LPLDTKVVAFVGRIQPLKAPDV-LLRAVAEL---LDRDPD------RNLRVIVVGGPSGSGLATPDALIELAAEL----- 279 (405)
T ss_pred CCCCCcEEEEecCCCcccCHHH-HHHHHHHH---HhhCCC------cceEEEEEeCCCCCcchHHHHHHHHHHHc-----
Confidence 4567778899999999998877 66655543 220111 1267888886543 213333444444332
Q ss_pred CCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeee
Q 003072 648 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 727 (850)
Q Consensus 648 ~Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~f 727 (850)
.+.+ +|.|+..-.-+-...++.+||+-...|. .|..|++-+-+|.-|++.|+|-.|...|+.++. .++|++
T Consensus 280 ---~l~~--~v~~~g~~~~~~~~~~l~~ad~~v~ps~--~E~~g~~~lEAma~G~Pvi~~~~~~~~e~i~~~--~~g~~~ 350 (405)
T TIGR03449 280 ---GIAD--RVRFLPPRPPEELVHVYRAADVVAVPSY--NESFGLVAMEAQACGTPVVAARVGGLPVAVADG--ETGLLV 350 (405)
T ss_pred ---CCCc--eEEECCCCCHHHHHHHHHhCCEEEECCC--CCCcChHHHHHHHcCCCEEEecCCCcHhhhccC--CceEEC
Confidence 2333 6888875555556678999999988766 589999999999999999999989888766543 677776
Q ss_pred c
Q 003072 728 G 728 (850)
Q Consensus 728 G 728 (850)
.
T Consensus 351 ~ 351 (405)
T TIGR03449 351 D 351 (405)
T ss_pred C
Confidence 4
No 24
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.16 E-value=0.0011 Score=63.51 Aligned_cols=120 Identities=18% Similarity=0.105 Sum_probs=90.2
Q ss_pred ccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcce
Q 003072 578 QVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLLK 657 (850)
Q Consensus 578 ~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~i~~~lk 657 (850)
++-|+..+|...+ ++..+.+..+- ....+++|.|+..+.+...+.+. .. ...+ +
T Consensus 109 ~~g~~~~~k~~~~-~~~a~~~l~~~-----------~~~~~~~i~G~~~~~~~~~~~~~----~~--------~~~~--~ 162 (229)
T cd01635 109 FVGRLAPEKGLDD-LIEAFALLKER-----------GPDLKLVIAGDGPEREYLEELLA----AL--------LLLD--R 162 (229)
T ss_pred EEEeecccCCHHH-HHHHHHHHHHh-----------CCCeEEEEEeCCCChHHHHHHHH----hc--------CCcc--c
Confidence 8889999998877 66555554321 12578999999988776665521 11 1222 7
Q ss_pred EEEecCC-ChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeee
Q 003072 658 VIFVPDY-NVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 727 (850)
Q Consensus 658 VvFlenY-~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~f 727 (850)
|.|++.+ ..+..+.+..+||+....|+. |+.|++-+-+|..|.+.|+|-+|++-|+.++ .+++|+|
T Consensus 163 v~~~~~~~~~~~~~~~~~~~di~l~~~~~--e~~~~~~~Eam~~g~pvi~s~~~~~~e~i~~--~~~g~~~ 229 (229)
T cd01635 163 VIFLGGLDPEELLALLLAAADVFVLPSLR--EGFGLVVLEAMACGLPVIATDVGGPPEIVED--GLTGLLV 229 (229)
T ss_pred EEEeCCCCcHHHHHHHhhcCCEEEecccc--cCcChHHHHHHhCCCCEEEcCCCCcceEEEC--CCceEEC
Confidence 9999887 567777888889999987775 5999999999999999999999999986544 3777765
No 25
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.15 E-value=0.001 Score=63.54 Aligned_cols=133 Identities=20% Similarity=0.210 Sum_probs=95.7
Q ss_pred cCCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhc
Q 003072 568 SVSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVN 647 (850)
Q Consensus 568 ~ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn 647 (850)
..+.+..+..++-|+..+|+..+ ++..+.++.+=+ .....+++.|. ....+.+..++....
T Consensus 10 ~~~~~~~~il~~g~~~~~K~~~~-li~a~~~l~~~~----------~~~~~l~i~G~----~~~~~~~~~~~~~~~---- 70 (172)
T PF00534_consen 10 KIPDKKKIILFIGRLDPEKGIDL-LIEAFKKLKEKK----------NPNYKLVIVGD----GEYKKELKNLIEKLN---- 70 (172)
T ss_dssp TT-TTSEEEEEESESSGGGTHHH-HHHHHHHHHHHH----------HTTEEEEEESH----CCHHHHHHHHHHHTT----
T ss_pred CCCCCCeEEEEEecCccccCHHH-HHHHHHHHHhhc----------CCCeEEEEEcc----ccccccccccccccc----
Confidence 35678889999999999999999 888777664321 12568999991 112223333333221
Q ss_pred CCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeee
Q 003072 648 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 727 (850)
Q Consensus 648 ~Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~f 727 (850)
+.. +|.|+....-.-...++..||+..+.|+. |..|++-+-+|..|++.|++--|..-|+.... .|+++|
T Consensus 71 ----~~~--~i~~~~~~~~~~l~~~~~~~di~v~~s~~--e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~~~~--~~g~~~ 140 (172)
T PF00534_consen 71 ----LKE--NIIFLGYVPDDELDELYKSSDIFVSPSRN--EGFGLSLLEAMACGCPVIASDIGGNNEIINDG--VNGFLF 140 (172)
T ss_dssp ----CGT--TEEEEESHSHHHHHHHHHHTSEEEE-BSS--BSS-HHHHHHHHTT-EEEEESSTHHHHHSGTT--TSEEEE
T ss_pred ----ccc--cccccccccccccccccccceeccccccc--cccccccccccccccceeeccccCCceeeccc--cceEEe
Confidence 222 58888877655667778889999999999 99999999999999999999989999988766 488888
Q ss_pred cc
Q 003072 728 GA 729 (850)
Q Consensus 728 G~ 729 (850)
-.
T Consensus 141 ~~ 142 (172)
T PF00534_consen 141 DP 142 (172)
T ss_dssp ST
T ss_pred CC
Confidence 54
No 26
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=97.03 E-value=0.0038 Score=63.10 Aligned_cols=129 Identities=18% Similarity=0.011 Sum_probs=91.9
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003072 570 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 649 (850)
Q Consensus 570 dpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 649 (850)
+++....+++-|+..+|+..+ ++..+.++.+- ..+.++++.|...+.+...+. ++....
T Consensus 185 ~~~~~~i~~~G~~~~~k~~~~-li~~~~~l~~~-----------~~~~~l~i~G~~~~~~~~~~~---~~~~~~------ 243 (359)
T cd03808 185 PEDDPVFLFVARLLKDKGIDE-LLEAARILKAK-----------GPNVRLLLVGDGDEENPAAIL---EIEKLG------ 243 (359)
T ss_pred CCCCcEEEEEeccccccCHHH-HHHHHHHHHhc-----------CCCeEEEEEcCCCcchhhHHH---HHHhcC------
Confidence 456788899999999999877 66655443221 125789999998877766544 222111
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeecc
Q 003072 650 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 729 (850)
Q Consensus 650 p~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG~ 729 (850)
... +|.|+.. .+-...++..||+-...|.. |..|++-+-+|..|++.|+|-.|..-|+.++ .++++++..
T Consensus 244 --~~~--~v~~~g~--~~~~~~~~~~adi~i~ps~~--e~~~~~~~Ea~~~G~Pvi~s~~~~~~~~i~~--~~~g~~~~~ 313 (359)
T cd03808 244 --LEG--RVEFLGF--RDDVPELLAAADVFVLPSYR--EGLPRVLLEAMAMGRPVIATDVPGCREAVID--GVNGFLVPP 313 (359)
T ss_pred --Ccc--eEEEeec--cccHHHHHHhccEEEecCcc--cCcchHHHHHHHcCCCEEEecCCCchhhhhc--CcceEEECC
Confidence 122 6777765 44556788899998876665 9999999999999999999977777776654 367777754
No 27
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.00 E-value=0.0074 Score=68.55 Aligned_cols=123 Identities=15% Similarity=0.084 Sum_probs=89.5
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003072 570 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 649 (850)
Q Consensus 570 dpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 649 (850)
+++....+++-|+..+|.... ++..+.++.+- ....++++.|.........+++-+++.+.+
T Consensus 290 ~~~~~~i~~vGrl~~~Kg~~~-li~a~~~l~~~-----------~p~~~l~IvG~g~~~~~~~~e~~~li~~l~------ 351 (475)
T cd03813 290 EKEPPVVGLIGRVVPIKDIKT-FIRAAAIVRKK-----------IPDAEGWVIGPTDEDPEYAEECRELVESLG------ 351 (475)
T ss_pred CCCCcEEEEEeccccccCHHH-HHHHHHHHHHh-----------CCCeEEEEECCCCcChHHHHHHHHHHHHhC------
Confidence 356778999999999999877 66655443221 124678888876444445566666665543
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccc
Q 003072 650 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEV 719 (850)
Q Consensus 650 p~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~ 719 (850)
+.+ +|.|+. ...+.+ +++++|+-...|. .|+.|++-+-+|.-|++.|+|--|...|+.++.
T Consensus 352 --l~~--~V~f~G--~~~v~~-~l~~aDv~vlpS~--~Eg~p~~vlEAma~G~PVVatd~g~~~elv~~~ 412 (475)
T cd03813 352 --LED--NVKFTG--FQNVKE-YLPKLDVLVLTSI--SEGQPLVILEAMAAGIPVVATDVGSCRELIEGA 412 (475)
T ss_pred --CCC--eEEEcC--CccHHH-HHHhCCEEEeCch--hhcCChHHHHHHHcCCCEEECCCCChHHHhcCC
Confidence 233 788988 445554 5689999998876 599999999999999999999888888877654
No 28
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=96.99 E-value=0.0047 Score=66.23 Aligned_cols=147 Identities=18% Similarity=0.181 Sum_probs=101.2
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003072 569 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 648 (850)
Q Consensus 569 ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 648 (850)
..++..+.+++-|+.+.|.+.+ ++..+.++.+-. . . .....+++.|...+.....-...+.+.+.++..
T Consensus 207 ~~~~~~~i~~~grl~~~Kg~~~-ll~a~~~l~~~~---~-~----~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~-- 275 (392)
T cd03805 207 PKSGKKTFLSINRFERKKNIAL-AIEAFAILKDKL---A-E----FKNVRLVIAGGYDPRVAENVEYLEELQRLAEEL-- 275 (392)
T ss_pred cCCCceEEEEEeeecccCChHH-HHHHHHHHHhhc---c-c----ccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHh--
Confidence 3467788999999999999988 877766653321 0 0 125678888877665433333333343333310
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeec
Q 003072 649 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 728 (850)
Q Consensus 649 Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG 728 (850)
..+.+ +|.|+....-.....++.+||+....|. .|..|.+-+-+|..|++.|+|--|...|+... ..+++++.
T Consensus 276 -~~l~~--~V~f~g~~~~~~~~~~l~~ad~~l~~s~--~E~~g~~~lEAma~G~PvI~s~~~~~~e~i~~--~~~g~~~~ 348 (392)
T cd03805 276 -LLLED--QVIFLPSISDSQKELLLSSARALLYTPS--NEHFGIVPLEAMYAGKPVIACNSGGPLETVVD--GETGFLCE 348 (392)
T ss_pred -cCCCc--eEEEeCCCChHHHHHHHhhCeEEEECCC--cCCCCchHHHHHHcCCCEEEECCCCcHHHhcc--CCceEEeC
Confidence 12334 7999988766666678899999888665 59999999999999999999987877776643 25788775
Q ss_pred cchhh
Q 003072 729 ARAHE 733 (850)
Q Consensus 729 ~~~~E 733 (850)
.+.++
T Consensus 349 ~~~~~ 353 (392)
T cd03805 349 PTPEE 353 (392)
T ss_pred CCHHH
Confidence 44433
No 29
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=96.93 E-value=0.019 Score=62.05 Aligned_cols=134 Identities=15% Similarity=0.083 Sum_probs=90.5
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003072 569 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 648 (850)
Q Consensus 569 ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 648 (850)
++++..+.+++=|++..|...+ ++..+.++.+.. ...+++++|...+.+...+.+.+.+.+..
T Consensus 186 ~~~~~~~i~~vgrl~~~Kg~~~-ll~a~~~l~~~~-----------~~~~l~i~G~g~~~~~~~~~~~~~~~~~~----- 248 (372)
T cd03792 186 IDPERPYITQVSRFDPWKDPFG-VIDAYRKVKERV-----------PDPQLVLVGSGATDDPEGWIVYEEVLEYA----- 248 (372)
T ss_pred CCCCCcEEEEEeccccccCcHH-HHHHHHHHHhhC-----------CCCEEEEEeCCCCCCchhHHHHHHHHHHh-----
Confidence 5778889999999999999998 776655543321 13578888876554433444444443321
Q ss_pred CcCCCCcceEEEecCC--ChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceee
Q 003072 649 DPEIGDLLKVIFVPDY--NVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFL 726 (850)
Q Consensus 649 Dp~i~~~lkVvFlenY--~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~ 726 (850)
...+ +|+|+... +-.....++.+||+-...|+ .|..|-+-+-+|..|.+.|+|--|...|+.+ .+.++++
T Consensus 249 --~~~~--~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~--~Eg~g~~~lEA~a~G~Pvv~s~~~~~~~~i~--~~~~g~~ 320 (372)
T cd03792 249 --EGDP--DIHVLTLPPVSDLEVNALQRASTVVLQKSI--REGFGLTVTEALWKGKPVIAGPVGGIPLQIE--DGETGFL 320 (372)
T ss_pred --CCCC--CeEEEecCCCCHHHHHHHHHhCeEEEeCCC--ccCCCHHHHHHHHcCCCEEEcCCCCchhhcc--cCCceEE
Confidence 1223 57787665 44556678999999987665 6999999999999999999996555555432 2255555
Q ss_pred e
Q 003072 727 F 727 (850)
Q Consensus 727 f 727 (850)
+
T Consensus 321 ~ 321 (372)
T cd03792 321 V 321 (372)
T ss_pred e
Confidence 4
No 30
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=96.79 E-value=0.015 Score=61.68 Aligned_cols=134 Identities=13% Similarity=0.083 Sum_probs=88.1
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEecc-CCCCcHHHHHHHHHHHHHhhhhcC
Q 003072 570 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGK-AFATYVQAKRIVKFITDVGATVNH 648 (850)
Q Consensus 570 dpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGK-A~P~y~~aK~iIk~I~~va~~vn~ 648 (850)
.++....+++-|+...|...+ ++..+.++.+. . .+.++++.|. ..+.......-++.+ .+..
T Consensus 217 ~~~~~~i~~~gr~~~~k~~~~-ll~a~~~l~~~---~--------~~~~l~i~G~~~~~~~~~~~~~~~~~---~~~~-- 279 (398)
T cd03800 217 DPDKPRILAVGRLDPRKGIDT-LIRAYAELPEL---R--------ERANLVIVGGPRDDILAMDEEELREL---AREL-- 279 (398)
T ss_pred CCCCcEEEEEcccccccCHHH-HHHHHHHHHHh---C--------CCeEEEEEECCCCcchhhhhHHHHHH---HHhc--
Confidence 456677889999998888766 66665554322 1 1345555554 333222222222222 2211
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeec
Q 003072 649 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 728 (850)
Q Consensus 649 Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG 728 (850)
.+.+ +|.|++-..-+-...++..||+-...|. .|..|.+-+-+|..|.+.|++-.|..-|+.++. +++++|.
T Consensus 280 --~~~~--~v~~~g~~~~~~~~~~~~~adi~l~ps~--~e~~~~~l~Ea~a~G~Pvi~s~~~~~~e~i~~~--~~g~~~~ 351 (398)
T cd03800 280 --GVID--RVDFPGRVSREDLPALYRAADVFVNPAL--YEPFGLTALEAMACGLPVVATAVGGPRDIVVDG--VTGLLVD 351 (398)
T ss_pred --CCCc--eEEEeccCCHHHHHHHHHhCCEEEeccc--ccccCcHHHHHHhcCCCEEECCCCCHHHHccCC--CCeEEeC
Confidence 1223 6889888776666777888999887665 489999999999999999999888887776543 5677664
No 31
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=96.65 E-value=0.012 Score=64.69 Aligned_cols=134 Identities=15% Similarity=0.135 Sum_probs=93.1
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003072 570 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 649 (850)
Q Consensus 570 dpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 649 (850)
+++....+++-|+...|...+ ++..+.. +++ . ....+++++|.. |.. ..+-+++.+.
T Consensus 190 ~~~~~~i~~~grl~~~Kg~~~-li~a~~~---l~~-~-------~~~~~l~i~G~g-~~~---~~l~~~~~~~------- 246 (398)
T cd03796 190 DNDKITIVVISRLVYRKGIDL-LVGIIPE---ICK-K-------HPNVRFIIGGDG-PKR---ILLEEMREKY------- 246 (398)
T ss_pred CCCceEEEEEeccchhcCHHH-HHHHHHH---HHh-h-------CCCEEEEEEeCC-chH---HHHHHHHHHh-------
Confidence 357788999999999999887 6665543 332 1 125688899964 322 2233333322
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeecc
Q 003072 650 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 729 (850)
Q Consensus 650 p~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG~ 729 (850)
.+.+ +|.|+...+-+-...++++||+-...|. .|..|.+-+-||..|++-|+|--|...|+.++. ++++...
T Consensus 247 -~l~~--~v~~~G~~~~~~~~~~l~~ad~~v~pS~--~E~~g~~~~EAma~G~PVI~s~~gg~~e~i~~~---~~~~~~~ 318 (398)
T cd03796 247 -NLQD--RVELLGAVPHERVRDVLVQGHIFLNTSL--TEAFCIAIVEAASCGLLVVSTRVGGIPEVLPPD---MILLAEP 318 (398)
T ss_pred -CCCC--eEEEeCCCCHHHHHHHHHhCCEEEeCCh--hhccCHHHHHHHHcCCCEEECCCCCchhheeCC---ceeecCC
Confidence 2344 7888876666666778899999998776 599999999999999999999989888877542 2344443
Q ss_pred chhhh
Q 003072 730 RAHEI 734 (850)
Q Consensus 730 ~~~EV 734 (850)
+.+++
T Consensus 319 ~~~~l 323 (398)
T cd03796 319 DVESI 323 (398)
T ss_pred CHHHH
Confidence 44443
No 32
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=96.64 E-value=0.018 Score=58.69 Aligned_cols=127 Identities=20% Similarity=0.153 Sum_probs=86.4
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003072 569 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 648 (850)
Q Consensus 569 ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 648 (850)
++++..+.+++-|+..+|+... ++..+.++.+- ..+.++++.|+...... -+..++ .
T Consensus 189 ~~~~~~~i~~~G~~~~~K~~~~-li~a~~~l~~~-----------~~~~~l~i~G~~~~~~~-~~~~~~------~---- 245 (365)
T cd03807 189 LPEDTFLIGIVARLHPQKDHAT-LLRAAALLLKK-----------FPNARLLLVGDGPDRAN-LELLAL------K---- 245 (365)
T ss_pred CCCCCeEEEEecccchhcCHHH-HHHHHHHHHHh-----------CCCeEEEEecCCcchhH-HHHHHH------H----
Confidence 4677788899999999999876 66655443221 12578999998654332 222222 0
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeec
Q 003072 649 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 728 (850)
Q Consensus 649 Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG 728 (850)
+-.+.+ +|.|+.. ++-...++..||+-...|.. |..|++-+-||.-|++.|++--|...|+.++ +++++.
T Consensus 246 ~~~~~~--~v~~~g~--~~~~~~~~~~adi~v~ps~~--e~~~~~~~Ea~a~g~PvI~~~~~~~~e~~~~----~g~~~~ 315 (365)
T cd03807 246 ELGLED--KVILLGE--RSDVPALLNALDVFVLSSLS--EGFPNVLLEAMACGLPVVATDVGDNAELVGD----TGFLVP 315 (365)
T ss_pred hcCCCc--eEEEccc--cccHHHHHHhCCEEEeCCcc--ccCCcHHHHHHhcCCCEEEcCCCChHHHhhc----CCEEeC
Confidence 111223 5777653 23345678999999887666 9999999999999999999988887776643 566654
No 33
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.61 E-value=0.028 Score=59.43 Aligned_cols=127 Identities=18% Similarity=0.248 Sum_probs=87.4
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003072 569 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 648 (850)
Q Consensus 569 ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 648 (850)
++++....+++-|+..+|.... ++..+.+ +++ ..|.++++.|.. |.. +.+.+++...+
T Consensus 193 ~~~~~~~il~~g~l~~~K~~~~-li~a~~~---l~~---------~~~~~l~i~G~g-~~~---~~~~~~~~~~~----- 250 (371)
T cd04962 193 APEGEKVLIHISNFRPVKRIDD-VIRIFAK---VRK---------EVPARLLLVGDG-PER---SPAERLARELG----- 250 (371)
T ss_pred CCCCCeEEEEecccccccCHHH-HHHHHHH---HHh---------cCCceEEEEcCC-cCH---HHHHHHHHHcC-----
Confidence 4667778889999999999877 6654433 432 126688888865 222 23333332221
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeec
Q 003072 649 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 728 (850)
Q Consensus 649 Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG 728 (850)
+.+ +|.|+... +-...++.+||+-...|+ .|+.|.+-+-+|..|++.|+|--|...|+.++. .|+|+|-
T Consensus 251 ---~~~--~v~~~g~~--~~~~~~~~~~d~~v~ps~--~E~~~~~~~EAma~g~PvI~s~~~~~~e~i~~~--~~G~~~~ 319 (371)
T cd04962 251 ---LQD--DVLFLGKQ--DHVEELLSIADLFLLPSE--KESFGLAALEAMACGVPVVASNAGGIPEVVKHG--ETGFLVD 319 (371)
T ss_pred ---CCc--eEEEecCc--ccHHHHHHhcCEEEeCCC--cCCCccHHHHHHHcCCCEEEeCCCCchhhhcCC--CceEEcC
Confidence 233 68888743 334566889999998875 799999999999999999999888777665443 5666663
No 34
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=96.58 E-value=0.025 Score=63.18 Aligned_cols=129 Identities=18% Similarity=0.111 Sum_probs=89.8
Q ss_pred CcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcC
Q 003072 572 DAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPE 651 (850)
Q Consensus 572 d~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~ 651 (850)
+.+..+++-|+.++|.... ++..+.++ ++ . ..+.++++.|.- . .-.++-+++.+.+
T Consensus 221 ~~~~il~vGrl~~~Kg~~~-ll~a~~~l---~~-~-------~~~~~l~ivG~G---~-~~~~l~~~~~~~~-------- 276 (406)
T PRK15427 221 TPLEIISVARLTEKKGLHV-AIEACRQL---KE-Q-------GVAFRYRILGIG---P-WERRLRTLIEQYQ-------- 276 (406)
T ss_pred CCeEEEEEeCcchhcCHHH-HHHHHHHH---Hh-h-------CCCEEEEEEECc---h-hHHHHHHHHHHcC--------
Confidence 3456788999999999887 76665443 32 1 124677777753 1 2234445554432
Q ss_pred CCCcceEEEecCCChhhhhhhccccccccccCCCc----cccCCCccchhhcccceEeeecccccccccccccccceeee
Q 003072 652 IGDLLKVIFVPDYNVSVAELLIPASELSQHISTAG----MEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 727 (850)
Q Consensus 652 i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag----~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~f 727 (850)
+.+ +|.|+.-..-+-...++..||+-...|..+ +|+.|..-|-+|.-|.+.|+|-.|...|+.+.. +|+|++
T Consensus 277 l~~--~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g~~E~v~~~--~~G~lv 352 (406)
T PRK15427 277 LED--VVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEAD--KSGWLV 352 (406)
T ss_pred CCC--eEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCCchhhhcCC--CceEEe
Confidence 334 677776544444567889999999887653 688999999999999999999888888876543 678877
Q ss_pred c
Q 003072 728 G 728 (850)
Q Consensus 728 G 728 (850)
-
T Consensus 353 ~ 353 (406)
T PRK15427 353 P 353 (406)
T ss_pred C
Confidence 4
No 35
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.55 E-value=0.022 Score=62.43 Aligned_cols=137 Identities=15% Similarity=0.192 Sum_probs=90.1
Q ss_pred CCCCccccccccc-ccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHH----HH-HHHHHHHHH
Q 003072 569 VSPDAMFDIQVKR-IHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQ----AK-RIVKFITDV 642 (850)
Q Consensus 569 ldpd~lfd~~~kR-~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~----aK-~iIk~I~~v 642 (850)
+.++....+++=| +..+|...+ ++..+.++.+- . ....+++.|...|.|.. +. ..-+++..+
T Consensus 207 ~~~~~~~i~~vgR~l~~~Kg~~~-ll~a~~~l~~~---~--------~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~ 274 (396)
T cd03818 207 LTPGDEVITFVARNLEPYRGFHV-FMRALPRLLRA---R--------PDARVVIVGGDGVSYGAPPPDGESWKQHMLDEL 274 (396)
T ss_pred CCCCCeEEEEECCCcccccCHHH-HHHHHHHHHHH---C--------CCcEEEEEcCCCcccCCCCCCcccHHHHHHHHh
Confidence 4566677888877 999998877 76665544221 1 14578888875554321 11 111223333
Q ss_pred hhhhcCCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccccccccccccccc
Q 003072 643 GATVNHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEE 722 (850)
Q Consensus 643 a~~vn~Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~e 722 (850)
+...+ .+ +|.|+....-.-...++.+||+....|. .|..|.+-+-+|.-|++.|+|-.|...|+.+. ++
T Consensus 275 ~~~~~-----~~--~V~f~G~v~~~~~~~~l~~adv~v~~s~--~e~~~~~llEAmA~G~PVIas~~~g~~e~i~~--~~ 343 (396)
T cd03818 275 GGRLD-----LS--RVHFLGRVPYDQYLALLQVSDVHVYLTY--PFVLSWSLLEAMACGCLVVGSDTAPVREVITD--GE 343 (396)
T ss_pred hcccC-----cc--eEEEeCCCCHHHHHHHHHhCcEEEEcCc--ccccchHHHHHHHCCCCEEEcCCCCchhhccc--CC
Confidence 32111 12 7999987655555667899999987765 47778888999999999999988887777654 36
Q ss_pred ceeeec
Q 003072 723 NFFLFG 728 (850)
Q Consensus 723 N~f~fG 728 (850)
|++++-
T Consensus 344 ~G~lv~ 349 (396)
T cd03818 344 NGLLVD 349 (396)
T ss_pred ceEEcC
Confidence 777764
No 36
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=96.49 E-value=0.047 Score=56.46 Aligned_cols=135 Identities=12% Similarity=0.032 Sum_probs=86.9
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHH-HHHHHHHhhhhcC
Q 003072 570 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRI-VKFITDVGATVNH 648 (850)
Q Consensus 570 dpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~i-Ik~I~~va~~vn~ 648 (850)
.++....+++-|++++|.... ++..+.++.+- ..+.++++.|..++....-+.. .++|.+.
T Consensus 182 ~~~~~~i~~~G~~~~~K~~~~-ll~a~~~~~~~-----------~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~------ 243 (366)
T cd03822 182 LDGRPVLLTFGLLRPYKGLEL-LLEALPLLVAK-----------HPDVRLLVAGETHPDLERYRGEAYALAERL------ 243 (366)
T ss_pred CCCCeEEEEEeeccCCCCHHH-HHHHHHHHHhh-----------CCCeEEEEeccCccchhhhhhhhHhHHHhc------
Confidence 346677888999999998766 66655543221 1257899999877765443221 1223222
Q ss_pred CcCCCCcceEEEecC-CChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeee
Q 003072 649 DPEIGDLLKVIFVPD-YNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 727 (850)
Q Consensus 649 Dp~i~~~lkVvFlen-Y~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~f 727 (850)
.+.+ +|.|++. ..-+-...+++.||+-...|+...+..|..-+-||.-|.+.|+|-.|. .|... ...++++|
T Consensus 244 --~~~~--~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-~~~i~--~~~~g~~~ 316 (366)
T cd03822 244 --GLAD--RVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-AEEVL--DGGTGLLV 316 (366)
T ss_pred --CCCC--cEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-hheee--eCCCcEEE
Confidence 2333 7999988 455556678899999887655433355555667899999999997777 54332 23566666
Q ss_pred cc
Q 003072 728 GA 729 (850)
Q Consensus 728 G~ 729 (850)
..
T Consensus 317 ~~ 318 (366)
T cd03822 317 PP 318 (366)
T ss_pred cC
Confidence 43
No 37
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=96.48 E-value=0.033 Score=57.55 Aligned_cols=120 Identities=15% Similarity=0.042 Sum_probs=85.6
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003072 570 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 649 (850)
Q Consensus 570 dpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 649 (850)
.++....+++-|+..+|+..+ ++..+.. +++ . ..+.++++.|...+.+......+ ...
T Consensus 192 ~~~~~~i~~~G~~~~~K~~~~-~l~~~~~---~~~----~----~~~~~l~i~G~~~~~~~~~~~~~---~~~------- 249 (365)
T cd03809 192 LLPRPYFLYVGTIEPRKNLER-LLEAFAR---LPA----K----GPDPKLVIVGKRGWLNEELLARL---REL------- 249 (365)
T ss_pred CCCCCeEEEeCCCccccCHHH-HHHHHHH---HHH----h----cCCCCEEEecCCccccHHHHHHH---HHc-------
Confidence 456678889999999998776 6655444 332 0 11467888888777666554444 111
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccccccccc
Q 003072 650 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIR 716 (850)
Q Consensus 650 p~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~ 716 (850)
...+ +|.|+...+-.-...++..||+-...|+ .|..|.+-+-+|.-|++.|+|--|+..|+.
T Consensus 250 -~~~~--~v~~~g~~~~~~~~~~~~~~d~~l~ps~--~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~ 311 (365)
T cd03809 250 -GLGD--RVRFLGYVSDEELAALYRGARAFVFPSL--YEGFGLPVLEAMACGTPVIASNISSLPEVA 311 (365)
T ss_pred -CCCC--eEEECCCCChhHHHHHHhhhhhhcccch--hccCCCCHHHHhcCCCcEEecCCCCcccee
Confidence 1223 6888877766667788899999987665 488899999999999999999777776654
No 38
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=96.44 E-value=0.061 Score=54.16 Aligned_cols=131 Identities=16% Similarity=0.142 Sum_probs=88.5
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003072 570 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 649 (850)
Q Consensus 570 dpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 649 (850)
.++....+++-|+..+|.-.. ++..+. .++. . ....++++.|. -.....+.+++...
T Consensus 196 ~~~~~~i~~~g~~~~~k~~~~-~i~~~~---~~~~-~-------~~~~~l~i~G~----~~~~~~~~~~~~~~------- 252 (374)
T cd03801 196 PEDEPVILFVGRLVPRKGVDL-LLEALA---KLRK-E-------YPDVRLVIVGD----GPLREELEALAAEL------- 252 (374)
T ss_pred cCCCeEEEEecchhhhcCHHH-HHHHHH---HHhh-h-------cCCeEEEEEeC----cHHHHHHHHHHHHh-------
Confidence 456778889999998887655 544433 3432 0 12467888881 11222222333221
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeecc
Q 003072 650 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 729 (850)
Q Consensus 650 p~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG~ 729 (850)
...+ +|.|++...-+-...++..||+-.+.++. |+.|++-+-++..|++.|+|-.|+.-|+.+. ..+++++..
T Consensus 253 -~~~~--~v~~~g~~~~~~~~~~~~~~di~i~~~~~--~~~~~~~~Ea~~~g~pvI~~~~~~~~~~~~~--~~~g~~~~~ 325 (374)
T cd03801 253 -GLGD--RVTFLGFVPDEDLPALYAAADVFVLPSLY--EGFGLVLLEAMAAGLPVVASDVGGIPEVVED--GETGLLVPP 325 (374)
T ss_pred -CCCc--ceEEEeccChhhHHHHHHhcCEEEecchh--ccccchHHHHHHcCCcEEEeCCCChhHHhcC--CcceEEeCC
Confidence 2233 68888887656667778889999987777 9999999999999999999988888877654 367777654
Q ss_pred c
Q 003072 730 R 730 (850)
Q Consensus 730 ~ 730 (850)
.
T Consensus 326 ~ 326 (374)
T cd03801 326 G 326 (374)
T ss_pred C
Confidence 3
No 39
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=96.40 E-value=0.039 Score=61.99 Aligned_cols=139 Identities=15% Similarity=0.107 Sum_probs=89.4
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCC-CCcH--HHHHHHHHHHHHhhh
Q 003072 569 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAF-ATYV--QAKRIVKFITDVGAT 645 (850)
Q Consensus 569 ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~-P~y~--~aK~iIk~I~~va~~ 645 (850)
.+|+..+.+++=|+++.|.+.+ ++..+.++.+++. .|..+|++|... .... ..+...+.+..+++.
T Consensus 244 ~~~~~~~i~~vGrl~~~Kg~~~-li~A~~~l~~~~~----------~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~ 312 (439)
T TIGR02472 244 KDPEKPPILAISRPDRRKNIPS-LVEAYGRSPKLQE----------MANLVLVLGCRDDIRKMESQQREVLQKVLLLIDR 312 (439)
T ss_pred cccCCcEEEEEcCCcccCCHHH-HHHHHHhChhhhh----------hccEEEEeCCccccccccHHHHHHHHHHHHHHHH
Confidence 3566778899999999999988 7777665433331 133344566432 1111 222333333333331
Q ss_pred hcCCcCCCCcceEEEecCCChhhhhhhcccc----ccccccCCCccccCCCccchhhcccceEeeecccccccccccccc
Q 003072 646 VNHDPEIGDLLKVIFVPDYNVSVAELLIPAS----ELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGE 721 (850)
Q Consensus 646 vn~Dp~i~~~lkVvFlenY~vslAe~lipg~----Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~ 721 (850)
-.+.+ +|.|+....-+-...++++| |+-..-|. .|+.|.+-+-||.-|++.|+|--|...|+.+. .
T Consensus 313 ----~~l~~--~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~--~E~fg~~~lEAma~G~PvV~s~~gg~~eiv~~--~ 382 (439)
T TIGR02472 313 ----YDLYG--KVAYPKHHRPDDVPELYRLAARSRGIFVNPAL--TEPFGLTLLEAAACGLPIVATDDGGPRDIIAN--C 382 (439)
T ss_pred ----cCCCc--eEEecCCCCHHHHHHHHHHHhhcCCEEecccc--cCCcccHHHHHHHhCCCEEEeCCCCcHHHhcC--C
Confidence 23455 78888654444344555555 88776665 59999999999999999999988888887754 3
Q ss_pred cceeeec
Q 003072 722 ENFFLFG 728 (850)
Q Consensus 722 eN~f~fG 728 (850)
+|+|++-
T Consensus 383 ~~G~lv~ 389 (439)
T TIGR02472 383 RNGLLVD 389 (439)
T ss_pred CcEEEeC
Confidence 6788774
No 40
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=96.40 E-value=0.021 Score=71.42 Aligned_cols=188 Identities=14% Similarity=0.174 Sum_probs=119.4
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCc------HHHHHHHHHHHHH
Q 003072 569 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY------VQAKRIVKFITDV 642 (850)
Q Consensus 569 ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y------~~aK~iIk~I~~v 642 (850)
.+|+..++.++-|+...|.... ++..+.++.++.. ....++|.|+...... .....+.++|.++
T Consensus 475 ~~pdkpvIL~VGRL~p~KGi~~-LIeAf~~L~~l~~---------~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~~l 544 (1050)
T TIGR02468 475 TNPRKPMILALARPDPKKNITT-LVKAFGECRPLRE---------LANLTLIMGNRDDIDEMSSGSSSVLTSVLKLIDKY 544 (1050)
T ss_pred ccCCCcEEEEEcCCccccCHHH-HHHHHHHhHhhcc---------CCCEEEEEecCchhhhhhccchHHHHHHHHHHHHh
Confidence 3688889999999999999988 7776665544321 1123445544221110 1123344444333
Q ss_pred hhhhcCCcCCCCcceEEEecCCChhhhhhhcccc----ccccccCCCccccCCCccchhhcccceEeeeccccccccccc
Q 003072 643 GATVNHDPEIGDLLKVIFVPDYNVSVAELLIPAS----ELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQE 718 (850)
Q Consensus 643 a~~vn~Dp~i~~~lkVvFlenY~vslAe~lipg~----Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~ 718 (850)
.+.+ +|.|+.--.-+-...++..| ||-.+.|. .|.-|..-+-||.-|.+.|+|-.|...||.+.
T Consensus 545 --------gL~g--~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~--~EgFGLvlLEAMAcGlPVVASdvGG~~EII~~ 612 (1050)
T TIGR02468 545 --------DLYG--QVAYPKHHKQSDVPDIYRLAAKTKGVFINPAF--IEPFGLTLIEAAAHGLPMVATKNGGPVDIHRV 612 (1050)
T ss_pred --------CCCC--eEEecCCCCHHHHHHHHHHhhhcCCeeeCCcc--cCCCCHHHHHHHHhCCCEEEeCCCCcHHHhcc
Confidence 3455 78887532222223344444 68877666 69999999999999999999999999998865
Q ss_pred ccccceeeeccchhhhhhhhhhcCCCCCCCChhHHHHHHHHhcCCCCcccHHHHHHHhccCCCCCCCcccccccchhhHH
Q 003072 719 VGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVGKDFPSYL 798 (850)
Q Consensus 719 ~g~eN~f~fG~~~~EV~~l~~~~~~~~~~~~~~l~~v~~~i~~g~f~~~~~~~l~~~L~~~~~~~~~D~y~vl~DF~sY~ 798 (850)
. +|+++|-.. |-+.|.+
T Consensus 613 g--~nGlLVdP~-------------------------------------D~eaLA~------------------------ 629 (1050)
T TIGR02468 613 L--DNGLLVDPH-------------------------------------DQQAIAD------------------------ 629 (1050)
T ss_pred C--CcEEEECCC-------------------------------------CHHHHHH------------------------
Confidence 4 788887431 1222222
Q ss_pred HHHHHHHHHhcCHhHHHHHHHHHhhcCCCCChhHHHHHHHHHHhccc
Q 003072 799 ECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEYARDIWNII 845 (850)
Q Consensus 799 ~aq~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eYa~~iw~i~ 845 (850)
.+.+.+.|++.|.+|........-.||-++++++|.+.+=.+.
T Consensus 630 ----AL~~LL~Dpelr~~m~~~gr~~v~~FSWe~ia~~yl~~i~~~~ 672 (1050)
T TIGR02468 630 ----ALLKLVADKQLWAECRQNGLKNIHLFSWPEHCKTYLSRIASCR 672 (1050)
T ss_pred ----HHHHHhhCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHh
Confidence 2233445777777777665554446999999999987765543
No 41
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=96.28 E-value=0.062 Score=59.28 Aligned_cols=136 Identities=16% Similarity=0.143 Sum_probs=90.8
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCC-CcHHHHHHHHHHHHHhhhhc
Q 003072 569 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFA-TYVQAKRIVKFITDVGATVN 647 (850)
Q Consensus 569 ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P-~y~~aK~iIk~I~~va~~vn 647 (850)
++++....+++-|+..+|.... ++..+.++ ++ . .....+++.|.... .........+.+.++++..
T Consensus 189 ~~~~~~~il~~Grl~~~Kg~~~-Li~A~~~l---~~-~-------~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l- 255 (380)
T PRK15484 189 ISPDETVLLYAGRISPDKGILL-LMQAFEKL---AT-A-------HSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRI- 255 (380)
T ss_pred CCCCCeEEEEeccCccccCHHH-HHHHHHHH---HH-h-------CCCeEEEEEeCCccccccchhHHHHHHHHHHHhc-
Confidence 4556677889999999999887 66655543 22 0 11356777775432 2112223444444444322
Q ss_pred CCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeee
Q 003072 648 HDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 727 (850)
Q Consensus 648 ~Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~f 727 (850)
+. +|.|+..-.-+-...++++||+-...|+. .|.-|..-+-+|.-|++.|+|--|...|+.+.. .|+|++
T Consensus 256 -----~~--~v~~~G~~~~~~l~~~~~~aDv~v~pS~~-~E~f~~~~lEAma~G~PVI~s~~gg~~Eiv~~~--~~G~~l 325 (380)
T PRK15484 256 -----GD--RCIMLGGQPPEKMHNYYPLADLVVVPSQV-EEAFCMVAVEAMAAGKPVLASTKGGITEFVLEG--ITGYHL 325 (380)
T ss_pred -----CC--cEEEeCCCCHHHHHHHHHhCCEEEeCCCC-ccccccHHHHHHHcCCCEEEeCCCCcHhhcccC--CceEEE
Confidence 12 68888765555566788999999875542 388888889999999999999989998877653 678754
No 42
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.17 E-value=0.052 Score=64.33 Aligned_cols=128 Identities=17% Similarity=0.143 Sum_probs=90.2
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003072 570 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 649 (850)
Q Consensus 570 dpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 649 (850)
.++..+.+++=||+..|.+.. ++..+.++. ++ .....+++.|.. | .-.++-+++.+.+
T Consensus 395 ~~~~~vIg~VgRl~~~Kg~~~-LI~A~a~ll--k~---------~pdirLvIVGdG-~---~~eeLk~la~elg------ 452 (578)
T PRK15490 395 QDADTTIGGVFRFVGDKNPFA-WIDFAARYL--QH---------HPATRFVLVGDG-D---LRAEAQKRAEQLG------ 452 (578)
T ss_pred CCCCcEEEEEEEEehhcCHHH-HHHHHHHHH--hH---------CCCeEEEEEeCc-h---hHHHHHHHHHHcC------
Confidence 455667889999999999987 555544332 11 124678888853 2 1223334443332
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeecc
Q 003072 650 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 729 (850)
Q Consensus 650 p~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG~ 729 (850)
+.+ +|.|+.. .-.+ ..++.++||....|. .|+.|.+-+-+|.-|++.|+|--|...|+.++. +|+|++..
T Consensus 453 --L~d--~V~FlG~-~~Dv-~~~LaaADVfVlPS~--~EGfp~vlLEAMA~GlPVVATdvGG~~EiV~dG--~nG~LVp~ 522 (578)
T PRK15490 453 --ILE--RILFVGA-SRDV-GYWLQKMNVFILFSR--YEGLPNVLIEAQMVGVPVISTPAGGSAECFIEG--VSGFILDD 522 (578)
T ss_pred --CCC--cEEECCC-hhhH-HHHHHhCCEEEEccc--ccCccHHHHHHHHhCCCEEEeCCCCcHHHcccC--CcEEEECC
Confidence 334 6888864 3234 457899999998775 699999999999999999999999999877643 89999864
No 43
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=96.15 E-value=0.065 Score=57.59 Aligned_cols=131 Identities=15% Similarity=0.072 Sum_probs=86.7
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003072 570 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 649 (850)
Q Consensus 570 dpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 649 (850)
.++.+..+++-|+.+.|.+.. ++..+..+.+- .+.. ....++++.|.. |. -+.+.+++.+.+
T Consensus 191 ~~~~~~i~~vGrl~~~Kg~~~-li~a~~~l~~~---~~~~----~~~~~l~i~G~g-~~---~~~~~~~~~~~~------ 252 (374)
T TIGR03088 191 ADESVVVGTVGRLQAVKDQPT-LVRAFALLVRQ---LPEG----AERLRLVIVGDG-PA---RGACEQMVRAAG------ 252 (374)
T ss_pred CCCCeEEEEEecCCcccCHHH-HHHHHHHHHHh---Cccc----ccceEEEEecCC-ch---HHHHHHHHHHcC------
Confidence 456788999999999999987 77665554221 1110 114688888852 21 134444444332
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeec
Q 003072 650 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 728 (850)
Q Consensus 650 p~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG 728 (850)
+.+ .|.|+ .+ ..-...++++||+-...|. .|+.|.+-+-||..|.+.|+|--|-..|+.++. .++++|.
T Consensus 253 --~~~--~v~~~-g~-~~~~~~~~~~adi~v~pS~--~Eg~~~~~lEAma~G~Pvv~s~~~g~~e~i~~~--~~g~~~~ 321 (374)
T TIGR03088 253 --LAH--LVWLP-GE-RDDVPALMQALDLFVLPSL--AEGISNTILEAMASGLPVIATAVGGNPELVQHG--VTGALVP 321 (374)
T ss_pred --Ccc--eEEEc-CC-cCCHHHHHHhcCEEEeccc--cccCchHHHHHHHcCCCEEEcCCCCcHHHhcCC--CceEEeC
Confidence 233 34444 33 2333566799999887665 699999999999999999999888888776543 5677664
No 44
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=95.92 E-value=0.075 Score=56.15 Aligned_cols=128 Identities=16% Similarity=0.157 Sum_probs=86.6
Q ss_pred cccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCC
Q 003072 573 AMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEI 652 (850)
Q Consensus 573 ~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~i 652 (850)
....+++=|+..+|.... ++..+.. +++ . .....++++|.- | .-..+-+++.+.+ +
T Consensus 188 ~~~i~~~G~~~~~K~~~~-li~a~~~---l~~-~-------~~~~~l~ivG~g-~---~~~~~~~~~~~~~--------~ 243 (367)
T cd05844 188 PPRILFVGRFVEKKGPLL-LLEAFAR---LAR-R-------VPEVRLVIIGDG-P---LLAALEALARALG--------L 243 (367)
T ss_pred CcEEEEEEeeccccChHH-HHHHHHH---HHH-h-------CCCeEEEEEeCc-h---HHHHHHHHHHHcC--------C
Confidence 346778889999998877 6655444 332 0 124678888852 1 1123333333221 2
Q ss_pred CCcceEEEecCCChhhhhhhccccccccccCCCc----cccCCCccchhhcccceEeeecccccccccccccccceeeec
Q 003072 653 GDLLKVIFVPDYNVSVAELLIPASELSQHISTAG----MEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 728 (850)
Q Consensus 653 ~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag----~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG 728 (850)
.+ +|.|+...+-.-...++.+||+-...|..+ .|+.|++-+-+|.=|++.|+|-.|.+.|+.++. .++++|.
T Consensus 244 ~~--~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e~i~~~--~~g~~~~ 319 (367)
T cd05844 244 GG--RVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPEAVEDG--ETGLLVP 319 (367)
T ss_pred CC--eEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchhheecC--CeeEEEC
Confidence 23 688988876666667889999977655432 689999999999999999999888888766443 6777774
No 45
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=95.87 E-value=0.023 Score=60.84 Aligned_cols=123 Identities=20% Similarity=0.106 Sum_probs=79.3
Q ss_pred ccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCC
Q 003072 574 MFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIG 653 (850)
Q Consensus 574 lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~i~ 653 (850)
...+++-|+...|+... ++..+.++.+- . ....+++.|....... +-+++. +..+.
T Consensus 205 ~~i~~vgrl~~~K~~~~-li~a~~~l~~~---~--------~~~~l~i~G~g~~~~~----~~~~~~--------~~~~~ 260 (372)
T cd04949 205 HKIITVARLAPEKQLDQ-LIKAFAKVVKQ---V--------PDATLDIYGYGDEEEK----LKELIE--------ELGLE 260 (372)
T ss_pred CeEEEEEccCcccCHHH-HHHHHHHHHHh---C--------CCcEEEEEEeCchHHH----HHHHHH--------HcCCc
Confidence 35678889999998877 76666554321 1 1356777886544322 222221 12233
Q ss_pred CcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccc-ccccccccccccceeeec
Q 003072 654 DLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG-ANVEIRQEVGEENFFLFG 728 (850)
Q Consensus 654 ~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG-~nvEi~e~~g~eN~f~fG 728 (850)
+ .|.|.. |. +-...++..||+....|. .|+-|.+-+-||..|++.|++--| ...|+.+. ++|++++.
T Consensus 261 ~--~v~~~g-~~-~~~~~~~~~ad~~v~~S~--~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v~~--~~~G~lv~ 328 (372)
T cd04949 261 D--YVFLKG-YT-RDLDEVYQKAQLSLLTSQ--SEGFGLSLMEALSHGLPVISYDVNYGPSEIIED--GENGYLVP 328 (372)
T ss_pred c--eEEEcC-CC-CCHHHHHhhhhEEEeccc--ccccChHHHHHHhCCCCEEEecCCCCcHHHccc--CCCceEeC
Confidence 3 466654 53 345567788999999987 599999999999999999998544 34454432 36776664
No 46
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.80 E-value=0.022 Score=59.33 Aligned_cols=128 Identities=16% Similarity=0.083 Sum_probs=92.5
Q ss_pred CCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCc
Q 003072 571 PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 650 (850)
Q Consensus 571 pd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp 650 (850)
.+....+++-|+.++|+... ++..+.++. ...+++.|..- ....+.+++...
T Consensus 189 ~~~~~i~~~G~~~~~K~~~~-li~a~~~l~---------------~~~l~i~G~g~----~~~~~~~~~~~~-------- 240 (357)
T cd03795 189 AGRPFFLFVGRLVYYKGLDV-LLEAAAALP---------------DAPLVIVGEGP----LEAELEALAAAL-------- 240 (357)
T ss_pred CCCcEEEEecccccccCHHH-HHHHHHhcc---------------CcEEEEEeCCh----hHHHHHHHHHhc--------
Confidence 45668889999999998877 665544321 35788888642 222333333222
Q ss_pred CCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeecc
Q 003072 651 EIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 729 (850)
Q Consensus 651 ~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG~ 729 (850)
.... +|.|++..+=+-...++..||+-...|+...|..|.+-+-+|..|.+.|+|-.|..-|..+. .++|++++..
T Consensus 241 ~~~~--~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~-~~~~g~~~~~ 316 (357)
T cd03795 241 GLLD--RVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL-HGVTGLVVPP 316 (357)
T ss_pred CCcc--eEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh-CCCceEEeCC
Confidence 2223 79999988765566788999999988877789999999999999999999988887776554 3578888754
No 47
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=95.71 E-value=0.039 Score=57.71 Aligned_cols=134 Identities=19% Similarity=0.186 Sum_probs=96.1
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003072 569 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 648 (850)
Q Consensus 569 ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 648 (850)
.+++....+++-|+...|.+.. ++..+.. +++ . ..+.++++.|...+....-+.+.+++.+.+
T Consensus 181 ~~~~~~~i~~~Gr~~~~Kg~~~-li~~~~~---l~~-~-------~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~----- 243 (355)
T cd03819 181 LPKGKPVILLPGRLTRWKGQEV-FIEALAR---LKK-D-------DPDVHLLIVGDAQGRRFYYAELLELIKRLG----- 243 (355)
T ss_pred CCCCceEEEEeeccccccCHHH-HHHHHHH---HHh-c-------CCCeEEEEEECCcccchHHHHHHHHHHHcC-----
Confidence 4567778899999999999888 6655544 332 1 126789999987766655566666554432
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeec
Q 003072 649 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 728 (850)
Q Consensus 649 Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG 728 (850)
+.+ +|.|+.. .+--..++.+||+-...|. ..|..|++-+-||.-|++.|+|-.|...|+.++. .+++++-
T Consensus 244 ---~~~--~v~~~g~--~~~~~~~l~~ad~~i~ps~-~~e~~~~~l~EA~a~G~PvI~~~~~~~~e~i~~~--~~g~~~~ 313 (355)
T cd03819 244 ---LQD--RVTFVGH--CSDMPAAYALADIVVSAST-EPEAFGRTAVEAQAMGRPVIASDHGGARETVRPG--ETGLLVP 313 (355)
T ss_pred ---Ccc--eEEEcCC--cccHHHHHHhCCEEEecCC-CCCCCchHHHHHHhcCCCEEEcCCCCcHHHHhCC--CceEEeC
Confidence 222 5777766 3333466788999887663 3689999999999999999999888888877553 4788875
Q ss_pred c
Q 003072 729 A 729 (850)
Q Consensus 729 ~ 729 (850)
.
T Consensus 314 ~ 314 (355)
T cd03819 314 P 314 (355)
T ss_pred C
Confidence 3
No 48
>PLN02949 transferase, transferring glycosyl groups
Probab=95.58 E-value=0.15 Score=58.76 Aligned_cols=136 Identities=15% Similarity=0.120 Sum_probs=88.1
Q ss_pred cccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEecc-CCCCcHH-HHHHHHHHHHHhhhhcCCc
Q 003072 573 AMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGK-AFATYVQ-AKRIVKFITDVGATVNHDP 650 (850)
Q Consensus 573 ~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGK-A~P~y~~-aK~iIk~I~~va~~vn~Dp 650 (850)
..+.+++=||...|+..+ ++..+.++.+-. . .. ..+..++++|. ..+.|.. -+++-+++.+.
T Consensus 268 ~~~il~vGR~~~~Kg~~l-lI~A~~~l~~~~--~-~~----~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l-------- 331 (463)
T PLN02949 268 PPYIISVAQFRPEKAHAL-QLEAFALALEKL--D-AD----VPRPKLQFVGSCRNKEDEERLQKLKDRAKEL-------- 331 (463)
T ss_pred CCEEEEEEeeeccCCHHH-HHHHHHHHHHhc--c-cc----CCCcEEEEEeCCCCcccHHHHHHHHHHHHHc--------
Confidence 345667779999999999 888877764421 1 01 11234555554 3444432 23444444332
Q ss_pred CCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccc-ccccccc-cccccceeeec
Q 003072 651 EIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG-ANVEIRQ-EVGEENFFLFG 728 (850)
Q Consensus 651 ~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG-~nvEi~e-~~g~eN~f~fG 728 (850)
.+.+ +|.|+.+-.-+--..++..||+-.+.|. .|.=|.+-+-+|.-|++.|++--| -..||.. +.+++++|++.
T Consensus 332 ~L~~--~V~f~g~v~~~el~~ll~~a~~~v~~s~--~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~ 407 (463)
T PLN02949 332 GLDG--DVEFHKNVSYRDLVRLLGGAVAGLHSMI--DEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLAT 407 (463)
T ss_pred CCCC--cEEEeCCCCHHHHHHHHHhCcEEEeCCc--cCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccCC
Confidence 2344 7999988665656667889999997664 699999999999999999998654 3446643 33445666653
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=95.52 E-value=0.1 Score=53.41 Aligned_cols=129 Identities=12% Similarity=0.135 Sum_probs=85.5
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003072 570 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 649 (850)
Q Consensus 570 dpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 649 (850)
+++.+..+++-|+..+|...+ ++..+.+ +.+ . .+.++++.|...... .+.+++...
T Consensus 217 ~~~~~~i~~~G~~~~~k~~~~-l~~~~~~---l~~-~--------~~~~l~i~G~~~~~~----~~~~~~~~~------- 272 (394)
T cd03794 217 LDDKFVVLYAGNIGRAQGLDT-LLEAAAL---LKD-R--------PDIRFLIVGDGPEKE----ELKELAKAL------- 272 (394)
T ss_pred CCCcEEEEEecCcccccCHHH-HHHHHHH---Hhh-c--------CCeEEEEeCCcccHH----HHHHHHHHc-------
Confidence 456788899999999998777 6655443 432 1 156788888644322 222222111
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCcc---ccCCCccchhhcccceEeeecccccccccccccccceee
Q 003072 650 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGM---EASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFL 726 (850)
Q Consensus 650 p~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~---EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~ 726 (850)
... .|.|++..+-+-...++..||+-...+.... .+++++-+-++.-|++.|+|-.|..-|+.... .++++
T Consensus 273 -~~~---~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~~~~--~~g~~ 346 (394)
T cd03794 273 -GLD---NVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELVEEA--GAGLV 346 (394)
T ss_pred -CCC---cEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhhccC--CcceE
Confidence 111 5999986665666678899999988776553 33344457899999999999988888766443 56666
Q ss_pred ec
Q 003072 727 FG 728 (850)
Q Consensus 727 fG 728 (850)
+.
T Consensus 347 ~~ 348 (394)
T cd03794 347 VP 348 (394)
T ss_pred eC
Confidence 64
No 50
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=95.51 E-value=0.067 Score=54.88 Aligned_cols=132 Identities=17% Similarity=0.171 Sum_probs=93.4
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003072 569 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 648 (850)
Q Consensus 569 ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 648 (850)
++++....+++-|+..+|+... ++..+.+ +++ . ....++++.|... ..+.+.+++....
T Consensus 198 ~~~~~~~i~~~G~~~~~k~~~~-l~~~~~~---~~~-~-------~~~~~l~i~G~~~----~~~~~~~~~~~~~----- 256 (374)
T cd03817 198 IPEDEPVLLYVGRLAKEKNIDF-LIRAFAR---LLK-E-------EPDVKLVIVGDGP----EREELEELARELG----- 256 (374)
T ss_pred CCCCCeEEEEEeeeecccCHHH-HHHHHHH---HHH-h-------CCCeEEEEEeCCc----hHHHHHHHHHHcC-----
Confidence 4566778899999999998766 5555443 332 1 1256888888642 2233444443222
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeec
Q 003072 649 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 728 (850)
Q Consensus 649 Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG 728 (850)
..+ +|.|++..+-+-...++..||+-...|. .|..|++-+-+|.-|++.|+|-.|+.-|+.+.. ++++++.
T Consensus 257 ---~~~--~v~~~g~~~~~~~~~~~~~ad~~l~~s~--~e~~~~~~~Ea~~~g~PvI~~~~~~~~~~i~~~--~~g~~~~ 327 (374)
T cd03817 257 ---LAD--RVIFTGFVPREELPDYYKAADLFVFAST--TETQGLVLLEAMAAGLPVVAVDAPGLPDLVADG--ENGFLFP 327 (374)
T ss_pred ---CCC--cEEEeccCChHHHHHHHHHcCEEEeccc--ccCcChHHHHHHHcCCcEEEeCCCChhhheecC--ceeEEeC
Confidence 222 6899988776667778889999887664 578899999999999999999999988877654 7888886
Q ss_pred cc
Q 003072 729 AR 730 (850)
Q Consensus 729 ~~ 730 (850)
..
T Consensus 328 ~~ 329 (374)
T cd03817 328 PG 329 (374)
T ss_pred CC
Confidence 54
No 51
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=95.44 E-value=0.026 Score=56.79 Aligned_cols=130 Identities=17% Similarity=0.102 Sum_probs=89.4
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003072 569 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 648 (850)
Q Consensus 569 ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 648 (850)
.+++....+++-|+.+.|+..+ ++..+.+ +++ . ..+.++++.|.....+. +.+++....
T Consensus 185 ~~~~~~~i~~~g~~~~~k~~~~-~i~~~~~---l~~-~-------~~~~~l~i~G~~~~~~~----~~~~~~~~~----- 243 (353)
T cd03811 185 IPPDGPVILAVGRLSPQKGFDT-LIRAFAL---LRK-E-------GPDARLVILGDGPLREE----LEALAKELG----- 243 (353)
T ss_pred CCCCceEEEEEecchhhcChHH-HHHHHHH---hhh-c-------CCCceEEEEcCCccHHH----HHHHHHhcC-----
Confidence 4566788899999999998776 5554443 332 1 12568888886543322 223333222
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeec
Q 003072 649 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 728 (850)
Q Consensus 649 Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG 728 (850)
..+ +|.|+.. ++-...++..||+....|+. |..|++-+-+|.-|++.|+|-.|..-|+.+.. .+++++.
T Consensus 244 ---~~~--~v~~~g~--~~~~~~~~~~~d~~i~ps~~--e~~~~~~~Ea~~~G~PvI~~~~~~~~e~i~~~--~~g~~~~ 312 (353)
T cd03811 244 ---LAD--RVHFLGF--QSNPYPYLKAADLFVLSSRY--EGFPNVLLEAMALGTPVVATDCPGPREILEDG--ENGLLVP 312 (353)
T ss_pred ---CCc--cEEEecc--cCCHHHHHHhCCEEEeCccc--CCCCcHHHHHHHhCCCEEEcCCCChHHHhcCC--CceEEEC
Confidence 222 5666665 33345688999999887654 99999999999999999999889888876543 7888886
Q ss_pred cc
Q 003072 729 AR 730 (850)
Q Consensus 729 ~~ 730 (850)
..
T Consensus 313 ~~ 314 (353)
T cd03811 313 VG 314 (353)
T ss_pred CC
Confidence 54
No 52
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=95.34 E-value=0.037 Score=57.59 Aligned_cols=131 Identities=18% Similarity=0.091 Sum_probs=91.8
Q ss_pred CCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCc
Q 003072 571 PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 650 (850)
Q Consensus 571 pd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp 650 (850)
++....+++-|+..+|...+ ++..+.++.+- ..+.++++.|...+.. .+-+++....
T Consensus 177 ~~~~~i~~~g~~~~~k~~~~-l~~~~~~l~~~-----------~~~~~l~i~G~~~~~~----~~~~~~~~~~------- 233 (355)
T cd03799 177 GEPLRILSVGRLVEKKGLDY-LLEALALLKDR-----------GIDFRLDIVGDGPLRD----ELEALIAELG------- 233 (355)
T ss_pred CCCeEEEEEeeeccccCHHH-HHHHHHHHhhc-----------CCCeEEEEEECCccHH----HHHHHHHHcC-------
Confidence 45567788899999998777 77766554221 1256788888654432 2333333221
Q ss_pred CCCCcceEEEecCCChhhhhhhccccccccccCCC----ccccCCCccchhhcccceEeeecccccccccccccccceee
Q 003072 651 EIGDLLKVIFVPDYNVSVAELLIPASELSQHISTA----GMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFL 726 (850)
Q Consensus 651 ~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~a----g~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~ 726 (850)
..+ .|.|.....-.-...++..||+-...|+. ..|+.|++-+-+|.-|++.|++-.|+.-|+.+.. .|+++
T Consensus 234 -~~~--~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~i~~~--~~g~~ 308 (355)
T cd03799 234 -LED--RVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPELVEDG--ETGLL 308 (355)
T ss_pred -CCC--eEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcchhhhCC--CceEE
Confidence 222 58888877666677788999999887665 2488899999999999999999888888777543 57888
Q ss_pred ecc
Q 003072 727 FGA 729 (850)
Q Consensus 727 fG~ 729 (850)
+..
T Consensus 309 ~~~ 311 (355)
T cd03799 309 VPP 311 (355)
T ss_pred eCC
Confidence 854
No 53
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=95.06 E-value=0.04 Score=58.63 Aligned_cols=114 Identities=17% Similarity=0.169 Sum_probs=83.6
Q ss_pred cccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCC
Q 003072 575 FDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGD 654 (850)
Q Consensus 575 fd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~i~~ 654 (850)
+.+++-|+..+|++.. ++..+.++ |..+++.|.-.. .+. ++. . ..+
T Consensus 197 ~il~~G~~~~~K~~~~-li~a~~~~----------------~~~l~ivG~g~~----~~~-l~~--~----------~~~ 242 (351)
T cd03804 197 YYLSVGRLVPYKRIDL-AIEAFNKL----------------GKRLVVIGDGPE----LDR-LRA--K----------AGP 242 (351)
T ss_pred EEEEEEcCccccChHH-HHHHHHHC----------------CCcEEEEECChh----HHH-HHh--h----------cCC
Confidence 4678999999999887 66543221 346777775321 122 221 1 112
Q ss_pred cceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeecc
Q 003072 655 LLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 729 (850)
Q Consensus 655 ~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG~ 729 (850)
+|.|+..-+-+-...++.+||+....|+ |..|++-+-+|..|++.|+|-.|...|+.++. ++++++..
T Consensus 243 --~V~~~g~~~~~~~~~~~~~ad~~v~ps~---e~~g~~~~Eama~G~Pvi~~~~~~~~e~i~~~--~~G~~~~~ 310 (351)
T cd03804 243 --NVTFLGRVSDEELRDLYARARAFLFPAE---EDFGIVPVEAMASGTPVIAYGKGGALETVIDG--VTGILFEE 310 (351)
T ss_pred --CEEEecCCCHHHHHHHHHhCCEEEECCc---CCCCchHHHHHHcCCCEEEeCCCCCcceeeCC--CCEEEeCC
Confidence 6999998766667889999999997765 99999999999999999999999988877543 67888753
No 54
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=95.04 E-value=0.24 Score=51.75 Aligned_cols=124 Identities=12% Similarity=-0.022 Sum_probs=83.1
Q ss_pred CCCCcccccccccccc--cccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhh
Q 003072 569 VSPDAMFDIQVKRIHE--YKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATV 646 (850)
Q Consensus 569 ldpd~lfd~~~kR~he--YKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~v 646 (850)
++++.....+..|... +|+... ++..+.. ++. . . ..+.++++.|...+....
T Consensus 187 ~~~~~~~i~~~~~~~~~~~K~~~~-ll~a~~~---l~~-~--~----~~~~~~~i~G~~~~~~~~--------------- 240 (365)
T cd03825 187 LPADKKIILFGAVGGTDPRKGFDE-LIEALKR---LAE-R--W----KDDIELVVFGASDPEIPP--------------- 240 (365)
T ss_pred CCCCCeEEEEEecCCCccccCHHH-HHHHHHH---hhh-c--c----CCCeEEEEeCCCchhhhc---------------
Confidence 4555555566666665 787766 6655443 321 0 0 125688999976543221
Q ss_pred cCCcCCCCcceEEEecCCC-hhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccccccccccccccccee
Q 003072 647 NHDPEIGDLLKVIFVPDYN-VSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFF 725 (850)
Q Consensus 647 n~Dp~i~~~lkVvFlenY~-vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f 725 (850)
...+ +|.|+.... -.....++..||+-...|. .|+.|.+-+-+|..|++.|++-.|...|+.... +++|
T Consensus 241 ----~~~~--~v~~~g~~~~~~~~~~~~~~ad~~l~ps~--~e~~g~~~~Eam~~g~PvI~~~~~~~~e~~~~~--~~g~ 310 (365)
T cd03825 241 ----DLPF--PVHYLGSLNDDESLALIYSAADVFVVPSL--QENFPNTAIEALACGTPVVAFDVGGIPDIVDHG--VTGY 310 (365)
T ss_pred ----cCCC--ceEecCCcCCHHHHHHHHHhCCEEEeccc--cccccHHHHHHHhcCCCEEEecCCCChhheeCC--CceE
Confidence 1122 577877765 4455567889999988665 699999999999999999999888888766432 4666
Q ss_pred eec
Q 003072 726 LFG 728 (850)
Q Consensus 726 ~fG 728 (850)
++.
T Consensus 311 ~~~ 313 (365)
T cd03825 311 LAK 313 (365)
T ss_pred EeC
Confidence 654
No 55
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=94.85 E-value=0.29 Score=56.97 Aligned_cols=122 Identities=20% Similarity=0.136 Sum_probs=83.9
Q ss_pred ccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCC
Q 003072 574 MFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIG 653 (850)
Q Consensus 574 lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~i~ 653 (850)
...+++-|+.+.|+... ++..+.++.+- ....++++.|.. .. -..+-+++... .+.
T Consensus 320 ~~il~vGrl~~~Kg~~~-li~A~~~l~~~-----------~p~~~l~i~G~G---~~-~~~l~~~i~~~--------~l~ 375 (500)
T TIGR02918 320 FSIITASRLAKEKHIDW-LVKAVVKAKKS-----------VPELTFDIYGEG---GE-KQKLQKIINEN--------QAQ 375 (500)
T ss_pred eEEEEEeccccccCHHH-HHHHHHHHHhh-----------CCCeEEEEEECc---hh-HHHHHHHHHHc--------CCC
Confidence 46788899999999887 76665554321 124566666642 11 12333333322 123
Q ss_pred CcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccc-ccccccccccccceeeec
Q 003072 654 DLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG-ANVEIRQEVGEENFFLFG 728 (850)
Q Consensus 654 ~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG-~nvEi~e~~g~eN~f~fG 728 (850)
+ +|.|+. + +.+++ +.+.||+....|+ .|+-|.+-|-||..|++.|+|--| ...|+.+.. +||+++.
T Consensus 376 ~--~V~f~G-~-~~~~~-~~~~adv~v~pS~--~Egfgl~~lEAma~G~PVI~~dv~~G~~eiI~~g--~nG~lv~ 442 (500)
T TIGR02918 376 D--YIHLKG-H-RNLSE-VYKDYELYLSAST--SEGFGLTLMEAVGSGLGMIGFDVNYGNPTFIEDN--KNGYLIP 442 (500)
T ss_pred C--eEEEcC-C-CCHHH-HHHhCCEEEEcCc--cccccHHHHHHHHhCCCEEEecCCCCCHHHccCC--CCEEEEe
Confidence 4 677877 4 46654 5789999998886 799999999999999999999644 677877654 8999985
No 56
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.77 E-value=0.28 Score=50.62 Aligned_cols=122 Identities=16% Similarity=0.133 Sum_probs=83.2
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003072 570 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 649 (850)
Q Consensus 570 dpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 649 (850)
+++....+++-|+..+|.... ++..+. ++++ . .+..+++.|.. |.. .-++ .
T Consensus 194 ~~~~~~i~~~G~~~~~k~~~~-~i~~~~---~l~~-~--------~~~~l~i~G~~-~~~----~~~~------~----- 244 (364)
T cd03814 194 PPDRPVLLYVGRLAPEKNLEA-LLDADL---PLRR-R--------PPVRLVIVGDG-PAR----ARLE------A----- 244 (364)
T ss_pred CCCCeEEEEEeccccccCHHH-HHHHHH---Hhhh-c--------CCceEEEEeCC-chH----HHHh------c-----
Confidence 345567788999999888766 554443 3432 1 14678888852 211 1122 1
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeec
Q 003072 650 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 728 (850)
Q Consensus 650 p~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG 728 (850)
..+ +|.|+.-....-...++..||+-...+. .|..|.+-+-+|.-|++.|++--|...|+.++. .+++++.
T Consensus 245 --~~~--~v~~~g~~~~~~~~~~~~~~d~~l~~s~--~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i~~~--~~g~~~~ 315 (364)
T cd03814 245 --RYP--NVHFLGFLDGEELAAAYASADVFVFPSR--TETFGLVVLEAMASGLPVVAPDAGGPADIVTDG--ENGLLVE 315 (364)
T ss_pred --cCC--cEEEEeccCHHHHHHHHHhCCEEEECcc--cccCCcHHHHHHHcCCCEEEcCCCCchhhhcCC--cceEEcC
Confidence 112 6888887667777788999999887654 588888899999999999999888877766542 5666664
No 57
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=94.19 E-value=0.21 Score=56.63 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=82.8
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003072 570 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 649 (850)
Q Consensus 570 dpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 649 (850)
.|+..+.+++-|+..+|...+ ++..+.+ + ....++++|. .|.. ..+-+++ + .
T Consensus 260 ~~~~~~i~~vGrl~~~K~~~~-li~a~~~---~------------~~~~l~ivG~-G~~~---~~l~~~~----~---~- 311 (465)
T PLN02871 260 EPEKPLIVYVGRLGAEKNLDF-LKRVMER---L------------PGARLAFVGD-GPYR---EELEKMF----A---G- 311 (465)
T ss_pred CCCCeEEEEeCCCchhhhHHH-HHHHHHh---C------------CCcEEEEEeC-ChHH---HHHHHHh----c---c-
Confidence 456778899999999998666 4332211 1 1357888885 2221 1222222 1 1
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccccccccccc-ccccceeeec
Q 003072 650 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQE-VGEENFFLFG 728 (850)
Q Consensus 650 p~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~-~g~eN~f~fG 728 (850)
.+|.|+.--.=+-...++.+||+-..-|. .|..|.+-+-+|.-|.+.|+|-.|...|+.+. ..++|+++|.
T Consensus 312 ------~~V~f~G~v~~~ev~~~~~~aDv~V~pS~--~E~~g~~vlEAmA~G~PVI~s~~gg~~eiv~~~~~~~~G~lv~ 383 (465)
T PLN02871 312 ------TPTVFTGMLQGDELSQAYASGDVFVMPSE--SETLGFVVLEAMASGVPVVAARAGGIPDIIPPDQEGKTGFLYT 383 (465)
T ss_pred ------CCeEEeccCCHHHHHHHHHHCCEEEECCc--ccccCcHHHHHHHcCCCEEEcCCCCcHhhhhcCCCCCceEEeC
Confidence 15777653222445567899999987664 68889999999999999999988888887754 1248899986
Q ss_pred c
Q 003072 729 A 729 (850)
Q Consensus 729 ~ 729 (850)
.
T Consensus 384 ~ 384 (465)
T PLN02871 384 P 384 (465)
T ss_pred C
Confidence 4
No 58
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=94.12 E-value=0.49 Score=47.79 Aligned_cols=125 Identities=14% Similarity=0.034 Sum_probs=78.5
Q ss_pred CcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcC
Q 003072 572 DAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPE 651 (850)
Q Consensus 572 d~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~ 651 (850)
+....+++=|+...|.... ++..+..+.+ . ....++++.|....... +-+++... .
T Consensus 177 ~~~~i~~~g~~~~~K~~~~-l~~~~~~l~~--~---------~~~~~l~i~G~~~~~~~----~~~~~~~~--------~ 232 (348)
T cd03820 177 KSKRILAVGRLVPQKGFDL-LIEAWAKIAK--K---------HPDWKLRIVGDGPEREA----LEALIKEL--------G 232 (348)
T ss_pred CCcEEEEEEeeccccCHHH-HHHHHHHHHh--c---------CCCeEEEEEeCCCCHHH----HHHHHHHc--------C
Confidence 4456778889999998877 6655544322 1 12457888886543322 22222222 1
Q ss_pred CCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccc-cccccccccceeeec
Q 003072 652 IGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANV-EIRQEVGEENFFLFG 728 (850)
Q Consensus 652 i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nv-Ei~e~~g~eN~f~fG 728 (850)
+.+ +|.|... .+-...++..||+-...|+. |..|++-+-+|..|++.|++-.|... |+.+. .+++++|-
T Consensus 233 ~~~--~v~~~g~--~~~~~~~~~~ad~~i~ps~~--e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~~~~~--~~~g~~~~ 302 (348)
T cd03820 233 LED--RVILLGF--TKNIEEYYAKASIFVLTSRF--EGFPMVLLEAMAFGLPVISFDCPTGPSEIIED--GVNGLLVP 302 (348)
T ss_pred CCC--eEEEcCC--cchHHHHHHhCCEEEeCccc--cccCHHHHHHHHcCCCEEEecCCCchHhhhcc--CcceEEeC
Confidence 222 5666665 45566778889998876654 89999999999999999998544433 33322 24777764
No 59
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=94.04 E-value=0.2 Score=52.50 Aligned_cols=120 Identities=18% Similarity=0.075 Sum_probs=83.7
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003072 569 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 648 (850)
Q Consensus 569 ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 648 (850)
..++....+++-|+..+|...+ ++..+.++.+- ....++++.|.... . +.+-+.+.+.
T Consensus 188 ~~~~~~~i~~vGr~~~~Kg~~~-li~a~~~l~~~-----------~~~~~l~ivG~g~~-~---~~~~~~~~~~------ 245 (358)
T cd03812 188 ILEDKFVIGHVGRFSEQKNHEF-LIEIFAELLKK-----------NPNAKLLLVGDGEL-E---EEIKKKVKEL------ 245 (358)
T ss_pred CCCCCEEEEEEeccccccChHH-HHHHHHHHHHh-----------CCCeEEEEEeCCch-H---HHHHHHHHhc------
Confidence 4667888999999999999888 66655554221 12468888886432 1 2222222211
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccccccccccc
Q 003072 649 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQE 718 (850)
Q Consensus 649 Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~ 718 (850)
.+.+ +|.|+.- .+-...++..||+-.+.|+ .|..|.+-+-||.-|++.|+|--|..-|+.+.
T Consensus 246 --~~~~--~v~~~g~--~~~~~~~~~~adi~v~ps~--~E~~~~~~lEAma~G~PvI~s~~~~~~~~i~~ 307 (358)
T cd03812 246 --GLED--KVIFLGV--RNDVPELLQAMDVFLFPSL--YEGLPLVLIEAQASGLPCILSDTITKEVDLTD 307 (358)
T ss_pred --CCCC--cEEEecc--cCCHHHHHHhcCEEEeccc--ccCCCHHHHHHHHhCCCEEEEcCCchhhhhcc
Confidence 2233 6777764 4444567899999998886 49999999999999999999988888776644
No 60
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=93.95 E-value=0.36 Score=54.36 Aligned_cols=138 Identities=14% Similarity=0.107 Sum_probs=90.8
Q ss_pred CcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCc-H-HHHHHHHHHHHHhhhhcCC
Q 003072 572 DAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY-V-QAKRIVKFITDVGATVNHD 649 (850)
Q Consensus 572 d~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y-~-~aK~iIk~I~~va~~vn~D 649 (850)
+..+.+++=||...|+..+ ++..+..+.+-. +... ..+.+++++|.....+ . .-+.+-+++.+.
T Consensus 236 ~~~~il~vgr~~~~K~~~~-li~A~~~l~~~~---~~~~---~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l------- 301 (419)
T cd03806 236 RENQILSIAQFRPEKNHPL-QLRAFAKLLKRL---PEEI---KEKIKLVLIGSCRNEDDEKRVEDLKLLAKEL------- 301 (419)
T ss_pred CCcEEEEEEeecCCCCHHH-HHHHHHHHHHhC---cccc---cCceEEEEEcCCCCcccHHHHHHHHHHHHHh-------
Confidence 3457888889999999998 777766654321 1100 0135677777643332 2 223333333322
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccc-ccccccccc-cccceeee
Q 003072 650 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG-ANVEIRQEV-GEENFFLF 727 (850)
Q Consensus 650 p~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG-~nvEi~e~~-g~eN~f~f 727 (850)
.+.+ +|.|+.+-.-+--..++..||+..+.|.. |.-|-+-.-+|.-|++.|++-.| ..-||.+.. +++++|++
T Consensus 302 -~l~~--~V~f~g~v~~~~l~~~l~~adv~v~~s~~--E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv~~~~~g~~G~l~ 376 (419)
T cd03806 302 -GLED--KVEFVVNAPFEELLEELSTASIGLHTMWN--EHFGIGVVEYMAAGLIPLAHASGGPLLDIVVPWDGGPTGFLA 376 (419)
T ss_pred -CCCC--eEEEecCCCHHHHHHHHHhCeEEEECCcc--CCcccHHHHHHHcCCcEEEEcCCCCchheeeccCCCCceEEe
Confidence 2344 79999876666667888999999987764 88899999999999999988654 445665411 35789987
Q ss_pred c
Q 003072 728 G 728 (850)
Q Consensus 728 G 728 (850)
.
T Consensus 377 ~ 377 (419)
T cd03806 377 S 377 (419)
T ss_pred C
Confidence 4
No 61
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.84 E-value=0.27 Score=59.68 Aligned_cols=128 Identities=18% Similarity=0.228 Sum_probs=90.0
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003072 570 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 649 (850)
Q Consensus 570 dpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 649 (850)
+.+.++++++-|+.+.|.+.+ ++..+.++.+ + . ....+++.|.. | . -..+-+++.+.+
T Consensus 514 ~~~~~vIg~VGRL~~~KG~~~-LI~A~a~l~~--~-~--------p~~~LvIvG~G-~--~-~~~L~~l~~~lg------ 571 (694)
T PRK15179 514 SDARFTVGTVMRVDDNKRPFL-WVEAAQRFAA--S-H--------PKVRFIMVGGG-P--L-LESVREFAQRLG------ 571 (694)
T ss_pred CCCCeEEEEEEeCCccCCHHH-HHHHHHHHHH--H-C--------cCeEEEEEccC-c--c-hHHHHHHHHHcC------
Confidence 445778889999999999998 6666555422 1 1 13578888863 1 1 233444443332
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeecc
Q 003072 650 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 729 (850)
Q Consensus 650 p~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG~ 729 (850)
+.+ +|.|+. |.=.+ ..++.++|+....|+ .|..|.+=+-+|..|++.|+|--|...|+.++. +|+|++..
T Consensus 572 --L~~--~V~flG-~~~dv-~~ll~aaDv~VlpS~--~Egfp~vlLEAMA~G~PVVat~~gG~~EiV~dg--~~GlLv~~ 641 (694)
T PRK15179 572 --MGE--RILFTG-LSRRV-GYWLTQFNAFLLLSR--FEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQEG--VTGLTLPA 641 (694)
T ss_pred --CCC--cEEEcC-CcchH-HHHHHhcCEEEeccc--cccchHHHHHHHHcCCeEEEECCCChHHHccCC--CCEEEeCC
Confidence 334 566655 43344 467899999998885 699999999999999999999888888877653 78999864
No 62
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=93.56 E-value=0.68 Score=48.57 Aligned_cols=120 Identities=14% Similarity=0.116 Sum_probs=76.3
Q ss_pred cccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCC
Q 003072 575 FDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGD 654 (850)
Q Consensus 575 fd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~i~~ 654 (850)
+.+++=|+.++|...+ ++..+.. +.. ...+++.|.........+.+.+. . ...+
T Consensus 195 ~i~~~G~~~~~Kg~~~-li~a~~~---l~~-----------~~~l~ivG~~~~~~~~~~~~~~~---~--------~~~~ 248 (363)
T cd04955 195 YYLLVGRIVPENNIDD-LIEAFSK---SNS-----------GKKLVIVGNADHNTPYGKLLKEK---A--------AADP 248 (363)
T ss_pred EEEEEecccccCCHHH-HHHHHHh---hcc-----------CceEEEEcCCCCcchHHHHHHHH---h--------CCCC
Confidence 4578899999999887 6554432 211 34688888775444433333321 1 1122
Q ss_pred cceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeee
Q 003072 655 LLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 727 (850)
Q Consensus 655 ~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~f 727 (850)
+|.|+.-..=.-...++..||+..-.|. ..|..|.+-+-+|.-|++.|+|-.|...|+.+. ++++|
T Consensus 249 --~V~~~g~~~~~~~~~~~~~ad~~v~ps~-~~e~~~~~~~EAma~G~PvI~s~~~~~~e~~~~----~g~~~ 314 (363)
T cd04955 249 --RIIFVGPIYDQELLELLRYAALFYLHGH-SVGGTNPSLLEAMAYGCPVLASDNPFNREVLGD----KAIYF 314 (363)
T ss_pred --cEEEccccChHHHHHHHHhCCEEEeCCc-cCCCCChHHHHHHHcCCCEEEecCCccceeecC----CeeEe
Confidence 6888875433333455566777654443 348888899999999999999988887776532 55555
No 63
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=93.46 E-value=0.29 Score=49.74 Aligned_cols=129 Identities=16% Similarity=0.093 Sum_probs=88.4
Q ss_pred CCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003072 570 SPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 649 (850)
Q Consensus 570 dpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 649 (850)
+.+....+++-|+..+|.... ++..+.+ +.+ . ..+.++++.|...+. +.+.+++.+
T Consensus 199 ~~~~~~i~~~g~~~~~k~~~~-li~~~~~---~~~-~-------~~~~~l~i~g~~~~~----~~~~~~~~~-------- 254 (377)
T cd03798 199 PEDKKVILFVGRLVPRKGIDY-LIEALAR---LLK-K-------RPDVHLVIVGDGPLR----EALEALAAE-------- 254 (377)
T ss_pred CCCceEEEEeccCccccCHHH-HHHHHHH---HHh-c-------CCCeEEEEEcCCcch----HHHHHHHHh--------
Confidence 456678889999999888766 6655443 332 1 125788999975442 223333321
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeec
Q 003072 650 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 728 (850)
Q Consensus 650 p~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG 728 (850)
....+ .|.|++..+-+-...++..||+....++. |+.|++-+-++.-|++.|++-.|+..|+.+.. .++++|-
T Consensus 255 ~~~~~--~v~~~g~~~~~~~~~~~~~ad~~i~~~~~--~~~~~~~~Ea~~~G~pvI~~~~~~~~~~~~~~--~~g~~~~ 327 (377)
T cd03798 255 LGLED--RVTFLGAVPHEEVPAYYAAADVFVLPSLR--EGFGLVLLEAMACGLPVVATDVGGIPEIITDG--ENGLLVP 327 (377)
T ss_pred cCCcc--eEEEeCCCCHHHHHHHHHhcCeeecchhh--ccCChHHHHHHhcCCCEEEecCCChHHHhcCC--cceeEEC
Confidence 12223 57787766555566778889999887766 99999999999999999999888888766543 4456654
No 64
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=92.94 E-value=0.45 Score=48.83 Aligned_cols=126 Identities=13% Similarity=0.017 Sum_probs=88.2
Q ss_pred CCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCc
Q 003072 571 PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 650 (850)
Q Consensus 571 pd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp 650 (850)
.+....+++-|+..+|+..+ ++..+..+.+ ....+++.|.....+..-+.. +
T Consensus 189 ~~~~~i~~~G~~~~~k~~~~-li~~~~~l~~-------------~~~~l~i~G~~~~~~~~~~~~-------~------- 240 (359)
T cd03823 189 GGRLRFGFIGQLTPHKGVDL-LLEAFKRLPR-------------GDIELVIVGNGLELEEESYEL-------E------- 240 (359)
T ss_pred CCceEEEEEecCccccCHHH-HHHHHHHHHh-------------cCcEEEEEcCchhhhHHHHhh-------c-------
Confidence 45567788899999998877 6655544322 135788888765554432222 1
Q ss_pred CCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeeccc
Q 003072 651 EIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGAR 730 (850)
Q Consensus 651 ~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG~~ 730 (850)
..+ +|.|+..+.-.....++..||+-...|+ ..|..|.+-+-+|.-|.+.|+|--|..-|+.+.. .++++|...
T Consensus 241 -~~~--~v~~~g~~~~~~~~~~~~~ad~~i~ps~-~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i~~~--~~g~~~~~~ 314 (359)
T cd03823 241 -GDP--RVEFLGAYPQEEIDDFYAEIDVLVVPSI-WPENFPLVIREALAAGVPVIASDIGGMAELVRDG--VNGLLFPPG 314 (359)
T ss_pred -CCC--eEEEeCCCCHHHHHHHHHhCCEEEEcCc-ccCCCChHHHHHHHCCCCEEECCCCCHHHHhcCC--CcEEEECCC
Confidence 112 6888888877777788999999886543 3588888888899999999999777777766442 478887653
No 65
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=92.17 E-value=0.45 Score=49.41 Aligned_cols=122 Identities=13% Similarity=0.047 Sum_probs=83.2
Q ss_pred cccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCC
Q 003072 575 FDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGD 654 (850)
Q Consensus 575 fd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~i~~ 654 (850)
+.+++=|+...|++.+ ++... +. ....+++.|.........+. +..... +.+
T Consensus 173 ~i~~~Gr~~~~Kg~~~-li~~~------~~----------~~~~l~i~G~~~~~~~~~~~----~~~~~~-------~~~ 224 (335)
T cd03802 173 YLLFLGRISPEKGPHL-AIRAA------RR----------AGIPLKLAGPVSDPDYFYRE----IAPELL-------DGP 224 (335)
T ss_pred EEEEEEeeccccCHHH-HHHHH------Hh----------cCCeEEEEeCCCCHHHHHHH----HHHhcc-------cCC
Confidence 5678889999999987 55432 11 13468888876543332222 211110 233
Q ss_pred cceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeecc
Q 003072 655 LLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 729 (850)
Q Consensus 655 ~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG~ 729 (850)
+|.|+..-+=.-...+++++|+....|+ ..|.+|.+-+-||--|++.|+|--|...|+.+.. .|++++..
T Consensus 225 --~v~~~G~~~~~~~~~~~~~~d~~v~ps~-~~E~~~~~~lEAma~G~PvI~~~~~~~~e~i~~~--~~g~l~~~ 294 (335)
T cd03802 225 --DIEYLGEVGGAEKAELLGNARALLFPIL-WEEPFGLVMIEAMACGTPVIAFRRGAVPEVVEDG--VTGFLVDS 294 (335)
T ss_pred --cEEEeCCCCHHHHHHHHHhCcEEEeCCc-ccCCcchHHHHHHhcCCCEEEeCCCCchhheeCC--CcEEEeCC
Confidence 6888876443334567899999997654 5699999999999999999999889888877543 68888864
No 66
>PRK10307 putative glycosyl transferase; Provisional
Probab=91.72 E-value=1.6 Score=48.26 Aligned_cols=127 Identities=12% Similarity=0.120 Sum_probs=79.5
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003072 569 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 648 (850)
Q Consensus 569 ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 648 (850)
++++..+.+++-|+.++|.... ++..+.+ +++ . .+..+++.|.- |. -..+.+++...+
T Consensus 225 ~~~~~~~i~~~G~l~~~kg~~~-li~a~~~---l~~-~--------~~~~l~ivG~g-~~---~~~l~~~~~~~~----- 282 (412)
T PRK10307 225 LPDGKKIVLYSGNIGEKQGLEL-VIDAARR---LRD-R--------PDLIFVICGQG-GG---KARLEKMAQCRG----- 282 (412)
T ss_pred CCCCCEEEEEcCccccccCHHH-HHHHHHH---hcc-C--------CCeEEEEECCC-hh---HHHHHHHHHHcC-----
Confidence 5667788889999999997776 6655433 332 1 14678888842 21 123333333221
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCc----cchhhcccceEeeeccccc--cccccccccc
Q 003072 649 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTS----NMKFAMNGCILIGTLDGAN--VEIRQEVGEE 722 (850)
Q Consensus 649 Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs----~MK~amNG~l~lstlDG~n--vEi~e~~g~e 722 (850)
+. +|.|+.-..-+-...++.+||+-...++. |+.|.+ -.-+|..|++.|+|-.|-. -|+.+ +
T Consensus 283 ---l~---~v~f~G~~~~~~~~~~~~~aDi~v~ps~~--e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~~~i~----~ 350 (412)
T PRK10307 283 ---LP---NVHFLPLQPYDRLPALLKMADCHLLPQKA--GAADLVLPSKLTNMLASGRNVVATAEPGTELGQLVE----G 350 (412)
T ss_pred ---CC---ceEEeCCCCHHHHHHHHHhcCEeEEeecc--CcccccCcHHHHHHHHcCCCEEEEeCCCchHHHHHh----C
Confidence 11 58888765666777788999998876653 555432 2347889999999966532 23332 5
Q ss_pred ceeeecc
Q 003072 723 NFFLFGA 729 (850)
Q Consensus 723 N~f~fG~ 729 (850)
|++++..
T Consensus 351 ~G~~~~~ 357 (412)
T PRK10307 351 IGVCVEP 357 (412)
T ss_pred CcEEeCC
Confidence 7777753
No 67
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=91.23 E-value=0.2 Score=52.89 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=27.7
Q ss_pred CCCCCCCCCCchhchhhhHhhhhccCCCeEEEeecC
Q 003072 40 EPDAALGNGGLGRLASCFLDSMATLNYPAWGYGLRY 75 (850)
Q Consensus 40 E~da~LgnGGLGrLAgc~ldS~a~L~~P~~G~GlrY 75 (850)
|..+=.-.||||..++..-+.++.+|..+.=+--+|
T Consensus 8 E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 8 EYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp -BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred ccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 444447889999999999999999999988887777
No 68
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=91.01 E-value=2.1 Score=47.90 Aligned_cols=130 Identities=17% Similarity=0.096 Sum_probs=81.0
Q ss_pred CcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcC
Q 003072 572 DAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPE 651 (850)
Q Consensus 572 d~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~ 651 (850)
+....+++-|+...|+..+ ++..+.++.+- .+. ....+++.|... .-..+.+++... .
T Consensus 229 ~~~~il~~Grl~~~Kg~~~-li~a~~~l~~~---~p~------~~l~~~iiG~g~----~~~~l~~~~~~~--------~ 286 (407)
T cd04946 229 DTLRIVSCSYLVPVKRVDL-IIKALAALAKA---RPS------IKIKWTHIGGGP----LEDTLKELAESK--------P 286 (407)
T ss_pred CCEEEEEeeccccccCHHH-HHHHHHHHHHh---CCC------ceEEEEEEeCch----HHHHHHHHHHhc--------C
Confidence 3456788999999999877 66655554322 111 123455555422 122333333311 1
Q ss_pred CCCcceEEEecCCC-hhhhhhhcc-ccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeecc
Q 003072 652 IGDLLKVIFVPDYN-VSVAELLIP-ASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 729 (850)
Q Consensus 652 i~~~lkVvFlenY~-vslAe~lip-g~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG~ 729 (850)
..+ +|.|+.-.. -.+.+.+-. .+|+-.+.| ..|+-|.+-|-||.-|.+.|+|--|...|+.++. +|++++-.
T Consensus 287 ~~~--~V~f~G~v~~~e~~~~~~~~~~~v~v~~S--~~Eg~p~~llEAma~G~PVIas~vgg~~e~i~~~--~~G~l~~~ 360 (407)
T cd04946 287 ENI--SVNFTGELSNSEVYKLYKENPVDVFVNLS--ESEGLPVSIMEAMSFGIPVIATNVGGTPEIVDNG--GNGLLLSK 360 (407)
T ss_pred CCc--eEEEecCCChHHHHHHHhhcCCCEEEeCC--ccccccHHHHHHHHcCCCEEeCCCCCcHHHhcCC--CcEEEeCC
Confidence 122 677765433 234444433 467766555 4788999999999999999999989988877543 68888853
No 69
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=90.37 E-value=1.3 Score=49.83 Aligned_cols=140 Identities=14% Similarity=0.164 Sum_probs=89.5
Q ss_pred CCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCc
Q 003072 571 PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 650 (850)
Q Consensus 571 pd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp 650 (850)
++..+.+.+-|++..|.... ++..+.++.+... .... .....++++|.. |. -..+.+++.+.+
T Consensus 230 ~~~~vi~~~grl~~~K~~~~-li~A~~~l~~~~~-~~~~----~~~i~l~ivG~G-~~---~~~l~~~~~~~~------- 292 (415)
T cd03816 230 ERPALLVSSTSWTPDEDFGI-LLDALVAYEKSAA-TGPK----LPKLLCIITGKG-PL---KEKYLERIKELK------- 292 (415)
T ss_pred CCceEEEEeccccCCCCHHH-HHHHHHHHHHhhc-cccc----CCCEEEEEEecC-cc---HHHHHHHHHHcC-------
Confidence 34456667789999999887 7777766654321 0000 112678888863 22 344445554332
Q ss_pred CCCCcceEEEecCC-ChhhhhhhccccccccccCC-CccccCCCccchhhcccceEeeecccccccccccccccceeeec
Q 003072 651 EIGDLLKVIFVPDY-NVSVAELLIPASELSQHIST-AGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 728 (850)
Q Consensus 651 ~i~~~lkVvFlenY-~vslAe~lipg~Dv~~nip~-ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG 728 (850)
+. .++|+..| .-+-...++.+||+..-.+. ..-|.-+..-+-+|.=|.+.|+|--|...|+.++. +|+++++
T Consensus 293 -l~---~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~eiv~~~--~~G~lv~ 366 (415)
T cd03816 293 -LK---KVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDELVKHG--ENGLVFG 366 (415)
T ss_pred -CC---cEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHHHhcCC--CCEEEEC
Confidence 22 38887765 56666779999999862111 11244455567889999999999888888888654 7999996
Q ss_pred cchhhh
Q 003072 729 ARAHEI 734 (850)
Q Consensus 729 ~~~~EV 734 (850)
+.+++
T Consensus 367 -d~~~l 371 (415)
T cd03816 367 -DSEEL 371 (415)
T ss_pred -CHHHH
Confidence 44444
No 70
>PHA01630 putative group 1 glycosyl transferase
Probab=89.32 E-value=1.5 Score=48.49 Aligned_cols=119 Identities=9% Similarity=-0.030 Sum_probs=78.1
Q ss_pred cccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCC
Q 003072 573 AMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEI 652 (850)
Q Consensus 573 ~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~i 652 (850)
.+..++++|++++|...+ ++..+.+ +++ . .....+++.|. -+.. .++ . .+
T Consensus 142 ~~vl~~~g~~~~~Kg~d~-Li~A~~~---l~~-~-------~~~~~llivG~-~~~~---~~l---~-----------~~ 191 (331)
T PHA01630 142 PCVLAILPHSWDRKGGDI-VVKIFHE---LQN-E-------GYDFYFLIKSS-NMLD---PRL---F-----------GL 191 (331)
T ss_pred CEEEEEeccccccCCHHH-HHHHHHH---HHh-h-------CCCEEEEEEeC-cccc---hhh---c-----------cc
Confidence 346678999999998877 6655444 332 1 11456677772 1111 111 0 01
Q ss_pred CCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeeccc
Q 003072 653 GDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGAR 730 (850)
Q Consensus 653 ~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG~~ 730 (850)
.+ ..-+++ -+--..++.+||+....|+ .|+-|..-.-||.-|++.|+|-.|.+-|+.++ ++|+|++...
T Consensus 192 ~~--~~~~v~---~~~l~~~y~~aDv~v~pS~--~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~--~~ng~lv~~~ 260 (331)
T PHA01630 192 NG--VKTPLP---DDDIYSLFAGCDILFYPVR--GGAFEIPVIEALALGLDVVVTEKGAWSEWVLS--NLDVYWIKSG 260 (331)
T ss_pred cc--eeccCC---HHHHHHHHHhCCEEEECCc--cccCChHHHHHHHcCCCEEEeCCCCchhhccC--CCceEEeeec
Confidence 11 011222 2344557899999999988 49999999999999999999999998887654 4899988643
No 71
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=88.50 E-value=9.5 Score=44.03 Aligned_cols=142 Identities=12% Similarity=-0.002 Sum_probs=85.3
Q ss_pred CCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCc-HHHHHHHHHHHHHhhhhcCC
Q 003072 571 PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATY-VQAKRIVKFITDVGATVNHD 649 (850)
Q Consensus 571 pd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y-~~aK~iIk~I~~va~~vn~D 649 (850)
++..+++++-|+...|.... ++.-+.++.+- .|.-+ ..++++..|...-++ ..-+++.+.+.+++..+|..
T Consensus 262 ~~~~~il~vgRl~~~Kgi~~-ll~A~~~ll~~---~p~~~----~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~ 333 (460)
T cd03788 262 GGRKLIVGVDRLDYSKGIPE-RLLAFERLLER---YPEWR----GKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGK 333 (460)
T ss_pred CCCEEEEEecCccccCCHHH-HHHHHHHHHHh---Chhhc----CCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhc
Confidence 46667899999999999887 76666554221 22211 124565554433222 22345566666665555532
Q ss_pred cCCCCcceEEEecCC-ChhhhhhhccccccccccCCCccccCCCccchhhcccce-----Eeeecccccccccccccccc
Q 003072 650 PEIGDLLKVIFVPDY-NVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCI-----LIGTLDGANVEIRQEVGEEN 723 (850)
Q Consensus 650 p~i~~~lkVvFlenY-~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l-----~lstlDG~nvEi~e~~g~eN 723 (850)
-...+.-.|+|+..+ +-+-...+..+||+-...|++ |+-|..-+-||.=|+. .+|..-|.--+ .++
T Consensus 334 ~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~~--Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~------~~~ 405 (460)
T cd03788 334 FGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLR--DGMNLVAKEYVACQDDDPGVLILSEFAGAAEE------LSG 405 (460)
T ss_pred cCCCCceeEEEEeCCCCHHHHHHHHHhccEEEeCccc--cccCcccceeEEEecCCCceEEEeccccchhh------cCC
Confidence 111112247777543 556666788999999998874 8888888888887774 66655555432 145
Q ss_pred eeeec
Q 003072 724 FFLFG 728 (850)
Q Consensus 724 ~f~fG 728 (850)
++++-
T Consensus 406 g~lv~ 410 (460)
T cd03788 406 ALLVN 410 (460)
T ss_pred CEEEC
Confidence 56554
No 72
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=84.25 E-value=2.9 Score=43.73 Aligned_cols=126 Identities=15% Similarity=0.141 Sum_probs=83.1
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003072 569 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 648 (850)
Q Consensus 569 ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 648 (850)
++++..+.+++=|+...|...+ ++..+.+ +++ . ..+.++++.|. .|. .+.+.+++....
T Consensus 184 ~~~~~~~~l~~g~~~~~kg~~~-li~a~~~---l~~-~-------~~~~~l~i~G~-g~~---~~~~~~~~~~~~----- 242 (360)
T cd04951 184 VKNDTFVILAVGRLVEAKDYPN-LLKAFAK---LLS-D-------YLDIKLLIAGD-GPL---RATLERLIKALG----- 242 (360)
T ss_pred cCCCCEEEEEEeeCchhcCcHH-HHHHHHH---HHh-h-------CCCeEEEEEcC-CCc---HHHHHHHHHhcC-----
Confidence 4567778888999999998877 6555443 332 0 12468888884 221 234444443332
Q ss_pred CcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeec
Q 003072 649 DPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFG 728 (850)
Q Consensus 649 Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG 728 (850)
..+ +|.|+.. ++-...++.+||+-...|+ .|..|..-+-+|.-|++.|++--|...|+.++ ++++|-
T Consensus 243 ---~~~--~v~~~g~--~~~~~~~~~~ad~~v~~s~--~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i~~----~g~~~~ 309 (360)
T cd04951 243 ---LSN--RVKLLGL--RDDIAAYYNAADLFVLSSA--WEGFGLVVAEAMACELPVVATDAGGVREVVGD----SGLIVP 309 (360)
T ss_pred ---CCC--cEEEecc--cccHHHHHHhhceEEeccc--ccCCChHHHHHHHcCCCEEEecCCChhhEecC----CceEeC
Confidence 122 5777763 2334457899999876655 38888888999999999999977887776643 566553
No 73
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=82.61 E-value=2.7 Score=38.60 Aligned_cols=124 Identities=16% Similarity=0.079 Sum_probs=65.6
Q ss_pred Ccccccccccccccccccchhhh-HHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCc
Q 003072 572 DAMFDIQVKRIHEYKRQLMNILG-IVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 650 (850)
Q Consensus 572 d~lfd~~~kR~heYKRq~Lnil~-ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp 650 (850)
|.++.+.+-+++.+|.-.. ++. .+.++.+- ..+.+++|.|...+ + ++.. . .
T Consensus 1 ~~~~i~~~g~~~~~k~~~~-li~~~~~~l~~~-----------~p~~~l~i~G~~~~------~-l~~~---~-----~- 52 (135)
T PF13692_consen 1 DILYIGYLGRIRPDKGLEE-LIEAALERLKEK-----------HPDIELIIIGNGPD------E-LKRL---R-----R- 52 (135)
T ss_dssp --EEEE--S-SSGGGTHHH-HHH-HHHHHHHH-----------STTEEEEEECESS-------H-HCCH---H-----H-
T ss_pred Ccccccccccccccccccc-hhhhHHHHHHHH-----------CcCEEEEEEeCCHH------H-HHHh---c-----C-
Confidence 3567788888988888776 665 55443221 22478888888433 1 2221 0 1
Q ss_pred CCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeeccc
Q 003072 651 EIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGAR 730 (850)
Q Consensus 651 ~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG~~ 730 (850)
-+|.|++.. +-...++.+||+.... .+.-+.+++.-+-++..|++.|.+-.| .-++.+. ...++++..+
T Consensus 53 -----~~v~~~g~~--~e~~~~l~~~dv~l~p-~~~~~~~~~k~~e~~~~G~pvi~~~~~-~~~~~~~--~~~~~~~~~~ 121 (135)
T PF13692_consen 53 -----PNVRFHGFV--EELPEILAAADVGLIP-SRFNEGFPNKLLEAMAAGKPVIASDNG-AEGIVEE--DGCGVLVAND 121 (135)
T ss_dssp -----CTEEEE-S---HHHHHHHHC-SEEEE--BSS-SCC-HHHHHHHCTT--EEEEHHH-CHCHS-----SEEEE-TT-
T ss_pred -----CCEEEcCCH--HHHHHHHHhCCEEEEE-eeCCCcCcHHHHHHHHhCCCEEECCcc-hhhheee--cCCeEEECCC
Confidence 169998887 3445568889999954 444446777888899999999998664 3333332 2344444444
Q ss_pred hhhh
Q 003072 731 AHEI 734 (850)
Q Consensus 731 ~~EV 734 (850)
.+++
T Consensus 122 ~~~l 125 (135)
T PF13692_consen 122 PEEL 125 (135)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 74
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=80.68 E-value=15 Score=40.53 Aligned_cols=109 Identities=6% Similarity=0.028 Sum_probs=65.3
Q ss_pred CCcccccccccccccccccchhhhHHHH-HHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCC
Q 003072 571 PDAMFDIQVKRIHEYKRQLMNILGIVYR-YKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHD 649 (850)
Q Consensus 571 pd~lfd~~~kR~heYKRq~Lnil~ii~r-y~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~D 649 (850)
++..+.+++=|+..+|.... ++..+.. +.+++. . .....+++.|.... +. +.+++. .
T Consensus 222 ~~~~~ilf~G~l~~~k~~~~-l~~~~~~~~~~l~~-~-------~p~~~l~ivG~g~~-----~~----~~~l~~----~ 279 (397)
T TIGR03087 222 PGKRVLVFTGAMDYWPNIDA-VVWFAERVFPAVRA-R-------RPAAEFYIVGAKPS-----PA----VRALAA----L 279 (397)
T ss_pred CCCcEEEEEEecCCccCHHH-HHHHHHHHHHHHHH-H-------CCCcEEEEECCCCh-----HH----HHHhcc----C
Confidence 45567888999999997765 4433322 333432 1 11357888886532 11 222221 1
Q ss_pred cCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeeccc
Q 003072 650 PEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDG 710 (850)
Q Consensus 650 p~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG 710 (850)
+ .|.|+..-+ .+ ..++.+||+...-|+. -|..|..-+-+|.-|++.|+|-.|
T Consensus 280 ~------~V~~~G~v~-~~-~~~~~~adv~v~Ps~~-~eG~~~~~lEAma~G~PVV~t~~~ 331 (397)
T TIGR03087 280 P------GVTVTGSVA-DV-RPYLAHAAVAVAPLRI-ARGIQNKVLEAMAMAKPVVASPEA 331 (397)
T ss_pred C------CeEEeeecC-CH-HHHHHhCCEEEecccc-cCCcccHHHHHHHcCCCEEecCcc
Confidence 1 366664332 33 4577999999875542 244455577899999999999654
No 75
>PHA01633 putative glycosyl transferase group 1
Probab=78.22 E-value=8.7 Score=43.16 Aligned_cols=122 Identities=16% Similarity=0.068 Sum_probs=82.5
Q ss_pred CCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCc
Q 003072 571 PDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP 650 (850)
Q Consensus 571 pd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp 650 (850)
|+.+..+++-|++.+|.+.+ ++..+.++.+- .+.-. ...++++.|. + .+.+ .
T Consensus 146 ~~~~~i~~vGRl~~~KG~~~-LI~A~~~L~~~---~p~~~----~~i~l~ivG~--------~----~~~~--------l 197 (335)
T PHA01633 146 PDTIKFGIVSGLTKRKNMDL-MLQVFNELNTK---YPDIA----KKIHFFVISH--------K----QFTQ--------L 197 (335)
T ss_pred CCCeEEEEEeCCccccCHHH-HHHHHHHHHHh---CCCcc----ccEEEEEEcH--------H----HHHH--------c
Confidence 46677888999999999999 87777654321 11100 0235666662 1 1111 1
Q ss_pred CCCCcceEEEecCCC---hhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeee
Q 003072 651 EIGDLLKVIFVPDYN---VSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLF 727 (850)
Q Consensus 651 ~i~~~lkVvFlenY~---vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~f 727 (850)
.+.+ +|.|+-.+. -+-...++.+||+-..-|+ .|+.|-.-+-||--|++.|++--|...|+. |+...++|
T Consensus 198 ~l~~--~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~--~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~---g~~~~~Li 270 (335)
T PHA01633 198 EVPA--NVHFVAEFGHNSREYIFAFYGAMDFTIVPSG--TEGFGMPVLESMAMGTPVIHQLMPPLDEFT---SWQWNLLI 270 (335)
T ss_pred CCCC--cEEEEecCCCCCHHHHHHHHHhCCEEEECCc--cccCCHHHHHHHHcCCCEEEccCCCceeec---CCccceee
Confidence 2334 688875332 2334568899999998887 599999999999999999999888888875 33334666
No 76
>PLN02275 transferase, transferring glycosyl groups
Probab=76.94 E-value=13 Score=41.17 Aligned_cols=135 Identities=13% Similarity=0.085 Sum_probs=84.4
Q ss_pred cccccccccccccccchhhhHHHHHHHHHhcChh--h---hh-cccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcC
Q 003072 575 FDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAV--E---RK-AKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNH 648 (850)
Q Consensus 575 fd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~--~---r~-~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~ 648 (850)
+.+.+-|+...|.... ++.-+.++......... . ++ .......|++.|.- |.- .++-+++.+.+
T Consensus 215 ~i~~~grl~~~k~~~~-li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G-~~~---~~l~~~~~~~~----- 284 (371)
T PLN02275 215 LVVSSTSWTPDEDFGI-LLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKG-PQK---AMYEEKISRLN----- 284 (371)
T ss_pred EEEEeCceeccCCHHH-HHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCC-CCH---HHHHHHHHHcC-----
Confidence 4456789999999877 66665555322100000 0 00 00123788888864 221 23334443332
Q ss_pred CcCCCCcceEEEecCC-ChhhhhhhccccccccccCCCc--cccCCCccchhhcccceEeeeccccccccccccccccee
Q 003072 649 DPEIGDLLKVIFVPDY-NVSVAELLIPASELSQHISTAG--MEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFF 725 (850)
Q Consensus 649 Dp~i~~~lkVvFlenY-~vslAe~lipg~Dv~~nip~ag--~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f 725 (850)
+. .|+|++.| .-+-...++.+||+..- |..+ -|..|++-+-+|.-|.+.|+|-.|..-|+.++. +|+|
T Consensus 285 ---l~---~v~~~~~~~~~~~~~~~l~~aDv~v~-~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~eiv~~g--~~G~ 355 (371)
T PLN02275 285 ---LR---HVAFRTMWLEAEDYPLLLGSADLGVS-LHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGELVKDG--KNGL 355 (371)
T ss_pred ---CC---ceEEEcCCCCHHHHHHHHHhCCEEEE-eccccccccccHHHHHHHHCCCCEEEecCCChHHHccCC--CCeE
Confidence 22 38887764 45555677899999863 2211 266677788899999999999999988888654 8999
Q ss_pred eec
Q 003072 726 LFG 728 (850)
Q Consensus 726 ~fG 728 (850)
++.
T Consensus 356 lv~ 358 (371)
T PLN02275 356 LFS 358 (371)
T ss_pred EEC
Confidence 997
No 77
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=76.74 E-value=14 Score=40.19 Aligned_cols=125 Identities=11% Similarity=0.022 Sum_probs=76.7
Q ss_pred ccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCC
Q 003072 574 MFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIG 653 (850)
Q Consensus 574 lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~i~ 653 (850)
...+++=|+..+|...+ ...+..+.+++ .+..+++.|.. |... .+-+++... .+.
T Consensus 181 ~~i~~~Grl~~~~~k~~--~~l~~a~~~~~-----------~~~~l~ivG~g-~~~~---~l~~~~~~~--------~l~ 235 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNV--KELFDGLSQTT-----------GEWQLHIIGDG-SDFE---KCKAYSREL--------GIE 235 (359)
T ss_pred cEEEEEEEEecccCcCH--HHHHHHHHhhC-----------CCeEEEEEeCC-ccHH---HHHHHHHHc--------CCC
Confidence 44567778876644322 22233333332 14578888854 3322 233333222 133
Q ss_pred CcceEEEecCCCh--hhhhhhccccccccccCCCccccCCCccchhhcccceEeeec-ccccccccccccccceeeecc
Q 003072 654 DLLKVIFVPDYNV--SVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTL-DGANVEIRQEVGEENFFLFGA 729 (850)
Q Consensus 654 ~~lkVvFlenY~v--slAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstl-DG~nvEi~e~~g~eN~f~fG~ 729 (850)
+ +|.|+.--+. +.....+..+|+....|+ .|+-|.+-.-||.-|.+.|+|- .|...|+.+. +.|++++..
T Consensus 236 ~--~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~--~Egf~~~~lEAma~G~Pvv~s~~~~g~~eiv~~--~~~G~lv~~ 308 (359)
T PRK09922 236 Q--RIIWHGWQSQPWEVVQQKIKNVSALLLTSK--FEGFPMTLLEAMSYGIPCISSDCMSGPRDIIKP--GLNGELYTP 308 (359)
T ss_pred C--eEEEecccCCcHHHHHHHHhcCcEEEECCc--ccCcChHHHHHHHcCCCEEEeCCCCChHHHccC--CCceEEECC
Confidence 3 6888865332 333445567899998775 6999999999999999999996 5767777654 368888853
No 78
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=75.89 E-value=1.5e+02 Score=34.61 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=76.9
Q ss_pred CcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEec-cCCCCcHHHHHHHHHHHHHhhhhcCCc
Q 003072 572 DAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGG-KAFATYVQAKRIVKFITDVGATVNHDP 650 (850)
Q Consensus 572 d~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaG-KA~P~y~~aK~iIk~I~~va~~vn~Dp 650 (850)
+...++.+=|++.-|.... +|.-+.++.+ + .|..+ ..+++|..| ........-..+.+.|.+++..||..-
T Consensus 258 ~~~vIl~VgRLd~~KGi~~-ll~A~~~ll~--~-~p~~~----~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~ 329 (456)
T TIGR02400 258 GRKLIIGVDRLDYSKGLPE-RLLAFERFLE--E-HPEWR----GKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRF 329 (456)
T ss_pred CCeEEEEccccccccCHHH-HHHHHHHHHH--h-Ccccc----CceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhcc
Confidence 4557789999999998877 7777666532 1 33221 123455443 222112222456666666655565321
Q ss_pred CCCCcceEEEecC-CChhhhhhhccccccccccCCCccccCCCccchhhcc-----cceEeeecccccccc
Q 003072 651 EIGDLLKVIFVPD-YNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMN-----GCILIGTLDGANVEI 715 (850)
Q Consensus 651 ~i~~~lkVvFlen-Y~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amN-----G~l~lstlDG~nvEi 715 (850)
..-+...|+|+.. .+-+---.+..+|||-.-+|.+ |.-|..-+-||.= |++.+|...|.--++
T Consensus 330 ~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~~--EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l 398 (456)
T TIGR02400 330 GTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLR--DGMNLVAKEYVAAQDPKDGVLILSEFAGAAQEL 398 (456)
T ss_pred CCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECccc--cccCccHHHHHHhcCCCCceEEEeCCCCChHHh
Confidence 1112234777764 3444555678999998887764 5545444444433 556888888876544
No 79
>PLN02501 digalactosyldiacylglycerol synthase
Probab=58.01 E-value=38 Score=42.30 Aligned_cols=119 Identities=10% Similarity=0.029 Sum_probs=79.7
Q ss_pred cccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCcc
Q 003072 577 IQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDLL 656 (850)
Q Consensus 577 ~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~i~~~l 656 (850)
.++=|++..|.... ++..+.. ++. . .....+++.|.- |.- ..+-+++.+++ +
T Consensus 550 LfVGRLa~EKGld~-LLeAla~---L~~-~-------~pnvrLvIVGDG-P~r---eeLe~la~eLg------------L 601 (794)
T PLN02501 550 YFLGKMVWAKGYRE-LIDLLAK---HKN-E-------LDGFNLDVFGNG-EDA---HEVQRAAKRLD------------L 601 (794)
T ss_pred EEEEcccccCCHHH-HHHHHHH---HHh-h-------CCCeEEEEEcCC-ccH---HHHHHHHHHcC------------C
Confidence 45669999999877 6655433 332 0 113567777753 321 22333333221 2
Q ss_pred eEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeeccc
Q 003072 657 KVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGAR 730 (850)
Q Consensus 657 kVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG~~ 730 (850)
.|.|+.. ...+..++.++||-.+-|+ .|.=|++-+-||.-|++.|+|--|.+..+. +..|+++++..
T Consensus 602 ~V~FLG~--~dd~~~lyasaDVFVlPS~--sEgFGlVlLEAMA~GlPVVATd~pG~e~V~---~g~nGll~~D~ 668 (794)
T PLN02501 602 NLNFLKG--RDHADDSLHGYKVFINPSI--SDVLCTATAEALAMGKFVVCADHPSNEFFR---SFPNCLTYKTS 668 (794)
T ss_pred EEEecCC--CCCHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCCEEEecCCCCceEe---ecCCeEecCCH
Confidence 5788754 4556678999999999887 599999999999999999999877654322 34788888653
No 80
>PRK10125 putative glycosyl transferase; Provisional
Probab=56.94 E-value=25 Score=39.91 Aligned_cols=57 Identities=12% Similarity=-0.053 Sum_probs=47.7
Q ss_pred hhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeeccc
Q 003072 669 AELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGAR 730 (850)
Q Consensus 669 Ae~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG~~ 730 (850)
-..++.+||+....|. .|+-|+.-+-||.-|.+.|+|-=|...|+.+. .|++++...
T Consensus 300 l~~~y~~aDvfV~pS~--~Egfp~vilEAmA~G~PVVat~~gG~~Eiv~~---~~G~lv~~~ 356 (405)
T PRK10125 300 LMSALNQMDALVFSSR--VDNYPLILCEALSIGVPVIATHSDAAREVLQK---SGGKTVSEE 356 (405)
T ss_pred HHHHHHhCCEEEECCc--cccCcCHHHHHHHcCCCEEEeCCCChHHhEeC---CcEEEECCC
Confidence 3457789999998776 79999999999999999999988888887643 589998653
No 81
>PLN02846 digalactosyldiacylglycerol synthase
Probab=43.74 E-value=76 Score=37.46 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=79.8
Q ss_pred ccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCCCCc
Q 003072 576 DIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEIGDL 655 (850)
Q Consensus 576 d~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~i~~~ 655 (850)
.+++=|++.-|.... ++..+ .+|+. . .....+++.|.- |.-. ++-+++.+++ +
T Consensus 231 ~l~vGRL~~eK~~~~-Li~a~---~~l~~-~-------~~~~~l~ivGdG-p~~~---~L~~~a~~l~--------l--- 283 (462)
T PLN02846 231 AYYIGKMVWSKGYKE-LLKLL---HKHQK-E-------LSGLEVDLYGSG-EDSD---EVKAAAEKLE--------L--- 283 (462)
T ss_pred EEEEecCcccCCHHH-HHHHH---HHHHh-h-------CCCeEEEEECCC-ccHH---HHHHHHHhcC--------C---
Confidence 568899999998877 55443 44432 1 012456666655 3322 2222222221 1
Q ss_pred ceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeecc
Q 003072 656 LKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 729 (850)
Q Consensus 656 lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG~ 729 (850)
.+.|+..+. -.+.++.++||..+.|+ .|.-|+.-+-||.-|.+.|++-.|.+ |+... ..|++++..
T Consensus 284 -~~~vf~G~~--~~~~~~~~~DvFv~pS~--~Et~g~v~lEAmA~G~PVVa~~~~~~-~~v~~--~~ng~~~~~ 349 (462)
T PLN02846 284 -DVRVYPGRD--HADPLFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHPSN-EFFKQ--FPNCRTYDD 349 (462)
T ss_pred -cEEEECCCC--CHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCcEEEecCCCc-ceeec--CCceEecCC
Confidence 233455552 44568899999999997 69999999999999999999988875 76655 489999954
No 82
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=43.10 E-value=1.5e+02 Score=29.29 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=77.3
Q ss_pred ccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCC-eEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCcCC
Q 003072 574 MFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVP-RVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPEI 652 (850)
Q Consensus 574 lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P-~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp~i 652 (850)
.+..++-|+.+.|+..+ ++..+..+.+. .| ..+++.|..... -..+.+++.... .
T Consensus 200 ~~i~~~g~~~~~k~~~~-~i~~~~~~~~~------------~~~~~~~~~g~~~~~---~~~~~~~~~~~~----~---- 255 (381)
T COG0438 200 FVVLYVGRLDPEKGLDL-LIEAAAKLKKR------------GPDIKLVIVGDGPER---REELEKLAKKLG----L---- 255 (381)
T ss_pred eEEEEeeccChhcCHHH-HHHHHHHhhhh------------cCCeEEEEEcCCCcc---HHHHHHHHHHhC----C----
Confidence 67888888988888777 55544443222 12 567777777665 111111222221 1
Q ss_pred CCcceEEEecCCC-hhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceeeecc
Q 003072 653 GDLLKVIFVPDYN-VSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFLFGA 729 (850)
Q Consensus 653 ~~~lkVvFlenY~-vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~fG~ 729 (850)
.+ +|.|+-.-. -.+.+ +...+|+...-|.- |+-|..-+.++.-|.+.|+|-=|...|+....+ +++++..
T Consensus 256 ~~--~v~~~g~~~~~~~~~-~~~~~~~~v~ps~~--e~~~~~~~Ea~a~g~pvi~~~~~~~~e~~~~~~--~g~~~~~ 326 (381)
T COG0438 256 ED--NVKFLGYVPDEELAE-LLASADVFVLPSLS--EGFGLVLLEAMAAGTPVIASDVGGIPEVVEDGE--TGLLVPP 326 (381)
T ss_pred CC--cEEEecccCHHHHHH-HHHhCCEEEecccc--ccchHHHHHHHhcCCcEEECCCCChHHHhcCCC--ceEecCC
Confidence 12 566633322 23444 67777888887766 888888889999999999998778887765442 4554443
No 83
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=36.65 E-value=74 Score=29.70 Aligned_cols=38 Identities=32% Similarity=0.373 Sum_probs=30.4
Q ss_pred CCCceEEeCCCC---hhhhHHHHHHHHHHhcCCCHHHHHHHHccc
Q 003072 241 PEKVAVQMNDTH---PTLCIPELIRILIDLKGLSWKEAWNITQRT 282 (850)
Q Consensus 241 ~~~~~ihlNDtH---palai~ElmR~Lid~~gl~~~eAw~i~~~~ 282 (850)
+.++.||.+.|+ +++++..+|+ ..+++.++|++.+|+.
T Consensus 81 ~~~vlVHC~~G~~Rs~~~~~~~l~~----~~~~~~~~a~~~vr~~ 121 (139)
T cd00127 81 GGKVLVHCLAGVSRSATLVIAYLMK----TLGLSLREAYEFVKSR 121 (139)
T ss_pred CCcEEEECCCCCchhHHHHHHHHHH----HcCCCHHHHHHHHHHH
Confidence 578899999998 4666666665 3499999999998875
No 84
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=31.98 E-value=2.9e+02 Score=33.08 Aligned_cols=176 Identities=11% Similarity=0.073 Sum_probs=102.0
Q ss_pred CcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEeccCCCCcHHHHHHHHHHHHHhhhhcCCc-
Q 003072 572 DAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDP- 650 (850)
Q Consensus 572 d~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGKA~P~y~~aK~iIk~I~~va~~vn~Dp- 650 (850)
.++.=++|=|+ +=|+..- ++..+.+|.+- .| -.++.|-|...+. ...+.+-++|..+....+.+.
T Consensus 320 ~~~I~v~idrL-~ek~~~~-~I~av~~~~~~---~p--------~~~L~~~gy~~~~-~~~~~l~~~i~~~~~~~~~~~~ 385 (519)
T TIGR03713 320 ETEIGFWIDGL-SDEELQQ-ILQQLLQYILK---NP--------DYELKILTYNNDN-DITQLLEDILEQINEEYNQDKN 385 (519)
T ss_pred ceEEEEEcCCC-ChHHHHH-HHHHHHHHHhh---CC--------CeEEEEEEecCch-hHHHHHHHHHHHHHhhhchhhh
Confidence 34444445588 7777666 66666555332 22 3477888888553 234455455555543211111
Q ss_pred -----------------CCCCcceEEEecCCCh--hhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccc
Q 003072 651 -----------------EIGDLLKVIFVPDYNV--SVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGA 711 (850)
Q Consensus 651 -----------------~i~~~lkVvFlenY~v--slAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~ 711 (850)
+-......|++.+|-- ++.+.+ .-+. +-+.+...|.=| +-|-|+--|++.| .=|.
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~v~f~gy~~e~dl~~~~-~~ar--l~id~s~~eg~~-~~ieAiS~GiPqI--nyg~ 459 (519)
T TIGR03713 386 FFSLSEQDENQPILQTDEEQKEKERIAFTTLTNEEDLISAL-DKLR--LIIDLSKEPDLY-TQISGISAGIPQI--NKVE 459 (519)
T ss_pred ccccchhhhhhhcccchhhcccccEEEEEecCCHHHHHHHH-hhhe--EEEECCCCCChH-HHHHHHHcCCCee--ecCC
Confidence 1111114688888877 666433 3333 344555566677 7788888888888 1111
Q ss_pred cccccccccccceeeeccchhhhhhhhhhcCCCCCCCChhHHHHHHHHhcCCCCcccHHHHHHHhccCCCCCCCcccccc
Q 003072 712 NVEIRQEVGEENFFLFGARAHEIAGLRKERSEGKFVPDARFEEVKKFVKSGVFGSYNYDELMGSLEGNEGFGQADYFLVG 791 (850)
Q Consensus 712 nvEi~e~~g~eN~f~fG~~~~EV~~l~~~~~~~~~~~~~~l~~v~~~i~~g~f~~~~~~~l~~~L~~~~~~~~~D~y~vl 791 (850)
-|+.+. ..||||.|. ...|.
T Consensus 460 -~~~V~d--~~NG~li~d---------------------------------------~~~l~------------------ 479 (519)
T TIGR03713 460 -TDYVEH--NKNGYIIDD---------------------------------------ISELL------------------ 479 (519)
T ss_pred -ceeeEc--CCCcEEeCC---------------------------------------HHHHH------------------
Confidence 122222 266666632 22222
Q ss_pred cchhhHHHHHHHHHHHhcCHhHHHHHHHHHhhcCCCCChhHHHHHH
Q 003072 792 KDFPSYLECQEKVDEAYCDQKRWTRMSIMNTAGSSKFSSDRTIQEY 837 (850)
Q Consensus 792 ~DF~sY~~aq~~v~~~Y~d~~~W~~~~i~niA~sg~FSSDRtI~eY 837 (850)
+.+..+..+++.|.+++..++..+-.||++..+...
T Consensus 480 ----------~al~~~L~~~~~wn~~~~~sy~~~~~yS~~~i~~kW 515 (519)
T TIGR03713 480 ----------KALDYYLDNLKNWNYSLAYSIKLIDDYSSENIIERL 515 (519)
T ss_pred ----------HHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 234445678899999999999999999999888653
No 85
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=29.31 E-value=1.2e+02 Score=28.68 Aligned_cols=40 Identities=25% Similarity=0.318 Sum_probs=31.1
Q ss_pred CCCCceEEeCCCC---hhhhHHHHHHHHHHhcCCCHHHHHHHHccce
Q 003072 240 FPEKVAVQMNDTH---PTLCIPELIRILIDLKGLSWKEAWNITQRTV 283 (850)
Q Consensus 240 l~~~~~ihlNDtH---palai~ElmR~Lid~~gl~~~eAw~i~~~~~ 283 (850)
-+.++.+|+..|. +++++.-||+ ..|+++++|++.+++.-
T Consensus 77 ~~~~VlVHC~~G~~RS~~v~~~yl~~----~~~~~~~~A~~~v~~~R 119 (138)
T smart00195 77 KGGKVLVHCQAGVSRSATLIIAYLMK----YRNLSLNDAYDFVKDRR 119 (138)
T ss_pred CCCeEEEECCCCCchHHHHHHHHHHH----HhCCCHHHHHHHHHHHC
Confidence 3578899999996 5666666665 46999999999987654
No 86
>PF14474 RTC4: RTC4-like domain
Probab=29.11 E-value=44 Score=32.71 Aligned_cols=32 Identities=28% Similarity=0.512 Sum_probs=25.8
Q ss_pred hhhHHHHH-HHHHHhcCCCHHHHHHHHccceee
Q 003072 254 TLCIPELI-RILIDLKGLSWKEAWNITQRTVAY 285 (850)
Q Consensus 254 alai~Elm-R~Lid~~gl~~~eAw~i~~~~~~f 285 (850)
.+++||++ |..+++-+++.++|++|.+.+.-|
T Consensus 85 ~VLvPEl~~~LI~EDm~v~~~~A~~il~eS~~~ 117 (124)
T PF14474_consen 85 YVLVPELAVRLIMEDMGVDDEEARQILEESSEY 117 (124)
T ss_pred HHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 46799994 555577899999999999988655
No 87
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=27.66 E-value=2.5e+02 Score=33.85 Aligned_cols=148 Identities=15% Similarity=0.079 Sum_probs=102.4
Q ss_pred CCCCcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEecc--CCCCcHHHHHHHHHHHHHhhhh
Q 003072 569 VSPDAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGK--AFATYVQAKRIVKFITDVGATV 646 (850)
Q Consensus 569 ldpd~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGK--A~P~y~~aK~iIk~I~~va~~v 646 (850)
+.-.-+|+.-+-||..=|.|.| +|....+++.... +++ +.-...+|+|+ --+.+..=...++-+.++.+..
T Consensus 269 v~~~d~~~~siN~~~pgkd~~l-~l~a~~~~~~~i~-~~~-----~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~ 341 (495)
T KOG0853|consen 269 VSGIDRFFPSINRFEPGKDQDL-ALPAFTLLHDSIP-EPS-----ISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEY 341 (495)
T ss_pred ecccceEeeeeeecCCCCCcee-ehhhHHhhhcccC-CCC-----CCceEEEEecCCCccccchhhHHHHHHHHHHHHHh
Confidence 3444677788889999999999 8886666554432 111 22334555552 2344555556666666666543
Q ss_pred cCCcCCCCcceEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecccccccccccccccceee
Q 003072 647 NHDPEIGDLLKVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIRQEVGEENFFL 726 (850)
Q Consensus 647 n~Dp~i~~~lkVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlDG~nvEi~e~~g~eN~f~ 726 (850)
+ -.++ .|.|++-- +-++...-++|.--.+.++..|+=|=--.-||-=|.++|+|--|--+||.... .|||+
T Consensus 342 ~---l~g~--~v~~~~s~--~~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~~--~tG~l 412 (495)
T KOG0853|consen 342 D---LLGQ--FVWFLPST--TRVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVHG--VTGLL 412 (495)
T ss_pred C---ccCc--eEEEecCC--chHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEcC--Cccee
Confidence 2 2244 67787763 33344556677777777777799999999999999999999999999999766 99999
Q ss_pred eccchh
Q 003072 727 FGARAH 732 (850)
Q Consensus 727 fG~~~~ 732 (850)
.-.+.+
T Consensus 413 ~dp~~e 418 (495)
T KOG0853|consen 413 IDPGQE 418 (495)
T ss_pred eCCchH
Confidence 988544
No 88
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=26.27 E-value=2.9e+02 Score=30.32 Aligned_cols=69 Identities=17% Similarity=0.070 Sum_probs=44.9
Q ss_pred eEEEecCCChhhhhhhccccccccccCCCccccCCCccchhhcccceEeeecc-cccccccccccccceeeeccchhhhh
Q 003072 657 KVIFVPDYNVSVAELLIPASELSQHISTAGMEASGTSNMKFAMNGCILIGTLD-GANVEIRQEVGEENFFLFGARAHEIA 735 (850)
Q Consensus 657 kVvFlenY~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~amNG~l~lstlD-G~nvEi~e~~g~eN~f~fG~~~~EV~ 735 (850)
+|.|++...-.-.-.++..||+-.- .||+.-+-+|.=|++.|.+.+ |.+.|+.+. .++++.+.+.+++.
T Consensus 256 ~v~~~~~~~~~~~~~~l~~ad~vv~-------~Sg~~~~EA~a~g~PvI~~~~~~~~~e~~~~---g~~~lv~~d~~~i~ 325 (365)
T TIGR00236 256 RVHLIEPLEYLDFLNLAANSHLILT-------DSGGVQEEAPSLGKPVLVLRDTTERPETVEA---GTNKLVGTDKENIT 325 (365)
T ss_pred CEEEECCCChHHHHHHHHhCCEEEE-------CChhHHHHHHHcCCCEEECCCCCCChHHHhc---CceEEeCCCHHHHH
Confidence 5888875443333356788888642 247777889999999999866 656666642 24445565555553
No 89
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=22.82 E-value=1.3e+02 Score=28.10 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=31.6
Q ss_pred CCCceEEeCCCC---hhhhHHHHHHHHHHhcCCCHHHHHHHHccc
Q 003072 241 PEKVAVQMNDTH---PTLCIPELIRILIDLKGLSWKEAWNITQRT 282 (850)
Q Consensus 241 ~~~~~ihlNDtH---palai~ElmR~Lid~~gl~~~eAw~i~~~~ 282 (850)
+.++.||+.-|. |++++.-||+ ..|++.++|++.+++.
T Consensus 73 ~~~VlVHC~~G~~RS~~v~~ayLm~----~~~~~~~~A~~~v~~~ 113 (133)
T PF00782_consen 73 GGKVLVHCKAGLSRSGAVAAAYLMK----KNGMSLEEAIEYVRSR 113 (133)
T ss_dssp TSEEEEEESSSSSHHHHHHHHHHHH----HHTSSHHHHHHHHHHH
T ss_pred cceeEEEeCCCcccchHHHHHHHHH----HcCCCHHHHHHHHHHH
Confidence 356889999999 8888887776 4699999999998765
No 90
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=20.65 E-value=4.8e+02 Score=32.34 Aligned_cols=135 Identities=11% Similarity=0.090 Sum_probs=75.0
Q ss_pred CcccccccccccccccccchhhhHHHHHHHHHhcChhhhhcccCCeEEEEecc-CCCCcHHHHHHHHHHHHHhhhhcCCc
Q 003072 572 DAMFDIQVKRIHEYKRQLMNILGIVYRYKKMKEMSAVERKAKFVPRVCIFGGK-AFATYVQAKRIVKFITDVGATVNHDP 650 (850)
Q Consensus 572 d~lfd~~~kR~heYKRq~Lnil~ii~ry~~ik~~~~~~r~~~~~P~~~IFaGK-A~P~y~~aK~iIk~I~~va~~vn~Dp 650 (850)
+..+++.|=|+...|.... .|.-+.++.+ . .|..+ ..+++|..|- .-.+-..-.++-+.+.+++..||..-
T Consensus 264 ~~~~il~VgRl~~~Kgi~~-~l~A~~~ll~--~-~p~~~----~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~ 335 (726)
T PRK14501 264 GRKIILSIDRLDYTKGIPR-RLLAFERFLE--K-NPEWR----GKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEF 335 (726)
T ss_pred CCEEEEEecCcccccCHHH-HHHHHHHHHH--h-Ccccc----CCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhc
Confidence 4457889999999998877 7777776632 2 33221 1245555442 11111222344455555555454221
Q ss_pred CCCCcceEEEecC-CChhhhhhhccccccccccCCCccccCCCccchhhc-----ccceEeeeccccccccc
Q 003072 651 EIGDLLKVIFVPD-YNVSVAELLIPASELSQHISTAGMEASGTSNMKFAM-----NGCILIGTLDGANVEIR 716 (850)
Q Consensus 651 ~i~~~lkVvFlen-Y~vslAe~lipg~Dv~~nip~ag~EASGTs~MK~am-----NG~l~lstlDG~nvEi~ 716 (850)
..-+...|+|+.. ..-+---.+..+|||-.-+|.+ |.=|-.-+-||. .|++.+|+.-|+-.|+.
T Consensus 336 ~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~~--EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~ 405 (726)
T PRK14501 336 GTVDWTPIHYFYRSLPFEELVALYRAADVALVTPLR--DGMNLVAKEYVASRTDGDGVLILSEMAGAAAELA 405 (726)
T ss_pred CCCCcceEEEEeCCCCHHHHHHHHHhccEEEecccc--cccCcccceEEEEcCCCCceEEEecccchhHHhC
Confidence 1112234666654 3444445688999998877653 322222223333 38899999888877654
Done!